Query 012577
Match_columns 460
No_of_seqs 586 out of 2089
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 04:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.9E-66 4.1E-71 512.4 55.7 423 21-446 367-797 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.1E-65 4.5E-70 505.0 55.3 437 6-450 387-857 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 3.1E-62 6.8E-67 491.0 45.0 438 6-458 169-644 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.2E-61 2.6E-66 475.7 46.2 432 7-456 105-545 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6.3E-60 1.4E-64 474.3 47.0 436 6-457 68-607 (857)
6 PLN03081 pentatricopeptide (PP 100.0 5.2E-59 1.1E-63 457.1 43.4 413 8-435 142-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-26 1.1E-30 234.0 53.5 408 23-444 464-877 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-26 9E-31 234.6 51.5 398 21-430 496-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.5E-22 1.2E-26 183.5 35.1 246 163-420 108-362 (389)
10 PRK11788 tetratricopeptide rep 99.9 7.9E-22 1.7E-26 182.4 32.6 288 70-363 45-347 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.4E-25 167.9 33.2 410 23-444 47-496 (966)
12 PRK15174 Vi polysaccharide exp 99.9 3.4E-19 7.4E-24 172.8 44.3 333 24-365 42-383 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-18 2.3E-23 170.0 47.0 397 27-431 130-570 (615)
14 PRK11447 cellulose synthase su 99.9 1.6E-18 3.5E-23 179.6 50.5 392 32-437 277-746 (1157)
15 KOG4626 O-linked N-acetylgluco 99.9 2.9E-20 6.2E-25 165.3 31.2 380 21-415 113-500 (966)
16 PRK15174 Vi polysaccharide exp 99.9 1E-18 2.2E-23 169.5 43.0 332 60-400 42-382 (656)
17 PRK11447 cellulose synthase su 99.9 9.4E-18 2E-22 173.9 49.0 372 20-398 299-739 (1157)
18 PRK10049 pgaA outer membrane p 99.9 4.4E-17 9.6E-22 161.6 49.1 417 17-446 8-468 (765)
19 KOG4422 Uncharacterized conser 99.9 8.1E-17 1.8E-21 137.5 40.1 399 36-444 127-602 (625)
20 PRK10049 pgaA outer membrane p 99.8 5.4E-17 1.2E-21 161.0 41.4 395 8-415 31-470 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 3.6E-16 7.7E-21 152.4 46.5 370 20-400 156-572 (615)
22 KOG2003 TPR repeat-containing 99.8 3.6E-17 7.8E-22 140.7 28.8 392 20-420 197-709 (840)
23 PRK14574 hmsH outer membrane p 99.8 1.1E-14 2.3E-19 142.3 48.9 408 23-444 33-523 (822)
24 KOG4422 Uncharacterized conser 99.8 1.1E-14 2.4E-19 124.6 38.2 363 19-401 202-592 (625)
25 PRK09782 bacteriophage N4 rece 99.8 2E-13 4.2E-18 136.3 49.4 232 196-438 476-710 (987)
26 PRK14574 hmsH outer membrane p 99.8 1.4E-13 3E-18 134.6 45.8 366 26-399 70-513 (822)
27 KOG2002 TPR-containing nuclear 99.8 5.1E-14 1.1E-18 132.4 38.7 414 21-440 267-751 (1018)
28 KOG2002 TPR-containing nuclear 99.7 8.3E-14 1.8E-18 131.0 35.9 400 37-447 249-725 (1018)
29 PRK09782 bacteriophage N4 rece 99.7 8.1E-13 1.8E-17 131.9 43.2 350 38-399 356-740 (987)
30 PRK10747 putative protoheme IX 99.7 8.1E-13 1.8E-17 121.2 34.4 280 106-398 97-389 (398)
31 KOG2076 RNA polymerase III tra 99.7 4E-12 8.8E-17 119.0 37.7 362 31-397 146-553 (895)
32 PRK10747 putative protoheme IX 99.7 1.2E-12 2.7E-17 120.0 33.1 281 73-362 97-389 (398)
33 PF13429 TPR_15: Tetratricopep 99.6 2.7E-15 5.9E-20 131.5 13.6 191 165-360 81-274 (280)
34 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.5E-17 120.9 31.5 288 104-398 95-398 (409)
35 KOG0495 HAT repeat protein [RN 99.6 2.2E-10 4.7E-15 103.9 43.1 404 14-431 469-879 (913)
36 COG3071 HemY Uncharacterized e 99.6 1.1E-11 2.5E-16 105.8 32.7 289 106-404 97-395 (400)
37 KOG1155 Anaphase-promoting com 99.6 7.7E-11 1.7E-15 102.5 37.7 368 59-444 163-546 (559)
38 KOG1126 DNA-binding cell divis 99.6 2.5E-13 5.5E-18 123.0 23.5 279 75-361 334-618 (638)
39 KOG1126 DNA-binding cell divis 99.6 6.1E-13 1.3E-17 120.6 25.7 286 144-440 336-626 (638)
40 KOG1155 Anaphase-promoting com 99.6 8E-11 1.7E-15 102.4 37.4 315 91-420 162-481 (559)
41 PF13429 TPR_15: Tetratricopep 99.6 7.8E-15 1.7E-19 128.6 13.5 248 167-420 13-263 (280)
42 TIGR00540 hemY_coli hemY prote 99.6 7.5E-12 1.6E-16 115.6 33.8 283 73-360 97-396 (409)
43 KOG2076 RNA polymerase III tra 99.6 2.7E-11 5.8E-16 113.6 36.7 351 66-420 145-541 (895)
44 COG2956 Predicted N-acetylgluc 99.6 9.1E-12 2E-16 103.3 28.5 218 37-259 48-276 (389)
45 KOG0547 Translocase of outer m 99.6 5.5E-11 1.2E-15 104.1 34.2 388 27-426 118-560 (606)
46 COG2956 Predicted N-acetylgluc 99.6 1.9E-11 4E-16 101.5 29.5 220 106-327 48-277 (389)
47 KOG2003 TPR repeat-containing 99.6 1.3E-11 2.8E-16 107.0 29.2 207 172-385 500-709 (840)
48 KOG1915 Cell cycle control pro 99.6 4.9E-10 1.1E-14 97.9 37.7 366 36-414 153-549 (677)
49 KOG1173 Anaphase-promoting com 99.5 6.7E-10 1.5E-14 99.2 36.4 416 19-446 44-530 (611)
50 KOG1915 Cell cycle control pro 99.5 2.6E-09 5.7E-14 93.5 38.3 382 37-430 86-498 (677)
51 KOG0495 HAT repeat protein [RN 99.5 6.9E-09 1.5E-13 94.5 39.5 51 68-118 414-465 (913)
52 KOG2047 mRNA splicing factor [ 99.5 5.6E-09 1.2E-13 94.8 38.0 373 24-405 102-584 (835)
53 COG3071 HemY Uncharacterized e 99.5 2.1E-09 4.5E-14 92.2 32.8 284 142-436 98-394 (400)
54 PRK12370 invasion protein regu 99.4 2.7E-10 5.8E-15 109.4 30.0 248 176-432 275-535 (553)
55 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.5E-15 98.8 25.8 200 162-398 31-231 (234)
56 PF12569 NARP1: NMDA receptor- 99.4 2.1E-09 4.6E-14 99.9 34.2 293 26-327 6-333 (517)
57 KOG4318 Bicoid mRNA stability 99.4 1.4E-11 3E-16 115.1 18.5 273 115-420 12-286 (1088)
58 PRK12370 invasion protein regu 99.4 2.3E-10 4.9E-15 109.9 27.6 209 214-428 278-498 (553)
59 KOG4318 Bicoid mRNA stability 99.4 3.8E-11 8.3E-16 112.3 21.1 262 90-385 22-286 (1088)
60 PF13041 PPR_2: PPR repeat fam 99.4 5.7E-13 1.2E-17 82.2 6.4 49 160-208 1-49 (50)
61 TIGR02521 type_IV_pilW type IV 99.4 4.3E-10 9.3E-15 96.1 26.1 193 235-431 34-231 (234)
62 PF13041 PPR_2: PPR repeat fam 99.4 8.9E-13 1.9E-17 81.3 6.4 50 368-417 1-50 (50)
63 KOG1129 TPR repeat-containing 99.4 6.9E-11 1.5E-15 98.3 18.3 229 165-399 226-458 (478)
64 KOG1129 TPR repeat-containing 99.3 1.1E-10 2.5E-15 97.0 17.3 226 97-328 227-458 (478)
65 KOG1173 Anaphase-promoting com 99.3 1.5E-08 3.2E-13 90.9 31.1 265 144-416 261-533 (611)
66 PF12569 NARP1: NMDA receptor- 99.3 7.3E-09 1.6E-13 96.3 30.1 289 66-362 10-333 (517)
67 KOG1174 Anaphase-promoting com 99.3 3.3E-07 7.2E-12 79.3 37.0 413 22-444 37-511 (564)
68 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.3E-14 99.6 23.9 196 62-257 201-434 (508)
69 KOG0547 Translocase of outer m 99.3 1.1E-07 2.4E-12 83.9 33.2 235 171-416 335-578 (606)
70 KOG4340 Uncharacterized conser 99.3 2.7E-09 5.8E-14 87.9 21.5 322 18-359 4-335 (459)
71 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.2E-14 97.4 24.6 236 162-397 199-477 (508)
72 COG3063 PilF Tfp pilus assembl 99.3 9E-09 1.9E-13 81.9 23.2 197 164-364 37-237 (250)
73 KOG1156 N-terminal acetyltrans 99.3 3.1E-07 6.7E-12 84.0 35.9 93 304-400 376-469 (700)
74 KOG2376 Signal recognition par 99.3 1.1E-06 2.4E-11 79.6 39.9 336 71-420 90-507 (652)
75 KOG1174 Anaphase-promoting com 99.3 4.6E-07 9.9E-12 78.5 34.4 295 106-411 209-511 (564)
76 KOG2047 mRNA splicing factor [ 99.2 1.7E-06 3.7E-11 79.2 43.3 418 22-450 167-667 (835)
77 KOG3785 Uncharacterized conser 99.2 5E-07 1.1E-11 76.7 33.0 153 238-393 291-451 (557)
78 PRK11189 lipoprotein NlpI; Pro 99.2 7.4E-08 1.6E-12 84.8 28.7 227 176-411 40-276 (296)
79 KOG4162 Predicted calmodulin-b 99.2 1.1E-06 2.5E-11 82.0 35.0 203 56-259 319-540 (799)
80 PRK11189 lipoprotein NlpI; Pro 99.1 6.3E-08 1.4E-12 85.3 25.5 63 162-225 98-160 (296)
81 COG3063 PilF Tfp pilus assembl 99.1 1.2E-07 2.6E-12 75.6 23.7 195 200-398 38-235 (250)
82 KOG3785 Uncharacterized conser 99.1 3.3E-06 7.2E-11 71.8 32.4 387 31-438 29-460 (557)
83 cd05804 StaR_like StaR_like; a 99.1 1.9E-06 4E-11 78.9 34.0 193 61-258 7-212 (355)
84 KOG4162 Predicted calmodulin-b 99.1 1.3E-05 2.7E-10 75.3 37.6 394 11-420 310-769 (799)
85 PF04733 Coatomer_E: Coatomer 99.1 3E-08 6.5E-13 86.0 19.4 85 278-364 181-266 (290)
86 cd05804 StaR_like StaR_like; a 99.1 1.7E-06 3.8E-11 79.1 31.9 90 201-291 118-213 (355)
87 PF04733 Coatomer_E: Coatomer 99.1 4.5E-08 9.7E-13 84.9 19.9 257 169-444 8-275 (290)
88 KOG1070 rRNA processing protei 99.0 2.9E-07 6.2E-12 91.1 26.6 223 194-420 1455-1686(1710)
89 KOG1156 N-terminal acetyltrans 99.0 1E-05 2.2E-10 74.4 34.6 396 24-433 7-469 (700)
90 KOG0548 Molecular co-chaperone 99.0 2E-05 4.3E-10 71.0 33.5 373 33-417 11-471 (539)
91 PRK04841 transcriptional regul 98.9 2.7E-05 5.9E-10 80.7 38.4 332 68-400 382-761 (903)
92 KOG4340 Uncharacterized conser 98.9 1.6E-06 3.5E-11 71.9 21.1 311 96-420 13-360 (459)
93 PRK04841 transcriptional regul 98.8 5E-05 1.1E-09 78.8 36.5 327 102-428 383-756 (903)
94 PF12854 PPR_1: PPR repeat 98.8 4.7E-09 1E-13 57.9 3.7 32 157-188 2-33 (34)
95 PF12854 PPR_1: PPR repeat 98.8 6.6E-09 1.4E-13 57.3 4.1 34 191-224 1-34 (34)
96 KOG1125 TPR repeat-containing 98.8 1.1E-06 2.3E-11 79.6 19.9 243 171-420 294-557 (579)
97 KOG0985 Vesicle coat protein c 98.8 0.0001 2.2E-09 71.5 33.2 273 8-320 966-1241(1666)
98 KOG0624 dsRNA-activated protei 98.8 7.6E-05 1.7E-09 63.6 31.2 313 26-363 40-370 (504)
99 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.3E-09 65.6 35.9 407 19-431 15-500 (656)
100 PLN02789 farnesyltranstransfer 98.7 2.3E-05 4.9E-10 69.2 26.0 221 95-346 39-267 (320)
101 PRK14720 transcript cleavage f 98.7 8.4E-06 1.8E-10 80.2 25.3 253 161-437 30-289 (906)
102 PRK10370 formate-dependent nit 98.7 3.7E-06 8.1E-11 68.9 19.7 156 240-409 24-182 (198)
103 KOG0624 dsRNA-activated protei 98.7 7.8E-05 1.7E-09 63.5 27.3 297 99-410 44-380 (504)
104 PLN02789 farnesyltranstransfer 98.7 5.2E-05 1.1E-09 66.9 27.7 212 165-382 40-267 (320)
105 KOG3616 Selective LIM binding 98.7 3.7E-05 8E-10 71.9 27.4 217 169-422 739-956 (1636)
106 KOG1128 Uncharacterized conser 98.7 8.8E-06 1.9E-10 75.9 23.0 208 99-326 404-614 (777)
107 KOG1070 rRNA processing protei 98.7 3.6E-06 7.7E-11 83.7 21.5 204 231-438 1457-1669(1710)
108 KOG3081 Vesicle coat complex C 98.7 9.1E-05 2E-09 60.9 25.3 175 148-361 94-269 (299)
109 KOG1125 TPR repeat-containing 98.7 4.4E-06 9.6E-11 75.7 19.7 125 230-356 428-564 (579)
110 TIGR03302 OM_YfiO outer membra 98.7 1.1E-05 2.5E-10 68.8 21.7 195 161-399 32-232 (235)
111 KOG3081 Vesicle coat complex C 98.7 6.2E-05 1.4E-09 61.8 24.0 256 169-444 15-281 (299)
112 KOG1128 Uncharacterized conser 98.7 3.6E-06 7.9E-11 78.3 19.2 235 164-417 400-635 (777)
113 TIGR03302 OM_YfiO outer membra 98.7 7.8E-06 1.7E-10 69.8 20.4 145 267-431 73-231 (235)
114 KOG2376 Signal recognition par 98.7 0.00032 7E-09 64.2 31.6 284 101-396 183-517 (652)
115 PRK14720 transcript cleavage f 98.6 7.1E-05 1.5E-09 73.9 27.8 133 198-345 117-268 (906)
116 PRK15359 type III secretion sy 98.6 6.3E-06 1.4E-10 63.9 16.2 122 285-414 14-135 (144)
117 COG5010 TadD Flp pilus assembl 98.5 4.2E-05 9.1E-10 62.8 19.9 155 201-358 70-226 (257)
118 COG5010 TadD Flp pilus assembl 98.5 3.9E-05 8.4E-10 63.0 19.5 157 236-396 70-228 (257)
119 KOG0985 Vesicle coat protein c 98.5 0.0013 2.8E-08 64.3 34.7 161 232-420 1104-1264(1666)
120 KOG3616 Selective LIM binding 98.5 0.00014 2.9E-09 68.3 24.7 188 139-357 743-931 (1636)
121 KOG3617 WD40 and TPR repeat-co 98.5 0.001 2.2E-08 63.6 30.2 226 34-291 738-994 (1416)
122 KOG1127 TPR repeat-containing 98.5 0.0004 8.8E-09 67.5 27.9 367 40-419 474-898 (1238)
123 PRK10370 formate-dependent nit 98.5 5.2E-05 1.1E-09 62.2 19.4 95 266-362 75-172 (198)
124 PRK15179 Vi polysaccharide bio 98.5 0.00015 3.3E-09 70.7 25.5 143 194-339 83-227 (694)
125 PRK15359 type III secretion sy 98.5 7.4E-06 1.6E-10 63.5 13.7 103 19-123 19-122 (144)
126 KOG3617 WD40 and TPR repeat-co 98.5 0.00014 3.1E-09 69.0 23.3 234 70-360 738-993 (1416)
127 COG4783 Putative Zn-dependent 98.4 0.00031 6.7E-09 63.0 24.0 105 144-252 323-428 (484)
128 KOG1914 mRNA cleavage and poly 98.4 0.0013 2.8E-08 59.8 36.0 381 57-444 17-478 (656)
129 COG4783 Putative Zn-dependent 98.4 0.0007 1.5E-08 60.8 25.9 138 241-399 315-454 (484)
130 PRK15179 Vi polysaccharide bio 98.4 0.00031 6.7E-09 68.7 25.3 182 228-419 82-269 (694)
131 KOG3060 Uncharacterized conser 98.4 0.00067 1.4E-08 55.6 22.6 159 238-400 58-221 (289)
132 TIGR02552 LcrH_SycD type III s 98.3 3.9E-05 8.5E-10 59.0 14.5 97 300-399 18-114 (135)
133 KOG0548 Molecular co-chaperone 98.3 0.0015 3.4E-08 59.3 25.9 102 68-172 10-114 (539)
134 TIGR00756 PPR pentatricopeptid 98.3 1.1E-06 2.5E-11 49.2 4.1 35 94-128 1-35 (35)
135 KOG3060 Uncharacterized conser 98.3 0.0011 2.4E-08 54.3 21.6 164 62-228 54-222 (289)
136 PF13812 PPR_3: Pentatricopept 98.3 1.9E-06 4E-11 48.0 4.2 33 94-126 2-34 (34)
137 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.6E-11 47.7 4.4 33 372-404 2-34 (35)
138 TIGR02552 LcrH_SycD type III s 98.2 0.00011 2.4E-09 56.5 15.0 98 265-364 18-115 (135)
139 PF13812 PPR_3: Pentatricopept 98.2 3E-06 6.4E-11 47.1 4.2 33 371-403 2-34 (34)
140 PF09976 TPR_21: Tetratricopep 98.2 0.0002 4.4E-09 55.6 15.8 122 165-288 15-142 (145)
141 KOG1127 TPR repeat-containing 98.2 0.0031 6.8E-08 61.7 26.1 178 76-259 474-657 (1238)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.9E-05 2.1E-09 66.6 15.0 123 96-224 172-295 (395)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0002 4.3E-09 64.6 15.9 123 268-397 173-295 (395)
144 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00026 5.5E-09 53.0 14.1 107 301-408 4-113 (119)
145 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.9E-09 63.6 13.8 146 266-415 3-150 (280)
146 KOG2053 Mitochondrial inherita 98.1 0.0075 1.6E-07 58.5 25.7 222 174-400 21-256 (932)
147 PF09976 TPR_21: Tetratricopep 98.0 0.00038 8.2E-09 54.1 14.5 111 144-257 28-143 (145)
148 PF10037 MRP-S27: Mitochondria 98.0 9.9E-05 2.1E-09 66.9 12.5 118 230-347 64-186 (429)
149 PF10037 MRP-S27: Mitochondria 98.0 0.00014 3.1E-09 65.9 13.1 118 92-209 65-185 (429)
150 PF08579 RPM2: Mitochondrial r 98.0 0.00016 3.5E-09 51.2 10.3 77 97-173 29-115 (120)
151 PF01535 PPR: PPR repeat; Int 98.0 1.2E-05 2.7E-10 43.4 3.5 31 94-124 1-31 (31)
152 PF08579 RPM2: Mitochondrial r 97.9 0.00021 4.5E-09 50.6 10.0 79 166-244 29-116 (120)
153 PF01535 PPR: PPR repeat; Int 97.9 1.2E-05 2.7E-10 43.4 3.1 29 164-192 2-30 (31)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00028 6.1E-09 52.7 11.3 99 25-123 3-106 (119)
155 PF06239 ECSIT: Evolutionarily 97.9 0.0002 4.4E-09 57.4 9.9 115 80-212 34-153 (228)
156 PF14938 SNAP: Soluble NSF att 97.8 0.0086 1.9E-07 52.5 21.1 62 337-398 158-224 (282)
157 PF12895 Apc3: Anaphase-promot 97.8 6E-05 1.3E-09 52.3 6.0 82 37-118 2-83 (84)
158 PF14938 SNAP: Soluble NSF att 97.8 0.012 2.5E-07 51.7 21.2 206 164-397 37-264 (282)
159 cd00189 TPR Tetratricopeptide 97.8 0.00043 9.4E-09 49.0 10.4 91 305-398 6-96 (100)
160 cd00189 TPR Tetratricopeptide 97.7 0.00059 1.3E-08 48.3 10.5 94 267-362 3-96 (100)
161 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.2E-09 51.2 5.9 81 312-395 2-83 (84)
162 PRK15363 pathogenicity island 97.7 0.0029 6.4E-08 48.5 14.1 95 269-365 40-134 (157)
163 PRK02603 photosystem I assembl 97.7 0.0046 1E-07 49.7 15.9 88 266-354 37-126 (172)
164 KOG2053 Mitochondrial inherita 97.7 0.062 1.3E-06 52.5 41.9 191 35-228 54-257 (932)
165 PLN03088 SGT1, suppressor of 97.7 0.0013 2.9E-08 59.5 14.1 91 272-364 10-100 (356)
166 PF14559 TPR_19: Tetratricopep 97.7 0.00022 4.7E-09 47.1 6.7 64 35-100 2-65 (68)
167 PRK15363 pathogenicity island 97.7 0.0035 7.6E-08 48.1 13.7 92 165-258 38-129 (157)
168 PRK10866 outer membrane biogen 97.7 0.028 6.1E-07 47.8 22.9 59 168-228 38-100 (243)
169 PRK10866 outer membrane biogen 97.7 0.01 2.2E-07 50.5 18.2 190 63-258 35-238 (243)
170 PLN03088 SGT1, suppressor of 97.6 0.0031 6.8E-08 57.2 15.6 105 306-415 9-113 (356)
171 PF05843 Suf: Suppressor of fo 97.6 0.0036 7.7E-08 54.7 14.8 128 199-328 3-136 (280)
172 PF06239 ECSIT: Evolutionarily 97.5 0.00082 1.8E-08 54.0 9.2 107 297-423 45-156 (228)
173 CHL00033 ycf3 photosystem I as 97.5 0.0026 5.7E-08 50.9 12.4 61 165-225 38-100 (168)
174 PRK02603 photosystem I assembl 97.5 0.0062 1.3E-07 48.9 14.1 90 162-252 35-126 (172)
175 PF04840 Vps16_C: Vps16, C-ter 97.5 0.067 1.5E-06 47.4 27.2 111 266-397 179-289 (319)
176 KOG0550 Molecular chaperone (D 97.5 0.069 1.5E-06 47.5 21.4 213 230-447 166-400 (486)
177 PRK10153 DNA-binding transcrip 97.5 0.014 2.9E-07 55.6 17.8 141 262-408 335-489 (517)
178 PF12688 TPR_5: Tetratrico pep 97.4 0.014 3E-07 43.2 14.0 93 305-397 7-102 (120)
179 KOG0553 TPR repeat-containing 97.4 0.0023 4.9E-08 54.0 10.8 99 272-375 89-187 (304)
180 CHL00033 ycf3 photosystem I as 97.4 0.006 1.3E-07 48.8 13.0 62 267-328 38-101 (168)
181 PRK10153 DNA-binding transcrip 97.4 0.017 3.6E-07 55.0 17.7 141 227-369 332-488 (517)
182 COG4235 Cytochrome c biogenesi 97.4 0.013 2.9E-07 49.8 14.7 126 284-415 142-270 (287)
183 PF12688 TPR_5: Tetratrico pep 97.3 0.02 4.4E-07 42.3 13.8 106 270-381 7-117 (120)
184 PF04840 Vps16_C: Vps16, C-ter 97.3 0.1 2.2E-06 46.3 25.2 110 233-359 178-287 (319)
185 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.12 2.6E-06 46.6 35.9 417 19-444 37-541 (660)
186 PF13414 TPR_11: TPR repeat; P 97.3 0.0017 3.8E-08 42.8 7.4 59 301-360 5-64 (69)
187 PF13414 TPR_11: TPR repeat; P 97.3 0.001 2.2E-08 44.0 6.2 64 161-225 2-66 (69)
188 KOG2796 Uncharacterized conser 97.3 0.047 1E-06 45.4 16.5 129 97-226 181-315 (366)
189 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.7E-08 42.9 6.5 58 168-226 3-60 (65)
190 PF13432 TPR_16: Tetratricopep 97.3 0.0014 3.1E-08 42.7 6.6 26 372-397 33-58 (65)
191 PF12921 ATP13: Mitochondrial 97.2 0.0063 1.4E-07 45.4 10.2 80 300-379 3-97 (126)
192 PF14559 TPR_19: Tetratricopep 97.2 0.0017 3.8E-08 42.7 6.6 50 347-398 4-53 (68)
193 KOG2796 Uncharacterized conser 97.2 0.019 4.1E-07 47.6 13.3 140 199-341 179-326 (366)
194 KOG0553 TPR repeat-containing 97.2 0.0056 1.2E-07 51.8 10.6 93 172-266 91-184 (304)
195 KOG1130 Predicted G-alpha GTPa 97.1 0.0097 2.1E-07 52.5 11.5 131 267-397 198-342 (639)
196 PF13525 YfiO: Outer membrane 97.1 0.13 2.7E-06 42.6 19.5 59 168-226 11-71 (203)
197 PF12921 ATP13: Mitochondrial 97.1 0.0097 2.1E-07 44.4 10.0 88 333-420 1-103 (126)
198 KOG1130 Predicted G-alpha GTPa 97.1 0.019 4.2E-07 50.7 12.8 86 31-116 24-118 (639)
199 COG4700 Uncharacterized protei 97.0 0.11 2.4E-06 40.9 18.0 65 160-224 87-151 (251)
200 KOG1538 Uncharacterized conser 97.0 0.046 1E-06 51.3 15.5 56 129-187 599-657 (1081)
201 PRK10803 tol-pal system protei 97.0 0.025 5.4E-07 48.6 13.2 88 310-399 154-246 (263)
202 COG4235 Cytochrome c biogenesi 97.0 0.037 7.9E-07 47.2 13.7 98 92-191 155-256 (287)
203 KOG2041 WD40 repeat protein [G 97.0 0.37 7.9E-06 46.1 26.6 221 57-292 689-951 (1189)
204 PF13371 TPR_9: Tetratricopept 96.9 0.0047 1E-07 41.3 6.7 52 309-361 5-56 (73)
205 PRK10803 tol-pal system protei 96.9 0.032 7E-07 47.9 13.0 99 266-364 145-247 (263)
206 PF03704 BTAD: Bacterial trans 96.8 0.011 2.4E-07 46.0 9.1 59 336-396 64-122 (146)
207 PF13525 YfiO: Outer membrane 96.8 0.22 4.7E-06 41.2 18.4 56 203-258 11-68 (203)
208 PF03704 BTAD: Bacterial trans 96.8 0.0082 1.8E-07 46.7 8.2 116 103-235 16-139 (146)
209 PF13371 TPR_9: Tetratricopept 96.8 0.0065 1.4E-07 40.6 6.5 58 170-228 3-60 (73)
210 COG4700 Uncharacterized protei 96.7 0.22 4.8E-06 39.3 18.4 128 261-391 86-214 (251)
211 PF13281 DUF4071: Domain of un 96.7 0.46 1E-05 42.7 20.2 162 237-400 146-335 (374)
212 COG3898 Uncharacterized membra 96.6 0.45 9.9E-06 42.2 25.5 277 72-362 96-391 (531)
213 KOG2280 Vacuolar assembly/sort 96.6 0.78 1.7E-05 44.4 25.3 338 19-397 427-797 (829)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.54 1.2E-05 42.6 20.2 145 197-345 397-546 (660)
215 PF13424 TPR_12: Tetratricopep 96.5 0.014 3.1E-07 39.5 6.9 64 335-398 6-74 (78)
216 PRK15331 chaperone protein Sic 96.5 0.051 1.1E-06 42.1 10.3 93 169-263 44-136 (165)
217 KOG3941 Intermediate in Toll s 96.5 0.027 5.9E-07 47.3 9.3 117 79-213 53-174 (406)
218 KOG1538 Uncharacterized conser 96.5 0.81 1.7E-05 43.5 19.7 53 234-292 749-801 (1081)
219 PF10300 DUF3808: Protein of u 96.5 0.59 1.3E-05 44.3 19.4 160 62-224 190-374 (468)
220 PF10300 DUF3808: Protein of u 96.5 0.16 3.4E-06 48.1 15.4 162 234-398 190-375 (468)
221 KOG1258 mRNA processing protei 96.5 0.82 1.8E-05 43.1 33.0 183 231-420 296-490 (577)
222 smart00299 CLH Clathrin heavy 96.4 0.29 6.2E-06 37.7 14.9 126 96-243 10-136 (140)
223 PF13424 TPR_12: Tetratricopep 96.4 0.0082 1.8E-07 40.7 5.1 62 163-224 6-73 (78)
224 PF13281 DUF4071: Domain of un 96.4 0.73 1.6E-05 41.5 21.3 82 58-139 139-228 (374)
225 COG1729 Uncharacterized protei 96.3 0.086 1.9E-06 44.4 11.1 98 301-399 144-244 (262)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.068 1.5E-06 48.7 11.1 98 297-401 73-176 (453)
227 COG3118 Thioredoxin domain-con 96.3 0.65 1.4E-05 39.8 17.5 143 169-313 141-286 (304)
228 PRK15331 chaperone protein Sic 96.1 0.088 1.9E-06 40.8 9.6 93 27-121 40-133 (165)
229 COG4105 ComL DNA uptake lipopr 96.1 0.68 1.5E-05 38.9 18.0 68 24-91 34-102 (254)
230 smart00299 CLH Clathrin heavy 96.0 0.49 1.1E-05 36.4 15.2 126 268-417 11-137 (140)
231 KOG0550 Molecular chaperone (D 95.9 1.2 2.6E-05 40.0 24.6 57 30-88 55-111 (486)
232 PF04053 Coatomer_WDAD: Coatom 95.9 0.19 4.2E-06 46.8 12.5 45 71-119 329-373 (443)
233 PF04053 Coatomer_WDAD: Coatom 95.7 0.46 9.9E-06 44.4 14.4 75 242-328 328-402 (443)
234 PRK11906 transcriptional regul 95.7 1 2.2E-05 41.4 15.9 115 279-396 319-433 (458)
235 PF07079 DUF1347: Protein of u 95.6 1.8 3.9E-05 39.5 38.5 124 280-412 396-532 (549)
236 PF13512 TPR_18: Tetratricopep 95.6 0.24 5.2E-06 37.5 9.8 71 21-91 7-78 (142)
237 KOG2114 Vacuolar assembly/sort 95.6 2.7 5.9E-05 41.5 21.9 100 340-444 711-817 (933)
238 KOG3941 Intermediate in Toll s 95.5 0.17 3.6E-06 42.8 9.6 109 298-426 66-179 (406)
239 PF08631 SPO22: Meiosis protei 95.4 1.6 3.6E-05 38.1 25.1 222 173-397 4-273 (278)
240 KOG1941 Acetylcholine receptor 95.4 0.77 1.7E-05 40.5 13.4 196 163-361 44-273 (518)
241 PF04184 ST7: ST7 protein; In 95.4 0.91 2E-05 41.9 14.5 57 304-360 264-321 (539)
242 COG3898 Uncharacterized membra 95.4 1.9 4.1E-05 38.6 30.4 291 95-399 84-392 (531)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.12 2.7E-06 47.1 9.1 66 159-226 72-141 (453)
244 PF13428 TPR_14: Tetratricopep 95.4 0.075 1.6E-06 31.1 5.4 39 372-411 3-41 (44)
245 COG1729 Uncharacterized protei 95.2 0.37 7.9E-06 40.8 10.7 96 27-122 144-244 (262)
246 KOG4555 TPR repeat-containing 95.1 0.95 2.1E-05 33.5 11.3 92 308-400 52-145 (175)
247 PF09205 DUF1955: Domain of un 95.1 0.99 2.2E-05 33.5 13.7 61 167-228 91-151 (161)
248 KOG0543 FKBP-type peptidyl-pro 95.0 0.64 1.4E-05 41.6 12.1 95 300-398 258-354 (397)
249 PF13512 TPR_18: Tetratricopep 95.0 0.8 1.7E-05 34.8 11.0 83 60-142 10-96 (142)
250 PF13170 DUF4003: Protein of u 94.9 2.1 4.5E-05 37.7 15.0 129 109-239 78-224 (297)
251 COG4649 Uncharacterized protei 94.8 1.5 3.3E-05 34.3 13.7 135 59-196 58-201 (221)
252 KOG0543 FKBP-type peptidyl-pro 94.7 0.8 1.7E-05 41.0 12.0 98 264-363 257-355 (397)
253 KOG2610 Uncharacterized conser 94.7 1.1 2.5E-05 39.0 12.4 153 173-326 114-274 (491)
254 KOG4555 TPR repeat-containing 94.7 1.3 2.8E-05 32.9 10.9 87 171-258 52-141 (175)
255 COG3629 DnrI DNA-binding trans 94.7 0.53 1.1E-05 40.5 10.5 78 163-241 154-236 (280)
256 PF04184 ST7: ST7 protein; In 94.6 4 8.6E-05 38.0 17.1 148 168-327 174-323 (539)
257 KOG2041 WD40 repeat protein [G 94.5 5.1 0.00011 38.9 24.9 25 62-86 798-822 (1189)
258 COG3629 DnrI DNA-binding trans 94.4 0.61 1.3E-05 40.1 10.4 80 334-415 153-237 (280)
259 COG3118 Thioredoxin domain-con 94.4 3 6.6E-05 35.9 17.8 78 10-89 120-197 (304)
260 PF13428 TPR_14: Tetratricopep 94.2 0.19 4.2E-06 29.3 5.0 27 165-191 4-30 (44)
261 PF09205 DUF1955: Domain of un 94.0 1.9 4E-05 32.2 14.1 139 34-193 12-151 (161)
262 KOG1550 Extracellular protein 93.9 6.9 0.00015 38.2 23.4 118 105-227 261-394 (552)
263 COG4105 ComL DNA uptake lipopr 93.8 3.6 7.8E-05 34.7 23.1 81 162-243 35-117 (254)
264 PF13170 DUF4003: Protein of u 93.7 4.5 9.8E-05 35.6 20.5 25 180-204 200-224 (297)
265 PF07079 DUF1347: Protein of u 93.7 5.7 0.00012 36.5 31.4 333 30-375 134-530 (549)
266 PRK09687 putative lyase; Provi 93.4 5 0.00011 35.1 28.5 139 261-416 139-278 (280)
267 PF02259 FAT: FAT domain; Int 93.4 6.1 0.00013 35.9 20.3 65 298-362 145-212 (352)
268 PF10602 RPN7: 26S proteasome 93.3 1.2 2.7E-05 35.7 9.8 63 163-225 37-101 (177)
269 PF07035 Mic1: Colon cancer-as 93.3 3.3 7.2E-05 32.7 15.6 33 183-215 15-47 (167)
270 KOG2280 Vacuolar assembly/sort 93.1 9.5 0.0002 37.5 29.1 104 297-420 682-785 (829)
271 PF11207 DUF2989: Protein of u 92.9 1.8 3.9E-05 35.0 10.0 79 137-216 116-197 (203)
272 PF13176 TPR_7: Tetratricopept 92.9 0.27 6E-06 27.2 4.0 24 200-223 2-25 (36)
273 PF07035 Mic1: Colon cancer-as 92.8 4 8.7E-05 32.2 14.8 134 283-431 13-148 (167)
274 COG0457 NrfG FOG: TPR repeat [ 92.7 5.1 0.00011 33.4 28.5 200 197-399 59-265 (291)
275 PF08631 SPO22: Meiosis protei 92.7 6.4 0.00014 34.5 24.0 18 309-326 256-273 (278)
276 PF13176 TPR_7: Tetratricopept 92.7 0.32 7E-06 26.9 4.1 26 372-397 1-26 (36)
277 KOG1585 Protein required for f 92.6 5.4 0.00012 33.4 16.6 24 97-120 35-58 (308)
278 PF09613 HrpB1_HrpK: Bacterial 92.5 4.1 8.8E-05 31.8 12.1 51 72-122 22-73 (160)
279 KOG2114 Vacuolar assembly/sort 92.2 13 0.00029 37.0 17.5 183 58-258 332-516 (933)
280 KOG1920 IkappaB kinase complex 92.1 17 0.00037 37.9 19.8 78 205-291 947-1026(1265)
281 COG4785 NlpI Lipoprotein NlpI, 91.9 6.2 0.00013 32.4 15.9 85 71-155 76-161 (297)
282 KOG1920 IkappaB kinase complex 91.6 19 0.00042 37.5 24.7 25 165-189 793-819 (1265)
283 KOG4570 Uncharacterized conser 91.4 1.3 2.8E-05 38.2 7.9 99 93-192 64-165 (418)
284 KOG1585 Protein required for f 91.3 7.8 0.00017 32.5 16.0 87 270-357 156-250 (308)
285 PF13431 TPR_17: Tetratricopep 91.2 0.31 6.8E-06 26.6 2.8 23 195-217 11-33 (34)
286 PRK09687 putative lyase; Provi 91.2 9.8 0.00021 33.3 28.3 232 59-310 36-278 (280)
287 KOG1586 Protein required for f 91.1 8 0.00017 32.2 13.0 30 379-408 163-192 (288)
288 PF10602 RPN7: 26S proteasome 91.0 4.6 9.9E-05 32.5 10.5 95 301-397 38-140 (177)
289 COG4649 Uncharacterized protei 90.8 6.8 0.00015 30.9 14.6 135 196-363 58-196 (221)
290 KOG1464 COP9 signalosome, subu 90.7 9.7 0.00021 32.4 19.7 281 156-444 20-343 (440)
291 PF11207 DUF2989: Protein of u 90.7 2.5 5.4E-05 34.3 8.5 79 103-182 117-198 (203)
292 KOG4570 Uncharacterized conser 90.3 7.7 0.00017 33.8 11.4 101 227-328 59-164 (418)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 2.9 6.2E-05 29.2 7.1 44 318-361 26-69 (103)
294 PF13431 TPR_17: Tetratricopep 89.9 0.45 9.8E-06 25.9 2.7 20 299-318 13-32 (34)
295 PF02284 COX5A: Cytochrome c o 89.9 3.2 7E-05 29.3 7.3 41 287-327 33-73 (108)
296 COG3947 Response regulator con 89.8 12 0.00027 32.3 14.3 59 199-258 281-339 (361)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 89.8 4.1 8.8E-05 28.5 7.7 63 279-342 22-84 (103)
298 PRK11906 transcriptional regul 89.8 17 0.00037 33.8 17.5 79 145-225 322-400 (458)
299 COG1747 Uncharacterized N-term 89.8 18 0.00039 34.0 24.6 178 233-417 67-251 (711)
300 PF02259 FAT: FAT domain; Int 89.7 16 0.00034 33.3 23.4 61 197-257 146-209 (352)
301 PF13929 mRNA_stabil: mRNA sta 89.6 13 0.00028 32.2 15.1 124 96-222 134-263 (292)
302 COG0457 NrfG FOG: TPR repeat [ 89.3 11 0.00025 31.2 28.8 201 162-364 59-266 (291)
303 KOG2066 Vacuolar assembly/sort 89.2 25 0.00054 34.9 27.1 77 31-109 363-439 (846)
304 KOG0276 Vesicle coat complex C 89.1 10 0.00023 36.2 12.2 44 72-119 649-692 (794)
305 TIGR02508 type_III_yscG type I 89.0 6.2 0.00013 27.8 9.8 89 37-132 18-106 (115)
306 TIGR02561 HrpB1_HrpK type III 89.0 8.7 0.00019 29.5 11.5 19 104-122 55-73 (153)
307 PF02284 COX5A: Cytochrome c o 88.7 6.3 0.00014 27.9 8.1 47 145-191 28-74 (108)
308 PF08424 NRDE-2: NRDE-2, neces 88.5 18 0.0004 32.4 17.3 120 280-401 47-185 (321)
309 PF00637 Clathrin: Region in C 88.4 0.37 8E-06 37.2 2.4 84 168-258 13-96 (143)
310 COG2976 Uncharacterized protei 88.3 12 0.00026 30.2 11.0 127 25-157 55-189 (207)
311 PF00515 TPR_1: Tetratricopept 88.0 1.7 3.8E-05 23.3 4.4 26 373-398 4-29 (34)
312 PF13374 TPR_10: Tetratricopep 87.8 1.6 3.4E-05 24.8 4.3 27 198-224 3-29 (42)
313 PF00515 TPR_1: Tetratricopept 87.8 1.6 3.5E-05 23.4 4.1 27 199-225 3-29 (34)
314 PF13374 TPR_10: Tetratricopep 87.6 1.7 3.7E-05 24.6 4.4 28 371-398 3-30 (42)
315 KOG2610 Uncharacterized conser 87.4 20 0.00043 31.7 22.4 144 144-289 120-272 (491)
316 PF07719 TPR_2: Tetratricopept 87.1 2.1 4.5E-05 22.9 4.4 25 374-398 5-29 (34)
317 PF09477 Type_III_YscG: Bacter 86.3 10 0.00022 27.2 11.0 83 35-123 17-99 (116)
318 PF07719 TPR_2: Tetratricopept 86.3 2.8 6E-05 22.3 4.6 30 335-364 2-31 (34)
319 PF00637 Clathrin: Region in C 85.8 0.39 8.4E-06 37.1 1.2 54 270-323 13-66 (143)
320 PF09613 HrpB1_HrpK: Bacterial 85.7 15 0.00033 28.7 13.4 52 173-226 21-73 (160)
321 PF13174 TPR_6: Tetratricopept 85.2 0.75 1.6E-05 24.4 1.9 10 74-83 14-23 (33)
322 KOG0890 Protein kinase of the 85.1 77 0.0017 36.3 26.4 147 67-221 1390-1542(2382)
323 KOG1464 COP9 signalosome, subu 84.9 24 0.00051 30.2 18.5 271 122-409 20-341 (440)
324 COG3947 Response regulator con 84.6 26 0.00056 30.4 16.9 72 372-444 281-359 (361)
325 PRK11619 lytic murein transgly 84.6 46 0.001 33.3 30.2 334 5-370 163-511 (644)
326 COG4455 ImpE Protein of avirul 84.2 7.2 0.00016 32.1 7.5 57 28-86 5-61 (273)
327 PF13929 mRNA_stabil: mRNA sta 83.8 28 0.00061 30.2 16.8 97 298-394 163-262 (292)
328 TIGR02561 HrpB1_HrpK type III 83.7 18 0.00039 27.8 11.9 51 311-363 22-73 (153)
329 PF10345 Cohesin_load: Cohesin 83.5 51 0.0011 32.9 30.0 165 94-258 60-251 (608)
330 PF04097 Nic96: Nup93/Nic96; 83.1 52 0.0011 32.8 17.1 229 204-438 265-537 (613)
331 COG4455 ImpE Protein of avirul 82.8 11 0.00025 31.0 8.0 76 165-241 4-81 (273)
332 PF06552 TOM20_plant: Plant sp 82.4 20 0.00043 28.7 9.1 30 41-72 8-37 (186)
333 PF13181 TPR_8: Tetratricopept 82.1 4.8 0.0001 21.4 4.3 28 372-399 3-30 (34)
334 PF13181 TPR_8: Tetratricopept 81.6 5 0.00011 21.4 4.3 27 199-225 3-29 (34)
335 cd08819 CARD_MDA5_2 Caspase ac 81.3 10 0.00023 25.9 6.3 62 9-77 22-83 (88)
336 KOG2063 Vacuolar assembly/sort 81.3 70 0.0015 33.0 19.1 28 95-122 506-533 (877)
337 PF13174 TPR_6: Tetratricopept 81.2 2.5 5.4E-05 22.3 2.9 19 344-362 10-28 (33)
338 TIGR03504 FimV_Cterm FimV C-te 80.9 5.2 0.00011 23.4 4.2 22 377-398 6-27 (44)
339 PF07721 TPR_4: Tetratricopept 80.7 3.3 7.1E-05 20.7 3.0 18 66-83 7-24 (26)
340 KOG4234 TPR repeat-containing 80.6 25 0.00055 28.6 9.1 88 171-259 104-195 (271)
341 TIGR02508 type_III_yscG type I 80.5 18 0.00038 25.6 7.7 78 144-228 22-99 (115)
342 TIGR03504 FimV_Cterm FimV C-te 79.4 5.1 0.00011 23.4 3.8 21 204-224 6-26 (44)
343 PF11846 DUF3366: Domain of un 79.3 12 0.00026 30.6 7.7 34 366-399 140-173 (193)
344 COG2976 Uncharacterized protei 79.0 33 0.00072 27.9 14.2 54 273-328 135-188 (207)
345 PRK15180 Vi polysaccharide bio 78.7 59 0.0013 30.5 27.1 128 26-157 291-421 (831)
346 COG4785 NlpI Lipoprotein NlpI, 77.7 39 0.00085 28.0 16.0 160 162-328 99-266 (297)
347 KOG0276 Vesicle coat complex C 77.7 34 0.00075 33.0 10.5 149 174-359 598-746 (794)
348 KOG2063 Vacuolar assembly/sort 77.4 94 0.002 32.2 15.5 27 62-88 506-532 (877)
349 PF04097 Nic96: Nup93/Nic96; 76.7 77 0.0017 31.6 13.5 65 167-232 116-187 (613)
350 KOG4234 TPR repeat-containing 76.4 41 0.00088 27.5 11.3 92 272-364 103-198 (271)
351 PF13762 MNE1: Mitochondrial s 76.1 33 0.00072 26.4 9.3 81 95-175 41-128 (145)
352 PF11848 DUF3368: Domain of un 76.0 13 0.00028 22.1 5.1 34 380-413 12-45 (48)
353 PF07163 Pex26: Pex26 protein; 74.9 42 0.0009 29.0 9.4 87 271-357 90-181 (309)
354 COG1747 Uncharacterized N-term 74.8 79 0.0017 30.1 24.2 93 160-257 64-156 (711)
355 PF11663 Toxin_YhaV: Toxin wit 74.6 3.8 8.1E-05 30.6 3.0 33 381-415 106-138 (140)
356 KOG2396 HAT (Half-A-TPR) repea 74.6 79 0.0017 30.0 23.1 239 148-399 303-559 (568)
357 PRK10941 hypothetical protein; 74.4 58 0.0013 28.3 11.1 78 302-380 184-261 (269)
358 KOG1550 Extracellular protein 73.4 97 0.0021 30.5 25.8 272 108-400 227-539 (552)
359 KOG4648 Uncharacterized conser 73.3 26 0.00057 31.1 8.1 94 27-122 100-194 (536)
360 PF10579 Rapsyn_N: Rapsyn N-te 73.2 12 0.00026 25.1 4.7 47 346-392 18-65 (80)
361 KOG4648 Uncharacterized conser 72.0 14 0.00031 32.6 6.2 53 239-291 104-158 (536)
362 PF07163 Pex26: Pex26 protein; 71.5 65 0.0014 27.9 9.7 15 204-218 90-104 (309)
363 KOG2471 TPR repeat-containing 71.3 94 0.002 29.4 14.6 109 308-418 249-382 (696)
364 KOG0991 Replication factor C, 71.2 62 0.0013 27.3 15.1 141 269-419 135-286 (333)
365 KOG4077 Cytochrome c oxidase, 71.1 20 0.00044 26.6 5.8 46 318-363 68-113 (149)
366 PHA02875 ankyrin repeat protei 70.8 93 0.002 29.1 15.0 13 72-84 11-23 (413)
367 PF09477 Type_III_YscG: Bacter 70.8 36 0.00079 24.5 8.8 77 144-227 23-99 (116)
368 PRK13800 putative oxidoreducta 70.8 1.5E+02 0.0032 31.4 28.6 255 81-363 625-881 (897)
369 KOG2066 Vacuolar assembly/sort 70.5 1.2E+02 0.0027 30.5 24.9 103 66-174 362-467 (846)
370 PF07575 Nucleopor_Nup85: Nup8 70.0 1.2E+02 0.0026 30.0 22.1 76 284-361 390-465 (566)
371 PRK15180 Vi polysaccharide bio 69.4 1E+02 0.0022 29.0 14.7 120 207-329 299-421 (831)
372 PF11848 DUF3368: Domain of un 68.9 22 0.00048 21.2 5.1 33 310-342 13-45 (48)
373 PF10579 Rapsyn_N: Rapsyn N-te 68.7 19 0.00041 24.2 4.9 55 27-82 10-65 (80)
374 PF14689 SPOB_a: Sensor_kinase 68.5 12 0.00026 23.8 4.0 24 201-224 27-50 (62)
375 PRK13342 recombination factor 67.8 1.1E+02 0.0024 28.8 17.9 21 107-127 244-264 (413)
376 PRK14956 DNA polymerase III su 67.7 99 0.0021 29.6 11.2 31 96-126 251-281 (484)
377 COG0735 Fur Fe2+/Zn2+ uptake r 67.7 44 0.00096 25.8 7.7 66 8-75 5-70 (145)
378 PF09670 Cas_Cas02710: CRISPR- 67.2 1.1E+02 0.0023 28.4 12.0 56 170-226 139-198 (379)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 67.2 51 0.0011 24.7 9.5 41 78-118 81-124 (126)
380 smart00638 LPD_N Lipoprotein N 67.2 1.4E+02 0.003 29.6 26.3 64 126-193 308-371 (574)
381 KOG2659 LisH motif-containing 66.1 78 0.0017 26.5 9.3 100 19-118 21-128 (228)
382 cd08819 CARD_MDA5_2 Caspase ac 66.1 41 0.00088 23.2 6.4 38 346-389 48-85 (88)
383 KOG1114 Tripeptidyl peptidase 64.9 1.8E+02 0.0039 30.2 14.8 50 371-420 1232-1282(1304)
384 PF14689 SPOB_a: Sensor_kinase 64.6 26 0.00055 22.3 4.9 22 304-325 28-49 (62)
385 KOG2297 Predicted translation 64.6 1E+02 0.0022 27.2 22.1 74 271-354 262-341 (412)
386 PF11838 ERAP1_C: ERAP1-like C 64.5 1.1E+02 0.0023 27.4 19.1 82 213-294 146-231 (324)
387 KOG4507 Uncharacterized conser 64.2 55 0.0012 31.6 8.7 113 10-123 196-313 (886)
388 PF04190 DUF410: Protein of un 63.7 99 0.0021 26.8 19.4 83 262-363 88-170 (260)
389 smart00028 TPR Tetratricopepti 63.7 14 0.00031 18.3 3.4 25 96-120 4-28 (34)
390 PF11846 DUF3366: Domain of un 62.3 55 0.0012 26.7 7.9 35 330-364 140-174 (193)
391 PF12862 Apc5: Anaphase-promot 61.8 52 0.0011 23.0 6.7 54 172-225 8-69 (94)
392 COG5159 RPN6 26S proteasome re 61.6 1.1E+02 0.0024 26.7 16.6 213 99-326 9-253 (421)
393 cd00280 TRFH Telomeric Repeat 60.6 71 0.0015 25.7 7.5 23 241-263 120-142 (200)
394 PF10255 Paf67: RNA polymerase 60.1 1.1E+02 0.0023 28.6 9.7 54 66-119 128-190 (404)
395 PF13762 MNE1: Mitochondrial s 60.1 78 0.0017 24.4 12.6 81 63-143 42-130 (145)
396 PRK14958 DNA polymerase III su 60.0 1.7E+02 0.0037 28.4 11.9 30 97-127 250-279 (509)
397 COG5108 RPO41 Mitochondrial DN 59.7 1.6E+02 0.0034 29.3 10.8 75 269-346 33-115 (1117)
398 KOG1941 Acetylcholine receptor 59.3 1.4E+02 0.003 27.1 19.9 223 34-257 16-271 (518)
399 KOG4567 GTPase-activating prot 59.1 63 0.0014 28.4 7.5 48 217-264 263-310 (370)
400 PRK10564 maltose regulon perip 58.9 23 0.0005 30.9 5.0 31 165-195 260-290 (303)
401 COG0735 Fur Fe2+/Zn2+ uptake r 58.4 84 0.0018 24.3 7.8 29 168-196 26-54 (145)
402 smart00386 HAT HAT (Half-A-TPR 58.3 24 0.00053 18.0 3.9 28 384-412 1-28 (33)
403 KOG3807 Predicted membrane pro 58.1 1.4E+02 0.003 26.7 12.7 49 310-359 286-336 (556)
404 PF09454 Vps23_core: Vps23 cor 57.9 35 0.00075 22.0 4.6 49 368-417 6-54 (65)
405 PF14853 Fis1_TPR_C: Fis1 C-te 57.6 33 0.00071 21.0 4.3 21 342-362 9-29 (53)
406 PF11817 Foie-gras_1: Foie gra 57.1 60 0.0013 27.8 7.5 58 339-396 183-244 (247)
407 KOG4507 Uncharacterized conser 57.1 66 0.0014 31.1 7.9 103 312-417 620-722 (886)
408 PF09868 DUF2095: Uncharacteri 56.9 39 0.00085 24.4 5.0 23 66-88 67-89 (128)
409 PF12926 MOZART2: Mitotic-spin 55.9 64 0.0014 22.1 7.8 41 148-188 29-69 (88)
410 PF06552 TOM20_plant: Plant sp 55.8 1.1E+02 0.0023 24.7 9.2 12 368-379 111-122 (186)
411 KOG1586 Protein required for f 55.6 1.3E+02 0.0028 25.5 17.8 27 170-196 162-188 (288)
412 KOG4077 Cytochrome c oxidase, 54.8 88 0.0019 23.4 8.8 48 144-191 66-113 (149)
413 KOG0890 Protein kinase of the 54.7 4.1E+02 0.009 31.1 24.6 149 98-256 1388-1542(2382)
414 PF08780 NTase_sub_bind: Nucle 54.6 67 0.0015 24.0 6.4 13 280-292 6-18 (124)
415 PRK10564 maltose regulon perip 54.4 34 0.00073 30.0 5.3 44 366-409 252-296 (303)
416 KOG2297 Predicted translation 54.3 1.6E+02 0.0034 26.1 16.3 17 164-180 323-339 (412)
417 PRK10941 hypothetical protein; 53.6 1.5E+02 0.0033 25.8 10.7 61 165-226 184-244 (269)
418 KOG4567 GTPase-activating prot 53.5 1E+02 0.0022 27.2 7.9 70 319-394 263-342 (370)
419 PF10345 Cohesin_load: Cohesin 53.5 2.5E+02 0.0053 28.2 35.1 161 28-189 63-252 (608)
420 PF09454 Vps23_core: Vps23 cor 53.2 46 0.00099 21.5 4.6 48 297-345 6-53 (65)
421 PF10366 Vps39_1: Vacuolar sor 52.1 89 0.0019 22.7 9.2 27 95-121 41-67 (108)
422 PF11663 Toxin_YhaV: Toxin wit 52.1 17 0.00036 27.4 2.7 21 211-231 109-129 (140)
423 cd08812 CARD_RIG-I_like Caspas 51.4 79 0.0017 21.9 6.5 50 22-75 32-81 (88)
424 PF12862 Apc5: Anaphase-promot 51.4 82 0.0018 22.0 7.6 19 344-362 51-69 (94)
425 PF11817 Foie-gras_1: Foie gra 50.9 47 0.001 28.5 5.9 21 66-86 184-204 (247)
426 PF04190 DUF410: Protein of un 50.8 1.7E+02 0.0036 25.4 14.7 74 12-86 37-116 (260)
427 KOG2396 HAT (Half-A-TPR) repea 50.6 2.3E+02 0.0051 27.1 35.5 397 20-431 101-559 (568)
428 KOG1258 mRNA processing protei 49.6 2.6E+02 0.0056 27.3 36.4 177 263-448 296-485 (577)
429 PF01347 Vitellogenin_N: Lipop 49.5 2.8E+02 0.0062 27.7 21.0 59 130-190 348-406 (618)
430 PHA02875 ankyrin repeat protei 49.4 2.3E+02 0.0049 26.5 15.2 51 65-117 37-89 (413)
431 PF13934 ELYS: Nuclear pore co 48.7 1.7E+02 0.0036 24.8 11.0 53 168-223 114-166 (226)
432 PF15297 CKAP2_C: Cytoskeleton 47.8 1.2E+02 0.0026 27.3 7.7 64 76-139 119-186 (353)
433 PRK13341 recombination factor 47.6 3.3E+02 0.0072 27.9 17.0 78 104-181 269-352 (725)
434 PRK11639 zinc uptake transcrip 46.4 1.5E+02 0.0033 23.6 7.7 62 324-387 16-77 (169)
435 COG4941 Predicted RNA polymera 45.9 2.3E+02 0.0049 25.6 11.6 118 279-400 271-395 (415)
436 cd08789 CARD_IPS-1_RIG-I Caspa 45.6 97 0.0021 21.2 5.8 53 21-79 29-81 (84)
437 PRK11639 zinc uptake transcrip 45.6 1.4E+02 0.003 23.8 7.3 63 12-76 14-76 (169)
438 PF10255 Paf67: RNA polymerase 45.4 2.6E+02 0.0057 26.1 12.8 22 237-258 127-148 (404)
439 PRK11619 lytic murein transgly 45.3 3.4E+02 0.0074 27.4 39.4 322 59-394 98-463 (644)
440 smart00638 LPD_N Lipoprotein N 45.3 3.2E+02 0.0069 27.1 21.9 60 196-260 309-368 (574)
441 KOG3677 RNA polymerase I-assoc 44.7 2.1E+02 0.0045 26.6 8.7 58 268-326 239-299 (525)
442 cd00280 TRFH Telomeric Repeat 44.6 1.7E+02 0.0037 23.7 14.0 47 76-122 85-140 (200)
443 PRK08691 DNA polymerase III su 44.4 3.1E+02 0.0067 27.9 10.7 103 4-130 179-282 (709)
444 COG4003 Uncharacterized protei 44.2 91 0.002 21.0 4.9 26 30-55 37-62 (98)
445 KOG0687 26S proteasome regulat 43.9 2.4E+02 0.0052 25.3 17.3 108 23-136 37-151 (393)
446 PF11838 ERAP1_C: ERAP1-like C 43.8 2.4E+02 0.0052 25.2 21.6 81 144-227 147-231 (324)
447 KOG0991 Replication factor C, 43.4 2.1E+02 0.0045 24.4 12.5 82 148-232 180-273 (333)
448 KOG3677 RNA polymerase I-assoc 43.1 2.8E+02 0.006 25.8 9.2 58 62-120 237-299 (525)
449 PF09868 DUF2095: Uncharacteri 43.0 1.2E+02 0.0026 22.1 5.7 43 376-419 67-109 (128)
450 COG0790 FOG: TPR repeat, SEL1 42.3 2.4E+02 0.0051 24.8 24.6 85 317-409 173-276 (292)
451 PRK14951 DNA polymerase III su 42.3 3.5E+02 0.0075 27.2 10.8 30 96-126 254-283 (618)
452 PF04762 IKI3: IKI3 family; I 41.9 4.6E+02 0.01 28.0 13.0 24 26-49 696-719 (928)
453 PF05944 Phage_term_smal: Phag 41.9 1.5E+02 0.0033 22.4 7.0 29 26-54 50-78 (132)
454 PF14669 Asp_Glu_race_2: Putat 41.8 1.9E+02 0.0042 23.6 16.7 56 339-394 137-205 (233)
455 COG4003 Uncharacterized protei 41.5 1.1E+02 0.0024 20.7 5.3 35 376-411 37-71 (98)
456 PF10366 Vps39_1: Vacuolar sor 41.4 1.4E+02 0.0029 21.7 8.1 27 372-398 41-67 (108)
457 PF11768 DUF3312: Protein of u 41.4 3.4E+02 0.0075 26.4 10.9 23 269-291 413-435 (545)
458 KOG3364 Membrane protein invol 41.2 1.6E+02 0.0035 22.5 8.6 24 203-226 77-100 (149)
459 PF07443 HARP: HepA-related pr 40.9 9.7 0.00021 23.4 0.1 35 384-418 6-40 (55)
460 COG5108 RPO41 Mitochondrial DN 40.9 1.6E+02 0.0036 29.1 7.9 90 339-431 33-131 (1117)
461 PF10475 DUF2450: Protein of u 39.4 2.7E+02 0.0059 24.6 10.3 26 96-121 130-155 (291)
462 KOG0686 COP9 signalosome, subu 39.3 3.2E+02 0.007 25.4 14.6 66 197-262 150-217 (466)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 39.3 1.6E+02 0.0035 22.0 8.9 44 352-395 81-124 (126)
464 PRK13184 pknD serine/threonine 39.2 5E+02 0.011 27.6 26.6 343 31-397 482-867 (932)
465 PRK09462 fur ferric uptake reg 38.3 1.9E+02 0.004 22.4 7.6 36 212-247 32-67 (148)
466 PF12926 MOZART2: Mitotic-spin 38.0 1.3E+02 0.0029 20.7 7.9 40 218-257 29-68 (88)
467 COG4259 Uncharacterized protei 37.6 1.5E+02 0.0033 21.1 5.9 35 62-96 74-108 (121)
468 PF09670 Cas_Cas02710: CRISPR- 37.2 3.4E+02 0.0075 25.2 12.4 55 205-260 139-197 (379)
469 PF14853 Fis1_TPR_C: Fis1 C-te 37.0 1E+02 0.0022 18.9 5.5 35 376-412 7-41 (53)
470 COG2909 MalT ATP-dependent tra 36.9 5E+02 0.011 27.0 26.8 213 144-359 432-684 (894)
471 PF02631 RecX: RecX family; I 36.8 1.7E+02 0.0037 21.6 11.2 98 109-211 8-106 (121)
472 KOG1114 Tripeptidyl peptidase 36.6 5.3E+02 0.012 27.2 12.7 49 198-246 1232-1281(1304)
473 KOG1308 Hsp70-interacting prot 36.5 35 0.00075 30.4 2.8 90 34-125 124-214 (377)
474 PF04910 Tcf25: Transcriptiona 36.4 3.5E+02 0.0075 24.9 20.1 57 271-327 110-167 (360)
475 KOG0686 COP9 signalosome, subu 36.3 3.6E+02 0.0078 25.1 14.6 91 164-256 152-253 (466)
476 PF15469 Sec5: Exocyst complex 36.0 2.3E+02 0.005 22.8 10.3 24 98-121 91-114 (182)
477 PF13934 ELYS: Nuclear pore co 35.6 2.7E+02 0.0059 23.5 15.6 103 200-311 79-184 (226)
478 PF11768 DUF3312: Protein of u 35.4 4.3E+02 0.0093 25.7 12.8 94 63-156 411-507 (545)
479 PHA03100 ankyrin repeat protei 35.1 4.1E+02 0.0089 25.4 11.5 235 9-256 48-304 (480)
480 smart00777 Mad3_BUB1_I Mad3/BU 34.9 2E+02 0.0042 21.6 9.0 41 77-117 80-123 (125)
481 cd07153 Fur_like Ferric uptake 34.8 1.2E+02 0.0026 22.0 5.2 47 340-387 6-52 (116)
482 COG5191 Uncharacterized conser 34.7 1.3E+02 0.0028 26.7 5.8 75 332-408 105-179 (435)
483 PF03745 DUF309: Domain of unk 34.6 1.2E+02 0.0027 19.2 5.2 15 346-360 11-25 (62)
484 PRK09857 putative transposase; 34.6 3.3E+02 0.0071 24.2 10.0 66 337-404 209-274 (292)
485 cd07153 Fur_like Ferric uptake 34.4 1.2E+02 0.0025 22.2 5.1 44 204-247 7-50 (116)
486 KOG4642 Chaperone-dependent E3 33.9 3E+02 0.0066 23.5 11.2 117 242-360 20-143 (284)
487 KOG1308 Hsp70-interacting prot 33.8 54 0.0012 29.3 3.5 98 311-412 126-224 (377)
488 COG2909 MalT ATP-dependent tra 33.6 5.7E+02 0.012 26.6 30.3 218 104-324 426-684 (894)
489 PRK07003 DNA polymerase III su 33.6 5.6E+02 0.012 26.5 14.5 34 92-126 245-278 (830)
490 cd00245 Glm_e Coenzyme B12-dep 33.4 65 0.0014 30.1 4.1 44 248-291 27-70 (428)
491 KOG4279 Serine/threonine prote 32.9 5.5E+02 0.012 26.2 14.0 240 8-296 147-398 (1226)
492 PF09986 DUF2225: Uncharacteri 32.5 3E+02 0.0065 23.0 11.2 25 340-364 171-195 (214)
493 PRK06645 DNA polymerase III su 32.4 4.8E+02 0.01 25.4 10.4 102 4-126 188-290 (507)
494 KOG0376 Serine-threonine phosp 32.0 1.3E+02 0.0029 28.3 5.8 113 22-138 2-115 (476)
495 KOG3636 Uncharacterized conser 31.8 4.4E+02 0.0095 24.8 16.0 89 223-311 174-272 (669)
496 KOG0292 Vesicle coat complex C 31.8 2.4E+02 0.0052 29.2 7.7 127 244-398 655-781 (1202)
497 KOG0292 Vesicle coat complex C 31.5 5.1E+02 0.011 27.0 9.8 131 68-226 651-782 (1202)
498 PF01475 FUR: Ferric uptake re 31.0 1.2E+02 0.0026 22.3 4.7 47 374-420 11-57 (120)
499 PF09986 DUF2225: Uncharacteri 30.9 3.2E+02 0.0069 22.9 12.0 66 335-400 119-195 (214)
500 PRK13342 recombination factor 30.8 4.6E+02 0.01 24.7 19.6 37 277-313 243-279 (413)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-66 Score=512.39 Aligned_cols=423 Identities=16% Similarity=0.233 Sum_probs=408.2
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLL 100 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll 100 (460)
..+...+..++..+++.|++++|+++|++|...+..+++...++.++..|.+.|.+++|.++|+.|+. |+..+|+.++
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHH
Confidence 44677889999999999999999999999999986677888889999999999999999999999998 9999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh
Q 012577 101 ANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179 (460)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (460)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+ ++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG--DNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 68899999999999999999999999999999
Q ss_pred hcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 012577 258 CES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP 334 (460)
Q Consensus 258 ~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 334 (460)
|.. .|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 987 57889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
.+|+++|.+|++.|++++|.++|++|.+ .++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999965 479999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHH
Q 012577 415 YINAKT--PAYGIRDRMRADNVFPNKALAAQVAQ 446 (460)
Q Consensus 415 ~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~ 446 (460)
|++.|+ .+..++..|++.|+.||..+|+.|..
