Query 012577
Match_columns 460
No_of_seqs 586 out of 2089
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 12:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-37 1.3E-41 300.5 40.3 411 22-444 82-556 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-36 8E-41 295.0 41.6 420 10-444 105-590 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.7E-29 1.3E-33 230.5 46.1 380 30-420 5-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 8.6E-33 2.9E-37 259.0 21.8 214 181-418 9-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 9E-32 3.1E-36 252.1 24.9 199 148-346 11-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 8.6E-27 2.9E-31 214.7 43.7 368 66-444 5-379 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.8E-24 1.3E-28 204.7 38.7 406 24-440 6-484 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.2E-23 7.4E-28 195.9 39.4 370 21-421 23-441 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 5.4E-23 1.9E-27 193.2 38.1 311 92-412 25-370 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.5E-22 8.5E-27 193.2 36.3 396 24-432 25-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 1E-21 3.4E-26 187.8 35.1 393 8-411 25-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.3E-19 4.5E-24 164.5 40.2 314 62-417 5-352 (359)
13 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.8E-24 174.6 37.7 378 10-400 46-492 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 3.7E-19 1.3E-23 161.5 37.9 330 24-383 3-353 (359)
15 3hym_B Cell division cycle pro 99.9 3.3E-19 1.1E-23 160.0 32.6 288 92-420 21-320 (330)
16 2xm6_A Protein corresponding t 99.9 2E-17 6.7E-22 156.9 46.1 353 22-401 37-434 (490)
17 3hym_B Cell division cycle pro 99.9 9.5E-19 3.3E-23 157.0 31.5 196 58-257 20-218 (330)
18 1fch_A Peroxisomal targeting s 99.9 3E-19 1E-23 163.0 25.9 284 72-394 37-354 (368)
19 2xm6_A Protein corresponding t 99.9 4.5E-16 1.6E-20 147.5 48.3 363 42-434 25-434 (490)
20 2ooe_A Cleavage stimulation fa 99.8 1.5E-16 5.2E-21 152.3 43.0 404 20-431 9-491 (530)
21 1fch_A Peroxisomal targeting s 99.8 2E-18 6.8E-23 157.5 26.5 304 34-360 35-356 (368)
22 4eqf_A PEX5-related protein; a 99.8 5.7E-18 1.9E-22 154.3 24.8 211 161-398 98-309 (365)
23 4eqf_A PEX5-related protein; a 99.8 1.7E-18 5.7E-23 157.9 20.4 266 92-395 64-352 (365)
24 1b89_A Protein (clathrin heavy 99.8 8.1E-19 2.8E-23 157.1 16.3 290 25-356 7-304 (449)
25 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.2E-23 155.9 16.7 263 23-321 31-304 (449)
26 3cv0_A Peroxisome targeting si 99.8 8.6E-17 2.9E-21 144.0 27.5 263 94-395 22-311 (327)
27 3mkr_A Coatomer subunit epsilo 99.8 8.9E-17 3E-21 140.8 26.2 251 68-364 7-265 (291)
28 3spa_A Mtrpol, DNA-directed RN 99.8 2.5E-19 8.4E-24 173.1 10.4 149 93-246 127-286 (1134)
29 2ooe_A Cleavage stimulation fa 99.8 1.1E-14 3.9E-19 139.3 42.1 385 8-399 31-492 (530)
30 3cv0_A Peroxisome targeting si 99.8 7.9E-17 2.7E-21 144.2 25.5 153 172-359 148-311 (327)
31 4g1t_A Interferon-induced prot 99.8 1E-15 3.6E-20 144.4 33.5 354 60-430 51-457 (472)
32 1xi4_A Clathrin heavy chain; a 99.8 9.1E-15 3.1E-19 146.1 40.9 377 8-431 966-1381(1630)
33 3mkr_A Coatomer subunit epsilo 99.8 2.3E-16 8E-21 138.1 25.7 225 164-400 36-265 (291)
34 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-18 3.8E-23 168.6 10.8 152 263-420 126-287 (1134)
35 4g1t_A Interferon-induced prot 99.8 1.5E-15 5.2E-20 143.3 31.3 369 23-408 50-469 (472)
36 3uq3_A Heat shock protein STI1 99.7 1.4E-15 4.8E-20 131.0 24.3 225 162-399 5-236 (258)
37 3u4t_A TPR repeat-containing p 99.7 5.5E-15 1.9E-19 128.5 27.4 251 163-417 4-267 (272)
38 3e4b_A ALGK; tetratricopeptide 99.7 5.8E-15 2E-19 137.8 27.8 346 29-400 8-388 (452)
39 1xi4_A Clathrin heavy chain; a 99.7 1.3E-12 4.5E-17 130.9 43.1 339 30-419 1055-1415(1630)
40 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.7E-18 120.4 31.7 224 161-400 5-252 (273)
41 2pl2_A Hypothetical conserved 99.7 4.5E-15 1.5E-19 124.2 21.9 210 159-396 2-211 (217)
42 2pl2_A Hypothetical conserved 99.7 6.6E-15 2.3E-19 123.2 22.0 188 234-427 7-209 (217)
43 2h6f_A Protein farnesyltransfe 99.7 5.2E-14 1.8E-18 127.4 27.5 248 162-417 97-365 (382)
44 3uq3_A Heat shock protein STI1 99.7 2.8E-14 9.5E-19 122.8 23.3 119 243-363 116-236 (258)
45 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-13 3.8E-18 118.7 26.1 201 162-399 37-238 (252)
46 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-13 7.7E-18 116.8 26.8 205 233-443 38-247 (252)
47 1ouv_A Conserved hypothetical 99.6 9.1E-13 3.1E-17 114.5 30.8 177 175-363 55-251 (273)
48 2q7f_A YRRB protein; TPR, prot 99.6 4.1E-14 1.4E-18 120.6 21.7 202 161-400 22-223 (243)
49 2vq2_A PILW, putative fimbrial 99.6 1.8E-13 6.2E-18 115.0 24.7 202 162-399 8-211 (225)
50 2vq2_A PILW, putative fimbrial 99.6 4.5E-13 1.5E-17 112.6 27.0 206 233-444 9-221 (225)
51 2q7f_A YRRB protein; TPR, prot 99.6 6.4E-14 2.2E-18 119.4 21.9 201 126-363 21-222 (243)
52 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.3E-18 119.9 23.9 175 165-342 77-263 (272)
53 2h6f_A Protein farnesyltransfe 99.6 2.3E-13 7.9E-18 123.1 24.2 246 93-380 97-363 (382)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 8E-14 2.7E-18 121.2 20.5 63 162-225 77-139 (275)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.9E-13 1.3E-17 116.8 24.5 223 173-400 16-245 (275)
56 3sf4_A G-protein-signaling mod 99.6 1.5E-13 5.3E-18 126.7 21.4 298 92-420 8-362 (406)
57 4e6h_A MRNA 3'-END-processing 99.6 1.3E-10 4.3E-15 112.4 41.2 432 10-451 53-585 (679)
58 4a1s_A PINS, partner of inscut 99.6 1.7E-13 5.6E-18 126.8 19.1 271 94-399 49-372 (411)
59 2ond_A Cleavage stimulation fa 99.6 8.4E-12 2.9E-16 110.4 29.1 219 179-400 33-271 (308)
60 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.8E-17 122.4 23.3 322 66-417 9-366 (452)
61 3ro2_A PINS homolog, G-protein 99.5 3.6E-13 1.2E-17 120.6 19.2 274 95-399 7-332 (338)
62 3ulq_A Response regulator aspa 99.5 9.7E-13 3.3E-17 120.4 21.9 228 168-398 109-367 (383)
63 3sf4_A G-protein-signaling mod 99.5 1.3E-12 4.5E-17 120.4 22.4 269 159-428 6-332 (406)
64 4a1s_A PINS, partner of inscut 99.5 4.2E-13 1.4E-17 124.1 18.4 275 61-364 49-373 (411)
65 3ulq_A Response regulator aspa 99.5 1.7E-12 5.8E-17 118.8 22.0 303 23-362 8-367 (383)
66 2ond_A Cleavage stimulation fa 99.5 2.1E-11 7E-16 107.9 27.7 186 179-366 81-273 (308)
67 3ro2_A PINS homolog, G-protein 99.5 1.9E-12 6.5E-17 115.9 20.5 268 163-431 6-331 (338)
68 4abn_A Tetratricopeptide repea 99.5 1.8E-12 6E-17 121.8 20.8 195 196-395 101-317 (474)
69 3vtx_A MAMA; tetratricopeptide 99.5 6.9E-12 2.4E-16 101.8 21.6 129 266-398 41-169 (184)
70 3vtx_A MAMA; tetratricopeptide 99.5 7.4E-12 2.5E-16 101.6 21.5 166 161-362 4-169 (184)
71 3nf1_A KLC 1, kinesin light ch 99.5 4E-13 1.4E-17 119.0 13.8 237 161-399 26-307 (311)
72 4abn_A Tetratricopeptide repea 99.5 3.5E-12 1.2E-16 119.8 20.0 211 144-359 85-317 (474)
73 4e6h_A MRNA 3'-END-processing 99.5 2.5E-09 8.4E-14 103.4 38.9 404 7-416 84-585 (679)
74 3q15_A PSP28, response regulat 99.4 1.5E-10 5.3E-15 105.5 27.4 228 167-398 106-364 (378)
75 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 1E-16 113.4 13.9 96 163-258 112-221 (311)
76 3q15_A PSP28, response regulat 99.4 2.8E-10 9.6E-15 103.8 25.1 307 24-362 9-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.4 2.7E-10 9.4E-15 92.1 21.7 161 235-399 11-173 (186)
78 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.6E-15 94.0 19.5 163 165-363 11-173 (186)
79 1hz4_A MALT regulatory protein 99.3 1.6E-09 5.6E-14 98.5 28.6 198 165-362 96-321 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.1E-15 113.2 21.0 164 163-362 10-173 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-10 3.7E-15 114.2 19.8 163 127-292 8-173 (723)
82 1hz4_A MALT regulatory protein 99.3 3E-09 1E-13 96.7 27.1 290 137-432 23-349 (373)
83 4i17_A Hypothetical protein; T 99.3 4.1E-10 1.4E-14 94.7 19.4 98 161-259 6-103 (228)
84 4i17_A Hypothetical protein; T 99.3 8.3E-10 2.8E-14 92.8 20.7 206 194-411 4-220 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.7E-15 101.6 14.1 226 174-399 13-281 (283)
86 3mv2_B Coatomer subunit epsilo 99.2 2.3E-08 7.8E-13 86.0 26.9 252 169-444 20-292 (310)
87 3edt_B KLC 2, kinesin light ch 99.2 4.2E-10 1.4E-14 97.8 16.1 224 207-431 11-280 (283)
88 1qqe_A Vesicular transport pro 99.2 1E-09 3.5E-14 96.1 18.5 157 206-362 46-227 (292)
89 3mv2_B Coatomer subunit epsilo 99.2 3.7E-08 1.3E-12 84.6 25.6 179 181-364 85-283 (310)
90 1qqe_A Vesicular transport pro 99.1 4.3E-08 1.5E-12 85.7 26.1 215 179-416 2-249 (292)
91 2fo7_A Synthetic consensus TPR 99.1 7.9E-09 2.7E-13 78.4 18.3 131 266-400 3-133 (136)
92 3dra_A Protein farnesyltransfe 99.1 4.1E-07 1.4E-11 79.0 28.6 229 179-412 50-300 (306)
93 3urz_A Uncharacterized protein 99.1 3.4E-09 1.2E-13 87.6 14.8 172 24-202 4-195 (208)
94 3rjv_A Putative SEL1 repeat pr 99.1 3.8E-08 1.3E-12 81.5 21.0 137 146-292 5-157 (212)
95 4ga2_A E3 SUMO-protein ligase 99.1 1.4E-09 4.8E-14 84.6 11.6 144 272-420 5-149 (150)
96 2fo7_A Synthetic consensus TPR 99.1 1.7E-08 5.8E-13 76.5 17.6 124 238-363 7-132 (136)
97 3qky_A Outer membrane assembly 99.1 2.4E-08 8.4E-13 85.7 20.0 188 194-400 12-225 (261)
98 3rjv_A Putative SEL1 repeat pr 99.1 3.9E-08 1.3E-12 81.4 20.4 176 180-400 4-198 (212)
99 3qky_A Outer membrane assembly 99.1 3.2E-08 1.1E-12 85.0 20.5 188 159-365 12-226 (261)
100 2uy1_A Cleavage stimulation fa 99.0 3.2E-07 1.1E-11 86.0 27.7 360 37-430 7-411 (493)
101 3urz_A Uncharacterized protein 99.0 1.7E-08 5.8E-13 83.3 16.8 132 238-375 60-195 (208)
102 3dra_A Protein farnesyltransfe 99.0 2.8E-07 9.7E-12 80.0 25.1 215 144-362 50-286 (306)
103 2uy1_A Cleavage stimulation fa 99.0 1.3E-06 4.5E-11 81.9 31.5 354 25-398 16-412 (493)
104 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.9E-13 81.9 15.2 161 61-224 7-171 (176)
105 2r5s_A Uncharacterized protein 99.0 1.6E-08 5.6E-13 81.0 16.1 158 237-397 11-171 (176)
106 3qou_A Protein YBBN; thioredox 99.0 1.6E-08 5.6E-13 88.0 17.1 164 58-224 115-282 (287)
107 2pzi_A Probable serine/threoni 99.0 1.6E-08 5.5E-13 99.3 18.4 172 173-349 402-583 (681)
108 3qou_A Protein YBBN; thioredox 99.0 2.4E-08 8.3E-13 86.9 17.5 163 195-359 115-280 (287)
109 2ifu_A Gamma-SNAP; membrane fu 99.0 8.6E-08 2.9E-12 84.4 20.3 171 175-361 29-222 (307)
110 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.5E-08 2.6E-12 80.5 19.0 186 196-400 3-214 (225)
111 4ga2_A E3 SUMO-protein ligase 99.0 9.1E-09 3.1E-13 80.0 12.0 143 239-385 4-149 (150)
112 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.1E-07 3.7E-12 79.6 19.4 185 161-364 3-214 (225)
113 2pzi_A Probable serine/threoni 98.9 1.4E-08 4.8E-13 99.7 15.8 171 208-385 402-583 (681)
114 2vsy_A XCC0866; transferase, g 98.9 3.9E-08 1.3E-12 94.7 18.8 153 210-365 2-159 (568)
115 2vsy_A XCC0866; transferase, g 98.9 3.8E-08 1.3E-12 94.9 17.8 150 176-328 3-157 (568)
116 3u3w_A Transcriptional activat 98.9 1.2E-06 4.2E-11 76.5 23.8 160 239-398 82-265 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4.2E-07 1.4E-11 75.1 19.5 128 268-400 10-151 (213)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 4E-07 1.4E-11 80.1 20.2 216 174-420 3-247 (307)
119 1a17_A Serine/threonine protei 98.8 1.9E-07 6.4E-12 73.7 16.3 131 266-398 15-145 (166)
120 3u3w_A Transcriptional activat 98.8 3.3E-07 1.1E-11 80.0 18.9 95 164-258 157-263 (293)
121 4gco_A Protein STI-1; structur 98.8 4.4E-07 1.5E-11 67.9 15.5 108 300-411 14-121 (126)
122 3q7a_A Farnesyltransferase alp 98.8 2.9E-05 9.8E-10 68.2 29.0 240 144-412 71-344 (349)
123 3gw4_A Uncharacterized protein 98.8 1.7E-07 5.9E-12 76.8 14.0 132 267-398 29-175 (203)
124 2qfc_A PLCR protein; TPR, HTH, 98.8 1.6E-06 5.4E-11 75.7 20.8 28 199-226 77-104 (293)
125 1na0_A Designed protein CTPR3; 98.8 8.3E-07 2.8E-11 65.9 16.5 115 299-417 9-123 (125)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1E-06 3.4E-11 72.8 18.3 128 63-228 9-152 (213)
127 2qfc_A PLCR protein; TPR, HTH, 98.7 1E-06 3.5E-11 76.9 18.6 95 163-257 156-262 (293)
128 2lni_A Stress-induced-phosphop 98.7 6.3E-07 2.2E-11 67.5 15.1 118 298-419 15-132 (133)
129 3q7a_A Farnesyltransferase alp 98.7 1.9E-05 6.3E-10 69.4 25.5 237 96-362 57-330 (349)
130 2c2l_A CHIP, carboxy terminus 98.7 2.2E-07 7.6E-12 80.5 13.3 194 23-226 3-199 (281)
131 2vyi_A SGTA protein; chaperone 98.7 1.4E-06 4.8E-11 65.2 16.1 119 298-420 11-129 (131)
132 4gco_A Protein STI-1; structur 98.7 1.2E-06 4.2E-11 65.4 15.2 97 266-364 15-111 (126)
133 3gw4_A Uncharacterized protein 98.7 8.8E-07 3E-11 72.4 15.3 158 173-362 3-175 (203)
134 2vgx_A Chaperone SYCD; alterna 98.7 3.4E-07 1.2E-11 70.7 11.9 99 298-399 20-118 (148)
135 2vgx_A Chaperone SYCD; alterna 98.7 3.6E-07 1.2E-11 70.6 12.0 105 263-369 20-124 (148)
136 3gyz_A Chaperone protein IPGC; 98.6 8.9E-07 3E-11 68.4 13.8 96 266-363 38-133 (151)
137 3gyz_A Chaperone protein IPGC; 98.6 1.3E-07 4.4E-12 73.1 8.9 100 298-400 35-134 (151)
138 1na0_A Designed protein CTPR3; 98.6 2.6E-06 8.9E-11 63.1 16.1 115 264-382 9-123 (125)
139 2e2e_A Formate-dependent nitri 98.6 6.3E-07 2.1E-11 71.7 13.2 121 276-400 22-145 (177)
140 1a17_A Serine/threonine protei 98.6 2E-06 6.9E-11 67.6 15.9 23 269-291 86-108 (166)
141 3dss_A Geranylgeranyl transfer 98.6 7.8E-05 2.7E-09 65.1 26.9 195 213-415 90-319 (331)
142 2c2l_A CHIP, carboxy terminus 98.6 2.3E-07 8E-12 80.4 11.1 190 198-398 5-198 (281)
143 2vyi_A SGTA protein; chaperone 98.6 2.8E-06 9.4E-11 63.6 15.2 118 265-386 13-130 (131)
144 2lni_A Stress-induced-phosphop 98.6 2.5E-06 8.6E-11 64.1 14.7 118 263-384 15-132 (133)
145 2e2e_A Formate-dependent nitri 98.6 1.9E-06 6.4E-11 68.8 14.4 120 244-365 22-146 (177)
146 4f3v_A ESX-1 secretion system 98.6 2.6E-06 8.8E-11 72.3 15.6 127 269-399 107-237 (282)
147 3sz7_A HSC70 cochaperone (SGT) 98.5 2.6E-06 8.9E-11 67.0 14.6 103 265-369 12-114 (164)
148 4gcn_A Protein STI-1; structur 98.5 3.6E-06 1.2E-10 62.9 14.5 107 300-409 9-120 (127)
149 1p5q_A FKBP52, FK506-binding p 98.5 3.4E-06 1.2E-10 75.1 16.8 131 264-397 147-292 (336)
150 1elw_A TPR1-domain of HOP; HOP 98.5 5.4E-06 1.8E-10 60.7 15.3 109 299-411 4-112 (118)
151 2xcb_A PCRH, regulatory protei 98.5 2.9E-06 1E-10 64.9 14.2 95 267-363 21-115 (142)
152 4f3v_A ESX-1 secretion system 98.5 9.5E-06 3.2E-10 68.8 18.2 125 202-328 107-237 (282)
153 2xcb_A PCRH, regulatory protei 98.5 1.4E-06 4.9E-11 66.7 11.9 100 298-400 17-116 (142)
154 1p5q_A FKBP52, FK506-binding p 98.5 4E-06 1.4E-10 74.7 15.4 137 197-353 147-283 (336)
155 3upv_A Heat shock protein STI1 98.4 1.2E-05 4E-10 59.9 15.2 97 300-399 5-101 (126)
156 2fbn_A 70 kDa peptidylprolyl i 98.4 6.5E-07 2.2E-11 73.1 8.8 96 266-362 40-150 (198)
157 4b4t_Q 26S proteasome regulato 98.4 8.8E-06 3E-10 75.3 17.5 124 274-397 105-243 (434)
158 3dss_A Geranylgeranyl transfer 98.4 0.00028 9.5E-09 61.7 25.5 248 93-365 26-306 (331)
159 2fbn_A 70 kDa peptidylprolyl i 98.4 9.7E-07 3.3E-11 72.0 9.6 144 272-420 12-171 (198)
160 4b4t_Q 26S proteasome regulato 98.4 2.3E-05 7.9E-10 72.5 19.5 191 137-327 13-244 (434)
161 2kck_A TPR repeat; tetratricop 98.4 4.4E-06 1.5E-10 60.5 11.7 99 300-399 7-106 (112)
162 4gcn_A Protein STI-1; structur 98.4 1E-05 3.5E-10 60.4 13.8 97 266-363 10-112 (127)
163 3q49_B STIP1 homology and U bo 98.4 1.4E-05 4.8E-10 60.4 14.8 99 298-399 8-106 (137)
164 2kck_A TPR repeat; tetratricop 98.4 6.5E-06 2.2E-10 59.6 12.4 100 264-365 6-108 (112)
165 1elw_A TPR1-domain of HOP; HOP 98.4 2E-05 6.9E-10 57.5 15.3 98 265-364 5-102 (118)
166 3upv_A Heat shock protein STI1 98.4 1.8E-05 6.2E-10 58.9 15.1 97 266-364 6-102 (126)
167 3sz7_A HSC70 cochaperone (SGT) 98.4 1.1E-05 3.8E-10 63.3 14.2 100 298-400 10-109 (164)
168 2dba_A Smooth muscle cell asso 98.4 2.2E-05 7.4E-10 60.2 15.6 108 298-410 27-138 (148)
169 3q49_B STIP1 homology and U bo 98.4 1.2E-05 4.1E-10 60.8 13.9 100 263-364 8-107 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.4 1.2E-05 4.2E-10 59.9 13.7 112 300-414 5-121 (131)
171 3ro3_A PINS homolog, G-protein 98.3 9.8E-06 3.4E-10 63.1 13.1 134 266-399 11-158 (164)
172 1elr_A TPR2A-domain of HOP; HO 98.3 9.7E-06 3.3E-10 60.5 12.1 108 266-377 6-119 (131)
173 3k9i_A BH0479 protein; putativ 98.3 2E-06 6.9E-11 63.3 7.8 88 277-365 3-92 (117)
174 1hxi_A PEX5, peroxisome target 98.3 9.4E-06 3.2E-10 60.0 10.6 95 302-399 20-114 (121)
175 2dba_A Smooth muscle cell asso 98.3 6.6E-05 2.3E-09 57.4 15.8 61 301-362 67-127 (148)
176 1hxi_A PEX5, peroxisome target 98.2 2.1E-05 7.2E-10 58.1 11.6 97 266-364 19-115 (121)
177 1wao_1 Serine/threonine protei 98.2 7.6E-06 2.6E-10 76.5 11.1 119 272-394 14-134 (477)
178 2xev_A YBGF; tetratricopeptide 98.2 0.00013 4.4E-09 54.3 16.0 94 305-399 8-105 (129)
179 2xev_A YBGF; tetratricopeptide 98.2 8.1E-05 2.8E-09 55.4 14.7 94 269-364 7-106 (129)
180 3ro3_A PINS homolog, G-protein 98.2 4E-05 1.4E-09 59.6 13.1 23 338-360 133-155 (164)
181 3rkv_A Putative peptidylprolyl 98.1 3.1E-05 1.1E-09 60.6 12.0 65 334-400 63-127 (162)
182 1wao_1 Serine/threonine protei 98.1 2.7E-05 9.3E-10 72.8 13.1 116 171-288 15-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 8.8E-05 3E-09 69.0 15.5 130 265-397 269-413 (457)
184 3rkv_A Putative peptidylprolyl 98.1 0.00012 4.3E-09 57.1 14.1 97 267-364 14-127 (162)
185 1ihg_A Cyclophilin 40; ppiase 98.0 8.3E-05 2.8E-09 66.9 14.0 120 267-389 226-360 (370)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8.2E-05 2.8E-09 69.2 13.7 138 197-354 268-405 (457)
187 3k9i_A BH0479 protein; putativ 98.0 2.3E-05 7.7E-10 57.5 7.7 104 311-416 2-108 (117)
188 2kat_A Uncharacterized protein 98.0 5.1E-05 1.7E-09 55.3 9.2 80 282-363 3-82 (115)
189 1ihg_A Cyclophilin 40; ppiase 97.9 9.9E-05 3.4E-09 66.4 12.6 94 164-258 225-333 (370)
190 1dce_A Protein (RAB geranylger 97.9 0.00094 3.2E-08 63.7 19.6 170 179-352 46-244 (567)
191 1dce_A Protein (RAB geranylger 97.9 0.00063 2.2E-08 64.9 18.4 170 144-317 46-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 6.3E-05 2.2E-09 66.9 10.9 145 163-327 180-327 (338)
193 1klx_A Cysteine rich protein B 97.9 0.00013 4.6E-09 55.1 11.2 108 177-292 10-125 (138)
194 3n71_A Histone lysine methyltr 97.9 7.2E-05 2.5E-09 69.6 11.4 94 234-327 353-463 (490)
195 2hr2_A Hypothetical protein; a 97.9 0.00026 8.9E-09 54.1 12.5 61 267-327 14-85 (159)
196 2if4_A ATFKBP42; FKBP-like, al 97.9 5.1E-05 1.8E-09 67.5 9.2 95 301-398 232-327 (338)
197 1klx_A Cysteine rich protein B 97.8 0.00044 1.5E-08 52.2 12.9 110 212-329 10-127 (138)
198 2l6j_A TPR repeat-containing p 97.8 3.5E-05 1.2E-09 55.6 6.1 94 161-255 3-101 (111)
199 2hr2_A Hypothetical protein; a 97.8 0.00068 2.3E-08 51.8 12.8 100 300-399 12-131 (159)
200 3n71_A Histone lysine methyltr 97.8 0.00019 6.4E-09 66.8 11.4 119 244-362 321-463 (490)
201 3ma5_A Tetratricopeptide repea 97.7 0.00021 7.2E-09 50.5 8.9 63 299-362 7-69 (100)
202 1na3_A Designed protein CTPR2; 97.7 0.00055 1.9E-08 47.0 11.0 80 335-417 10-89 (91)
203 2kat_A Uncharacterized protein 97.7 0.00044 1.5E-08 50.2 10.4 76 180-257 3-78 (115)
204 1na3_A Designed protein CTPR2; 97.6 0.0006 2E-08 46.8 10.1 81 162-244 9-89 (91)
205 2l6j_A TPR repeat-containing p 97.6 0.00073 2.5E-08 48.4 10.5 63 335-399 5-67 (111)
206 3ma5_A Tetratricopeptide repea 97.5 0.00049 1.7E-08 48.5 8.0 65 160-225 5-69 (100)
207 1zu2_A Mitochondrial import re 97.4 0.00041 1.4E-08 52.9 7.1 99 34-136 12-132 (158)
208 1zu2_A Mitochondrial import re 97.4 0.00057 2E-08 52.1 7.9 68 278-347 16-93 (158)
209 3ly7_A Transcriptional activat 97.2 0.043 1.5E-06 48.2 18.5 74 331-409 274-347 (372)
210 3qww_A SET and MYND domain-con 96.9 0.0052 1.8E-07 56.2 9.8 62 266-327 342-410 (433)
211 3qwp_A SET and MYND domain-con 96.8 0.0047 1.6E-07 56.5 9.3 96 26-121 289-399 (429)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0038 1.3E-07 43.6 6.8 55 273-328 9-64 (99)
213 3ly7_A Transcriptional activat 96.8 0.035 1.2E-06 48.8 14.0 141 57-201 191-347 (372)
214 3qww_A SET and MYND domain-con 96.7 0.0065 2.2E-07 55.5 9.6 87 312-398 311-410 (433)
215 2kc7_A BFR218_protein; tetratr 96.7 0.017 5.9E-07 40.0 9.7 60 305-365 6-66 (99)
216 3bee_A Putative YFRE protein; 96.7 0.032 1.1E-06 38.3 10.5 67 332-400 4-73 (93)
217 3qwp_A SET and MYND domain-con 96.6 0.011 3.7E-07 54.1 10.4 62 266-327 331-399 (429)
218 2v5f_A Prolyl 4-hydroxylase su 96.6 0.025 8.7E-07 39.8 10.3 67 333-399 4-75 (104)
219 3bee_A Putative YFRE protein; 96.5 0.051 1.7E-06 37.3 10.9 67 298-365 5-74 (93)
220 3mkq_A Coatomer beta'-subunit; 96.5 0.16 5.4E-06 50.9 19.0 94 24-143 629-722 (814)
221 3mkq_A Coatomer beta'-subunit; 96.5 0.06 2E-06 54.0 15.4 45 243-290 663-707 (814)
222 1pc2_A Mitochondria fission pr 96.4 0.049 1.7E-06 41.0 10.9 81 281-363 15-100 (152)
223 4h7y_A Dual specificity protei 96.1 0.28 9.5E-06 36.5 13.9 117 298-418 12-141 (161)
224 1pc2_A Mitochondria fission pr 96.0 0.19 6.4E-06 37.8 12.1 83 315-400 14-101 (152)
225 3mkq_B Coatomer subunit alpha; 95.8 0.32 1.1E-05 37.6 12.9 43 209-257 17-59 (177)
226 3u64_A Protein TP_0956; tetrat 95.7 0.77 2.7E-05 38.8 16.4 89 144-234 180-279 (301)
227 2v5f_A Prolyl 4-hydroxylase su 95.7 0.037 1.3E-06 39.0 6.9 33 21-53 2-34 (104)
228 3mkq_B Coatomer subunit alpha; 95.7 0.54 1.9E-05 36.3 14.6 100 242-359 15-114 (177)
229 1wy6_A Hypothetical protein ST 95.7 0.41 1.4E-05 34.9 13.7 34 159-192 122-155 (172)
230 1nzn_A CGI-135 protein, fissio 95.2 0.19 6.6E-06 36.3 9.3 80 282-363 19-103 (126)
231 3u64_A Protein TP_0956; tetrat 95.1 0.23 7.8E-06 41.9 10.8 63 336-399 201-269 (301)
232 1wy6_A Hypothetical protein ST 95.1 0.64 2.2E-05 33.9 14.6 67 162-229 91-157 (172)
233 4ady_A RPN2, 26S proteasome re 94.9 3.4 0.00012 41.3 26.3 150 207-361 500-656 (963)
234 4b4t_P 26S proteasome regulato 94.0 3.7 0.00013 37.6 19.7 94 269-362 142-246 (445)
235 4h7y_A Dual specificity protei 93.9 1.5 5.1E-05 32.7 11.7 100 262-363 11-123 (161)
236 4gns_B Protein CSD3, chitin bi 93.9 0.34 1.2E-05 47.3 10.3 128 96-224 251-398 (754)
237 1nzn_A CGI-135 protein, fissio 93.7 1 3.5E-05 32.5 10.1 85 313-400 15-104 (126)
238 4b4t_P 26S proteasome regulato 93.3 4.7 0.00016 36.9 19.0 97 302-398 140-246 (445)
239 3lpz_A GET4 (YOR164C homolog); 93.1 4 0.00014 35.3 16.8 110 63-185 38-159 (336)
240 3lvg_A Clathrin heavy chain 1; 92.8 0.00093 3.2E-08 60.1 -8.3 192 59-277 82-276 (624)
241 4gns_B Protein CSD3, chitin bi 92.1 1.2 4.2E-05 43.5 11.3 49 346-396 349-397 (754)
242 2ff4_A Probable regulatory pro 91.8 0.81 2.8E-05 41.1 9.2 195 23-235 32-248 (388)
243 1v54_E Cytochrome C oxidase po 91.7 2.2 7.6E-05 29.2 9.0 46 282-327 28-73 (109)
244 2ff4_A Probable regulatory pro 91.7 1 3.5E-05 40.4 9.8 71 335-407 172-247 (388)
245 4fhn_B Nucleoporin NUP120; pro 90.2 20 0.00068 37.5 20.1 167 65-250 817-989 (1139)
246 2uwj_G Type III export protein 89.8 3.4 0.00012 28.1 10.6 90 35-132 17-106 (115)
247 4fhn_B Nucleoporin NUP120; pro 89.7 12 0.00042 39.0 17.0 169 26-216 814-990 (1139)
248 2p58_C Putative type III secre 89.7 3.5 0.00012 28.1 11.1 90 35-132 18-107 (116)
249 1v54_E Cytochrome C oxidase po 89.6 3.6 0.00012 28.1 9.1 48 213-260 26-73 (109)
250 3o48_A Mitochondria fission 1 89.5 4.6 0.00016 29.3 9.5 73 19-92 35-110 (134)
251 2wpv_A GET4, UPF0363 protein Y 89.2 10 0.00034 32.6 24.0 110 164-288 35-158 (312)
252 2y69_E Cytochrome C oxidase su 89.0 4.6 0.00016 29.3 9.0 60 281-341 70-129 (152)
253 3ffl_A Anaphase-promoting comp 88.9 1.7 5.8E-05 33.0 7.2 28 371-398 123-150 (167)
254 4ady_A RPN2, 26S proteasome re 88.8 21 0.00072 35.9 32.7 243 172-420 384-643 (963)
255 3lvg_A Clathrin heavy chain 1; 88.4 0.017 5.8E-07 52.2 -4.5 223 92-347 53-276 (624)
256 1y8m_A FIS1; mitochondria, unk 88.2 6.2 0.00021 29.1 9.9 68 21-89 36-106 (144)
257 3lpz_A GET4 (YOR164C homolog); 87.9 13 0.00043 32.2 21.9 167 95-292 37-215 (336)
258 3o48_A Mitochondria fission 1 87.6 6.4 0.00022 28.6 10.8 69 295-363 36-107 (134)
259 1qsa_A Protein (soluble lytic 87.4 21 0.00071 34.2 33.8 268 45-327 57-347 (618)
260 3txn_A 26S proteasome regulato 86.7 17 0.00058 32.4 19.5 242 198-444 20-295 (394)
261 3eiq_C Programmed cell death p 86.4 8.9 0.0003 33.6 11.4 66 267-333 220-287 (358)
262 2y69_E Cytochrome C oxidase su 86.2 7.9 0.00027 28.2 9.1 47 214-260 70-116 (152)
263 3ffl_A Anaphase-promoting comp 86.2 3.7 0.00013 31.2 7.7 26 26-51 65-90 (167)
264 3ltm_A Alpha-REP4; protein eng 85.1 13 0.00043 29.5 19.9 91 127-225 94-184 (211)
265 2p58_C Putative type III secre 84.7 6.7 0.00023 26.7 7.4 76 144-227 24-99 (116)
266 1qsa_A Protein (soluble lytic 84.4 29 0.001 33.1 30.3 200 107-322 228-436 (618)
267 2uwj_G Type III export protein 83.3 6.4 0.00022 26.8 6.8 77 144-228 23-99 (115)
268 1zbp_A Hypothetical protein VP 83.1 3.7 0.00013 34.1 7.0 58 32-91 5-62 (273)
269 2nsz_A Programmed cell death p 82.7 12 0.0004 27.2 9.3 65 63-127 10-77 (129)
270 4b4t_R RPN7, 26S proteasome re 81.7 22 0.00075 32.3 12.5 58 268-325 135-194 (429)
271 3eiq_C Programmed cell death p 81.3 14 0.00048 32.4 10.4 62 235-296 220-285 (358)
272 1zbp_A Hypothetical protein VP 81.0 6 0.0002 32.9 7.5 57 170-227 5-61 (273)
273 2ion_A PDCD4, programmed cell 80.4 9.6 0.00033 28.6 8.0 65 63-127 12-79 (152)
274 1y8m_A FIS1; mitochondria, unk 79.5 16 0.00056 26.9 12.6 68 296-363 36-106 (144)
275 1wdy_A 2-5A-dependent ribonucl 78.8 4.9 0.00017 33.7 6.9 20 313-332 193-212 (285)
276 3esl_A Checkpoint serine/threo 78.6 22 0.00077 28.0 9.9 56 348-403 93-148 (202)
277 4b4t_R RPN7, 26S proteasome re 74.8 41 0.0014 30.4 12.1 59 199-257 133-193 (429)
278 2wpv_A GET4, UPF0363 protein Y 72.3 46 0.0016 28.5 22.8 81 195-291 132-215 (312)
279 3ltm_A Alpha-REP4; protein eng 71.2 36 0.0012 26.8 19.0 108 160-276 93-200 (211)
280 3t8k_A Uncharacterized protein 66.7 40 0.0014 26.1 9.0 127 69-196 12-148 (186)
281 1wdy_A 2-5A-dependent ribonucl 66.4 20 0.0007 29.7 7.9 52 30-86 8-62 (285)
282 3esl_A Checkpoint serine/threo 65.1 49 0.0017 26.1 9.0 51 76-126 95-148 (202)
283 2nsz_A Programmed cell death p 64.8 37 0.0013 24.5 8.7 64 267-331 10-75 (129)
284 1n11_A Ankyrin; clathrin, BAND 64.2 81 0.0028 28.3 12.0 205 30-257 17-234 (437)
285 3txn_A 26S proteasome regulato 64.0 80 0.0027 28.1 24.2 239 162-406 19-290 (394)
286 3eu9_A Huntingtin-interacting 63.8 17 0.00059 29.2 6.7 16 70-85 16-31 (240)
287 2ion_A PDCD4, programmed cell 63.5 32 0.0011 25.7 7.4 63 267-330 12-76 (152)
288 3ltj_A Alpharep-4; protein eng 63.1 51 0.0018 25.6 20.1 82 20-108 24-105 (201)
289 4fjo_A DNA repair protein REV1 62.8 27 0.00092 23.7 6.2 49 4-52 10-61 (97)
290 1wty_A Hypothetical protein TT 62.7 34 0.0012 24.3 7.1 12 280-291 4-15 (119)
291 4a1g_A Mitotic checkpoint seri 62.3 46 0.0016 24.8 9.0 53 351-403 82-134 (152)
292 4g8k_A 2-5A-dependent ribonucl 62.1 73 0.0025 27.3 10.8 54 28-86 26-82 (337)
293 2fe3_A Peroxide operon regulat 61.0 47 0.0016 24.5 8.4 67 8-76 6-72 (145)
294 1q02_A Sequestosome 1; helical 59.9 14 0.00048 21.4 3.6 42 4-47 6-47 (52)
295 3ltj_A Alpharep-4; protein eng 58.9 61 0.0021 25.1 18.7 141 59-212 27-167 (201)
296 3hra_A Ankyrin repeat family p 57.5 35 0.0012 26.4 7.3 15 71-85 13-27 (201)
297 2d2s_A Exocyst complex compone 57.4 45 0.0015 27.2 7.8 86 168-256 24-115 (235)
298 4ets_A Ferric uptake regulatio 57.2 40 0.0014 25.5 7.1 36 326-362 25-60 (162)
299 4a1g_A Mitotic checkpoint seri 56.9 59 0.002 24.3 11.6 29 95-123 103-131 (152)
300 3kea_A K1L; tropism, ANK repea 56.4 29 0.00099 29.1 6.9 13 322-334 211-223 (285)
301 1oyz_A Hypothetical protein YI 55.8 87 0.003 25.9 24.0 124 159-293 139-263 (280)
302 2zu6_B Programmed cell death p 55.5 57 0.0019 27.9 8.4 23 97-119 170-192 (307)
303 2keb_A DNA polymerase subunit 55.4 45 0.0015 22.5 6.6 58 387-444 26-88 (101)
304 3t8k_A Uncharacterized protein 55.3 52 0.0018 25.4 7.8 92 243-334 14-109 (186)
305 2wvi_A Mitotic checkpoint seri 55.1 66 0.0023 24.4 9.2 51 353-403 79-129 (164)
306 4aez_C MAD3, mitotic spindle c 52.7 80 0.0027 25.4 8.2 53 351-403 131-183 (223)
307 3vu7_H DNA repair protein REV1 52.4 35 0.0012 24.5 5.5 47 6-52 39-88 (124)
308 1k1a_A B-cell lymphoma 3-encod 50.8 92 0.0032 24.7 9.5 54 31-85 13-68 (241)
309 3hra_A Ankyrin repeat family p 50.1 44 0.0015 25.8 6.8 82 31-117 9-93 (201)
310 4ets_A Ferric uptake regulatio 48.1 86 0.0029 23.6 7.6 65 10-76 19-85 (162)
311 2b7e_A PRE-mRNA processing pro 47.7 22 0.00075 21.5 3.2 29 351-380 3-31 (59)
312 3eu9_A Huntingtin-interacting 47.2 32 0.0011 27.5 5.6 177 65-257 44-232 (240)
313 2rg8_A Programmed cell death p 46.7 93 0.0032 23.6 7.8 25 64-88 14-38 (165)
314 2fe3_A Peroxide operon regulat 46.0 86 0.003 23.0 7.7 41 379-419 30-70 (145)
315 2xig_A Ferric uptake regulatio 45.7 81 0.0028 23.4 7.1 65 10-76 13-77 (150)
316 3bu8_A Telomeric repeat-bindin 45.3 1.1E+02 0.0039 24.3 8.3 20 342-361 122-141 (235)
317 3eyy_A Putative iron uptake re 45.1 77 0.0026 23.3 6.8 41 378-419 26-66 (145)
318 2rfa_A Transient receptor pote 45.0 94 0.0032 24.6 8.2 24 205-228 159-182 (232)
319 2w57_A Ferric uptake regulatio 45.0 71 0.0024 23.7 6.7 64 11-76 4-68 (150)
320 1n11_A Ankyrin; clathrin, BAND 44.9 58 0.002 29.2 7.5 207 65-288 16-233 (437)
321 2d2s_A Exocyst complex compone 43.5 1.3E+02 0.0045 24.4 10.0 94 26-120 20-118 (235)
322 4gq2_M Nucleoporin NUP120; bet 42.9 2E+02 0.0068 29.3 11.5 108 305-419 816-950 (950)
323 3eyy_A Putative iron uptake re 42.4 1E+02 0.0034 22.7 7.1 62 12-76 7-68 (145)
324 2fu4_A Ferric uptake regulatio 42.2 66 0.0023 20.6 6.9 63 12-76 5-68 (83)
325 1k1a_A B-cell lymphoma 3-encod 41.3 97 0.0033 24.6 7.7 20 104-123 17-36 (241)
326 3e3v_A Regulatory protein RECX 40.6 1.2E+02 0.0042 23.2 9.5 50 281-331 50-99 (177)
327 2rfa_A Transient receptor pote 40.5 1.3E+02 0.0046 23.6 8.9 179 31-223 7-220 (232)
328 1s6c_A KV4 potassium channel-i 40.4 1.2E+02 0.004 22.9 10.9 43 144-188 140-182 (183)
329 1mzb_A Ferric uptake regulatio 38.9 1.1E+02 0.0037 22.1 7.3 62 13-76 7-69 (136)
330 3bu8_A Telomeric repeat-bindin 38.8 90 0.0031 24.8 6.3 23 100-122 121-143 (235)
331 2lbf_B 60S acidic ribosomal pr 38.6 55 0.0019 20.6 4.2 51 407-459 5-56 (70)
332 3kae_A CDC27, possible protein 38.5 1.3E+02 0.0045 23.0 7.3 52 171-222 71-139 (242)
333 4gq2_M Nucleoporin NUP120; bet 38.3 3.4E+02 0.012 27.6 12.7 46 130-175 899-949 (950)
334 1ug3_A EIF4GI, eukaryotic prot 36.5 2.1E+02 0.0072 24.7 10.6 63 63-125 14-78 (339)
335 4b4t_S RPN3, 26S proteasome re 36.4 2.7E+02 0.0091 25.9 12.2 65 162-226 231-299 (523)
336 2xig_A Ferric uptake regulatio 36.2 1.3E+02 0.0044 22.2 7.7 60 290-350 18-77 (150)
337 2jul_A Calsenilin; EF-hand, ca 35.2 1.5E+02 0.005 24.2 7.9 143 8-152 93-254 (256)
338 3jxi_A Vanilloid receptor-rela 35.2 63 0.0021 26.3 5.6 55 30-85 8-71 (260)
339 3kea_A K1L; tropism, ANK repea 34.6 2E+02 0.0067 23.8 9.1 20 66-85 34-53 (285)
340 3b7b_A Euchromatic histone-lys 34.6 55 0.0019 26.1 5.1 20 66-85 14-33 (237)
341 1jog_A Hypothetical protein HI 33.8 48 0.0017 24.5 4.1 28 334-362 77-104 (146)
342 2f6m_A Suppressor protein STP2 33.4 86 0.0029 19.4 4.8 46 372-418 4-49 (65)
343 1mzb_A Ferric uptake regulatio 33.0 1.4E+02 0.0047 21.6 7.2 37 325-362 9-46 (136)
344 2ijq_A Hypothetical protein; s 32.9 1.6E+02 0.0054 22.2 7.2 50 313-362 46-103 (161)
345 1oyz_A Hypothetical protein YI 32.9 2E+02 0.007 23.5 24.1 149 180-344 128-277 (280)
346 1s6c_A KV4 potassium channel-i 32.5 1.6E+02 0.0054 22.1 8.3 145 5-151 17-180 (183)
347 3kae_A CDC27, possible protein 31.4 1.8E+02 0.0061 22.4 7.5 60 164-229 34-94 (242)
348 3b7b_A Euchromatic histone-lys 30.5 1.3E+02 0.0043 23.9 6.7 22 65-86 46-67 (237)
349 2w57_A Ferric uptake regulatio 30.0 1.7E+02 0.0057 21.6 7.8 35 213-247 33-67 (150)
350 4aez_C MAD3, mitotic spindle c 29.8 2.2E+02 0.0074 22.9 8.2 53 110-162 131-185 (223)
351 3ygs_P Procaspase 9; apoptosis 29.1 1.1E+02 0.0036 20.7 4.9 36 75-112 52-87 (97)
352 1bpo_A Protein (clathrin); cla 29.1 3.3E+02 0.011 24.8 13.7 140 246-396 343-482 (494)
353 2p1h_A APAF-1, apoptotic prote 29.1 1.3E+02 0.0043 20.0 7.0 36 73-110 49-84 (94)
354 2wvi_A Mitotic checkpoint seri 29.0 1.9E+02 0.0064 21.9 9.6 49 79-127 79-130 (164)
355 1lsh_A Lipovitellin (LV-1N, LV 28.9 5E+02 0.017 26.8 22.0 55 96-156 313-367 (1056)
356 4fke_A Aminopeptidase N; zinc 28.4 4.8E+02 0.016 26.4 17.1 89 133-226 691-787 (909)
357 4fke_A Aminopeptidase N; zinc 28.2 4.8E+02 0.016 26.4 17.6 158 201-362 690-859 (909)
358 3d5l_A Regulatory protein RECX 27.8 2E+02 0.0067 23.0 7.1 110 321-439 35-146 (221)
359 2lbf_A 60S acidic ribosomal pr 27.8 1.2E+02 0.0039 19.0 5.2 51 406-459 9-60 (69)
360 3mwm_A ZUR, putative metal upt 27.2 1.4E+02 0.0047 21.7 5.6 23 170-192 21-43 (139)
361 1oai_A Nuclear RNA export fact 27.1 46 0.0016 20.1 2.4 24 37-60 33-56 (59)
362 4b4t_S RPN3, 26S proteasome re 27.0 3.8E+02 0.013 24.8 13.3 14 387-400 417-430 (523)
363 3jxi_A Vanilloid receptor-rela 26.8 75 0.0026 25.8 4.7 26 102-127 11-36 (260)
364 3dd4_A KV channel-interacting 26.8 2.4E+02 0.0081 22.4 10.0 121 19-141 79-215 (229)
365 2dod_A Transcription elongatio 26.1 81 0.0028 20.6 3.6 31 350-381 16-46 (82)
366 2o03_A Probable zinc uptake re 25.8 1.6E+02 0.0053 21.1 5.7 38 210-247 23-60 (131)
367 2kz2_A Calmodulin, CAM; TR2C, 25.7 1E+02 0.0035 20.2 4.4 7 79-85 67-73 (94)
368 2o03_A Probable zinc uptake re 25.6 1.1E+02 0.0039 21.8 4.9 46 167-212 15-60 (131)
369 1a1w_A FADD protein; apoptosis 25.6 1.5E+02 0.0052 19.7 5.2 63 21-85 14-82 (91)
370 3aji_A 26S proteasome non-ATPa 25.3 2.4E+02 0.0083 22.0 8.7 20 66-85 43-62 (231)
371 2zu6_B Programmed cell death p 25.0 3.2E+02 0.011 23.2 16.2 23 27-49 6-28 (307)
372 2lwd_A Probable ATP-dependent 25.0 1.7E+02 0.0057 20.0 6.3 31 22-52 41-71 (100)
373 3aji_A 26S proteasome non-ATPa 24.9 2.5E+02 0.0085 21.9 8.7 57 66-127 9-67 (231)
374 1uzc_A Hypothetical protein FL 24.3 77 0.0026 20.0 3.2 31 350-381 14-44 (71)
375 2ijq_A Hypothetical protein; s 24.3 2.3E+02 0.0079 21.3 8.1 52 276-327 44-103 (161)
376 3bge_A Predicted ATPase; struc 24.1 2.6E+02 0.0089 21.9 8.6 93 270-362 10-110 (201)
377 2r9g_A AAA ATPase, central reg 23.8 2.7E+02 0.0091 21.9 10.8 37 276-313 26-62 (204)
378 2jul_A Calsenilin; EF-hand, ca 23.5 2.9E+02 0.01 22.3 9.0 129 58-188 109-255 (256)
379 3mwm_A ZUR, putative metal upt 23.5 1.1E+02 0.0036 22.4 4.4 49 201-249 17-65 (139)
380 1ug3_A EIF4GI, eukaryotic prot 23.5 3.6E+02 0.012 23.2 12.1 63 96-159 14-78 (339)
381 1wwp_A Hypothetical protein TT 23.4 2E+02 0.0067 20.2 8.6 15 372-386 55-69 (119)
382 2ko4_A Mediator of RNA polymer 23.4 99 0.0034 19.9 3.4 39 81-119 24-62 (81)
383 2r9g_A AAA ATPase, central reg 22.8 2.8E+02 0.0096 21.8 9.5 37 105-142 26-62 (204)
384 3e3v_A Regulatory protein RECX 22.8 2.6E+02 0.0088 21.4 10.9 52 109-160 49-100 (177)
385 2fu4_A Ferric uptake regulatio 22.6 1.5E+02 0.0053 18.7 7.4 7 182-188 37-43 (83)
386 4g8k_A 2-5A-dependent ribonucl 20.9 3E+02 0.01 23.2 7.6 13 11-23 40-52 (337)
387 2dzn_A Probable 26S proteasome 20.8 1.4E+02 0.0049 23.3 5.2 20 67-86 6-25 (228)
388 3a1y_A 50S ribosomal protein P 20.6 1.5E+02 0.005 17.7 5.1 37 421-459 18-54 (58)
389 2f8y_A Notch homolog 1, transl 20.6 2.9E+02 0.0098 21.4 7.0 20 66-85 28-47 (223)
390 1bd8_A P19INK4D CDK4/6 inhibit 20.4 2.2E+02 0.0077 20.4 5.9 152 64-223 3-156 (156)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-37 Score=300.47 Aligned_cols=411 Identities=11% Similarity=0.000 Sum_probs=257.2
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHH
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLA 101 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~ 101 (460)
.+...+..++..+.+.|++++|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+++....++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 34566777888888888888888888887754 346677777888888888888888888887555567778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhC---------------CCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDK---------------GFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSY 165 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~ 165 (460)
+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|+ ++|.+.|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 888888888888888743221 233457788888888888888 78888888777653 2222222
Q ss_pred HH--------------------------------------HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 166 KI--------------------------------------LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHY 207 (460)
Q Consensus 166 ~~--------------------------------------li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 207 (460)
.. ++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 22 234445566666666666666544 45666666666666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHH
Q 012577 208 VSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEA 285 (460)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~ 285 (460)
.+.|++++|..+|+++.+.+.. +..++..++.+|.+.|++++|..+++.+.. . .+..+++.++..|.+.|++++|.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 6666666666666666654432 445556666666666666666666665543 2 244556666666666666666666
Q ss_pred HHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 286 VFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 286 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
+|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+