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999 79999999999999999999999843
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-65 Score=504.98 Aligned_cols=437 Identities=17% Similarity=0.234 Sum_probs=392.8
Q ss_pred chHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHH
Q 012577 6 ISIHSTLTKYAEEGN-DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQ 84 (460)
Q Consensus 6 ~~~~~~l~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (460)
.+...+++.|.+.|. +++...+..++..+.+.|..++|+++|+.|.. |+..+|+.++.+|++.|+++.|.++|+
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 456678888888875 45666677788888899999999999988753 788999999999999999999999999
Q ss_pred hcccC--CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCC
Q 012577 85 KIPES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLT 161 (460)
Q Consensus 85 ~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~ 161 (460)
.|.+. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+ ++|.++|+.|.+.|+.||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 98765 678999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKS--EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999999976 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 240 PLYAELGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
.+|++.|++++|.++|+.|.. .|+..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999876 58889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864 478999999999999999999999999999999
Q ss_pred HHcCCCccHHHHHHHHHHHHh----c------------C---------CchhhhHHHHHhCCCCcCHHHHHHHHHHHHH
Q 012577 397 RQVGYVARFKQFQTLVQAYIN----A------------K---------TPAYGIRDRMRADNVFPNKALAAQVAQVDAF 450 (460)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~----~------------g---------~~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 450 (460)
.+.|+.||..+|++|+..|.+ + | ..|..+|++|.+.|+.||..||..+ +.++
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v--L~cl 857 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV--LGCL 857 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHh
Confidence 999999999999999866542 1 1 1367788999999999999999988 4555
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-62 Score=490.99 Aligned_cols=438 Identities=16% Similarity=0.175 Sum_probs=341.2
Q ss_pred chHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
.....++++|...|..|+..++..+++.++..+++..+.+++..+.+.+ +.++..+++.++.+|+++|+++.|.++|+.
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 3455677788778888888888888888888888888888888888776 778889999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 86 IPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 86 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ +.+.+++..|.+.|+.||..+
T Consensus 248 m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 248 MPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 997 89999999999999999999999999999999999999999999999999998 888999999999999999888
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|++|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 8888888888888888888887775 466777777777777777777777777777777777766666666666655
Q ss_pred cCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----------------------------
Q 012577 245 LGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT---------------------------- 293 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------- 293 (460)
.|+++.+.++++.+.. .|+..+|++++.+|++.|++++|.++|++|.+.
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555554443 234445555555555555555555555544331
Q ss_pred --ccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHH
Q 012577 294 --WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFS 371 (460)
Q Consensus 294 --~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 371 (460)
++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+|..++++++.+|+++|++++|.++|+.+ .||..
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~ 555 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVV 555 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChh
Confidence 2455555555555555555555555555555555555555555566666777777777777776654 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHH-hCCCCcCHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMR-ADNVFPNKALAAQVAQVD 448 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~-~~~~~p~~~~~~~l~~~~ 448 (460)
+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+ ++..+++.|+ ..|+.|+..+|..+ ++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l--v~ 633 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV--VD 633 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH--HH
Confidence 9999999999999999999999999999999999999999999999998 7888899998 67999999999998 77
Q ss_pred HH-hhhhhhhh
Q 012577 449 AF-RKTAVSEL 458 (460)
Q Consensus 449 ~~-~~~~~~~~ 458 (460)
.+ +.|..+++
T Consensus 634 ~l~r~G~~~eA 644 (857)
T PLN03077 634 LLGRAGKLTEA 644 (857)
T ss_pred HHHhCCCHHHH
Confidence 77 66655544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-61 Score=475.68 Aligned_cols=432 Identities=15% Similarity=0.181 Sum_probs=399.3
Q ss_pred hHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 7 SIHSTLTKYAEEG-NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 7 ~~~~~l~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
....+++.|...+ ..++..++..++..+.+.++++.|.+++..+...+ +.|+..+|+.++.+|++.|+++.|.++|++
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 3445666665543 67899999999999999999999999999999887 888999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 86 IPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 86 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
|+. ||..+||+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+..+. ..+.+++..+.+.|+.||..+
T Consensus 184 m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 184 MPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred CCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 997 99999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|++||++|++.|++++|.++|++|. ++|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999997 679999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 245 LGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
.|++++|.+++..+.+ .|+..+|++++++|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998876 57889999999999999999999999999975 6899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..++.|+..+|+.++.+|++.|++++|.+++++| ++
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~ 490 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PF 490 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CC
Confidence 999999999999999999999999999999999999999888899999999999999999999999999998865 57
Q ss_pred CccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcC-HHHHHHHHHHHHH-hhhhhh
Q 012577 402 VARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPN-KALAAQVAQVDAF-RKTAVS 456 (460)
Q Consensus 402 ~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~-~~~~~~l~~~~~~-~~~~~~ 456 (460)
.|+..+|++|+.+|...|+ .+..+++.+. ++.|+ ..+|..| ++.+ +.|..+
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L--~~~y~~~G~~~ 545 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVL--LNLYNSSGRQA 545 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHH--HHHHHhCCCHH
Confidence 8999999999999999998 4556666664 56675 5688888 4544 444433
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.3e-60 Score=474.34 Aligned_cols=436 Identities=14% Similarity=0.115 Sum_probs=362.9
Q ss_pred chHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
.....+++.+.+.|.+++..++..++..+.+.+.++.+.+++..+...+ ..++...++.++..|++.|+++.|.++|++
T Consensus 68 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~ 146 (857)
T PLN03077 68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGK 146 (857)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhc
Confidence 3455677788888888999999999999988889999999999888776 567888899999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH---------------------------
Q 012577 86 IPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY--------------------------- 138 (460)
Q Consensus 86 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--------------------------- 138 (460)
|+. ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|
T Consensus 147 m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 147 MPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred CCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 987 899999999999999999999999999999989888887776655555
Q ss_pred --------HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 139 --------KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS 209 (460)
Q Consensus 139 --------~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 209 (460)
++.|+ +.|..+|+.|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 44455 55555555554 456667777777777777777777777788888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012577 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKR 289 (460)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 289 (460)
.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .|+..+|+++|.+|++.|++++|.++|++
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88888888888888888888888889999999999999999999999885 57888999999999999999999999999
Q ss_pred HHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 290 MSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 290 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d 454 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KD 454 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888743 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------------------------------
Q 012577 370 FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY------------------------------------------------ 401 (460)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~------------------------------------------------ 401 (460)
..+|+.++.+|++.|+.++|.++|++|.. ++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 55666666666666666666666666653 23
Q ss_pred -----------------CccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHHHHHH-hhhhhhh
Q 012577 402 -----------------VARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQVAQVDAF-RKTAVSE 457 (460)
Q Consensus 402 -----------------~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~~ 457 (460)
.||..+||++|.+|++.|+ .+..++++|.+.|+.||..||..+ +.++ +.+.+++
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l--l~a~~~~g~v~e 607 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL--LCACSRSGMVTQ 607 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH--HHHHhhcChHHH
Confidence 3455667888888888888 788999999999999999999999 6666 5555544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-59 Score=457.07 Aligned_cols=413 Identities=12% Similarity=0.158 Sum_probs=392.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcc
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
...++..+.+.|..++..+++.++..+++.|+++.|.++|+.|. .|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999885 3688899999999999999999999999997
Q ss_pred cC--CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 88 ES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 88 ~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
.. .|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|+ ++|.++|+.|. .+|..+
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt 292 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVA 292 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhH
Confidence 65 678999999999999999999999999999999999999999999999999999 99999999996 579999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 245 LGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
.|++++|.++|+.|. .|+..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.
T Consensus 373 ~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 373 WGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred CCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999999986 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 325 MAE-SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 325 ~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|++++.+|...|+++.|..+++++.+.+ +.
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~ 526 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PE 526 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CC
Confidence 986 699999999999999999999999999998765 678999999999999999999999999999998654 44
Q ss_pred cHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCC
Q 012577 404 RFKQFQTLVQAYINAKT--PAYGIRDRMRADNVF 435 (460)
Q Consensus 404 ~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~ 435 (460)
+..+|+.|+..|++.|+ .+..+++.|++.|+.
T Consensus 527 ~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 67899999999999999 789999999999985
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5e-26 Score=234.05 Aligned_cols=408 Identities=11% Similarity=-0.028 Sum_probs=222.4
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLA 101 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~ 101 (460)
++..+..+...+...|++++|.+.|+.+.... +.+...+..++..+...|++++|.+.|+++....| +..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34444445555555555555555555544432 22333444455555555555555555555443322 3444555555
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (460)
.+.+.|++++|...|+++.+.+ +.+...+..+...+...|+ ++|..+++.+.+.. +.+...|..+..++...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554442 2234444455555555555 55555555555432 3445555555555555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
|...|+.+.+.. +.+...+..+..++.+.|++++|...|+++.+... .+..++..+...+...|++++|..+++.+..
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666665555443 33444555555555555666666666655554432 2344555555555666666666666555544
Q ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012577 261 --NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338 (460)
Q Consensus 261 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (460)
.++...+..+...+.+.|++++|.+.|+.+...+ |+..++..++..+.+.|++++|.+.++.+.+.. +.+...+.
T Consensus 698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2233445555556666666666666666665543 233455556666666666666666666665542 44556666
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
.+...|...|++++|.++|+++.+.. +++...++.+...+.+.|+ .+|+.+++++.+.. +.+..++..+...+...
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 66666666666666666666665543 2344556666666666666 55666666666543 44455566666666666
Q ss_pred CC--chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 419 KT--PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 419 g~--~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
|+ .+..+++.+.+.+-. +..++..+
T Consensus 851 g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 66 455566666654422 55555555
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.2e-26 Score=234.64 Aligned_cols=398 Identities=14% Similarity=0.028 Sum_probs=349.6
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTL 99 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l 99 (460)
+.+...+..+...+...|++++|.+.|+.+.... +.+...+..+...+.+.|+.++|..+++++....| +...+..+
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 573 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL 573 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHH
Confidence 4456677888888899999999999999998765 55777888999999999999999999999866544 56778889
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDL 178 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (460)
+..+.+.|++++|..+++.+.+.. +.+...|..+..++...|+ ++|...++.+.+.. +.+...+..+..++.+.|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999998764 5578899999999999999 99999999998764 55677889999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...++.+
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998765 55688999999999999999999999999988764 46778888999999999999999999987
Q ss_pred cc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 012577 259 ES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAW 337 (460)
Q Consensus 259 ~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 337 (460)
.. .|+..++..++..+.+.|++++|.+.++.+.+..+ .+...+..+...|...|++++|...|+.+.+.. +.++.++
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 807 (899)
T TIGR02917 730 LKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVL 807 (899)
T ss_pred HhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 65 66667888899999999999999999999998754 378899999999999999999999999999874 6788999
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 338 DALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
..+...+.+.|+ .+|..+++++.+..+- +..++..+...+...|++++|.++++++.+.+ +.+..++..+..++.+
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLAPN--IPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHH
Confidence 999999999999 8899999999876543 34577788889999999999999999999987 5589999999999999
Q ss_pred cCC--chhhhHHHHH
Q 012577 418 AKT--PAYGIRDRMR 430 (460)
Q Consensus 418 ~g~--~~~~~~~~m~ 430 (460)
.|+ .+..+++.|.
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999 6777777765
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.5e-22 Score=183.46 Aligned_cols=246 Identities=13% Similarity=0.097 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH----HHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR----WTCRLL 238 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 238 (460)
..+..+...|.+.|++++|.++|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 356677778888888888888888887653 456777888888888888888888888888776543322 234556
Q ss_pred HHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 239 LPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
...+...|++++|...++++.. .| +...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|+++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 6677778888888888877654 33 344677778888888888888888888887544333456788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK---RGDIHSTEKIF 393 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 393 (460)
+|...++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+..++..++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 999999988875 366666788888888999999999999888764 4777788877777664 45888899999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 394 HRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 394 ~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
++|.+.++.|++. ..|.++|.
T Consensus 342 ~~~~~~~~~~~p~------~~c~~cg~ 362 (389)
T PRK11788 342 RDLVGEQLKRKPR------YRCRNCGF 362 (389)
T ss_pred HHHHHHHHhCCCC------EECCCCCC
Confidence 9888877776665 33555554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.9e-22 Score=182.40 Aligned_cols=288 Identities=15% Similarity=0.139 Sum_probs=164.9
Q ss_pred HHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---hhhhHHHHHHHHhcCc-h
Q 012577 70 IAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT---SFACNQLLILYKRLDK-K 144 (460)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~-~ 144 (460)
+...|++++|...|+++....| +..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+ +
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3445555666666665554433 234455555555666666666666665554321111 1334455555555555 5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHH
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
+|..+|+.+.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5666666555442 34455666666666666666666666666665432221 123444555566666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW--LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 297 (460)
+++.+... .+...+..+...+.+.|++++|.++++++.. .|+ ..+++.++.+|.+.|++++|...++.+.+.. |
T Consensus 204 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 66665432 2334555566666666666666666666554 332 2345666666777777777777777666643 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHh
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE---GGEVEKADSILLKAQQQ 363 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~ 363 (460)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 4445566666777777777777777766654 4666666666655553 34666777777666543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-20 Score=167.94 Aligned_cols=410 Identities=14% Similarity=0.096 Sum_probs=317.0
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhccc--------------------------------CCCChhhhHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKK--------------------------------LDFIERDYASCLDLI 70 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~ 70 (460)
.......+.+.+.+.|++.+|.+.....-..++ .+--.++|+.+.+.+
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 344567788888899999999876655443320 112345677788888
Q ss_pred HHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH-HHHHHhcCc-hHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL-LILYKRLDK-KKVA 147 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~-~~a~ 147 (460)
-..|++++|+.+++.+.+..| .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+- .......|. .+|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 888888888888888777645 4678888888888888888888888888775 3555444333 334445566 7777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD-SSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
..|.+..... +-=...|+.|.-.+...|++..|++.|++.... .|+ ...|-.|.+.|-..+.++.|...|.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 7776666542 223456888888888999999999999998876 344 678888999999999999999998887764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHH
Q 012577 227 NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTA 304 (460)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 304 (460)
.. -....+..+...|...|.++.|.+.+++... +|+ ...|+.|..++-..|++.+|.+.|+..+..... ...+.+.
T Consensus 282 rp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 282 RP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 32 2456777888888999999999999998776 554 558999999999999999999999998886443 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhc
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIMDQYAKR 383 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 383 (460)
|...|...|.+++|..+|....+-. +--...++.|...|-..|++++|+..+++++. +.|+. ..|+.+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999988852 33456788999999999999999999998875 55653 5788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCH-HHHHHH
Q 012577 384 GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNK-ALAAQV 444 (460)
Q Consensus 384 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~-~~~~~l 444 (460)
|+.+.|.+.+.+.+..+ +.=...++.|...|-.+|+-..+|-.--....++||. ..|.-+
T Consensus 436 g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 99999999999999865 4456788999999999999666666555666788884 344433
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.4e-19 Score=172.82 Aligned_cols=333 Identities=10% Similarity=-0.050 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
...+..++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|...|+++....| +...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3456677788888999999999998888775 44556677777777889999999999999887755 46678888889
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
+.+.|++++|...+++..+.. +.+...+..+..++...|+ ++|...++.+.... +.+...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998863 3456777888888888888 88998888876653 2333344333 347889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHH
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ----VARIWKL 257 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 257 (460)
...++.+......++...+..+..++...|++++|+..++++.+.... +...+..+..++...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999877643344555566677888999999999999999876543 56777888999999999886 7888887
Q ss_pred hcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 012577 258 CES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP- 334 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 334 (460)
... .| +...+..+...+.+.|++++|...+++..+..+. +...+..+...+.+.|++++|...++.+.+.+ |+.
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 665 45 5567888899999999999999999998886543 56677788899999999999999999988753 443
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
..+..+..++...|+.++|...|+++.+..+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3444456778899999999999999877653
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.1e-18 Score=169.95 Aligned_cols=397 Identities=10% Similarity=-0.024 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHc
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVA 105 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~ 105 (460)
+......+.+.|++++|+..|+...... |++..|..+..+|.+.|++++|++.++......| +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4455666788899999999999988654 5677899999999999999999999999877655 46788999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHH-HHHhcCchHHHHHHHH-------------HHH-c-------------C
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLI-LYKRLDKKKVADVLLL-------------MEK-E-------------N 157 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~a~~~~~~-------------~~~-~-------------~ 157 (460)
.|++++|+.-|......+...+.. ...++. .+.......+...+.. ... . .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999999887765542111111 111111 1111000111111100 000 0 0
Q ss_pred CCCCH-HHHHHHHHH---HhhcCChhHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 012577 158 VKLTQ-FSYKILIDI---KGQSNDLTGMDQVVEAMKSEG-I-EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH 231 (460)
Q Consensus 158 ~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (460)
..+.. ..+..+... ....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|++..+.... .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 00100 000111100 123467899999999998764 2 234567888888899999999999999999876432 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHH
Q 012577 232 RWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVY 309 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 309 (460)
...|..+...+...|++++|...|+.... .| +...+..+...+...|++++|...|++..+..+. +...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 56788888999999999999999987655 44 5668888999999999999999999999886543 667788888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc----CH-HHHHHHHHHHHhcC
Q 012577 310 ADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP----MF-SSYMLIMDQYAKRG 384 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~g 384 (460)
.+.|++++|...++...+. .+.+...++.+...+...|++++|.+.|++..+..+-.. +. ..++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 9999999999999999876 355678899999999999999999999999876542111 11 11222223344569
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 385 DIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 385 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
++++|.+++++..+.+ +.+...+..+...+...|+ .|...+++..+
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999988875 5566688999999999999 45556655443
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.6e-18 Score=179.59 Aligned_cols=392 Identities=11% Similarity=0.053 Sum_probs=268.8
Q ss_pred HHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch---hHHHH----------
Q 012577 32 ANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE---VVYRT---------- 98 (460)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~---------- 98 (460)
..+...|++++|+..|+...... |.+...+..+...+.+.|++++|+..|++.....|+. ..|..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44567788899999998888764 4567788888888889999999999988876654432 12221
Q ss_pred --HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH-----
Q 012577 99 --LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID----- 170 (460)
Q Consensus 99 --ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~----- 170 (460)
....+.+.|++++|...|++..+.. +.+...+..+..++...|+ ++|.+.|++..+.. +.+...+..+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 2345677888999999998888764 3356666677778888888 88888888877653 233333333333
Q ss_pred -------------------------------------HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 012577 171 -------------------------------------IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 171 -------------------------------------~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
.+...|++++|++.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445566666776666666553 23455556666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC---CCH---------HHHHHHHHHHHccCCHH
Q 012577 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWL---------DVCMAAIEAWGKLNKVE 281 (460)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---------~~~~~li~~~~~~~~~~ 281 (460)
++|...++++.+.... +...+..+...+...++.++|...++.+... +.. ..+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 7777777766654322 3333334444455666677776666655321 111 11223455677778888
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+|..+++. .+++...+..+...+.+.|++++|...|+...+.. +.+...+..+...|...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88887762 23456677888999999999999999999999874 5578899999999999999999999999887
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--Cc---cHHHHHHHHHHHHhcCC--chhhhH-HHHHhCC
Q 012577 362 QQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY--VA---RFKQFQTLVQAYINAKT--PAYGIR-DRMRADN 433 (460)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~---~~~~~~~l~~~~~~~g~--~~~~~~-~~m~~~~ 433 (460)
+..+ .+...+..+..++...|++++|.++++++....- +| +...+..+...+...|+ .|...+ ..|...|
T Consensus 665 ~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 665 ATAN--DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred ccCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 6432 2345667788889999999999999999987531 22 23466667888888888 455555 4455556
Q ss_pred CCcC
Q 012577 434 VFPN 437 (460)
Q Consensus 434 ~~p~ 437 (460)
+.|+
T Consensus 743 ~~~~ 746 (1157)
T PRK11447 743 ITPT 746 (1157)
T ss_pred CCCC
Confidence 6543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.9e-20 Score=165.30 Aligned_cols=380 Identities=13% Similarity=0.054 Sum_probs=317.9
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH-H
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT-L 99 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l 99 (460)
+--.+.+..+...+..+|++..|+.+++.+.+.. |.....|..+..++...|+.+.|...|.+.....|+.....+ +
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 3346788889999999999999999999999875 456788999999999999999999999998877777655444 4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCC
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLT-QFSYKILIDIKGQSND 177 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 177 (460)
...+...|+..+|...|.+.++.. +-=...|+.|...+...|+ ..|.+.|++..+. .|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 455566899999999999988863 2235678888888888898 8999999988875 444 5678899999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++.|...|.+..... +.....+..+...|...|+.|.|+..|++.++..+. -...|+.|..++-..|++.+|.+.+..
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 999999999988763 445788889999999999999999999999886543 346899999999999999999999998
Q ss_pred hcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Q 012577 258 CES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG-P 334 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 334 (460)
... .| ...+.+.|...|...|.++.|..+|....+..+. -....+.|...|-++|++++|..-+++.++ +.|+ .
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 765 44 5568899999999999999999999999885332 346789999999999999999999999988 4565 4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR-FKQFQTLV 412 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~ 412 (460)
..|+.+...|-..|+++.|.+.+.+++.-+ |. ...++.|...|...|++.+|+.-|++..+. +|| +..|..++
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n---Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNll 497 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN---PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLL 497 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC---cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHH
Confidence 789999999999999999999999987644 43 356788999999999999999999999985 454 44566665
Q ss_pred HHH
Q 012577 413 QAY 415 (460)
Q Consensus 413 ~~~ 415 (460)
.+.
T Consensus 498 h~l 500 (966)
T KOG4626|consen 498 HCL 500 (966)
T ss_pred HHH
Confidence 553
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1e-18 Score=169.49 Aligned_cols=332 Identities=9% Similarity=0.016 Sum_probs=271.8
Q ss_pred hhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
......++..+.+.|++++|..+++.+....| +...+..++.+....|++++|...|+++.+.. |.+...+..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33455677788899999999999999877655 45667777778888999999999999999874 34567778888888
Q ss_pred HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 139 KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 139 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
...|+ ++|...++...... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHH
Confidence 89998 99999999998863 4567788899999999999999999999887664 2334444444 3478899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHH----HHHHHHHHH
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEE----AEAVFKRMS 291 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~----a~~~~~~m~ 291 (460)
..++.+.+....++......+..++...|++++|...++.... .| +...+..+...+...|++++ |...|+...
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999988775444555566667889999999999999998765 44 56678889999999999986 899999999
Q ss_pred hcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-
Q 012577 292 KTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF- 370 (460)
Q Consensus 292 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 370 (460)
+..+. +...+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...++.+.... |+.
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~ 352 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTS 352 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccch
Confidence 86544 67889999999999999999999999999864 4567788889999999999999999999998765 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
..+..+..++...|+.++|.+.|++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 234445678899999999999999998763
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=9.4e-18 Score=173.93 Aligned_cols=372 Identities=11% Similarity=0.020 Sum_probs=285.1
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhh------------HHHHHHHHHhhCHHHHHHHHHhcc
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY------------ASCLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
.+-++..+..+...+.+.|++++|+..|+...+..+-.+....+ ......+.+.|++++|+..|+++.
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34477888888999999999999999999988765222221111 122456678899999999999987
Q ss_pred cCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH------------------------------
Q 012577 88 ESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI------------------------------ 136 (460)
Q Consensus 88 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~------------------------------ 136 (460)
...| +...+..+...+...|++++|++.|++..+... .+...+..+..
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7655 466778888999999999999999999987642 23333332222
Q ss_pred ------------HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 012577 137 ------------LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAIL 203 (460)
Q Consensus 137 ------------~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 203 (460)
.+...|+ ++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~ 535 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAY 535 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 2334455 78888888887764 3456678889999999999999999999998754 3455666666
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHH
Q 012577 204 AKHYVSGGRKEKAEAMLKEMEGDNLKEHRW---------TCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAW 274 (460)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 274 (460)
...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. ..++...+..+...+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHH
Confidence 666788999999999998875433222221 123456778899999999999983 234555678889999
Q ss_pred HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.+.|++++|+..|+...+..+. +...+..++..|...|++++|.+.++.+.+.. +.+..++..+..++...|++++|.
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999987554 78889999999999999999999999887752 345677778888999999999999
Q ss_pred HHHHHHHHhCCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 355 SILLKAQQQNKFKP----MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 355 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
++++.+....+-.| +...+..+...+...|++++|++.|++...
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999977543223 224566667889999999999999998864
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.4e-17 Score=161.58 Aligned_cols=417 Identities=11% Similarity=0.017 Sum_probs=313.6
Q ss_pred HhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhH
Q 012577 17 EEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVV 95 (460)
Q Consensus 17 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 95 (460)
....++++..+...+......|+.++|++++..+.... +.+...+..+..++...|++++|..+|++.....| +...
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a 85 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY 85 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34567899999999999999999999999999887633 45666789999999999999999999999766644 4667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (460)
+..+...+...|++++|...+++..+.. +.+.. +..+..++...|+ ++|...++++.+.. +.+...+..+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 7888889999999999999999998873 34555 7778778888888 99999999999874 4456666778888889
Q ss_pred cCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh-----CCCh---HHHHHHHHHHHhC-CCCCCHH-HH---
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDS------STQAILAKHYVS-----GGRK---EKAEAMLKEMEGD-NLKEHRW-TC--- 235 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~--- 235 (460)
.+..+.|++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 9999999999987664 2321 112222332221 2234 7788888888854 2222221 11
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHhccCC-C-H-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc---CHHHHHHHHHH
Q 012577 236 -RLLLPLYAELGKADQVARIWKLCESNP-W-L-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL---STKHYTALLKV 308 (460)
Q Consensus 236 -~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~ 308 (460)
...+.++...|++++|...|+.+...+ . + ..-..+...|...|++++|+..|+.+.+..... .......+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 111344567799999999999987642 1 1 122335778999999999999999987654221 13456667778
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMAESG-----------CHIG---PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM 374 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~-----------~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (460)
+...|++++|..+++.+.+.. -.|+ ...+..+...+...|++++|+++++++....+ .+...+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n~~l~~ 397 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GNQGLRI 397 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 899999999999999998752 0123 23456677788899999999999999987654 3456888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQVAQ 446 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~ 446 (460)
.+...+...|++++|++.+++..... |.+...+..+...+...|+ .+..+++.+.+ ..|+......|.+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 88999999999999999999999875 5567778888888888888 67778877777 5677776666633
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=8.1e-17 Score=137.49 Aligned_cols=399 Identities=13% Similarity=0.143 Sum_probs=285.8
Q ss_pred hcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhh---------------------------CHHHHHHHHHhccc
Q 012577 36 TRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLR---------------------------GLQKAESYIQKIPE 88 (460)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~a~~~~~~~~~ 88 (460)
..|....+.-+|+.|+..+ .+.++...-.++...+-.+ +-+-|.-+|+..+
T Consensus 127 S~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P- 204 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP- 204 (625)
T ss_pred hhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-
Confidence 3455666666666666665 5555555555544432211 1112334444444
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 89 SFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 89 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
.+..+|..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-... .+++.+|.+..+.||..|+|++
T Consensus 205 --KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~---K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 --KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG---KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred --CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---HHHHHHHHHhhcCCchHhHHHH
Confidence 46678999999999999999999999999988889999999999986544332 6788899999999999999999
Q ss_pred HHHHhhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHh----CCCC----CCHHHH
Q 012577 169 IDIKGQSNDLTG----MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK-AEAMLKEMEG----DNLK----EHRWTC 235 (460)
Q Consensus 169 i~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~ 235 (460)
+++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ...+ -|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998875 56778889999999999999999999999988755 4444444443 2222 245667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccC-------CCHH---HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 236 RLLLPLYAELGKADQVARIWKLCESN-------PWLD---VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
...|..|.+..+.+.|.++..-+... |+.. -|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 78889999999999999887766542 2211 2566778888889999999999999988788899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-Chh-h------------HHHHHH-------HHHHhC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG-EVE-K------------ADSILL-------KAQQQN 364 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~-~------------a~~~~~-------~~~~~~ 364 (460)
+.+....|+++-.-+++..++..|...+.....-++..+++.. ... - |..+++ ++. ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r-~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR-AQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH-hc
Confidence 9999999999999999999999886666666666666666554 110 0 111111 111 11
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHH---HHHHHHHhcCC--chhhhHHHHHhCCCCcCH
Q 012577 365 KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG-YVARFKQFQ---TLVQAYINAKT--PAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~---~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~ 438 (460)
.+. ....+.+.-.+.+.|..++|.+++.-+.+.+ --|-....| .|+++-...+. .|...++.|...++..-.
T Consensus 519 ~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 519 DWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred cCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 233 3466777788999999999999999886543 234444455 55566556565 566677777666655444
Q ss_pred HHHHHH
Q 012577 439 ALAAQV 444 (460)
Q Consensus 439 ~~~~~l 444 (460)
....-+
T Consensus 597 ~La~RI 602 (625)
T KOG4422|consen 597 GLAQRI 602 (625)
T ss_pred HHHHHH
Confidence 344443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=5.4e-17 Score=160.97 Aligned_cols=395 Identities=9% Similarity=-0.041 Sum_probs=290.4
Q ss_pred HHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 8 IHSTLTKYAEEG--NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 8 ~~~~l~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
...++..|.+.. .+.+...+..+...+...|++++|+++++...... |.+...+..++..+...|++++|...+++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555543 34556678888999999999999999999988774 55666778888999999999999999999
Q ss_pred cccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH-
Q 012577 86 IPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ- 162 (460)
Q Consensus 86 ~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~- 162 (460)
+....|+ .. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+. +.|...++.... .|+.
T Consensus 109 ~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~ 183 (765)
T PRK10049 109 LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEK 183 (765)
T ss_pred HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHH
Confidence 8777564 45 8888899999999999999999999874 3355555666667777676 778887776553 2321
Q ss_pred -----HHHHHHHHHHh-----hcCCh---hHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhCCChHHHHHHHHHH
Q 012577 163 -----FSYKILIDIKG-----QSNDL---TGMDQVVEAMKSE-GIEPDSS-TQ----AILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 163 -----~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
.....++.... ..+++ ++|++.++.+.+. .-.|+.. .+ ...+.++...|++++|+..|+.+
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 11222233222 22334 7788899988854 1123221 11 11134556779999999999999
Q ss_pred HhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhccc-
Q 012577 224 EGDNLK-EHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK- 295 (460)
Q Consensus 224 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~- 295 (460)
.+.+.. |+. ....+..+|...|++++|...|+.+.. .|. ......+..++...|++++|.+.++.+....+
T Consensus 264 l~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 264 KAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 987643 332 223357789999999999999998765 332 23456667788999999999999999987532
Q ss_pred ----------CcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 296 ----------KLS---TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 296 ----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.|+ ...+..+...+...|++++|.++++++... .+.+...+..+...+...|++++|++.++++.+
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 123 234566788899999999999999999887 366788999999999999999999999999987
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
..+ .+...+......+.+.|++++|+.+++++.+. .|+...-..+-+.+
T Consensus 422 l~P--d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 422 LEP--RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred hCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 653 23456666777889999999999999999986 45544444444444
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3.6e-16 Score=152.39 Aligned_cols=370 Identities=11% Similarity=-0.004 Sum_probs=266.8
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHH
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRT 98 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 98 (460)
..|++..+..+...+.+.|++++|++.++...... |.....+..+..++...|++++|...|..+....+ +......
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 34567788888888999999999999999988765 55677888999999999999999988876543211 1111111
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCC-----------------------------CCChhhhHHHHHHH------HhcCc
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGF-----------------------------PVTSFACNQLLILY------KRLDK 143 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~-----------------------------~~~~~~~~~ll~~~------~~~~~ 143 (460)
++..+.. ..+........+... ..+...-...+... ...+.
T Consensus 234 ~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 234 AVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence 1111110 011111111111100 00000000111111 01123
Q ss_pred -hHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012577 144 -KKVADVLLLMEKEN-VKL-TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 144 -~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
++|...|+.....+ ..| ....|+.+...+...|++++|+..|++..+.. +.+..+|..+...+...|++++|+..|
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78888998888764 233 45578888889999999999999999998764 334678889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 298 (460)
+++.+... .+..++..+...+...|++++|...|+.... .| +...+..+...+.+.|++++|+..|++..+..+. +
T Consensus 389 ~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~ 466 (615)
T TIGR00990 389 DKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-A 466 (615)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 99988653 3567888999999999999999999998765 45 5667888899999999999999999999876433 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP------LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
...++.+...+...|++++|...|+...+..-..+. ..++.....+...|++++|.++++++.+..+ .+...
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--~~~~a 544 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--ECDIA 544 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcHHH
Confidence 788999999999999999999999998875311111 1122223334457999999999999876542 33457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
+..+...+.+.|++++|++.|++..+..
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998764
No 22
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=3.6e-17 Score=140.72 Aligned_cols=392 Identities=12% Similarity=0.094 Sum_probs=278.1
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc------h
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG------E 93 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~ 93 (460)
..++-..+..+...+.....+.+|+..|+.+.++.-++.....-..+.+.+.+.+.+.+|+++++......|+ .
T Consensus 197 ldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 197 LDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred ccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 3456667777777788888888999999888887755544444455777788888899999988876655453 2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-hhHHHHHHHHhcCchHHHHHHHHHHHcCCCC------------
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSF-ACNQLLILYKRLDKKKVADVLLLMEKENVKL------------ 160 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~------------ 160 (460)
...+.+.-.+.+.|+++.|+..|+...+. .|+.. .+|..|.+++-...++..+.|..|......|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 34555666688889999999999888776 35544 4555555555444477777777776542222
Q ss_pred CHHHHHHH---------------------------------------------------------------HHHHhhcCC
Q 012577 161 TQFSYKIL---------------------------------------------------------------IDIKGQSND 177 (460)
Q Consensus 161 ~~~~~~~l---------------------------------------------------------------i~~~~~~~~ 177 (460)
+....+.- ..-+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 11111110 112567888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHH--H----------------------------------HHHHhCCChHHHHHHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAIL--A----------------------------------KHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l--~----------------------------------~~~~~~~~~~~a~~~~~ 221 (460)
++.|++++.-+....-+.-...-+.| + +.....|++++|...|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 88888888776643211111000100 0 01112577888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST 299 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 299 (460)
+....+-......|+ +.-.+...|++++|++.|-.+.. ..+....-.+...|-...+...|++++-+.... ++.|+
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 888765443333343 33345678888898888876654 445566667778888888889999988877664 45578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
.....|...|-+.|+-..|.+.+-+--+. ++-|..+...|...|....-+++++.+|++.. -+.|+..-|..++..
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmias 668 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHH
Confidence 88999999999999999998887666555 67789999999999999999999999999874 367999999988765
Q ss_pred -HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 380 -YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 380 -~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.+.|++++|.++|++..+. ++.|......|++.+...|-
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 46789999999999999876 68899999999999998886
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.1e-14 Score=142.28 Aligned_cols=408 Identities=8% Similarity=-0.049 Sum_probs=270.0
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCCh-hhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc---hhHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE-RDYASCLDLIAKLRGLQKAESYIQKIPESFRG---EVVYRT 98 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~ 98 (460)
.+.....-+....+.|+++.|++.|+.+.+.. |.+. ..+ .++..+...|+.++|+.++++... |+ ......
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHH
Confidence 44555555566778899999999999888765 2222 233 788888888999999999999874 43 223333
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSND 177 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (460)
+...+...|++++|+++|+++.+... -++..+..+...+...++ ++|.+.++.+... .|+...+..++..+...++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 35678888999999999999988753 346666677777788877 8888888888776 5666666555555545666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH------------------------------------
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLK------------------------------------ 221 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------ 221 (460)
..+|++.++++.+.. +.+...+..+..+..+.|-...|.++..
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 666999999998874 4456666666666666555444443332
Q ss_pred ------------HHHhC-CCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHhccCC---CHHHHHHHHHHHHccCCH
Q 012577 222 ------------EMEGD-NLKEHR-----WTCRLLLPLYAELGKADQVARIWKLCESNP---WLDVCMAAIEAWGKLNKV 280 (460)
Q Consensus 222 ------------~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 280 (460)
.+... +..|.. ....-.+-++...|+..++.+.++.+...+ ...+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 22221 111211 112234456677788888888888777533 233456777888888888
Q ss_pred HHHHHHHHHHHhcc-----cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHH
Q 012577 281 EEAEAVFKRMSKTW-----KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-----------HIGP---LAWDALV 341 (460)
Q Consensus 281 ~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~li 341 (460)
++|..+|+.+.... ..++......|.-+|...+++++|..+++.+.+... .||+ ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 88888888876543 122333456778888888888888888888876311 1221 2344456
Q ss_pred HHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-
Q 012577 342 KLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT- 420 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~- 420 (460)
..+...|++.+|++.++++....+ -|......+...+...|.+.+|++.++...... +-+..+......++...|+
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP--~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAP--ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhH
Confidence 667778888888888888866543 355667777788888888888888887666653 5556677777777777777
Q ss_pred -chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 421 -PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 421 -~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
.+..+.+...+ ..|+.....-|
T Consensus 501 ~~A~~~~~~l~~--~~Pe~~~~~~l 523 (822)
T PRK14574 501 HQMELLTDDVIS--RSPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHHh--hCCCchhHHHH
Confidence 45455544444 34555444443
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.1e-14 Score=124.63 Aligned_cols=363 Identities=12% Similarity=0.108 Sum_probs=172.8
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC--CCchhHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES--FRGEVVY 96 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 96 (460)
..|-+++++..+|..+++....+.|.+++++..... .+.+..++|.+|.+-.-..+ .++..+|... .||..|+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 334455555555555555555555555555444433 23445555555544332222 2222222211 2555555
Q ss_pred HHHHHHHHcCCCHHH----HHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHH----cCC----CCCH
Q 012577 97 RTLLANCVAGNNVKK----AEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEK----ENV----KLTQ 162 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~----~~~----~~~~ 162 (460)
|+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++ ..+..+..++.. ... +.|.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 555555555554432 23444455555555555555555555555444 222222222221 111 1123
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEG----IEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (460)
..|..-++.|.+..|.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 334444555555555555555544433210 1222 122334444445555555555555555554444555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh--cC
Q 012577 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD--HK 313 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g 313 (460)
..++++..-.|.++-..++|..+.. |...-+-+-.++++..+......|+...-..+-....+ ..
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~-------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKE-------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHH-------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 5555555555555555555544321 11111112222333333333333332211111111111 11
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHH---HHHHHHHhcCCHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM---LIMDQYAKRGDIHSTE 390 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~ 390 (460)
-.+....--.++... .......+.+...+.+.|+.++|++++..+.+...--|-....| -+++.-.+.++...|.
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111122223334443 34556777888888999999999999998855443333333444 5666777888899999
Q ss_pred HHHHHHHHcCC
Q 012577 391 KIFHRMRQVGY 401 (460)
Q Consensus 391 ~~~~~m~~~~~ 401 (460)
.+++-|...+.
T Consensus 582 ~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 582 EVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHcCc
Confidence 99998877663
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=2e-13 Score=136.30 Aligned_cols=232 Identities=12% Similarity=-0.013 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHH
Q 012577 196 DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAW 274 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~ 274 (460)
+...|..+..++.. +++++|+..+.+..... |+......+...+...|++++|...|+.+.. .|....+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 56777778777776 78888999888777654 5555444555666789999999999998765 34555667778888
Q ss_pred HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.+.|++++|...++...+..+. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999886532 3333444444555669999999999999985 467889999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhC
Q 012577 355 SILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRAD 432 (460)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 432 (460)
..+++.....+ .+...++.+..++...|++++|++.+++..+.. |-+...+..+..++...|+ .+...+++-.
T Consensus 630 ~~l~~AL~l~P--d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al-- 704 (987)
T PRK09782 630 SDLRAALELEP--NNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI-- 704 (987)
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 99999987653 345677888889999999999999999999875 6678899999999999999 4444454444
Q ss_pred CCCcCH
Q 012577 433 NVFPNK 438 (460)
Q Consensus 433 ~~~p~~ 438 (460)
.+.|+.
T Consensus 705 ~l~P~~ 710 (987)
T PRK09782 705 DDIDNQ 710 (987)
T ss_pred hcCCCC
Confidence 455665
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.4e-13 Score=134.61 Aligned_cols=366 Identities=9% Similarity=0.000 Sum_probs=265.2
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~ 104 (460)
.+..++..+...|+.++|+..++..... .+........+...+...|++++|.++|+++.+..| +...+..++..+.
T Consensus 70 av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~ 147 (822)
T PRK14574 70 QVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA 147 (822)
T ss_pred hHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence 3447778788889999999998887722 233333444446678888999999999999877755 4566677778888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH--
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM-- 181 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-- 181 (460)
..++.++|++.++++... .|+...+-.+...+...++ .+|.+.++++.+.. +-+...+..+..+..+.|-...|
T Consensus 148 ~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 148 DAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred hcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 889999999999988776 3555555333223322333 56888888888774 33455555555555444433333
Q ss_pred ----------------------------------------------HHHHHHHHhC-CCCCC-HHH----HHHHHHHHHh
Q 012577 182 ----------------------------------------------DQVVEAMKSE-GIEPD-SST----QAILAKHYVS 209 (460)
Q Consensus 182 ----------------------------------------------~~~~~~m~~~-g~~~~-~~~----~~~l~~~~~~ 209 (460)
+.-++.+... +-.|. ... ..-.+-++..
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 3333333321 11132 111 2234457788
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC--------CHHHHHHHHHHHHccCCHH
Q 012577 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP--------WLDVCMAAIEAWGKLNKVE 281 (460)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~ 281 (460)
.|++.++++.|+.+...+.+...++-..+.++|...+++++|..+++.+.... +......|.-+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 99999999999999988876566788899999999999999999999875421 2333577889999999999
Q ss_pred HHHHHHHHHHhccc-------------CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 282 EAEAVFKRMSKTWK-------------KLSTK-HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 282 ~a~~~~~~m~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
+|..+++.+.+..+ .||-. .+..++..+...|++.+|++.++.+.... |-|......+...+...
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999999987322 22322 34456778889999999999999998874 77999999999999999
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
|.+.+|.+.++.+.... +-+..+....+.++...|++.+|..+.+.+.+.
T Consensus 464 g~p~~A~~~~k~a~~l~--P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 464 DLPRKAEQELKAVESLA--PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred CCHHHHHHHHHHHhhhC--CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999997765543 234556677888889999999999999999875
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=5.1e-14 Score=132.36 Aligned_cols=414 Identities=14% Similarity=0.102 Sum_probs=223.5
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccC-CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch--hHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKL-DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE--VVYR 97 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 97 (460)
+-+|..+..+...+...|++..++++...+...... +.-.+.|--+.++|-..|+++.|..+|.+.....++. ..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 345666777777777777777777776665544311 1233456667777777777777777776655543433 2334
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-----KKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
-+...+.+.|+.+.+...|+...+.. +-+..+...|...|+..+. +.|..++......- +.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 45666777777777777777766652 3344555555555554421 34444443333332 33344444333333
Q ss_pred hhcCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC---CCCCCH------HHHHHHH
Q 012577 173 GQSNDLTGMDQVVEAMK----SEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD---NLKEHR------WTCRLLL 239 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~----~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~ 239 (460)
....-+ .++.+|.... ..+-++.....|.+...+...|++.+|...|...... ...+|. .+--.+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 322222 2233333222 2232344444555555555555555555554444332 111111 1111223
Q ss_pred HHHHhcCC----------------------------------hhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHH
Q 012577 240 PLYAELGK----------------------------------ADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 240 ~~~~~~~~----------------------------------~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 283 (460)
..+-..++ ..+|..+++.... +.++..++.+...+.+...+..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 33333334 4444444443322 22333333344445555555555
Q ss_pred HHHHHHHHhc-ccCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 012577 284 EAVFKRMSKT-WKKLSTKHYTALLKVYAD------------HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV 350 (460)
Q Consensus 284 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (460)
.+-|..+.+. ...+|+.+.-.|...|.+ .+..++|+++|...++.. +-|...-+-+.-.++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCc
Confidence 5544433322 122455555555554432 234677788888777763 55677777777788888888
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCCchhhhHHHH
Q 012577 351 EKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-VGYVARFKQFQTLVQAYINAKTPAYGIRDRM 429 (460)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m 429 (460)
.+|..+|.+..+... -...+|-.+.++|...|++-.|+++|+...+ ..-..+..+.+.|.+++.+.|..-.+.--..
T Consensus 663 ~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred hHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888888765432 2234777788888888888888888886654 3334567778888888888887433333334
Q ss_pred HhCCCCcCHHH
Q 012577 430 RADNVFPNKAL 440 (460)
Q Consensus 430 ~~~~~~p~~~~ 440 (460)
.+....|...+
T Consensus 741 ~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 741 KARHLAPSNTS 751 (1018)
T ss_pred HHHHhCCccch
Confidence 44445555544
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.3e-14 Score=130.96 Aligned_cols=400 Identities=12% Similarity=0.028 Sum_probs=276.6
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC----CchhHHHHHHHHHHcCCCHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF----RGEVVYRTLLANCVAGNNVKKA 112 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a 112 (460)
...+..++.++...-..+ +.++...+.+.+.|...|+++.+..+.+.+.... --...|-.+.++|-..|++++|
T Consensus 249 ~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred hHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 355667888887766655 4567789999999999999999999988876542 1245688999999999999999
Q ss_pred HHHHHHHHhCCCCCCh--hhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----ChhHHHHHH
Q 012577 113 EEVFNRMKDKGFPVTS--FACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN----DLTGMDQVV 185 (460)
Q Consensus 113 ~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 185 (460)
...|.+..+.. |+. ..+.-+...+...|+ ..+...|+...... +-+..+..+|...|...+ ..+.|..++
T Consensus 327 ~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 327 FKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 99998887763 444 344556678888898 89999999888773 445667777777777765 567788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC
Q 012577 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME----GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN 261 (460)
Q Consensus 186 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (460)
.+..+.- +-|...|-.+...+-....+ .++.+|..+. ..+..+.+...|.+...+...|+++.|...|+.....
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 7777654 56788888888777655444 4466665543 4455567789999999999999999999999865432
Q ss_pred ------CCH------HHHHHHHHHHHccCCHHHHHHHHHH----------------------------------HHhccc
Q 012577 262 ------PWL------DVCMAAIEAWGKLNKVEEAEAVFKR----------------------------------MSKTWK 295 (460)
Q Consensus 262 ------~~~------~~~~~li~~~~~~~~~~~a~~~~~~----------------------------------m~~~~~ 295 (460)
++. .+--.+...+-..++.+.|.+.|.. ....+-
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 222 1111222333333444444444444 443321
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc------------CCChhhHHHHHHHHHH
Q 012577 296 KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHIGPLAWDALVKLHVE------------GGEVEKADSILLKAQQ 362 (460)
Q Consensus 296 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~ 362 (460)
.++..++.+...+.....+..|.+-|......- ..+|..+.-+|...|.. .+..++|+++|.++++
T Consensus 562 -~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 562 -SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred -CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 244455555556666666666666555444321 12466666666665542 2346778888888776
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhH-HHHHhCCCCcCHH
Q 012577 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIR-DRMRADNVFPNKA 439 (460)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~-~~m~~~~~~p~~~ 439 (460)
.+ +-|...-|.+.-.++..|++.+|..+|.+.++.. .....+|-.+..+|...|. .|..+| .-|+...-.-+..
T Consensus 641 ~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 641 ND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred cC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 54 3466667888889999999999999999999976 3456689999999999999 455555 5566667666777
Q ss_pred HHHHHHHH
Q 012577 440 LAAQVAQV 447 (460)
Q Consensus 440 ~~~~l~~~ 447 (460)
....|.++
T Consensus 718 vl~~Lara 725 (1018)
T KOG2002|consen 718 VLHYLARA 725 (1018)
T ss_pred HHHHHHHH
Confidence 77777433
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=8.1e-13 Score=131.94 Aligned_cols=350 Identities=11% Similarity=0.003 Sum_probs=240.2
Q ss_pred ccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC----chhHHHHHHHHHHcCCC---HH
Q 012577 38 RMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR----GEVVYRTLLANCVAGNN---VK 110 (460)
Q Consensus 38 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~---~~ 110 (460)
+...++...++.+-+.. +-+....-.+.-...+.|+.++|.++|+..-...+ +....+-++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 45555555555555542 23444444455555667777777777777544211 22334455555555544 22
Q ss_pred HHHHH----------------------HHHHHhC-CC-CC--ChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHH
Q 012577 111 KAEEV----------------------FNRMKDK-GF-PV--TSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 111 ~a~~~----------------------~~~m~~~-g~-~~--~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (460)
++..+ ++..... +. ++ +...|..+..++...+..+|...+...... .|+...
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHH
Confidence 22222 2222211 11 33 566677777777664337788877777665 466554
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
...+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.+.. +...+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHh
Confidence 444455557899999999999987654 455566777778888999999999999998876522 33333344445556
Q ss_pred cCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 245 LGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
.|++++|...++.... .|+...+..+...+.+.|++++|...++......+. +...++.+...+...|++++|...++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6999999999987765 677778888999999999999999999999887554 66788888889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
...+.. +-+...+..+..++...|++++|...++++.+.. |+. .+.........+..+++.|.+-+++....
T Consensus 668 ~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~---P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 668 RAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI---DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 998863 5577888899999999999999999999987654 432 34445555666677777777777776654
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=8.1e-13 Score=121.24 Aligned_cols=280 Identities=13% Similarity=0.107 Sum_probs=209.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHH-HHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhhcCChhHH
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQL-LILYKRLDK-KKVADVLLLMEKENVKLTQFSYK--ILIDIKGQSNDLTGM 181 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a 181 (460)
.|++++|.+.+....+.. +.+..+..+ ..+..+.|+ +.+.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688988888777765542 122222222 223355565 8888888888764 55554333 336788899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR-------WTCRLLLPLYAELGKADQVARI 254 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 254 (460)
.+.++++.+.. +-+......+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 556788889999999999999999999999987665322 2333444444455566777777
Q ss_pred HHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012577 255 WKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI 332 (460)
Q Consensus 255 ~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 332 (460)
|+.+.. ..+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+. .+-
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~ 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGD 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCC
Confidence 777643 346667888899999999999999999988874 344422 2344445668999999999998876 356
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
|+..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778889999999999999999999998764 58888888999999999999999999998764
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=4e-12 Score=119.02 Aligned_cols=362 Identities=12% Similarity=0.070 Sum_probs=272.4
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC-CchhHHHHHHHHHHcCCCH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF-RGEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~ 109 (460)
...+.-+|++++|.+++.++.+.. |.....|..|...|-..|+.+++...+-...... .|...|-.+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 333555699999999999999886 6678899999999999999999999888766653 4678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhhcCChhHHHHH
Q 012577 110 KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQF----SYKILIDIKGQSNDLTGMDQV 184 (460)
Q Consensus 110 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~ 184 (460)
++|.-+|.+.++.. +++....---...|.+.|+ ..|.+-|.++....-+.|.. .--..++.+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999985 4455555556678888999 89999999988874222222 223346677788888999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---------------------------CHHHHH
Q 012577 185 VEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE---------------------------HRWTCR 236 (460)
Q Consensus 185 ~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~ 236 (460)
++..... +-..+...+++++..+.+..+++.|......+......+ +..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 9887763 224566778899999999999999999888877622222 2222 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc-----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 237 LLLPLYAELGKADQVARIWKLCES-----NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
.++-++.+.+..+....+...+.. ..++..|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 233344444444444444433322 124557888999999999999999999999987665577889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH-------hCCCCcCHHHHHHHHHHHHhcC
Q 012577 312 HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ-------QNKFKPMFSSYMLIMDQYAKRG 384 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g 384 (460)
.|.+++|.+.|+..+... +.+...-.+|...+.+.|+.++|.++++.+.. .....|+...-......+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999998863 45666777788889999999999999988542 2234455555556667788888
Q ss_pred CHHHHHHHHHHHH
Q 012577 385 DIHSTEKIFHRMR 397 (460)
Q Consensus 385 ~~~~a~~~~~~m~ 397 (460)
+.++=+.+-..|.
T Consensus 541 k~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 541 KREEFINTASTLV 553 (895)
T ss_pred hHHHHHHHHHHHH
Confidence 8887666655554
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.2e-12 Score=120.05 Aligned_cols=281 Identities=9% Similarity=0.002 Sum_probs=215.1
Q ss_pred hhCHHHHHHHHHhcccCCCchhHHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhH--HHHHHHHhcCc-hHHHH
Q 012577 73 LRGLQKAESYIQKIPESFRGEVVYRTL-LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACN--QLLILYKRLDK-KKVAD 148 (460)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~-~~a~~ 148 (460)
.|+++.|++.+...+...+++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+ +.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 599999999998876643334443333 34457899999999999999875 45554333 23456777777 99999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCChHHHHHHHH
Q 012577 149 VLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS-------STQAILAKHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 221 (460)
.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 557788889999999999999999999999988644322 233344444445555666777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
.+.+. .+.++.....+...+...|+.++|..+++..... ++.. ..++.+....++.+++.+..+...+..+. |..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~ 329 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPL 329 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-CHH
Confidence 66443 2346778888999999999999999999876653 3442 22344445669999999999999987554 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7889999999999999999999999985 69999999999999999999999999988754
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=2.7e-15 Score=131.53 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-LKEHRWTCRLLLPLYA 243 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 243 (460)
+..++.. ...+++++|.++++...+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3334433 3455555555555444332 2334444444455555555555555555544321 1233344444444444
Q ss_pred hcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 244 ELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
+.|+.++|...++.... .| +....+.++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|...
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccc
Confidence 45555555444444333 33 23344445555555555555555555444432 22344455555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
++...+.. +.|+.+...+..++...|+.++|.++..++
T Consensus 237 ~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 237 LEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccccc-cccccccccccccccccccccccccccccc
Confidence 55555542 335555555555555555555555555444
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.2e-12 Score=120.90 Aligned_cols=288 Identities=13% Similarity=0.065 Sum_probs=193.6
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhhH-HHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCChh
Q 012577 104 VAGNNVKKAEEVFNRMKDKGFPVTSFACN-QLLILYKRLDK-KKVADVLLLMEKENVKLTQ--FSYKILIDIKGQSNDLT 179 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~ 179 (460)
...|+++.|.+.+.+..+. .|++..+- ....++...|+ +.+.+.+....+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 3467788888777776654 23333222 22334555566 7777777776654 2333 23333577788889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---Hh----cCChhHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY---AE----LGKADQVA 252 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~a~ 252 (460)
.|.+.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ .. ....+...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999988875 4567778888888999999999999999888876543222211111111 22 22233344
Q ss_pred HHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 253 RIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH-YTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 253 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
..++.... ..+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 44444322 13667788888999999999999999999988644322111 122222334457788888888888775
Q ss_pred CCCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 330 CHIGP--LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 330 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+-|+ ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.++|++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455 67778999999999999999999953222 2458888888999999999999999999998754
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=2.2e-10 Score=103.94 Aligned_cols=404 Identities=9% Similarity=0.027 Sum_probs=251.5
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCC-CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-
Q 012577 14 KYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLD-FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR- 91 (460)
Q Consensus 14 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 91 (460)
.+...|...+.+....-...+-..|..--+..+...+..-+--. ....++..-...|.+.+.++-|+.+|......+|
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~ 548 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC 548 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc
Confidence 33344555666655555555555555555555555444433111 1234556666666666677777777666555544
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
+...|......--..|..++...+|++.... ++-....|-....-+...|+ ..|..++....+.. +-+...|-.-+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445655555555566677777777776665 22233334344445555566 66666666666553 335556666666
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.-..+..++.|..+|.+.... .|+...|.--++.-.-.++.++|.+++++.++.-. --...|..+...+.+.++.+.
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHH
Confidence 677777777777777766654 45555555555555556667777777776665421 122345556666666777777
Q ss_pred HHHHHHH-hccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 251 VARIWKL-CESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 251 a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|...|.. .+.-| .+..|..+...--+.|.+-.|..+++..+-.++. +...|-..|..-.+.|+.+.|..++.+..+.
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7666553 22333 3445666666666667777777777777766554 6667777777777777777777777776665
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
++.+...|..-|....+.++-......+.+. .-|....-.+...+....+++.|.+.|.+..+.+ +.+-.+|
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 5666667777777666666655554444332 2344555667777888889999999999999886 6667899
Q ss_pred HHHHHHHHhcCC--chhhhHHHHHh
Q 012577 409 QTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 409 ~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
.-+..-+..+|. ....++.....
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999996 44555555544
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.1e-11 Score=105.80 Aligned_cols=289 Identities=13% Similarity=0.074 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHH
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (460)
.|+|.+|+++..+-.+.+-.| ...|..-..+.-+.|+ +.+-.++.+..+..-.++...+-+........||++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999988877776433 2333344445556666 78888888887763366777777888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR-------WTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 185 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++++.+.+ +-+.........+|.+.|++.....++..+.+.+.--++ .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998876 567888899999999999999999999999998876543 4566666666666666666667776
Q ss_pred hcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 012577 258 CES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPL 335 (460)
Q Consensus 258 ~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 335 (460)
... ..++..-.+++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-.+..+.-.+. .+-++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 544 33455566777888888888999888888888776555 22223455667777777777666554 345667
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR 404 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 404 (460)
.+..|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+..+|.+..++....-.+|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 888888888888889898888887654 468888888888888888988888888887765433443
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.7e-11 Score=102.53 Aligned_cols=368 Identities=12% Similarity=0.071 Sum_probs=246.1
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHH--HH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQ--LL 135 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--ll 135 (460)
|...+-.....+-+.|....|...|.......| .-..|-.|..... +.+.+. .... |.+.|...+.. +.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~~----~l~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEILS----ILVV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHHH----HHHh-cCcccchHHHHHHHH
Confidence 444444444556677888888888888765423 3344444443322 222222 2221 22222222222 22
Q ss_pred HHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCC
Q 012577 136 ILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGI--EPDSSTQAILAKHYVSGGR 212 (460)
Q Consensus 136 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~~~ 212 (460)
.++..... +++.+-.+.....|.+-+...-+....+.....|+++|+.+|+++.+... --|..+|+.++- .+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 24444444 67777777778888766666555556667778899999999999987731 125677777763 33332
Q ss_pred hHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 213 KEKAEAMLKEME--GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 213 ~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
-. +.++.+-. -....| .|...+.+-|+-.++.++|...|++..+ +| ....|+.+.+-|....+...|.+.++
T Consensus 313 sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21 22222211 122333 5777888889999999999999998766 55 45578888899999999999999999
Q ss_pred HHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc
Q 012577 289 RMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP 368 (460)
Q Consensus 289 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 368 (460)
..++-++. |-..|-.|.++|.-.+.+.-|+-+|++..+.. +.|+..|..|..+|.+.++.++|++.|.....-.. .
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--t 464 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--T 464 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--c
Confidence 99987655 88899999999999999999999999998863 56889999999999999999999999998876543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCc-cHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCHHHHH
Q 012577 369 MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ----VG-YVA-RFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAA 442 (460)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~-~~~-~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~ 442 (460)
+...+..|.+.|-+.++.++|...|++-.+ .| +.| .....-.|..-+.+.++...+-...+......+...--+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak 544 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAK 544 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHH
Confidence 456888999999999999999998887665 23 233 222333355566677775554444444443366655555
Q ss_pred HH
Q 012577 443 QV 444 (460)
Q Consensus 443 ~l 444 (460)
.|
T Consensus 545 ~L 546 (559)
T KOG1155|consen 545 AL 546 (559)
T ss_pred HH
Confidence 55
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.5e-13 Score=122.98 Aligned_cols=279 Identities=11% Similarity=0.010 Sum_probs=146.3
Q ss_pred CHHHHHHHHHhcccCCCch-hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCChhhhHHHHHHHHhcCchHHHHHH-
Q 012577 75 GLQKAESYIQKIPESFRGE-VVYRTLLANCVAGNNVKKAEEVFNRMKDKGF--PVTSFACNQLLILYKRLDKKKVADVL- 150 (460)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~a~~~~- 150 (460)
+..+|...|++++...++. .+...+..+|...+++++|.++|+...+... .-+...|.+.+-.+. ++.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHHH
Confidence 4567888888877665544 4445567788888888888888888776521 113445555443222 22222222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 012577 151 LLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE 230 (460)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (460)
+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.. +-...+|+.+.+-+.....+|+|...|+..+.-...
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 2222221 4455677777777777777777777777776653 225667777776677777777777777666543211
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH
Q 012577 231 HRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV 308 (460)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 308 (460)
+-..|-.+...|.+.++++.|+-.|+.... +| +.+....+...+-+.|+.++|++++++....+.. |+..--..+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 112233344445555555555555444333 23 2333334444444445555555555544443333 33333333444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+...+++++|+..++++++. ++-+...|..+...|-+.|+.+.|..-|.-+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 44444555555555554443 22233444444444545555555544444443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.1e-13 Score=120.57 Aligned_cols=286 Identities=10% Similarity=0.030 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (460)
.+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+-.+-+ +-++.++.
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 6788888885554 23344666778899999999999999999998762 12357788888754432 22333333
Q ss_pred -HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC
Q 012577 222 -EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298 (460)
Q Consensus 222 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 298 (460)
++.+.. +-.+.+|.++..+|.-.++.+.|++.|++..+ +| ...+|+.+..-+.....+|.|...|+..+...++ +
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 333332 33568999999999999999999999998776 55 7789999999999999999999999998875333 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (460)
-..|..+...|.+.++++.|.-.|+.+.+-+ +-+......+...+.+.|+.++|+++++++...++..| ..--..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--LCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--hhHHHHHH
Confidence 4455567788999999999999999999864 45677788888889999999999999999987665444 23233455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKAL 440 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 440 (460)
.+...+++++|...++++++. ++-+..+|-.+.+.|.+.|...+++...-.+..+.|...-
T Consensus 566 il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 677889999999999999987 4667888999999999999988888877777777776543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8e-11 Score=102.44 Aligned_cols=315 Identities=13% Similarity=0.066 Sum_probs=211.7
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHH--HHH
Q 012577 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSY--KIL 168 (460)
Q Consensus 91 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 168 (460)
.|...+-.....+.+.|..+.|.+.|...... -+..|.+.+....-..+.+ +...+.. |.+.|.... -.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e---~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE---ILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH---HHHHHHh-cCcccchHHHHHHH
Confidence 34444444444566778888888888877654 2334444443332222211 1222221 112222111 123
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK--EHRWTCRLLLPLYAELG 246 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 246 (460)
..++-...+.+++.+-.+.....|++.+...-+....+.....++|+|+.+|+++.++++- -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 4566666688888888888888887666555555555666778889999999988877432 24566666654332222
Q ss_pred Chh-HHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 247 KAD-QVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 247 ~~~-~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
++. .|..+++ + .+--+.|+..+.+-|+-.++.++|...|++.++.++. ....|+.+..-|....+...|.+-++.+
T Consensus 314 kLs~LA~~v~~-i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVSN-I-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHH-h-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 211 1111111 1 1234456777777888888888999999988887654 5677888888888888889999999988
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 012577 326 AESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF 405 (460)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 405 (460)
++-. +-|-..|-.|.++|.-.+.+.-|+-+|+++.+-. +-|...|.+|..+|.+.++.++|++.|++....| ..+.
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 8863 6688888889999998888888999888886533 3467888999999999999999999999888877 5566
Q ss_pred HHHHHHHHHHHhcCC
Q 012577 406 KQFQTLVQAYINAKT 420 (460)
Q Consensus 406 ~~~~~l~~~~~~~g~ 420 (460)
..+..|.+.|-+.++
T Consensus 467 ~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 467 SALVRLAKLYEELKD 481 (559)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888888887
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=7.8e-15 Score=128.63 Aligned_cols=248 Identities=15% Similarity=0.118 Sum_probs=95.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEG-IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL 245 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (460)
.+...+.+.|++++|.+++++..... .+.|...|..+...+...++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777777888877775544332 1334455555666666677777787777777765543 44455566655 577
Q ss_pred CChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc-cCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 246 GKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW-KKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 246 ~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
+++++|.++++..-. .++...+...+..+.+.++++++.++++.+.... ..++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777654332 4455556666777777778888777777765432 23466667777777778888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
+..+.. |.|......++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++|..+|++..+.. +.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 877763 3356777777777777788877777777765543 2333466777777888888888888888877764 56
Q ss_pred cHHHHHHHHHHHHhcCC
Q 012577 404 RFKQFQTLVQAYINAKT 420 (460)
Q Consensus 404 ~~~~~~~l~~~~~~~g~ 420 (460)
|+.+...+..++...|+
T Consensus 247 d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGR 263 (280)
T ss_dssp -HHHHHHHHHHHT----
T ss_pred ccccccccccccccccc
Confidence 77777777777777777
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=7.5e-12 Score=115.56 Aligned_cols=283 Identities=11% Similarity=0.012 Sum_probs=116.7
Q ss_pred hhCHHHHHHHHHhcccCCCchhH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh--hhHHHHHHHHhcCc-hHHHH
Q 012577 73 LRGLQKAESYIQKIPESFRGEVV-YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSF--ACNQLLILYKRLDK-KKVAD 148 (460)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~-~~a~~ 148 (460)
.|+++.|.+.+.+..+..|+... +-....+..+.|+++.|.+.+.+..+.. |+.. ..-.....+...|+ +.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544443333222 2222334444555555555555544332 2221 11112333344444 55555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhCCChHHHHHHHHHHH
Q 012577 149 VLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQA-ILAKHY---VSGGRKEKAEAMLKEME 224 (460)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~ 224 (460)
.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555443 233444445555555555555555555555544422 222221 111111 21122222222333333
Q ss_pred hCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhcccCc
Q 012577 225 GDNLK---EHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDV---CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297 (460)
Q Consensus 225 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 297 (460)
+.... .+...+..+...+...|+.++|.+.++...+ .|+... ...........++.+.+.+.++...+..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 22111 1344444455555555555555555544433 333221 011111112234444455555444443221
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 298 ST--KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 298 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 3334445555555555555555553222223445544555555555555555555555543
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=2.7e-11 Score=113.64 Aligned_cols=351 Identities=12% Similarity=0.057 Sum_probs=262.7
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK- 143 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~- 143 (460)
..+.+...|++++|.+++.++.+. +.....|.+|...|-+.|+.+++...+-..-..+ +-|...|..+-....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344445569999999999998776 4467899999999999999999998876655543 4477888888888899998
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhCCChHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQ----AILAKHYVSGGRKEKAEAM 219 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 219 (460)
..|.-.|.+..+.. +++...+---+..|-+.|+...|+..|.++.....+.|..-. -..++.+...++.+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999885 566666666788899999999999999999987422232222 3345667778888999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc---C----------------------CCHHHH----HH
Q 012577 220 LKEMEGD-NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES---N----------------------PWLDVC----MA 269 (460)
Q Consensus 220 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~----------------------~~~~~~----~~ 269 (460)
++..... +-..+...++.++..+.+...++.+......... . |+..+| .-
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 9887762 2223445778888999999999988776644322 0 111111 12
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcc--cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTW--KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
++-++.+.+..+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+.....--+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 3334445555555555555555554 33355678889999999999999999999999876556788999999999999
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCccHHHHHHHHHHHHhcC
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR--------QVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~~g 419 (460)
|..++|.+.|+.++...+...| .--+|...+.+.|+.++|.+++..+. ..+..|+....-...+.+.+.|
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999886654444 44567778899999999999999854 3446677777777777888888
Q ss_pred C
Q 012577 420 T 420 (460)
Q Consensus 420 ~ 420 (460)
+
T Consensus 541 k 541 (895)
T KOG2076|consen 541 K 541 (895)
T ss_pred h
Confidence 7
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=9.1e-12 Score=103.28 Aligned_cols=218 Identities=19% Similarity=0.157 Sum_probs=130.5
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc------hhHHHHHHHHHHcCCCHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG------EVVYRTLLANCVAGNNVK 110 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~ 110 (460)
..+.++|+++|-+|.+.. +-+.++.-++.+.|.+.|..+.|+++.+.+..+ || ......|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 456788888888887754 445566777888888888888888888887664 33 233455667788888888
Q ss_pred HHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCChhHHHHHH
Q 012577 111 KAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ----FSYKILIDIKGQSNDLTGMDQVV 185 (460)
Q Consensus 111 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 185 (460)
.|.++|..+.+.|. --......|+..|-...+ ++|.++-.++.+.+-.+.. ..|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888877542 133445555555655555 5566555555554322221 23444555555555666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 186 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
.+..+.+ +..+..--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+.++.
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6555443 223333334445555566666666666666555544334445555555555555555555554433
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.5e-11 Score=104.12 Aligned_cols=388 Identities=11% Similarity=-0.007 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCC-hhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHH
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFI-ERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCV 104 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~ 104 (460)
+...-..+.+.|.+++|++.|.+..... |+ +--|+....+|...|+|+++.+--.+..+..|+ +..+.--..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 3444455778899999999999998753 55 666888999999999999988877776665454 344555555666
Q ss_pred cCCCHHHHHHHHHHHHh-CCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhh-------
Q 012577 105 AGNNVKKAEEVFNRMKD-KGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKE--NVKLTQFSYKILIDIKGQ------- 174 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~------- 174 (460)
..|++++|+.=..-..- .|+. +..+--.+=+.+-+.+..++.+-+. .. .+-|+....++....+..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAMKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHHHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 66666665432111100 0000 0000000000111111111111111 00 111221111111111100
Q ss_pred ------------------cC---ChhHHHHHHHHHHhC-CCCC--C---------HHHHHHHHHHHHhCCChHHHHHHHH
Q 012577 175 ------------------SN---DLTGMDQVVEAMKSE-GIEP--D---------SSTQAILAKHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 175 ------------------~~---~~~~a~~~~~~m~~~-g~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (460)
.+ .+..|...+.+-... -..+ + ..+...-...+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 00 111222222111100 0001 1 1111111122333455555666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST 299 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 299 (460)
..+.....++. .|--+..+|....+.++....|..... + .+..+|..-...+.-.+++++|..=|++.....+. +.
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 55555444332 244455555556666665555555443 2 24444544455555555566666666655554332 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC------CcCHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF------KPMFSSY 373 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 373 (460)
..|..+..+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++..+. .+.....
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 44555555555555666666666665554 4445556666666666666666666666655543211 1111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhH
Q 012577 374 MLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIR 426 (460)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~ 426 (460)
..++.. ...+++..|..++.+..+.+ +-....|.+|...-.+.|+ ++..+|
T Consensus 508 Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 508 KALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred hhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111111 12355666666666666554 3344555555555555555 344444
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.9e-11 Score=101.46 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCChhHH
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLT---QFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 181 (460)
+.+.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|. +.|..+.+.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356777777777777642 2233444455566666666 777777766665311111 12233455566667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR----WTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+.+|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777766644 344556666666777777777777776666665544332 1233333333334444444444443
Q ss_pred hcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 258 CES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 258 ~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
..+ +|. +..-..+.+.+...|+++.|.+.++...+.++.--+.+...|..+|...|+.++...++..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 322 221 1122233344444444444444444444443332333344444444444444444444444444
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.3e-11 Score=106.97 Aligned_cols=207 Identities=11% Similarity=0.070 Sum_probs=162.3
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
....|++++|.+.|++.....-.-....||+ .-.+-..|+.++|+..|-++... +.-+..+...+.+.|....+..+|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 4457999999999999985432112222332 23466789999999999877543 223566777889999999999999
Q ss_pred HHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 252 ARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 252 ~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
.+++....+ ..++....-|...|-+.|+-..|.+.+-+--.. ++.+..+...|...|....-+++++.+|+..--
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 999988766 447778899999999999999999887655443 455888888899999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHH-cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 330 CHIGPLAWDALVKLHV-EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 330 ~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+.|+..-|..++..|. +.|++.+|.+++.....+ ++-|......|++.+...|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc
Confidence 6899999999888775 579999999999998765 45677788888888777663
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.9e-10 Score=97.94 Aligned_cols=366 Identities=11% Similarity=0.103 Sum_probs=263.6
Q ss_pred hcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 012577 36 TRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEV 115 (460)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 115 (460)
.-|+...|.++|+.-.. +.|+...+.+.|+.=.+.+.++.|..+++...-.+|++.+|-.....=.+.|....|..+
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34677778888854433 567888888888888888888888888888766668888888888777888888888888
Q ss_pred HHHHHhCCCCCChhhhHHHHHHHHhc----Cc-hHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChhHHHHH----
Q 012577 116 FNRMKDKGFPVTSFACNQLLILYKRL----DK-KKVADVLLLMEKENVKLT--QFSYKILIDIKGQSNDLTGMDQV---- 184 (460)
Q Consensus 116 ~~~m~~~g~~~~~~~~~~ll~~~~~~----~~-~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~---- 184 (460)
|+...+. -.|...-..++.+++.. .. +.|.-+|+-..+. ++.+ ...|......--+.||.......
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 8877653 11333333344444332 22 6677777776665 2333 44555555555556665444333
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---HhcCChhH
Q 012577 185 ----VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR-------WTCRLLLPLY---AELGKADQ 250 (460)
Q Consensus 185 ----~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~ 250 (460)
|+.+...+ +.|-.+|--.++.--..|+.+...++|+..+.. ++|-. +.|--+=-++ ....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34455444 667888888888888899999999999999876 44421 2222111122 34788999
Q ss_pred HHHHHHHhcc--CCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 251 VARIWKLCES--NPWLDVCMAAIEA----WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 251 a~~~~~~~~~--~~~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+.++++.+.. +....|+.-+--. -.++.++..|.+++..... ..|-..+|...|..-.+.+.++.+..+++.
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999988766 3344455544433 3467889999999987764 567889999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 012577 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR 404 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 404 (460)
.++.+ +-|..+|......-...|+.+.|..+|+.++.+..+......|.+.|..-...|.++.|..+++++++. .+.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 99975 557889999888888999999999999998877655555677888888888999999999999999975 344
Q ss_pred HHHHHHHHHH
Q 012577 405 FKQFQTLVQA 414 (460)
Q Consensus 405 ~~~~~~l~~~ 414 (460)
..+|-++..-
T Consensus 540 ~kvWisFA~f 549 (677)
T KOG1915|consen 540 VKVWISFAKF 549 (677)
T ss_pred chHHHhHHHH
Confidence 5566665543
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.7e-10 Score=99.23 Aligned_cols=416 Identities=11% Similarity=0.004 Sum_probs=297.6
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-------CC
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-------FR 91 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 91 (460)
+...+|.....+.+.+.-.+.++.|..+...-.- ...+.........++.+.++++.|..++...+.. ..
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 5557888999999999999999998887754322 2346667777888899999999999999833110 00
Q ss_pred ch-------hHH-----H-----HH--HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH---HHHHHhcC-------
Q 012577 92 GE-------VVY-----R-----TL--LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL---LILYKRLD------- 142 (460)
Q Consensus 92 ~~-------~~~-----~-----~l--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l---l~~~~~~~------- 142 (460)
+. ..+ + ++ ...|....++++|...|.+.... |...|..+ +.+..-..
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELL 196 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHH
Confidence 10 001 0 01 12345556677787777776654 33333222 21111110
Q ss_pred ----------c--hHHHHHHHHH----------------HHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC
Q 012577 143 ----------K--KKVADVLLLM----------------EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE 194 (460)
Q Consensus 143 ----------~--~~a~~~~~~~----------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (460)
. +....+|+.- .-.+..-+........+-+...+++.+..++++...+.. +
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-p 275 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-P 275 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C
Confidence 0 1111122210 001223344455556667788999999999999998775 6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIE 272 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~ 272 (460)
+....+..-|.++...|+..+-..+=.++.+..+ -.+.+|-++.--|...|+..+|.+.|.+... +.-...|-.+..
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 7777888888899999999888888888887643 3668899999889999999999999987655 334558999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (460)
.|.-.|.-++|...+....+.-.. ....+--+.--|.+.++++.|.++|.+...- .|.|+...+-+.......+.+.+
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHH
Confidence 999999999999998877664211 2233444566788899999999999999876 46688888888888888899999
Q ss_pred HHHHHHHHHHhCC-C---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHH
Q 012577 353 ADSILLKAQQQNK-F---KP-MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRD 427 (460)
Q Consensus 353 a~~~~~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 427 (460)
|..+|+.....-. + .+ -..+++.|..+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+...++-.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 9999998763110 0 11 22467889999999999999999999999875 77899999999999999996666666
Q ss_pred HHHhCCCCcCHHHHHHHHH
Q 012577 428 RMRADNVFPNKALAAQVAQ 446 (460)
Q Consensus 428 ~m~~~~~~p~~~~~~~l~~ 446 (460)
-=++..+.|+..+...++.
T Consensus 512 fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHhcCCccHHHHHHHH
Confidence 6677789999987777743
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=2.6e-09 Score=93.50 Aligned_cols=382 Identities=9% Similarity=0.028 Sum_probs=229.5
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch-hHHHHHHHHHHcCCCHHHHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE-VVYRTLLANCVAGNNVKKAEEV 115 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 115 (460)
++++..|..+|+...... ..+...+...+.+=.+++.++.|..+|+......|-+ ..|-..+..=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 445556778888777654 2244456666777778899999999999877665544 4466666566667999999999
Q ss_pred HHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CC
Q 012577 116 FNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GI 193 (460)
Q Consensus 116 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~ 193 (460)
|++..+. .|+...|++.|..=.+.+. +.|..+++...-. .|++.+|--....-.+.|+...|.++|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998875 7999999999998777777 8999999988764 699999988888888999999999999888764 20
Q ss_pred -CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHH---------HHhccCC
Q 012577 194 -EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH-RWTCRLLLPLYAELGKADQVARIW---------KLCESNP 262 (460)
Q Consensus 194 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~ 262 (460)
..+...+.+....=.+...++.|.-+|+-.++.-++.. ...|......=-+.|+.....+.. +.+..+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 11223333333333455667777777776665422211 233444443333445544433322 1122233
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH--HHHHH--------HHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 263 -WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK--HYTAL--------LKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 263 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l--------i~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
+-.+|--.+..-...|+.+...++|+..... ++|-.. .|.-. +-.-....+.+.+.++++..++. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 4445555555555566666666666666654 333111 11111 11112345566666666666553 33
Q ss_pred CCHHHHHHHHHHHH----cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 012577 332 IGPLAWDALVKLHV----EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQ 407 (460)
Q Consensus 332 ~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 407 (460)
....||..+=-.|+ ++.++..|.+++..++ |.-|-..+|...|..-.+.++++.+..++++.++.+ |.|..+
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~ 473 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA 473 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence 34444444333332 4556666666665554 333555566666666666666666666666666554 445555
Q ss_pred HHHHHHHHHhcCC--chhhhHHHHH
Q 012577 408 FQTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 408 ~~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
|......-...|+ .+.+++..-.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5555554444554 3445554433
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=6.9e-09 Score=94.48 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=24.8
Q ss_pred HHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHH
Q 012577 68 DLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNR 118 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 118 (460)
-+|++...++.|.+++.+..+. ..+...|.+-...=-.+|+.+...++.++
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3444455555555555555444 22344454444444445555555555443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=5.6e-09 Score=94.83 Aligned_cols=373 Identities=11% Similarity=0.051 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANC 103 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~ 103 (460)
|......+..+.++|+.......|+.....-+..-....|...+......+-++.+.++++...+. ++..-+..|..+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEYL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 345555666677788888888888887776544455667888888888888899999999987763 344467778888
Q ss_pred HcCCCHHHHHHHHHHHHhCC------CCCChhhhHHHHHHHHhcCc----hHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 012577 104 VAGNNVKKAEEVFNRMKDKG------FPVTSFACNQLLILYKRLDK----KKVADVLLLMEKENVKLTQ--FSYKILIDI 171 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~~~~~~--~~~~~li~~ 171 (460)
++.+++++|.+.+...+... -+.+...|..+....++..+ -....+++.+... -+|. ..|++|.+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 89999999999888776431 24455667777776666554 3334455544433 3443 468899999
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------------------------------------------
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS------------------------------------------ 209 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~------------------------------------------ 209 (460)
|.+.|.+++|..+|++....- .+..-|..+.++|++
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999988865541 122112222222211
Q ss_pred ------------------------CCChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 210 ------------------------GGRKEKAEAMLKEMEGDNLKE------HRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 210 ------------------------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
.|+..+-...|.++.+. +.| -...|..+.+.|...|+++.|..+|+...
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 23344455555555432 111 12456677788888888888888888766
Q ss_pred cCC--CH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-----------------cCHHHHHHHHHHHHhcCCHH
Q 012577 260 SNP--WL----DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-----------------LSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 260 ~~~--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------------p~~~~~~~li~~~~~~g~~~ 316 (460)
..| .+ .+|..-...=.+..+++.|+++.+........ -+...|...++..-..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 533 22 24555555556667778888877766542111 12345666666666777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR---GDIHSTEKIF 393 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~ 393 (460)
....+++.+.+..+. ++.+.......+-...-++++.+++++-+..+..+.-...|+..+..+.+. ...+.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888888888775432 232222222333344556666666666555443322234555555444331 2577777777
Q ss_pred HHHHHcCCCccH
Q 012577 394 HRMRQVGYVARF 405 (460)
Q Consensus 394 ~~m~~~~~~~~~ 405 (460)
++..+ |++|..
T Consensus 574 EqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 574 EQALD-GCPPEH 584 (835)
T ss_pred HHHHh-cCCHHH
Confidence 77777 555543
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=2.1e-09 Score=92.24 Aligned_cols=284 Identities=10% Similarity=0.026 Sum_probs=225.4
Q ss_pred Cc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012577 142 DK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 142 ~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
|+ ..|.+...+-.+.+ +.....|..-..+.-..||.+.+-.++.+..+.--.++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44 78888888877776 33455666777888899999999999999987632566777778888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC---C-------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP---W-------LDVCMAAIEAWGKLNKVEEAEAVFKRM 290 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 290 (460)
.++.+.+.. ++.......++|.+.|++..+..+...+.+.. + ..+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 999887765 55788899999999999999999999887622 1 236777887777777777766677766
Q ss_pred HhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH
Q 012577 291 SKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF 370 (460)
Q Consensus 291 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (460)
... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|+ -...-.+.+.++.+.-++..++-.+..+..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 554 344677788899999999999999999999999887776 2223346678898888888888888777767
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCc
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFP 436 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p 436 (460)
..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+.+++.+.|+ .+.....+-...-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 5889999999999999999999997776 47999999999999999999 4555554443333333
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=2.7e-10 Score=109.41 Aligned_cols=248 Identities=12% Similarity=0.031 Sum_probs=149.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV---------SGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (460)
+++++|.++|++..+.. +.+...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 34567788888777663 233455555554443 223467788888887776543 5566777777777788
Q ss_pred ChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 247 KADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 247 ~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
++++|...+++... .| +...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888877554 44 3456677777778888888888888887775443 222333344455667788888888887
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC
Q 012577 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV-GYV 402 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~ 402 (460)
+.+..-+-++..+..+..++...|+.++|...+.++.... |+ ....+.+...|...| +.|...++.+.+. .-.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE---ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7665322244556667777777888888888887764432 33 233444445556666 4677766666542 122
Q ss_pred ccHHHHHHHHHHHHhcCCchhhhHHHHHhC
Q 012577 403 ARFKQFQTLVQAYINAKTPAYGIRDRMRAD 432 (460)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~ 432 (460)
+....+..++.++...++ ...+++++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAI-AEKMWNKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhH-HHHHHHHhhcc
Confidence 333334444444332222 22233555544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.6e-10 Score=98.80 Aligned_cols=200 Identities=15% Similarity=0.046 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3455556666666677777777766666543 334555666666666666666666666666554322 33344444444
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc-CcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK-KLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
+...|++++|...++ ....... ......+..+...+...|++++|..
T Consensus 109 ~~~~g~~~~A~~~~~--------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 109 LCQQGKYEQAMQQFE--------------------------------QAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHcccHHHHHHHHH--------------------------------HHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555544444 4433211 1122344445555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+....+.. +.+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|+.++|..+.+.+..
T Consensus 157 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 157 YLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666665542 2344555566666666666666666666665442 22334455555666666666666666665544
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=2.1e-09 Score=99.89 Aligned_cols=293 Identities=15% Similarity=0.089 Sum_probs=208.4
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH-HHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT-LLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-ll~~~~ 104 (460)
.+......+...|++++|++.++..... +.............+.+.|+.++|..++..+....|+...|.. +..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 4444556678899999999999775544 3445667778899999999999999999999888787666554 444442
Q ss_pred c-----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012577 105 A-----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK---KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176 (460)
Q Consensus 105 ~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (460)
. ..+.+...++|+++...- |.......+.-.+.. |. ..+..++..+...|+++ +|+.|-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 2 235778888999887763 443333333222222 33 56777888888888643 5666666677666
Q ss_pred ChhHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 177 DLTGMDQVVEAMKSE----G----------IEPDS--STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~----g----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
..+-..+++...... + -+|+. .++..+...|-..|++++|+.++++.++..+. .+..|..-.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 666666666665432 1 13444 34466678888999999999999999887533 3567888889
Q ss_pred HHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH------HH--HHHHHHHH
Q 012577 241 LYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK------HY--TALLKVYA 310 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~--~~li~~~~ 310 (460)
.+-+.|++++|.+.++..+. ..|...-+-.+..+.+.|++++|.+++......+..|... .| .-...+|.
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776 3355666677888899999999999999888766433221 22 33467888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 012577 311 DHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~ 327 (460)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999998887776654
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1.4e-11 Score=115.10 Aligned_cols=273 Identities=14% Similarity=0.119 Sum_probs=152.3
Q ss_pred HHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC
Q 012577 115 VFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE 194 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (460)
.+-.+...|+.|+..||..+|.-|+..|+-++..+|..|.-...+.+...++.++.+....++.+.+. .
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 44455666666777777777777776666333336666666655666666666666666666666554 4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC-CHHHHHHHHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP-WLDVCMAAIEA 273 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~ 273 (460)
|...||..|..+|...|+..- |+...+ -.-.+...+...|.......++..+.-.| ....-.+.+..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH
Confidence 666667777777777666554 222221 11233444455555555555555433222 11122233334
Q ss_pred HHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh
Q 012577 274 WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH-KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (460)
....|.++.+++++..+...... .+... ++.-+... ..+++-..+.....+ .|++.+|..++.+-.-+|+.+.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 44455566666665544322111 11111 23322222 223333333333322 4777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 353 ADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
|..++.+|.+. |+..+...|..|+-+ .++..-++.+++.|.+.|+.|+..|+...+-.+.+.|.
T Consensus 223 Ak~ll~emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 223 AKNLLYEMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHc-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777777543 566666655555544 66777777777777777777777777777777766443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=2.3e-10 Score=109.87 Aligned_cols=209 Identities=8% Similarity=-0.100 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHH
Q 012577 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYA---------ELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEE 282 (460)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~ 282 (460)
++|...|++..+..+. +...|..+..++. ..+++++|...+++... .| +...+..+...+...|++++
T Consensus 278 ~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 278 QQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 5666666666654332 2334444443332 12335666666665544 33 44455556666666666666
Q ss_pred HHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 283 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
|...|++..+.++. +...+..+...+...|++++|...++...+.. +.+...+..++..+...|++++|...++++..
T Consensus 357 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 357 GSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 66666666665432 44556666666666666666666666666643 11222223333344455666666666666554
Q ss_pred hCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHH
Q 012577 363 QNKFKP-MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDR 428 (460)
Q Consensus 363 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 428 (460)
.. .| +...+..+..++...|+.++|...+.++.... +.+....+.+...|...|+.+...++.
T Consensus 435 ~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~a~~~l~~ 498 (553)
T PRK12370 435 QH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSERALPTIRE 498 (553)
T ss_pred hc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 12 22334555556666666666666666654432 223334444555556666544444433
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=3.8e-11 Score=112.26 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=187.2
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 90 FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 90 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
.|+.++|..+|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++ +.+. .|...+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 588899999999999999999999 99999888888889999999998888776 3332 6888999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME-GDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
..+|...||+.. |+...+ -...+...+...|--..-..++..+. ..+.-||..+ .+......|-
T Consensus 90 l~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~egl 154 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGL 154 (1088)
T ss_pred HHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHH
Confidence 999999999877 333222 12223445566676666666665543 2344455543 4444556777
Q ss_pred hhHHHHHHHHhccCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 248 ADQVARIWKLCESNPWLDVCMAAIEAWGKLN-KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 326 (460)
++.+.+++..+.........-.++.-+.... .+++-..+-+...+ .|++.+|..++..-...|+.+.|..++.+|.
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 8888887766543111111111243333322 23333333333322 4899999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 327 ESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 327 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+.|++.+..-|-.|+-+ .++...+..++.-|. ..|+.|+..|+...+..+.++|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcchh
Confidence 99999999888888876 778888888887774 55899999999988888888665
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=5.7e-13 Score=82.15 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV 208 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 208 (460)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=4.3e-10 Score=96.12 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH 312 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 312 (460)
+..+...+...|++++|...++.... .| +...+..+...+...|++++|.+.+++..+.... +...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHc
Confidence 33344444444444444444443322 22 2345556667777778888888888877776443 567788888999999
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGC-HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 391 (460)
|++++|...++...+... +.....+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987532 23456777788899999999999999999987643 345678888999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 392 IFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 392 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
.+++..+. .+.+...+..+...+...|+ .+..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999887 36677788888888888888 45555555443
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=8.9e-13 Score=81.27 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 368 PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
||..+|+++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998874
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=6.9e-11 Score=98.29 Aligned_cols=229 Identities=12% Similarity=0.050 Sum_probs=184.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
-+.+.++|.+.|.+.+|.+.|+..... .|-+.||-.|-..|.+..++..|+.++.+-.+.- +.|......+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 456788999999999999999888876 6778888889999999999999999998887652 2244344556778888
Q ss_pred cCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 245 LGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.++.++|.++++.+.+ . .++.....+...|.-.++++-|+.+|+++++.|+. ++..|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8999999999998766 3 35556667777888889999999999999999887 8888999988888899999999888
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 323 KQMAESGCHIG--PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 323 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
++....--.|+ ...|-.+.......|++..|.+.|+.....+ ......++.|...-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88876543343 3567777777888899999999998876654 345578888888888999999999999988764
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.1e-10 Score=97.03 Aligned_cols=226 Identities=11% Similarity=-0.024 Sum_probs=137.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQS 175 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (460)
+.+.++|.+.|.+.+|.+.|+.-++. .|-+.||-.|-..|.+.++ ..|..++.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34455555666666666555555544 3444455555555555555 5555555554443 122333334455566666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (460)
++.++|.++|+...+.. +.++.+...+...|.-.++++.|+.+|+.+.+-|+. ++..|+.+.-+|.-.+++|.++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66777777776666553 345555555566666666777777777777766654 4556666666666667777776666
Q ss_pred HHhcc---CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 256 KLCES---NPW--LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 256 ~~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
.+... +|+ ...|-.+.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 65543 232 335666666666777777777777777766544 5567777777777777777777777776653
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.5e-08 Score=90.88 Aligned_cols=265 Identities=11% Similarity=-0.029 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
.+...+.+...+.. ++....+..-|.++...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.++|.+.
T Consensus 261 ~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKa 338 (611)
T KOG1173|consen 261 KECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKA 338 (611)
T ss_pred HHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHH
Confidence 44444554444442 4444455555555555555555444444555442 334555666555555556666666666655
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH
Q 012577 224 EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301 (460)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 301 (460)
..-+..- ...|-.+..+|+..|..|+|...+....+ .+.-..+.-+.--|.+.+.++.|.++|.+.....+. |+..
T Consensus 339 t~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv 416 (611)
T KOG1173|consen 339 TTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLV 416 (611)
T ss_pred hhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchh
Confidence 4433221 23555556666666666666555543322 111111222333455566666666666665554322 5555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAES----G--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
.+-+.-.....+.+.+|..+|+..+.. + .+.-..+++.|.++|.+.+.+++|+..+++.....+ -+..++.+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--k~~~~~as 494 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP--KDASTHAS 494 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC--CchhHHHH
Confidence 555555555556666666666655421 0 001223456666666666666666666666655432 34446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 012577 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI 416 (460)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 416 (460)
+.-.|...|+++.|++.|.+..- +.|+..+-..++..+.
T Consensus 495 ig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 66666666666666666666654 3455545555544443
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=7.3e-09 Score=96.33 Aligned_cols=289 Identities=10% Similarity=0.069 Sum_probs=203.8
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCCchh-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH-HHHhcC-
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFRGEV-VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI-LYKRLD- 142 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~- 142 (460)
....+...|++++|++.++.-...-.|.. ........+.+.|+.++|..+|..+++.+ |+...|...+. +..-..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34566788999999999998766556654 45667788999999999999999999986 55555554444 442211
Q ss_pred ----c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 012577 143 ----K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT-GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKA 216 (460)
Q Consensus 143 ----~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 216 (460)
. .....+++.+... -|.......+.-.+.....+. .+..++..+...|+++ +|+.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 2 5666788877665 344444433333333323333 4556667777888643 566666666655555555
Q ss_pred HHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccC
Q 012577 217 EAMLKEMEGD----N----------LKEHR--WTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLN 278 (460)
Q Consensus 217 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~ 278 (460)
.+++...... + -+|.. +++..+...|...|++++|...++.... .|+ +..|..-...+-+.|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 5555554432 1 12333 3556677888899999999999997665 565 557888899999999
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHcCCCh
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLA--------WDALVKLHVEGGEV 350 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~~~~ 350 (460)
++.+|.+.++..+..+.. |-..-+..+..+.+.|++++|.+++....+.+..|-... ..-...+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999987665 777888888999999999999999999887765442221 23456778889999
Q ss_pred hhHHHHHHHHHH
Q 012577 351 EKADSILLKAQQ 362 (460)
Q Consensus 351 ~~a~~~~~~~~~ 362 (460)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888877655
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.3e-07 Score=79.30 Aligned_cols=413 Identities=11% Similarity=0.071 Sum_probs=234.3
Q ss_pred CCHHHHHHHHHHHH----hcccchhHHHHHHHHHhcc------------------cCCCChhhhHHHHHHHHHhhCHHHH
Q 012577 22 LSRAEIALAMANLR----TRRMYGKALQLSEWLETNK------------------KLDFIERDYASCLDLIAKLRGLQKA 79 (460)
Q Consensus 22 ~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~a 79 (460)
.+++....++..+. +.+.+..|.+-|....... ..+.+...-...+.+|...++-+.|
T Consensus 37 ~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~A 116 (564)
T KOG1174|consen 37 ATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMA 116 (564)
T ss_pred cCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHH
Confidence 35555555555543 4455566666666554332 1112333444567777788888889
Q ss_pred HHHHHhcccCCCchhHHHHHHHHHHcC-CC-HHHH-------------HHHHHHHHhCC---------------CCCChh
Q 012577 80 ESYIQKIPESFRGEVVYRTLLANCVAG-NN-VKKA-------------EEVFNRMKDKG---------------FPVTSF 129 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~-~~~a-------------~~~~~~m~~~g---------------~~~~~~ 129 (460)
......++..... .--|.++.-+-+. ++ .+++ ++.+.-..+.+ ++|...
T Consensus 117 i~~l~~~p~t~r~-p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~d 195 (564)
T KOG1174|consen 117 IETLLQVPPTLRS-PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFD 195 (564)
T ss_pred HHHHhcCCccccc-hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCcc
Confidence 9888888764222 2223333222222 21 2222 22222222222 223333
Q ss_pred hhHHHHHHHHhc---CchHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 130 ACNQLLILYKRL---DKKKVADVLLLMEKE-NVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK 205 (460)
Q Consensus 130 ~~~~ll~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 205 (460)
+...-+.+++.. .+..+...+-.+... -++-|+.....+.+.+...|+.++|+..|+.....+ +-+........-
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~ 274 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHH
Confidence 333444444332 224444444333332 356678888999999999999999999999887553 122223333333
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a 283 (460)
.+.+.|+++....+...+....- -+...|-.-.......+++..|+.+-++... +| ++..+-.-...+...++.++|
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHH
Confidence 44677888877777766654321 1122222233344456677777777776554 23 444554445666777888888
Q ss_pred HHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HcCCChhhHHHHHHHHH
Q 012577 284 EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV-KLH-VEGGEVEKADSILLKAQ 361 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~~~~~~a~~~~~~~~ 361 (460)
.-.|+......+ -+...|..|+..|...|++.+|...-+...+. ++.+..+...+. ..| .....-++|..++++..
T Consensus 354 ~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 888887766433 26778888888888888888888777666554 344555555442 222 22334567777777765
Q ss_pred HhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCH-H
Q 012577 362 QQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNK-A 439 (460)
Q Consensus 362 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~-~ 439 (460)
+. .|+ ....+.+...+...|..++++.++++... ..||....+.|.+.+......-.++-.--++..+.|+. .