T Consensus 395 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 395 YFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66666554322 45566666666666666666666666665542 34556666666666666666666666666655432
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcC
Q 012577 366 FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV----GYVAR--FKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPN 437 (460)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~ 437 (460)
.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+ .+..+++.+.+.+ +.+
T Consensus 473 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 473 --YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred --CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 24455666666666666666666666666554 44454 4566666666666666 4555555554433 224
Q ss_pred HHHHHHH
Q 012577 438 KALAAQV 444 (460)
Q Consensus 438 ~~~~~~l 444 (460)
..++..+
T Consensus 550 ~~~~~~l 556 (597)
T 2xpi_A 550 ANVHTAI 556 (597)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4455444
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-36 Score=294.95 Aligned_cols=420 Identities=10% Similarity=0.011 Sum_probs=356.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
..++++.. ..|+...+..++..+.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 105 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 179 (597)
T 2xpi_A 105 FVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179 (597)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT
T ss_pred HHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc
Confidence 34444443 3457788889999999999999999999987543 567889999999999999999999999964332
Q ss_pred -----------------CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH------------------
Q 012577 90 -----------------FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL------------------ 134 (460)
Q Consensus 90 -----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l------------------ 134 (460)
..+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l 258 (597)
T 2xpi_A 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKL 258 (597)
T ss_dssp C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHS
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhc
Confidence 125789999999999999999999999999987522 33333332
Q ss_pred --------------------HHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012577 135 --------------------LILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGI 193 (460)
Q Consensus 135 --------------------l~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 193 (460)
+..|.+.|+ ++|.++|+.+.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 334445566 8889999888765 5899999999999999999999999999999776
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAI 271 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li 271 (460)
+.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+.+.. .| +..+|+.++
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 414 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5578899999999999999999999999998654 34788999999999999999999999998865 44 677999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
.+|.+.|++++|.++|+++.+.++ .+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|..++..|.+.|+++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999998754 378999999999999999999999999999874 568999999999999999999
Q ss_pred hHHHHHHHHHHhC---CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhh
Q 012577 352 KADSILLKAQQQN---KFKPM--FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYG 424 (460)
Q Consensus 352 ~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~ 424 (460)
+|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|+ .+..
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999997753 45677 7899999999999999999999999999987 6789999999999999999 5777
Q ss_pred hHHHHHhCCCCcCH-HHHHHH
Q 012577 425 IRDRMRADNVFPNK-ALAAQV 444 (460)
Q Consensus 425 ~~~~m~~~~~~p~~-~~~~~l 444 (460)
.++++.+ +.|+. ..+..|
T Consensus 572 ~~~~~l~--~~p~~~~~~~~l 590 (597)
T 2xpi_A 572 HLHESLA--ISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHh--cCCCChHHHHHH
Confidence 7777766 45654 344444
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.7e-29 Score=230.54 Aligned_cols=380 Identities=9% Similarity=-0.022 Sum_probs=327.5
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCC
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNN 108 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 108 (460)
+...+.+.|++++|++.++.+.... |.+...+..+...+...|++++|...++......| +..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999888765 55566777888889999999999999998766544 67889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (460)
+++|...|+++.+.. +.+..++..+..++...|+ ++|...|+.+.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 3356678999999999999 99999999998874 44556788888999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHH
Q 012577 188 MKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLD 265 (460)
Q Consensus 188 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~ 265 (460)
+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++... .| +..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 98764 456889999999999999999999999999986543 567888999999999999999999987655 55 567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
++..+...+.+.|++++|.+.|+++.+.++. +..+|..+...+.+.|++++|...++.+.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 8899999999999999999999999986543 67889999999999999999999999999873 678899999999999
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.+...|..+...+...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999997643 3456789999999999999999999999999865 5567788888887776653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.6e-33 Score=259.01 Aligned_cols=214 Identities=12% Similarity=0.112 Sum_probs=172.1
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 181 MDQVVEAMKSEGIEPDS-STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+....+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 44455556655554443 346777777777777777777777777777777777777777777766553321
Q ss_pred cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 260 SNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 260 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
.+.+.++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 22345788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|+.++|.+++++|++.|..|+..||+.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999965 4799999999999999999999999999999999999999999999999998864
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9e-32 Score=252.11 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=138.3
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---------hHHHH
Q 012577 148 DVLLLMEKENVKLTQ-FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR---------KEKAE 217 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~---------~~~a~ 217 (460)
.+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. .++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 344444444443332 24556666666666666666666666666666666666666666665443 45666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW 294 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 294 (460)
++|++|...|+.||..||+++|.+|++.|++++|.++|++|.. .|+..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666666654 4677777777888888888888888888888889
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 295 KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 295 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998899999999988888875
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.6e-27 Score=214.74 Aligned_cols=368 Identities=13% Similarity=0.048 Sum_probs=316.8
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK- 143 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~- 143 (460)
+...+.+.|++++|.+.++.+....|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 456778899999999999998766564 5667777888999999999999999988764 5678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998864 4456789999999999999999999999998774 445677888999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH
Q 012577 224 EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301 (460)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 301 (460)
.+..+ .+..+|..+...+...|++++|...|+++.. .| +...+..+...+...|++++|...|++..+..+. +..+
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 88643 3578899999999999999999999998766 45 5668899999999999999999999999886543 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
+..+...|...|++++|...++.+.+.+ +.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHH
Confidence 9999999999999999999999999864 4568899999999999999999999999998865 356788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCH-HHHHHH
Q 012577 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNK-ALAAQV 444 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~-~~~~~l 444 (460)
+.|++++|.+.++++.+.. +.+..++..+...|.+.|+ .+...++.+.+ +.|+. ..+..+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~l 379 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhH
Confidence 9999999999999999874 6678899999999999999 56677777665 55653 334333
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.8e-24 Score=204.65 Aligned_cols=406 Identities=8% Similarity=-0.054 Sum_probs=315.4
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
...+......+.+.|++++|+..|+.+.... |+...+..+..++.+.|++++|...|+++....| +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 3456777788899999999999999998875 5788999999999999999999999999876655 56789999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHH-----------------------------
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLL----------------------------- 152 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~----------------------------- 152 (460)
+.+.|++++|...|+++.+.+ +++......++..+..... ..+.+.+..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999886 3444454444443333221 111111111
Q ss_pred ------HHHcCCC--------C-CHHHHHHHHHHHhh---cCChhHHHHHHHHHHh-----CCC--------CCCHHHHH
Q 012577 153 ------MEKENVK--------L-TQFSYKILIDIKGQ---SNDLTGMDQVVEAMKS-----EGI--------EPDSSTQA 201 (460)
Q Consensus 153 ------~~~~~~~--------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~ 201 (460)
+...... | +...+......+.. .|++++|..+|+++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1110000 1 13344444444443 8999999999999887 311 22356788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC
Q 012577 202 ILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNK 279 (460)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~ 279 (460)
.+...+...|++++|...|+++.+.... ..++..+..++...|++++|...++.... .| +...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8889999999999999999999886544 78888999999999999999999998765 33 66688899999999999
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
+++|...++.+.+..+. +...+..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999886554 67788899999999999999999999998863 55678899999999999999999999999
Q ss_pred HHHhCCCCcC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHH
Q 012577 360 AQQQNKFKPM----FSSYMLIMDQYAK---RGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 360 ~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
+.+..+-.++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+...|...|+ .+...++...
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8776543333 3478888999999 999999999999999875 6678889999999999999 5666665555
Q ss_pred hCCCCcCHHH
Q 012577 431 ADNVFPNKAL 440 (460)
Q Consensus 431 ~~~~~p~~~~ 440 (460)
+ +.|+...
T Consensus 477 ~--~~~~~~~ 484 (514)
T 2gw1_A 477 D--LARTMEE 484 (514)
T ss_dssp H--HCSSHHH
T ss_pred H--hccccHH
Confidence 5 4565443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.2e-23 Score=195.94 Aligned_cols=370 Identities=12% Similarity=0.016 Sum_probs=230.0
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTL 99 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l 99 (460)
+.+...+..+...+.+.|++++|+.+|+.+.... |.+...+..+..++...|++++|...|+++....| +..+|..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3456677777888888899999999998887764 45677888888888889999999999888766544 46778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTS---FACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (460)
..+|.+.|++++|.+.|+++.+.+ +.+. ..+..+...+.. ..+..+...+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcC
Confidence 888888999999999998888764 2233 444444333110 01112233344455
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
++++|.+.|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+... .+..++..+..+|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554432 33444555555555555555555555555544321 234455555555555555555555555
Q ss_pred Hhcc-CCC-HHHHHH------------HHHHHHccCCHHHHHHHHHHHHhcccCcC----HHHHHHHHHHHHhcCCHHHH
Q 012577 257 LCES-NPW-LDVCMA------------AIEAWGKLNKVEEAEAVFKRMSKTWKKLS----TKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 257 ~~~~-~~~-~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a 318 (460)
.+.. .|+ ...+.. +...+.+.|++++|...|+.+.+..+. + ...+..+...+.+.|++++|
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4433 222 222222 266777777788888887777764322 2 34667777777788888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH------------HHHHhcC--
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM------------DQYAKRG-- 384 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~g-- 384 (460)
...++.+.+.. +.+..+|..+..+|...|++++|.+.++++.+..+- +...+..+. ..|...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN--DQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 88887777653 446777777788888888888888888777654322 233444444 2233444
Q ss_pred ---CHHHHHHHHHHH-HHcC--CCcc-------HHHHHHHHHHHHhcCCc
Q 012577 385 ---DIHSTEKIFHRM-RQVG--YVAR-------FKQFQTLVQAYINAKTP 421 (460)
Q Consensus 385 ---~~~~a~~~~~~m-~~~~--~~~~-------~~~~~~l~~~~~~~g~~ 421 (460)
+.+++.+.++++ .+.. ..|+ ...+..+..+|...++.
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 667788888763 3321 0111 23788888888888873
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.4e-23 Score=193.22 Aligned_cols=311 Identities=9% Similarity=-0.001 Sum_probs=242.2
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|+ ++|...|+.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556666666666666666666666666542 3345566666666666666 66666666666553 445677788888
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDS---STQAIL------------AKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (460)
+|.+.|++++|.+.|+++.+.. +.+. .++..+ ...+...|++++|+..|+++.+... .+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 8888888888888888888763 2233 455554 4458899999999999999987643 477889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH--------
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL-------- 305 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------- 305 (460)
..+..+|...|++++|...|+.+.. ..+..++..+...|...|++++|...|+++.+..+. +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 456789999999999999999999999999875433 44455544
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 306 ----LKVYADHKMLSKGKDLVKQMAESGCHIG-----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 306 ----i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
...+...|++++|...++.+.+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 889999999999999999999853 44 4578889999999999999999999998764 2356899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
..+|...|++++|...++++.+.. +.+...+..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 999999999999999999999864 55667777777
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.5e-22 Score=193.15 Aligned_cols=396 Identities=10% Similarity=0.019 Sum_probs=293.2
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
...+......+.+.|++++|++.|+.+.... |.+...+..+..++.+.|++++|.+.|+++....| +...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4566777888899999999999999998875 56788899999999999999999999999876645 57789999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHc------CCCCCHH------------
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKE------NVKLTQF------------ 163 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~------~~~~~~~------------ 163 (460)
+...|++++|...|+.+ ... |+.. ...+..+...+. ..+...++.+... ...|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLN--GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcC--CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999743 332 2211 111222222222 5566666655432 1112221
Q ss_pred ------------------HHHHHHHHHhh--------cCChhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhC
Q 012577 164 ------------------SYKILIDIKGQ--------SNDLTGMDQVVEAMKSEGIEPD-------SSTQAILAKHYVSG 210 (460)
Q Consensus 164 ------------------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~l~~~~~~~ 210 (460)
....+...+.. .|++++|..+|+++.+.. +.+ ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 22222222222 247889999999988763 223 23566777888889
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
|++++|...|+++.+.. |+..++..+...+...|++++|...++.... .| +..++..+...+...|++++|...|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998764 4477888888999999999999999987765 34 56688889999999999999999999
Q ss_pred HHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc
Q 012577 289 RMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP 368 (460)
Q Consensus 289 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 368 (460)
++.+..+. +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+..+-.+
T Consensus 335 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 98886543 56788889999999999999999999998874 55678888899999999999999999998876542222
Q ss_pred C----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhC
Q 012577 369 M----FSSYMLIMDQYAKR----------GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRAD 432 (460)
Q Consensus 369 ~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 432 (460)
+ ...+.....++.+. |++++|...|+++.+.. +.+...|..+...|...|+ .+...++...+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2 12234445667777 99999999999999875 6678889999999999998 566666665553
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-21 Score=187.79 Aligned_cols=393 Identities=10% Similarity=-0.015 Sum_probs=299.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcc
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
....+.+..+.. |++..+..+...+.+.|++++|++.|+.+.... |.+...+..+..++...|++++|...|+++.