T Consensus 432 ~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 432 KI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred cc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 43 343 23445666677777888888888887775 36777777777777776666333333333344455543 3
Q ss_pred HHHHH
Q 012577 440 LAAQV 444 (460)
Q Consensus 440 ~~~~l 444 (460)
+..-|
T Consensus 507 sl~Gl 511 (564)
T KOG1174|consen 507 TLRGL 511 (564)
T ss_pred HHHHH
Confidence 44433
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.5e-09 Score=99.58 Aligned_cols=196 Identities=15% Similarity=0.101 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccC--------CCchhH-HHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CC
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPES--------FRGEVV-YRTLLANCVAGNNVKKAEEVFNRMKDK-----G--FP 125 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g--~~ 125 (460)
+...+...|...|+++.|..+++..... .|.+.+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334555555555555555555443221 122222 223444555555555555555555421 1 11
Q ss_pred CChhhhHHHHHHHHhcCc-hHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHHhhcCChhHHHHHHHHHHhC---CCC
Q 012577 126 VTSFACNQLLILYKRLDK-KKVADVLLLMEK-----ENV-KLTQF-SYKILIDIKGQSNDLTGMDQVVEAMKSE---GIE 194 (460)
Q Consensus 126 ~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~-----~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~ 194 (460)
.-..+++.|-.+|.+.|+ .+|...++.... .|. .|.+. .++.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 112334444445555555 433333332211 111 22222 3566777788888888888888765432 111
Q ss_pred C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 195 P----DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-------LKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 195 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+ -..+++.|...|...|++++|..++++++... ..-....++.+...|.+.+++..|.++|.+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 24577888888888888888888888776421 111234556666667666776666666654
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.1e-07 Score=83.90 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=182.8
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+.-.|+.-.|..-|+..+.... .+...|--+..+|....+.++..+.|.+..+.+.. ++.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 34557899999999999997752 23333777888899999999999999999987754 56778888888888899999
Q ss_pred HHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 251 VARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 251 a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|..=|+.... .| +...|--+..+..+.++++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998876 44 5667777888888999999999999999987 4447889999999999999999999999998874
Q ss_pred CCC-------CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 329 GCH-------IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 329 ~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
.-. +.+.+...++..-.+ +++..|..++.++.+.++ -....|..|...-.+.|+.++|+++|++....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dp--kce~A~~tlaq~~lQ~~~i~eAielFEksa~l-- 566 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDP--KCEQAYETLAQFELQRGKIDEAIELFEKSAQL-- 566 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 211 112222333333233 899999999999987542 23467899999999999999999999988754
Q ss_pred CccHHHHHHHHHHHH
Q 012577 402 VARFKQFQTLVQAYI 416 (460)
Q Consensus 402 ~~~~~~~~~l~~~~~ 416 (460)
..|-.-++++|.
T Consensus 567 ---Art~~E~~~a~s 578 (606)
T KOG0547|consen 567 ---ARTESEMVHAYS 578 (606)
T ss_pred ---HHhHHHHHHHHH
Confidence 234444555544
No 70
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.7e-09 Score=87.90 Aligned_cols=322 Identities=11% Similarity=0.018 Sum_probs=204.5
Q ss_pred hCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHH
Q 012577 18 EGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYR 97 (460)
Q Consensus 18 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (460)
.|..+....+..++..+.+..++..|++++..-.++. +.+....+.+..+|....++..|...++++....|...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 3555566678888888999999999999998777664 44777888899999999999999999999988777766665
Q ss_pred HH-HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH--hcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012577 98 TL-LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK--RLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKG 173 (460)
Q Consensus 98 ~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (460)
.. ...+-+.+.+..|+++...|... |....-..-+.+.. ..++ ..+..++++....| +..+.+...-...
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 43 45677889999999999888763 22222222222222 2233 56666776665432 3444444455567
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVAR 253 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 253 (460)
+.|+++.|.+-|+...+-|--.....||..+ ++.+.|+++.|++...+++++|++-.+.. + .|...+..+
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiD 225 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGID 225 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCc
Confidence 8999999999999988764344466787766 56678999999999999999886532210 0 000000000
Q ss_pred ---HHH--HhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-ccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 254 ---IWK--LCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 254 ---~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+-. .+....-+..+|.-...+.+.++++.|.+.+-+|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+
T Consensus 226 vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 226 VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 000 0000111223344444556677777777777777533 2234556655443221 23445455555555555
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
.+ +-...||..++-.||+..-++.|-.++.+
T Consensus 305 ~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 305 QN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 43 33467777777778887777777777644
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=3.3e-09 Score=97.41 Aligned_cols=236 Identities=17% Similarity=0.146 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhC-----CC-
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSE-----GI-EPDSS-TQAILAKHYVSGGRKEKAEAMLKEMEGD-----NL- 228 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 228 (460)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888999999999999999887654 21 23333 3344777888889999999999888652 21
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc---------CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhc---c
Q 012577 229 -KEHRWTCRLLLPLYAELGKADQVARIWKLCES---------NPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKT---W 294 (460)
Q Consensus 229 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~ 294 (460)
+--..+++.|..+|.+.|++++|...+++... .|.+. .++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11235677777788889998888877765322 12222 3566777788888888888888765432 1
Q ss_pred cCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--C-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 295 KKL----STKHYTALLKVYADHKMLSKGKDLVKQMAESG----C--H-IGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 295 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+.+ -..+++.|...|...|++++|.++++.++... - . -....++.+...|.+.+..++|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 23567888888888888888888888776421 1 1 12356677777888888888888877765321
Q ss_pred ----CCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 364 ----NKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 364 ----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
.+-.|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111233 3567788888888888888888877665
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=9e-09 Score=81.91 Aligned_cols=197 Identities=11% Similarity=0.008 Sum_probs=131.1
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+...|.-.|...|+...|.+-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667778888888888888877764 445677777777788888888888888877765443 4456666666677
Q ss_pred hcCChhHHHHHHHHhccCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 244 ELGKADQVARIWKLCESNPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
..|++++|...|+.....|. ..+|..+.-+..+.|+++.|.+.|++.++.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 77777777777776666552 335666666666777777777777776665443 4455666666666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.+++.....+ .++....-..|+.-...|+.+.+-++=..+...+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7766666554 3666666666666666677666666655554443
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=3.1e-07 Score=83.99 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHIG-PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (460)
.++..+-+.|+++.|..+++....+ .|+ +..|..=.+.+...|++++|..++++..+.+ .||...-..-..-..+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHH
Confidence 4566667777777777777777765 233 3445555566677777777777777765543 4554444455555667
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 012577 383 RGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 383 ~g~~~~a~~~~~~m~~~~ 400 (460)
.++.++|.++.....+.|
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 777777777777776665
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-06 Score=79.57 Aligned_cols=336 Identities=13% Similarity=0.078 Sum_probs=185.2
Q ss_pred HHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-ChhhhHHHHHHHHhcCchHHHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV-TSFACNQLLILYKRLDKKKVADV 149 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~a~~~ 149 (460)
.+.+..++|+..++-... .+..+...-...+-+.|++++|+++|+.+.+.+.+- |...-..++.+-. ...
T Consensus 90 Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~ 160 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQ 160 (652)
T ss_pred HHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhh
Confidence 344555555555552222 122233333344556677777777777776654221 1111111111100 000
Q ss_pred HHHHHHcCCCCCHHHHHHH---HHHHhhcCChhHHHHHHHHHHhC-------C------CCCCHH-HHHHHHHHHHhCCC
Q 012577 150 LLLMEKENVKLTQFSYKIL---IDIKGQSNDLTGMDQVVEAMKSE-------G------IEPDSS-TQAILAKHYVSGGR 212 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~-------g------~~~~~~-~~~~l~~~~~~~~~ 212 (460)
.+.+......| ..+|..+ .-.+...|++.+|+++++...+. + +..... .-.-|.-.+-..|+
T Consensus 161 ~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11222222233 2233333 34566789999999999888321 1 111111 12234455678899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChh-HHHHHHH-------------------------------
Q 012577 213 KEKAEAMLKEMEGDNLKEHRWTC----RLLLPLYAELGKAD-QVARIWK------------------------------- 256 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-~a~~~~~------------------------------- 256 (460)
..+|..+|...++.... |.... |.|+.+-....-++ .++..++
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887643 43222 22222111111111 0000000
Q ss_pred ----------HhccCC---CHHHHHHHHHHHH--ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 257 ----------LCESNP---WLDVCMAAIEAWG--KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 257 ----------~~~~~~---~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
.....| ....+.+++.... +......+.+++...-+....-...+.-.++......|+++.|.++
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 000111 1122333333322 2224566777777666654433355667778888999999999999
Q ss_pred HH--------HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-CcC----HHHHHHHHHHHHhcCCHHH
Q 012577 322 VK--------QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-KPM----FSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 322 ~~--------~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~ 388 (460)
+. .+.+.+. .+.+...++..+.+.++.+.|..+++++...... .+. ..++......-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99 4544443 3456677788888888888888888777542110 111 1233444445567899999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 389 TEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 389 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
|..+++++.+.+ ++|..+...++.+|++..-
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 999999999986 8999999999999998875
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.6e-07 Score=78.46 Aligned_cols=295 Identities=11% Similarity=0.049 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCChhHHH
Q 012577 106 GNNVKKAEEVFNRMKDKG-FPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQF-SYKILIDIKGQSNDLTGMD 182 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~ 182 (460)
.++...|...+-.+.... ++-++.....+...+...|+ .++...|+..... .|+.. ......-.+.+.|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 445445554444333322 45567778888889999998 9999999887754 33322 2222233346788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C
Q 012577 183 QVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N 261 (460)
Q Consensus 183 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 261 (460)
.+...+.... ......|-.-+......+++..|+.+-++.++.+.. +...|-.-..++...|++++|.--|+.... .
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 8777776442 234455555555666788999999999988876543 445555556788899999999999987665 3
Q ss_pred -CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 012577 262 -PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL-KVYAD-HKMLSKGKDLVKQMAESGCHIG-PLAW 337 (460)
Q Consensus 262 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~~~~~~~~~~~~~~~-~~~~ 337 (460)
.+...|..|+.+|...|++.+|.-+-+...+. .+-+..+.+.+. ..+.- ...-++|.++++...+. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 47789999999999999999998877765553 223566666553 33332 33457899999887774 454 3566
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 338 DALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+++|++.|....+.+ |.|..+...|
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~Gl 511 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHHHH
Confidence 77888899999999999999998764 4888999999999999999999999999999876 5555555443
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=1.7e-06 Score=79.23 Aligned_cols=418 Identities=11% Similarity=0.121 Sum_probs=263.0
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccC-----CCChhhhHHHHHHHHHhhC---HHHHHHHHHhcccCCCch
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKL-----DFIERDYASCLDLIAKLRG---LQKAESYIQKIPESFRGE 93 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 93 (460)
++|......+..|++.+++++|.+.+........+ +.+...+..+.+..+++-+ --....++..+...++|.
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence 56777778888888888888888887766544311 2234445555555554433 223445566666666664
Q ss_pred --hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHH-----------------------
Q 012577 94 --VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVAD----------------------- 148 (460)
Q Consensus 94 --~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~----------------------- 148 (460)
..|.+|...|.+.|.+++|.++|++.... ..+..-|..+.++|+.........
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 56999999999999999999999998775 346667777777776554311111
Q ss_pred HHHHHHHcC-----------CCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhCC
Q 012577 149 VLLLMEKEN-----------VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP------DSSTQAILAKHYVSGG 211 (460)
Q Consensus 149 ~~~~~~~~~-----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------~~~~~~~l~~~~~~~~ 211 (460)
-|+.+...+ -+-++..|..-+ -+..|+..+-...|.+.... +.| -...|..+...|-..|
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 111111110 011222332222 22356677777778777654 122 1356888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhccCC--------------------CHHHHH
Q 012577 212 RKEKAEAMLKEMEGDNLKEH---RWTCRLLLPLYAELGKADQVARIWKLCESNP--------------------WLDVCM 268 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~ 268 (460)
+.+.|..+|++..+-..+-- ..+|..-.+.=.+..+++.|+++.+....-| +...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 99999999999987654322 3456666666677888999999887654322 122344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc-
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVE- 346 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~- 346 (460)
-.++.--..|-++....+|+.+.+..+. ++...-.....+-.+.-++++.++++.-+..=-.|+. ..|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 5555556678899999999999987654 4444433444455566688888888775554223443 466665555543
Q ss_pred --CCChhhHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHH-hcC
Q 012577 347 --GGEVEKADSILLKAQQQNKFKPMFSS--YMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR--FKQFQTLVQAYI-NAK 419 (460)
Q Consensus 347 --~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~-~~g 419 (460)
...++.|..+|+++.+ +++|...- |-.....--+.|-...|+.++++.... +++. ...||..|.--. .-|
T Consensus 561 ygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred hcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC
Confidence 3468999999999987 55564322 222222223458888999999997653 4443 245777664333 335
Q ss_pred C-chhhhHHHHHhCCCCcCHHHHHHHHHHHHH
Q 012577 420 T-PAYGIRDRMRADNVFPNKALAAQVAQVDAF 450 (460)
Q Consensus 420 ~-~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 450 (460)
- ....++++-.+. -|+......-.+...+
T Consensus 638 v~~TR~iYekaIe~--Lp~~~~r~mclrFAdl 667 (835)
T KOG2047|consen 638 VPRTREIYEKAIES--LPDSKAREMCLRFADL 667 (835)
T ss_pred CcccHHHHHHHHHh--CChHHHHHHHHHHHHH
Confidence 4 566777666654 7777777766555555
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=5e-07 Score=76.66 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=66.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-CCCHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhcccCcCH-HHHHHHHHHHH
Q 012577 238 LLPLYAELGKADQVARIWKLCES-NPWLDVCM-----AAIEAWGKLNKVEEAEAVFKRMSKTWKKLST-KHYTALLKVYA 310 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 310 (460)
|+--|.+.+++++|..+.+.+.. .|-..... ++..-.....++.-|.+.|+-.-+.+..-|. ..-.++...+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 34456677777777777766543 22222222 2222222223344555555544443322221 12233333333
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHH
Q 012577 311 DHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSY-MLIMDQYAKRGDIHST 389 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a 389 (460)
-..++++++.++..+... +..|...--.+.++++..|.+.+|.++|-.+.. ..++ |..+| ..+.++|.++++++.|
T Consensus 371 L~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 344455555555555443 222222222345555555555555555544321 1112 22333 2334455555555555
Q ss_pred HHHH
Q 012577 390 EKIF 393 (460)
Q Consensus 390 ~~~~ 393 (460)
++++
T Consensus 448 W~~~ 451 (557)
T KOG3785|consen 448 WDMM 451 (557)
T ss_pred HHHH
Confidence 4443
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=7.4e-08 Score=84.83 Aligned_cols=227 Identities=11% Similarity=0.063 Sum_probs=130.1
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012577 176 NDLTGMDQVVEAMKSEG-IEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA 252 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (460)
+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555431 1111 344566666666777777777777776665432 4566667777777777777777
Q ss_pred HHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 253 RIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 253 ~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
..|+.... .| +...+..+...+...|++++|.+.|+...+..+ +..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77766544 34 345666677777777788888888777776533 22211222222344667888888876654332
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-----MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF 405 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 405 (460)
.|+...+ . ......|+...+ +.+..+.+.....+ ....|..+...+.+.|++++|+..|++..+.+ +||.
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2332221 1 222334555444 34444432111111 22467777888888888888888888888766 5555
Q ss_pred HHHHHH
Q 012577 406 KQFQTL 411 (460)
Q Consensus 406 ~~~~~l 411 (460)
+-+...
T Consensus 271 ~e~~~~ 276 (296)
T PRK11189 271 VEHRYA 276 (296)
T ss_pred HHHHHH
Confidence 544443
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-06 Score=82.04 Aligned_cols=203 Identities=11% Similarity=-0.015 Sum_probs=133.6
Q ss_pred CCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH
Q 012577 56 LDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL 134 (460)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 134 (460)
+..++..|-.+.-++..+|+++.+.+.|++.... ......|+.+...|...|.-..|..+++.-......|+..+--.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 4567788888888899999999999999986543 456678999999999999999999998876654322333332222
Q ss_pred H-HHHHhc-Cc-hHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHhhc-----------CChhHHHHHHHHHHhCCCCCC
Q 012577 135 L-ILYKRL-DK-KKVADVLLLMEKE--NV--KLTQFSYKILIDIKGQS-----------NDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 135 l-~~~~~~-~~-~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~~~ 196 (460)
. ..|.+. +. +++.++-.+..+. +. ......|..+.-+|... ....++++.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 2 233332 22 4444444444331 10 12233444444444321 12356777888887664 233
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
..+.-.+.--|+..++.+.|.+..++..+-+..-+...|..+.-.+...+++.+|+.+.+...
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333333444577888999999999999887666688888888888888999999988877543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=6.3e-08 Score=85.25 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
...|+.+...+...|++++|.+.|+...+.. +-+..+|..+..++...|++++|.+.|+...+
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444332 12233444444444444444444444444443
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=1.2e-07 Score=75.63 Aligned_cols=195 Identities=18% Similarity=0.143 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHcc
Q 012577 200 QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKL 277 (460)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~ 277 (460)
...|.-.|...|+...|..-+++.++.+.. +..++..+...|.+.|+.+.|.+.|+...+ .| +..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 334555666666666666666666665432 344555555555556665555555554433 22 333445555555555
Q ss_pred CCHHHHHHHHHHHHhcccCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWKKL-STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (460)
|++++|...|++....-.-| -..+|..+..+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 55555555555555431111 12345555555555555555555555555542 22334444455555555555555555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 357 LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
++...... .++..+.-..|+.-.+.|+-+.+-++=.++.+
T Consensus 196 ~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55543322 24444444444444555555544444444433
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.3e-06 Score=71.83 Aligned_cols=387 Identities=12% Similarity=0.066 Sum_probs=219.2
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCChhhhHH-HHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCC
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS-CLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNN 108 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~ 108 (460)
+..+...+++..|+.+++.-...+ .-....... +..++.+.|++++|...++.+... .++...+-.|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 555667788999999887765433 112223333 445667889999999999886554 5677777778777777888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHH-HHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVL-LLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (460)
+.+|..+-.+.. .++-.-..++...-+.++++-..-| +.+.+ +..---+|.+.....-.+++|++++..
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888887765432 2333344455555666664433333 33322 112233455555556678888888888
Q ss_pred HHhCCCCCCHHHHHHHHH-HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChh---------------
Q 012577 188 MKSEGIEPDSSTQAILAK-HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE--LGKAD--------------- 249 (460)
Q Consensus 188 m~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~--------------- 249 (460)
.... .|+-...|.-+. +|.+..-++-+.++++-..+.- +-++...+.......+ .|+..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 8765 355555554443 5566666777777776665542 2223333333222222 12211
Q ss_pred -HHHHHHHHhc-----------cCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHH-----H
Q 012577 250 -QVARIWKLCE-----------SNP-----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL-----K 307 (460)
Q Consensus 250 -~a~~~~~~~~-----------~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-----~ 307 (460)
.+..+.+.-. .-| -+..-..++-.|.+.+++.+|..+.+++.- ..|-......+. +
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQ 331 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhh
Confidence 1111111000 001 111233456678889999999988776543 122222222221 1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012577 308 VYADHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDI 386 (460)
Q Consensus 308 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (460)
-......+.-|...|+..-+.+..-|. .--.++...+.-..++++.+-++..+..-. ...|...+ .+..+++..|++
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~-N~AQAk~atgny 409 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNL-NLAQAKLATGNY 409 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhh-HHHHHHHHhcCh
Confidence 111222345566777666555433222 122344455555567889998888774432 33443333 467899999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHH-HHHHHHHhcCCchhhhHHHHHhCCCCcCH
Q 012577 387 HSTEKIFHRMRQVGYVARFKQFQ-TLVQAYINAKTPAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 387 ~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~~m~~~~~~p~~ 438 (460)
.+|+++|-++....++ |..+|. .|.++|.+.|++.. .++.|...+-+.+.
T Consensus 410 ~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l-AW~~~lk~~t~~e~ 460 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL-AWDMMLKTNTPSER 460 (557)
T ss_pred HHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH-HHHHHHhcCCchhH
Confidence 9999999888766555 445555 45567777776433 35566665544333
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=1.9e-06 Score=78.87 Aligned_cols=193 Identities=13% Similarity=0.029 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHhhCHHHHHHHHHhcccCCC---ch-hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFR---GE-VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
..+..+...+...|+.+.+...+.......+ +. .........+...|++++|.+.+++..+.. |.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455555556666666666555555433211 11 112222334556777777777777776653 223333332 11
Q ss_pred HHHhc----Cc-hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 012577 137 LYKRL----DK-KKVADVLLLMEKENVKLT-QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210 (460)
Q Consensus 137 ~~~~~----~~-~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 210 (460)
.+... +. ..+.+.+.. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111 11 333333332 1111222 2233344455666666666666666666554 33455556666666666
Q ss_pred CChHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 211 GRKEKAEAMLKEMEGDNLK-EHR--WTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
|++++|...+++....... |+. ..|..+...+...|++++|..+++..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666665543221 111 12334444455555555555555443
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-05 Score=75.29 Aligned_cols=394 Identities=10% Similarity=-0.006 Sum_probs=244.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC
Q 012577 11 TLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF 90 (460)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (460)
.+.++.......++..+..+.-.+...|++..+.+.|+.....- -...+.|..+...+..+|.-..|..+.+.-....
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 34444444556788899999999999999999999998876432 2356788889999999999999999999865543
Q ss_pred --C-chhHHHHHHHHHH-cCCCHHHHHHHHHHHHhC--CC--CCChhhhHHHHHHHHhcCc------------hHHHHHH
Q 012577 91 --R-GEVVYRTLLANCV-AGNNVKKAEEVFNRMKDK--GF--PVTSFACNQLLILYKRLDK------------KKVADVL 150 (460)
Q Consensus 91 --~-~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~~~------------~~a~~~~ 150 (460)
| +...+-..-..|. +.+..+++++.-.+.... +. ...+..|..+.-+|...-. .++.+.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3 3333333334443 456777777776666551 11 1123344444444432211 4566777
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CC
Q 012577 151 LLMEKEN-VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NL 228 (460)
Q Consensus 151 ~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 228 (460)
++..+.+ -.|++..| +.--|+..++++.|++...+..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 7777664 23444433 44457788999999999999998855778999999999999999999999999876643 21
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH-------HH-------------------Hhcc---CC--CHHHHHHHHHHHH-c
Q 012577 229 KEHRWTCRLLLPLYAELGKADQVARI-------WK-------------------LCES---NP--WLDVCMAAIEAWG-K 276 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~-------~~-------------------~~~~---~~--~~~~~~~li~~~~-~ 276 (460)
|-.....-++.-...++.+++... |+ .+.. ++ ...++..+..-.. +
T Consensus 546 --N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 546 --NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred --hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 000001111111223444443322 22 1110 01 1112221111111 1
Q ss_pred c--CCHHHHHHHHHHHHhcc--cCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 277 L--NKVEEAEAVFKRMSKTW--KKLS------TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 277 ~--~~~~~a~~~~~~m~~~~--~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
. -..+.. +...- ..|+ ...|......+.+.++.++|...+.+.... .+.....|......+..
T Consensus 624 ~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 624 LKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEV 696 (799)
T ss_pred hhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHH
Confidence 0 001111 11111 1122 234556667777778888887777777664 35566677777777777
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK--IFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.|..++|.+.|......+|- ++....++..++.+.|+..-|.. ++.++.+.+ +.+...|-.|...+-+.|+
T Consensus 697 ~~~~~EA~~af~~Al~ldP~--hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPD--HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 88888888888777654432 33566777888888887777776 888888877 6778888888888888888
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=3e-08 Score=85.99 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hhHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV-EKADSI 356 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~ 356 (460)
+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4567777777776654 34566777777777777777777777777766543 34566666666666666666 556666
Q ss_pred HHHHHHhC
Q 012577 357 LLKAQQQN 364 (460)
Q Consensus 357 ~~~~~~~~ 364 (460)
+.++....
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 66665443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.7e-06 Score=79.06 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C---CCH--HHHHHHHHHH
Q 012577 201 AILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N---PWL--DVCMAAIEAW 274 (460)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~---~~~--~~~~~li~~~ 274 (460)
..+...+...|++++|...+++..+.... +...+..+..++...|++++|...++.... . +.. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34444555556666666666655554322 334445555555556666666655554433 1 111 1233445555
Q ss_pred HccCCHHHHHHHHHHHH
Q 012577 275 GKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~ 291 (460)
...|++++|..++++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 55566666666665554
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=4.5e-08 Score=84.91 Aligned_cols=257 Identities=12% Similarity=0.054 Sum_probs=165.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
++-+.-.|++..++.-.+ .....-+.+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888876665 222221223445566777888888877544 3443333 56666665565555444555
Q ss_pred hHHHHHHHHhccCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 249 DQVARIWKLCESNP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 249 ~~a~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+.+..-++.....+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55655555443322 2222223335567789999999888643 2567777888999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHH----cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 325 MAESGCHIGPLAWDALVKLHV----EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|.+. ..| .+...+..++. -.+.+.+|..+|+++.++. .++..+.+.+..++...|++++|.+++++..+.+
T Consensus 157 ~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9874 334 33444444433 2346999999999986653 5677888999999999999999999999988766
Q ss_pred CCccHHHHHHHHHHHHhcCCc---hhhhHHHHHhCCCCcCHHHHHHH
Q 012577 401 YVARFKQFQTLVQAYINAKTP---AYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~g~~---~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
+-++.++..++.+....|+. +...+.+++. ..|+.....-+
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~~~~~~ 275 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHPLVKDL 275 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCChHHHHH
Confidence 55777888888888888885 5566666665 36665554444
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.04 E-value=2.9e-07 Score=91.10 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=183.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH-HHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKE---HRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD-VCM 268 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 268 (460)
+.+...|-..|....+.++.++|.++.++++.. ++.- -.-.|.++++.-...|.-+...++|++.-+--+.. .|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 556778888898999999999999999988764 1211 12467778887778888888999999887755554 688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHc
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALVKLHVE 346 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 346 (460)
.|...|.+.+.+++|.++++.|.+.-- -....|...+..+.++++-+.|..++.++.+. .+- ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999998633 47789999999999999999999999999875 222 35667777888889
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCC
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF--KQFQTLVQAYINAKT 420 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~ 420 (460)
.|+.+.+..+|+.....++-+-| .|+.+++.-.+.|+.+.++.+|++....++.|.. ..|.-++.-=-+.|+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 99999999999999887765554 8999999999999999999999999999887753 467777776667777
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=1e-05 Score=74.40 Aligned_cols=396 Identities=12% Similarity=0.109 Sum_probs=252.4
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~ 102 (460)
...+..-+..+...+++...+.+.+.+... ++-..++.....--+...|+-++|.......... ..+.+.|..+.-.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 334444444456678899999999988885 4666777777777778889999999988886554 5678899999988
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
+....++++|++.|......+ +.+...+.-+-..-++.++ +...+....+.+.. +-....|..+..++.-.|+...|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998875 3355666655555566666 44445555555442 33445788888899999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHH------HHhCCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHH
Q 012577 182 DQVVEAMKSEG-IEPDSSTQAILAKH------YVSGGRKEKAEAMLKEMEGDNLKEHRWTC-RLLLPLYAELGKADQVAR 253 (460)
Q Consensus 182 ~~~~~~m~~~g-~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~ 253 (460)
..+.++..+.. -.|+...|...... ..+.|.+++|.+-+..-... + .|...+ ..-...+.+.+++++|..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 99999988664 24666666554433 34578888888777655433 2 233333 345677889999999999
Q ss_pred HHHHhcc-CCCHHHHHHH-HHHHHccCCHHHHH-HHHHHHHhccc---CcC----------------------------H
Q 012577 254 IWKLCES-NPWLDVCMAA-IEAWGKLNKVEEAE-AVFKRMSKTWK---KLS----------------------------T 299 (460)
Q Consensus 254 ~~~~~~~-~~~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~~~---~p~----------------------------~ 299 (460)
++..+.. .|+...|.-. ..++.+.-+..++. .+|....+.-. .|- +
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9998776 7877766544 44444333333344 56655443211 000 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----H--cCC------------CCCHHH--HHHHHHHHHcCCChhhHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMA----E--SGC------------HIGPLA--WDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~--~~~------------~~~~~~--~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
.++..+...|-.....+ +++++. . .|. +|+... +-.++..+-+.|+++.|..+++.
T Consensus 321 ~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 11222222221111111 222221 1 011 344433 34567778889999999999998
Q ss_pred HHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCC
Q 012577 360 AQQQNKFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADN 433 (460)
Q Consensus 360 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~ 433 (460)
++... |+. ..|..-.+.+...|++++|..++++..+.+ .||...=.--..-..+..+ .|..+.......|
T Consensus 397 AIdHT---PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 397 AIDHT---PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HhccC---chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 87543 443 345555677888899999999999998877 5554433233333444444 3444444444433
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2e-05 Score=71.00 Aligned_cols=373 Identities=11% Similarity=-0.000 Sum_probs=222.4
Q ss_pred HHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHH
Q 012577 33 NLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKK 111 (460)
Q Consensus 33 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 111 (460)
.....|+++.|+..|....... |++.-.|+.-..+|++.|++++|++--.+-.+..|+ ...|.-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4567799999999998877664 557777888999999999999999888877776676 4678899999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHH------HHHHHHHcC---CCCCHHHHHHHHHHHhh--------
Q 012577 112 AEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVAD------VLLLMEKEN---VKLTQFSYKILIDIKGQ-------- 174 (460)
Q Consensus 112 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~------~~~~~~~~~---~~~~~~~~~~li~~~~~-------- 174 (460)
|+..|.+-++.. +.+...++-+..++... ..+.+ ++..+.... .......|..++..+-+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999887763 33555566666555111 01111 111110000 00000112222221111
Q ss_pred --cCChhHHHHHHHHH-----HhCC-------CCC------------C----------HHHHHHHHHHHHhCCChHHHHH
Q 012577 175 --SNDLTGMDQVVEAM-----KSEG-------IEP------------D----------SSTQAILAKHYVSGGRKEKAEA 218 (460)
Q Consensus 175 --~~~~~~a~~~~~~m-----~~~g-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~ 218 (460)
...+..|...+... ...| ..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00111111111000 0000 011 0 1124456666677777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC-C-HH-------HHHHHHHHHHccCCHHHHHHHHHH
Q 012577 219 MLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP-W-LD-------VCMAAIEAWGKLNKVEEAEAVFKR 289 (460)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~-------~~~~li~~~~~~~~~~~a~~~~~~ 289 (460)
-+....+.. -+..-++....+|...|.+......-....+.. . .. .+..+..+|.+.++++.|+..|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 777766654 244444555566666666655544433222111 0 01 112233455556667777777766
Q ss_pred HHhcccCcCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 290 MSKTWKKLSTKH-------------------------YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 290 m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
.......|+..+ ...-...+.+.|++..|+..|.+++... +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 554433333221 1112445667899999999999999885 67889999999999
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.+.|.+..|+.=.+...+.++ +....|..-..++.-..++++|.+.|++.++.+ |+..-+...+.-|..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p--~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDP--NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999999998888776542 223344444555666678999999999998865 555555555555555
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=2.7e-05 Score=80.70 Aligned_cols=332 Identities=9% Similarity=0.047 Sum_probs=208.2
Q ss_pred HHHHHhhCHHHHHHHHHhcccC--CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC------CCChh--hhHHHHHH
Q 012577 68 DLIAKLRGLQKAESYIQKIPES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGF------PVTSF--ACNQLLIL 137 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------~~~~~--~~~~ll~~ 137 (460)
..+...|+++.+..+++.++.. ..+..........+...|++++|...+....+.-- .+... ....+-..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445567888888888877532 11222223344455678999999999987754311 11111 11112224
Q ss_pred HHhcCc-hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHH
Q 012577 138 YKRLDK-KKVADVLLLMEKENVKLTQ----FSYKILIDIKGQSNDLTGMDQVVEAMKSE----GIEPD--SSTQAILAKH 206 (460)
Q Consensus 138 ~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~~~~~l~~~ 206 (460)
+...|+ +++...++.....--..+. ...+.+...+...|++++|...+++.... | .+. ..++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHH
Confidence 445666 8888888776653111121 24556667788899999999999887643 2 111 2355666778
Q ss_pred HHhCCChHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-----CCC--HHHHHHHHH
Q 012577 207 YVSGGRKEKAEAMLKEMEG----DNLK--E-HRWTCRLLLPLYAELGKADQVARIWKLCES-----NPW--LDVCMAAIE 272 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~li~ 272 (460)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+..... .+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8899999999999887654 2221 1 223445566677788999999988876533 121 223445666
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCc-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKL-STKHY-----TALLKVYADHKMLSKGKDLVKQMAESGCHIG---PLAWDALVKL 343 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 343 (460)
.+...|+.+.|.+.+.......... ....+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999998875421110 11111 1122444558899999998777554221111 1123456777
Q ss_pred HHcCCChhhHHHHHHHHHHh---CCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 344 HVEGGEVEKADSILLKAQQQ---NKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
+...|+.++|...++++... .+..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999987653 222221 2455667778889999999999999998754
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.6e-06 Score=71.90 Aligned_cols=311 Identities=12% Similarity=0.129 Sum_probs=174.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHH-HHHHHh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKI-LIDIKG 173 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~ 173 (460)
+++.+..+.+..++..|++++..-.++. +.+....+.+..+|....+ ..|...++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5556666677778888888887776663 2255556666666666665 7777777777654 454444432 245566
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK--HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 777777888877777643 33222222222 2334566667776666654322 223333444445677788888
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-------------cCHH--------HHHHHH-
Q 012577 252 ARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-------------LSTK--------HYTALL- 306 (460)
Q Consensus 252 ~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~~--------~~~~li- 306 (460)
.+-|+...+- .....|+.-+ +..+.|+++.|++...++.++|++ ||.. +-+.++
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 8777765541 1333454433 344567778888888888877764 1111 112222
Q ss_pred ------HHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 307 ------KVYADHKMLSKGKDLVKQMAE-SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 307 ------~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+.+.|+++.|.+.+..|.- .....|+.|...+.-.=. .+++.+..+-+.-+...++++| .||..++-.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~--ETFANlLll 319 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPP--ETFANLLLL 319 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCCh--HHHHHHHHH
Confidence 233456777777777666632 223446666655543322 2334444444444555555444 577777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCC
Q 012577 380 YAKRGDIHSTEKIFHRMRQVGYV-ARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~ 420 (460)
|+++.-++.|-.++.+=...-+. .+...|+ |++++.....
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT 360 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQT 360 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCC
Confidence 88877777777776644332211 1222232 4555555554
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=5e-05 Score=78.75 Aligned_cols=327 Identities=12% Similarity=0.026 Sum_probs=197.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcC--C----CCCH--HHHHHHHHHH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKEN--V----KLTQ--FSYKILIDIK 172 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~--~----~~~~--~~~~~li~~~ 172 (460)
.....|+++.+...++.+.......++.........+...++ +++...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567777777776665321111122222333334455566 77777776654421 0 1111 1222334556
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHH
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NL-KEHRWTCRLLLPLYA 243 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 243 (460)
...|+++.|...+++..+.-...+ ....+.+...+...|++++|...+++.... |. .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 789999999999998876311122 134566667778899999999999887642 11 111234556677888
Q ss_pred hcCChhHHHHHHHHhcc------CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----ccCcCHHHHHHHHHHH
Q 012577 244 ELGKADQVARIWKLCES------NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT----WKKLSTKHYTALLKVY 309 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~------~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~ 309 (460)
..|+++.|...+++... .+ ....+..+...+...|++++|...+.+.... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876433 11 1223445566677789999999999887543 1111233455566778
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHH--H--HHHHHHHHcCCChhhHHHHHHHHHHhCCCCc--CHHHHHHHHHHHH
Q 012577 310 ADHKMLSKGKDLVKQMAESG--CHIGPLA--W--DALVKLHVEGGEVEKADSILLKAQQQNKFKP--MFSSYMLIMDQYA 381 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~--~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 381 (460)
...|++++|...+....... ....... . ...+..+...|+.+.|.+++..........+ ....+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875421 1111111 0 1122444568899999998876533111111 0111345677888
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCC--chhhhHHH
Q 012577 382 KRGDIHSTEKIFHRMRQV----GYVA-RFKQFQTLVQAYINAKT--PAYGIRDR 428 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~--~~~~~~~~ 428 (460)
..|+.++|...+++.... |..+ ...++..+..++...|+ .+...+.+
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999988753 3232 23467777788888898 44444433
No 94
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=4.7e-09 Score=57.91 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 157 NVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555544444
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=6.6e-09 Score=57.30 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 191 EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 191 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
+|+.||..||++||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.1e-06 Score=79.56 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=180.3
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
-+.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+++..+.+.. +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4578899999999999998875 557899999999999999999999999999987654 66788888889999999999
Q ss_pred HHHHHHHhcc-CCCHHHHHHHH---------HHHHccCCHHHHHHHHHHHH-hcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 251 VARIWKLCES-NPWLDVCMAAI---------EAWGKLNKVEEAEAVFKRMS-KTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 251 a~~~~~~~~~-~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
|..+++.... +|. ..|.... ..+.....+....++|-++. ..+..+|+.....|.-.|--.|.+++|.
T Consensus 372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998886533 211 0000000 11222223444555555554 4444478888899999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+.|+.++... +-|..+||.|.-.++...+.++|+..|.++.+. .|+. .....|.-.|...|.+++|.+.|-..+.
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998864 557889999999999999999999999998764 4542 3445567788999999999988876653
Q ss_pred ---c------CCCccHHHHHHHHHHHHhcCC
Q 012577 399 ---V------GYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 399 ---~------~~~~~~~~~~~l~~~~~~~g~ 420 (460)
. +..++...|.+|=.++.-.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 2 112244678877777776665
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.0001 Score=71.55 Aligned_cols=273 Identities=10% Similarity=0.035 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcccchhHHHHHHHHHhccc-CCCChhhhHHHHHHHHHhhCHHHHHHHHH
Q 012577 8 IHSTLTKYAEEGND--LSRAEIALAMANLRTRRMYGKALQLSEWLETNKK-LDFIERDYASCLDLIAKLRGLQKAESYIQ 84 (460)
Q Consensus 8 ~~~~l~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (460)
-.+.++..++.+.+ -+|+.+...++++-..+-+.+-+++++.+.-.+. +.-+....+.++-. +-.-+.....++.+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHH
Confidence 34566666665543 4678888888888888888888888887764431 11122222323322 22334455555665
Q ss_pred hcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHH
Q 012577 85 KIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (460)
++..- |. ..+.......+-+++|..+|++.-- +....+.|+.--... +.|.+.-+.. -....
T Consensus 1045 rLdny--Da---~~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~i~~l--dRA~efAe~~------n~p~v 1106 (1666)
T KOG0985|consen 1045 RLDNY--DA---PDIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIENIGSL--DRAYEFAERC------NEPAV 1106 (1666)
T ss_pred HhccC--Cc---hhHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHHhhhH--HHHHHHHHhh------CChHH
Confidence 55432 11 1123345556677888888876432 344445554422211 2333322221 23356
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|..+..+-.+.|.+.+|++-|-+ .-|+..|..++....+.|.+++-.+++.-..+..-.|... +.|+-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 77788888888888777766643 2356677788888888888888888877666665555433 467778888
Q ss_pred cCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 245 LGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
.+++.+..++. ..|+......+.+-|...+.++.|.-+|.. ..-|..|...+...|.+..|.+
T Consensus 1179 t~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1179 TNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 88777665543 345555555566666666666666655542 2334555555555555555444
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=7.6e-05 Score=63.56 Aligned_cols=313 Identities=12% Similarity=0.034 Sum_probs=189.8
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHH-HHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVY-RTLLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ll~~~~ 104 (460)
.-..+-..+..+|++..|+.-|....+.+ |.+-.++-.-...|...|+-..|+.-+..+.+..||-..- -.-...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 34445566777788888888887766543 2222333334455667777777777777766655653322 22334567
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHH
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (460)
++|.+++|..=|+..++.. |+..+- ..++.+.- ..+++ ......+..+...||...|+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~------~~~e~---------~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLA------LIQEH---------WVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHH------hHHHH---------HHHHHHHHHHhcCCchhhHHHH
Confidence 8888888888888887763 221111 11111100 00000 1122334456678899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC
Q 012577 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW 263 (460)
Q Consensus 185 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~ 263 (460)
...+.+.. +-|...|..-..+|...|.+.+|+.-++..-+..-. +..++--+-..+...|+.+.++...+++.+ +|+
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 98888764 457778888888899999999998877776654332 445555677788888998888888887766 665
Q ss_pred HHHHHH-----------H--HHHHHccCCHHHHHHHHHHHHhcccCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 264 LDVCMA-----------A--IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH---YTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 264 ~~~~~~-----------l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
-..+-. + +......+++.++++-.+...+..+...... +..+-.++...+++.+|+....+..+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 442211 1 1223344566666666666555443322222 33344555566777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
-. +.|+.++.--..+|.-..+++.|+.=|+.+.+.
T Consensus 336 ~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 ID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 42 233666666666776667777777777766543
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.75 E-value=0.00015 Score=65.59 Aligned_cols=407 Identities=12% Similarity=0.082 Sum_probs=244.7
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT 98 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (460)
..|.+...+..+++.+..+ .++++.+.++++... +|.++..+..-|..-...++++..+++|.+-....-+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 4567888999999988777 899999999998876 5777888999999999999999999999986655567888888
Q ss_pred HHHHHHc-CCCHH----HHHHHHHHH-HhCCCCCC-hhhhHHHHHHHHh---cC------c-hHHHHHHHHHHHcCCCCC
Q 012577 99 LLANCVA-GNNVK----KAEEVFNRM-KDKGFPVT-SFACNQLLILYKR---LD------K-KKVADVLLLMEKENVKLT 161 (460)
Q Consensus 99 ll~~~~~-~~~~~----~a~~~~~~m-~~~g~~~~-~~~~~~ll~~~~~---~~------~-~~a~~~~~~~~~~~~~~~ 161 (460)
.|..-.+ .|+.. ...+.|+-. .+.|+.+- -..|+..+..+.. .| + +...++++++....+.-=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7765433 23322 233344433 34454332 2234444443221 11 2 455567777665322111
Q ss_pred HHHHHH------HHHH-------HhhcCChhHHHHHHHHHHh--CCCCCCH---------------HHHHHHHHHHHhCC
Q 012577 162 QFSYKI------LIDI-------KGQSNDLTGMDQVVEAMKS--EGIEPDS---------------STQAILAKHYVSGG 211 (460)
Q Consensus 162 ~~~~~~------li~~-------~~~~~~~~~a~~~~~~m~~--~g~~~~~---------------~~~~~l~~~~~~~~ 211 (460)
...|+- =|+. --+...+..|.++++++.. .|..-.. ..|-.+|..=-.++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 112211 1111 1234456777777777653 2322111 12444443221111
Q ss_pred Ch--------HHHHHHHHHH-HhCCCCCCHHHH-----HHHHHHHHhcCChhHH-------HHHHHHhcc---CCCHHHH
Q 012577 212 RK--------EKAEAMLKEM-EGDNLKEHRWTC-----RLLLPLYAELGKADQV-------ARIWKLCES---NPWLDVC 267 (460)
Q Consensus 212 ~~--------~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a-------~~~~~~~~~---~~~~~~~ 267 (460)
-- ....-++++. .--+..|+..-. ...-+.+...|+...| ..++++... ..+...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111122222 122333433211 1112234444554443 334433222 1122233
Q ss_pred HHHHHHH---HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 012577 268 MAAIEAW---GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI-GPLAWDALVKL 343 (460)
Q Consensus 268 ~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 343 (460)
..+.+.- ...+..+.....+++....-..--..+|..++..-.+..-+..|..+|.++.+.+..+ ++...++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 3332211 1112355666677766654322233578888998889999999999999999988777 77888888887
Q ss_pred HHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCC-
Q 012577 344 HVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR--FKQFQTLVQAYINAKT- 420 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~- 420 (460)
||. ++.+-|.++|+.-.++.|-.| ..-...+..+...|+-..|..+|++....+++|+ ...|..++.-=..-|+
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 765 788999999998887765444 4556788888999999999999999999866655 4789999999999999
Q ss_pred -chhhhHHHHHh
Q 012577 421 -PAYGIRDRMRA 431 (460)
Q Consensus 421 -~~~~~~~~m~~ 431 (460)
.+.++-+++..
T Consensus 489 ~si~~lekR~~~ 500 (656)
T KOG1914|consen 489 NSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHH
Confidence 45555555443
No 100
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=2.3e-05 Score=69.16 Aligned_cols=221 Identities=7% Similarity=-0.052 Sum_probs=115.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
++..+-..+...++.++|+.+.+++++.+ +-+..+|+.--.++...+. +++...++.+.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44555555666777788888888777753 1133344444444444442 56666666666553 34444555544444
Q ss_pred hhcCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 173 GQSNDL--TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 173 ~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+.|+. ++++.+++++.+.. +-|..+|+....++...|+++++++.++++++.++. +..+|+.....+.+.+....
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 445542 55666666666554 455666666666666666777777777777666544 34445444433332211000
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 012577 251 VARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH----KMLSKGKDLVKQMA 326 (460)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~ 326 (460)
.....++.++...+++...+. |...|+.+...+... +...+|.+++.+..
T Consensus 195 -------------------------~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 195 -------------------------LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred -------------------------ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 000122344444444444332 455555555555542 23344555555554
Q ss_pred HcCCCCCHHHHHHHHHHHHc
Q 012577 327 ESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 327 ~~~~~~~~~~~~~li~~~~~ 346 (460)
..+ +.+......|+..|+.
T Consensus 249 ~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 249 SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccc-CCcHHHHHHHHHHHHh
Confidence 432 3345555556665554
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=8.4e-06 Score=80.16 Aligned_cols=253 Identities=14% Similarity=0.093 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD-SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .+ +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL---------------I 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh---------------h
Confidence 4567888899998999999999999877665 344 33444444466777776665554 22 2
Q ss_pred HHHHhcCChhHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
.......++..+..+...+..-+ +...+..+..+|-+.|+.++|..+++++++..+. |+.+.|.+...|... ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 22222333333333333333322 3336677788888888888888888888887644 778888888888888 88888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-----HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVK-----LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
..++......-+ +..-|+.+.. +.....+++.-.++.+.+....+..--+.++-.+...|...++++++..++
T Consensus 169 ~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 888777765411 1111111111 011233444555555555444444444556677778888999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcC
Q 012577 394 HRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPN 437 (460)
Q Consensus 394 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~ 437 (460)
+.+.+.. +-|.....-++.+|...=.....+-+.++-.|+.-+
T Consensus 247 K~iL~~~-~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 247 KKILEHD-NKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHhcC-CcchhhHHHHHHHHHHHccCcchHHHHHHHhccccC
Confidence 9999986 668888999999988332222223344555566554
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=3.7e-06 Score=68.89 Aligned_cols=156 Identities=11% Similarity=0.102 Sum_probs=104.3
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
-.|...|+++.+....+.+..... .+...++.+++...++...+.++. |...|..+...|...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 356666666665444333221110 112245567777777777766544 7778888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HHcCCC--hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKL-HVEGGE--VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
..++...+.. +.+...+..+..+ +...|+ .++|.+++++..+.++- +...+..+...+.+.|++++|+..|+++
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN--EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887764 4467777777775 356666 48888888888776543 4456777777888888888888888888
Q ss_pred HHcCCCccHHHHH
Q 012577 397 RQVGYVARFKQFQ 409 (460)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (460)
.+.. +|+..-+.
T Consensus 171 L~l~-~~~~~r~~ 182 (198)
T PRK10370 171 LDLN-SPRVNRTQ 182 (198)
T ss_pred HhhC-CCCccHHH
Confidence 8775 66554443
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=7.8e-05 Score=63.50 Aligned_cols=297 Identities=9% Similarity=0.006 Sum_probs=190.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH---HHHhcCc-hHHHHHHHHHHHcCCCCCHHHH-HHHHHHHh
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI---LYKRLDK-KKVADVLLLMEKENVKLTQFSY-KILIDIKG 173 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~---~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~ 173 (460)
+...+...|++..|+.-|...++- |+..|.++.+ .|...|. ..|..-+....+. +||-..- ..-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 444555556666666666665553 3444444433 3444444 3344444444432 4543221 11234567
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH----HH------------HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDS----ST------------QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRL 237 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~----~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (460)
+.|.++.|..=|+...+.. |+. .. ....+..+...|+...|+.+...+++..+ .|...+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~ 194 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQA 194 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHH
Confidence 7888888888888877663 211 11 12233445668999999999999988643 46777778
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH----HHHHH------
Q 012577 238 LLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK----HYTAL------ 305 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l------ 305 (460)
-..+|...|++..|+.=++.... ..+..++--+-..+...|+.+.++...++.++.+ ||.. .|..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHH
Confidence 88999999999999887776554 3455566666777788899999999888888743 4432 12211
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHH
Q 012577 306 ---LKVYADHKMLSKGKDLVKQMAESGCHIGP---LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMD 378 (460)
Q Consensus 306 ---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 378 (460)
+......++|.++.+-.+...+..-.... ..+..+-.++...|++.+|++...++... .|+ +.++.--..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~---d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI---DPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc---CchHHHHHHHHHH
Confidence 12234567777777777777665322122 33445566677788999999999888753 344 777877788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQT 410 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 410 (460)
+|.-...+++|+.=|+...+.+ +.|...-..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n-~sn~~~reG 380 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN-ESNTRAREG 380 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 8998999999999999999876 444444333
No 104
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=5.2e-05 Score=66.93 Aligned_cols=212 Identities=8% Similarity=-0.007 Sum_probs=124.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+..+-..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.+.+ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3344444556677778888888877664 334556666555566666 567888888877776554 3345555544455
Q ss_pred hcCCh--hHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc---CCH-
Q 012577 244 ELGKA--DQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH---KML- 315 (460)
Q Consensus 244 ~~~~~--~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~- 315 (460)
+.|+. +.+..+++.+.. +| +..+|+...-.+.+.|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 55542 455556654443 33 4556666666666677777777777777776655 556666655554443 222
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012577 316 ---SKGKDLVKQMAESGCHIGPLAWDALVKLHVEG----GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382 (460)
Q Consensus 316 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (460)
++...+...++... +-|...|+.+...+... +...+|.+.+.+..... ..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 34556665665542 44666777666666652 23345666666654321 2334555666666654
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=3.7e-05 Score=71.93 Aligned_cols=217 Identities=16% Similarity=0.219 Sum_probs=138.3
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
+.+......|.+|+.+++.+.++. .-...|..+...|+..|+++.|.++|-+.- .++..+.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 445566778888888888888763 334456777888889999999988886531 345677888999999
Q ss_pred hHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 249 DQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 249 ~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+.|.++-+++.... ....|.+-..-+-+.|++.+|.++|-.+.. |+ ..|..|-+.|..+..+++...-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 99988888776543 344566666667777888888877754332 33 246677777777777766554321
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQ 407 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 407 (460)
..-..|...+..-|-..|++..|.+-|-+.. -|..-++.|...+.|++|-++-+ ..| ..|..-
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriak---teg-g~n~~k 941 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAK---TEG-GANAEK 941 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHh---ccc-cccHHH
Confidence 1123456666677777788888877665441 23344455666666666655543 333 334444
Q ss_pred HHHHHHHHHhcCCch
Q 012577 408 FQTLVQAYINAKTPA 422 (460)
Q Consensus 408 ~~~l~~~~~~~g~~~ 422 (460)
....+.+-.-.|+.+
T Consensus 942 ~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHHHHHhhCcHHH
Confidence 444444444444433
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=8.8e-06 Score=75.87 Aligned_cols=208 Identities=15% Similarity=0.064 Sum_probs=97.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSND 177 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (460)
+...+...|-...|..+|++ ...|..++.+|...|+ .+|..+..+..+. +||...|..+.+.....--
T Consensus 404 laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 33444555555555555543 2345555555555554 4444444444431 4555555555555444444
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+++|.++.+..... +-..+.....+.++++++.+-|+.-.+... ....+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 55555555443221 111111112234555555555554433221 1223444444555555555555555554
Q ss_pred hcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 258 CES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 326 (460)
... .| +...||++-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.++.|++.+.++.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 433 33 23345555555555555555555555555544 2244444445555555555555555555543
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=3.6e-06 Score=83.74 Aligned_cols=204 Identities=14% Similarity=0.123 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhccC-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHH
Q 012577 231 HRWTCRLLLPLYAELGKADQVARIWKLCESN-------PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYT 303 (460)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 303 (460)
+...|-..|....+.++.+.|.++.++.... .....|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888999999999999999987652 233478888888888888899999999998852 1346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR 383 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (460)
.|...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-+.|.+++.++++.-+-.-........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999986 567789999999999999999999999999987543222344555666777889
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCH
Q 012577 384 GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 384 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~ 438 (460)
|+.+.+..+|+...... |-....|+.+++.-.++|+ .+..+|++....++.|-.
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 99999999999998864 6677899999999999998 688999999999988765
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=9.1e-05 Score=60.90 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN 227 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (460)
++.+.+......-+......-...|+..|++++|++...... ..+ ....=...+.+..+++-|.+.+++|.+.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444443333332333333445666666666666655411 112 22222233445555666666666665432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHH
Q 012577 228 LKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307 (460)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 307 (460)
+..|.+.|..++. ......+.+.+|.-+|++|.++ ..|++.+.+....
T Consensus 168 ---ed~tLtQLA~awv----------------------------~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av 215 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWV----------------------------KLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAV 215 (299)
T ss_pred ---hHHHHHHHHHHHH----------------------------HHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHH
Confidence 2344444443332 2222234567777777777764 4567777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHH
Q 012577 308 VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK-ADSILLKAQ 361 (460)
Q Consensus 308 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~ 361 (460)
++...|++++|..++++..... .-++.+...++..-...|...+ ..+.+.++.
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777778888887777777764 3455665555555555554433 344444443
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=4.4e-06 Score=75.72 Aligned_cols=125 Identities=11% Similarity=-0.002 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC-HHHHHHHH
Q 012577 230 EHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS-TKHYTALL 306 (460)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li 306 (460)
+|+.+...|.-.|.-.|++++|.+.|+.... +| |...||.|...++...+.++|+..|++.++. +|+ +.+...|.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 4444555555555555556666655554433 33 3445666666666666666666666666653 222 23344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH---c------CCCCCHHHHHHHHHHHHcCCChhhHHHH
Q 012577 307 KVYADHKMLSKGKDLVKQMAE---S------GCHIGPLAWDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 307 ~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (460)
-.|...|.+++|.+.|-..+. . +..++..+|..|=.++.-.++.|.+.+.
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 556666666666655544332 1 1122345555555555555555544443
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=1.1e-05 Score=68.82 Aligned_cols=195 Identities=13% Similarity=-0.000 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR--WTC 235 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 235 (460)
....+-.+...+...|+++.|...|+++.... +.+ ..++..+..++.+.|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44556667777888888888888888877653 222 245667777888888888888888888765432111 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH
Q 012577 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML 315 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 315 (460)
..+..++... +...+...|+.++|.+.|+.+....+. +...+..+..... .
T Consensus 111 ~~~g~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~ 161 (235)
T TIGR03302 111 YLRGLSNYNQ------------------------IDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----L 161 (235)
T ss_pred HHHHHHHHHh------------------------cccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----H
Confidence 3333333222 000111224556666666666554322 1112211111000 0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
.. .. ......+...+.+.|++++|...++.+.+..+-.| ....+..+..++.+.|++++|..+++
T Consensus 162 ~~------~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 162 RN------RL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HH------HH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 00 00011344456667777777777777666543323 23566667777777777777777766
Q ss_pred HHHHc
Q 012577 395 RMRQV 399 (460)
Q Consensus 395 ~m~~~ 399 (460)
.+...
T Consensus 228 ~l~~~ 232 (235)
T TIGR03302 228 VLGAN 232 (235)
T ss_pred HHHhh
Confidence 66543
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=6.2e-05 Score=61.83 Aligned_cols=256 Identities=10% Similarity=0.061 Sum_probs=155.8
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
++-+.-.|++..++..-...... +-+...-..+-++|...|++..... ++.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 44455567777666655554432 2334444445566776676554332 222222 33334444444444444444
Q ss_pred hHHHHH-HHHhccC--CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 249 DQVARI-WKLCESN--PWL-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 249 ~~a~~~-~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+....- .+.+... .+. .....-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332 2333221 111 222223456788899999988887621 334444445666777888889999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 325 MAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|.+-. +..|.+.|..++.+ .+.+.+|.-+|+++.++ ..|+..+.+....++...|++++|..+++......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88742 56677766666554 45688899999998664 45777888888888999999999999999998876
Q ss_pred CCccHHHHHHHHHHHHhcCCc---hhhhHHHHHhCCCCcCHHHHHHH
Q 012577 401 YVARFKQFQTLVQAYINAKTP---AYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~g~~---~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
..++.+...++.+-...|+. ....+.+.+. ..|+.....-+
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHPFVKHL 281 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcchHHHHH
Confidence 55778888888888888875 3334444443 34555444433
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=3.6e-06 Score=78.34 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=180.2
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
.-..+...+...|-..+|..+|++.. .|.-++.+|+..|+..+|..+..+-.+ -+||+..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 34456778888999999999998765 567788899999999999999988877 3678889999988888
Q ss_pred hcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 244 ELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+..+- ...+|-.+..+..+.+++..|.+.|.
T Consensus 469 d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred ChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 887888898888764322 1122222334478999999999977765432 66788888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY-V 402 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~ 402 (460)
.-.... +-+...||.+-.+|.+.++-.+|...+.++.+-+ .-+...|...+-...+.|.+++|++.+.++..... .
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 887752 4467899999999999999999999999997754 33345777788888999999999999998875321 1
Q ss_pred ccHHHHHHHHHHHHh
Q 012577 403 ARFKQFQTLVQAYIN 417 (460)
Q Consensus 403 ~~~~~~~~l~~~~~~ 417 (460)
-|..+...++....+
T Consensus 621 ~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 621 KDDEVLLIIVRTVLE 635 (777)
T ss_pred ccchhhHHHHHHHHh
Confidence 255555555555443
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=7.8e-06 Score=69.83 Aligned_cols=145 Identities=15% Similarity=0.073 Sum_probs=80.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCH--HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST--KHYTALLKVYAD--------HKMLSKGKDLVKQMAESGCHIGPLA 336 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~ 336 (460)
+..+..++...|++++|...++.+.+..+.... .++..+..++.. .|++++|.+.++.+.+.. +-+...
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 151 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYA 151 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhH
Confidence 344445555555555555555555543321111 123333333333 266778888888877652 222222
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG--YVARFKQFQTLVQA 414 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~ 414 (460)
+..+..... . .... . .....+...+.+.|++++|...+++..+.. -+.....+..+..+
T Consensus 152 ~~a~~~~~~----~------~~~~-~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 152 PDAKKRMDY----L------RNRL-A--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred HHHHHHHHH----H------HHHH-H--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 222211100 0 0000 0 011245667899999999999999998763 12345789999999
Q ss_pred HHhcCC--chhhhHHHHHh
Q 012577 415 YINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 415 ~~~~g~--~~~~~~~~m~~ 431 (460)
+.+.|+ .+..+++.+..
T Consensus 213 ~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 999999 45555555443
No 114
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00032 Score=64.24 Aligned_cols=284 Identities=11% Similarity=0.098 Sum_probs=142.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCC-------------CCCChhh-hHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH-
Q 012577 101 ANCVAGNNVKKAEEVFNRMKDKG-------------FPVTSFA-CNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS- 164 (460)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~g-------------~~~~~~~-~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~- 164 (460)
..++..|++.+|+++++...+.+ +.-+..+ --.+...+-..|+ .+|..++....+.. ++|...
T Consensus 183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~ 261 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSL 261 (652)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHH
Confidence 34667899999999998873221 0001111 1223335556677 88999898888875 455432
Q ss_pred ---HHHHHHHHhhcCChh-HHHHHHHHHHh-----------CCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 165 ---YKILIDIKGQSNDLT-GMDQVVEAMKS-----------EGIEPDSSTQA-ILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 165 ---~~~li~~~~~~~~~~-~a~~~~~~m~~-----------~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
-|.|+..-....-++ .++..++.... .. .......| .++..|. +.-+.+.++..... +.
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~ 336 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLP--GM 336 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--cc
Confidence 233332211111111 11222211111 00 11112222 2333332 33344444333322 22
Q ss_pred CCCHHHHHHHHHHHHh--cCChhHHHHHHHHhcc-CCC--HHHHHHHHHHHHccCCHHHHHHHHH--------HHHhccc
Q 012577 229 KEHRWTCRLLLPLYAE--LGKADQVARIWKLCES-NPW--LDVCMAAIEAWGKLNKVEEAEAVFK--------RMSKTWK 295 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~ 295 (460)
.|. ..+..++..+.+ ......+..++..... .|. ..+...++......|+++.|.+++. .+.+.+.
T Consensus 337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 337 SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 222 333344333322 2235555555555443 332 2344555666777788888888777 4444443
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH----HHHHHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 296 KLSTKHYTALLKVYADHKMLSKGKDLVKQMAES--GCHIGPLAWDA----LVKLHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 296 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
.| .+...+...+.+.++-+.|..++.+.... .-.+......+ +...-.+.|+-++|..+++++.+.+ .+|
T Consensus 416 ~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n--~~d 491 (652)
T KOG2376|consen 416 LP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN--PND 491 (652)
T ss_pred Ch--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC--Cch
Confidence 33 44555666666666666666666665431 11122233333 3333345678888888888877654 366
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 370 FSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
..+...++.+|++. +++.|..+-+.+
T Consensus 492 ~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 492 TDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 67777777777765 466666665544
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=7.1e-05 Score=73.87 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKL 277 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (460)
..+..+..+|-+.|+.++|..+|+++.+.++ -|+.+.|.+...|+.. ++++|.+++... +..+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------------V~~~i~~ 182 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKA------------IYRFIKK 182 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHH------------HHHHHhh
Confidence 3444455555555555555555555555442 2444455555555544 555555544432 2223333
Q ss_pred CCHHHHHHHHHHHHhccc-------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWK-------------------KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~-------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (460)
+++..+.++|..+....+ .--..++-.+-..|-..++++++..+++.+.+.. +-|.....
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~ 261 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKARE 261 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHH
Confidence 344444444444443211 1122334444445555555666666666666543 23444444
Q ss_pred HHHHHHH
Q 012577 339 ALVKLHV 345 (460)
Q Consensus 339 ~li~~~~ 345 (460)
-++.+|.
T Consensus 262 ~l~~~y~ 268 (906)
T PRK14720 262 ELIRFYK 268 (906)
T ss_pred HHHHHHH
Confidence 4444443
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=6.3e-06 Score=63.86 Aligned_cols=122 Identities=11% Similarity=-0.105 Sum_probs=84.2
Q ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 285 AVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 285 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.+++...+. ++..+..+...+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+.+.+..
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444544443 23335556777778888888888888887764 4577778888888888888888888888887654
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 365 KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
+ .+...+..+..++.+.|++++|+..|++..+.. +.+...|...-.+
T Consensus 89 p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~ 135 (144)
T PRK15359 89 A--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNA 135 (144)
T ss_pred C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3 345677777778888888888888888887754 4444445444333
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.55 E-value=4.2e-05 Score=62.78 Aligned_cols=155 Identities=13% Similarity=0.032 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccC
Q 012577 201 AILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLN 278 (460)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~ 278 (460)
..+-..+...|+-+....+........ +-|.......+....+.|++..|...+.+... .+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 444445555555555555554433221 12333444455555556666666555555443 345556666666666666
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 358 (460)
+++.|..-|.+..+..+. +...++.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666666554332 44556666666666666666666666666543 2255555556666666666666666544
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=3.9e-05 Score=62.99 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK 313 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 313 (460)
..+-..+...|+-+....+...... .| +.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3444555555555555555544332 22 33334445555666666666666666665543 236666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
+++.|..-|.+..+. .+-++...+.+...+.-.|+.+.|..++....... .-|...-..+.-.....|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666666554 23344555555555666666666666666554321 123344455555556666666666555
Q ss_pred HHH
Q 012577 394 HRM 396 (460)
Q Consensus 394 ~~m 396 (460)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 433
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.0013 Score=64.31 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 232 RWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
+..|+.+..+-.+.|...+|.+-|-+ ..|+..|..+++...+.|.+++-.+++...++....|. .=+.||-+|++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAK 1178 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHH
Confidence 35677777777777777777765543 34666777788888888888888887777766655443 34567777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 312 HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 391 (460)
.++..+..+++ ..||..-...+..-|...|.++.|.-+|... ..|..|...++..|+++.|..
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHH
Confidence 77776655543 2367777777777777777777776665533 356667777777777777765
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 392 IFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 392 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.-++. .+..||..+-.+|...++
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhh
Confidence 54432 245677777777766554
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=0.00014 Score=68.35 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=132.1
Q ss_pred HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 139 KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 139 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
..... .+|..+++.+.... .-..-|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 33344 78888888887653 334457788899999999999999986532 3456678899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 297 (460)
++-.+. .|.......|-+-..-+-..|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++..+-... .
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 887665 3445556667777777788899999988876543 2332 367788888888888777654322 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (460)
-..|...+..-|...|++..|..-|-+..+ |.+-+.+|-..+.+++|.++-
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 234566677778888888888876655432 455666677777777776664
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=0.001 Score=63.62 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=136.1
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-----------CCchhHHHHHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-----------FRGEVVYRTLLAN 102 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~ll~~ 102 (460)
+...|+-+.|.+-.+.+. +...|..+.++|.+..+++-|.-.+-.|... .++ ..-....-.
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 345577777766665543 3457888888898888888888877776542 111 111111222
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
....|.+++|..+|.+-++. ..|=..|...|. ++|.++-+.--+. --..||......+-..+|++.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 34668888888888876653 233345555666 6666554432221 1124566666667777888888
Q ss_pred HHHHHHHHh----------CC---------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 182 DQVVEAMKS----------EG---------IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 182 ~~~~~~m~~----------~g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
++.|++... .. -..|...|.-...-.-..|+.|.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 888765321 10 012233344444444456677777777665543 33455666
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (460)
+-.|+.++|-++-++ ..|...+-.+...|-..|++.+|..+|.+..
T Consensus 949 C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667777777766554 4566667777888888888888888887654
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.0004 Score=67.52 Aligned_cols=367 Identities=12% Similarity=-0.014 Sum_probs=209.6
Q ss_pred chhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHH
Q 012577 40 YGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNR 118 (460)
Q Consensus 40 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 118 (460)
...|+..|=...+.. +.-...|..+...|....+...|.+.|++.-+..+ +...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 455555554443332 22345788899999988899999999999877633 567788999999999999999998333
Q ss_pred HHhCCCCCChhhhHHHHH--HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC
Q 012577 119 MKDKGFPVTSFACNQLLI--LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP 195 (460)
Q Consensus 119 m~~~g~~~~~~~~~~ll~--~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 195 (460)
--+.. +.-...+|..-. .|...++ ..+..-|+...+.. +.|...|..+..+|..+|.+..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 22221 112223333322 3444444 66667777666654 557789999999999999999999999988765 34
Q ss_pred CH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc-------c-
Q 012577 196 DS-STQAILAKHYVSGGRKEKAEAMLKEMEGDN------LKEHRWTCRLLLPLYAELGKADQVARIWKLCE-------S- 260 (460)
Q Consensus 196 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~- 260 (460)
+. ..---....-+..|.+.+|...+....... ..--..++..+...+.-.|-..++...++.-. .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 222222234567788999988887765421 11111233333333333333333333333211 1
Q ss_pred --CCCHHHHHHHHHH-------------------HH----ccCCH---H---HHHHHHHHHHhcccCcCHHHHHHHHHHH
Q 012577 261 --NPWLDVCMAAIEA-------------------WG----KLNKV---E---EAEAVFKRMSKTWKKLSTKHYTALLKVY 309 (460)
Q Consensus 261 --~~~~~~~~~li~~-------------------~~----~~~~~---~---~a~~~~~~m~~~~~~p~~~~~~~li~~~ 309 (460)
..+...|-.+-++ +. ..+.. + -+.+.+-.-.+ ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 0111111111111 11 11111 1 11111111111 112344555555444
Q ss_pred Hh------c--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 310 AD------H--KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 310 ~~------~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
.+ . .+...|...+...++. ...+..+|+.|... ...|++.-|...|-+..... +....+|..+...+.
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEE
Confidence 43 1 2233566666666654 24567777777665 56677777777776554332 334567777777888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
+..+++.|...|.+.+... |.|...|-.........|
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHH
Confidence 8889999999999888765 545555544333333333
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=5.2e-05 Score=62.19 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVY-ADHKM--LSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
.|..+...|...|++++|...|+...+..+. +...+..+..++ ...|+ .++|..++++..+.+ +-+...+..+..
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~ 152 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHH
Confidence 3444444444444444444444444443222 333333333332 33333 244444444444432 223344444444
Q ss_pred HHHcCCChhhHHHHHHHHHH
Q 012577 343 LHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+.+.|++++|+..|+++.+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=0.00015 Score=70.75 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAI 271 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li 271 (460)
..+...+-.|.....+.|++++|..+++...+..+. +......+...+.+.+++++|....++... .|+ ......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344666666666666666666666666666654322 234445556666666666666666665544 343 33445555
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
.++.+.|++++|..+|++....+.. +..++..+...+...|+.++|...|+...+. ..+....|+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 5666666666666666666653322 3556666666666666666666666666554 2333344443
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=7.4e-06 Score=63.46 Aligned_cols=103 Identities=10% Similarity=-0.066 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYR 97 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 97 (460)
....+|+.+......+...|++++|+..|+...... |.+...+..+...+...|++++|...|+......| +...+.
T Consensus 19 al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 19 LLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVY 96 (144)
T ss_pred HHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 334566667777788888999999999999888775 56777888888999999999999999999777644 567888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~g 123 (460)
.+..++.+.|++++|...|+...+..
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888999999999999999988763
No 126
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.00014 Score=69.04 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=123.2
Q ss_pred HHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHH
Q 012577 70 IAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADV 149 (460)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~ 149 (460)
|..-|+.+.|.+-.+.+ .+..+|..+.+.|.+.++.+-|.-.+..|.... ..+.
T Consensus 738 yvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------------------gaRA 791 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------------------GARA 791 (1416)
T ss_pred EEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----------------------hHHH
Confidence 45568888888877777 456789999999999998888888887776431 1112
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 012577 150 LLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK 229 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (460)
+++..+.| + .+=.-+.-.....|.+++|..+|.+-++. ..|=..|-..|.+++|.++-+.--+..+.
T Consensus 792 lR~a~q~~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 792 LRRAQQNG---E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHhCC---c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh
Confidence 22222221 1 00011111223445555555555554422 12223344455555555544332222221
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-----------C-----------CCHHHHHHHHHHHHccCCHHHHHHHH
Q 012577 230 EHRWTCRLLLPLYAELGKADQVARIWKLCES-----------N-----------PWLDVCMAAIEAWGKLNKVEEAEAVF 287 (460)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~-----------~~~~~~~~li~~~~~~~~~~~a~~~~ 287 (460)
.||..-..-+...++.+.|++.|++... . .+...|.--...+-..|+.+.|+.+|
T Consensus 859 ---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 859 ---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 3444444444445555555554443211 1 11122222223333467777777777
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
..... |-+++...|-.|+.++|-.+-++ . -|....-.+.+.|-..|++.+|..+|-++
T Consensus 936 ~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 936 SSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhhh---------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 65443 55566666666777776665443 2 25555666777777777777777776655
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00031 Score=63.00 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD-SSTQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
++|...++.+...- +-|...+....+.+.+.++.++|.+.++++... .|+ ...+-.+..++.+.|++.+|+++++.
T Consensus 323 d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 323 DEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred chHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 44444444444331 223333333344445555555555555554444 232 33334444445555555555555544
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012577 223 MEGDNLKEHRWTCRLLLPLYAELGKADQVA 252 (460)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (460)
...... -|+..|..|..+|...|+..++.
T Consensus 400 ~~~~~p-~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 400 YLFNDP-EDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HhhcCC-CCchHHHHHHHHHHHhCchHHHH
Confidence 444322 24444555555555555444444
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0013 Score=59.82 Aligned_cols=381 Identities=11% Similarity=0.107 Sum_probs=219.6
Q ss_pred CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHH
Q 012577 57 DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL 135 (460)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 135 (460)
|.|..+|+.+|+-+... .++++++.++++....|+ ...|..-|..-.+..+++.+.++|.+.+..- .+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 66888999999988766 999999999999988775 5789999999999999999999999988763 3566677777
Q ss_pred HHHHhcCc------hHHHHHHHH-HHHcCCCCCH-HHHHHHHHH---------HhhcCChhHHHHHHHHHHhCCCCC---
Q 012577 136 ILYKRLDK------KKVADVLLL-MEKENVKLTQ-FSYKILIDI---------KGQSNDLTGMDQVVEAMKSEGIEP--- 195 (460)
Q Consensus 136 ~~~~~~~~------~~a~~~~~~-~~~~~~~~~~-~~~~~li~~---------~~~~~~~~~a~~~~~~m~~~g~~~--- 195 (460)
.--.+.+. ....+.|+- +.+.|+.+-. ..|+..+.. +....+++...++|+++...-+..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 64443332 233344443 3344544432 234444433 334456677888888887642111
Q ss_pred ---CHHHHHHHHHHH-------HhCCChHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHhcCCh
Q 012577 196 ---DSSTQAILAKHY-------VSGGRKEKAEAMLKEMEG--DNLKEHRWT---------------CRLLLPLYAELGKA 248 (460)
Q Consensus 196 ---~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~~~~ 248 (460)
|-..|..=|+.. -+...+..|.+++++... .|......+ |..+|.-= +.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCc
Confidence 112222222211 123446677777777653 232211111 11111110 00000
Q ss_pred h---------HHHHHHHHhcc----CCCHH-HHH----HHHHHHHccCC-------HHHHHHHHHHHHhcccCcCHHHHH
Q 012577 249 D---------QVARIWKLCES----NPWLD-VCM----AAIEAWGKLNK-------VEEAEAVFKRMSKTWKKLSTKHYT 303 (460)
Q Consensus 249 ~---------~a~~~~~~~~~----~~~~~-~~~----~li~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~ 303 (460)
. ...-.++.+.. .|++- -+. ..-+.+...|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111100 11110 000 11122233333 334555555444332222333444
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHH
Q 012577 304 ALLKVYADHK---MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQ 379 (460)
Q Consensus 304 ~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 379 (460)
.+.+.--..- ..+.....++++...-..--.-+|-.++..--+...+..|..+|.++.+.. ..+ ++..+++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHH
Confidence 3333222222 255666677776653222223567778888888899999999999997654 444 77778888877
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCH--HHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNK--ALAAQV 444 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~--~~~~~l 444 (460)
++. ++.+-|.++|+--.+. +..++.--...++-+...++ .+.++|++....++.|+. .+|..+
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 765 6889999999965554 24445555667777777777 789999999988777664 566665
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.0007 Score=60.83 Aligned_cols=138 Identities=17% Similarity=0.070 Sum_probs=77.1
Q ss_pred HHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 241 LYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
.+...|+++.|+..++.+.. .|+ ...+....+.+.+.|+.++|.+.++.+....+. .....-.+..+|.+.|++.+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 34455666666666665443 333 333344455666666666666666666654322 144445556666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..+++..... .+-|+..|..|.++|...|+..++.....+ .|...|+++.|...+....+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHH
Confidence 6666665554 255666666666666666666555544322 23345666666666666655
Q ss_pred c
Q 012577 399 V 399 (460)
Q Consensus 399 ~ 399 (460)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=0.00031 Score=68.69 Aligned_cols=182 Identities=8% Similarity=0.038 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 228 LKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
...+...+..|.....+.|.+++|..+++.+.+ .|+ ......+...+.+.+++++|....++.....+. +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 444577777888888888888888888887766 554 446677778888888888888888888876554 66667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
..++.+.|++++|..+|+++...+ +-+..++.++...+...|+.++|...|++..+..+ |...-|+.++ ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--~~~~~~~~~~------~~ 231 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--DGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--cchHHHHHHH------HH
Confidence 788888888888888888888743 44577888888888888888888888888876543 4444444433 23
Q ss_pred HHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHhcC
Q 012577 386 IHSTEKIFHRMRQV----GYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 386 ~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g 419 (460)
+..-...++++.-. |.+....+....|.-|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 33444555555432 33334455566666555543
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00067 Score=55.57 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=90.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH
Q 012577 238 LLPLYAELGKADQVARIWKLCES-NPWLDVCMAA-IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML 315 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 315 (460)
++-+....|+.+.|...++.+.. .|...-...+ .--+-..|++++|+++++...+.++. |.+++.--+...-..|+-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCc
Confidence 33344445555555555555433 1211111111 11123356677777777777766543 566666556666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCHHHHHHH
Q 012577 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR---GDIHSTEKI 392 (460)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 392 (460)
-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++-..|+.| ..+..+...+.-. .+.+.|.++
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~--l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP--LYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6777666666665 566777777777777777777777777777765443322 3344444443322 255667777
Q ss_pred HHHHHHcC
Q 012577 393 FHRMRQVG 400 (460)
Q Consensus 393 ~~~m~~~~ 400 (460)
|.+..+..
T Consensus 214 y~~alkl~ 221 (289)
T KOG3060|consen 214 YERALKLN 221 (289)
T ss_pred HHHHHHhC
Confidence 77777653
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=3.9e-05 Score=59.01 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
.....+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|..+++...+.. ..+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344455556666666666666666666543 3455666666666666666666666666665433 2234455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012577 380 YAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~ 399 (460)
+...|++++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66667777777777666664
No 133
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.0015 Score=59.30 Aligned_cols=102 Identities=8% Similarity=-0.095 Sum_probs=72.3
Q ss_pred HHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-hhhhHHHHHHHHhcCc-h
Q 012577 68 DLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT-SFACNQLLILYKRLDK-K 144 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~-~ 144 (460)
++....|+++.|..+|.+.... +++.+.|..-..+|+..|++++|++=-.+-++. .|+ +..|+-...++.-.|+ +
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4456678888888888876554 456777888888888888888887766665554 455 4466666666666677 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
+|...|.+-.+.. +-|...++.+.+++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 8888887776653 44566677777776
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.1e-06 Score=49.25 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS 128 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 128 (460)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999998874
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0011 Score=54.34 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccCCCchh-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPESFRGEV-VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKR 140 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 140 (460)
.|..++-+....|+.+.|..+++.+...+|.+. +-..-.--+-..|++++|.++++.+++.+ |.|..++--=+.....
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 355666777788999999999999887765432 21111122445789999999999999886 4566666655555555
Q ss_pred cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHH
Q 012577 141 LDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG---RKEKA 216 (460)
Q Consensus 141 ~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a 216 (460)
.|. .+|.+-+....+. +.-|...|.-+...|...|++++|.-+++++.-.. |.+...+..+...+.-.| +...+
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666 6677666665554 36788999999999999999999999999998663 445555556665554443 46678
Q ss_pred HHHHHHHHhCCC
Q 012577 217 EAMLKEMEGDNL 228 (460)
Q Consensus 217 ~~~~~~~~~~~~ 228 (460)
.++|.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 888888877543
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=1.9e-06 Score=47.96 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 126 (460)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.6e-06 Score=47.75 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR 404 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 404 (460)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=0.00011 Score=56.47 Aligned_cols=98 Identities=15% Similarity=0.023 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
.....+...+...|++++|.+.|+.....+.. +...+..+...+...|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34556667777788888888888887775543 66777788888888888888888888877764 55677777778888
Q ss_pred HcCCChhhHHHHHHHHHHhC
Q 012577 345 VEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~ 364 (460)
...|++++|...|+...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 88888888888888877654
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=3e-06 Score=47.12 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888877766
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.0002 Score=55.65 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=57.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR--WTCRLLL 239 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 239 (460)
|..++..+ ..++...+.+.++.+.... +.+ ....-.+...+...|++++|...|+........|.. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 3566666666666666542 222 122233445556666666666666666665422211 1222344
Q ss_pred HHHHhcCChhHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
..+...|++++|+..++.....+ ....+....+.|.+.|+.++|...|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555554432211 12233344445555555555555544
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.18 E-value=0.0031 Score=61.68 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHH
Q 012577 76 LQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLM 153 (460)
Q Consensus 76 ~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 153 (460)
...|...|-+..+..++ ...|..|...|....+...|.+.|++..+.. ..|..........|++... +.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 44444444443332232 4668888888888778888888888888764 3366777778888888877 7776663222
Q ss_pred HHcCCCCC--HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 012577 154 EKENVKLT--QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH 231 (460)
Q Consensus 154 ~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (460)
-+.. +.- ..-|-...-.|.+.++...|..-|+...+.. +.|...|..++.+|...|++..|.++|.+.... .|+
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 2111 111 1123334445778888888888888888765 567888999999999999999999999887664 333
Q ss_pred HHHHHHH--HHHHHhcCChhHHHHHHHHhc
Q 012577 232 RWTCRLL--LPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 232 ~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 259 (460)
. +|... ...-+..|.+.++...+..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 33322 234456788888888776543
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=9.9e-05 Score=66.57 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (460)
-..|+..+...++++.|..+|+++.+.. |+ ....+...+...+. .+|.+++++..+.. +.+......-.+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456666777788888888888888764 33 33345555555555 67777777666542 4455566666667777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
.++++.|+++.+++.... +-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788888888888777663 3345577778888888888888877777654
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.0002 Score=64.63 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=74.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
.+++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+. .+-+......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 344555555666666777776666653 22 3334556666666666666666666654 234555555555666666
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
++++.|.++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777776665532 2234566677777777777777776666554
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=0.00026 Score=52.98 Aligned_cols=107 Identities=9% Similarity=0.002 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGC--HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIM 377 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 377 (460)
++..++..+.+.|++++|.+.+..+.+..- +.....+..+...+.+.|+++.|...|+.+....+-.+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455666677777777777777777766421 11134555677777777888888888877766543222 134566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
.++.+.|++++|.+.++++.+.. +.+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY-PGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC-cCChhHH
Confidence 77777788888888888777764 4444433
No 145
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00013 Score=63.56 Aligned_cols=146 Identities=15% Similarity=0.211 Sum_probs=97.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD-HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
+|..++...-+.+..+.|..+|.+.++.+. .+...|......-.. .++.+.|.++|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 566677777777778888888888875432 244555555444333 56666688888888776 667778888888888
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
.+.++.+.|..+|++....-+... ....|..++..-.+.|+.+.+.++.+++.+. .|+...+..+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 888888888888888765432222 3357888888888888888888888888874 34444455555544
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.06 E-value=0.0075 Score=58.48 Aligned_cols=222 Identities=12% Similarity=0.114 Sum_probs=97.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK--HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
..+++.+|.+-..++.+. .|+... ...+. ...+.|+.++|..+++.....+.. |..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345555555555555443 233211 11112 234555566666555555444333 555555555566666666666
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC-C---------HHHHHH
Q 012577 252 ARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK-M---------LSKGKD 320 (460)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~---------~~~a~~ 320 (460)
..+|++... .|+......+-.+|.+.+.+.+-.+.=-++-+. .+-+...+-.+++.+.+.- . ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 666655433 444444444444444444443322222111111 1112333333333332210 0 122334
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 321 LVKQMAESG-CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 321 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++.+.+.+ ---+..-...-.......|.+++|++++..-....-...+...-+.-+..+...+++.+..++..++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 444444432 1111111112222334456677777766322111112223333345556666667777777776666666
Q ss_pred C
Q 012577 400 G 400 (460)
Q Consensus 400 ~ 400 (460)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 5
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00038 Score=54.14 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHH
Q 012577 144 KKVADVLLLMEKENVKLT---QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEA 218 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~ 218 (460)
..+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+ ......|...+...|++++|+.
T Consensus 28 ~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 28 AKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555542 222 12233355677788888888888888887652222 2234456677788888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 219 MLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
.++...... .....+......|...|+.++|...|+.
T Consensus 107 ~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 107 TLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 886643333 2345666777888888888888888764
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=9.9e-05 Score=66.88 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHH
Q 012577 230 EHRWTCRLLLPLYAELGKADQVARIWKLCESNPW-----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTA 304 (460)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 304 (460)
.+......+++.+....+++.+..++.+.+..|. ..|..++++.|.+.|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444555555555555556666665555544331 12345666666666666666666666666666667777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
|++.+.+.|++..|.++...|...+...+..|+.--+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777766666666666555555555555555554443
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=0.00014 Score=65.91 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDK--GFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
+......+++.+....+.+.+..++.+.... ....-..|.+++++.|...|. +.+..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444555555555555555555555433 111223334455555555554 5555555555555555555555555
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS 209 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 209 (460)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555444434444444444444433
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.99 E-value=0.00016 Score=51.15 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhhHHHHHHHHhcCc---------hHHHHHHHHHHHcCCCCCHHHHH
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMKDKGF-PVTSFACNQLLILYKRLDK---------KKVADVLLLMEKENVKLTQFSYK 166 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~---------~~a~~~~~~~~~~~~~~~~~~~~ 166 (460)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .....+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 8899999999887766543 23344555666666666666666
Q ss_pred HHHHHHh
Q 012577 167 ILIDIKG 173 (460)
Q Consensus 167 ~li~~~~ 173 (460)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6655543
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.2e-05 Score=43.43 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGF 124 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 124 (460)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988764
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.93 E-value=0.00021 Score=50.62 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 166 KILIDIKGQSNDLTGMDQVVEAMKSEGI-EPDSSTQAILAKHYVSGG--------RKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666667888888888888888888 788888888888776543 2345677888888888888888888
Q ss_pred HHHHHHHh
Q 012577 237 LLLPLYAE 244 (460)
Q Consensus 237 ~l~~~~~~ 244 (460)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.92 E-value=1.2e-05 Score=43.43 Aligned_cols=29 Identities=21% Similarity=0.325 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00028 Score=52.73 Aligned_cols=99 Identities=8% Similarity=-0.063 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccC-CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc----hhHHHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKL-DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG----EVVYRTL 99 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~l 99 (460)
..+......+.+.|++++|.+.|+.+....+- +.....+..+...+.+.|+++.|...|+.+....|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667777788889999999999888765421 112345666888888889999999999887655443 3557777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g 123 (460)
..++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788888899999999998888774
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.0002 Score=57.41 Aligned_cols=115 Identities=13% Similarity=0.197 Sum_probs=75.9
Q ss_pred HHHHHhcccCCCchhHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHH
Q 012577 80 ESYIQKIPESFRGEVVYRTLLANCVA-----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLME 154 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~ 154 (460)
...|+.......+..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+..-
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~f----------- 102 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKF----------- 102 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCc-----------
Confidence 34555554444677777777777754 46778888888889999999999999998887654321
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012577 155 KENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212 (460)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 212 (460)
.|... +.++-. -.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 103 ----vp~n~-fQ~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 103 ----VPRNF-FQAEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----ccccH-HHHHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 111111 1123445678888888888888888888888888876654
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0086 Score=52.51 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhCC----CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSILLKAQQQNK----FKPMFS-SYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+..+...+.+.|++++|.++|+++....- .+.+.. .+-..+-++...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555556666666666655543210 011111 122223344445666666666665554
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=6e-05 Score=52.28 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=59.8
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVF 116 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 116 (460)
.|+++.|+.+++.+....+..++...+-.+..++.+.|++++|..++++......+....-.+..++.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57899999999999887632223444555789999999999999999883222233344445678899999999999998
Q ss_pred HH
Q 012577 117 NR 118 (460)
Q Consensus 117 ~~ 118 (460)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.79 E-value=0.012 Score=51.68 Aligned_cols=206 Identities=13% Similarity=0.160 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSE----GIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL 238 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (460)
.|......|-..|++++|.+.|.+..+. +-+. -...|.....+|-+. ++++|+..+++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 3445556667777888877777765432 1000 012233333333222 555555555443
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhc----cc-CcCHHHHHHHHHHHHhc
Q 012577 239 LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKL-NKVEEAEAVFKRMSKT----WK-KLSTKHYTALLKVYADH 312 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~ 312 (460)
+..|...|++..|-..+.. +...|-.. |+++.|++.|++..+. +. ..-...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 3455566666666555544 35566666 7788888877776542 10 00123456677778888
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHcCCChhhHHHHHHHHHHhC-CCCcC--HHHHHHHHHHHHhc
Q 012577 313 KMLSKGKDLVKQMAESGCHI-----GP-LAWDALVKLHVEGGEVEKADSILLKAQQQN-KFKPM--FSSYMLIMDQYAKR 383 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~-----~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~ 383 (460)
|++++|.++|++....-... +. ..+-..+-++...||+..|.+.+++..... ++..+ ......|+.++-..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 88888888888876642211 12 123333445556788888888888876543 22222 23344555555331
Q ss_pred --CCHHHHHHHHHHHH
Q 012577 384 --GDIHSTEKIFHRMR 397 (460)
Q Consensus 384 --g~~~~a~~~~~~m~ 397 (460)
..+++|+.-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 23444444444433
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00043 Score=49.02 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG 384 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (460)
+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++......+ .+...+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHHH
Confidence 3344444455555555555444431 22233444444444445555555555554443221 12234444445555555
Q ss_pred CHHHHHHHHHHHHH
Q 012577 385 DIHSTEKIFHRMRQ 398 (460)
Q Consensus 385 ~~~~a~~~~~~m~~ 398 (460)
++++|...+.+..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555554443
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00059 Score=48.30 Aligned_cols=94 Identities=16% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
+..+...+...|++++|...++...+.... +...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 556677788889999999999888775432 44677778888888899999999998887764 4455677888888888
Q ss_pred CCChhhHHHHHHHHHH
Q 012577 347 GGEVEKADSILLKAQQ 362 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~ 362 (460)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8899999888887754
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=0.0001 Score=51.16 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 312 HKMLSKGKDLVKQMAESGCH-IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 390 (460)
.|+++.|..+++.+.+.... ++...+..+..+|.+.|++++|..+++. .+..+ .+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666554211 1233444456666666666666666655 22211 11223334455666666666666
Q ss_pred HHHHH
Q 012577 391 KIFHR 395 (460)
Q Consensus 391 ~~~~~ 395 (460)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.0029 Score=48.50 Aligned_cols=95 Identities=13% Similarity=-0.073 Sum_probs=57.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG 348 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (460)
.+...+...|++++|..+|+......+. +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3344455566666666666666654433 44555556666666666666666666666654 345566666666666666
Q ss_pred ChhhHHHHHHHHHHhCC
Q 012577 349 EVEKADSILLKAQQQNK 365 (460)
Q Consensus 349 ~~~~a~~~~~~~~~~~~ 365 (460)
+.+.|.+.|+..+...+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 66666666666655443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0046 Score=49.70 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555666666677777776666665432221 2456666666666777777777766666542 2244555555555
Q ss_pred HHcCCChhhHH
Q 012577 344 HVEGGEVEKAD 354 (460)
Q Consensus 344 ~~~~~~~~~a~ 354 (460)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
No 164
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.062 Score=52.49 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=107.1
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
.+.|+.++|..+++.....+ +.|..+...+-.+|.+.++.++|..+|+......|+......+..+|.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776666655443 2366667777777777777777777777777766776556666667777666665544
Q ss_pred HHHHHHhCCCCCChhhhHHHHHHHHhcCc-----------hHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCChhHHH
Q 012577 115 VFNRMKDKGFPVTSFACNQLLILYKRLDK-----------KKVADVLLLMEKEN-VKLTQFSYKILIDIKGQSNDLTGMD 182 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----------~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~ 182 (460)
+--+|-+. .+-.+..|=+++..+.+.-. .-|...++.+.+.+ ---+..-...-...+...|++++|.
T Consensus 132 aa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 44444432 34455555555555443322 12333444444332 1111111222233445566777777
Q ss_pred HHHHH-HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 183 QVVEA-MKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 183 ~~~~~-m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
+++.. ..+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 77733 33332233444445556666677777777777777776654
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.0013 Score=59.50 Aligned_cols=91 Identities=9% Similarity=-0.063 Sum_probs=55.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
..+...|++++|++.|+++++.... +...|..+..+|...|++++|...++.+++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3344556666666666666665443 45556666666666666666666666666643 335556666666666666666
Q ss_pred hHHHHHHHHHHhC
Q 012577 352 KADSILLKAQQQN 364 (460)
Q Consensus 352 ~a~~~~~~~~~~~ 364 (460)
+|...|+++.+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666665543
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=0.00022 Score=47.09 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLL 100 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll 100 (460)
.+.|++++|+++|+.+.... |.+......++.+|.+.|++++|..+++.+....|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 46788888888888887765 55777777888888888888888888888887767655555443
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.67 E-value=0.0035 Score=48.09 Aligned_cols=92 Identities=5% Similarity=-0.112 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
.-.+...+...|++++|.++|+-+.... +-+..-|-.|..++-..|++++|+..|......++ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344555667788888888887777654 44566667777777777888888888887777664 355666677777777
Q ss_pred cCChhHHHHHHHHh
Q 012577 245 LGKADQVARIWKLC 258 (460)
Q Consensus 245 ~~~~~~a~~~~~~~ 258 (460)
.|+.+.|.+.|+..
T Consensus 116 lG~~~~A~~aF~~A 129 (157)
T PRK15363 116 CDNVCYAIKALKAV 129 (157)
T ss_pred cCCHHHHHHHHHHH
Confidence 77777777777654
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.028 Score=47.84 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=36.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCH-HHH---HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDS-STQ---AILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
....+...|++++|.+.|+.+...- |+. ... -.++.++.+.+++++|...+++..+..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3444556777777777777776652 322 221 3445666777777777777777766543
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.01 Score=50.50 Aligned_cols=190 Identities=11% Similarity=0.036 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccCCCchhH----HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVV----YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
.-.....+...|++++|.+.|+.+....|.... .-.++.++.+.+++++|...|++..+....-....+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 334455566788899999999888777664322 2345677888899999999999888764332223333333333
Q ss_pred HhcCchHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 012577 139 KRLDKKKVADVLLLMEKEN-VKLTQ-------FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210 (460)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 210 (460)
+.... ....+....... ...|. ..+..+++-|-.+.-..+|...+..+... . ...--.+...|.+.
T Consensus 115 ~~~~~--~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---l-a~~e~~ia~~Y~~~ 188 (243)
T PRK10866 115 TNMAL--DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---L-AKYELSVAEYYTKR 188 (243)
T ss_pred hhhhc--chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHc
Confidence 21000 000000000000 00000 12233333333333344444433333321 0 00111344556777
Q ss_pred CChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 211 GRKEKAEAMLKEMEGD--NLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 211 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
|.+..|..-++.+.+. +.+........++.+|...|..++|......+
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777777777777654 22223344555666666666666666655443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.0031 Score=57.16 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=85.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
...+...|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..+++++...+ .+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 456677899999999999999874 55788899999999999999999999999987653 355678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 386 IHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 386 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
+++|+..|++..+.+ |+......++..|
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 999999999999864 4444444444333
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0036 Score=54.69 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHH
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL-YAELGKADQVARIWKLCES--NPWLDVCMAAIEAWG 275 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~ 275 (460)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+ ..+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 344444444444444455555544443221 112222222222 1123334444444444332 223344444455555
Q ss_pred ccCCHHHHHHHHHHHHhcccCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLS---TKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
+.|+.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+.+.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555543 1111 135555555555566666666666555553
No 172
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.55 E-value=0.00082 Score=54.04 Aligned_cols=107 Identities=12% Similarity=0.186 Sum_probs=81.1
Q ss_pred cCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHH
Q 012577 297 LSTKHYTALLKVYAD-----HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFS 371 (460)
Q Consensus 297 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 371 (460)
.+-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+.-.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 388899999998875 46777788888999999999999999999988765 3332 22333332211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchh
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAY 423 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 423 (460)
| -.+.+-|++++++|...|+.||..++..|++.+.+.+....
T Consensus 115 --------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 115 --------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred --------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHH
Confidence 1 12456789999999999999999999999999999887433
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0026 Score=50.91 Aligned_cols=61 Identities=15% Similarity=-0.059 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEP--DSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555554444331111 122444444444444555555554444443
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0062 Score=48.94 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34566677777778888888888887775432221 356777777777888888888887777765322 344455555
Q ss_pred HHHHhcCChhHHH
Q 012577 240 PLYAELGKADQVA 252 (460)
Q Consensus 240 ~~~~~~~~~~~a~ 252 (460)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 5666555544433
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.067 Score=47.40 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=79.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
+.+..+.-+...|+...|.++-.+.. + |+..-|-..+.+++..++|++..++-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34555666677788888777765543 2 6888888889999999999887776432 1 23577888899999
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+...+..
T Consensus 249 ~~~~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999988888887652 12455677888899888887655443
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.069 Score=47.48 Aligned_cols=213 Identities=10% Similarity=-0.033 Sum_probs=134.9
Q ss_pred CCHHHHHHH-HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhcccCcCHHHH----
Q 012577 230 EHRWTCRLL-LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEA--WGKLNKVEEAEAVFKRMSKTWKKLSTKHY---- 302 (460)
Q Consensus 230 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---- 302 (460)
|.-.++..+ ..++...|+.++|.+.-..+..-.....+...+++ +--.++.+.|...|++.+..++ +...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~ 243 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSAS 243 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHh
Confidence 333455444 45667788888888776655543333333444433 3346778889999988877543 32221
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-
Q 012577 303 ---------TALLKVYADHKMLSKGKDLVKQMAES---GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM- 369 (460)
Q Consensus 303 ---------~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 369 (460)
..=..-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.-.+...+.+ |.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~sy 320 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSY 320 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHH
Confidence 11122345789999999999998863 345566777777888889999999999888776532 21
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCC-chhhhHHHHHhCCCCcCHHHHHHHHHH
Q 012577 370 FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYV-ARFKQFQTLVQAYINAKT-PAYGIRDRMRADNVFPNKALAAQVAQV 447 (460)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~-~~~~~~~~m~~~~~~p~~~~~~~l~~~ 447 (460)
...|..-..++.-.++|++|.+-+++..+..-. ....++.....++-++++ .-..++..-+.....|....|..+..+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~ 400 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALV 400 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHH
Confidence 112222334555678899999999988775422 234566666666766666 455555555555556666666655444
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.014 Score=55.59 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHc--c---CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHc
Q 012577 262 PWLDVCMAAIEAWGK--L---NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK--------MLSKGKDLVKQMAES 328 (460)
Q Consensus 262 ~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~ 328 (460)
.+...|...+.+... . +....|..+|++..+..+. ....|..+..++.... +...+.+........
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 355666666655433 2 2366788888888876443 3445555444433221 122333333333332
Q ss_pred -CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 012577 329 -GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQ 407 (460)
Q Consensus 329 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 407 (460)
..+.++..|..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++....+ |...+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Confidence 133455677777666667788888888888887654 677788888888888888888888888887753 44444
Q ss_pred H
Q 012577 408 F 408 (460)
Q Consensus 408 ~ 408 (460)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.45 E-value=0.014 Score=43.17 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=47.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHH
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIG--PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYA 381 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 381 (460)
+..++-..|+.++|..+|+.....|.... ...+-.+...+...|++++|..++++.....+-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666554432 23344455556666666666666666554432100 1111122233455
Q ss_pred hcCCHHHHHHHHHHHH
Q 012577 382 KRGDIHSTEKIFHRMR 397 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~ 397 (460)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5666666666655444
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0023 Score=54.03 Aligned_cols=99 Identities=15% Similarity=0.038 Sum_probs=68.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
.-+.+.+++.+|+..|.+.++..+. |.+-|..=..+|++.|.++.|++-.+..+... +--..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456677788888888887776443 56666667778888888888877777776642 223467777778888888888
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 352 KADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
+|.+.|.+.++ +.|+-.+|-.
T Consensus 167 ~A~~aykKaLe---ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE---LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc---cCCCcHHHHH
Confidence 88888777764 4465555543
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.006 Score=48.84 Aligned_cols=62 Identities=8% Similarity=-0.124 Sum_probs=32.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL--STKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
+..+...+...|++++|...|+........| ...++..+...+...|++++|...++.....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444455555566666666665554432211 1234555555566666666666666555543
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.017 Score=55.02 Aligned_cols=141 Identities=9% Similarity=-0.033 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHhcc-CCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 012577 227 NLKEHRWTCRLLLPLYAELG-----KADQVARIWKLCES-NPWL-DVCMAAIEAWGKL--------NKVEEAEAVFKRMS 291 (460)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~-~~~~-~~~~~li~~~~~~--------~~~~~a~~~~~~m~ 291 (460)
..+.+...|...+++..... +.+.|..+|++... +|+- ..+..+..++... .+...+.+......
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34456677777777654322 25577777776655 5543 3343333222211 12233444444433
Q ss_pred hc-ccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 292 KT-WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 292 ~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
.. ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++...++..|+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32 123355778888777777899999999999999965 68889999999999999999999999999877665554
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.013 Score=49.77 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=92.5
Q ss_pred HHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhhHHHHHHHH
Q 012577 284 EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG---GEVEKADSILLKA 360 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~ 360 (460)
..-++.-...++. |...|-.|...|...|+++.|..-|....+.. ++|+..+..+..++... ....++..+|+++
T Consensus 142 ~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3334444444444 88899999999999999999999999998863 56777777777766543 3467889999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
...++ -|+.....|...+...|++.+|...|+.|.+.. +|+ ..+..+|..-
T Consensus 220 l~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie~~ 270 (287)
T COG4235 220 LALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIERS 270 (287)
T ss_pred HhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHHHH
Confidence 87664 345566667778889999999999999999875 544 3455555443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.02 Score=42.29 Aligned_cols=106 Identities=17% Similarity=0.082 Sum_probs=71.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI---GPLAWDALVKLH 344 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 344 (460)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556678889999999998888776543 3456667788888999999999999887752 21 223333344567
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
...|+.++|.+.+-.... ++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 788999999888866543 23335555555443
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.1 Score=46.26 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH 312 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 312 (460)
.+.+..+.-+...|+...|.++-+..+ -|+..-|...+.+++..+++++-.++-.. + . ++..|..++.+|.+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k--K--sPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS--K--K--SPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C--C--CCCChHHHHHHHHHC
Confidence 345556677778888888888877763 47777888889999999999877776432 1 1 457889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
|+..+|..+...+ + +..-+..|.++|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988887762 1 24567778889999988876443
No 185
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.31 E-value=0.12 Score=46.61 Aligned_cols=417 Identities=12% Similarity=0.068 Sum_probs=217.3
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT 98 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (460)
..|.+...+..+++.+..++..++..+.++++... +|.-+.++..-+.+=....++...+.+|.+-....-+...|..
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 45667788899999999999999999999888654 4666667777777666678888888888876655456777777
Q ss_pred HHHHHHcCC-----C-HHHHHHHHHHHH-hCCCCCCh-hhhHHHHHHHHh---cCc-------hHHHHHHHHHHHcCCCC
Q 012577 99 LLANCVAGN-----N-VKKAEEVFNRMK-DKGFPVTS-FACNQLLILYKR---LDK-------KKVADVLLLMEKENVKL 160 (460)
Q Consensus 99 ll~~~~~~~-----~-~~~a~~~~~~m~-~~g~~~~~-~~~~~ll~~~~~---~~~-------~~a~~~~~~~~~~~~~~ 160 (460)
.+..-.+.. + -....+.|+-.. ..++.|-. ..|+..+..+.. .+. +.....+.++..-.+.-
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 665443322 1 112223333322 23444433 334443332211 111 34445555555432111
Q ss_pred CHHHHHH------HHHH-----Hh--hcCChhHHHHHHHHHHh--CCCC----CCHHHHHH-----------HHHHHHhC
Q 012577 161 TQFSYKI------LIDI-----KG--QSNDLTGMDQVVEAMKS--EGIE----PDSSTQAI-----------LAKHYVSG 210 (460)
Q Consensus 161 ~~~~~~~------li~~-----~~--~~~~~~~a~~~~~~m~~--~g~~----~~~~~~~~-----------l~~~~~~~ 210 (460)
=...|+- =++- +. ...-+-.|.+.+++... .|.. .+..+++- .|..-...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 1111111 0000 00 01113344555554432 1211 11122221 22111111
Q ss_pred -----CC-hH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHH-----------------
Q 012577 211 -----GR-KE-KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLD----------------- 265 (460)
Q Consensus 211 -----~~-~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~----------------- 265 (460)
|+ .. ..--++++.... +......|-.--.-+...++-+.|+....+-.. .|...
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~ 353 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVY 353 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHh
Confidence 11 01 111112222111 111223333333334445555555554443221 22210
Q ss_pred -HHHHHHHHHHc---cCCHHHHHHH------HHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH
Q 012577 266 -VCMAAIEAWGK---LNKVEEAEAV------FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHIGP 334 (460)
Q Consensus 266 -~~~~li~~~~~---~~~~~~a~~~------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~ 334 (460)
+|..++..+.+ .++.+.+... ..+..-....--...|...+..-.+...++.|..+|-+..+.| +.+++
T Consensus 354 ~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 354 GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 01111111110 1111111111 1111100011134567788888888888999999999999888 67788
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR--FKQFQTLV 412 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~ 412 (460)
..+++++..++ .|+...|..+|+.-....+ .+...-...+..+.+.++-+.|..+|+..... +..+ ...|..+|
T Consensus 434 yi~~A~~E~~~-~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi 509 (660)
T COG5107 434 YIYCAFIEYYA-TGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMI 509 (660)
T ss_pred eeeHHHHHHHh-cCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH
Confidence 88898888765 4788889999987666542 22233456677788889999999999965543 1222 46888899
Q ss_pred HHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 413 QAYINAKT--PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 413 ~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
.--..-|+ .+.++-++|.. +.|...+...+
T Consensus 510 ~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF 541 (660)
T COG5107 510 EYESMVGSLNNVYSLEERFRE--LVPQENLIEVF 541 (660)
T ss_pred HHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHH
Confidence 88888888 56677777766 46776666666
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.31 E-value=0.0017 Score=42.84 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG-EVEKADSILLKA 360 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~ 360 (460)
+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33444444444444444444444444432 223334444444444444 344444444443
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.001 Score=44.00 Aligned_cols=64 Identities=16% Similarity=0.019 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEG 225 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 225 (460)
+..+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777664 445667777777777777 57777777776654
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.047 Score=45.42 Aligned_cols=129 Identities=11% Similarity=0.020 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHH-----HHH
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKI-----LID 170 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-----li~ 170 (460)
+++++++.-.|.+.-...++++.++...+.++.....|++.-.+.|+ +.|...|++..+..-..|..+.+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44444455555555566666666655545555555555555555565 444444444433221222222222 223
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.|.-.+++.+|...|.++.... .-|+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555555443 233333333333333445555566666555554
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.29 E-value=0.0012 Score=42.93 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
+...+.+.|++++|.+.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677777788888887777664 345677777777777778888877777777654
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.0014 Score=42.66 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
.+..+..++...|++++|..+|+++.
T Consensus 33 a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 33 AWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 191
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.23 E-value=0.0063 Score=45.43 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMA---------------ESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++.+...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555554444443332 12234556666666666666666666666666666666
Q ss_pred CCCcCHHHHHHHHHH
Q 012577 365 KFKPMFSSYMLIMDQ 379 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~ 379 (460)
+++.+..+|..|++-
T Consensus 83 ~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHH
Confidence 655555566655553
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.0017 Score=42.69 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.|++++|.++|+++....+- +...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443321 223333444444444444444444444444
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.019 Score=47.64 Aligned_cols=140 Identities=9% Similarity=-0.037 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC---CH-----HHHHHH
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP---WL-----DVCMAA 270 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-----~~~~~l 270 (460)
..+.+++.+.-.|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|+.+.+.. +. ....+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456666677777888888888888887767777778888888888888888888888665411 11 122233
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV 341 (460)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (460)
...|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+...|.+.++.|.+. .|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34455567777777777777766544 5555555444555567788888888888774 35554444433
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.0056 Score=51.75 Aligned_cols=93 Identities=14% Similarity=0.012 Sum_probs=52.0
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
..+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 345566666666666666553 345555666666666666666666666555554322 234555555556556666655
Q ss_pred HHHHHHhcc-CCCHHH
Q 012577 252 ARIWKLCES-NPWLDV 266 (460)
Q Consensus 252 ~~~~~~~~~-~~~~~~ 266 (460)
.+.|++... .|+-.+
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 555554433 444333
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.0097 Score=52.55 Aligned_cols=131 Identities=9% Similarity=-0.075 Sum_probs=63.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH----hcccC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCCHHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMS----KTWKK-LSTKHYTALLKVYADHKMLSKGKDLVKQMAE----SGC-HIGPLA 336 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~ 336 (460)
|-.|.+.|.-.|+++.|+..-+.-+ +.|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3444444555566666655443221 11111 1223455556666666666666665554322 111 112344
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHH----hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSILLKAQQ----QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
.-+|...|.-..++++|+.++.+-.. .....-....+.+|..+|...|..+.|+.+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666666666544221 11111223455566666666666666665555443
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.09 E-value=0.13 Score=42.65 Aligned_cols=59 Identities=19% Similarity=0.042 Sum_probs=33.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
....+...|++++|.+.|+.+...- -+--....-.++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556677777777777766541 0112344455666667777777777777766654
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.08 E-value=0.0097 Score=44.43 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHH--------------HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQ--------------QQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
|..++..++.++++.|+++....+++..- ...+..|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 46788999999999999999998887642 1235678999999999999999999999999998876
Q ss_pred -cCCCccHHHHHHHHHHHHhcCC
Q 012577 399 -VGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 399 -~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.+++.+..+|..|++=+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 5678789999999976555443
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.06 E-value=0.019 Score=50.75 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=56.7
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCC--CChhhhHHHHHHHHHhhCHHHHHHHHHh-------cccCCCchhHHHHHHH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLD--FIERDYASCLDLIAKLRGLQKAESYIQK-------IPESFRGEVVYRTLLA 101 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~ll~ 101 (460)
-..+++.|+...-+.+|+...+-+--. .-..+|+.+.++|.-.+++++|.++... +-...-...+...|.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 345899999999999999988776211 1234577778888888999999986543 1111112334445556
Q ss_pred HHHcCCCHHHHHHHH
Q 012577 102 NCVAGNNVKKAEEVF 116 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~ 116 (460)
.+--.|.+++|+-..