T Consensus 25 A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 25 AIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334555555554 588999999999999999999999999998875 5567889999999999999999999999986
Q ss_pred cCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHH-----------------------------------hCCC-------
Q 012577 88 ESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMK-----------------------------------DKGF------- 124 (460)
Q Consensus 88 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----------------------------------~~g~------- 124 (460)
...| +......++..+........+.+.+..+. ....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
T 2gw1_A 101 LNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180 (514)
T ss_dssp HSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSC
T ss_pred hcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHh
Confidence 6544 33333333333332222222222221110 0000
Q ss_pred --CCChhhhHHHHHHHHh---cCc-hHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHhhcCChhHHHHHH
Q 012577 125 --PVTSFACNQLLILYKR---LDK-KKVADVLLLMEK-----ENV--------KLTQFSYKILIDIKGQSNDLTGMDQVV 185 (460)
Q Consensus 125 --~~~~~~~~~ll~~~~~---~~~-~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (460)
+.+...+......+.. .|+ ++|...++++.. ..- +.+..++..+...+...|++++|.+.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 260 (514)
T 2gw1_A 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI 260 (514)
T ss_dssp CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1112333333333333 566 999999998887 311 223457888899999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C
Q 012577 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-W 263 (460)
Q Consensus 186 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~ 263 (460)
+++.+.. |+..++..+..++...|++++|...++++.+.... +..++..+...+...|++++|...++.... .| +
T Consensus 261 ~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 261 KKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred HHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 9998875 44888999999999999999999999999887543 567888999999999999999999998765 33 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH-IG----PLAWD 338 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 338 (460)
...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|...++.+.+.... ++ ...+.
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 668899999999999999999999999886443 6788999999999999999999999998774211 11 34888
Q ss_pred HHHHHHHc---CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 339 ALVKLHVE---GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 339 ~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
.+...+.. .|++++|.+.++++.+..+ .+...+..+..++.+.|++++|.+.|+++.+.. +-+...+..+
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~ 489 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-RTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 99999999 9999999999999987653 356788899999999999999999999999875 4444444443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.3e-19 Score=164.51 Aligned_cols=314 Identities=8% Similarity=-0.039 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKR 140 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 140 (460)
.+..+...+...|++++|...|+++....| +...|..+..++...|++++|...|+++.+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 67 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----------------- 67 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------
Confidence 344445555555555555555555443322 34445555555555555555555555554432
Q ss_pred cCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC---CCHHHHHHH------------HH
Q 012577 141 LDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE---PDSSTQAIL------------AK 205 (460)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~l------------~~ 205 (460)
+.+...+..+...+...|++++|.+.|+++.+.. + .+...+..+ ..
T Consensus 68 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 68 ------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555555555555555555555555432 1 122223222 35
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a 283 (460)
.+...|++++|...++++.+... .+...+..+..++...|++++|...++.... . .+...+..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55566666666666666655432 2445555666666666666666666665543 2 2444566666666666666666
Q ss_pred HHHHHHHHhcccCcCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcC
Q 012577 284 EAVFKRMSKTWKKLSTKHYT------------ALLKVYADHKMLSKGKDLVKQMAESGCHIGP----LAWDALVKLHVEG 347 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 347 (460)
...|+...+..+. +...+. .+...+.+.|++++|...++.+.+.. +.+. ..+..+...+.+.
T Consensus 208 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHc
Confidence 6666666654322 222222 23556777888888888888887753 2233 2344566778888
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
|++++|.+.++++.+..+ .+...+..+..++.+.|++++|.+.|+++.+.. +.+...+..+..+...
T Consensus 286 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 888888888888876542 355677888888888888888888888888764 4456666666665543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.1e-19 Score=174.63 Aligned_cols=378 Identities=13% Similarity=0.033 Sum_probs=287.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
..+.+..+. .|.++..+..+...+.+.|++++|++.|+.+.... |.+...+..+..++...|++++|...|+.+...
T Consensus 46 ~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 122 (537)
T 3fp2_A 46 KYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122 (537)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--
T ss_pred HHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 344554443 34578889999999999999999999999998875 557788999999999999999999999755332
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC------CCCChhh------------------------------hHH
Q 012577 90 FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG------FPVTSFA------------------------------CNQ 133 (460)
Q Consensus 90 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~------------------------------~~~ 133 (460)
|+ ..+..+..+...+...+|...++++.... ..|+... ...
T Consensus 123 -~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (537)
T 3fp2_A 123 -GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA 199 (537)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH
T ss_pred -CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHH
Confidence 32 22222334445556678888888876531 1122111 112
Q ss_pred HHHHHHhc--------Cc-hHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH
Q 012577 134 LLILYKRL--------DK-KKVADVLLLMEKENVKLT-------QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS 197 (460)
Q Consensus 134 ll~~~~~~--------~~-~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 197 (460)
+...+... ++ ++|..+++.+.+.. +.+ ..++..+...+...|++++|.+.|+++.+. .|+.
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~ 276 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTP 276 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCc
Confidence 22222211 23 67788888887653 223 235677778889999999999999999987 4668
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHH
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWG 275 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~ 275 (460)
.++..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++.... .| +...+..+...+.
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999988654 3678899999999999999999999998765 44 5678899999999
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcC---
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-----CHIGPLAWDALVKLHVEG--- 347 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~--- 347 (460)
..|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.. .......+......+...
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999987543 67789999999999999999999999987642 111223344556677777
Q ss_pred -------CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 348 -------GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 348 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|++++|...|+++.+..+ .+...+..+..+|.+.|++++|.+.|++..+..
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999988653 355788999999999999999999999999875
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.7e-19 Score=161.54 Aligned_cols=330 Identities=11% Similarity=-0.024 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
+..+..+...+...|++++|+..|+.+.... |.+...+..+..++...|++++|...|+++....| +...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4567778888999999999999999998875 55678899999999999999999999999876645 56889999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCC--CChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFP--VTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (460)
+...|++++|...|++..+.... .+...+..+..... ...+..+...+...|++++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHH
Confidence 99999999999999999886420 12333322221100 1123345667777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
|.++++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++....
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888877654 45677777888888888888888888888877643 3567777888888888888888888876654
Q ss_pred -CCC-HHHHH------------HHHHHHHccCCHHHHHHHHHHHHhcccCcCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 012577 261 -NPW-LDVCM------------AAIEAWGKLNKVEEAEAVFKRMSKTWKKLST----KHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 261 -~~~-~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.|+ ...+. .+...+.+.|++++|...++.+.+..+. +. ..+..+...+...|++++|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 332 22222 3366788999999999999998886443 33 23556788999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012577 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR 383 (460)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (460)
+...+.. +.+..++..+...+...|++++|.+.|+++.+..+ -+...+..+..+....
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHH
Confidence 9998873 55788999999999999999999999999987543 2345566666655443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.3e-19 Score=159.95 Aligned_cols=288 Identities=11% Similarity=-0.039 Sum_probs=179.5
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDI 171 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (460)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----------------------------------p~~~~~~~~~~~~ 65 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----------------------------------PFHASCLPVHIGT 65 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------CCChhhHHHHHHH
Confidence 44455556666666666666666666665542 2223334444455
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
+...|++++|..+++++.+.. +.+...|..+...+...| ++++|...|+++.+.... +...+..+..++...|++++
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHH
Confidence 555555555555555555442 334455555555555555 555566665555544322 33455555556666666666
Q ss_pred HHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 251 VARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 251 a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|...++.... .| +...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 6666555443 22 3345555666677777777777777777665433 5667777777777777887777777777653
Q ss_pred C--------CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 329 G--------CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 329 ~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
. .+.+..++..+...|.+.|++++|...++++.+..+ .+...+..+..++.+.|++++|.+.++++.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 1 133456777888888888888888888888776543 244677778888888888888888888887764
Q ss_pred CCccHHHHHHHHHHH-HhcCC
Q 012577 401 YVARFKQFQTLVQAY-INAKT 420 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~-~~~g~ 420 (460)
+.+...+..+..++ ...|+
T Consensus 301 -p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 301 -RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp -SCCHHHHHHHHHHHHTTTTC
T ss_pred -CCchHHHHHHHHHHHHHhCc
Confidence 55667777777776 34444
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2e-17 Score=156.88 Aligned_cols=353 Identities=10% Similarity=-0.015 Sum_probs=287.8
Q ss_pred CCHHHHHHHHHHHHh----cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHH----hhCHHHHHHHHHhcccCCCch
Q 012577 22 LSRAEIALAMANLRT----RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAK----LRGLQKAESYIQKIPESFRGE 93 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 93 (460)
-++.....+...+.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|.++|++.... .+.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLP 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCH
Confidence 356777777777777 789999999999887764 55677788888888 88999999999997664 466
Q ss_pred hHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh----cCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 94 VVYRTLLANCVA----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKR----LDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 94 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
..+..|...|.. .+++++|...|++..+.| ++..+..+...|.. .++ ++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777778888887 789999999999998876 56677777777775 445 88999999888765 5677
Q ss_pred HHHHHHHHhh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 165 YKILIDIKGQ----SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 165 ~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
+..+...|.. .+++++|.+.|++..+.| +..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 899999999999988764 56778888888876 789999999999988765 446677
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcccCcCHHHHHHHHH
Q 012577 237 LLLPLYAE----LGKADQVARIWKLCESNPWLDVCMAAIEAWGKL-----NKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307 (460)
Q Consensus 237 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 307 (460)
.+...|.. .+++++|..+|+......+...+..+...|... +++++|...|+...+.+ +...+..+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 336 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGA 336 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 77778877 889999999999887777778888888888877 89999999999988865 4567777888
Q ss_pred HHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 308 VYADHK---MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 308 ~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
.|...| ++++|...|+...+.| ++..+..+...|.. .+++++|.++|++..+.. +...+..+...|
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y 409 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHH
Confidence 887766 7889999999998874 67788888888888 789999999999987642 356777888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCC
Q 012577 381 AK----RGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 381 ~~----~g~~~~a~~~~~~m~~~~~ 401 (460)
.+ .++.++|...|++..+.+.
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 87 8999999999999998763
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=9.5e-19 Score=156.95 Aligned_cols=196 Identities=8% Similarity=-0.095 Sum_probs=102.9
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
.+...+..++..+...|++++|.++|+++....| +...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444555566666666666666666666544433 33445555556666666666666666665542 223344444444
Q ss_pred HHHhcC-c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 012577 137 LYKRLD-K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKE 214 (460)
Q Consensus 137 ~~~~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 214 (460)
.+...| + ++|...++...+.. +.+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 444444 3 44444444444332 2234455555666666666666666666655443 233445555555666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+|...++++.+... .+..++..+...+...|++++|...++.
T Consensus 177 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 177 LAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 66666666555432 2334444455555555555555444443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3e-19 Score=162.95 Aligned_cols=284 Identities=9% Similarity=-0.055 Sum_probs=131.9
Q ss_pred HhhCHHHHHH-HHHhcccCCC-----chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchH
Q 012577 72 KLRGLQKAES-YIQKIPESFR-----GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKK 145 (460)
Q Consensus 72 ~~~~~~~a~~-~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 145 (460)
-.|++++|.. .|++.....| +...+..+...+.+.|++++|...|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3455555555 5554333211 23345555555556666666666666555542
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
+.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 95 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 95 -------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666543 34566666666666666666666666666665
Q ss_pred CCCCCCHHHHHH---------------HHHHHHhcCChhHHHHHHHHhcc-CC---CHHHHHHHHHHHHccCCHHHHHHH
Q 012577 226 DNLKEHRWTCRL---------------LLPLYAELGKADQVARIWKLCES-NP---WLDVCMAAIEAWGKLNKVEEAEAV 286 (460)
Q Consensus 226 ~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~ 286 (460)
..... ...+.. .+..+...|++++|...++.+.. .| +..++..+...+.+.|++++|...
T Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 43221 111110 11111244444444444444332 22 233444444444444555555555
Q ss_pred HHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC
Q 012577 287 FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366 (460)
Q Consensus 287 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (460)
|+++.+..+. +..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+..+-
T Consensus 240 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 5444443221 33444444455555555555555555544432 233444444555555555555555555444432211
Q ss_pred C---------cCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 367 K---------PMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 367 ~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
. ....+|..+..++.+.|++++|..+++
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 0 002344444555555555555544443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=4.5e-16 Score=147.49 Aligned_cols=363 Identities=11% Similarity=0.041 Sum_probs=301.0
Q ss_pred hHHHHHHHHHhcccCCCChhhhHHHHHHHHH----hhCHHHHHHHHHhcccCCCchhHHHHHHHHHHc----CCCHHHHH
Q 012577 42 KALQLSEWLETNKKLDFIERDYASCLDLIAK----LRGLQKAESYIQKIPESFRGEVVYRTLLANCVA----GNNVKKAE 113 (460)
Q Consensus 42 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 113 (460)
.+++.+......+ +...+..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|.
T Consensus 25 ~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 25 VNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455666555544 66778888888887 89999999999997764 567788888888988 89999999
Q ss_pred HHHHHHHhCCCCCChhhhHHHHHHHHh----cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCChhHHHHH
Q 012577 114 EVFNRMKDKGFPVTSFACNQLLILYKR----LDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ----SNDLTGMDQV 184 (460)
Q Consensus 114 ~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~ 184 (460)
+.|++..+.| ++..+..+-..|.. .++ ++|...|+.....| +...+..|...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999876 66777777777776 455 99999999998876 56677778888877 8899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 012577 185 VEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE----LGKADQVARIWK 256 (460)
Q Consensus 185 ~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 256 (460)
|++..+.| +..++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999864 67888899999988 899999999999998875 45678888888886 889999999999
Q ss_pred HhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 012577 257 LCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH-----KMLSKGKDLVKQMAE 327 (460)
Q Consensus 257 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~ 327 (460)
......+...+..+...|.. .++.++|...|+...+.| +...+..+...|... +++++|...++...+
T Consensus 248 ~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 248 QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 98887888888888888887 899999999999998764 566778888888887 899999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 012577 328 SGCHIGPLAWDALVKLHVEGG---EVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK----RGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 400 (460)
.| +...+..+...|...| ++++|.++|++..+. .+...+..+...|.. .+++++|.+.|++..+.|
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 75 5677888888888766 789999999998765 245688888888988 899999999999999976
Q ss_pred CCccHHHHHHHHHHHHh----cCC--chhhhHHHHHhCCC
Q 012577 401 YVARFKQFQTLVQAYIN----AKT--PAYGIRDRMRADNV 434 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~~~----~g~--~~~~~~~~m~~~~~ 434 (460)
+...+..|...|.. .++ .+...++.-.+.+.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 46788888888887 566 56666766666553
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1.5e-16 Score=152.29 Aligned_cols=404 Identities=11% Similarity=0.059 Sum_probs=294.1
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHH
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTL 99 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 99 (460)
.|-+...+..++. +.+.|++++|..+|+.+.... |.+...+...+..+.+.|+++.|..+|++.....|+...|..+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457778888887 477899999999999998874 6678889999999999999999999999998888888888887
Q ss_pred HHHH-HcCCCHHHHHH----HHHHHHh-CCCCC-ChhhhHHHHHHHHh---------cCc-hHHHHHHHHHHHcCCCCCH
Q 012577 100 LANC-VAGNNVKKAEE----VFNRMKD-KGFPV-TSFACNQLLILYKR---------LDK-KKVADVLLLMEKENVKLTQ 162 (460)
Q Consensus 100 l~~~-~~~~~~~~a~~----~~~~m~~-~g~~~-~~~~~~~ll~~~~~---------~~~-~~a~~~~~~~~~~~~~~~~ 162 (460)
+... ...|+.++|.+ +|++... .|..| +...|...+....+ .|+ +.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45677776655 7777654 35443 45667777765544 455 8899999998873211112
Q ss_pred HHHHHHHHHH-------------hhcCChhHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHHhC--
Q 012577 163 FSYKILIDIK-------------GQSNDLTGMDQVVEAMK------SEG---IEPD--------SSTQAILAKHYVSG-- 210 (460)
Q Consensus 163 ~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~l~~~~~~~-- 210 (460)
..|....... .+.++++.|..++.++. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3443322211 13456777887777632 221 3444 24566555433322
Q ss_pred --CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHhcc--CC-CHHHH
Q 012577 211 --GRK----EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE-------LGKAD-------QVARIWKLCES--NP-WLDVC 267 (460)
Q Consensus 211 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~--~~-~~~~~ 267 (460)
++. ..+..+|+++....+ -+...|...+..+.. .|+++ +|..++++... .| +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 477889998887633 367788888888775 79987 89999998764 45 56789
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST-KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL-HV 345 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 345 (460)
..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+.|++++|..+|+...+.. +.+...|...... +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence 99999999999999999999999985322 33 589999999999999999999999998863 3334444433333 34
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcc--HHHHHHHHHHHHhcCC--
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG-YVAR--FKQFQTLVQAYINAKT-- 420 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~-- 420 (460)
..|+.++|..+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 68999999999999988754 346788999999999999999999999999864 2332 4488888988888998
Q ss_pred chhhhHHHHHh
Q 012577 421 PAYGIRDRMRA 431 (460)
Q Consensus 421 ~~~~~~~~m~~ 431 (460)
.+..+..++.+
T Consensus 481 ~~~~~~~r~~~ 491 (530)
T 2ooe_A 481 SILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556655544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2e-18 Score=157.49 Aligned_cols=304 Identities=10% Similarity=-0.065 Sum_probs=192.1
Q ss_pred HHhcccchhHHH-HHHHHHhcccCCC--ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCH
Q 012577 34 LRTRRMYGKALQ-LSEWLETNKKLDF--IERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 34 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 109 (460)
+.-.|++++|++ .|+......+..| +...+..+...+...|++++|...|+++....| +..+|..+..++.+.|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 345578889988 8876554432222 345678899999999999999999999877644 577899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 110 KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 110 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
++|...|+++.+.+ +.+..++..+...+...|+ ++|...++.+.... +.+...+..+... .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~--------- 176 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h---------
Confidence 99999999998764 3355556666666666666 66666666665543 2222222111000 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHH
Q 012577 189 KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE-HRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLD 265 (460)
Q Consensus 189 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~ 265 (460)
.. ..+ ...+..+ ..+...|++++|...|+++.+..... +..++..+...|...|++++|...++.... .| +..
T Consensus 177 -~~-~~~-~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 177 -GG-AGL-GPSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -hh-hcc-cHHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 00 000 0011112 22236666777777777666543321 356666667777777777777777766544 33 455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------CCHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH----------IGPL 335 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~ 335 (460)
.+..+...+...|++++|...|+++.+..+ .+..++..+...|.+.|++++|...++.+.+.... ....
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 677777777888888888888887776543 25677888888888888888888888887764211 1267
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
+|..+..+|...|++++|..++.+.
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHH
Confidence 8888888888999999888877643
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=5.7e-18 Score=154.34 Aligned_cols=211 Identities=10% Similarity=0.036 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
+..+|..+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +...+..+
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-- 173 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNK-- 173 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhh--
Confidence 44455555555666666666666666555443 334555556666666666666666666555542210 00000000
Q ss_pred HHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cCHHHHHHHHHHHHhcCCHHHHH
Q 012577 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
......+..+...+...|++++|...|+++.+..+. ++..++..+...|...|++++|.
T Consensus 174 --------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 174 --------------------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred --------------------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 000112223344444555555555555555443221 13444555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+..+ .+...+..+..+|.+.|++++|...|+++.+
T Consensus 234 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 234 DAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554442 33445555555555555555555555555544321 1234445555555555555555555555543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.7e-18 Score=157.87 Aligned_cols=266 Identities=9% Similarity=-0.091 Sum_probs=153.4
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+ ++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456777777777777777777777777653 3456677777777777777 77777777777664 456778888899
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPD-----------SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EHRWTCRLL 238 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 238 (460)
.|...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|+..|+++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999887642 22 122333456666777777777777776654322 134444445
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 239 LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
...|...|++++|...+ +++.+..+. +..+|..+...|...|++++|
T Consensus 220 ~~~~~~~g~~~~A~~~~--------------------------------~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAF--------------------------------NAALTVRPE-DYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHTCHHHHHHHH--------------------------------HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHH--------------------------------HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 55555555544444444 444443221 344555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC----------cCHHHHHHHHHHHHhcCCHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK----------PMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~ 388 (460)
...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+..+-. .+...|..+..++...|+.+.