T Consensus 104 tlKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCC 118 (639)
T ss_pred hhhhhcccchHHHHH
Confidence 666677777776553
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.03 E-value=0.11 Score=40.93 Aligned_cols=65 Identities=12% Similarity=-0.050 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
|++..--.|..+..+.|+..+|...|++...--...|....-.+.++....+++..|...++++-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 33333333444444444444444444444332222333334444444444444444444444433
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.02 E-value=0.046 Score=51.34 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012577 129 FACNQLLILYKRLDK---KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187 (460)
Q Consensus 129 ~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (460)
-.++..-.+|.+-++ -+...-++++++.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344555556666555 233344566777776677654 34556667788888777754
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.00 E-value=0.025 Score=48.58 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=45.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcC
Q 012577 310 ADHKMLSKGKDLVKQMAESGCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRG 384 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 384 (460)
.+.|++++|...|+.+.+.- |+ ...+-.+...|...|++++|...|+.+.+.++..|. ...+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 44455566655555555531 22 234455555566666666666666665554432221 122333444455556
Q ss_pred CHHHHHHHHHHHHHc
Q 012577 385 DIHSTEKIFHRMRQV 399 (460)
Q Consensus 385 ~~~~a~~~~~~m~~~ 399 (460)
+.++|.++|+++.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655553
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.037 Score=47.22 Aligned_cols=98 Identities=8% Similarity=-0.107 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhc-Cc---hHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRL-DK---KKVADVLLLMEKENVKLTQFSYKI 167 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~---~~a~~~~~~~~~~~~~~~~~~~~~ 167 (460)
|...|-.|...|...|+++.|...|.+..+.. ++++..+..+-.++... |. .++..+|+++.... +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44555566666666666666666665555431 22333333333322221 11 44445555554442 223333444
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSE 191 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~ 191 (460)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444455555555555555555544
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.37 Score=46.13 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=118.0
Q ss_pred CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhH------------HHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 012577 57 DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVV------------YRTLLANCVAGNNVKKAEEVFNRMKDKGF 124 (460)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 124 (460)
.|.++.|..+.......-.++.|+..|-+...- +.+.. -.+=+.+ --|++++|.++|-+|-++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence 467888888888887778888888888765432 22211 1111222 24889999999888765532
Q ss_pred C----CChhhhHHHHHHHHhcCc----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHh------
Q 012577 125 P----VTSFACNQLLILYKRLDK----KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKS------ 190 (460)
Q Consensus 125 ~----~~~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------ 190 (460)
. ....-|..+...+...|. +.....|+.+-.. -.+...|......|.+.|+.+.-.+.+-.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEV 843 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHH
Confidence 1 122234444444433222 2222333333221 12333455555556666655544333322211
Q ss_pred --CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHH-
Q 012577 191 --EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVC- 267 (460)
Q Consensus 191 --~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 267 (460)
..++-+....-.+..++.+.|.-++|.+.|-+- +. | ...+..|...+++.+|.++-++..- |.+.+.
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~l-~qv~tli 913 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQL-PQVQTLI 913 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHH
Confidence 123455666667777888888888777665332 21 1 1455667777778777777665432 211111
Q ss_pred -------------HHHHHHHHccCCHHHHHHHHHHHHh
Q 012577 268 -------------MAAIEAWGKLNKVEEAEAVFKRMSK 292 (460)
Q Consensus 268 -------------~~li~~~~~~~~~~~a~~~~~~m~~ 292 (460)
.--|..+.+.|+.-+|-+++.+|.+
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1124445566666666666666654
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0047 Score=41.26 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
|.+.+++++|.+.++.+...+ +.+...+......+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444331 2233333334444444444444444444443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.032 Score=47.90 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=70.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESG--CHIGPLAWDALV 341 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li 341 (460)
.|...+..+.+.|++++|...|+.+.+..+... ...+..+...|...|++++|...|+.+.+.- .+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 355555555666888888888888887543311 2466778888888899999999988887641 112345555566
Q ss_pred HHHHcCCChhhHHHHHHHHHHhC
Q 012577 342 KLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
..+...|+.++|..+|+.+.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77778899999999999888765
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.011 Score=45.99 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
+...++..+...|++++|.++.+.+...++ .+...|..+|.+|...|+..+|.++|+++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444455555555555555554432 23445555555555555555555555544
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.22 Score=41.22 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=26.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 203 LAKHYVSGGRKEKAEAMLKEMEGDNLKE--HRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
....+...|++++|...|+.+....+.. -....-.++.++.+.|+++.|...++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344555666666666666665532211 1122334444555555555555555543
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.0082 Score=46.72 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHcCCCHHHHHHHHHHHHhC--C-CCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh
Q 012577 103 CVAGNNVKKAEEVFNRMKDK--G-FPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (460)
....++.+.+...+.++... | +-|+...+.-+ ......+..+. ..+...++..+...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~---------~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV---------EPERERLRELY-------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH---------HHHHHHHHHHH-------HHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH---------HHHHHHHHHHH-------HHHHHHHHHHHHhccCHH
Confidence 35567888888888887753 2 22221110100 11112222221 235566788888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-----DNLKEHRWTC 235 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 235 (460)
.|.++.+.+.... +.|...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 80 ~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 80 EALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 9999999998876 66888999999999999999999999988753 4888877553
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.79 E-value=0.0065 Score=40.57 Aligned_cols=58 Identities=21% Similarity=0.042 Sum_probs=45.1
Q ss_pred HHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
..|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...|+...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46777888888888888888775 45677777788888888888888888888876543
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.22 Score=39.29 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 012577 261 NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIGPLAWDA 339 (460)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 339 (460)
.|++..--.|..+....|+..+|...|++...--.-.|......+.++....+++..|...++.+.+... .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555556666666666666666666665544444555666666666666666666666666655320 002233344
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 391 (460)
+.+.+...|....|..-|+...... |+...-......+.+.|+..++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666666666666666665432 333333333334555555555443
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.66 E-value=0.46 Score=42.75 Aligned_cols=162 Identities=14% Similarity=0.099 Sum_probs=86.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCHH------HHHHHHHHHHc---cCCHHHHHHHHHHHHhcccCcCHHHHHHHHH
Q 012577 237 LLLPLYAELGKADQVARIWKLCESNPWLD------VCMAAIEAWGK---LNKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 307 (460)
.++-+|....+++...++.+.+...|+.. .-....-++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666666666666666655543221 11123344445 6777778877777655555667777777766
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-hh---hHHHHH---HHHHHhCCC---Cc
Q 012577 308 VYAD---------HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGE-VE---KADSIL---LKAQQQNKF---KP 368 (460)
Q Consensus 308 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~---~a~~~~---~~~~~~~~~---~~ 368 (460)
.|-. ....++|...|.+.-+. .||...--.++..+...|. .+ +..++- ..+..+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 6532 12356666666665543 2443322222222222332 22 222222 111111222 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 369 MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
+--.+.+++.+..-.|+.++|.+..++|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33445678888888899999999999988764
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.63 E-value=0.45 Score=42.25 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=169.2
Q ss_pred HhhCHHHHHHHHHhcccC-CCchhHHHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCChhhhHH----HHHHHHhcCc-
Q 012577 72 KLRGLQKAESYIQKIPES-FRGEVVYRTLLAN--CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQ----LLILYKRLDK- 143 (460)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~----ll~~~~~~~~- 143 (460)
-.|+-..|.+.-.+..+. .-|....-.++.+ -.-.|+++.|.+-|+.|... +.+--. |.-...+.|.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccH
Confidence 457778888877665432 2344444444433 34579999999999999874 333222 2222334555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCCHH--HHHHHHHHHH---hCCChHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPDSS--TQAILAKHYV---SGGRKEKAE 217 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~--~~~~l~~~~~---~~~~~~~a~ 217 (460)
+.|.++-+..-..- +--...+...+...+..|||+.|+++++.-... -+.++.. .-..|+.+-. -.-+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 55555555444331 333467888999999999999999999887654 3345432 2223333222 123455666
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-c
Q 012577 218 AMLKEMEGDNLKEHRW-TCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-W 294 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~ 294 (460)
..-.+..+ +.||-. .-..-..++.+.|+..++-.+++.+-+ .|....+... .+.+.|+. ++.-++...+. .
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHh
Confidence 55555443 344432 222345778899999999999987655 5555543322 23444543 33333322211 1
Q ss_pred cCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCChhhHHHHHHHHHH
Q 012577 295 KKL-STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV-EGGEVEKADSILLKAQQ 362 (460)
Q Consensus 295 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 362 (460)
.+| +..+...+..+-...|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222 5566777788888899998888777766653 577888877777654 45999999999888765
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.78 Score=44.40 Aligned_cols=338 Identities=13% Similarity=0.121 Sum_probs=184.3
Q ss_pred CCCCCHHHHH-----HHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC---HHHHHHHHHhcccCC
Q 012577 19 GNDLSRAEIA-----LAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG---LQKAESYIQKIPESF 90 (460)
Q Consensus 19 ~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~ 90 (460)
|.+++.+.|. .++..+...+.+..|+++-.++.... ......|.....-+.+..+ -+-+..+-+++....
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 7788777665 45777888899999999998876432 1125677777777766633 222333333343322
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC----CChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHH
Q 012577 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP----VTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSY 165 (460)
Q Consensus 91 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~ 165 (460)
..-.+|..+.+..-..|+++-|..+++.=...+.. .+..-+...+.-+...|+ +-...++-.+... .+...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34456777777777889999998887642221100 011122222333333333 2222222222221 001111
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH--HHH----HhCCCCCCHHHHHHHH
Q 012577 166 KILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAML--KEM----EGDNLKEHRWTCRLLL 239 (460)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~----~~~~~~~~~~~~~~l~ 239 (460)
+....+...|..+|.+..++ .|..+ +-..|-...+. ++..-| +.. ...+..|+ .....
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~---~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRH---QDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHh---hchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 11122344455666554432 11111 11122222222 222221 110 01222232 23344
Q ss_pred HHHHhcCChhHH----------HHHHHHhccC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 240 PLYAELGKADQV----------ARIWKLCESN----PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 240 ~~~~~~~~~~~a----------~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
..+.+.....-. +.+.+.+... -...+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHH
Confidence 444444331111 1222222221 1122445556667778999999888776553 688888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+.+++..+++++-+++-+... .+.-|.-++.+|.+.|+.++|.+++.+.. |. + -...+|.+.|+
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-~------ekv~ay~~~~~ 785 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-Q------EKVKAYLRVGD 785 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-H------HHHHHHHHhcc
Confidence 999999999988777655432 25567789999999999999999987652 21 1 56778999999
Q ss_pred HHHHHHHHHHHH
Q 012577 386 IHSTEKIFHRMR 397 (460)
Q Consensus 386 ~~~a~~~~~~m~ 397 (460)
+.+|.+.--+-+
T Consensus 786 ~~eAad~A~~~r 797 (829)
T KOG2280|consen 786 VKEAADLAAEHR 797 (829)
T ss_pred HHHHHHHHHHhc
Confidence 999988765443
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.59 E-value=0.54 Score=42.60 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH-hccCCCHHHH-HHHHHH
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-LKEHRWTCRLLLPLYAELGKADQVARIWKL-CESNPWLDVC-MAAIEA 273 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~-~~li~~ 273 (460)
..+|..+++...+..-.+.|..+|-++.+.+ +.++.+.+++++..++ .|+..-|..+|+. +...||...| +-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3455555555555555666666666665555 3455555555555443 4455555555552 3334444433 233444
Q ss_pred HHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 274 WGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
+...++-..|..+|+....+ +..+ ...|..+|..-..-|++..+..+=+.|.+. -|...+...+...|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 45556666666666644332 1112 345666666666666666666665555553 344444444444443
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.55 E-value=0.014 Score=39.50 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhC---C-CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQN---K-FKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+++.+...|...|++++|+..|++..+.. | -.|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666654321 1 1121 34556666667777777777777666543
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.52 E-value=0.051 Score=42.09 Aligned_cols=93 Identities=9% Similarity=-0.143 Sum_probs=67.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
.--+...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 334567889999999998887665 45566677777778888889999888887665443 2333444677888888888
Q ss_pred hHHHHHHHHhccCCC
Q 012577 249 DQVARIWKLCESNPW 263 (460)
Q Consensus 249 ~~a~~~~~~~~~~~~ 263 (460)
+.|...|+.....|.
T Consensus 122 ~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 122 AKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHhCcc
Confidence 888888887766543
No 217
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.52 E-value=0.027 Score=47.25 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=77.9
Q ss_pred HHHHHHhcccCCCchhHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHH
Q 012577 79 AESYIQKIPESFRGEVVYRTLLANCVA-----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLM 153 (460)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~ 153 (460)
.+..|.......++..+|-+.+..+.. .+.++-....++.|.+-|+..|..+|+.|+..+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf---------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF---------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------
Confidence 345566666545677777777776653 35677777788889999999999999998887654431
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 012577 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
.|... +....-.|-+ +-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 123 -----iP~nv-fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 123 -----IPQNV-FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -----ccHHH-HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22211 1111111221 2234678888888888888888888888888777654
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.81 Score=43.53 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSK 292 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (460)
+...+..-+.+...+..|-++|..+... ..+++.....+++.+|..+-+...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcc
Confidence 3333444444455556666666655321 2345556666677777666655444
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.59 Score=44.31 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccC--CCc------hhHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChh
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPES--FRG------EVVYRTLLANCVA----GNNVKKAEEVFNRMKDKGFPVTSF 129 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~------~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~ 129 (460)
....++...+-.|+-+.+++.+....+. ... ...|+..+..++. ....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3555666667777777777777665442 111 1234444444433 34567777778777765 35555
Q ss_pred hhHHHHH-HHHhcCc-hHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 130 ACNQLLI-LYKRLDK-KKVADVLLLMEKE--NV-KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204 (460)
Q Consensus 130 ~~~~ll~-~~~~~~~-~~a~~~~~~~~~~--~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 204 (460)
.|...-. .+...|+ ++|.+.|+..... .. +.....+--+...+.-..+|++|.+.|..+.+.. .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5544433 4444555 7777777754421 10 1122344456777888999999999999998764 22344444333
Q ss_pred H-HHHhCCCh-------HHHHHHHHHHH
Q 012577 205 K-HYVSGGRK-------EKAEAMLKEME 224 (460)
Q Consensus 205 ~-~~~~~~~~-------~~a~~~~~~~~ 224 (460)
. ++...++. ++|..+|.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 34466777 78888887764
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.47 E-value=0.16 Score=48.10 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCHH---------HHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHH
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCESNPWLD---------VCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
.+..+++..+-.||-+.+++++....+.++.. .|..++..++. ....+.|.+++..+.++ -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 44566777777788888877777665543322 34444444443 34677888888888874 35666
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 301 HYTAL-LKVYADHKMLSKGKDLVKQMAESG--C-HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 301 ~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
.|... ...+...|++++|.+.|+...... . +.....+--+...+.-.+++++|.+.|..+.+.+...+...+|..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~- 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA- 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH-
Confidence 66554 355666888999988888765311 1 112233444666677788899999999888877665443333322
Q ss_pred HHHHHhcCCH-------HHHHHHHHHHHH
Q 012577 377 MDQYAKRGDI-------HSTEKIFHRMRQ 398 (460)
Q Consensus 377 ~~~~~~~g~~-------~~a~~~~~~m~~ 398 (460)
..++...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2344556666 778888877653
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.46 E-value=0.82 Score=43.12 Aligned_cols=183 Identities=14% Similarity=0.100 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhccCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH
Q 012577 231 HRWTCRLLLPLYAELGKADQVARIWKLCESNP--WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV 308 (460)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 308 (460)
+..+|..-+..-...|+.+.+.-+|+++...- -...|-..+......|+.+-|..++....+--.+ +......+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 45678888888889999999999999886532 2234555555555568988888888776665333 32222222222
Q ss_pred -HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhhHH---HHHHHHHHhCCCCcCHHHHHHHHHH----
Q 012577 309 -YADHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVEKAD---SILLKAQQQNKFKPMFSSYMLIMDQ---- 379 (460)
Q Consensus 309 -~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~---- 379 (460)
.-..|++..|..+++.+.+. . |+. ..-..-+....+.|..+.+. +++..... . .-+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c--ccCcchhHHHHHHHHHH
Confidence 33478999999999999886 3 443 33333344556778888777 44333321 1 1122222222222
Q ss_pred -HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 380 -YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 380 -~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.-.++.+.|..++.++.+. ++++...|..+++-+...+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 23468899999999999987 48888999999988887764
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.44 E-value=0.29 Score=37.68 Aligned_cols=126 Identities=10% Similarity=0.019 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQS 175 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (460)
-..++..+...+........++.+...+ +.+...++.++..|++.+..+..+.+.. ..+......+++.|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3456666666777888888888877776 3567778888888887766555555542 12223344466667777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG-GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+-++++.-++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777666665531 11122222333 6666666666541 13445555555443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.41 E-value=0.0082 Score=40.74 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSE----GI-EPD-SSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..+++.+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777777777777776532 11 111 4556667777777777777777776654
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.36 E-value=0.73 Score=41.53 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=54.2
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC----Cc-hhHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCChh
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESF----RG-EVVYRTLLANCVA---GNNVKKAEEVFNRMKDKGFPVTSF 129 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~ 129 (460)
.+..+...++-+|....+++...++.+.+...+ ++ ...-....-++-+ .|+.++|++++..+......+++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344455566667888888888888888887641 11 1111122334445 788889998888866666677888
Q ss_pred hhHHHHHHHH
Q 012577 130 ACNQLLILYK 139 (460)
Q Consensus 130 ~~~~ll~~~~ 139 (460)
+|..+.+.|.
T Consensus 219 ~~gL~GRIyK 228 (374)
T PF13281_consen 219 TLGLLGRIYK 228 (374)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.086 Score=44.44 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESG--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIM 377 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 377 (460)
.|+.-+..+ +.|++..|...|...++.. -.-....+-+|..++...|++++|..+|..+.+..+-.|.. ...-.+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444433 4456777777777776642 01123455567777777777777777777777766554433 4556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777777777777777777765
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.26 E-value=0.068 Score=48.69 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP----LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
.+...++.+..+|...|++++|...|+..++. .|+. .+|..+..+|...|+.++|++.++++++.. .+ .
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~---~ 145 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NL---K 145 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ch---h
Confidence 35678999999999999999999999998885 3553 358899999999999999999999988742 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 012577 373 YMLIMD--QYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 373 ~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
|..+.. .+....+.++..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 321111 11122344577778887877764
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.65 Score=39.80 Aligned_cols=143 Identities=11% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
.......|++.+|...|+...... +-+...--.++.+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344566788888888888777654 3345566677778888888888888887765443222222333345556666666
Q ss_pred hHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc--ccCcCHHHHHHHHHHHHhcC
Q 012577 249 DQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT--WKKLSTKHYTALLKVYADHK 313 (460)
Q Consensus 249 ~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 313 (460)
.+...+-..+..+| |...-..+...+...|+.+.|.+.+-.+..+ |.. |...-..|+..+.-.|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 66666666666666 4455566666677777777777666555543 222 3344445555554444
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=96.13 E-value=0.088 Score=40.84 Aligned_cols=93 Identities=9% Similarity=-0.085 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHc
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVA 105 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~ 105 (460)
+......+...|++++|..+|+.+...+ +.+..-+..|..++-..++++.|...|...-.. ..|+..+--...++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 3444445667788888888888777655 234444556666777778888888877764322 1234444455667777
Q ss_pred CCCHHHHHHHHHHHHh
Q 012577 106 GNNVKKAEEVFNRMKD 121 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~ 121 (460)
.|+.+.|...|....+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 7888888888877766
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.12 E-value=0.68 Score=38.86 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCC-CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLD-FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR 91 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (460)
+..+..-.....+.|++++|.+.|+.+..+.+.. ....+.-.++.++.+.++++.|...+++.....|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 3444444455556677777777777777665332 2344555566666677777777776666544433
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.02 E-value=0.49 Score=36.35 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4556666667778888888888777764 46777888888888653 3344444442 12334455577778888
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR-GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
+-++++..++.++. .|...+..+... ++.+.|.+++++ ..+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 88888888776651 122233334444 778888887774 1255678888777664
No 231
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=1.2 Score=40.04 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=37.7
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhccc
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPE 88 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (460)
.-..+.+..++..|+..+....+.. |.+..-|..-+..+...|++++|.--.++-.+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3344566677888888887777664 44455666667777777888877766655433
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.85 E-value=0.19 Score=46.78 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 119 (460)
.++|+++.|.+..+++ .+...|..|.....++|+++-|.+.|.+.
T Consensus 329 l~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3455555555554444 24446666666666666666666666553
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.75 E-value=0.46 Score=44.39 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
..+.|+++.|.++.+. .++...|..|.....+.|+++-|.+.|.+... |..|+-.|...|+.+...++
T Consensus 328 Al~lg~L~~A~~~a~~---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE---LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHCT-HHHHHHHCCC---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHhcCCHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3344444444443322 12333444444444444444444444443322 33344444444444444444
Q ss_pred HHHHHHc
Q 012577 322 VKQMAES 328 (460)
Q Consensus 322 ~~~~~~~ 328 (460)
.+.....
T Consensus 396 ~~~a~~~ 402 (443)
T PF04053_consen 396 AKIAEER 402 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 4444333
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=95.70 E-value=1 Score=41.44 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 358 (460)
...+|.++-+...+.+.. |......+..+....++++.|...|++....+ +....+|......+.-+|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455677777777776654 77777777777777788888888888888753 3344556666666677788888888888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 359 KAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
+..+.++.+.-.......++.|+.. ..++|++++-+-
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 8777665544444444445555554 467777766543
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.59 E-value=1.8 Score=39.55 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHc
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTAL----LKVYAD---HKMLSKGKDLVKQMAESGCHIG----PLAWDALVKL--HVE 346 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~ 346 (460)
-++|+.+++.+.+-.. -|...-|.+ =..|.+ ...+.+-.++-+-+.+.|++|- ...-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6777777777766321 133322222 223332 2345555555556666777663 2333444333 445
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
.|++.++.-+-.-+.+ +.|++.+|..+.-++....++++|..++.. +||+..++++-+
T Consensus 475 qgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred cccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHH
Confidence 6788777765544433 567788888887778888888888888774 355666665543
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.57 E-value=0.24 Score=37.54 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCC-CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLD-FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR 91 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (460)
..++..+..-.....+.|++.+|++.|+.+..+.+.+ ....+.-.++.++.+.+++++|...++...+..|
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4566777777777888888888888888888775443 2345566678888888888888888887666544
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=2.7 Score=41.49 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=55.0
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+.++.-.++..+..+.=..-+...-..+++.+++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 555666677777777776654221 456888888888888866655555444433111111111344567777777
Q ss_pred Cchh-----hhHHHHHhC--CCCcCHHHHHHH
Q 012577 420 TPAY-----GIRDRMRAD--NVFPNKALAAQV 444 (460)
Q Consensus 420 ~~~~-----~~~~~m~~~--~~~p~~~~~~~l 444 (460)
.... -+.+.|... .+.-|.......
T Consensus 786 ~ltls~IkD~ii~~l~~~~~~I~qd~~~Ie~y 817 (933)
T KOG2114|consen 786 TLTLSVIKDYIIKWLNKYSTIIEQDEDAIEVY 817 (933)
T ss_pred ceEEehhHHHHHHHHHhhhHHHHhhHHHHHHH
Confidence 6222 233444433 455555555544
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.54 E-value=0.17 Score=42.77 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 298 STKHYTALLKVYAD-----HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 298 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|. ..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-----------------iP~-nv 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-----------------IPQ-NV 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------------ccH-HH
Confidence 67778887777754 35677777888899999999999999998887655322 221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR 426 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 426 (460)
+....-.|-+ +-+-+++++++|...|+.||..+-..|+.++.+.+-....+.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~ 179 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVK 179 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHH
Confidence 2222222222 234578899999999999999999999999999887544443
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.44 E-value=1.6 Score=38.14 Aligned_cols=222 Identities=17% Similarity=0.117 Sum_probs=113.7
Q ss_pred hhcCChhHHHHHHHHHHhCC--CCCCH------HHHHHHHHHHHhCC-ChHHHHHHHHHHHhC--------CCCCCH---
Q 012577 173 GQSNDLTGMDQVVEAMKSEG--IEPDS------STQAILAKHYVSGG-RKEKAEAMLKEMEGD--------NLKEHR--- 232 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 232 (460)
.+.|+++.|..++.+..... ..|+. ..|+.-.. ..+.+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888887776532 23332 22333333 33445 777776666654332 122222
Q ss_pred --HHHHHHHHHHHhcCChhHHH---HHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 233 --WTCRLLLPLYAELGKADQVA---RIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 233 --~~~~~l~~~~~~~~~~~~a~---~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
.++..++.+|...+..+... .+++.+.. .|+ ...+..-+..+.+.++.+.+.+.+..|...-.. ....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHH
Confidence 45667777777777655444 44444433 233 334444456666678888888888888875221 23444444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH----HHHHHcCCC------hhhHHHHHHHHHHhCCCCcCHH
Q 012577 306 LKVY---ADHKMLSKGKDLVKQMAESGCHIGPL-AWDAL----VKLHVEGGE------VEKADSILLKAQQQNKFKPMFS 371 (460)
Q Consensus 306 i~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l----i~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~ 371 (460)
+..+ ... ....|...+..+....+.|... ....+ +....+.++ ++...++++.+.+..+.+.+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 4444 332 3345666666655544555543 11111 111222222 4444444553332222222322
Q ss_pred HHH---HH----HHHHHhcCCHHHHHHHHHHHH
Q 012577 372 SYM---LI----MDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 372 ~~~---~l----~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+-. ++ ...+.+.+++++|.++|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 22 233556788889988887543
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.42 E-value=0.77 Score=40.45 Aligned_cols=196 Identities=11% Similarity=0.003 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHH----HHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCC---C
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEA----MKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKE---H 231 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~ 231 (460)
.+|..+..+.++.|.+++++..--. ..+. .-. -..|-.+.+++-+..++.+++.+-..-... |..| .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~ 121 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG 121 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc
Confidence 3555666666666666665543221 1111 111 123444444444444555555544433321 2212 0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcc------CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----ccCcCH
Q 012577 232 RWTCRLLLPLYAELGKADQVARIWKLCES------NP--WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT----WKKLST 299 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~ 299 (460)
-...-++..++...+.++++++.|+.... +| ...+|-.|...|.+..++++|.-+.....+. ++. |.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~ 200 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DW 200 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-ch
Confidence 12233455555556666666666654322 11 1225566666666666666666555444321 221 11
Q ss_pred H------HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 300 K------HYTALLKVYADHKMLSKGKDLVKQMAE----SGCHIG-PLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 300 ~------~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
. ....|.-++...|.+..|.+..++..+ .|-++. ......+.+.|-..|+.+.|+.-|+.+.
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1 112233345555666666555555432 332211 1223344455555666666666655543
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.42 E-value=0.91 Score=41.94 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESG-CHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
.+..++.+.|+.++|.+.+++|.+.. ...+......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34445555666666666666665431 1112334555666666666666666666554
No 242
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.41 E-value=1.9 Score=38.59 Aligned_cols=291 Identities=13% Similarity=0.054 Sum_probs=174.9
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH--HhcCc-hHHHHHHHHHHHcCCCCCHH--HHHH
Q 012577 95 VYRTLLANCV--AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY--KRLDK-KKVADVLLLMEKENVKLTQF--SYKI 167 (460)
Q Consensus 95 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~-~~a~~~~~~~~~~~~~~~~~--~~~~ 167 (460)
-|..|-.++. -.|+-..|.++-.+-.+. +..|......++.+- .-.|+ +.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3555555543 467888888777665432 334555555555532 23355 8888899988753 3222 2233
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHH-
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-LKEHRW--TCRLLLPLYA- 243 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~- 243 (460)
|.-..-+.|+.+.|.++-+..-..- +.-...+...+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3334456888888888888776553 2335677888888999999999999988766532 233321 1112222211
Q ss_pred --hcCChhHHHHHHHHhcc-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 244 --ELGKADQVARIWKLCES-NPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 244 --~~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
-..+...|...-.+..+ .|+.. .--.-...+.+.|+..++-.+++.+-+..+.|+.. .+..+.+.|+ .+.
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHH
Confidence 12234444444333322 45443 33344567888999999999999888876666532 1222334443 333
Q ss_pred HHHHHHHH-cCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 012577 320 DLVKQMAE-SGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA-KRGDIHSTEKIFHRM 396 (460)
Q Consensus 320 ~~~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m 396 (460)
.-++.... ...+| +......+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+-+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33333322 11233 456666677777888898888877665543 4577777777776554 448888999888888
Q ss_pred HHc
Q 012577 397 RQV 399 (460)
Q Consensus 397 ~~~ 399 (460)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 764
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.37 E-value=0.12 Score=47.05 Aligned_cols=66 Identities=14% Similarity=-0.109 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS----STQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667778888888888888888888887766 3442 35778888888888888888888887764
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.36 E-value=0.075 Score=31.13 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
++..+..+|.+.|++++|+++|+++.+.. +-|...|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45566666677777777777777776654 4455555444
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=0.37 Score=40.78 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccC-CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc----hhHHHHHHH
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKL-DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG----EVVYRTLLA 101 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ll~ 101 (460)
.....-.+.+.|++..|...|....+..+- +..+..+-=|..++...|+++.|..+|..+.+..|+ +..+-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 333344455556666666666666555311 112223333556666666666666666665544332 345555556
Q ss_pred HHHcCCCHHHHHHHHHHHHhC
Q 012577 102 NCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~ 122 (460)
+..+.|+.++|...|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 666666666666666666654
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.11 E-value=0.95 Score=33.52 Aligned_cols=92 Identities=17% Similarity=0.070 Sum_probs=58.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCC
Q 012577 308 VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM--FSSYMLIMDQYAKRGD 385 (460)
Q Consensus 308 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 385 (460)
++...|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|.+=+++..+..|-+-. ...|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777777665 3556677777777777777777777777777665543211 1122222334556677
Q ss_pred HHHHHHHHHHHHHcC
Q 012577 386 IHSTEKIFHRMRQVG 400 (460)
Q Consensus 386 ~~~a~~~~~~m~~~~ 400 (460)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777777666
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.07 E-value=0.99 Score=33.51 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
..++...+.|.-++-.+++.++...+ .+++...-.+..+|.+.|+..++..++.+.-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444444555555555554444322 44444445555555555555555555555554443
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.64 Score=41.63 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHH-HHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFS-SYMLIMD 378 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~ 378 (460)
.++..+..+|.+.+++.+|+......++.+ ++|....-.=..+|...|+++.|+..|+++.+.. |+-. .-+-++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE---PSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 345666677777777777777777777764 5566666666777777777777777777776643 3322 3333333
Q ss_pred HHHhcCCHH-HHHHHHHHHHH
Q 012577 379 QYAKRGDIH-STEKIFHRMRQ 398 (460)
Q Consensus 379 ~~~~~g~~~-~a~~~~~~m~~ 398 (460)
+-.+..... ...++|..|-.
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333332 33556666653
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.99 E-value=0.8 Score=34.79 Aligned_cols=83 Identities=6% Similarity=0.005 Sum_probs=62.4
Q ss_pred hhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC----chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHH
Q 012577 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFR----GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL 135 (460)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 135 (460)
+..+-.-.....+.|++++|.+.|+.+....| ...+--.|+.+|.+.+++++|...+++.++......-.-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33444455566788999999999999988755 34556678899999999999999999999986544445666666
Q ss_pred HHHHhcC
Q 012577 136 ILYKRLD 142 (460)
Q Consensus 136 ~~~~~~~ 142 (460)
.+++...
T Consensus 90 ~gL~~~~ 96 (142)
T PF13512_consen 90 RGLSYYE 96 (142)
T ss_pred HHHHHHH
Confidence 6554433
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.88 E-value=2.1 Score=37.69 Aligned_cols=129 Identities=12% Similarity=0.275 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh--cCc-----hHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhhcCC-
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKR--LDK-----KKVADVLLLMEKENV---KLTQFSYKILIDIKGQSND- 177 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~~-----~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~- 177 (460)
+++...+++.|.+.|+.-+..+|-+....... ..+ ..+..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677778888877777666664444433 111 567788888887631 2344556655544 3333
Q ss_pred ---hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 178 ---LTGMDQVVEAMKSEGIEPDSS--TQAILAKHYVSGGR--KEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 178 ---~~~a~~~~~~m~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
.+.+..+|+.+.+.|+..+.. ....++..+-.... ..++..+++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 356777888888877665433 23333322222211 346777888888888887776665443
No 251
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=1.5 Score=34.31 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=78.3
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH-----HHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-hhH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT-----LLANCVAGNNVKKAEEVFNRMKDKGFPVTSF-ACN 132 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~ 132 (460)
+...|...++ ++..+..++|+.-|..+.+. .--.|-. ......+.|+...|...|+++-.....|-.. -..
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3334444433 34556677777777776653 1112221 2233566778888888888776654444333 112
Q ss_pred HHHHHH--HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC
Q 012577 133 QLLILY--KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 133 ~ll~~~--~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 196 (460)
-|=.+| ...|. +.+....+.+...+-+.....-..|.-+-.+.|++..|.+.|..+......|.
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 222233 33344 56666666665555444555667777788899999999999998876543444
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.8 Score=41.05 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
...++.+..+|.+.+++..|++.-+..+..+.. |....--=..+|...|+++.|...|+.+++.. +-|..+-+.++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345778888999999999999999999887654 88888888899999999999999999999863 3344444445544
Q ss_pred HHcCCCh-hhHHHHHHHHHHh
Q 012577 344 HVEGGEV-EKADSILLKAQQQ 363 (460)
Q Consensus 344 ~~~~~~~-~~a~~~~~~~~~~ 363 (460)
-.+.... +...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 4444333 3346777777654
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=1.1 Score=38.98 Aligned_cols=153 Identities=8% Similarity=0.003 Sum_probs=100.9
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChh
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD---NLKEHRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 249 (460)
...|++.+|-..++++.+.- +.|..+++-.-.+|.-.|+.+.-...++++... +++...+.-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45788888888888888653 667888888888899999988888888888754 22222222233334456788888
Q ss_pred HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 250 QVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS---TKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 250 ~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+|++.-++..+ ++ |.-.-.++...+--.|++.++.++...-.......+ ..-|-...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888877655 22 444556777777778888888888765443321111 11233333445556888889988876
Q ss_pred HH
Q 012577 325 MA 326 (460)
Q Consensus 325 ~~ 326 (460)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.67 E-value=1.3 Score=32.86 Aligned_cols=87 Identities=17% Similarity=0.071 Sum_probs=60.8
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR---WTCRLLLPLYAELGK 247 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 247 (460)
+....|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4677889999999998877653 557788999999998899999998888887764222122 223333445666777
Q ss_pred hhHHHHHHHHh
Q 012577 248 ADQVARIWKLC 258 (460)
Q Consensus 248 ~~~a~~~~~~~ 258 (460)
.+.|..=|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 77777666554
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.66 E-value=0.53 Score=40.48 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-----DNLKEHRWTCRL 237 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 237 (460)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467778899999999999999999999876 67899999999999999999999999998865 578887766555
Q ss_pred HHHH
Q 012577 238 LLPL 241 (460)
Q Consensus 238 l~~~ 241 (460)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.56 E-value=4 Score=38.01 Aligned_cols=148 Identities=12% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDS-STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (460)
+|.-.-+..+.+.-++.-.+..+. .||- ..|..|. --......+++++|++..+.|-. .+..- ......|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhccc
Confidence 344444555555555555555543 3443 3333222 22344567888888877664321 01000 0000111
Q ss_pred ChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 247 KADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LSTKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
.. .+.+..-..++-..+-..+..++-+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+-
T Consensus 245 ~~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 HF---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ch---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 10 011110001122223345666666788899999998888764322 23446777888888888898888888876
Q ss_pred HH
Q 012577 326 AE 327 (460)
Q Consensus 326 ~~ 327 (460)
.+
T Consensus 322 dD 323 (539)
T PF04184_consen 322 DD 323 (539)
T ss_pred cc
Confidence 44
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.45 E-value=5.1 Score=38.86 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhc
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (460)
.++.+..-++....|++|.+++..-
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555566666666655554
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.44 E-value=0.61 Score=40.13 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHH
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-----VGYVARFKQF 408 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 408 (460)
..++..++..+...|+.+.+.+.++++....+ -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34566677777788888888888888876553 3566788888888888888888888887764 5788888887
Q ss_pred HHHHHHH
Q 012577 409 QTLVQAY 415 (460)
Q Consensus 409 ~~l~~~~ 415 (460)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7777773
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=3 Score=35.90 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
+.+.+|+.+-.+...+....-...+...+++..|..+|....... +-+......++.+|...|+.+.|..++..++..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 445555555444344445555566778899999999998887764 445667777888899999999999999998865
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.18 E-value=0.19 Score=29.34 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSE 191 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 191 (460)
+..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.03 E-value=1.9 Score=32.15 Aligned_cols=139 Identities=9% Similarity=0.056 Sum_probs=73.5
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAE 113 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 113 (460)
+.-.|..++-.++........ +..-++=+|--....-+-+...++++.+-+. -|. ..+|+.....
T Consensus 12 ~ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-G----------GG-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhh-cCc----------hhhcchHHHH
Confidence 445677777777777666543 2223333343333444445555555555432 111 2233344433
Q ss_pred HHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012577 114 EVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 114 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
..+-.+- .+...+...+......|. +...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3332221 134445556666666666 66667777776644 6777777888899999999999999999888887
Q ss_pred C
Q 012577 193 I 193 (460)
Q Consensus 193 ~ 193 (460)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 5
No 262
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.88 E-value=6.9 Score=38.20 Aligned_cols=118 Identities=14% Similarity=-0.004 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHHHHHHh-------CCCCCChhhhHHHHHHHHhcC-----c-hHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 105 AGNNVKKAEEVFNRMKD-------KGFPVTSFACNQLLILYKRLD-----K-KKVADVLLLMEKENVKLTQFSYKILIDI 171 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~~-----~-~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (460)
..++++.|+..|..+.+ .| .+.....+-.+|.+.. + ..|..++......| .|+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455555555555444 33 2334444444444432 1 44555555555555 3444333222222
Q ss_pred Hhh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHHhCC
Q 012577 172 KGQ-SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV--SGGRKEKAEAMLKEMEGDN 227 (460)
Q Consensus 172 ~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 227 (460)
... ..|...|.++|......|. +....+..++.... ...+...|..++.+..+.|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 222 2345566666666665552 22222222111111 2234556666666666655
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.81 E-value=3.6 Score=34.71 Aligned_cols=81 Identities=16% Similarity=0.001 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
...|+. +..-.+.|++++|.+.|+.+...- -+-...+.-.++-++.+.+++++|+..+++.....+.-...-|..-|
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334444 344567899999999999988652 12235566667778888999999999988887754443334455555
Q ss_pred HHHH
Q 012577 240 PLYA 243 (460)
Q Consensus 240 ~~~~ 243 (460)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5544
No 264
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.74 E-value=4.5 Score=35.63 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILA 204 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~ 204 (460)
.+.++++.+.+.|+++....|..+.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4555555555555555555444443
No 265
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.66 E-value=5.7 Score=36.50 Aligned_cols=333 Identities=11% Similarity=0.070 Sum_probs=171.1
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCC----CChhhhHHHHHHHHHhhCHH--------HHHHHH-------HhcccC-
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLD----FIERDYASCLDLIAKLRGLQ--------KAESYI-------QKIPES- 89 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~--------~a~~~~-------~~~~~~- 89 (460)
.++.+...|++.++..+++.+...- ++ .+..+|+.++-.+++.=-++ -+-.++ .++...
T Consensus 134 ~a~sLIe~g~f~EgR~iLn~i~~~l-lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d 212 (549)
T PF07079_consen 134 EAHSLIETGRFSEGRAILNRIIERL-LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFD 212 (549)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHH-hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHh
Confidence 3455678899999988888776543 33 67778887666665531111 111111 112110
Q ss_pred -------CCchhHHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCCCChhh-hHHHHHHHHhcCchHHHHHHHHHHHcCCC
Q 012577 90 -------FRGEVVYRTLLANCVAG--NNVKKAEEVFNRMKDKGFPVTSFA-CNQLLILYKRLDKKKVADVLLLMEKENVK 159 (460)
Q Consensus 90 -------~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~a~~~~~~~~~~~~~ 159 (460)
.|.......++....-. .+..--.++++.....-+.|+-.. ...+...+.+ +.+++..+-+.+....+.
T Consensus 213 ~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~-~~e~~~~~ce~ia~~~i~ 291 (549)
T PF07079_consen 213 QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS-DPEQVGHFCEAIASSKIE 291 (549)
T ss_pred hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-ChHHHHHHHHHHHHHhHH
Confidence 12222222222222211 111122222222222223343222 2223333333 324444443333332211
Q ss_pred C----CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHh----CCChHHHHHHHHHHH
Q 012577 160 L----TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQA-------ILAKHYVS----GGRKEKAEAMLKEME 224 (460)
Q Consensus 160 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-------~l~~~~~~----~~~~~~a~~~~~~~~ 224 (460)
+ =..++..++....+.++-..|.+.+.-+... .|+...-. .+-+..+. .-+..+-+.+++...
T Consensus 292 ~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q 369 (549)
T PF07079_consen 292 KLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ 369 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 1 1346777777888888888888887776654 33332111 12222221 112334455556665
Q ss_pred hCCCCCCHHHHHHHHH---HHHhcCC-hhHHHHHHHHhcc--CCCHHHHHHHH----HHHHc---cCCHHHHHHHHHHHH
Q 012577 225 GDNLKEHRWTCRLLLP---LYAELGK-ADQVARIWKLCES--NPWLDVCMAAI----EAWGK---LNKVEEAEAVFKRMS 291 (460)
Q Consensus 225 ~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~--~~~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~ 291 (460)
..++... .....|+. -+-+.|. -++|..+++.+.. +-|...-|.+. ..|.. ...+..-..+-+-+.
T Consensus 370 s~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~ 448 (549)
T PF07079_consen 370 SYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT 448 (549)
T ss_pred hhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5554321 11222322 2344555 7778888887766 23433222221 22221 234445555555566
Q ss_pred hcccCcCHH----HHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 292 KTWKKLSTK----HYTALLK--VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 292 ~~~~~p~~~----~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
+.|+.|-.+ .-|.|.+ .+...|++.++.-.-..+.+ +.|++.+|.-+.-+.....++++|+.++..+
T Consensus 449 e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----- 521 (549)
T PF07079_consen 449 EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----- 521 (549)
T ss_pred hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----
Confidence 777765433 3444443 34568999998877666665 6799999999999999999999999998754
Q ss_pred CCcCHHHHHH
Q 012577 366 FKPMFSSYML 375 (460)
Q Consensus 366 ~~~~~~~~~~ 375 (460)
+|+..+++.
T Consensus 522 -P~n~~~~ds 530 (549)
T PF07079_consen 522 -PPNERMRDS 530 (549)
T ss_pred -CCchhhHHH
Confidence 466666654
No 266
>PRK09687 putative lyase; Provisional
Probab=93.44 E-value=5 Score=35.13 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 261 NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK-MLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
+++..+-...+.++++.++ ..+...+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .++..+-..
T Consensus 139 D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~ 211 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIE 211 (280)
T ss_pred CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHH
Confidence 3344444444555555554 3344444444432 23333333344444332 12344444444442 245555556
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI 416 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 416 (460)
.+.++.+.|+ ..+...+-...+.. + .....+.++...|.. +|...+.++.+. .||..+-...+.+|.
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 6666666665 33444444443321 1 123455666666663 566666666653 235555555555543
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.36 E-value=6.1 Score=35.94 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI---GPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
...+|..++..+.+.|+++.|...+..+...+... ++...-.-.......|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666777777766666665532111 223333344445555666666666655544
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.33 E-value=1.2 Score=35.72 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
..+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577788888899999999999988887654443 34566777778888888888888777654
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.29 E-value=3.3 Score=32.66 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 012577 183 QVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK 215 (460)
Q Consensus 183 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 215 (460)
++++.+.+.+++|+...+..++..+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444445555555566666666665555443
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=9.5 Score=37.46 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=78.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
..-.+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-.++-... + . +.-|.-+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk--k---s--PIGy~PF 750 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK--K---S--PIGYLPF 750 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc--C---C--CCCchhH
Confidence 344556666777788899999999877654 478888988999999999998877765432 1 1 2477888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.+|.+.|+.++|.+++-+.... + -.+.+|.+.|+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~~ 785 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVGD 785 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhcc
Confidence 99999999999999999876532 1 35666777776
No 271
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.95 E-value=1.8 Score=35.03 Aligned_cols=79 Identities=15% Similarity=-0.001 Sum_probs=44.3
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCh
Q 012577 137 LYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE---GIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
.+.+.|++.|...|-.+...+.--++.....|...|. ..|.+++.+++....+. +-.+|+..+..|+..+.+.|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445566666666666666654444444444444443 55666666666555532 2245566666666666666666
Q ss_pred HHH
Q 012577 214 EKA 216 (460)
Q Consensus 214 ~~a 216 (460)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 555
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.93 E-value=0.27 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 012577 200 QAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
|+.|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.77 E-value=4 Score=32.21 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 283 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
-.++++.+.+.++.|+...+..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++--.|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 346667777888999999999999999999987654 444556677777666655544433 34555555555555
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
+-+ ..+..+++.+...|++-+|.++.+.....+ .+ .-..++.+-.+.++ .-.+++.-.+.
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 256678888999999999999998764432 11 23456777777777 23444444443
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.74 E-value=5.1 Score=33.38 Aligned_cols=200 Identities=16% Similarity=0.031 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHH-
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIE- 272 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~- 272 (460)
...+......+...+++..+...+...... ........+......+...+++..+...+..... .+. .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555555555555555554431 1222334444444555555555555555554443 111 111222222
Q ss_pred HHHccCCHHHHHHHHHHHHhccc--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWK--KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGE 349 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 349 (460)
.+...|+++.|...+........ ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56666777777777776644211 1122333333444556677777777777776652 23 35666667777777777
Q ss_pred hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 350 VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
++.|...+.......+. ....+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777776554321 1233344444444566677777777777664
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.72 E-value=6.4 Score=34.47 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=11.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~ 326 (460)
+.+.++++.|.+.|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 345677777777776543
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.70 E-value=0.32 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888854
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=5.4 Score=33.37 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMK 120 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~ 120 (460)
..-..+|....++++|...+.+..
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Confidence 333344555555555555554443
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.54 E-value=4.1 Score=31.75 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=25.8
Q ss_pred HhhCHHHHHHHHHhcccCCCchhHHHH-HHHHHHcCCCHHHHHHHHHHHHhC
Q 012577 72 KLRGLQKAESYIQKIPESFRGEVVYRT-LLANCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~ 122 (460)
+.++.+++..++.-+.-..|....... -...+.+.|+|.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445566666666555443333222211 122345566666776666666554
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=13 Score=37.01 Aligned_cols=183 Identities=12% Similarity=0.125 Sum_probs=103.7
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
..+.....-+..+.+...++-|..+.+.-...... ..........+.+.|++++|...|-+-+.. +.|. .+|.
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 44556677788888888888888888775532111 123344455566789999999888776543 2222 1233
Q ss_pred HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 012577 137 LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK 215 (460)
Q Consensus 137 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 215 (460)
-|..... .....+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .|... .-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHH
Confidence 3322222 444556667777764 444555667788888888777766665544 23211 112334455555555566
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 216 AEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
|..+-..... +.... --.+...+++++|++.++.+
T Consensus 482 a~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcC
Confidence 5544333222 22222 22344566777777777665
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.13 E-value=17 Score=37.93 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=36.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH--HHHHHHHHHHccCCHHH
Q 012577 205 KHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD--VCMAAIEAWGKLNKVEE 282 (460)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~ 282 (460)
..+.....+++|--.|+..-+. .--+.+|...|+|.+|..+..++....+.. +-..|+.-+...++.-+
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchh
Confidence 3334445555555555433211 123455555666666665555543322222 12344455555555555
Q ss_pred HHHHHHHHH
Q 012577 283 AEAVFKRMS 291 (460)
Q Consensus 283 a~~~~~~m~ 291 (460)
|-++..+..
T Consensus 1018 Aa~il~e~~ 1026 (1265)
T KOG1920|consen 1018 AAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHh
Confidence 555554443
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.87 E-value=6.2 Score=32.39 Aligned_cols=85 Identities=18% Similarity=0.043 Sum_probs=50.6
Q ss_pred HHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADV 149 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~ 149 (460)
-..|-+..|+--|.+.....|+ +.+||-|.-.+...|+++.|.+.|+...+....-+-...|--|..|.-.+..-|.+-
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence 3445555555556655444454 567888888888899999999999998887543333333333433333333555544
Q ss_pred HHHHHH
Q 012577 150 LLLMEK 155 (460)
Q Consensus 150 ~~~~~~ 155 (460)
+...-+
T Consensus 156 ~~~fYQ 161 (297)
T COG4785 156 LLAFYQ 161 (297)
T ss_pred HHHHHh
Confidence 444433
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.62 E-value=19 Score=37.54 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=13.9
Q ss_pred HHHHHHHHhhcC--ChhHHHHHHHHHH
Q 012577 165 YKILIDIKGQSN--DLTGMDQVVEAMK 189 (460)
Q Consensus 165 ~~~li~~~~~~~--~~~~a~~~~~~m~ 189 (460)
...+|..|.+.+ .++.|++...+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344556666655 5555555555554
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=1.3 Score=38.25 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKDKG---FPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILI 169 (460)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (460)
+.+-..++..-....+++.+...+-+++..- ..| ..+-...++.+.+.+.+++..++..=.+.|+-||.++++.+|
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~-~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLR-NWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhc-cccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 3444455555555667888888777766431 111 123345566666666678888888888889999999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHhCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
+.+.+.+++..|.++.-.|....
T Consensus 143 D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999888887777553
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=7.8 Score=32.50 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=41.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc----ccCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKT----WKKLST-KHYTALLKVYADHKMLSKGKDLVKQMAESG---CHIGPLAWDALV 341 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li 341 (460)
.-..+.+...+.+|-..+.+-... .-.++. ..|...|-.+....++..|...++.--+.+ -+-+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 344555555665555444332211 011111 234444555555566666766666633221 122455666666
Q ss_pred HHHHcCCChhhHHHHH
Q 012577 342 KLHVEGGEVEKADSIL 357 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~ 357 (460)
.+| ..|+.+++..++
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 665 446666655543
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.20 E-value=0.31 Score=26.55 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
-+..+|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555555555555555555553
No 286
>PRK09687 putative lyase; Provisional
Probab=91.16 E-value=9.8 Score=33.31 Aligned_cols=232 Identities=9% Similarity=-0.042 Sum_probs=112.5
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH----HHHHHHHHHHHhCCCCCChhhhHHH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV----KKAEEVFNRMKDKGFPVTSFACNQL 134 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~~~~~~~~~l 134 (460)
+.......+..+...|..+-...+..-+.. ++...-...+.++.+.|+. .++...+..+... .|+...-...
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 444555555555555543332222222222 4444545555555555542 3455555555332 2344444444
Q ss_pred HHHHHhcCc------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 135 LILYKRLDK------KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV 208 (460)
Q Consensus 135 l~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 208 (460)
+.++...+. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+ .+|...-...+.++.
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg 184 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 444444432 122222222222 3355555556666666665 345555555443 244444444444555
Q ss_pred hCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 012577 209 SGG-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVF 287 (460)
Q Consensus 209 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 287 (460)
+.+ ....+...+..+.. .++..+-...+.++.+.|+......+.+.+. .+++ ....+.++...|.. +|...+
T Consensus 185 ~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred cCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hHHHHH
Confidence 442 23345555555553 2344555566667777776543334444433 3332 33566667777764 567777
Q ss_pred HHHHhcccCcCHHHHHHHHHHHH
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
..+.+.. ||..+-...+.++.
T Consensus 258 ~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 258 DTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhhC--CChhHHHHHHHHHh
Confidence 6666532 35555555555443
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=8 Score=32.19 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=19.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
.-+..+++.+|+++|++.....+..+..-|
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 335567788888888887765544443333
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.03 E-value=4.6 Score=32.49 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH------HH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP--LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF------SS 372 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 372 (460)
.+..+...|++.|+.+.|.+.+.++.+....+.. ..+-.+|+.....+++..+...+.++........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666554333322 344555566666666666666655553321111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
|..+ .+...+++.+|-+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2334567777777766554
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.83 E-value=6.8 Score=30.90 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHH
Q 012577 196 DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRW-TCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAW 274 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 274 (460)
+...|..-+. .++.+..++|+.-|.++.+.|...-+. .-..........|+-..|...|+++
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei---------------- 120 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI---------------- 120 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH----------------
Confidence 3445554443 456677788888888877776542211 1111222333444444444444444
Q ss_pred HccCCHHHHHHHHHHHHhcccCcCHH-HHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 275 GKLNKVEEAEAVFKRMSKTWKKLSTK-HYTAL--LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
-.....|-.. -..-| ...+..+|.++......+-+-..+-+.-...-..|.-+-.+.|++.
T Consensus 121 ----------------a~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 121 ----------------AADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred ----------------hccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 3322222211 01111 1123345555555555555444433333344445555556667777
Q ss_pred hHHHHHHHHHHh
Q 012577 352 KADSILLKAQQQ 363 (460)
Q Consensus 352 ~a~~~~~~~~~~ 363 (460)
+|.+.|..+...
T Consensus 185 ~A~~~F~qia~D 196 (221)
T COG4649 185 KAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHcc
Confidence 777777666543
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.68 E-value=9.7 Score=32.40 Aligned_cols=281 Identities=12% Similarity=0.141 Sum_probs=160.5
Q ss_pred cCCCCCHHHHHHHHHH-HhhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHhC---CC
Q 012577 156 ENVKLTQFSYKILIDI-KGQSNDLTGMDQVVEAMKSEGIEPDS---STQAILAKHYVSGGRKEKAEAMLKEMEGD---NL 228 (460)
Q Consensus 156 ~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 228 (460)
.+-.||+..=|..-.. -.+..+.++|+.-|++..+..-+... .+...++..+.+.+++++....|.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3446776543332211 13455789999999998876323333 34456788889999999999999888641 11
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHh----ccCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-
Q 012577 229 --KEHRWTCRLLLPLYAELGKADQVARIWKLC----ESNP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL- 297 (460)
Q Consensus 229 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p- 297 (460)
.-+..+.+++++..+...+.+....+++.- .... .-.+-+-+...|...+.+....++++++....-..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123456777777777666666655555432 1111 12234567777888888888888888776542211
Q ss_pred ---C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----cCCChhhHHHHHHHHH
Q 012577 298 ---S-------TKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHIGPLAWDALVKLHV-----EGGEVEKADSILLKAQ 361 (460)
Q Consensus 298 ---~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~ 361 (460)
| ...|..=|+.|....+-.+...++++...-. --|.+... .+|+-|. +.|++++|..-|-++.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 2456667778888887777778888765422 23444333 3444443 4577877765555554
Q ss_pred HhCCC--CcCHH---HHHHHHHHHHhcCCHHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHh--C
Q 012577 362 QQNKF--KPMFS---SYMLIMDQYAKRGDIHSTEKIFH--RMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRA--D 432 (460)
Q Consensus 362 ~~~~~--~~~~~---~~~~l~~~~~~~g~~~~a~~~~~--~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~--~ 432 (460)
+...- .|... -|-.+.+.+.+.|= .-|+ +..-..-.|.....+.|+.+|-+..- .+.-..|++ .