T Consensus 267 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 267 VEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 55555555442 2334555555555555555555555555554432110 013456666666666666666
Q ss_pred HHHHHHH
Q 012577 389 TEKIFHR 395 (460)
Q Consensus 389 a~~~~~~ 395 (460)
+.++.++
T Consensus 346 a~~~~~~ 352 (365)
T 4eqf_A 346 FQAANLG 352 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 6555543
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=8.1e-19 Score=157.06 Aligned_cols=290 Identities=10% Similarity=0.028 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCV 104 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~ 104 (460)
+.+..++. +.|++++|.++++.+. .+.+|+.++.++.+.|++++|++.|.+. ++...|..++.++.
T Consensus 7 ~a~~~ll~---~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae 72 (449)
T 1b89_A 7 SAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 33444443 4567889999998772 2348899999999999999999999764 56678899999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHH
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQ 183 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (460)
..|++++|...++..++. .+++.+.+.++.+|.+.|+ .++.++++ .|+..+|+.+...|...|++++|..
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999977766664 4567888899999999988 66666553 4777899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCC
Q 012577 184 VVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPW 263 (460)
Q Consensus 184 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 263 (460)
+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+...|+
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad 208 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD 208 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh
Confidence 99976 37889999999999999999999988 2678999999999999999999766655543443
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC------CHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE-SGCHI------GPLA 336 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~------~~~~ 336 (460)
. ...++..|.+.|++++|..+++...... +-....|+-|.-.|++- ++++.++-++.... -+++| +...
T Consensus 209 ~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 209 E--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp H--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred h--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3 4468888999999999999999888765 34667788887777764 34444433333222 22333 4567
Q ss_pred HHHHHHHHHcCCChhhHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~ 356 (460)
|.-++-.|...++++.|..+
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88888888888888888775
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.2e-18 Score=155.93 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLAN 102 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~ 102 (460)
.+..+..+..++.+.|++++|++.|... ++...|..++..+...|++++|.++++...+..+++.+.+.++.+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 4457777788888888888888887432 355577777888888888888888777766655566777788888
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
|.+.|+++++.++++ .|+..+|+.+...|...|. ++|..+|..+ ..|..++.++.+.|++++|
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHH
Confidence 888888888777764 2566688888888887777 7788877765 3677788888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES- 260 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 260 (460)
.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++++|..+++....
T Consensus 168 Vea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 168 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 8888777 2677888888888888888888554433 222333344677778888888888888876554
Q ss_pred -CCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhcccCc------CHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 261 -NPWLDVCMAAIEAWGKL--NKVEEAEAVFKRMSKTWKKL------STKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 261 -~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
+-....|+-+.-.|++- ++..+.++.|..-. +++| +...|.-+...|...++++.|...
T Consensus 237 e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 237 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 22444666666666654 33444444443211 2222 345677777777777888777663
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=8.6e-17 Score=143.96 Aligned_cols=263 Identities=10% Similarity=-0.035 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKG 173 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (460)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~ 66 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-----------------------------------PEREEAWRSLGLTQA 66 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHHHHH
Confidence 344555555666666666666666655432 223444555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------H
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL--------------L 239 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~ 239 (460)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+ .
T Consensus 67 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 67 ENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------
T ss_pred HcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666666666666555443 334555555666666666666666666665544322 11111111 1
Q ss_pred H-HHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 240 P-LYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 240 ~-~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
. .+...|++++|...++.... .| +...+..+...+...|++++|...++++.+..+. +..++..+...+...|+++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHH
Confidence 1 24444555555555554433 22 3444555555555555555555555555544322 4455555556666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC----------cCHHHHHHHHHHHHhcCCH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK----------PMFSSYMLIMDQYAKRGDI 386 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~ 386 (460)
+|...++.+.+.. +.+..++..+...|.+.|++++|.+.++++.+..+-. .+...|..+..++.+.|++
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 6666666655542 3345555555666666666666666665554433110 0234555555566666666
Q ss_pred HHHHHHHHH
Q 012577 387 HSTEKIFHR 395 (460)
Q Consensus 387 ~~a~~~~~~ 395 (460)
++|..++++
T Consensus 303 ~~A~~~~~~ 311 (327)
T 3cv0_A 303 DLVELTYAQ 311 (327)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 666655543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=8.9e-17 Score=140.76 Aligned_cols=251 Identities=10% Similarity=0.051 Sum_probs=139.0
Q ss_pred HHHHHhhCHHHHHHHHHhcccCCCch--hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchH
Q 012577 68 DLIAKLRGLQKAESYIQKIPESFRGE--VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKK 145 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 145 (460)
+-....|+++.|+..++.+....|+. .....+.++|...|+++.|+..++. . -
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~--------------------- 61 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S--------------------- 61 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S---------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C---------------------
Confidence 34455677777777776665543432 2344556677777777777764432 1 1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|++++|++.+++
T Consensus 62 -------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 62 -------------APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp -------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred -------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 2333444444444555555555555555544443222 233344444445555555555555443
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH
Q 012577 225 GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDV---CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
+.+...+..++..+.+.|++++|...++.+.. .|+... ....+..+...|++++|..+|+++.+..+ .+..
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~ 201 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLL 201 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHH
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHH
Confidence 22334444444455555555555554444433 222211 11222333445677777777777776633 3667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHHHhC
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK-ADSILLKAQQQN 364 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~ 364 (460)
.++.+..++.+.|++++|...++++.+.. +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 77777777777777777777777777653 4466777777777777777755 456777776654
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=173.08 Aligned_cols=149 Identities=16% Similarity=0.229 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKD---KGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
..+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|. ++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 5899999999999999999999 9999999999999999999999999
Q ss_pred HHHHhhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHH
Q 012577 169 IDIKGQSNDL-TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH------RWTCRLLLPL 241 (460)
Q Consensus 169 i~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 241 (460)
|+++++.|+. +.|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999998765543 444444444 3344443 4455566777
Q ss_pred HHhcC
Q 012577 242 YAELG 246 (460)
Q Consensus 242 ~~~~~ 246 (460)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77655
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.1e-14 Score=139.30 Aligned_cols=385 Identities=11% Similarity=0.003 Sum_probs=275.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHH-HHhhCHHHHHH----H
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLI-AKLRGLQKAES----Y 82 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~ 82 (460)
...++++..+ ..|.+...+...+....+.|++++|..+|+.+.... |+...+...+... ...|+.+.|.+ +
T Consensus 31 a~~~~e~al~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 31 ARKTYERLVA-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 3445555544 456688888999999999999999999999998764 4666666666533 34577766654 6
Q ss_pred HHhccc----CCCchhHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH----------
Q 012577 83 IQKIPE----SFRGEVVYRTLLANCVA---------GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK---------- 139 (460)
Q Consensus 83 ~~~~~~----~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---------- 139 (460)
|+.... ..++...|...+....+ .|+++.|..+|++.++....+....|........
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHH
Confidence 666432 23456778887776554 6889999999999988311111233333222111
Q ss_pred ---hcCc-hHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHhhc----CCh----hHHHHHHHHHHh
Q 012577 140 ---RLDK-KKVADVLLLME------KEN---VKLT--------QFSYKILIDIKGQS----NDL----TGMDQVVEAMKS 190 (460)
Q Consensus 140 ---~~~~-~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~ 190 (460)
+.+. ..|..++..+. +.. ++|+ ...|...+...... ++. +.+..+|++...
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 1112 44555555422 111 3444 24555555433322 233 377889999887
Q ss_pred CCCCCCHHHHHHHHHHHHh-------CCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 012577 191 EGIEPDSSTQAILAKHYVS-------GGRKE-------KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 191 ~g~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
.. +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+
T Consensus 267 ~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 267 VL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 63 5578889888888875 79987 999999999863233467889999999999999999999999
Q ss_pred Hhcc-CCC-H-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCC
Q 012577 257 LCES-NPW-L-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHKMLSKGKDLVKQMAESGCHI 332 (460)
Q Consensus 257 ~~~~-~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~ 332 (460)
.... .|+ . ..|...+..+.+.|++++|.++|++..+.... +...|...+.. +...|+.++|..+|+...+.. +.
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~ 423 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GD 423 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TT
T ss_pred HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CC
Confidence 8776 443 2 47888899899999999999999999886332 33334333222 346899999999999998863 55
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM--FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
+...|..++..+.+.|+.++|..+|+++....+..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999886555553 457888888889999999999999999875
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=7.9e-17 Score=144.18 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=82.8
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..+.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~------------ 213 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLG------------ 213 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH------------
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHH------------
Confidence 555666666666666666543 33556666666666666666666666666655422 1333444444
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 252 ARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
..+...|++++|...++++.+..+. +..++..+...|...|++++|...++.+.+....
T Consensus 214 --------------------~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 214 --------------------ATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred --------------------HHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4444444555555555544443221 3445555555555555555555555555543211
Q ss_pred C-----------CHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 332 I-----------GPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 332 ~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
. +..++..+..++.+.|++++|..++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 245555566666666666666665543
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1e-15 Score=144.43 Aligned_cols=354 Identities=9% Similarity=-0.076 Sum_probs=189.1
Q ss_pred hhhhHHHHHHHHHhhCHHHHHHHHHhcccC---------CC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC------
Q 012577 60 ERDYASCLDLIAKLRGLQKAESYIQKIPES---------FR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG------ 123 (460)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g------ 123 (460)
...|+.+...+...|++++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666677777777777766653211 12 24566667777777777777777766654320
Q ss_pred CC-CChhhhHHHHHHHHhcC--c-hHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhhcCChhHHHHHHHHHHhCCCCCC
Q 012577 124 FP-VTSFACNQLLILYKRLD--K-KKVADVLLLMEKENVKLTQFSYKILIDI---KGQSNDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 124 ~~-~~~~~~~~ll~~~~~~~--~-~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~~~ 196 (460)
.. ....+++....++...+ + ++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01 12234444433444333 2 66777777666553 2234444443333 334556666777776666543 334
Q ss_pred HHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHH
Q 012577 197 SSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAA 270 (460)
Q Consensus 197 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l 270 (460)
..++..+...+.. .+++++|.+.+++...... .+..++..+...|...|++++|...++.... .| +..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 5555555444433 3455667777766665433 2455666677777777777777777766544 34 33344444
Q ss_pred HHHHHc-------------------cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 271 IEAWGK-------------------LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 271 i~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
...|.. .+..+.|...++...+..+. +..++..+...|...|++++|...|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 444322 12345666667666655432 4566777778888888888888888887765322
Q ss_pred CCH--HHHHHHHH-HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 332 IGP--LAWDALVK-LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 332 ~~~--~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
+.. ..+..+.. .....|+.++|+..|.+..+.. |+...... ....+.+++++..+.+ +.+..+|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~ 433 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEAL 433 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHH
Confidence 211 11222222 2345677888888887776533 43222211 1233445555555554 5566677
Q ss_pred HHHHHHHHhcCC--chhhhHHHHH
Q 012577 409 QTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 409 ~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
..|...|...|+ .|...+++-.
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777776 4555554433
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=9.1e-15 Score=146.10 Aligned_cols=377 Identities=11% Similarity=0.061 Sum_probs=195.5
Q ss_pred HHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhccc-CCCChhhhHHHHHHHHHhhCHHHHHHHH
Q 012577 8 IHSTLTKYAEE---GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKK-LDFIERDYASCLDLIAKLRGLQKAESYI 83 (460)
Q Consensus 8 ~~~~l~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (460)
...-|-+|... ....+|+.+...++.+...|.+.+|+++++.+...+. +.-+....+.++....+. +.....++.
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 34444555333 3457889999999999999999999999999884431 122334444455444444 444444444
Q ss_pred HhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH
Q 012577 84 QKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ 162 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~ 162 (460)
+++.. .+ ...+...+...|.+++|..+|++... .....+.++. ..++ ++|.++.++. -+.
T Consensus 1045 ~kLd~--~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p 1105 (1630)
T 1xi4_A 1045 NRLDN--YD---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEP 1105 (1630)
T ss_pred HHhhh--cc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCH
Confidence 44432 11 22244555556666666666665310 1111122211 2222 4444444422 123
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-------------
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK------------- 229 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------- 229 (460)
.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++|....+....
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 44555555555555555555555332 34445555555555555555555555544443211
Q ss_pred -------------CCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 012577 230 -------------EHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 230 -------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 296 (460)
++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++..
T Consensus 1180 l~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred hcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 12223333444444444444444444432 234444444444444444444444331
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +.....|+-+
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftEL 1320 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTEL 1320 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHH
Confidence 334444444444444444444443322 22345566677778888888888888887765443 2233455555
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHHcCCCc------cHHHHHHHHHHHHhcCCchhhhHHHHHh
Q 012577 377 MDQYAKR--GDIHSTEKIFHRMRQVGYVA------RFKQFQTLVQAYINAKTPAYGIRDRMRA 431 (460)
Q Consensus 377 ~~~~~~~--g~~~~a~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~g~~~~~~~~~m~~ 431 (460)
..+|++- ++..++.+.|..- .+++| +...|..++-.|.+.|+...++...|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 5555553 3444444444422 22332 4667888888888888865555544443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.3e-16 Score=138.11 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=164.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE-HRWTCRLLLPLY 242 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 242 (460)
....+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|++.++++...+..| +...+..+..++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 3445677888888888888766541 25677778888888888888888888888887766444 445566667888
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHH---HHHHHHHHhcCCHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHY---TALLKVYADHKMLSKGK 319 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~ 319 (460)
...|++++|...++. ..+...+..++..+.+.|++++|.+.|+.+.+.. |+.... ..++..+...|++++|.
T Consensus 112 ~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 888888888888876 4566677888888888888888888888887754 343211 12233444557888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS-TEKIFHRMRQ 398 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 398 (460)
.+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.+..+- +..++..++..+...|+.++ +.++++++.+
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888876 4667788888888888888888888888888776543 44567777778888888765 5678888877
Q ss_pred cC
Q 012577 399 VG 400 (460)
Q Consensus 399 ~~ 400 (460)
..
T Consensus 264 ~~ 265 (291)
T 3mkr_A 264 AH 265 (291)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=168.56 Aligned_cols=152 Identities=11% Similarity=0.096 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHH---hcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMS---KTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
-..+|+++|++||+.|++++|.++|++|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCh-hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc------HHHHHHHH
Q 012577 340 LVKLHVEGGEV-EKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR------FKQFQTLV 412 (460)
Q Consensus 340 li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~l~ 412 (460)
+|.++++.|+. ++|.++|++|.+. |+.||..+|++++.+..+. .+++..+++ .-++.|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999985 7899999999765 7999999999998766554 333444444 3345554 55666677
Q ss_pred HHHHhcCC
Q 012577 413 QAYINAKT 420 (460)
Q Consensus 413 ~~~~~~g~ 420 (460)
+.|.+.+.
T Consensus 280 dl~s~d~~ 287 (1134)
T 3spa_A 280 DVYAKDGR 287 (1134)
T ss_dssp HHHCCCSC
T ss_pred HHHccCCC
Confidence 77777775
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.5e-15 Score=143.31 Aligned_cols=369 Identities=13% Similarity=0.024 Sum_probs=242.9
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhc----cc---CCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC------
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETN----KK---LDFIERDYASCLDLIAKLRGLQKAESYIQKIPES------ 89 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 89 (460)
....++.+...+...|++++|++.|+...+. .. .+....+|+.+...|...|++++|...+++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4456778888888999999999999876542 10 1223456888999999999999999998875332
Q ss_pred --C-CchhHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH---hcCc-hHHHHHHHHHHHcCCCC
Q 012577 90 --F-RGEVVYRTLLANCVA--GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK---RLDK-KKVADVLLLMEKENVKL 160 (460)
Q Consensus 90 --~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---~~~~-~~a~~~~~~~~~~~~~~ 160 (460)
. ....++..+..++.. .+++++|...|++..+.. |-++..+..+..++. ..+. ++|.+.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1 124566666555544 457999999999998864 224555555544433 3344 77888888887764 45
Q ss_pred CHHHHHHHHHHHhh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 161 TQFSYKILIDIKGQ----SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 161 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
+...+..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|+..+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 56666666555443 567899999999988765 567888999999999999999999999999886543 556676
Q ss_pred HHHHHHHhc-------------------CChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc
Q 012577 237 LLLPLYAEL-------------------GKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK 295 (460)
Q Consensus 237 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 295 (460)
.+..+|... +..+.|...++.... .| ....+..+...|...|++++|...|++..+...
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 666665432 234556666665544 34 455788899999999999999999999987654
Q ss_pred CcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 296 KLSTK--HYTALLK-VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 296 ~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
.|... .+..+.. .+...|++++|...+++..+. .|+....... ...+.++++...+.++ .+..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~p--~~~~~ 432 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKNG--ADSEA 432 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHCC---CTTH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhCC--CCHHH
Confidence 43221 2233332 345689999999999999884 4554332222 2344566666666553 44568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQVG-YVARFKQF 408 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~ 408 (460)
|..+..+|...|++++|++.|++..+.+ ..|+..+|
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999865 23454444
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.4e-15 Score=131.03 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CC----HHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK--EH----RWTC 235 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 235 (460)
...|..+...+...|++++|.++|++..+.. .+..++..+..++...|++++|+..+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778888888999999999999888776 77888888888999999999999999888764321 12 4678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 314 (460)
..+..++...|++++|...++.... .|+. ..+.+.|++++|...++.+....+. +...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 8888888899999999988887665 4543 3456677889999999988876433 56778888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
+++|...++.+.+.. +.+..++..+...|.+.|++++|...++++.+..+ .+...|..+..++.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998864 55788899999999999999999999999887653 346778888899999999999999999
Q ss_pred HHHHc
Q 012577 395 RMRQV 399 (460)
Q Consensus 395 ~m~~~ 399 (460)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=5.5e-15 Score=128.49 Aligned_cols=251 Identities=9% Similarity=-0.020 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH--RWTCRLLLP 240 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 240 (460)
..+......+...|++++|++.|++..+.. +.+...+..+..++...|++++|+..++++.+....++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556778889999999999999998774 34566888888899999999999999999988432222 345788899
Q ss_pred HHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 241 LYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
.+...|++++|...++.... .| +...+..+...|...|++++|...|++..+..+. +...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765 34 5668899999999999999999999999886433 667777777344445699999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcC------HHHHHHHHHHHHhcCCHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPM------FSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a 389 (460)
...++.+.+.. +.+...+..+...+...|+ +++|...++++.+...-.|+ ...|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999873 4557888888888888888 88899999998775433344 25777888999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 390 EKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 390 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.+.|+++.+.. |.+...+..+......
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC-----
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhhhcc
Confidence 99999999876 5566666665544433
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=5.8e-15 Score=137.82 Aligned_cols=346 Identities=11% Similarity=0.007 Sum_probs=240.5
Q ss_pred HHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH---HHHHHHHHhcccCCCchhHHHHHHHHHHc
Q 012577 29 LAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL---QKAESYIQKIPESFRGEVVYRTLLANCVA 105 (460)
Q Consensus 29 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~ll~~~~~ 105 (460)
.+...+.+.|++++|+++|+...+.+ +...+..+...|...|+. ++|...|++.... +...+..|...+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 35666778899999999999988765 445666677777778888 8999999998864 66677777775555
Q ss_pred CC-----CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012577 106 GN-----NVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK----KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176 (460)
Q Consensus 106 ~~-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (460)
.+ ++++|...|++..+.|. ...+..|...|...+. .++.+.+......|. ...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 54 78999999999999773 3367777777766554 455566666665552 445666777888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChh
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG---RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL----GKAD 249 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 249 (460)
.++++......+.+.-...+...+..|...|...| +.++|+..|++..+.|.. +...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 66655555333332211233348888999999999 999999999999998754 555556777777655 7999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 012577 250 QVARIWKLCESNPWLDVCMAAIEA-W--GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK-----MLSKGKDL 321 (460)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~ 321 (460)
+|..+|+... ..+...+..+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|...
T Consensus 235 ~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 235 TAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999999988 6677788888877 4 56899999999999998876 6677888888887 55 99999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK----RGDIHSTEKIF 393 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 393 (460)
|+... . -++..+..+...|.. ..++++|..+|++..+.. .| .....|...|.. ..+.++|..+|
T Consensus 310 ~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 310 FEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QN--SADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CT--THHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hH--HHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 99887 4 367788888888876 348999999999987643 23 355566666664 45899999999
Q ss_pred HHHHHcC
Q 012577 394 HRMRQVG 400 (460)
Q Consensus 394 ~~m~~~~ 400 (460)
+...+.|
T Consensus 382 ~~A~~~g 388 (452)
T 3e4b_A 382 QLAKAQD 388 (452)
T ss_dssp HHHHTTC
T ss_pred HHHHHCC
Confidence 9999988
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.3e-12 Score=130.88 Aligned_cols=339 Identities=10% Similarity=0.098 Sum_probs=254.2
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 109 (460)
+...+...|.+++|..+|+... ......+.++ -..+++++|.++.+++ .+..+|..+..++.+.|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLi---e~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD------VNTSAVQVLI---EHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHH---HHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCH
Confidence 4555667888888888887752 1112222232 2778899999988876 3477899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 110 KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 110 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
++|++.|.+. -|...|..++..+.+.|+ +++.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999663 378888899999999999 99999998777654 33333445889999999988544332
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHH
Q 012577 189 KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCM 268 (460)
Q Consensus 189 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 268 (460)
. .++...|..+...|...|++++|..+|... ..|..+..+|.+.|+++.|.+.+++. .+..+|.
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWk 1254 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWK 1254 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHH
Confidence 2 466777888999999999999999999985 47889999999999999999999875 5668899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG- 347 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 347 (460)
.+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-....|+-+...|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 99999999999999988776432 366778899999999999999999998887654 44556776677777654
Q ss_pred -CChhhHHHHHHHHHHhCCCCc------CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHcCCCccHHH
Q 012577 348 -GEVEKADSILLKAQQQNKFKP------MFSSYMLIMDQYAKRGDIHSTEKI-------------FHRMRQVGYVARFKQ 407 (460)
Q Consensus 348 -~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~m~~~~~~~~~~~ 407 (460)
++..++.++|..- -.+.| +...|..++-.|.+.|+++.|... |++... -..|+..
T Consensus 1329 peklmEhlk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~el 1403 (1630)
T 1xi4_A 1329 PQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVEL 1403 (1630)
T ss_pred HHHHHHHHHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHH
Confidence 4555555555532 22322 356788999999999999988832 222221 2456777
Q ss_pred HHHHHHHHHhcC
Q 012577 408 FQTLVQAYINAK 419 (460)
Q Consensus 408 ~~~l~~~~~~~g 419 (460)
|...+.-|...+
T Consensus 1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhhC
Confidence 777777777555
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.1e-13 Score=120.42 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
+..++..+...+...|++++|.+.|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5567777888888889999999999888873 456778888888888 899999999999888876 567788
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH
Q 012577 237 LLLPLYAE----LGKADQVARIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV 308 (460)
Q Consensus 237 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 308 (460)
.+...|.. .+++++|...|+......+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888888 89999999998887776677888888888888 899999999999888865 56677788888
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 309 YAD----HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 309 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
|.. .+++++|...++...+.+ +...+..+...|.. .+++++|.+.|++..+.. | ...+..+...|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C-HHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C-HHHHHHHHHHH
Confidence 887 889999999999988864 56778888888888 899999999999887653 2 55777788888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 012577 381 AK----RGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 381 ~~----~g~~~~a~~~~~~m~~~~ 400 (460)
.+ .+++++|.+.|++..+.|
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 88 899999999999998876
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=4.5e-15 Score=124.16 Aligned_cols=210 Identities=15% Similarity=-0.002 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL 238 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (460)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4555566666667777777777777777766554 445666666777777777777777777776665432 44555555
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 239 LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
..++...+.. .+. .+...|++++|...|++..+..+. +...+..+...+...|++++|
T Consensus 80 g~~~~~~~~~------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 80 SEAYVALYRQ------------AED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHT------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhhh------------hhh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHH
Confidence 5555555000 000 000115555555555555543322 344455555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
...|++..+.. .+...+..+..+|...|++++|+..|+++.+..+ .+...+..+..++.+.|++++|++.+++.
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555544 4455555555555555555555555555554432 22344455555555555555555555543
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=6.6e-15 Score=123.16 Aligned_cols=188 Identities=14% Similarity=0.024 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
.+..+...+...|++++|...|+.... .| +...+..+...+.+.|++++|...|++..+..+. +...+..+...+..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 333444444444444444444443322 22 3334555555555566666666666665554332 45556666666666
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 312 H-----------KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 312 ~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
. |++++|...++...+.. +-+...+..+...+...|++++|+..|+++.+.. .+...+..+..++
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~ 161 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELY 161 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHH
Confidence 6 99999999999999874 4568899999999999999999999999998875 5677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHH
Q 012577 381 AKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRD 427 (460)
Q Consensus 381 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~ 427 (460)
...|++++|+..|++..+.. |.+...+..+...+...|+ .+...++
T Consensus 162 ~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999986 6788899999999999998 4444443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=5.2e-14 Score=127.39 Aligned_cols=248 Identities=8% Similarity=-0.005 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR-KEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
...|..+...+.+.|++++|++.++++.+.. +-+..+|+.+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3467778888889999999999999998775 5568889999999999996 99999999999887654 6788899999
Q ss_pred HHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh-cCCHHH
Q 012577 241 LYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD-HKMLSK 317 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~ 317 (460)
++...|++++|+..|+++.. .| +...|..+..++.+.|++++|+..|+++++..+. +...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998766 44 6678999999999999999999999999987665 78889999999998 666577
Q ss_pred H-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC------
Q 012577 318 G-----KDLVKQMAESGCHIGPLAWDALVKLHVEGG--EVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG------ 384 (460)
Q Consensus 318 a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 384 (460)
| +..++..++.. +-+...|..+...+...| ++++|.+.+.++ +. ...+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 48888888864 457788988888888888 689999988887 32 2345677888888888864
Q ss_pred ---CHHHHHHHHHHH-HHcCCCccHHHHHHHHHHHHh
Q 012577 385 ---DIHSTEKIFHRM-RQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 385 ---~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~ 417 (460)
..++|+++|+++ .+.+ +.....|..+...+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 358999999998 6654 5556677777766654
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.8e-14 Score=122.84 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=73.6
Q ss_pred HhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 243 AELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
...|++++|...++.... .| +...+..+...+...|++++|...++++.+..+. +..++..+...|...|++++|..
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence 334444555555444433 22 2334555666666666667777766666665432 55667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
.++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777776653 445666777777777777777777777776554
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.1e-13 Score=118.71 Aligned_cols=201 Identities=10% Similarity=-0.033 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3456667777777777777777777776653 44566777777777777777777777777665432 234455555555
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-CHHHHHHHHHHHHhcCCHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL-STKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
|...|++++|...++.+ .+.+..| +...+..+...+...|++++|..
T Consensus 115 ~~~~g~~~~A~~~~~~~--------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEA--------------------------------SQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HHHTTCHHHHHHHHHHH--------------------------------TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH--------------------------------HhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555444 3311111 23344444455555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++.+.+.. +.+...+..+...+...|++++|..+++++.+.. ..+...+..+...+.+.|++++|.++++++.+.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555554432 2334455555555555555555555555554432 123344455555555555555555555555554
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=2.3e-13 Score=116.78 Aligned_cols=205 Identities=9% Similarity=0.027 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
..+..+...+...|++++|...++.+.. . .+...+..+...+...|++++|.+.++++.+.... +...+..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHH
Confidence 3444555555555666666655555433 2 24556677777788888888888888888776443 6788899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 311 DHKMLSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 389 (460)
..|++++|..+++.+.+.+..| +...+..+...+...|++++|.+.++++.+..+ .+...+..+...+.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998733334 567888899999999999999999999987653 3567888999999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHH
Q 012577 390 EKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQ 443 (460)
Q Consensus 390 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~ 443 (460)
...++++.+.. +.+...+..+...+...|+ .+...++.+.+. .|+...+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 99999999875 6678889999999999999 566777777653 455544433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=9.1e-13 Score=114.51 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=92.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE----LG 246 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 246 (460)
.+++++|.+.|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 444444444444444332 33444444444444 444444444444444432 33344444444444 44
Q ss_pred ChhHHHHHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh----cCCHHHH
Q 012577 247 KADQVARIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD----HKMLSKG 318 (460)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 318 (460)
++++|...|++.....+...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|
T Consensus 129 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 444444444444333334444444444544 556666666666555542 34555566666666 6666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHh
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQ 363 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 363 (460)
...++...+.+ +...+..+...|.+ .+++++|.+.|++..+.
T Consensus 206 ~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 206 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 66666666653 25555666666666 66777777777666554
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=4.1e-14 Score=120.62 Aligned_cols=202 Identities=10% Similarity=0.019 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..++++.+... .+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l-- 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGA-- 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHH--
Confidence 33455556666666666666666666666543 34456666666666666666666666666654432 133444444
Q ss_pred HHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
...+...|++++|.+.++++.+.... +...+..+...+...|++++|..
T Consensus 98 ------------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 98 ------------------------------GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp ------------------------------HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ------------------------------HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 44444455555555555554443322 44455555555555666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+..+ .+...+..+..++.+.|++++|.+.++++.+..
T Consensus 147 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 147 YLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 666555542 33455555566666666666666666666554432 234455556666666666666666666666543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.8e-13 Score=115.00 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------- 73 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------------- 73 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------
Confidence 3345555555555566666666665555442 33445555555555555555555555555544321
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcccCc-CHHHHHHHHHHHHhcCCHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKL-NKVEEAEAVFKRMSKTWKKL-STKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 319 (460)
.+...+..+...+... |++++|...++.+.+.+..| +...+..+...+...|++++|.
T Consensus 74 --------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 74 --------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp --------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 1233444445555555 55555555555555421112 2345555556666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
..++.+.+.. +.+...+..+...+.+.|++++|.++++++.+..+ ..+...+..+...+...|+.++|..+++.+.+.
T Consensus 134 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666665542 33455566666666666666666666666655432 023344555555566666666666666666544
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=4.5e-13 Score=112.56 Aligned_cols=206 Identities=10% Similarity=0.015 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
..+..+...+...|++++|...++.... .| +...+..+...+...|++++|.+.++++.+.... +..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3444555555555555555555554433 22 3456677777788888888888888888876443 6788999999999
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 012577 311 DH-KMLSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 311 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (460)
.. |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+..+ .+...+..+...+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHH
Confidence 99 99999999999998833233 367888999999999999999999999987653 346788899999999999999
Q ss_pred HHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 389 TEKIFHRMRQVGYV-ARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 389 a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
|.+.++++.+.. + .+...+..+...+...|+ .+..+++.+.. ..|+......+
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~ 221 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 999999999875 5 677888888888888888 45555666554 34665544433
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=6.4e-14 Score=119.42 Aligned_cols=201 Identities=14% Similarity=0.049 Sum_probs=124.3
Q ss_pred CChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 126 VTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204 (460)
Q Consensus 126 ~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 204 (460)
.....+..+...+...|+ ++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667777778888888 89999999998764 5578889999999999999999999999998765 55788999999
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHH
Q 012577 205 KHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAE 284 (460)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 284 (460)
..+...|++++|...++++.+... .+...+..+...+...|++++|...++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-------------------------- 151 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRA-------------------------- 151 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHH--------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH--------------------------
Confidence 999999999999999999887643 24455555555555555555555555543
Q ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 285 AVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 285 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 152 ------~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 152 ------VELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp ------HHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ------HHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 33221 134445555555555555555555555555442 334555555555666666666666666655544
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.3e-13 Score=119.85 Aligned_cols=175 Identities=9% Similarity=-0.045 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|..+...+...|++++|++.|++..+.. +.+..++..+...|...|++++|+..|++..+... .+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 22334444444444444444444444444443311 123333333312222
Q ss_pred cCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC---HHHHHHHHHHHHhcc-cCcC------HHHHHHHHHHHHhc
Q 012577 245 LGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNK---VEEAEAVFKRMSKTW-KKLS------TKHYTALLKVYADH 312 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~ 312 (460)
.+++++|...|+.... .| +...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 2344444444444332 22 23334444444444444 444555555444321 1111 14556666666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
|++++|...++.+.+.. +.+......+..
T Consensus 235 ~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 235 RDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 77777777777766653 334444444433
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2.3e-13 Score=123.14 Aligned_cols=246 Identities=9% Similarity=-0.023 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
...|..+...+.+.|++++|++.|++.++.. +-+...|+.+..++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------------------------------P~~~~a~~~~g~~l 141 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------------------------------AANYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------------------------------ccCHHHHHHHHHHH
Confidence 4556666667777777777777777766653 22344555555555
Q ss_pred hhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 173 GQSND-LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 173 ~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
...|+ +++|++.|+++.+.. +.+...|..+..++...|++++|+..|+++++.+.. +...|..+..++...|++++|
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTH
T ss_pred HHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHH
Confidence 55554 666666666655543 334555666666666666666666666666554432 445555666666666666666
Q ss_pred HHHHHHhcc-CC-CHHHHHHHHHHHHc-cCCHHHH-----HHHHHHHHhcccCcCHHHHHHHHHHHHhcC--CHHHHHHH
Q 012577 252 ARIWKLCES-NP-WLDVCMAAIEAWGK-LNKVEEA-----EAVFKRMSKTWKKLSTKHYTALLKVYADHK--MLSKGKDL 321 (460)
Q Consensus 252 ~~~~~~~~~-~~-~~~~~~~li~~~~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~ 321 (460)
+..++++.. .| +...|+.+...+.+ .|..++| +..|++.++..+. +...|..+...+...| ++++|.+.
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHH
Confidence 666655444 33 44456666666666 4443555 4667776665443 5667777777777776 57777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCC---------ChhhHHHHHHHH-HHhCCCCcCHHHHHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGG---------EVEKADSILLKA-QQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 380 (460)
+..+ +. .+.+...+..+...|.+.| .+++|.++++++ .+.++..+ ..|..+...+
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~--~~w~~~~~~l 363 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK--EYWRYIGRSL 363 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH--HHHHHHHHHH
Confidence 7776 32 3445677777777777653 247788888887 55443222 3444444443
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=8e-14 Score=121.24 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
..+|..+...+...|++++|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444444445555555555555555544432 22344444445555555555555555554444
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.9e-13 Score=116.84 Aligned_cols=223 Identities=11% Similarity=0.034 Sum_probs=142.0
Q ss_pred hhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 012577 173 GQSNDLTGMDQVVEAMKSEGI---EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (460)
...|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+... .+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 344667777777777765421 11345666667777777777777777777766543 24566677777777777777
Q ss_pred HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 250 QVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 250 ~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+|...++.... .| +...+..+...|...|++++|...|+.+.+.. |+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 77777776554 33 45567777777777777777777777777643 3333344444455566777888887777666
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-C-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-K-PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.. +++...+. ++..+...++.++|.+.+.++....+- . .+...+..+...+.+.|++++|...|+++.+..
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 52 34444433 555666667777777777766432210 0 013566777777888888888888888877654
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.5e-13 Score=126.67 Aligned_cols=298 Identities=10% Similarity=-0.042 Sum_probs=182.0
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDI 171 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (460)
....+......+...|++++|...|++..+.+.. +.... ..++..+...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~------------------------------~~~~~~l~~~ 56 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTL------------------------------SAIYSQLGNA 56 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHH------------------------------HHHHHHHHHH
Confidence 4455666677777888888888888877765311 11000 1234444445
Q ss_pred HhhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSE----GIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EH----RWTCRLLLPL 241 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~ 241 (460)
+...|++++|...+++.... +-.| ...++..+...+...|++++|...+++..+.... ++ ..++..+...
T Consensus 57 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 57 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 55555555555555443321 1011 1334444555555555555555555544432100 01 2345555555
Q ss_pred HHhcCC--------------------hhHHHHHHHHhcc----CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 012577 242 YAELGK--------------------ADQVARIWKLCES----NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293 (460)
Q Consensus 242 ~~~~~~--------------------~~~a~~~~~~~~~----~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (460)
|...|+ +++|...++.... .+ ...++..+...|...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555565 5555555544322 11 1235677777888888888888888877653
Q ss_pred ccC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 294 WKK-LS----TKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 294 ~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
... ++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|.+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 211 11 23678888889999999999999888765310 011 467788888999999999999999888664
Q ss_pred CCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCC
Q 012577 364 NKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV----GY-VARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 364 ~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~ 420 (460)
..-.++ ..++..+...|.+.|++++|.+.+++..+. +. +....++..+...+...|+
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 322222 456778888999999999999999987653 21 2235577778888888886
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=1.3e-10 Score=112.35 Aligned_cols=432 Identities=9% Similarity=0.032 Sum_probs=294.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC---HHHHHHHHHhc
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG---LQKAESYIQKI 86 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~ 86 (460)
..+++-+.. .+.+......++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.++ ++.+..+|+..
T Consensus 53 ~~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344544443 4579999999999999999999999999999887 47778888888888888888 99999999998
Q ss_pred ccCC---CchhHHHHHHHHHHcCCCH--------HHHHHHHHHHHh-CCC-CCC-hhhhHHHHHHHHhc---------Cc
Q 012577 87 PESF---RGEVVYRTLLANCVAGNNV--------KKAEEVFNRMKD-KGF-PVT-SFACNQLLILYKRL---------DK 143 (460)
Q Consensus 87 ~~~~---~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~g~-~~~-~~~~~~ll~~~~~~---------~~ 143 (460)
.... |++..|...+....+.++. +.+.++|+..+. .|. .|+ ...|...+...... +.
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8876 8888998888766554443 345578887654 465 443 46777777654321 22
Q ss_pred -hHHHHHHHHHHHcCCCCCHHHHHH---HHHHHh----------hcCChhHHHHHHHHHHh--CCC----C---------
Q 012577 144 -KKVADVLLLMEKENVKLTQFSYKI---LIDIKG----------QSNDLTGMDQVVEAMKS--EGI----E--------- 194 (460)
Q Consensus 144 -~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~----------~~~~~~~a~~~~~~m~~--~g~----~--------- 194 (460)
+.+..+|+.........-..+|.. ...... ...+++.|...+.++.. .++ +
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 567788888875322212233322 222110 11233445555554321 111 1
Q ss_pred --C-----C---HHHHHHHHHHHHhCC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHH
Q 012577 195 --P-----D---SSTQAILAKHYVSGG-------RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA-RIWK 256 (460)
Q Consensus 195 --~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~ 256 (460)
| + ...|...+..--..+ ..+.+..+|++++..- +-....|...+..+...|+.++|. .+++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 1 134555554333322 1234567788887653 336778888888888899999996 9998
Q ss_pred Hhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc---------CcC------------HHHHHHHHHHHHhcC
Q 012577 257 LCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK---------KLS------------TKHYTALLKVYADHK 313 (460)
Q Consensus 257 ~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~li~~~~~~g 313 (460)
+... .| +...|...+...-+.|+++.|.++|+.+.+... .|+ ...|...+....+.|
T Consensus 369 rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 369 LGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 7655 45 455677788888899999999999999886421 132 346888888888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG-GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKI 392 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 392 (460)
..+.|..+|..+.+.-.......|...+..-.+. ++.+.|..+|+..++..+ -+...|...+......|+.+.|..+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998761122344454444444444 459999999999998754 3445677888888889999999999
Q ss_pred HHHHHHcCCC--ccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 012577 393 FHRMRQVGYV--ARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQVAQVDAFR 451 (460)
Q Consensus 393 ~~~m~~~~~~--~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 451 (460)
|++....... -....|..+++--.+.|+ .+..+.+++... .|+......+ ++.|+
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f--~~ry~ 585 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEF--TNKYK 585 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHH--HHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHH--HHHhc
Confidence 9999986522 245689999988889998 577778777774 4666666666 55553
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1.7e-13 Score=126.84 Aligned_cols=271 Identities=10% Similarity=-0.055 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS----FACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILI 169 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (460)
..+..+...+...|++++|...|++..+.+.. +. ..+..+...|..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~----------------------------- 98 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFY----------------------------- 98 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHH-----------------------------
Confidence 34555667778888888888888888775321 21 233444444444
Q ss_pred HHHhhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----C-CCCCHHHHHHHH
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSE----GI-EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----N-LKEHRWTCRLLL 239 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 239 (460)
.|++++|.+.+++..+. +- +....++..+...|...|++++|...+++..+. + ......++..+.
T Consensus 99 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 99 -----LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 44444444444443321 00 111233444444455555555555554444322 0 011123444455
Q ss_pred HHHHhcCC-----------------hhHHHHHHHHhcc-------CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 012577 240 PLYAELGK-----------------ADQVARIWKLCES-------NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW 294 (460)
Q Consensus 240 ~~~~~~~~-----------------~~~a~~~~~~~~~-------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 294 (460)
..|...|+ +++|...+++... .+ ....+..+...|...|++++|...+++..+..
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 55555555 5555555443221 01 12356667777777888888888777766532
Q ss_pred cC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 295 KK-LS----TKHYTALLKVYADHKMLSKGKDLVKQMAESGCH-----IGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 295 ~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.. ++ ..++..+...|...|++++|...+++..+.... ....++..+...|...|++++|.+.++++.+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 11 236777888888888888888888877653110 114667778888888899999988888876542
Q ss_pred CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 365 KFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 365 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.-..+ ..++..+..+|.+.|++++|.+.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11111 346777888888999999999999988865
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=8.4e-12 Score=110.40 Aligned_cols=219 Identities=11% Similarity=-0.008 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hCCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYV-------SGGRK-------EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 456667777766665 34665 7888888888773112245577778888888
Q ss_pred cCChhHHHHHHHHhcc-CCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH-hcCCHHHHHH
Q 012577 245 LGKADQVARIWKLCES-NPW-LD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA-DHKMLSKGKD 320 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~ 320 (460)
.|++++|..+|++... .|+ .. .|..++..+.+.|++++|..+|++..+..+ ++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887665 342 33 688888888888889999999988887643 24455544433322 3689999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP--MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+|+...+. .+.+...|..++..+.+.|++++|..+|+++.....+.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998876 345788888889999999999999999999887543444 356788888888889999999999999887
Q ss_pred cC
Q 012577 399 VG 400 (460)
Q Consensus 399 ~~ 400 (460)
..