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI--~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNNDI--IEFERILKSNRS 331 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcccH--HHHHHHHHhhhc
Confidence 43211 23222 24444555555441 1111 11111224566778888888876443 222333333 3
Q ss_pred CCCcCHHHHHHH
Q 012577 433 NVFPNKALAAQV 444 (460)
Q Consensus 433 ~~~p~~~~~~~l 444 (460)
.+..|+.+.+.+
T Consensus 332 ~IM~DpFIReh~ 343 (440)
T KOG1464|consen 332 NIMDDPFIREHI 343 (440)
T ss_pred cccccHHHHHHH
Confidence 667777666655
No 291
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.67 E-value=2.5 Score=34.26 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=63.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCChh
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKE---NVKLTQFSYKILIDIKGQSNDLT 179 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~ 179 (460)
+.+.|+ +.|.+.|-.+...+.--++.....|...|.+.+..++..++....+. +-.+|+..+.+|+..+.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 445454 57888888898887777888888888888888779999888877654 33688999999999999999998
Q ss_pred HHH
Q 012577 180 GMD 182 (460)
Q Consensus 180 ~a~ 182 (460)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=7.7 Score=33.82 Aligned_cols=101 Identities=9% Similarity=-0.025 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH
Q 012577 227 NLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD-----VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301 (460)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 301 (460)
|......+...++..-....+++.+...+-.++..|+.. +-.+.+..+. .-++++++.++..=.+.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 444444555556655566677777777776666544321 1122333333 3356788888888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
++.+++.+.+.+++.+|..+...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998887777654
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.00 E-value=2.9 Score=29.17 Aligned_cols=44 Identities=11% Similarity=-0.008 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 318 GKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+.+-++.+....+.|++....+.+++|-+.+++..|.++|+.+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555555555555566555556666666555443
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.91 E-value=0.45 Score=25.91 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a 318 (460)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444433
No 295
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.90 E-value=3.2 Score=29.27 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=16.7
Q ss_pred HHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 287 FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 287 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
++.+...+..|++.+..+.+.+|.+.+++..|.++++.++.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433
No 296
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.83 E-value=12 Score=32.27 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
+++.....|..+|.+.+|.++.+..+..+. .+...+..++..+...||--.+..-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344555667777888888877777776543 46667777777777777755555544443
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.82 E-value=4.1 Score=28.45 Aligned_cols=63 Identities=8% Similarity=0.027 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+.-++.+-++.+...+..|++....+.+.+|.+.+++..|..+++..+.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44566677777777788899999999999999999999999999987754 2334455665554
No 298
>PRK11906 transcriptional regulator; Provisional
Probab=89.77 E-value=17 Score=33.84 Aligned_cols=79 Identities=15% Similarity=0.021 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
++.+.-+...+.+ +-|......+..+..-.++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444444 4455555555555555666666666666666553 2234444444444555666666666666654
Q ss_pred h
Q 012577 225 G 225 (460)
Q Consensus 225 ~ 225 (460)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
No 299
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.75 E-value=18 Score=34.04 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
....+++..++.+..+.-+..+-.++.. ..+-..|..++.+|... ..++-..+++++.+..+. |.+.-..|..-|.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3444555555555555555555544443 33444555566666555 445555666666655443 33333444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 312 HKMLSKGKDLVKQMAESGCHI------GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
++.+.+..+|..+...= -| -...|..+...- ..+.+...++...+.+..|...-...+.-+-.-|....+
T Consensus 145 -ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 -IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred -hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 66666666666665441 22 112444444321 346667777777776666665555666666677888888
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 386 IHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 386 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
+.+|+++++.+.+.+ .-|...-..++.-+..
T Consensus 221 ~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 221 WTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 888888888888766 4455555556655443
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.65 E-value=16 Score=33.25 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE---HRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
..+|..++..+.+.|+++.|...+..+...+... .+.....-+..+-..|+..+|...++.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555666666666666666666555432111 122222334444455555555555443
No 301
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.60 E-value=13 Score=32.21 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKD-KGFPVTSFACNQLLILYKRLDK---KKVADVLLLMEKE-NVKLTQFSYKILID 170 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~li~ 170 (460)
|..|+. +...+.+|+++|+..-- ..+--|......+++......+ ..-.++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 554442 23346677777763322 2344567777777776665322 2222334444332 34677777777888
Q ss_pred HHhhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
.+++.++|.+-.++++..... +...|...|..+|......|+..-..++..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888888888888776654 4556777888888888888887766665543
No 302
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.33 E-value=11 Score=31.18 Aligned_cols=201 Identities=16% Similarity=0.066 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 455566666677777777777777666542 2234455566666666666777777777777766443331 12222222
Q ss_pred -HHHhcCChhHHHHHHHHhcc-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC
Q 012577 241 -LYAELGKADQVARIWKLCES-NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 241 -~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 314 (460)
.+...|+++.+...+..... .| ....+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 66777777777777776533 22 1223333444466778888888888888775332135677778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
++.+...+....... +.....+..+...+...+..+.+...+.......
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 889988888887753 2224445555555556677888888888876644
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=25 Score=34.92 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 109 (460)
++-+.+.+.+++|+..-+......+.-.........|..+...|++++|-+..-.|.. .+..-|..-+..++..++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhcccccc
Confidence 4445555666666666544332210001233445555556666666666666555554 3444454444444444443
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=10 Score=36.22 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=22.5
Q ss_pred HhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012577 72 KLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119 (460)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 119 (460)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344555554444433 23444555555555555555555555543
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.05 E-value=6.2 Score=27.78 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=62.3
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVF 116 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 116 (460)
....++|-.+-+|+...+ ....-+--.-+.++...|++++|..+.+.++. ||...|-+|.. .+.|..+++..-+
T Consensus 18 ~HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~--pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCY--PDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred chHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCC--chHHHHHHHHH--HhhccHHHHHHHH
Confidence 445678888888887664 12233333445667888999999999999874 99999888765 4667777777777
Q ss_pred HHHHhCCCCCChhhhH
Q 012577 117 NRMKDKGFPVTSFACN 132 (460)
Q Consensus 117 ~~m~~~g~~~~~~~~~ 132 (460)
.+|...| .|....|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7887776 33444443
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.02 E-value=8.7 Score=29.48 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=9.2
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 012577 104 VAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~ 122 (460)
...|+|++|.++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555554443
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.72 E-value=6.3 Score=27.88 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE 191 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 191 (460)
+..+-++.+....+.|++....+.+++|.+.+|+..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555666677777777777777777777777777766643
No 308
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.45 E-value=18 Score=32.45 Aligned_cols=120 Identities=9% Similarity=0.058 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCChhhHHHH
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE---GGEVEKADSI 356 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~ 356 (460)
.+.-+.++++.++.++ -+...+..++..+.+..+.++..+-++.+.... +-+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3456677888777744 366677778888888888888888888888863 4467778777776544 2346666666
Q ss_pred HHHHHHhC-----CC----CcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 357 LLKAQQQN-----KF----KPMF-------SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 357 ~~~~~~~~-----~~----~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
|.+.+..- +. .+.. ..+..+...+..+|..+.|..+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 66554321 11 0111 1233334445678999999999999998765
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.37 E-value=0.37 Score=37.21 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=54.8
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
+++.+.+.+.++...++++.+...+...+....+.++..|++.++.++..++++... + +-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 466677778888888888888876655667778888888888877777777776211 1 222346666666676
Q ss_pred hhHHHHHHHHh
Q 012577 248 ADQVARIWKLC 258 (460)
Q Consensus 248 ~~~a~~~~~~~ 258 (460)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.27 E-value=12 Score=30.21 Aligned_cols=127 Identities=9% Similarity=0.059 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCCh-hhh--HHHHHHHHHhhCHHHHHHHHHhcccCCCch----hHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE-RDY--ASCLDLIAKLRGLQKAESYIQKIPESFRGE----VVYR 97 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 97 (460)
..|..++..... +.+ +.....+.+...+ +.+. ..+ -.+...+..++++++|+..++.......|. ..--
T Consensus 55 ~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n--~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 55 AQYQNAIKAVQA-KKP-KSIAAAEKFVQAN--GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHhc-CCc-hhHHHHHHHHhhc--cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 345566665542 233 4444445554443 1121 111 123455677888888888888765432221 2223
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcC
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKEN 157 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~ 157 (460)
.|.+.....|.+++|+.+++...+.+.. ......-.+.+...|+ .+|..-|......+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3456677788888888888876654321 1122223346777777 88888888777764
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.02 E-value=1.7 Score=23.30 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.79 E-value=1.6 Score=24.76 Aligned_cols=27 Identities=37% Similarity=0.398 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666677777666666654
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.77 E-value=1.6 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555544443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.60 E-value=1.7 Score=24.60 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677778888888888888888887764
No 315
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=20 Score=31.74 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE---GIEPDSSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
.+|...++++.+. .+.|...++..=++|.-.|+.+.....++++... +++-....-..+.-++...|-+++|++.-
T Consensus 120 h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A 198 (491)
T KOG2610|consen 120 HEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA 198 (491)
T ss_pred cHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence 6666677777665 3667777777778888888888888888887744 22222333344445566788899998888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC---CHH---HHHHHHHHHHccCCHHHHHHHHHH
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP---WLD---VCMAAIEAWGKLNKVEEAEAVFKR 289 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~---~~~~li~~~~~~~~~~~a~~~~~~ 289 (460)
++..+.+. .|.....+....+...|+..++.++...-...- +.. .|--..-.+...+.++.|+++|+.
T Consensus 199 ~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 199 DRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88777653 367777788888888899888888776544321 111 122233445566889999999974
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.13 E-value=2.1 Score=22.86 Aligned_cols=25 Identities=12% Similarity=0.277 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 374 MLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..+...+.+.|++++|++.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 317
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=86.31 E-value=10 Score=27.16 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=56.0
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
......++|-.+.+|+...+ .....+.-.-+..+...|++++| +..-.....||...|-+|.. .+.|--+++..
T Consensus 17 tG~HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 17 TGHHCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp HTTT-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 44567789999999998876 22333344455677889999999 44444444688888877754 57888889888
Q ss_pred HHHHHHhCC
Q 012577 115 VFNRMKDKG 123 (460)
Q Consensus 115 ~~~~m~~~g 123 (460)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 888887776
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.27 E-value=2.8 Score=22.33 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
..+..+...+...|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467788899999999999999999988754
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.77 E-value=0.39 Score=37.09 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344445555555555555555544433345555555555555555455555444
No 320
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.71 E-value=15 Score=28.69 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=27.7
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPDSSTQA-ILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.+.++.+.+..+++.+.-. .|...... .-...+...|++++|+++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4555666666666666544 33322211 1122345666777777777766554
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.24 E-value=0.75 Score=24.45 Aligned_cols=10 Identities=20% Similarity=0.332 Sum_probs=3.6
Q ss_pred hCHHHHHHHH
Q 012577 74 RGLQKAESYI 83 (460)
Q Consensus 74 ~~~~~a~~~~ 83 (460)
|++++|.+.|
T Consensus 14 g~~~~A~~~~ 23 (33)
T PF13174_consen 14 GDYDEAIEYF 23 (33)
T ss_dssp CHHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 3333333333
No 322
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.09 E-value=77 Score=36.29 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=84.1
Q ss_pred HHHHHHhhCHHHHHHHHHhcccC----CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 67 LDLIAKLRGLQKAESYIQKIPES----FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
..+=.+++.+..|..++++-... ......|..+...|+..+++|...-+...-. .+...+..++. ....|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~-~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILE-HEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHH-HHhhc
Confidence 33445778888888888883211 1122334444457888888887776665311 13333343333 33344
Q ss_pred c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhCCChHHHHHHH
Q 012577 143 K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAIL-AKHYVSGGRKEKAEAML 220 (460)
Q Consensus 143 ~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-~~~~~~~~~~~~a~~~~ 220 (460)
+ ..|...|+.+.+.+ ++...+++-++......|.++.++-..+-..... .+....++.+ +.+-.+.+++|.....+
T Consensus 1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 4 77888888887764 4446677777777777777777776555554332 2333333332 23345667777666655
Q ss_pred H
Q 012577 221 K 221 (460)
Q Consensus 221 ~ 221 (460)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 4
No 323
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.94 E-value=24 Score=30.21 Aligned_cols=271 Identities=11% Similarity=0.073 Sum_probs=158.6
Q ss_pred CCCCCChhhhHHHHHHHHh--cCchHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCChhHHHHHHHHHHhC---CC
Q 012577 122 KGFPVTSFACNQLLILYKR--LDKKKVADVLLLMEKENVKLTQF---SYKILIDIKGQSNDLTGMDQVVEAMKSE---GI 193 (460)
Q Consensus 122 ~g~~~~~~~~~~ll~~~~~--~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~ 193 (460)
.+-.||+..=|..-..-+- ...++|..-|+...+..-..... ....+|..+.+.+++++.+..|.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4556777666654442222 22288888898887763233333 3455788899999999999999998632 11
Q ss_pred --CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-----C
Q 012577 194 --EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD-----NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-----N 261 (460)
Q Consensus 194 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 261 (460)
..+..+.|.++..-....+.+....+|+.-.+. +-...-.|-..+...|...+++.....+++++.. +
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234567788887777777777777776654321 1122223445677888888888888888776543 1
Q ss_pred C---------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-ccCcCHHHHHHHH----HHHHhcCCHHHHHH-HHHHHH
Q 012577 262 P---------WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-WKKLSTKHYTALL----KVYADHKMLSKGKD-LVKQMA 326 (460)
Q Consensus 262 ~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li----~~~~~~g~~~~a~~-~~~~~~ 326 (460)
+ -...|..=|..|....+-.....++++...- ...|.+.....+- ....+.|++++|.. +|+...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 1235777788888888888888888876542 2234444443322 23456788888764 444443
Q ss_pred H---cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-------------CcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 327 E---SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-------------KPMFSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 327 ~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~a~ 390 (460)
. .| .|...++-..+ ++..|.-+.++ .|.....+.++.+|.. +++.+-.
T Consensus 260 NYDEsG-spRRttCLKYL--------------VLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE 323 (440)
T KOG1464|consen 260 NYDESG-SPRRTTCLKYL--------------VLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFE 323 (440)
T ss_pred cccccC-CcchhHHHHHH--------------HHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHH
Confidence 3 33 33333322211 12223332233 2444566777877754 5666666
Q ss_pred HHHHHHHHcCCCccHHHHH
Q 012577 391 KIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 391 ~~~~~m~~~~~~~~~~~~~ 409 (460)
++++.-+. ++-.|+..-+
T Consensus 324 ~Il~~~~~-~IM~DpFIRe 341 (440)
T KOG1464|consen 324 RILKSNRS-NIMDDPFIRE 341 (440)
T ss_pred HHHHhhhc-cccccHHHHH
Confidence 66654433 3454554433
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.63 E-value=26 Score=30.42 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCc--hhhhHHHH-----HhCCCCcCHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTP--AYGIRDRM-----RADNVFPNKALAAQV 444 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~m-----~~~~~~p~~~~~~~l 444 (460)
+++.....|..+|.+.+|.++.++....+ +.+...|..|++.+...|+. +..-++.| ...|+..+...++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 44566678999999999999999999987 88899999999999999993 33333333 234887777666543
No 325
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.60 E-value=46 Score=33.28 Aligned_cols=334 Identities=11% Similarity=0.073 Sum_probs=160.5
Q ss_pred CchHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhh-hHHHHHHHHHhhCHHHHHHHH
Q 012577 5 DISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERD-YASCLDLIAKLRGLQKAESYI 83 (460)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~ 83 (460)
+.....+++.|.+.| .++++..-.-+..+...|+...|..+...+ +++... ...++.. ..+...+...+
T Consensus 163 p~~cd~l~~~~~~~g-~lt~~d~w~R~~~al~~~~~~lA~~l~~~l------~~~~~~~a~a~~al---~~~p~~~~~~~ 232 (644)
T PRK11619 163 PNACDKLFSVWQQSG-KQDPLAYLERIRLAMKAGNTGLVTYLAKQL------PADYQTIASALIKL---QNDPNTVETFA 232 (644)
T ss_pred ChHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHhc------ChhHHHHHHHHHHH---HHCHHHHHHHh
Confidence 344556666665544 344544444455555666666665555433 111111 1122222 23344444444
Q ss_pred HhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC--hhhhHHHHHHHHhcC-chHHHHHHHHHHHcCCC
Q 012577 84 QKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG-FPVT--SFACNQLLILYKRLD-KKKVADVLLLMEKENVK 159 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~~-~~~a~~~~~~~~~~~~~ 159 (460)
...+....+.......+.-+ ...+.+.|..++....... ..+. ......+.......+ ..++...+...... .
T Consensus 233 ~~~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~ 309 (644)
T PRK11619 233 RTTGPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--S 309 (644)
T ss_pred hccCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--c
Confidence 33321101111111112222 2456688888888875433 2222 122334433444443 46666666654433 2
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
.+......-+....+.++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+... . +|-.++
T Consensus 310 ~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~L 382 (644)
T PRK11619 310 QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMV 382 (644)
T ss_pred CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHH
Confidence 244445555666678999999999999886543 233444455677777789999999999987432 1 222222
Q ss_pred HHHHhcCChhHH-H----HHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC
Q 012577 240 PLYAELGKADQV-A----RIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 240 ~~~~~~~~~~~a-~----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 314 (460)
.+ .+.|..-.. . ..-..+...| -..-+..+...|....|...+..+... .+......+...-.+.|.
T Consensus 383 Aa-~~Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~ 454 (644)
T PRK11619 383 AA-QRLGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQW 454 (644)
T ss_pred HH-HHcCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Confidence 11 112211000 0 0000000011 112244555667777777777766653 234444555555556666
Q ss_pred HHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH
Q 012577 315 LSKGKDLVKQMAE-----SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF 370 (460)
Q Consensus 315 ~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (460)
++.+......... ..++ ..|...+..+.+.-.++.++- +..+.+..++.|+.
T Consensus 455 ~~~ai~~~~~~~~~~~~~~rfp---~~~~~~~~~~a~~~~v~~~lv-~ai~rqES~f~p~a 511 (644)
T PRK11619 455 WDLSVQATIAGKLWDHLEERFP---LAWNDEFRRYTSGKGIPQSYA-MAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHhhchhHHHHHHhCC---cchHHHHHHHHHHcCCCHHHH-HHHHHHhcCCCCCC
Confidence 6666554433221 1111 125555555555555555442 22233334455544
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.19 E-value=7.2 Score=32.06 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=31.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhc
Q 012577 28 ALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 28 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (460)
...+..+.+.++..+++...+.-.+.. |.+...-..+++.|+-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455555666666666654444432 334444555666666666666666555543
No 327
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.82 E-value=28 Score=30.23 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHH
Q 012577 298 STKHYTALLKVYAD-HK-MLSKGKDLVKQMAE-SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM 374 (460)
Q Consensus 298 ~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (460)
|..+...+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++.+-.++++......+..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 45555555554443 11 22222333333332 23456667777777777777777777777776654433445666777
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~ 394 (460)
.+|+.....|+..-...+..
T Consensus 243 ~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhh
Confidence 77777777777665555544
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.67 E-value=18 Score=27.85 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 311 DHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
..++.+++..++..|.-. +|+. ..-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 366677777777776653 3332 11112223345667777777777776543
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.46 E-value=51 Score=32.87 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=79.8
Q ss_pred hHHHHHHHHHH-cCCCHHHHHHHHHHHHhCCCCCChh-----hhHHHHHHHHhcCchHHHHHHHHHHHc----CCCCCHH
Q 012577 94 VVYRTLLANCV-AGNNVKKAEEVFNRMKDKGFPVTSF-----ACNQLLILYKRLDKKKVADVLLLMEKE----NVKLTQF 163 (460)
Q Consensus 94 ~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~-----~~~~ll~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 163 (460)
.++-.+...+. ...+++.|...+++.....-.++.. .-..++..+.+.+...|...++...+. +..+-..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCchhHHH
Confidence 34444444444 4566777777776654332222211 122344455555553355555554332 1222223
Q ss_pred HHHHH-HHHHhhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHHhCC---------C
Q 012577 164 SYKIL-IDIKGQSNDLTGMDQVVEAMKSEG---IEPDSSTQAILAKHYV--SGGRKEKAEAMLKEMEGDN---------L 228 (460)
Q Consensus 164 ~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~ 228 (460)
.+..+ +..+...+|...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++.+.... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 333333477887888777765431 1333344444444433 4455566666666553211 1
Q ss_pred CCCHHHHHHHHHHHH--hcCChhHHHHHHHHh
Q 012577 229 KEHRWTCRLLLPLYA--ELGKADQVARIWKLC 258 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 258 (460)
.|...+|..+++.++ ..|+++.+...++.+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233455555555443 456666666655544
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.13 E-value=52 Score=32.77 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=93.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhccCCCHHHHHHHHHHHHc---cCC
Q 012577 204 AKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA-RIWKLCESNPWLDVCMAAIEAWGK---LNK 279 (460)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~li~~~~~---~~~ 279 (460)
...+.-.|+++.|++++-. ..+...+.+.+...+.-|.-.+-.+... .++..-...|....+..||..|++ ..+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 3445668999999988876 2233345555544444333222211111 111111112222456778888876 457
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHH-HHHHhcCCHHHHH-----------HHHHH-HHHcCCCC-CHH---HHHHHHH
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTALL-KVYADHKMLSKGK-----------DLVKQ-MAESGCHI-GPL---AWDALVK 342 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~-----------~~~~~-~~~~~~~~-~~~---~~~~li~ 342 (460)
..+|.++|--+....-+.....+...+ ......++++.-+ .++++ ..--++.. +.. .......
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 788888887766542211112222222 2222223222111 11111 00001222 222 2223344
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHHHHcC-----C-Ccc
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD-QYAKRGD-----------IHSTEKIFHRMRQVG-----Y-VAR 404 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~-----------~~~a~~~~~~m~~~~-----~-~~~ 404 (460)
-+...|++++|..+|+.+.+-+ .-....|..+. +...... ...|..+.+.....+ + ..+
T Consensus 423 ~~e~~g~~~dAi~Ly~La~~~d---~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAEEYD---KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT-HH---HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 5667899999999998653211 11223333332 2332223 344555555444321 1 223
Q ss_pred HHHHHHHHHH-----HHhcCCchhhhHHHHHhCCCCcCH
Q 012577 405 FKQFQTLVQA-----YINAKTPAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 405 ~~~~~~l~~~-----~~~~g~~~~~~~~~m~~~~~~p~~ 438 (460)
..|+..|++. +...|+ ....++.+.+.++-|..
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~-~~~AL~~i~~L~liP~~ 537 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQ-YEQALDIIEKLDLIPLD 537 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHTT-S-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhCCCCCCC
Confidence 4556655543 233344 44556788888888853
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.80 E-value=11 Score=31.00 Aligned_cols=76 Identities=17% Similarity=0.023 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN--LKEHRWTCRLLLPL 241 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 241 (460)
.+..++.+.+.+.+++|+...++-++.. +-|...-..++..+|-.|++++|..-++-.-+.. ..+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566677777777777776666553 4455666677777777888888777666554432 22333455555543
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.39 E-value=20 Score=28.66 Aligned_cols=30 Identities=7% Similarity=-0.042 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHhcccCCCChhhhHHHHHHHHH
Q 012577 41 GKALQLSEWLETNKKLDFIERDYASCLDLIAK 72 (460)
Q Consensus 41 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 72 (460)
+.|.+.++..-..+ |.+...++....++..
T Consensus 8 E~ark~aea~y~~n--P~DadnL~~WG~ALLE 37 (186)
T PF06552_consen 8 EHARKKAEAAYAKN--PLDADNLTNWGGALLE 37 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cHhHHHHHHHHHHHHH
Confidence 34444444433333 4455555555544443
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.09 E-value=4.8 Score=21.43 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666777788888888888888877764
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.59 E-value=5 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666655543
No 335
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.34 E-value=10 Score=25.93 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHH
Q 012577 9 HSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQ 77 (460)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (460)
..+++.+.++| -++.+....+-.+-...|+.+.|.+++..+. ++ +..++.++.++...|.-.
T Consensus 22 ~~v~d~ll~~~-ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg-----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQG-LLTEEDRNRIEAATENHGNESGARELLKRIV-QK-----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC-----CcHHHHHHHHHHHcCchh
Confidence 34455555544 2344444433333334455555555555544 22 124445555555444433
No 336
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.28 E-value=70 Score=32.99 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 122 (460)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4889999999999999999999998764
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.19 E-value=2.5 Score=22.31 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=8.0
Q ss_pred HHcCCChhhHHHHHHHHHH
Q 012577 344 HVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~ 362 (460)
+.+.|++++|.+.|+++++
T Consensus 10 ~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3334444444444444433
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.88 E-value=5.2 Score=23.35 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444555555555554443
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.73 E-value=3.3 Score=20.73 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=7.5
Q ss_pred HHHHHHHhhCHHHHHHHH
Q 012577 66 CLDLIAKLRGLQKAESYI 83 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~ 83 (460)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444433
No 340
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.58 E-value=25 Score=28.63 Aligned_cols=88 Identities=10% Similarity=-0.086 Sum_probs=51.1
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (460)
-+.+.|++++|..-|....+.-.+.. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 45678888888888888776531111 234555556677778888887777777665432 1122222334555555
Q ss_pred ChhHHHHHHHHhc
Q 012577 247 KADQVARIWKLCE 259 (460)
Q Consensus 247 ~~~~a~~~~~~~~ 259 (460)
.++.|+.=|+.+.
T Consensus 183 k~eealeDyKki~ 195 (271)
T KOG4234|consen 183 KYEEALEDYKKIL 195 (271)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555443
No 341
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.51 E-value=18 Score=25.62 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|..+-+.+...+- ....+--+-+..+...|++++|..+.+.+. .||...|-.|- -.+.|..+++..-+..|
T Consensus 22 qEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 22 QEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 677777777665542 133333334556778889999888887763 78888887764 35677777777777777
Q ss_pred HhCCC
Q 012577 224 EGDNL 228 (460)
Q Consensus 224 ~~~~~ 228 (460)
...|-
T Consensus 95 a~sg~ 99 (115)
T TIGR02508 95 AASGD 99 (115)
T ss_pred HhCCC
Confidence 76653
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.38 E-value=5.1 Score=23.39 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=9.3
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 012577 204 AKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~ 224 (460)
..+|...|+.+.|..++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 343
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.35 E-value=12 Score=30.60 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 366 FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
..|+...|..++.++...|+.++|.++.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566666777777777777777777777666654
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.97 E-value=33 Score=27.85 Aligned_cols=54 Identities=7% Similarity=-0.055 Sum_probs=22.7
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
.....|.+++|+..++.....+. .......-.+.+...|+-++|..-|....+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34444455555555444433221 1111222234444455555555555554443
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.65 E-value=59 Score=30.52 Aligned_cols=128 Identities=13% Similarity=-0.052 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcccchhHHHH-HHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQL-SEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANC 103 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~ 103 (460)
....-+..-...|+...|-+- +.-++... -.|+ ............|+++.+...+...... .....+..++++..
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~-~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQ-QDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCC-CCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 344445555566777776554 44444433 2223 3333344556788999988888776554 34556788889999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcC
Q 012577 104 VAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKEN 157 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~ 157 (460)
.+.|+++.|..+-.-|+...+. |+..........-..+. +++...|+++....
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999998888876554 33332222222222333 66666676665543
No 346
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.73 E-value=39 Score=28.01 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EHRWTCRLLLP 240 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 240 (460)
+.+||-|.-.+...|+++.|.+.|+...+....-+-...|.-| ++.--|++.-|.+-+-..-+.+.. |-...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 4578888888888888888888888888764322323333333 233457788877766665554432 2222222221
Q ss_pred HHHhcCChhHHHHHHHHhccCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHhccc------CcCHHHHHHHHHHHHhcC
Q 012577 241 LYAELGKADQVARIWKLCESNPWLDVCMA-AIEAWGKLNKVEEAEAVFKRMSKTWK------KLSTKHYTALLKVYADHK 313 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~------~p~~~~~~~li~~~~~~g 313 (460)
...-++.+|..-+.+--...+..-|-. ++..|.-.=.. ..+++.+..... ..-..||-.|.+.+...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 223445555443332222222222221 22222111111 122222222100 011346666777777777
Q ss_pred CHHHHHHHHHHHHHc
Q 012577 314 MLSKGKDLVKQMAES 328 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~ 328 (460)
+.++|..+|+-....
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 777777777766654
No 347
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.66 E-value=34 Score=32.99 Aligned_cols=149 Identities=17% Similarity=0.111 Sum_probs=86.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVAR 253 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 253 (460)
-.|+++.|..++-.+. ....+.+++.+-+.|-.++|+++- ..|+. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHH
Confidence 3455555555433222 233445555566666666665432 22221 2233456677777776
Q ss_pred HHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 012577 254 IWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG 333 (460)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 333 (460)
+..+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.| +.|
T Consensus 659 la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N 725 (794)
T KOG0276|consen 659 LAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN 725 (794)
T ss_pred HHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc
Confidence 65442 3455677777777788888888877765543 5566666777777776666666666665 222
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
....+|...|+++++.+++.+
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHh
Confidence 233345667788877777654
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.36 E-value=94 Score=32.16 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhccc
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPE 88 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (460)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477788888888888888888888766
No 349
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.73 E-value=77 Score=31.64 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=41.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHhCCCCCCH
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR-------KEKAEAMLKEMEGDNLKEHR 232 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 232 (460)
.+|-.|.++|++++|.++..+.... .......+...+..|....+ -++...-|++..+.....|+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 4778889999999999999655543 24555667777777766432 34666667776665443354
No 350
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.38 E-value=41 Score=27.51 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=55.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLS----TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
.-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 345667777888777777776422211 1233444456667777777777777777654 22233333334567777
Q ss_pred CChhhHHHHHHHHHHhC
Q 012577 348 GEVEKADSILLKAQQQN 364 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~ 364 (460)
..+++|++=|.++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 77888887777776643
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.09 E-value=33 Score=26.37 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-----CCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGF-----PVTSFACNQLLILYKRLDK--KKVADVLLLMEKENVKLTQFSYKI 167 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 167 (460)
..|+++...+..+++...+.+++.+..... ..+...|++++.+...... -.+..+|+.|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666666666777777777666632210 1244556666666644443 344456666666666666666666
Q ss_pred HHHHHhhc
Q 012577 168 LIDIKGQS 175 (460)
Q Consensus 168 li~~~~~~ 175 (460)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66665544
No 352
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=76.00 E-value=13 Score=22.15 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 413 (460)
..+.|-..++..++++|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456667777777777777777777776666654
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.91 E-value=42 Score=29.04 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=49.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----
Q 012577 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV----- 345 (460)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 345 (460)
|.+++..|++.+++...-+--+.--+.-..+...-|-.|.+.+.+..+.++-..-....-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 667777777777665544433322222334555556667777777777776666554321222333655555444
Q ss_pred cCCChhhHHHHH
Q 012577 346 EGGEVEKADSIL 357 (460)
Q Consensus 346 ~~~~~~~a~~~~ 357 (460)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777765
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.80 E-value=79 Score=30.07 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
.|....-+++..+..+-.+.-...+..+|...| .+...|..++.+|... ..++-..+++++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344445555555555555555555555555543 3445555555555555 345555555555554432 222233333
Q ss_pred HHHHhcCChhHHHHHHHH
Q 012577 240 PLYAELGKADQVARIWKL 257 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~ 257 (460)
..|.+ ++.+.+...|..
T Consensus 140 ~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHH-hchhhHHHHHHH
Confidence 33333 444444444443
No 355
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.62 E-value=3.8 Score=30.64 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 381 AKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 381 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
...|.-.+|-.+|++|++.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345667788899999999998876 688887765
No 356
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.60 E-value=79 Score=29.95 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=133.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhc------CChhHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhCCChH-HHHH
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQS------NDLTGMDQVVEAMKSE-GIEPD-SSTQAILAKHYVSGGRKE-KAEA 218 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~------~~~~~a~~~~~~m~~~-g~~~~-~~~~~~l~~~~~~~~~~~-~a~~ 218 (460)
.+|+..... -|+...|+..|..|... ..+.....+++..... +..++ ..-|..+.-.++..+... -|..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 444444432 34555555555554332 2344555666655443 23333 445555555555554433 3333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHH-HHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHh
Q 012577 219 MLKEMEGDNLKEHRWTCRLLLPLYAEL-GKADQV-ARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEA-EAVFKRMSK 292 (460)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 292 (460)
+..+. ..-+...|..-+....+. .+.+.. ..+|..+.. .+....|++.. +...+... ..++-....
T Consensus 381 l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 381 LTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred hhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh----hccchhHHHHHHHHHHHH
Confidence 33232 333444444444444322 232222 222333333 22333344333 11112211 122222222
Q ss_pred cccCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCChhhHHHHHHHHHHhCCCCcC
Q 012577 293 TWKKLSTKHY-TALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE--GGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 293 ~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
.-..|+..|+ +.++..+.+.|-..+|...+..+... .+|+...|..+|+.-.. .-++.-+..+++.+....| .|
T Consensus 453 s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d 529 (568)
T KOG2396|consen 453 SVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--AD 529 (568)
T ss_pred HhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CC
Confidence 2234566555 56778888899999999999999886 36788888888875332 2238889999999999888 56
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 370 FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
+..|.-.+..-...|..+.+-.++.+..+.
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 678888888778899999999988877653
No 357
>PRK10941 hypothetical protein; Provisional
Probab=74.39 E-value=58 Score=28.33 Aligned_cols=78 Identities=10% Similarity=-0.060 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
.+.+-.+|.+.++++.|....+.+..-. +.++.-+.--.-.|.+.|.+..|..=++...+..+-.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3445566777777777777777777652 34455555555567777777777777777766666666655555444444
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.42 E-value=97 Score=30.46 Aligned_cols=272 Identities=14% Similarity=0.047 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhhHHHHHHH-----HhcCc-hHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhh
Q 012577 108 NVKKAEEVFNRMKDKGFPVTSFACNQLLILY-----KRLDK-KKVADVLLLMEK-------ENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 108 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~-----~~~~~-~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~ 174 (460)
+...|.+.++...+.| +......+...| ....+ +.|..+|+.... .| +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4566777777776665 333333332222 22233 777777777765 55 23345556666665
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----h
Q 012577 175 SN-----DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS-GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA----E 244 (460)
Q Consensus 175 ~~-----~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 244 (460)
.. +.+.|..++....+.| .|+....-..+..... ..+...|.++|....+.|..+ .+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCc
Confidence 43 6778999999998888 5665554444333222 246789999999999988653 2223333332 2
Q ss_pred cCChhHHHHHHHHhccCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHH-H---HHh----cCC
Q 012577 245 LGKADQVARIWKLCESNPWLDVCMA--AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLK-V---YAD----HKM 314 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~---~~~----~g~ 314 (460)
..+...|..++++.-......+... .+..+.. +..+.+.-.+..+.+.|.. ...+-...+. . ... ..+
T Consensus 377 ~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 3468888899888766554443322 2333444 7777777777777766543 2222222211 1 111 235
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HhcCCH
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG----GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY----AKRGDI 386 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 386 (460)
.+.+...+......| +......+-..|... .+++.|...+.....+. ...+|+ +...+ .-.. +
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~n-lg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFN-LGYMHEHGEGIKV-L 525 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhh-hhhHHhcCcCcch-h
Confidence 677788888877766 566666777766554 35788888888775543 233443 22222 2234 7
Q ss_pred HHHHHHHHHHHHcC
Q 012577 387 HSTEKIFHRMRQVG 400 (460)
Q Consensus 387 ~~a~~~~~~m~~~~ 400 (460)
..|.+++++..+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 88999999888765
No 359
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.30 E-value=26 Score=31.10 Aligned_cols=94 Identities=10% Similarity=-0.120 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHc
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVA 105 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~ 105 (460)
+..--..+.++|.+++|++.|....... |.++-.+..-..+|.+.+++..|+.--+..... ..-+..|..-+.+-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444455778899999999997765543 447777888888898888888777655443321 0112233333333334
Q ss_pred CCCHHHHHHHHHHHHhC
Q 012577 106 GNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~ 122 (460)
.|...+|.+=++..++.
T Consensus 178 Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLAL 194 (536)
T ss_pred HhhHHHHHHhHHHHHhh
Confidence 45556666655555554
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.16 E-value=12 Score=25.06 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=23.6
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKI 392 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 392 (460)
...+.++|+..|..+.++..-.|+ ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666655554322222 13344555556666665555544
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.03 E-value=14 Score=32.64 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=29.4
Q ss_pred HHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012577 239 LPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (460)
.+-|.+.|.+++|...|..-.. .| +.+.+..-..+|.+...+..|..--...+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445566666666666654332 44 55555556666666666665554444333
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.47 E-value=65 Score=27.93 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=7.2
Q ss_pred HHHHHhCCChHHHHH
Q 012577 204 AKHYVSGGRKEKAEA 218 (460)
Q Consensus 204 ~~~~~~~~~~~~a~~ 218 (460)
|.+++..+++.+++.
T Consensus 90 IQALAEmnrWreVLs 104 (309)
T PF07163_consen 90 IQALAEMNRWREVLS 104 (309)
T ss_pred HHHHHHHhhHHHHHH
Confidence 344455555554443
No 363
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.31 E-value=94 Score=29.40 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=60.7
Q ss_pred HHHhcCCHHHHHHHHHHHH---HcCCCCCH-----HHHHHHHHHHHcCCChhhHHHHHHHHHH------hCCCCcCH---
Q 012577 308 VYADHKMLSKGKDLVKQMA---ESGCHIGP-----LAWDALVKLHVEGGEVEKADSILLKAQQ------QNKFKPMF--- 370 (460)
Q Consensus 308 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~--- 370 (460)
.+.-.|++.+|.+++...- +.|...++ ..||.+.-...+.|.+..+..+|.++.+ ..|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3444677777777665432 12222221 2234444444555666666666655543 22333321
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 371 --------SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 371 --------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
.+||. .-.|...|++-.|.+.|.+.... +.-++..|-.|..+|...
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23332 22466778888888888877765 466777888888887755
No 364
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=71.23 E-value=62 Score=27.28 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=78.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG 348 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (460)
..+..|.+.-++.-|-...+++.+ | ..+- +.+--|.+..+..--.++.+-....+++-+......++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 345556665555555555544443 1 1111 12223334333333334444444455555555555544 34567
Q ss_pred ChhhHHHHHHHHHHhCCC-----------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 349 EVEKADSILLKAQQQNKF-----------KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
+...|...++......|+ .|.......++..|.+ +++++|.+++.++-+.|+.|.. ..+.+.+.+-.
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVVKN 284 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHh
Confidence 777777776665443332 3555556666666554 5789999999999899988754 44556666554
Q ss_pred cC
Q 012577 418 AK 419 (460)
Q Consensus 418 ~g 419 (460)
..
T Consensus 285 ~~ 286 (333)
T KOG0991|consen 285 MD 286 (333)
T ss_pred cc
Confidence 43
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.12 E-value=20 Score=26.57 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 318 GKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
..+-++.+....+.|++.....-+++|-+.+++..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4445555556667777777777777777777777777777766544
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.84 E-value=93 Score=29.12 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=5.8
Q ss_pred HhhCHHHHHHHHH
Q 012577 72 KLRGLQKAESYIQ 84 (460)
Q Consensus 72 ~~~~~~~a~~~~~ 84 (460)
..|+.+.+..+++
T Consensus 11 ~~g~~~iv~~Ll~ 23 (413)
T PHA02875 11 LFGELDIARRLLD 23 (413)
T ss_pred HhCCHHHHHHHHH
Confidence 3444444444444
No 367
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.84 E-value=36 Score=24.46 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|..+.+.+...+. -...+--+-+..+...|++++| +..-. ....||...|-+|- -.+.|..+++...+.++
T Consensus 23 ~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 777788887777652 2333333445567788888888 22222 22267777776663 45778888888777777
Q ss_pred HhCC
Q 012577 224 EGDN 227 (460)
Q Consensus 224 ~~~~ 227 (460)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6655
No 368
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.78 E-value=1.5e+02 Score=31.41 Aligned_cols=255 Identities=13% Similarity=-0.027 Sum_probs=148.0
Q ss_pred HHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCC
Q 012577 81 SYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVK 159 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 159 (460)
.+.+.+.. ++..+-...+..+.+.+..+ +...+....+. ++...-...+.++.+.+. ......+..+.. .
T Consensus 625 ~L~~~L~D--~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~ 695 (897)
T PRK13800 625 ELAPYLAD--PDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---S 695 (897)
T ss_pred HHHHHhcC--CCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---C
Confidence 44444544 67777777777777776543 44555555543 244444444444444432 111223333333 2
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
+|..+-...+..+...+.-+ ...+...+. .+|...-...+.++.+.+..+. +.... -.++..+-...+
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa 763 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALG----DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVA 763 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhc----CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHH
Confidence 56666566666666543221 222333332 5666666677777777655432 22222 234555666677
Q ss_pred HHHHhcCChhH-HHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 240 PLYAELGKADQ-VARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 240 ~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
.++...+..+. +...+..+..+++...-.+.+.++.+.|....+...+..+.+. ++..+-...+.++...+. +++
T Consensus 764 ~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a 839 (897)
T PRK13800 764 KGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVA 839 (897)
T ss_pred HHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cch
Confidence 77777776543 3455666666778777788888888888766555555555543 466666667778877765 345
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
...+..+.+ .|+...-...+.++.+.+....+...+..+.++
T Consensus 840 ~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 840 VPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 566666554 467777778888887764455677777776553
No 369
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.46 E-value=1.2e+02 Score=30.45 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=68.7
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCC---chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFR---GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
=++-+.+.+.+++|+...+......+ -...+...|..+.-.|++++|-...-.|... +..-|-..+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 36667788999999999988877644 3467888999999999999999998888765 4555655555555555
Q ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012577 143 KKKVADVLLLMEKENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (460)
+ -..++.-+....-..+...|..++..+..
T Consensus 438 ~--l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 Q--LTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c--cchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4 11111222222112345567777766665
No 370
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.05 E-value=1.2e+02 Score=30.02 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=30.2
Q ss_pred HHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 284 EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
....+....+-+..+...-..++..|.+.|-.+.|..+.+.+-..-. ...-|..-+..+.++|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444443334555566667777777777777777666544311 12334455555666666666555555444
No 371
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.37 E-value=1e+02 Score=29.04 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=79.8
Q ss_pred HHhCCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHH
Q 012577 207 YVSGGRKEKAEAMLKEME-GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 283 (460)
-...|+.-.|-+-+.... ...-.|+... .....+...|+++.+...+..... .....+...++....+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344566666655444443 3333344333 334456778999999888876554 33445677888888899999999
Q ss_pred HHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 284 EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
...-.-|....+. ++.........--..|-++++...|+++..-+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9998888877665 55555544445555677888988888887653
No 372
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.90 E-value=22 Score=21.17 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 310 ADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
.+.|-.+++..+++.|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666666666655543
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.71 E-value=19 Score=24.17 Aligned_cols=55 Identities=11% Similarity=-0.077 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCC-hhhhHHHHHHHHHhhCHHHHHHH
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFI-ERDYASCLDLIAKLRGLQKAESY 82 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 82 (460)
+..-++ +...++..+|+..++...++..-+++ ..++..++.+++..|++.+++++
T Consensus 10 ie~Glk-LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 10 IEKGLK-LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHH-HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 33556667777777666655422222 23455566666666666665554
No 374
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.52 E-value=12 Score=23.80 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 012577 201 AILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
-.+|.++...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345556666666666666655554
No 375
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.79 E-value=1.1e+02 Score=28.76 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 012577 107 NNVKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 107 ~~~~~a~~~~~~m~~~g~~~~ 127 (460)
++.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 556666666666666554444
No 376
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.75 E-value=99 Score=29.57 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 126 (460)
+..++.+....+....|+.++++|.+.|..|
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 3334444333333445555555555555433
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.68 E-value=44 Score=25.79 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG 75 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (460)
...+...+.+.|..+++. -..+++.+.+.+.+-.|.++++.+...+ .+.+..|--..++.+...|-
T Consensus 5 ~~~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEG-PGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCCC
Confidence 445667777889988874 4456777887877789999999999876 44555555556666666553
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.21 E-value=1.1e+02 Score=28.42 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=38.2
Q ss_pred HHHhhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hCCChHHHHHHHHHHHhC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEGIEPDSS--TQAILAKHYV--SGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 226 (460)
..+...+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788889999999888876 555544 4455555554 456677888888876654
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.19 E-value=51 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHHHHHhcccC---CCchhHHHHHHHHHHcCCCHHHHHHHHHH
Q 012577 78 KAESYIQKIPES---FRGEVVYRTLLANCVAGNNVKKAEEVFNR 118 (460)
Q Consensus 78 ~a~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 118 (460)
.+..+|..|... ..-+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777776553 23456677777777888888888888765
No 380
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=67.15 E-value=1.4e+02 Score=29.64 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=45.2
Q ss_pred CChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012577 126 VTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGI 193 (460)
Q Consensus 126 ~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 193 (460)
+....|..|+..+...+.+...++++++.. . . ...+..++++....|.-....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~-~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-K-K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHh-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 456677888888877777777777777754 1 1 56777788888888877776666666665543
No 381
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=66.08 E-value=78 Score=26.48 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhh--HHHHHHHHHhhCHHHHHHHHHhcccC--CCchh
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY--ASCLDLIAKLRGLQKAESYIQKIPES--FRGEV 94 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 94 (460)
...+....+++++-.+.-...+.+|.+.|..-..-.....+...+ ..-|......|++++|.+...++... ..|..
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 345566667776666665555666666664322211001222222 23456667888888888888776532 11221
Q ss_pred HHHHHH----HHHHcCCCHHHHHHHHHH
Q 012577 95 VYRTLL----ANCVAGNNVKKAEEVFNR 118 (460)
Q Consensus 95 ~~~~ll----~~~~~~~~~~~a~~~~~~ 118 (460)
.+-.|. --..+.|..++|++..+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 221111 124556666666666654
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.08 E-value=41 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=18.9
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 389 (460)
..|+.+.|.+++..+. +. |+ .|..++.++...|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg---~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK---EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC---Cc--HHHHHHHHHHHcCchhhh
Confidence 3455555555555553 21 32 455555555555554443
No 383
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=64.93 E-value=1.8e+02 Score=30.24 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCC
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQ-VGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.++..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|-
T Consensus 1232 K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1232 KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 4444444445555666666666665554 3334555555556665555554
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.62 E-value=26 Score=22.31 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 012577 304 ALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~ 325 (460)
.+|.+|...|++++|.++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 385
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=64.55 E-value=1e+02 Score=27.19 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHHHHccCCHHHHHHHHHH-HHhcccCcCHH----HHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHH
Q 012577 271 IEAWGKLNKVEEAEAVFKR-MSKTWKKLSTK----HYTALLKVYADHKMLSKGKDLV-KQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~ 344 (460)
..-..+...+++.....++ |.+.+ -|++. .|..++++- .|.+-.++. +...++ ..+|..|+.++
T Consensus 262 ~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsav----eWnKkeelva~qalrh-----lK~yaPLL~af 331 (412)
T KOG2297|consen 262 QEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAV----EWNKKEELVAEQALRH-----LKQYAPLLAAF 331 (412)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHHH-----HHhhhHHHHHH
Confidence 3334444556666665554 44443 35554 455555543 333222221 122221 45677888888
Q ss_pred HcCCChhhHH
Q 012577 345 VEGGEVEKAD 354 (460)
Q Consensus 345 ~~~~~~~~a~ 354 (460)
+..|+.+...
T Consensus 332 ~s~g~sEL~L 341 (412)
T KOG2297|consen 332 CSQGQSELEL 341 (412)
T ss_pred hcCChHHHHH
Confidence 8888876543
No 386
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=64.45 E-value=1.1e+02 Score=27.45 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 213 KEKAEAMLKEMEGDNL----KEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
.+.|.+.|++....+. ..++..-..+.....+.|+.+....+++.....++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4567777777776422 334444555666666677766666666666666666677778888887888777777887
Q ss_pred HHHhcc
Q 012577 289 RMSKTW 294 (460)
Q Consensus 289 ~m~~~~ 294 (460)
.....+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 777754
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.22 E-value=55 Score=31.60 Aligned_cols=113 Identities=7% Similarity=-0.073 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCC-CCHHHH-HHHHHHHH-hcccchhHHHHHHHHHhcccCCC-ChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 10 STLTKYAEEGND-LSRAEI-ALAMANLR-TRRMYGKALQLSEWLETNKKLDF-IERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 10 ~~l~~~~~~~~~-~~~~~~-~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
..+..|...|.. .+...+ ..+...|. -+|+..+|+..+....--. .+. ..-..-++...+-+.|...+|.-++..
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-~~h~kdi~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFS-SRHNKDIALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhC-CcccccchhhhHHHHHHHcccccchhheeeh
Confidence 455566555543 233333 33444443 4688888888876544321 011 122355677778888888888777755
Q ss_pred cccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 012577 86 IPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 86 ~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 123 (460)
.....+. ...+-.+.++++..+++......|++..+.|
T Consensus 275 A~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 275 ALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred hccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 5443221 1125566677777777777777777776655
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.68 E-value=99 Score=26.80 Aligned_cols=83 Identities=17% Similarity=0.051 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 262 PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV 341 (460)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (460)
++......+...|.+.|++.+|...|-.-. .|+...+..++......|...++ +...-. .+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HH
Confidence 455566677777777777777776663221 12222222233222222222222 122222 22
Q ss_pred HHHHcCCChhhHHHHHHHHHHh
Q 012577 342 KLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
--|.-.+++..|...++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 3345567788888777766554
No 389
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.67 E-value=14 Score=18.34 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMK 120 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~ 120 (460)
|..+...+...|++++|...|...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444455555555555555444
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.28 E-value=55 Score=26.69 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
..|++.+|..++..+...|+.++|.++..++..-.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46788888888888888888888888877776544
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.81 E-value=52 Score=22.99 Aligned_cols=54 Identities=17% Similarity=0.012 Sum_probs=29.3
Q ss_pred HhhcCChhHHHHHHHHHH----hCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 172 KGQSNDLTGMDQVVEAMK----SEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~----~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
..+.||+.+|.+.+.+.. ..+.... ....-.+.......|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346777777755554443 2322221 12222344455667777777777777654
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.58 E-value=1.1e+02 Score=26.67 Aligned_cols=213 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------hhhhHHHHHHHHhcCc-----hHHHHHHHHHHHcCCCCCHHHHH
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVT-------SFACNQLLILYKRLDK-----KKVADVLLLMEKENVKLTQFSYK 166 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~ 166 (460)
+.+...+.+++++|+..+.++...|+..| ..+...+...|.+.|+ +.....-+.|....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHhhcCC-hhHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhCCChHHHHHHH----HHHHhCCCCCCHHHHH
Q 012577 167 ILIDIKGQSND-LTGMDQVVEAMKSEGIEPDSSTQAI-----LAKHYVSGGRKEKAEAML----KEMEGDNLKEHRWTCR 236 (460)
Q Consensus 167 ~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~ 236 (460)
+|+..+-...+ ++.-+++....++-........... ++..+.+.|++.+|+.+. .++.+-+-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HH-HHHHHhcCChhHHHHHHHHhcc-------CCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhcccCcCHHHHHHHH
Q 012577 237 LL-LPLYAELGKADQVARIWKLCES-------NPWLDVCMAAIEA--WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL 306 (460)
Q Consensus 237 ~l-~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 306 (460)
.+ -.+|....++.++..-+-..+. +|-...-.-++++ .|...++..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 012577 307 KVYADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 307 ~~~~~~g~~~~a~~~~~~~~ 326 (460)
+|.......+|...++.|.
T Consensus 235 -gft~l~~d~kAc~sLkYml 253 (421)
T COG5159 235 -GFTLLKMDVKACVSLKYML 253 (421)
T ss_pred -ccccccchHHHHHHHHHHH
No 393
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.58 E-value=71 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=10.9
Q ss_pred HHHhcCChhHHHHHHHHhccCCC
Q 012577 241 LYAELGKADQVARIWKLCESNPW 263 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~ 263 (460)
.|.+.|.+++|.+++++..++|+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~d~~ 142 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFSDPE 142 (200)
T ss_pred HHHhcCchHHHHHHHHHHhcCCC
Confidence 34445555555555554444433
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.15 E-value=1.1e+02 Score=28.57 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=25.5
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCC---------chhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFR---------GEVVYRTLLANCVAGNNVKKAEEVFNRM 119 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~m 119 (460)
+++..+-.|++..|+++++.+.-..+ .+.+|--+.-+|.-.+++.+|.++|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666665555432211 1223333444455555555555555544
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.11 E-value=78 Score=24.43 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccC-------CCchhHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCChhhhHHH
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPES-------FRGEVVYRTLLANCVAGNN-VKKAEEVFNRMKDKGFPVTSFACNQL 134 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~l 134 (460)
.+.++.-....+++.-..++++.+... ..+...|++++.+.++... --.+..+|+-|.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444445556666666666655332 2355679999999977666 45678889999988899999999999
Q ss_pred HHHHHhcCc
Q 012577 135 LILYKRLDK 143 (460)
Q Consensus 135 l~~~~~~~~ 143 (460)
|.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 998877644
No 396
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.01 E-value=1.7e+02 Score=28.39 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 127 (460)
..++.++. .|+.+.+..++++|.+.|..|.
T Consensus 250 ~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 250 FDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 33444333 3667777777777777665543
No 397
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.71 E-value=1.6e+02 Score=29.26 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=42.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc--ccCcCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKT--WKKLSTKHYTALLKVYADHKMLS------KGKDLVKQMAESGCHIGPLAWDAL 340 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 340 (460)
++..+|...|++..+.++++..... |-+.-...+|..|....+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6677777777777777777766643 22223345666666666666543 2233333332 33456666666
Q ss_pred HHHHHc
Q 012577 341 VKLHVE 346 (460)
Q Consensus 341 i~~~~~ 346 (460)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 555443
No 398
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=59.30 E-value=1.4e+02 Score=27.12 Aligned_cols=223 Identities=13% Similarity=-0.050 Sum_probs=105.7
Q ss_pred HHhcccchhHHHHHHHHHhcc-cCCCChhhhHHHHHHHHHhhCHHHHHHHHHh----cccCCC---chhHHHHHHHHHHc
Q 012577 34 LRTRRMYGKALQLSEWLETNK-KLDFIERDYASCLDLIAKLRGLQKAESYIQK----IPESFR---GEVVYRTLLANCVA 105 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~---~~~~~~~ll~~~~~ 105 (460)
+....+.++|+..+.....+- .......++..+..+.++.|.+++++..--. ..+... --..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777776665444331 0112234566777778888887776654221 111111 12345555566555
Q ss_pred CCCHHHHHHHHHHHHhC-CCCC-ChhhhHHHH--HHHHhcCc-hHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHhhc
Q 012577 106 GNNVKKAEEVFNRMKDK-GFPV-TSFACNQLL--ILYKRLDK-KKVADVLLLMEKENV---KL--TQFSYKILIDIKGQS 175 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~-g~~~-~~~~~~~ll--~~~~~~~~-~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~ 175 (460)
.-++.+++.+-..-... |..| ...-+..++ .++...+. +++.+.|+...+... .| ...++-.|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55566666554443322 2222 111122222 23333333 566666655443210 11 123566667777777
Q ss_pred CChhHHHHHHHHHHhC----CCCCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHH
Q 012577 176 NDLTGMDQVVEAMKSE----GIEPDS------STQAILAKHYVSGGRKEKAEAMLKEMEG----DNLKE-HRWTCRLLLP 240 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~----g~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 240 (460)
.|+++|.-+..+..+. ++ .|. .+...+..++-..|+...|.+..++..+ .|-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777766555443321 21 111 1122233445556666666666555433 22111 1122334555
Q ss_pred HHHhcCChhHHHHHHHH
Q 012577 241 LYAELGKADQVARIWKL 257 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~ 257 (460)
.|...|+.+.|+.-|+.