T Consensus 270 ~~ 271 (308)
T 2ond_A 270 AF 271 (308)
T ss_dssp HT
T ss_pred Hc
Confidence 63
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=1.1e-12 Score=122.38 Aligned_cols=322 Identities=13% Similarity=0.059 Sum_probs=213.4
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV---KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
+...+.+.|++++|.++|++..+. .+...+..|...|...|+. ++|...|++..+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 567778899999999999997654 3455566666777778888 9999999998864 5566666666454444
Q ss_pred -----c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 012577 143 -----K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT---GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 143 -----~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
+ ++|...|++..+.|. ++ .+..|...|...+..+ ++.+.+......| +...+..|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 3 789999999988773 33 5666777777665543 4555555555544 345666777788887755
Q ss_pred HHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhccC--CCHHHHHHHHHHHHcc----CCH
Q 012577 214 EKAE----AMLKEMEGDNLKEHRWTCRLLLPLYAELG---KADQVARIWKLCESN--PWLDVCMAAIEAWGKL----NKV 280 (460)
Q Consensus 214 ~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~----~~~ 280 (460)
+++. .+++..... ++..+..+...|...| +.++|...|+..... +....+..+...|... +++
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 5444 444444332 2337888999999999 899999999887663 3444447778888665 799
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChhhH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKV-Y--ADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG----GEVEKA 353 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a 353 (460)
++|...|+... .| +...+..|... + ...+++++|...|+...+.| +...+..+...|... .++++|
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999988 33 56677777776 4 46899999999999999887 677888888888732 299999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 354 DSILLKAQQQNKFKPMFSSYMLIMDQYAK----RGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.++|++.. . -+...+..+...|.. ..++++|..+|++..+.|. ......|...|..
T Consensus 307 ~~~~~~Aa--~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 307 EAHFEKAV--G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHTTT--T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHS
T ss_pred HHHHHHHh--C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHh
Confidence 99999876 2 245567777777766 3499999999999998873 3345556666654
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=3.6e-13 Score=120.62 Aligned_cols=274 Identities=11% Similarity=-0.037 Sum_probs=161.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (460)
.+......+...|++++|...|++..+.... +... -...+..+...+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~------------------------------~~~~~~~l~~~~~~ 55 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKT------------------------------LSAIYSQLGNAYFY 55 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHH------------------------------HHHHHHHHHHHHHH
Confidence 3445556677778888888888777765311 1100 01234444445555
Q ss_pred cCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh
Q 012577 175 SNDLTGMDQVVEAMKSE----GIE-PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EH----RWTCRLLLPLYAE 244 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 244 (460)
.|++++|.+.+++..+. +-. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 55555555555443321 101 11334445555555555555555555554331100 11 2244555555555
Q ss_pred cCC--------------------hhHHHHHHHHhcc----CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 012577 245 LGK--------------------ADQVARIWKLCES----NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 245 ~~~--------------------~~~a~~~~~~~~~----~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 296 (460)
.|+ +++|...++.... .+ ....+..+...+...|++++|...+++..+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 5555555544321 11 1235666777778888888888888776643111
Q ss_pred -----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC
Q 012577 297 -----LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366 (460)
Q Consensus 297 -----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (460)
....++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...++++.+...-
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1123677788888888999999888888765310 011 456777888888999999999998887654321
Q ss_pred CcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 367 KPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 367 ~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
..+ ..++..+...|.+.|++++|.+.+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 346777888889999999999999988864
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=9.7e-13 Score=120.43 Aligned_cols=228 Identities=10% Similarity=0.024 Sum_probs=172.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-C-----CHHHHH
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEG-IEP----DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-E-----HRWTCR 236 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 236 (460)
....+...|++++|.+.|++..+.- -.+ ...++..+...|...|++++|...+++..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5567788999999999999987641 012 2467888999999999999999999988753111 1 235778
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc----CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHh-----cccCcCHHHHH
Q 012577 237 LLLPLYAELGKADQVARIWKLCES----NPWL----DVCMAAIEAWGKLNKVEEAEAVFKRMSK-----TWKKLSTKHYT 303 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 303 (460)
.+..+|...|++++|...++.... .++. .++..+...|...|++++|.+.+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999886543 2222 3678889999999999999999998876 22133466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAES----GCHIGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
.+...|...|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++.. ........+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 8999999999999999999988653 111122345667788888888 777777776641 112233567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
...|.+.|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998875
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=1.3e-12 Score=120.40 Aligned_cols=269 Identities=12% Similarity=-0.037 Sum_probs=205.2
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLKE 230 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 230 (460)
.+....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456667778889999999999999999998764 333 357888999999999999999999987542 2122
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHHHHHccCC--------------------HH
Q 012577 231 -HRWTCRLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIEAWGKLNK--------------------VE 281 (460)
Q Consensus 231 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~--------------------~~ 281 (460)
...++..+...|...|++++|...++.... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245678888999999999999999886544 122 3367888899999999 99
Q ss_pred HHHHHHHHHHhc----c-cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChh
Q 012577 282 EAEAVFKRMSKT----W-KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 282 ~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~ 351 (460)
+|...+++..+. + ......++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999877643 1 111235688889999999999999999999875310 122 247888899999999999
Q ss_pred hHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCc-cHHHHHHHHHHHHhcCC--
Q 012577 352 KADSILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG----YVA-RFKQFQTLVQAYINAKT-- 420 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~l~~~~~~~g~-- 420 (460)
+|...+++..+..+-.++ ..++..+...+...|++++|.+.+++..+.. -.+ ...++..+...|...|+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988754321122 4577888999999999999999999887631 111 15678889999999999
Q ss_pred chhhhHHH
Q 012577 421 PAYGIRDR 428 (460)
Q Consensus 421 ~~~~~~~~ 428 (460)
.+...++.
T Consensus 325 ~A~~~~~~ 332 (406)
T 3sf4_A 325 QAMHFAEK 332 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555543
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=4.2e-13 Score=124.11 Aligned_cols=275 Identities=13% Similarity=-0.019 Sum_probs=181.7
Q ss_pred hhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-h----hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHH
Q 012577 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRG-E----VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL 135 (460)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 135 (460)
..+..+...+...|++++|...|++.....|+ . ..|..+...|...|++++|...|++..+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 34556777889999999999999997765443 2 468888999999999999999999876531
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhC
Q 012577 136 ILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE----G-IEPDSSTQAILAKHYVSG 210 (460)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~~~~~l~~~~~~~ 210 (460)
...++ .+....++..+...|...|++++|.+.+++..+. + .+....++..+...|...
T Consensus 117 ---~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 ---KSMND--------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ---HHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHccC--------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 00000 0111234555556666666666666666655432 1 011234556666666666
Q ss_pred CC-----------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc----CCC-
Q 012577 211 GR-----------------KEKAEAMLKEMEGD----NL-KEHRWTCRLLLPLYAELGKADQVARIWKLCES----NPW- 263 (460)
Q Consensus 211 ~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~- 263 (460)
|+ +++|+..+++..+. +. .....++..+...|...|++++|...+++... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 66666666655431 11 11123566666777777777777777765433 112
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-
Q 012577 264 ---LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-----LSTKHYTALLKVYADHKMLSKGKDLVKQMAESG----C- 330 (460)
Q Consensus 264 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~- 330 (460)
...+..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+.. .
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 225677788888888888888888877653221 124667788888999999999999988876531 0
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.....++..+...|...|++++|.+.++++.+..
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1123577788889999999999999999887643
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.7e-12 Score=118.80 Aligned_cols=303 Identities=12% Similarity=-0.017 Sum_probs=143.4
Q ss_pred CHHHHHHHHHH---HHhcccchhHHHHHHHHHhcccC-CCChh--hhHHHHHH--HHHhhCHHHHH-----------HHH
Q 012577 23 SRAEIALAMAN---LRTRRMYGKALQLSEWLETNKKL-DFIER--DYASCLDL--IAKLRGLQKAE-----------SYI 83 (460)
Q Consensus 23 ~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~-~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~ 83 (460)
+++.+...+.. ..+.+++++|..+++.+...-.. ..+.. .|-.++.. ..-.+.++.+. +.+
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 33444444443 34678999999999888664311 12222 22223222 11223344444 555
Q ss_pred HhcccCCCchhH------HHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-ChhhhHHHHHHHHhcCchHHHHHHHH
Q 012577 84 QKIPESFRGEVV------YRTLLANCVAGNNVKKAEEVFNRMKDKG----FPV-TSFACNQLLILYKRLDKKKVADVLLL 152 (460)
Q Consensus 84 ~~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~ll~~~~~~~~~~a~~~~~~ 152 (460)
+.+.....+... +......+...|++++|...|++..+.- -++ ...++..+...|...|
T Consensus 88 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~---------- 157 (383)
T 3ulq_A 88 LEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK---------- 157 (383)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 555432122111 2224556778889999999888887641 011 1233444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC--CC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE--GI----EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
++++|...+++..+. .. +....+++.+...|...|++++|+..|++..+.
T Consensus 158 ------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 158 ------------------------QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444444444443321 00 001233444444444444444444444444321
Q ss_pred CCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhcc------C-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 012577 227 NLK-EH----RWTCRLLLPLYAELGKADQVARIWKLCES------N-P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293 (460)
Q Consensus 227 ~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (460)
... ++ ..++..+..+|...|++++|...+++... . | ...++..+...|.+.|++++|...+++..+.
T Consensus 214 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 214 AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 000 00 12344444445555555555444443322 1 1 1224455555555555555555555554432
Q ss_pred c----cCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 294 W----KKLSTKHYTALLKVYADHKM---LSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 294 ~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
. .+.....+..+...+...|+ +++|..+++.. +..| ....+..+...|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 294 SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11111224455556666666 45555555444 2112 234555666667777777777777766654
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=2.1e-11 Score=107.88 Aligned_cols=186 Identities=10% Similarity=-0.009 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRW-TCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.... +.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777788877776311335567777777777778888888888877764322 222 677777777777888888888877
Q ss_pred hcc-CC-CHHHHHHHHHHH-HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-
Q 012577 258 CES-NP-WLDVCMAAIEAW-GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHI- 332 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~- 332 (460)
... .| +...|....... ...|++++|..+|+...+..+. +...|..++..+.+.|++++|..+|+...... ++|
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 655 23 333444333332 2368888999999888876443 67788888888888899999999999988863 344
Q ss_pred -CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC
Q 012577 333 -GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366 (460)
Q Consensus 333 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (460)
....|..++..+.+.|+.+.|..+++++.+..+-
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 4667888888888889999999999888776543
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=1.9e-12 Score=115.87 Aligned_cols=268 Identities=12% Similarity=-0.030 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCC-CCHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLK-EHRW 233 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 233 (460)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556778889999999999999998764 233 467888999999999999999999887543 111 1245
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHHHHHccCC--------------------HHHHHH
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIEAWGKLNK--------------------VEEAEA 285 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 285 (460)
++..+...+...|++++|...++.... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778889999999999999999887543 233 3367888889999999 999999
Q ss_pred HHHHHHhc----c-cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHH
Q 012577 286 VFKRMSKT----W-KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 286 ~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~ 355 (460)
.+++.... + ......++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99876542 1 111235678888999999999999999998865310 111 3478888899999999999999
Q ss_pred HHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCC--chhh
Q 012577 356 ILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV----GY-VARFKQFQTLVQAYINAKT--PAYG 424 (460)
Q Consensus 356 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~--~~~~ 424 (460)
.+++..+...-.++ ..++..+...+...|++++|...+++..+. +- .....++..+...|...|+ .+..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99988754321122 456788889999999999999999988753 11 1124578889999999999 4665
Q ss_pred hHHHHHh
Q 012577 425 IRDRMRA 431 (460)
Q Consensus 425 ~~~~m~~ 431 (460)
.+++...
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=1.8e-12 Score=121.81 Aligned_cols=195 Identities=10% Similarity=-0.056 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHH
Q 012577 196 DSSTQAILAKHYVSGGRK-EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEA 273 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~ 273 (460)
+...+..+..++...|++ ++|+..|++..+.... +...|..+..+|...|++++|...|+.... .|+...+..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444444444444 4444444444433211 233444444444444444444444443332 3333444444555
Q ss_pred HHcc---------CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCC---CC
Q 012577 274 WGKL---------NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH--------KMLSKGKDLVKQMAESGCH---IG 333 (460)
Q Consensus 274 ~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~---~~ 333 (460)
+... |++++|...|++..+..+. +...|..+..+|... |++++|...|+...+.. + .+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccC
Confidence 5555 6666666666666665433 556666677777666 77777777777777653 2 36
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHR 395 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 395 (460)
...|..+..+|...|++++|.+.|+++.+..+ .+...+..+..++...|++++|.+.+.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67777777777777777777777777766543 2334566666777777777777665443
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=6.9e-12 Score=101.78 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=56.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...|.+.|++++|...+......... +...+..+...+...++++.+...+....+.. +.+...+..+...|.
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3333344444444444444444444333222 33334444444444444444444444444431 233444444444444
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+.|++++|++.|+++.+..+ .+...|..+..+|.+.|++++|++.|++..+
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555555544444332 1233444444455555555555555554444
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=7.4e-12 Score=101.59 Aligned_cols=166 Identities=17% Similarity=0.050 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~- 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG- 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH-
Confidence 34455555666666666666666666655443 334555555555556666666666555555443322 233333444
Q ss_pred HHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
..+...++++.|...+....+..+. +...+..+...|.+.|++++|.+
T Consensus 81 -------------------------------~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 81 -------------------------------SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp -------------------------------HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------------HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHH
Confidence 4444445555555555544443222 44455555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.|++..+.. +.+..++..+..+|.+.|++++|.+.|+++.+
T Consensus 129 ~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 129 AYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555542 33455555555555555555555555555544
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=4e-13 Score=119.00 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC------C
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSE-------GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD------N 227 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 227 (460)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777888888888998888888887762 22334567788888888889999888888887653 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC---------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 012577 228 -LKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---------P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT--- 293 (460)
Q Consensus 228 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 293 (460)
.+....++..+...|...|++++|...++..... | ....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223456778888888889988888888765431 2 2335778888899999999999999988764
Q ss_pred ---ccCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCC-------CHHHHHHHHHHHHcCCChhhHHH
Q 012577 294 ---WKKL-STKHYTALLKVYADHKMLSKGKDLVKQMAESG-------CHI-------GPLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 294 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~~~~~~a~~ 355 (460)
+..| ...++..+...|...|++++|...++++.+.. ..+ ....+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 34567888899999999999999999887631 111 11223334444555677777778
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 356 ILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+....... ..+..++..+..+|.+.|++++|.++|++..+.
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 877765432 234567888999999999999999999988764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=3.5e-12 Score=119.81 Aligned_cols=211 Identities=10% Similarity=-0.046 Sum_probs=175.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDL-TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
+++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555544432 45778888899999999999 99999999998774 45688999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHcc--------CCHHHH
Q 012577 223 MEGDNLKEHRWTCRLLLPLYAEL---------GKADQVARIWKLCES-NP-WLDVCMAAIEAWGKL--------NKVEEA 283 (460)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~--------~~~~~a 283 (460)
..+.. |+...+..+..+|... |++++|...+++... .| +...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 98865 5578888999999999 999999999998765 44 567888999999888 999999
Q ss_pred HHHHHHHHhcccC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 284 EAVFKRMSKTWKK--LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 284 ~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
...|++..+..+. -+...|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999986431 378899999999999999999999999998874 45677888888999888988888876543
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=2.5e-09 Score=103.44 Aligned_cols=404 Identities=8% Similarity=-0.006 Sum_probs=270.2
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccc---chhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH-------
Q 012577 7 SIHSTLTKYAEEGNDLSRAEIALAMANLRTRRM---YGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL------- 76 (460)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------- 76 (460)
.+..+++++... .|.+.......+..-.+.++ ++.+..+|+........+|+...+...+....+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchh
Confidence 345566666653 67788888888888888888 9999999999887643347877888877776665553
Q ss_pred -HHHHHHHHhccc-----CCCchhHHHHHHHHHH---------cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhc
Q 012577 77 -QKAESYIQKIPE-----SFRGEVVYRTLLANCV---------AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRL 141 (460)
Q Consensus 77 -~~a~~~~~~~~~-----~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 141 (460)
+...++|+.... ...+...|...+.... .+++++.+..+|++.+......-..+|......-...
T Consensus 163 r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~ 242 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV 242 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc
Confidence 344577776332 2234567888776543 2345788999999988631111123332222111111
Q ss_pred Cc--------------hHHHHHHHHHHHc--CC----C-----------C--C------HHHHHHHHHHHhhcC------
Q 012577 142 DK--------------KKVADVLLLMEKE--NV----K-----------L--T------QFSYKILIDIKGQSN------ 176 (460)
Q Consensus 142 ~~--------------~~a~~~~~~~~~~--~~----~-----------~--~------~~~~~~li~~~~~~~------ 176 (460)
+. ..|...+.++... ++ + | + ...|...+..--..+
T Consensus 243 ~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~ 322 (679)
T 4e6h_A 243 NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDD 322 (679)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH
T ss_pred CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccch
Confidence 11 2233334333211 11 1 1 0 134555554433322
Q ss_pred -ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 012577 177 -DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE-AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARI 254 (460)
Q Consensus 177 -~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (460)
..+.+..+|++....- +-+...|-..+..+...|+.++|. ++|+..... ++.+...|...+......|+++.|..+
T Consensus 323 ~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 323 LHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 1234567788877653 557888988888888899999997 999999864 344666677788888999999999999
Q ss_pred HHHhccC------------CC------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH
Q 012577 255 WKLCESN------------PW------------LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 255 ~~~~~~~------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
|+.+... |. ...|...+....+.|..+.|..+|....+....+....|...+..-.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9876542 32 23577778887888999999999999987622223444544444334
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCHHH
Q 012577 311 DH-KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-KPMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 311 ~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 388 (460)
+. ++.+.|..+|+...+. ++-+...+...+......|+.+.|..+|+.+....+- .-....|...+..-.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44 4589999999999887 5667888888888888899999999999998765421 1134678888888899999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 012577 389 TEKIFHRMRQVGYVARFKQFQTLVQAYI 416 (460)
Q Consensus 389 a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 416 (460)
+.++.+++.+.- |+......+++-|.
T Consensus 560 ~~~v~~R~~~~~--P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 560 VRTLEKRFFEKF--PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHS--TTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHhC--CCCcHHHHHHHHhc
Confidence 999999999863 44445555555544
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=1.5e-10 Score=105.53 Aligned_cols=228 Identities=8% Similarity=-0.044 Sum_probs=170.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CC-CHHHH
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGI-EPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NL-KE-HRWTC 235 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~ 235 (460)
.....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+. +- .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567789999999999999875411 122 467888889999999999999999887652 11 11 24567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh-----cccCcCHHHH
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSK-----TWKKLSTKHY 302 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 302 (460)
..+..+|...|++++|...++.... .++ ..++..+...|...|++++|.+.+++..+ ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 7888999999999999998876543 222 23678889999999999999999998887 4333 36788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 303 TALLKVYADHKMLSKGKDLVKQMAESGC----HIGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 303 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
..+...|.+.|++++|...+++..+..- +.....+..+...|...++ +.+|..++++. .........+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8899999999999999999999887421 2223456666667777788 77777777652 112222346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 012577 376 IMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+...|.+.|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999998875
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.9e-12 Score=113.39 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC------CCC
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSE------GIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGD------NLK 229 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 229 (460)
.++..+...+...|++++|.+.++++.+. +-.| ...++..+...+...|++++|+..++++.+. +..
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555666666666666666666665532 1111 2344555666666666666666666655442 111
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 230 E-HRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 230 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
| ...++..+..+|...|++++|...++..
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1233444555555555555555555443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=2.8e-10 Score=103.78 Aligned_cols=307 Identities=9% Similarity=-0.040 Sum_probs=144.4
Q ss_pred HHHHHHHHHHH---HhcccchhHHHHHHHHHhccc-CCCChh--hhHHHHHH--HHHhhCHHHHH---------HHHHhc
Q 012577 24 RAEIALAMANL---RTRRMYGKALQLSEWLETNKK-LDFIER--DYASCLDL--IAKLRGLQKAE---------SYIQKI 86 (460)
Q Consensus 24 ~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~-~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~~~ 86 (460)
.+.+..++... ...+++++|.++++.+..... ...+.. .|-.++.. ..-.+.+..+. ..++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 33444444432 577899999999988765421 112222 22222222 11112222222 444444
Q ss_pred ccCC-C--chh---HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCC
Q 012577 87 PESF-R--GEV---VYRTLLANCVAGNNVKKAEEVFNRMKDKGF-PVTSFACNQLLILYKRLDKKKVADVLLLMEKENVK 159 (460)
Q Consensus 87 ~~~~-~--~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~ 159 (460)
.... + +.. .|......+...|++++|...|++..+... .++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------ 138 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDI------------------------------ 138 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH------------------------------
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChH------------------------------
Confidence 3210 1 111 123344556778888888888888765411 01100
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC----CC-CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCC
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE----GI-EP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLK 229 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 229 (460)
....++..+...|...|+++.|...+++..+. +- .+ ...+++.+..+|...|++++|...|++..+. +-.
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence 01123444444555555555555555444321 00 00 1234445555555555555555555544331 110
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc------CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc----Cc
Q 012577 230 -EHRWTCRLLLPLYAELGKADQVARIWKLCES------NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK----KL 297 (460)
Q Consensus 230 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p 297 (460)
....++..+..+|...|++++|...+++... .| ...++..+...+.+.|++++|...+++..+... +.