T Consensus 255 IyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHhcccHhHHHHHHHH
Confidence 66666666666655543
No 399
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.06 E-value=63 Score=28.40 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCH
Q 012577 217 EAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWL 264 (460)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (460)
.++++.+.+.++.|.-+++.-+.-.+.+.=.+.++..+|+.+..+|..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r 310 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR 310 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh
Confidence 456777777788887777777777777777778888888877665544
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.87 E-value=23 Score=30.95 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCC
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEP 195 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 195 (460)
|+.-|....+.||+++|++++++..+.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 5566777777777777777777777666543
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.44 E-value=84 Score=24.28 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=13.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 196 (460)
+++.+...++.-.|.++++++.+.+...+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 34444444444555555555554443333
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.35 E-value=24 Score=18.04 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 384 GDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 384 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
|+.+.|..+|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34555666666666542 33444554443
No 403
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.14 E-value=1.4e+02 Score=26.67 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=21.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 310 ADHKMLSKGKDLVKQMAESGCHIG--PLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
.+.|+..+|.+.++.+.+. ++.. ......++.++....-+.+...++.+
T Consensus 286 RklGrlrEA~K~~RDL~ke-~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE-FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666555443 1110 11223345555554444444444433
No 404
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.86 E-value=35 Score=22.01 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 368 PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
|+...++.++..+++..-+++++..+.++.+.| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444566666666666666677777777777666 3445555555555544
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.56 E-value=33 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.086 Sum_probs=9.7
Q ss_pred HHHHcCCChhhHHHHHHHHHH
Q 012577 342 KLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344455555555555554444
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.13 E-value=60 Score=27.84 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=28.9
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhC---CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 339 ALVKLHVEGGEVEKADSILLKAQQQN---KF-KPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
.+...|.+.|++++|.++|+.+.... |. .+...+...+..++.+.|+.++...+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455566666666666666553221 11 122233444555555566666555544333
No 407
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.07 E-value=66 Score=31.11 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=69.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 312 HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 391 (460)
.|+...|.+.+.......-.-.....-.|.+...+.|..-.|..++.+......-.| .++-.+.+++.-..+++.|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcchhHHHHhhhHHHHH
Confidence 577777777776665432111222334455666667788888888887766543334 577788899999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 392 IFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 392 ~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.|++..+.. +.+.+.=+.|...-|+
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHHHHHh
Confidence 999998875 5566666666655443
No 408
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=56.90 E-value=39 Score=24.42 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=11.1
Q ss_pred HHHHHHHhhCHHHHHHHHHhccc
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPE 88 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~ 88 (460)
+++.+.+|...++|+++++.+.+
T Consensus 67 ViD~lrRC~T~EEALEVInylek 89 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEK 89 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH
Confidence 44444445555555555544443
No 409
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=55.94 E-value=64 Score=22.15 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
++|+.....|+..|...|.++++...-+=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444444444444444444433333333333333333
No 410
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.81 E-value=1.1e+02 Score=24.71 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=5.1
Q ss_pred cCHHHHHHHHHH
Q 012577 368 PMFSSYMLIMDQ 379 (460)
Q Consensus 368 ~~~~~~~~l~~~ 379 (460)
|+..+|+.-+..
T Consensus 111 P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 111 PNNELYRKSLEM 122 (186)
T ss_dssp TT-HHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 444455444443
No 411
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.62 E-value=1.3e+02 Score=25.52 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHhhcCChhHHHHHHHHHHhCCCCCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~~~ 196 (460)
..-...+++.+|+++|++.....+..+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 334556677777777777766544333
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.82 E-value=88 Score=23.41 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE 191 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 191 (460)
-+..+.++.+....+.|++.....-++++-+.+|+..|.++|+-++.+
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345556666666777888888888888888888888888888877754
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.73 E-value=4.1e+02 Score=31.14 Aligned_cols=149 Identities=13% Similarity=-0.006 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH----HhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 98 TLLANCVAGNNVKKAEEVFNRM----KDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
++..+-.+++.+..|...++.- .+. ......|..+...|+.-++ +.+.-+...-.. .|+. ..-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHH
Confidence 4445566788888998888873 222 1123344555557877777 444444432111 2222 2345567
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHH
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCR-LLLPLYAELGKADQV 251 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a 251 (460)
...|++..|...|+.+.+.+ ++...+++-++......|.++.++...+-..... .+....++ .-+.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 78999999999999999885 4447788888877777888887777555544332 22222332 234444667777766
Q ss_pred HHHHH
Q 012577 252 ARIWK 256 (460)
Q Consensus 252 ~~~~~ 256 (460)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 65543
No 414
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=54.55 E-value=67 Score=23.99 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHh
Q 012577 280 VEEAEAVFKRMSK 292 (460)
Q Consensus 280 ~~~a~~~~~~m~~ 292 (460)
+..|+.-+++...
T Consensus 6 ~~kAl~~L~ea~~ 18 (124)
T PF08780_consen 6 FKKALSRLEEALE 18 (124)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.35 E-value=34 Score=29.96 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 012577 366 FKPMFS-SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 366 ~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 409 (460)
+.||.. .|+..|..-.+.||+++|+.++++..+.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344443 35678888888888888888888888888654444443
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.28 E-value=1.6e+02 Score=26.10 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhcCChhH
Q 012577 164 SYKILIDIKGQSNDLTG 180 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~ 180 (460)
+|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45566666666666553
No 417
>PRK10941 hypothetical protein; Provisional
Probab=53.62 E-value=1.5e+02 Score=25.81 Aligned_cols=61 Identities=11% Similarity=-0.073 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.+.+-.+|.+.++++.|+++.+.+..-. +.+..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445556666666666666666666553 334444544555566666666666666655543
No 418
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.53 E-value=1e+02 Score=27.19 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----------cCCHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK----------RGDIHS 388 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 388 (460)
.++++.+.+.++.|....+..+.-.+.+.-.+...+.+|+.+.... . -|..++..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~-----rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-Q-----RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-h-----hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5688888899999999999999999999999999999999886532 2 25555555543 356665
Q ss_pred HHHHHH
Q 012577 389 TEKIFH 394 (460)
Q Consensus 389 a~~~~~ 394 (460)
.+++++
T Consensus 337 nmkLLQ 342 (370)
T KOG4567|consen 337 NMKLLQ 342 (370)
T ss_pred HHHHHh
Confidence 555554
No 419
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.53 E-value=2.5e+02 Score=28.16 Aligned_cols=161 Identities=13% Similarity=-0.005 Sum_probs=87.8
Q ss_pred HHHHHHHH-hcccchhHHHHHHHHHhcccC-CCC---hhhhHHHHHHHHHhhCHHHHHHHHHhcccCC---C-c--hhHH
Q 012577 28 ALAMANLR-TRRMYGKALQLSEWLETNKKL-DFI---ERDYASCLDLIAKLRGLQKAESYIQKIPESF---R-G--EVVY 96 (460)
Q Consensus 28 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~--~~~~ 96 (460)
..+...+. ...+++.|...++.....-.- ... ......++..+.+.+... |.+..++..... + . ...|
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 34444444 568899999999865433211 111 122334556666655555 888777744331 1 1 1223
Q ss_pred HHH-HHHHHcCCCHHHHHHHHHHHHhCC---CCCChhhhHHHHHHHHh--cCc-hHHHHHHHHHHHcC---------CCC
Q 012577 97 RTL-LANCVAGNNVKKAEEVFNRMKDKG---FPVTSFACNQLLILYKR--LDK-KKVADVLLLMEKEN---------VKL 160 (460)
Q Consensus 97 ~~l-l~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~--~~~-~~a~~~~~~~~~~~---------~~~ 160 (460)
.-+ +..+...+++..|.+.++.+...- ..|-...+..++.+... .+. +++.+..+.+.... ..|
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 333 223333489999999999886542 23344444455554432 332 55666665553321 134
Q ss_pred CHHHHHHHHHHHh--hcCChhHHHHHHHHHH
Q 012577 161 TQFSYKILIDIKG--QSNDLTGMDQVVEAMK 189 (460)
Q Consensus 161 ~~~~~~~li~~~~--~~~~~~~a~~~~~~m~ 189 (460)
-..+|..+++.++ ..|+++.+...++++.
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777776654 5777767766665543
No 420
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.16 E-value=46 Score=21.47 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
|....++.++..+++..-.+.++..+.++.+.|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444455555555555555555555555555542 34444444444443
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.15 E-value=89 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKD 121 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (460)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888889999999999988876
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.09 E-value=17 Score=27.38 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=10.4
Q ss_pred CChHHHHHHHHHHHhCCCCCC
Q 012577 211 GRKEKAEAMLKEMEGDNLKEH 231 (460)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~ 231 (460)
|.-.+|-.+|+.|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333445555555555555554
No 423
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=51.42 E-value=79 Score=21.88 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG 75 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (460)
++.+....+...-...|+.+.|..+++.+.+.. .+..+..++.++-..|.
T Consensus 32 L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r----~~~wf~~Fl~AL~~~g~ 81 (88)
T cd08812 32 LTDEDKEQILAEERNKGNIAAAEELLDRLERCD----KPGWFQAFLDALRRTGN 81 (88)
T ss_pred cCHHHHHHHHHHHhccChHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHcCC
Confidence 444444444444334455566666665555411 12244555555555554
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.38 E-value=82 Score=22.00 Aligned_cols=19 Identities=32% Similarity=0.214 Sum_probs=9.5
Q ss_pred HHcCCChhhHHHHHHHHHH
Q 012577 344 HVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~ 362 (460)
....|++++|...+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555443
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.85 E-value=47 Score=28.47 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=10.6
Q ss_pred HHHHHHHhhCHHHHHHHHHhc
Q 012577 66 CLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~ 86 (460)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444444555555555555554
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.84 E-value=1.7e+02 Score=25.42 Aligned_cols=74 Identities=9% Similarity=-0.098 Sum_probs=32.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcccch-----hHHHHHHHHHhcccC-CCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 12 LTKYAEEGNDLSRAEIALAMANLRTRRMYG-----KALQLSEWLETNKKL-DFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 12 l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-----~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
++.+.+.+.+.+......++..+...+.-+ -.-....|- +.+.. .-++..+..+...|.+.|++.+|+..|-.
T Consensus 37 iev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 37 IEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 344444566666666666666555443211 122233344 22211 13455566666666666666666666544
Q ss_pred c
Q 012577 86 I 86 (460)
Q Consensus 86 ~ 86 (460)
-
T Consensus 116 ~ 116 (260)
T PF04190_consen 116 G 116 (260)
T ss_dssp S
T ss_pred c
Confidence 4
No 427
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.64 E-value=2.3e+02 Score=27.06 Aligned_cols=397 Identities=9% Similarity=0.018 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHH-HHHHhhCHHHHHHHHHhcccCCCch-hHHH
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLD-LIAKLRGLQKAESYIQKIPESFRGE-VVYR 97 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 97 (460)
..-+.......+..+.+.+.+.+...+|..|...++..|+ .|..... .+-...+++.|..+|.......|+. ..|-
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d--LWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD--LWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch--hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 4447788888888888888899999999999998744444 4433333 3344445999999998876655543 3333
Q ss_pred HHHHH---H-Hc-------CC-CHHHH-HHHHHHH-HhCCCCCCh--hhhHHH---HHHHHhcCc--hHHHHHHHHHHHc
Q 012577 98 TLLAN---C-VA-------GN-NVKKA-EEVFNRM-KDKGFPVTS--FACNQL---LILYKRLDK--KKVADVLLLMEKE 156 (460)
Q Consensus 98 ~ll~~---~-~~-------~~-~~~~a-~~~~~~m-~~~g~~~~~--~~~~~l---l~~~~~~~~--~~a~~~~~~~~~~ 156 (460)
...+. | .+ .| +.++- .++-+.= ......++. ..++.- ......... +.-..+.+.+...
T Consensus 179 eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~ 258 (568)
T KOG2396|consen 179 EYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSK 258 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22211 1 00 01 00000 1110000 000001111 111100 001111111 1112233333332
Q ss_pred CCCCCHHHHHHH-------------------HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC------C
Q 012577 157 NVKLTQFSYKIL-------------------IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG------G 211 (460)
Q Consensus 157 ~~~~~~~~~~~l-------------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~------~ 211 (460)
+ +-++.+|.-+ -....-.-+-+...++|++.... -|+...|+..|..|... .
T Consensus 259 ~-~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~ 335 (568)
T KOG2396|consen 259 A-PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGK 335 (568)
T ss_pred C-CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 2222222111 11111122334445788887765 57777888888777543 2
Q ss_pred ChHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHH-HHHHHHhccCCCHHHHHHHHHHHHcc-CCHHH-HHHH
Q 012577 212 RKEKAEAMLKEMEGDN-LKEH-RWTCRLLLPLYAELGKADQV-ARIWKLCESNPWLDVCMAAIEAWGKL-NKVEE-AEAV 286 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~-a~~~ 286 (460)
.......+++...+.+ ..++ ...|..+.-.+.......++ ..+-...- ..+...|..-+....+. .+++- -..+
T Consensus 336 ~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f-~~s~k~~~~kl~~~~~s~sD~q~~f~~l 414 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELF-RDSGKMWQLKLQVLIESKSDFQMLFEEL 414 (568)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHh-cchHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 4566677777666543 3332 34566666666665554443 33332211 23344443333333221 12221 1223
Q ss_pred HHHHHhcccCcCHHHHHHHHHHHHhcCC-HHH--HHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 287 FKRMSKTWKKLSTKHYTALLKVYADHKM-LSK--GKDLVKQMAESGCHIGPLA-WDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 287 ~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~--a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
|......-..+....|+... .|+ ... -..++..+...+ .|+..+ -+.++.-+.+.|-..+|...+..+..
T Consensus 415 ~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 415 FNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 33333322223334444444 222 221 123344444443 455544 45678888899999999999999876
Q ss_pred hCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhH-HHHHh
Q 012577 363 QNKFKPMFSSYMLIMDQYAK--RGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIR-DRMRA 431 (460)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~-~~m~~ 431 (460)
.. +|+...|..++..-.. .-+..-+..+|+.|... +..|+..|.-.+.--...|. .+..++ ..|+.
T Consensus 489 lp--p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 489 LP--PFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred CC--CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 54 3667788877765322 22488899999988864 23678889888877778887 344444 44443
No 428
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=49.63 E-value=2.6e+02 Score=27.31 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH--IGPLAWDAL 340 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l 340 (460)
...+|+.-+.--.+.|+.+.+.-+|+...-.- ..-...|--.+......|+.+-|..++....+--++ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34478888888888999999999998876521 112344555555556668888888887776654333 333333333
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCccHHHHHHHHHHH-
Q 012577 341 VKLHVEGGEVEKADSILLKAQQQNKFKPMFS-SYMLIMDQYAKRGDIHSTE---KIFHRMRQVGYVARFKQFQTLVQAY- 415 (460)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~~~~~l~~~~- 415 (460)
+ +-..|+++.|..+++.+.+.. |+.. .-..-+....+.|+.+.+. +++..... | .-+..+...+.--+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFA 447 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHH
Confidence 3 334689999999999987653 5432 2223344566788888877 33333332 2 22333333333333
Q ss_pred ------HhcCCchhhhHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 416 ------INAKTPAYGIRDRMRADNVFPNKALAAQVAQVD 448 (460)
Q Consensus 416 ------~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~~ 448 (460)
.+.++.+..++..+.+. ++++...|..+..+.
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 33333556666555553 355566666664443
No 429
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=49.51 E-value=2.8e+02 Score=27.72 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012577 130 ACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKS 190 (460)
Q Consensus 130 ~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 190 (460)
.|..|+.++.....++...+++++...- .....+..++++....|--+...-+.+.+..
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~ 406 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS 406 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 4666666666665566666666554321 2445566666666666666555555555444
No 430
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.43 E-value=2.3e+02 Score=26.54 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHhcccCCCchh--HHHHHHHHHHcCCCHHHHHHHHH
Q 012577 65 SCLDLIAKLRGLQKAESYIQKIPESFRGEV--VYRTLLANCVAGNNVKKAEEVFN 117 (460)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~ 117 (460)
+.+...+..|+.+-+.-+++.-.. ++.. ...+.+...+..|+.+.+..+++
T Consensus 37 tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 37 SPIKLAMKFRDSEAIKLLMKHGAI--PDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 345555666777666555554222 1110 11223445556677666554443
No 431
>PF13934 ELYS: Nuclear pore complex assembly
Probab=48.69 E-value=1.7e+02 Score=24.78 Aligned_cols=53 Identities=8% Similarity=0.026 Sum_probs=24.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++.++...|+.+.|+.+++.+.-.. .+......++.. ..++.+.+|..+-+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 4555555566666666665543211 112222222222 4445566665554443
No 432
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.83 E-value=1.2e+02 Score=27.28 Aligned_cols=64 Identities=6% Similarity=0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcccCCCc----hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH
Q 012577 76 LQKAESYIQKIPESFRG----EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK 139 (460)
Q Consensus 76 ~~~a~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 139 (460)
.+++...+..+...-|+ +..|-++.+.....|.++.++.+|++.+..|..|-...-..++..+.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 55667677755444444 45688888888888999999999999998888887766666666554
No 433
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=47.63 E-value=3.3e+02 Score=27.95 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=44.1
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--h----HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 012577 104 VAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--K----KVADVLLLMEKENVKLTQFSYKILIDIKGQSND 177 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (460)
++.++++.|+..+.+|.+.|..|....-..++.+...-|. . -+...++.....|++--........-.++.+-+
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apK 348 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPK 348 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCC
Confidence 3568899999999999999977765555555545544443 2 233444455555654433333333333343433
Q ss_pred hhHH
Q 012577 178 LTGM 181 (460)
Q Consensus 178 ~~~a 181 (460)
-..+
T Consensus 349 Sns~ 352 (725)
T PRK13341 349 SNSV 352 (725)
T ss_pred ccHH
Confidence 3333
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.35 E-value=1.5e+02 Score=23.62 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (460)
.+...|++++..=. .++..+...++.-.|.++++.+.+.. ..++..|.-.-+..+.+.|-+.
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHHCCCEE
Confidence 34556666655433 34444444566667788877775543 3444445444556666666544
No 435
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.90 E-value=2.3e+02 Score=25.56 Aligned_cols=118 Identities=9% Similarity=0.093 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChh
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD------HKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVE 351 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~ 351 (460)
.++++..+++.....+. |-+......|.++.. .-+|.....+|+-+.... |++ .+.|--+ +.++....+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHH-HHHHhhhHH
Confidence 36778888888777665 678888877776643 346778888888887754 433 3444333 345555677
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 352 KADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.+....+.+..+..+.--...+..-...+.+.|+.++|...|++....-
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 7888887776553333333344555677889999999999999998753
No 436
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=45.57 E-value=97 Score=21.22 Aligned_cols=53 Identities=15% Similarity=-0.002 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKA 79 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (460)
-++.+....+.......|+.+.|..+++.+. ++ +..+..++.++...|.-.-|
T Consensus 29 ~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~-----~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 29 CLTAEDKERIQAAENNSGNIKAAWTLLDTLV-RR-----DNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred cCCHHHHHHHHHHHhcCChHHHHHHHHHHHh-cc-----CChHHHHHHHHHHcCCHHHH
Confidence 3455555555555555566666666666665 21 12455566666555554443
No 437
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.56 E-value=1.4e+02 Score=23.85 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=41.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH
Q 012577 12 LTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 12 l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
.+.+.+.|..+++.-. .++..+...+..-.|.++++.+.+.+ ...+..|....+..+...|-+
T Consensus 14 ~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 14 EKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHHCCCE
Confidence 3444556777777544 56666666666778888998888776 445655655566666666644
No 438
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.38 E-value=2.6e+02 Score=26.11 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHh
Q 012577 237 LLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
.|++.++-.||+..|+++++.+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc
Confidence 4445555555555555555543
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.35 E-value=3.4e+02 Score=27.42 Aligned_cols=322 Identities=10% Similarity=0.005 Sum_probs=145.1
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
....-...+..+++.+++.....++..-+ .+...--....+....|+.++|.+....+-..|. ..+..++.++..+
T Consensus 98 ~~~Lr~~~l~~La~~~~w~~~~~~~~~~p---~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~ 173 (644)
T PRK11619 98 ARSLQSRFVNELARREDWRGLLAFSPEKP---KPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVW 173 (644)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHhcCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHH
Confidence 33334444555555666666555222211 2333333445566667777777666666655542 3566677777777
Q ss_pred HhcCc---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHh---------CCCCCCHHHHHHHHHH
Q 012577 139 KRLDK---KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKS---------EGIEPDSSTQAILAKH 206 (460)
Q Consensus 139 ~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~g~~~~~~~~~~l~~~ 206 (460)
.+.|. +...+-+..+...| +...-..+..... .+.....+.+..+.. ..++|+...-..++.+
T Consensus 174 ~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (644)
T PRK11619 174 QQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVA 248 (644)
T ss_pred HHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHH
Confidence 66665 22222222222222 1111111222110 000000000000000 0112232111111112
Q ss_pred H--HhCCChHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCH
Q 012577 207 Y--VSGGRKEKAEAMLKEMEGDN-LKEHR--WTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKV 280 (460)
Q Consensus 207 ~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~ 280 (460)
+ ....+.+.|...+....... ..+.. .+...+.......+..+++...++.... ..+......-+....+.+++
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCH
Confidence 2 23445677777777664332 22211 2223333222333224455555554332 12333333334444466777
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCCC--------CH-H----
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES------------GCHI--------GP-L---- 335 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------~~~~--------~~-~---- 335 (460)
+.+...+..|..... -...-.--+..++...|+.++|..+|+.+... |.++ .. .
T Consensus 329 ~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~ 407 (644)
T PRK11619 329 RGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQ 407 (644)
T ss_pred HHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhcc
Confidence 777777777654322 13334444566666677777777777776321 1110 00 0
Q ss_pred -HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 336 -AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 336 -~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
.-..-+..+...|....|...+..+... . +......+.....+.|.++.++....
T Consensus 408 ~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~--~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 408 GPEMARVRELMYWNMDNTARSEWANLVAS--R--SKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred ChHHHHHHHHHHCCCHHHHHHHHHHHHhc--C--CHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0011233445567777777777766542 2 22344455555556666666665554
No 440
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=45.25 E-value=3.2e+02 Score=27.08 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 196 DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
....+..|++.+ +.=+.+...++++++.. .. ...+..++++....|-.....-+.+.+..
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 344555555543 34445666666666643 11 45666677777777776666666665554
No 441
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.74 E-value=2.1e+02 Score=26.58 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=28.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc--ccCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKT--WKKLS-TKHYTALLKVYADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 326 (460)
-.|++...-.|+.....+.++.|.+. |..|. .+| -.+.-+|.-.|++.+|.+.|-...
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566655555555555432 11121 122 233445555566666666555443
No 442
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.62 E-value=1.7e+02 Score=23.72 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcccCCCch----hHH-----HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 012577 76 LQKAESYIQKIPESFRGE----VVY-----RTLLANCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~----~~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~ 122 (460)
++.|+.+|+.+.+..+-. ..- -..+-.|.+.|.+++|.+++++..+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 667888898887653321 111 22344688999999999999998874
No 443
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.37 E-value=3.1e+02 Score=27.87 Aligned_cols=103 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHH
Q 012577 4 PDISIHSTLTKYAEE-GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESY 82 (460)
Q Consensus 4 ~~~~~~~~l~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (460)
+...+...|....+. |...+...+..+++.. .|+...|+.+++.+...+.-..+......++..
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~------------- 243 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGA------------- 243 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcc-------------
Q ss_pred HHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh
Q 012577 83 IQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFA 130 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 130 (460)
.+......|+.++.. ++...++.++++|...|+.+....
T Consensus 244 --------~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 244 --------VDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred --------cCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHH
No 444
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.16 E-value=91 Score=21.01 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHHhcccchhHHHHHHHHHhccc
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKK 55 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~ 55 (460)
++..+.+..--++|+++++++.+++.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 44455555556667777777766663
No 445
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.88 E-value=2.4e+02 Score=25.28 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC---chhHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR---GEVVYRTL 99 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~l 99 (460)
++.....++......+. ..+|+.+.+...+..|...++.+... ...++++-.+..++..+... -...+-..
T Consensus 37 ~~~~~e~l~~~Ird~~M----ap~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~k 110 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDM----APLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRK 110 (393)
T ss_pred CHHHHHHHHHHHHhccc----chHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44444444444443332 24566666666666776666666543 22223333333333333211 13456666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh----CCCCCChhhhHHHHH
Q 012577 100 LANCVAGNNVKKAEEVFNRMKD----KGFPVTSFACNQLLI 136 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~ll~ 136 (460)
...|++-|+-+.|.+.+.+..+ .|.+.|+..+..-+.
T Consensus 111 aeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlg 151 (393)
T KOG0687|consen 111 AEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLG 151 (393)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 7788999999999888876554 355555555444443
No 446
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.81 E-value=2.4e+02 Score=25.19 Aligned_cols=81 Identities=10% Similarity=0.018 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 012577 144 KKVADVLLLMEKENV----KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAM 219 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (460)
..+.+.|+.....+. ..+......++....+.|+.+....+++.... .++..-...++.+.+...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 666677777666421 33555556666777777776665566555554 34666777778888878888887888
Q ss_pred HHHHHhCC
Q 012577 220 LKEMEGDN 227 (460)
Q Consensus 220 ~~~~~~~~ 227 (460)
++.....+
T Consensus 224 l~~~l~~~ 231 (324)
T PF11838_consen 224 LDLLLSND 231 (324)
T ss_dssp HHHHHCTS
T ss_pred HHHHcCCc
Confidence 88777754
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=43.39 E-value=2.1e+02 Score=24.37 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHhCCChHH
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE-G-----------IEPDSSTQAILAKHYVSGGRKEK 215 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-----------~~~~~~~~~~l~~~~~~~~~~~~ 215 (460)
++.+-....+++-+.....+++ +...||..+|+..++.-... | -.|.+.....++..|. .+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHH
Confidence 3444444445655555555544 45678888888877665432 1 1566777777776554 578999
Q ss_pred HHHHHHHHHhCCCCCCH
Q 012577 216 AEAMLKEMEGDNLKEHR 232 (460)
Q Consensus 216 a~~~~~~~~~~~~~~~~ 232 (460)
|.+++.++.+.|..|..
T Consensus 257 A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 257 ALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 99999999999988754
No 448
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.08 E-value=2.8e+02 Score=25.84 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccC----CCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPES----FRG-EVVYRTLLANCVAGNNVKKAEEVFNRMK 120 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 120 (460)
+...+++...-.|+.+...+.++.+++. .|. .++ -.+.-+|.-.|++.+|.+.|-..+
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666778877777788877765 222 123 234445666788888888887654
No 449
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.00 E-value=1.2e+02 Score=22.07 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
+++.+.++...++|+++++-|.+.| ..+...-+.|-..+.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Confidence 4556667777888888888888877 556555555555544443
No 450
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.33 E-value=2.4e+02 Score=24.76 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC--------
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG-------- 384 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 384 (460)
.|...+..+-..+ +......+...|.. ..++++|..+|....+... + .....+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~--~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--G--AACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--H--HHHHHHH-HHHhcCCCchhhhh
Confidence 5666666666654 33344444444433 2356677777776655432 1 1111222 333333
Q ss_pred -------CHHHHHHHHHHHHHcCCCccHHHHH
Q 012577 385 -------DIHSTEKIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 385 -------~~~~a~~~~~~m~~~~~~~~~~~~~ 409 (460)
+...|...+......+.........
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5556666666666665444444443
No 451
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.31 E-value=3.5e+02 Score=27.15 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 126 (460)
...++.++.. |+...++++++++.+.|..+
T Consensus 254 i~~LldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 254 VFRLIDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 3344444443 77788888888887776553
No 452
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.94 E-value=4.6e+02 Score=27.97 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcccchhHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEW 49 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~ 49 (460)
.+...++.+...++|.+|..+.+.
T Consensus 696 LVL~~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 696 LVLAGIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Confidence 445566677778889888777654
No 453
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=41.87 E-value=1.5e+02 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcc
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNK 54 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 54 (460)
.+..++--+.-.|+++.|+++.+...+.+
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 44444444444455555555555444444
No 454
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.84 E-value=1.9e+02 Score=23.60 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhC-------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 339 ALVKLHVEGGEVEKADSILLKAQQQN-------------KFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
+++-.|.+..++.++.++++.+.+.. ...+--...|.....+.+.|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34455556666666666666654321 112333455667777888888888888877
No 455
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.46 E-value=1.1e+02 Score=20.65 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=21.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
+++.+.++.-.++|+++++-|.+.| ..+...-+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455666677777777777777776 4444433333
No 456
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.43 E-value=1.4e+02 Score=21.72 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
-|..++..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 566777777777777777777777765
No 457
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.39 E-value=3.4e+02 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=14.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~ 291 (460)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45556667777777777766654
No 458
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.18 E-value=1.6e+02 Score=22.49 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=12.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 012577 203 LAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
|.-++.+.++++++.++.+.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333455555555555555555443
No 459
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=40.93 E-value=9.7 Score=23.44 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 384 GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 384 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
|-.++.+++|+.|..+.+.|....|+..+.-|...
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~L 40 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYSTL 40 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHHH
Confidence 56678899999999988899988888888777653
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.89 E-value=1.6e+02 Score=29.13 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=60.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCccHHHHHHH
Q 012577 339 ALVKLHVEGGEVEKADSILLKAQQQN-KFKPMFSSYMLIMDQYAKRGDIH------STEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
+|+.+|...|++-.+.++++...... |-+.-...||..++...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 89999999999999999998876533 22223457888889999998754 3444444444 45578888888
Q ss_pred HHHHHhcCC--chhhhHHHHHh
Q 012577 412 VQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 412 ~~~~~~~g~--~~~~~~~~m~~ 431 (460)
+++-..--. ...-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 777665322 33445544444
No 461
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.37 E-value=2.7e+02 Score=24.61 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKD 121 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (460)
-...+..+...|++..|++++.+..+
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455666778888888888877655
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.31 E-value=3.2e+02 Score=25.40 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDN--LKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP 262 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (460)
...+.-+...|...|+++.|++.|.+...-- .+-....|..+|..-.-.|+|..+.....+..+.|
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 3456777788888888888888888754421 11122344455555566777777776666555543
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.26 E-value=1.6e+02 Score=22.01 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 352 KADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHR 395 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 395 (460)
.+.++|..|..+.-..--...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555544332233344555555555666666666666553
No 464
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=39.18 E-value=5e+02 Score=27.61 Aligned_cols=343 Identities=8% Similarity=0.014 Sum_probs=158.7
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHH----H---HHhh---CHHHHHHHHHhcccCCCchhHHHHHH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDL----I---AKLR---GLQKAESYIQKIPESFRGEVVYRTLL 100 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~---~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ll 100 (460)
=+++...+.+++|+..|+++... +|-..+.|.+..++ + ...| .+++|+.-|+.+.....-+--|---.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA 559 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence 35566778899999999988876 34444444443322 2 2223 47889999999877533334454444
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC-CCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hhcC
Q 012577 101 ANCVAGNNVKKAEEVFNRMKDK-GFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIK---GQSN 176 (460)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~ 176 (460)
-+|-+.|++++-.+.+.-..++ ...|-..-..- .-..++.+....+ ...+|.-++-+. -+.-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD----------HLVYRLHESLYKH----RREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH----------HHHHHHHHHHHHH----HHHHHHHHHHHHHhCcccc
Confidence 5677888888877777665554 22222111100 0011111111111 111222121111 1222
Q ss_pred ChhHHHHHHHHHHhCC-------CCCCHHH-----HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 177 DLTGMDQVVEAMKSEG-------IEPDSST-----QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g-------~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
...+-.++|+.+..+- +.+.+.+ +..++. |. .|..---..+|+...+. +|-.+.....-..+.
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 700 (932)
T PRK13184 626 SSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FW-SGFTPFLPELFQRAWDL---RDYRALADIFYVACD 700 (932)
T ss_pred cchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HH-hcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHH
Confidence 2333344555544321 1111111 222222 22 13333333444444432 233444445555577
Q ss_pred cCChhHHHHHHHHhccCCCH---------------HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHH
Q 012577 245 LGKADQVARIWKLCESNPWL---------------DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVY 309 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 309 (460)
.|.++-+.+....+...-+. ..|-.-+.++.....++++.+.+....... -...+..++.-.
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 777 (932)
T PRK13184 701 LGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTL---ILYAFDLFAIQA 777 (932)
T ss_pred hccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHH---HHHHHHHHHHHH
Confidence 78887777666555431111 112222344444455555555433222110 122333444334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 012577 310 ADHKMLSKGKDLVKQMAESGCHIG--PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (460)
...++.+....+.+.+.+.-.+.. ......-|.+|.-..++++|-+++..........-....+-....-++-.++-+
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (932)
T PRK13184 778 LLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDRE 857 (932)
T ss_pred HHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchh
Confidence 444555555555555554422111 223345567777778888888888655333221111122222222234456666
Q ss_pred HHHHHHHHHH
Q 012577 388 STEKIFHRMR 397 (460)
Q Consensus 388 ~a~~~~~~m~ 397 (460)
-|..-|..-+
T Consensus 858 ~~~~~~~~~~ 867 (932)
T PRK13184 858 AAKAHFSGCR 867 (932)
T ss_pred HHHHHHhhcc
Confidence 6666665555
No 465
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.34 E-value=1.9e+02 Score=22.39 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 455666666666665555555554444555554443
No 466
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.00 E-value=1.3e+02 Score=20.66 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++|+-....|+..|+..|..+++.+.-.=-++...++++.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~ 68 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKS 68 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 467
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.55 E-value=1.5e+02 Score=21.09 Aligned_cols=35 Identities=14% Similarity=-0.062 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHH
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVY 96 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (460)
....+.-.|++.|+.+.|.+-|+.=...+|...+|
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34444445555555555555555544444544443
No 468
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.20 E-value=3.4e+02 Score=25.15 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=39.4
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCChhHHHHHHHHhcc
Q 012577 205 KHYVSGGRKEKAEAMLKEMEGDNLKEHRW--TCRLLLPLYA--ELGKADQVARIWKLCES 260 (460)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 260 (460)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456889999999999999987 555544 4445555554 36677888888886644
No 469
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.03 E-value=1e+02 Score=18.91 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
+.-++.+.|++++|.+..+.+.+. .|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 455788999999999999999985 56655444443
No 470
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.94 E-value=5e+02 Score=26.99 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHcCCCCCH-------HHHHHHH-HHHhhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCC
Q 012577 144 KKVADVLLLMEKENVKLTQ-------FSYKILI-DIKGQSNDLTGMDQVVEAMKSE----GIEPDSSTQAILAKHYVSGG 211 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~-------~~~~~li-~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~l~~~~~~~~ 211 (460)
.+|..+..++...--.|+. ..++.|- ......|+++.|.++-+..... -..+....+..+..+..-.|
T Consensus 432 ~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G 511 (894)
T COG2909 432 AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG 511 (894)
T ss_pred HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc
Confidence 6777766666554212221 1344332 2334578888988888776643 12345667777888888889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHH---HHH--HHHHHhcCChhHH--HHHHHHhcc-----CC----CHHHHHHHHHHHH
Q 012577 212 RKEKAEAMLKEMEGDNLKEHRWTC---RLL--LPLYAELGKADQV--ARIWKLCES-----NP----WLDVCMAAIEAWG 275 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~~~a--~~~~~~~~~-----~~----~~~~~~~li~~~~ 275 (460)
++++|..+..+..+..-.-+...+ ..+ ...+...|+...+ ...|..... .| -..++..+..++.
T Consensus 512 ~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~ 591 (894)
T COG2909 512 ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL 591 (894)
T ss_pred hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 999999888776654222232222 222 2334556633322 222222211 22 1223444444544
Q ss_pred ccCCHHHHHHHHHHH----HhcccCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH--
Q 012577 276 KLNKVEEAEAVFKRM----SKTWKKLSTKHY--TALLKVYADHKMLSKGKDLVKQMAESGCHI----GPLAWDALVKL-- 343 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m----~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~-- 343 (460)
+ .+.+..-.... ......|-...+ ..|+......|+.++|...++++......+ +...-...+..
T Consensus 592 r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~l 668 (894)
T COG2909 592 R---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLIL 668 (894)
T ss_pred H---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHH
Confidence 4 33333222222 222222222222 366777888999999999888887643222 22222222222
Q ss_pred HHcCCChhhHHHHHHH
Q 012577 344 HVEGGEVEKADSILLK 359 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~ 359 (460)
-...|+.+.+.....+
T Consensus 669 wl~qg~~~~a~~~l~~ 684 (894)
T COG2909 669 WLAQGDKELAAEWLLK 684 (894)
T ss_pred hcccCCHHHHHHHHHh
Confidence 2346777777766554
No 471
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=36.77 E-value=1.7e+02 Score=21.55 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
.+.+..+++.+.+.|.--|.......+......+......+-..+.+.|++++.. ...+. .....+.|.++.+.-
T Consensus 8 ~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i--~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 8 EEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREII--EEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHH--HHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHH--HHHHH---HhhHHHHHHHHHHHH
Confidence 3456667778888887766666666666666544455566777777777654322 22222 222233455555443
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhCC
Q 012577 189 KSEG-IEPDSSTQAILAKHYVSGG 211 (460)
Q Consensus 189 ~~~g-~~~~~~~~~~l~~~~~~~~ 211 (460)
.... -.++.....-++..+.+.|
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HhcccCCCCHHHHHHHHHHHHHCC
Confidence 3221 2345555555555555555
No 472
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=36.57 E-value=5.3e+02 Score=27.17 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEG-DNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 246 (460)
.++..-...+...|++..|.+++.++.+ .|-.++...+..++..+...|
T Consensus 1232 K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1232 KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3333333344445555555555555443 233344444444444433333
No 473
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.55 E-value=35 Score=30.43 Aligned_cols=90 Identities=12% Similarity=-0.073 Sum_probs=47.4
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch-hHHHHHHHHHHcCCCHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE-VVYRTLLANCVAGNNVKKA 112 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a 112 (460)
....|.++.|++.|......+ ++....|..-.+.+.+.++...|++-+.......+|. ..|-.--.+..-.|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 344566666666665555443 3444455555556666666666666555554443432 2232222333345666666
Q ss_pred HHHHHHHHhCCCC
Q 012577 113 EEVFNRMKDKGFP 125 (460)
Q Consensus 113 ~~~~~~m~~~g~~ 125 (460)
...|....+.+..
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 6666666555543
No 474
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.38 E-value=3.5e+02 Score=24.93 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=38.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 012577 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA-DHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 327 (460)
|..+.+.|-+..|.++-+-+..-++.-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5666777778888887777777666556666666676665 45666666666666544
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.31 E-value=3.6e+02 Score=25.11 Aligned_cols=91 Identities=11% Similarity=-0.028 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC---------CCCCCH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD---------NLKEHR 232 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 232 (460)
.+.-+.+.|..+|+++.|.+.|.+..+-- .+.....|-.+|..-.-.|+|.....+..+.... .+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 56678888999999999999998865431 1223445556666666678887777777666543 123333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 012577 233 WTCRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
..+..+...+.+ ++..|.+.|-
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH
Confidence 444444444433 6666655553
No 476
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.96 E-value=2.3e+02 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKD 121 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~ 121 (460)
.-|.-+.+.|+++.+..-|.+...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 456667788888888888877654
No 477
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.62 E-value=2.7e+02 Score=23.50 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=56.8
Q ss_pred HHHHHHHH--HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH-HHHHHHHHHHc
Q 012577 200 QAILAKHY--VSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD-VCMAAIEAWGK 276 (460)
Q Consensus 200 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~ 276 (460)
|..++.++ ...+++++|...+-+ ..+.|+- -..++.++...|+.+.|..+++......... ....++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 34444444 355677777766622 2222222 2246777777888888888888765543322 22333333 55
Q ss_pred cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
++.+.+|..+-+...+.. ....+..++..+..
T Consensus 153 ~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred cCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 577777877766555421 13355555555553
No 478
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.43 E-value=4.3e+02 Score=25.74 Aligned_cols=94 Identities=6% Similarity=0.059 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHH---HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVVY---RTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK 139 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 139 (460)
...++.-|.+.+++++|..++..|.-..-....| +.+.+.+.+..--++....++.+...-..|....-.....-|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 3457778888899999999888886432223333 3444555565555555666666655433343333333333333
Q ss_pred hcCchHHHHHHHHHHHc
Q 012577 140 RLDKKKVADVLLLMEKE 156 (460)
Q Consensus 140 ~~~~~~a~~~~~~~~~~ 156 (460)
..=..-|.+.|..|.+.
T Consensus 491 d~V~~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 491 DPVSDLARRFFHHLLRY 507 (545)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 21114455555555543
No 479
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.05 E-value=4.1e+02 Score=25.41 Aligned_cols=235 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHH--HHHH-----HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHH-HhhCHHHHH
Q 012577 9 HSTLTKYAEEGNDLSRAEIAL--AMAN-----LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIA-KLRGLQKAE 80 (460)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~--ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~ 80 (460)
.++++.+.+.|..++...-.. .+.. ....++.+-+.-+++.-..-. ..+....+.+..+.. ..|+.+-+.
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~--~~d~~g~tpL~~A~~~~~~~~~iv~ 125 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN--APDNNGITPLLYAISKKSNSYSIVE 125 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC--CCCCCCCchhhHHHhcccChHHHHH
Q ss_pred HHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhh--HHHHHHHHhcCchHHHHHHHHHHHcCC
Q 012577 81 SYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFAC--NQLLILYKRLDKKKVADVLLLMEKENV 158 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~~~~~~~~~a~~~~~~~~~~~~ 158 (460)
.+++.-.........-.+.+...+..|. .-.++.+.+.+.|..++...- .+.+...+..| -.++.+.+.+.|.
T Consensus 126 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~---~~~iv~~Ll~~ga 200 (480)
T PHA03100 126 YLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG---NIDVIKFLLDNGA 200 (480)
T ss_pred HHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC---CHHHHHHHHHcCC
Q ss_pred CCCHHHH--------HHHHHHHhhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 159 KLTQFSY--------KILIDIKGQSND--LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 159 ~~~~~~~--------~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
.++.... ...+...+..|+ .+-+.-+++.-..-+ .+|..-.+.|..+..... .++++.+.+.|.
T Consensus 201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din-~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~ga 274 (480)
T PHA03100 201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN-IKDVYGFTPLHYAVYNNN-----PEFVKYLLDLGA 274 (480)
T ss_pred CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCC
Q ss_pred CCCHHHHH--HHHHHHHhcCChhHHHHHHH
Q 012577 229 KEHRWTCR--LLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 229 ~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 256 (460)
.++..... +-+......+..+-+..+++
T Consensus 275 d~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 275 NPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.94 E-value=2e+02 Score=21.64 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHHHHhcccC---CCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 012577 77 QKAESYIQKIPES---FRGEVVYRTLLANCVAGNNVKKAEEVFN 117 (460)
Q Consensus 77 ~~a~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 117 (460)
++..++|..|... ..-+..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3356677776654 2234557777788888999999998886
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.79 E-value=1.2e+02 Score=22.04 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=22.8
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (460)
++..+...+..-.|.++++.+.+.. ...+..|.-..++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~-~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKG-PSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhCCCEE
Confidence 3444444455556666666664432 2334444444445555555433
No 482
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.73 E-value=1.3e+02 Score=26.65 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 332 IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
.|+..|...+..-.+.|.+.+...++.+..+..+...|...+. --.-+...++++.+..+|.+..+.+ +.++..|
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~-c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw 179 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYC-CAFELFEIANIESSRAMFLKGLRMN-SRSPRIW 179 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeee-ccchhhhhccHHHHHHHHHhhhccC-CCCchHH
Confidence 3444454444444444555555555555554443322211111 1112233455555555555555444 3333444
No 483
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.62 E-value=1.2e+02 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=6.4
Q ss_pred cCCChhhHHHHHHHH
Q 012577 346 EGGEVEKADSILLKA 360 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~ 360 (460)
..|++-+|-++++.+
T Consensus 11 n~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 11 NAGDFFEAHEVLEEL 25 (62)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHH
Confidence 344444444444444
No 484
>PRK09857 putative transposase; Provisional
Probab=34.61 E-value=3.3e+02 Score=24.16 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 012577 337 WDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR 404 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 404 (460)
+..++....+.++.++..++++.+.+. .........++..-+.+.|.-+++.++.++|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~--~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER--SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666766665443 222223344555666666766777777888887776654
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.39 E-value=1.2e+02 Score=22.16 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=23.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 204 AKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33334444445566666666665555555555555555555544
No 486
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=3e+02 Score=23.52 Aligned_cols=117 Identities=14% Similarity=0.001 Sum_probs=73.3
Q ss_pred HHhcCChhHHHHHHHHhc-cCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH-HHHHHHHHHhcCCHHHH
Q 012577 242 YAELGKADQVARIWKLCE-SNPWLDV-CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH-YTALLKVYADHKMLSKG 318 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a 318 (460)
|....+++.|...+.+.. .+|++.+ |+.-+.++.+..+++.+.+--...++ +.||.+- ...+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444556777777665443 4777755 45667777788888887776666665 4455543 34455666777788888
Q ss_pred HHHHHHHHH----cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 319 KDLVKQMAE----SGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 319 ~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
+..+.+... +.+++-......|..+=-+.=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888887733 334455566666666544444555566655544
No 487
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.84 E-value=54 Score=29.29 Aligned_cols=98 Identities=9% Similarity=-0.045 Sum_probs=63.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHH
Q 012577 311 DHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 389 (460)
..|.++.|++.|...++.+ ++....|..-..++.+.+....|++=++...+. .||. .-|-.--.+-.-.|+|++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc---CcccccccchhhHHHHHhhchHHH
Confidence 4567888888888777764 555666666667777788888888777766543 3432 2222223344456888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHH
Q 012577 390 EKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 390 ~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
...+....+.++.+....|..=+
T Consensus 202 a~dl~~a~kld~dE~~~a~lKeV 224 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATLKEV 224 (377)
T ss_pred HHHHHHHHhccccHHHHHHHHHh
Confidence 88888888887776655554433
No 488
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=33.62 E-value=5.7e+02 Score=26.63 Aligned_cols=218 Identities=10% Similarity=0.014 Sum_probs=114.1
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCh-------hhhHHHHHHHHh-cCc-hHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 012577 104 VAGNNVKKAEEVFNRMKDKGFPVTS-------FACNQLLILYKR-LDK-KKVADVLLLMEK----ENVKLTQFSYKILID 170 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~-~~~-~~a~~~~~~~~~----~~~~~~~~~~~~li~ 170 (460)
....++++|..+..+....-..|+. ..++.+-..... .++ +.+..+-+.... .-..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999998887654222222 234444332222 233 555555444333 333455667788888
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhCCCh--HHHHHHHHHHHhCC---CC---CCHHHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA-----KHYVSGGRK--EKAEAMLKEMEGDN---LK---EHRWTCRL 237 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~~ 237 (460)
+..-.|++++|..+..+..+..-..+...+..+. ..+...|+. .+.+..|....... .+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8899999999999887765442233444433332 234556633 33333333332211 11 11223344
Q ss_pred HHHHHHhcCChhHHHHH----HHHhcc-CCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhcccC----cCHHHHHH
Q 012577 238 LLPLYAELGKADQVARI----WKLCES-NPWLD----VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK----LSTKHYTA 304 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~----~~~~~~-~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~ 304 (460)
+..++.+ .+.+..- ++.-.. .|... .+..|+......|+.++|...++++...... ++..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333322 221111 12111 2235677888899999999999988754332 23333233
Q ss_pred HHHH--HHhcCCHHHHHHHHHH
Q 012577 305 LLKV--YADHKMLSKGKDLVKQ 324 (460)
Q Consensus 305 li~~--~~~~g~~~~a~~~~~~ 324 (460)
.+.. ....|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3332 3346777777666555
No 489
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.58 E-value=5.6e+02 Score=26.55 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 126 (460)
+......++..+. .++..+++.+++++...|...
T Consensus 245 d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 245 DQTYMVRLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 3334455555444 488888888888888877644
No 490
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=33.37 E-value=65 Score=30.10 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=20.9
Q ss_pred hhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012577 248 ADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (460)
+++-.++++.+.+.........-++.|.+.++++.|.+..++-.
T Consensus 27 ~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~ 70 (428)
T cd00245 27 LEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESI 70 (428)
T ss_pred HHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhh
Confidence 33334444444333222233334555666666666666655543
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.87 E-value=5.5e+02 Score=26.23 Aligned_cols=240 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCC--CChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLD--FIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
+-++|....-.......+.+..=++.....-.-++--..+..|+.+-..+ ..+.+...++-.|....+++...++.+.
T Consensus 147 ~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~ 226 (1226)
T KOG4279|consen 147 MKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVED 226 (1226)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHH
Q ss_pred cccCCCc----------hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHH
Q 012577 86 IPESFRG----------EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEK 155 (460)
Q Consensus 86 ~~~~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~ 155 (460)
+... || ...|...++---+-|+-++|+...-.|.+..-+..+..|.. +-++|+.|.
T Consensus 227 Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl------------~GRIYKDmF- 292 (1226)
T KOG4279|consen 227 LKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCL------------CGRIYKDMF- 292 (1226)
T ss_pred HHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeee------------echhhhhhh-
Q ss_pred cCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 012577 156 ENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235 (460)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (460)
+-+.|-..+..+.|.+.|++.-+. +|+..+--.+...+...|..=+--.-++.+--
T Consensus 293 ------------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~Fens~Elq~Igm---------- 348 (1226)
T KOG4279|consen 293 ------------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEHFENSLELQQIGM---------- 348 (1226)
T ss_pred ------------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhhccchHHHHHHHH----------
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 012577 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 296 (460)
.|-..+++.|.++.....|+. .....+-.-.+++.+|.+.-+.|.+...+
T Consensus 349 -kLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 349 -KLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred -HHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCc
No 492
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.53 E-value=3e+02 Score=23.04 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=14.0
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
+.....+.|+.++|.+.|.++....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344455666666666666665543
No 493
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.43 E-value=4.8e+02 Score=25.41 Aligned_cols=102 Identities=8% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHH
Q 012577 4 PDISIHSTLTKYAEE-GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESY 82 (460)
Q Consensus 4 ~~~~~~~~l~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (460)
+...+...+....+. |...+.+.+..++. ...|+...|+..++.+.... -......-...+......-.-+...++
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~-~~~~~~It~~~V~~llg~~~~~~if~L 264 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMS-AKSDNIISPQVINQMLGLVDSSVIIEF 264 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhh-ccCCCCcCHHHHHHHHCCCCHHHHHHH
Q ss_pred HHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 012577 83 IQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 126 (460)
++.+.. |+.++|+.+++++...|..|
T Consensus 265 ~~ai~~------------------~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 265 VEYIIH------------------RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHHc------------------CCHHHHHHHHHHHHHcCCCH
No 494
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.99 E-value=1.3e+02 Score=28.32 Aligned_cols=113 Identities=13% Similarity=-0.052 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHH
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLL 100 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll 100 (460)
.....+..-+..+.+.+.++.|+.++..+.+.. +.....+..-..++.+.+++..|+.=+.+..+..|+ ...|--=.
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 101 ANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
.++.+.+.+.+|+..|+..... .|+..-+...+.-|
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=31.85 E-value=4.4e+02 Score=24.78 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=52.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH--HHHHHH---HH-----HHccCCHHHHHHHHHHHHh
Q 012577 223 MEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD--VCMAAI---EA-----WGKLNKVEEAEAVFKRMSK 292 (460)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li---~~-----~~~~~~~~~a~~~~~~m~~ 292 (460)
+....+.||.++.+-+.+.++..-..+-...+|+...++.|+. -+.++| ++ -.+...-++++++++.|..
T Consensus 174 LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 174 LDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 3345677888888877777777777777777777666544433 222222 11 1234456678888877765
Q ss_pred cccCcCHHHHHHHHHHHHh
Q 012577 293 TWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 293 ~~~~p~~~~~~~li~~~~~ 311 (460)
.=-.-|+.-+..|...|+.
T Consensus 254 ~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred hcccccchhHHHHHHHHhh
Confidence 4222255556666666653
No 496
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.80 E-value=2.4e+02 Score=29.17 Aligned_cols=127 Identities=19% Similarity=0.113 Sum_probs=65.7
Q ss_pred hcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 244 ELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
..|+++.|++.-+. -.+..+|..|.......|+.+-|+-.|+..+. |..|--.|.-.|+.++..++.+
T Consensus 655 e~gnle~ale~akk---ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKK---LDDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred hcCCHHHHHHHHHh---cCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHH
Confidence 44555555443332 24555666666666666766666666664443 3334444555666666555554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
-.... .|..+ ....-.-.|++++=.+++... |..| ..|-. -...|.-++|.++.++...
T Consensus 723 iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~----g~~~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 723 IAEIR---NDATG---QFQNALYLGDVKERVKILENG----GQLP--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhc----Cccc--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 44332 12211 111112346666666665543 3333 12221 2345777788888887765
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=5.1e+02 Score=27.02 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=79.6
Q ss_pred HHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHH
Q 012577 68 DLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKV 146 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a 146 (460)
..+..+|+++.|++.-.++ .+..+|..|.....++|+.+-|...|++.+.. +.|--.|.-.|+ ++.
T Consensus 651 ~LaLe~gnle~ale~akkl----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKL----DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeehhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHH
Confidence 3455789999999888877 56778999999999999999999999886653 333334445555 333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 147 ADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.++-+.... .-|..+ ......-.|+.++-.++++.. |..| ..|- .-...|.-++|.++.++....
T Consensus 718 ~Km~~iae~---r~D~~~---~~qnalYl~dv~ervkIl~n~---g~~~--layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 718 SKMMKIAEI---RNDATG---QFQNALYLGDVKERVKILENG---GQLP--LAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHh---hhhhHH---HHHHHHHhccHHHHHHHHHhc---Cccc--HHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 332222221 222222 112222367777766666543 3222 1221 123467788899888888763
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.03 E-value=1.2e+02 Score=22.34 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 374 MLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34555666666667777777777776666665555555566666653
No 499
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.95 E-value=3.2e+02 Score=22.87 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCC-------hhhHHHHHHHHHHhCCCCc---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 335 LAWDALVKLHVEGGE-------VEKADSILLKAQQQNKFKP---M-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 335 ~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
..+..+.+.|-..|+ ...|.+.|.+..+...... + ....-.+.....+.|+.++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455566666666 3455566665554432211 1 2233345567788999999999999999765
No 500
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.77 E-value=4.6e+02 Score=24.66 Aligned_cols=37 Identities=11% Similarity=-0.073 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC
Q 012577 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK 313 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 313 (460)
..+.+.|+..+..|.+.|..|....-..++.++..-|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4678888888888888877666555444444444433
Done!