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1123444555555555555555555544332 11 223455556666666666666666665554311 11
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKM---LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
....+..+...+...++ +.+|..+++... ..+.....+..+...|...|++++|.+.|+++.+
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234444455555555 555555554411 1111234455666667777777777777766654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=2.7e-10 Score=92.09 Aligned_cols=161 Identities=16% Similarity=0.025 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH 312 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 312 (460)
+..+...+...|++++|...++.+.. . .+...+..+...+...|++++|...++.+.+... .+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 33444445555555555555554433 1 2344555556666666666666666666655432 2455666666667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKI 392 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 392 (460)
|++++|...++.+.+.. +.+...+..+...+...|++++|.++++++.+..+ .+...+..+...+...|++++|.+.
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766652 44566666677777777777777777777665542 3345666677777777777777777
Q ss_pred HHHHHHc
Q 012577 393 FHRMRQV 399 (460)
Q Consensus 393 ~~~m~~~ 399 (460)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.3e-10 Score=93.97 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=94.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 4444455555555555555555544332 2344445555555555555555555555544432
Q ss_pred cCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 245 LGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
..+...+..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...++.
T Consensus 73 ----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 73 ----------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 12333445555556666666666666666655432 2556666667777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 76653 445667777777777777777777777776554
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=1.6e-09 Score=98.49 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=100.8
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----CHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSE----GIE--P-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE----HRW 233 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 233 (460)
+..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 445566667777777777777665432 211 2 23345556666677777777777777665432111 123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc---CC-CHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhcccCc---CHHH
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES---NP-WLDVCM-----AAIEAWGKLNKVEEAEAVFKRMSKTWKKL---STKH 301 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~ 301 (460)
++..+...+...|++++|...++.... .+ ....+. ..+..+...|++++|...++........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455555666666666666666654332 11 111111 12233455666666666666555432211 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAES----GCHIGP-LAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
+..+...+...|++++|...++..... |.+++. ..+..+..++...|+.++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555566666666666666555432 111111 2344444555555666666666555543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.5e-10 Score=113.20 Aligned_cols=164 Identities=13% Similarity=0.020 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
..|+.|...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+...
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-------------- 74 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-------------- 74 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 345555555555555555555555554432 22344555555555555555555555555444321
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.+...|..+...|...|++++|++.|++..+.... +...|+.+...|...|++++|.+.|
T Consensus 75 -------------------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 75 -------------------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12334555555555555666666666555554332 4555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
++..+.. +-+...+..+...+...|++++|.+.++++.+
T Consensus 135 ~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 135 RTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 6666542 33455666666666666666666666665543
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1.1e-10 Score=114.21 Aligned_cols=163 Identities=7% Similarity=-0.033 Sum_probs=133.1
Q ss_pred ChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 127 TSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK 205 (460)
Q Consensus 127 ~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 205 (460)
+..+++.+..++.+.|+ ++|...|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56789999999999999 99999999998874 4567899999999999999999999999998875 456889999999
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a 283 (460)
++...|++++|++.|++..+.... +...|..+..+|...|++++|...|++... .| +...+..+...+...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999876533 566777777788888888887777776554 44 445667777777777777777
Q ss_pred HHHHHHHHh
Q 012577 284 EAVFKRMSK 292 (460)
Q Consensus 284 ~~~~~~m~~ 292 (460)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=3e-09 Score=96.71 Aligned_cols=290 Identities=9% Similarity=0.057 Sum_probs=183.8
Q ss_pred HHHhcCc-hHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHH
Q 012577 137 LYKRLDK-KKVADVLLLMEKENVKLTQF----SYKILIDIKGQSNDLTGMDQVVEAMKSEGI-EPDS----STQAILAKH 206 (460)
Q Consensus 137 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~----~~~~~l~~~ 206 (460)
.+...|+ ++|...+++.....-..+.. +++.+...+...|++++|.+.+++.....- .++. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4555666 88888888876653122222 456667778888899999888888764310 1222 335667777
Q ss_pred HHhCCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC------CHHHHHHHHH
Q 012577 207 YVSGGRKEKAEAMLKEMEGD----NLK--E-HRWTCRLLLPLYAELGKADQVARIWKLCES-NP------WLDVCMAAIE 272 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~------~~~~~~~li~ 272 (460)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...++.... .+ ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 88889999988888877642 221 2 234556677788888898888888876543 11 1235677778
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLST-KHYT-----ALLKVYADHKMLSKGKDLVKQMAESGCHI---GPLAWDALVKL 343 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 343 (460)
.+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 888888888888888887654222211 1222 23344678888888888888776543111 12345667778
Q ss_pred HHcCCChhhHHHHHHHHHHhC---CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 344 HVEGGEVEKADSILLKAQQQN---KFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
+...|++++|...++++.... +..++. ..+..+..++...|+.++|...+++..... .+ ...+..+...|
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~~-----~g~~~~~~~~g 336 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-NR-----TGFISHFVIEG 336 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH-----HCCCHHHHTTH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cc-----ccHHHHHHHcc
Confidence 888888888888888775432 111222 255566777888888888888888887642 11 11234455555
Q ss_pred CchhhhHHHHHhC
Q 012577 420 TPAYGIRDRMRAD 432 (460)
Q Consensus 420 ~~~~~~~~~m~~~ 432 (460)
.....+++.....
T Consensus 337 ~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 337 EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 5455555555444
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=4.1e-10 Score=94.73 Aligned_cols=98 Identities=7% Similarity=-0.161 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
|+..+......+...|++++|.+.|++..+...+++...+..+..++...|++++|+..|++..+.... +..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445556666666666666666666666665542255555555666666666666666666666654322 3344555555
Q ss_pred HHHhcCChhHHHHHHHHhc
Q 012577 241 LYAELGKADQVARIWKLCE 259 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~ 259 (460)
+|...|++++|...++...
T Consensus 85 ~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 5555555555555555443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=8.3e-10 Score=92.82 Aligned_cols=206 Identities=11% Similarity=0.001 Sum_probs=154.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAI 271 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li 271 (460)
+.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...++.... .| +...+..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3567888899999999999999999999999876646777887899999999999999999988765 55 455788899
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLST-------KHYTALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALVK 342 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 342 (460)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|...++...+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999999886443 44 457778888889999999999999998753 22 3567777777
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
.|... +..+++++.... ..+...|.... ....+.+++|...+++..+.. |.+..+...+
T Consensus 162 ~~~~~-----~~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 77543 444555554432 22333444333 334567899999999999875 4444444444
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.1e-10 Score=101.58 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=135.5
Q ss_pred hcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 012577 174 QSNDLTGMDQVVEAMKSE-------GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD------NL-KEHRWTCRLLL 239 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 239 (460)
..|++++|+..|++..+. ..+....++..+...|...|++++|+..++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666665554431 11223456666777777777777777777766543 11 12234566677
Q ss_pred HHHHhcCChhHHHHHHHHhccC---------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc------ccCc-CHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESN---------P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT------WKKL-STKHY 302 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~ 302 (460)
.+|...|++++|...+++.... | ....+..+...|...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777776654321 2 2335677788888888888888888877764 1122 34677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHH--HhCC-C-CcCH
Q 012577 303 TALLKVYADHKMLSKGKDLVKQMAES-------GCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQ--QQNK-F-KPMF 370 (460)
Q Consensus 303 ~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~-~-~~~~ 370 (460)
..+...|...|++++|...++++.+. ...+ ....+..+...+...+....+..+..... +..+ . ....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88888899999999999998888753 1112 22334444444444333333332211110 1111 1 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++..+...|.+.|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57788899999999999999999988753
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=2.3e-08 Score=85.97 Aligned_cols=252 Identities=8% Similarity=-0.022 Sum_probs=163.6
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
++-..-.|++..++.-...+.. ......-.-+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 4445557888777763332221 22233334455777777776631 12234433444333333 222
Q ss_pred hHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 249 DQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK-KLSTKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 249 ~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
+...+++... .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666776554 24555566777888889999999999988876654 225677788889999999999999999999
Q ss_pred HHcCCCC-----CHHHHHHHHHHHH----cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 326 AESGCHI-----GPLAWDALVKLHV----EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 326 ~~~~~~~-----~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
.+. .| +..+...+..++. ..+++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 775 45 3555555655522 2348999999999986554 44333344555888999999999999876
Q ss_pred HHcC---------CCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCHHHHHHH
Q 012577 397 RQVG---------YVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 397 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
.+.. -+.|+.++..+|......|+.+..++.++++. .|+.....-+
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~i~d~ 292 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAFIKHH 292 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChHHHHH
Confidence 6531 14467777677767777788888888888874 4665544433
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=4.2e-10 Score=97.80 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=151.8
Q ss_pred HHhCCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC---------C-CHHHHHH
Q 012577 207 YVSGGRKEKAEAMLKEMEG-------DNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---------P-WLDVCMA 269 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~~ 269 (460)
....|++++|+..+++..+ .+.+....++..+...|...|++++|...++..... | ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3456777777777776654 222234567888999999999999999999875431 2 2346888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcc-------cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTW-------KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES------GCHI-GPL 335 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~ 335 (460)
+...|...|++++|...+++..+.. .+....++..+...|...|++++|...++++.+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999887641 1224567888999999999999999999998775 1122 356
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhC------CCCcC-HHHHHHHHHHHHhcCCHHHHHH------HHHHHHHcCCC
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQN------KFKPM-FSSYMLIMDQYAKRGDIHSTEK------IFHRMRQVGYV 402 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g~~~~a~~------~~~~m~~~~~~ 402 (460)
++..+...|...|++++|.++++++.+.. ...+. ...|..+...+...+....+.. .++.... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 78889999999999999999999987641 11122 2234444444444333333222 2221111 113
Q ss_pred ccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 403 ARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
....++..+...|...|+ .+..+++...+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678899999999999 56666655443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=1e-09 Score=96.06 Aligned_cols=157 Identities=9% Similarity=-0.037 Sum_probs=73.6
Q ss_pred HHHhCCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGD----NLKEH-RWTCRLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIE 272 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~ 272 (460)
.|...|++++|...|++..+. |-.++ ..+|+.+..+|...|++++|...++.... .++ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544331 11111 23444444445555555555444443221 111 123445555
Q ss_pred HHHcc-CCHHHHHHHHHHHHhcccCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 012577 273 AWGKL-NKVEEAEAVFKRMSKTWKKL-S----TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP------LAWDAL 340 (460)
Q Consensus 273 ~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l 340 (460)
.|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...|+...+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 66666666665555421110 0 234555556666666666666666665553211111 134445
Q ss_pred HHHHHcCCChhhHHHHHHHHHH
Q 012577 341 VKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~ 362 (460)
..++...|++++|...|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666655543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=3.7e-08 Score=84.64 Aligned_cols=179 Identities=10% Similarity=0.068 Sum_probs=96.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555443 344444455555666666666666666665544431 133444555566666666666666666554
Q ss_pred c-CC-----CHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 012577 260 S-NP-----WLDVCMAAIEAWG----KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES- 328 (460)
Q Consensus 260 ~-~~-----~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 328 (460)
. .| +..+...++.++. ..+++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 33 1233333333321 2236777777777765542 34333334444677777777777777755442
Q ss_pred ----C----CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 329 ----G----CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 329 ----~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
. -+-|+.++..+|......|+ +|.+++.++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0 03355666455555555565 6677777776543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=4.3e-08 Score=85.65 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG--G-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (460)
.+|.+++.+..+.- +++...| .+.+. + ++++|...|++. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 35667776666542 2222222 22233 2 488888888776 34677899999999998
Q ss_pred HHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-C----HHHHHHHHHHHHhc-CCHHHHHHH
Q 012577 256 KLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL-S----TKHYTALLKVYADH-KMLSKGKDL 321 (460)
Q Consensus 256 ~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~-g~~~~a~~~ 321 (460)
.+... ..+ ..+|+.+...|.+.|++++|+..+++..+..... + ..+++.+...|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 86543 122 3478899999999999999999999887642111 1 35788899999996 999999999
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-----HHHHHHHHHHHhcCCHHHHHH
Q 012577 322 VKQMAESGCH-IG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-----SSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 322 ~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~ 391 (460)
+++..+..-. .+ ..++..+...+.+.|++++|...|+++.+..+-.+.. ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998764210 01 3568889999999999999999999998765333332 156778888999999999999
Q ss_pred HHHHHHHcCCCccH------HHHHHHHHHHH
Q 012577 392 IFHRMRQVGYVARF------KQFQTLVQAYI 416 (460)
Q Consensus 392 ~~~~m~~~~~~~~~------~~~~~l~~~~~ 416 (460)
.|++..+. .|+. ..+..++.+|.
T Consensus 221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 221 TLQEGQSE--DPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHGGGCC-----------HHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCCCCcHHHHHHHHHHHHHH
Confidence 99998864 2321 23455666664
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=7.9e-09 Score=78.38 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=100.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4566677777788888888888887765433 56777778888888888888888888887764 456677778888888
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
..|++++|.++++++.+..+ .+...+..+...+.+.|++++|...++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888888888876542 345677778888888888888888888887653
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=4.1e-07 Score=79.00 Aligned_cols=229 Identities=10% Similarity=0.008 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CChh
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG--RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY----AEL---GKAD 249 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 249 (460)
++|+++++.+...+ +-+..+|+.--.++...+ +++++++.++.+....++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666655543 334455555555555555 666666666666554433 223343333333 333 5566
Q ss_pred HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHH--HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC------HHHHH
Q 012577 250 QVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVE--EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM------LSKGK 319 (460)
Q Consensus 250 ~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~a~ 319 (460)
+++.+++.+.. +| +-.+|+.-.-.+.+.|.++ ++++.++.+.+..+. |...|+.-...+...+. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 66666665544 33 4445555555555566666 777777777776655 67777766666666665 77888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK-ADSILLKAQQQNK-FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+.++.++... +-|...|+.+-..+.+.|+... +.++..++.+... -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888887764 5577888888777777777444 4456555543221 12355677788888888888888888888887
Q ss_pred H-cCCCccHHHHHHHH
Q 012577 398 Q-VGYVARFKQFQTLV 412 (460)
Q Consensus 398 ~-~~~~~~~~~~~~l~ 412 (460)
+ .+ +.....|+...
T Consensus 286 ~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 286 SKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HTTC-GGGHHHHHHHH
T ss_pred hccC-hHHHHHHHHHH
Confidence 6 34 44555555443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=3.4e-09 Score=87.55 Aligned_cols=172 Identities=12% Similarity=-0.045 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHH----------------HHHHHHHhhCHHHHHHHHHhcc
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS----------------CLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
.+.+......+...|++++|+..|+...... |.+...+.. +..++.+.|++++|...|++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555666778899999999998887764 334445555 6677777777777777777765
Q ss_pred cCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCHH
Q 012577 88 ESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK---KKVADVLLLMEKENVKLTQF 163 (460)
Q Consensus 88 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~~~~~~~ 163 (460)
...| +...|..+..++...|++++|...|++.++.. |.+..++..+..+|...+. ..+...+..... ..|...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 5534 45667777777777777777777777777653 2345566666555544443 223333333321 112222
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAI 202 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 202 (460)
.+..+..++...|++++|...|++..+. .|+......
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 2333344455566666666666666654 455444333
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=3.8e-08 Score=81.47 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHH
Q 012577 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG----RKEKAEAMLK 221 (460)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 221 (460)
|...|++..+.| +...+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34444445555555555555555555555433 34444444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhccCCC----HHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAE----LGKADQVARIWKLCESNPW----LDVCMAAIEAWGK----LNKVEEAEAVFKR 289 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~----~~~~~~a~~~~~~ 289 (460)
+..+.| +...+..|...|.. .+++++|..+|+......+ ...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 22334444444433 4444444444444333222 3334444444433 3344444444444
Q ss_pred HHh
Q 012577 290 MSK 292 (460)
Q Consensus 290 m~~ 292 (460)
..+
T Consensus 155 A~~ 157 (212)
T 3rjv_A 155 SSS 157 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=1.4e-09 Score=84.60 Aligned_cols=144 Identities=13% Similarity=0.009 Sum_probs=90.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
..+...|++++|+..+.......+. +...+..+...|.+.|++++|.+.|+...+.. +-+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444556667777777666554322 34455566777777777777777777777653 446677777777777777777
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 352 KADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKI-FHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+|...|+++.+..+- +...|..+...|.+.|++++|.+. +++..+.. |-++.+|....+.+...|+
T Consensus 83 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT--QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 777777777665432 345666677777777777665544 46666654 4456666666666655554
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.7e-08 Score=76.49 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=68.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH
Q 012577 238 LLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML 315 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 315 (460)
+...+...|++++|..+++.+.. . .+...+..+...+...|++++|...++++.+.+. .+...+..+...+...|++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhcCH
Confidence 33344444444444444443322 1 1333444455555555566666666665555432 2445566666666666667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
++|...++.+.+.. +.+...+..+...+.+.|++++|...++++.+.
T Consensus 86 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 86 DEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77766666666543 334566666666677777777777777666543
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=2.4e-08 Score=85.70 Aligned_cols=188 Identities=11% Similarity=0.008 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC---C-HHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH--RWTCRLLLPLYAELGKADQVARIWKLCES-NP---W-LDV 266 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~-~~~ 266 (460)
+.+...+..+...+.+.|++++|+..|+++.+...... ...+..+..+|...|++++|...|+.... .| . ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566777777788888888888888888877543211 45666777778888888888888877654 33 2 234
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012577 267 CMAAIEAWGK--------LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338 (460)
Q Consensus 267 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (460)
+..+..++.. .|++++|...|+++.+..+. +......+.. +..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5666666766 77777777777777765332 2222211110 0010000 011235
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 012577 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYAKR----------GDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 400 (460)
.+...|.+.|++++|+..|+++.+..+-.+ ....+..+..+|... |++++|...|+++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 566777788888888888888877654322 234566666677655 77788888888887753
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=3.9e-08 Score=81.37 Aligned_cols=176 Identities=14% Similarity=0.029 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG----KADQVARIW 255 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 255 (460)
+|.+.|++..+.| +..++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555432 44555555555555566666666666555543 23344444444444 3 444444444
Q ss_pred HHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 012577 256 KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD----HKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 331 (460)
+......+... +..|...|.. .+++++|...|+...+.|..
T Consensus 77 ~~A~~~g~~~a-----------------------------------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 77 EKAVEAGSKSG-----------------------------------EIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp HHHHHTTCHHH-----------------------------------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred HHHHHCCCHHH-----------------------------------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 44433334444 4444444443 44555555555555444310
Q ss_pred -CCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 012577 332 -IGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR-G-----DIHSTEKIFHRMRQVG 400 (460)
Q Consensus 332 -~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 400 (460)
.++..+..|...|.. .+++++|..+|++..+.. .+...+..|...|... | +.++|..+|++..+.|
T Consensus 122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 013444445555544 455555666555554431 1222344444444432 2 5666666666666555
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=3.2e-08 Score=84.99 Aligned_cols=188 Identities=9% Similarity=-0.053 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-C-CHH
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-E-HRW 233 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 233 (460)
+.+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677778889999999999999999999864 223 678889999999999999999999999886432 2 245
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHhcc-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHH
Q 012577 234 TCRLLLPLYAE--------LGKADQVARIWKLCES-NPWL-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYT 303 (460)
Q Consensus 234 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 303 (460)
.+..+..++.. .|++++|...|+.+.. .|+. .....+ ..+...... ....+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 67778888888 9999999999998765 4432 222111 111111111 112356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcC----------CChhhHHHHHHHHHHhCC
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALVKLHVEG----------GEVEKADSILLKAQQQNK 365 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~ 365 (460)
.+...|...|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+..+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 67788888899999999998888753111 245677777777765 888999999998887664
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=3.2e-07 Score=86.01 Aligned_cols=360 Identities=8% Similarity=-0.012 Sum_probs=221.8
Q ss_pred cc-cchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCC-HHHHHH
Q 012577 37 RR-MYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNN-VKKAEE 114 (460)
Q Consensus 37 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~ 114 (460)
.| +++.|..+|+.+...- | . |+++.+..+|+......|++..|...+....+.+. .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P-~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--M-S--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--H-T--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--C-C--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3777777777766543 2 2 89999999999988888999999998887766653 456778
Q ss_pred HHHHHHhC-CC-CCChhhhHHHHHHHHh----cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-------------
Q 012577 115 VFNRMKDK-GF-PVTSFACNQLLILYKR----LDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ------------- 174 (460)
Q Consensus 115 ~~~~m~~~-g~-~~~~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~------------- 174 (460)
+|+..+.. |. +++...|...+..+.. .+. +.+..+|+.........-...|......-..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88887753 43 3356777777765543 233 6788999999874221112233333221111
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--C-----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG--R-----KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
.+.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+...|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 1223344555554442100123446666555433221 1 345678899888753 3457788888888899999
Q ss_pred hhHHHHHHHHhccCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcc------------cCcCHHHHHHHHHHHHhcCC
Q 012577 248 ADQVARIWKLCESNPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTW------------KKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------~~p~~~~~~~li~~~~~~g~ 314 (460)
++.|..++++....|... .+. .|......++. ++.+.+.- .......|...+..+.+.+.
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999998654335433 222 22222111221 22222110 01123557777777778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG-GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
.+.|..+|+.+ ... ..+...|......-... ++.+.|..+|+...+..+-.| ..|...++...+.|+.+.|..+|
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 321 23445554333332223 369999999999988765434 45677788888899999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHH
Q 012577 394 HRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 394 ~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
+++. .....|...+.--...|+ .+..+++++.
T Consensus 378 er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 378 KRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9872 256788888887778888 4555564444
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.7e-08 Score=83.35 Aligned_cols=132 Identities=15% Similarity=-0.018 Sum_probs=68.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC-
Q 012577 238 LLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM- 314 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~- 314 (460)
+..+|...|++++|...|+.... .| +...+..+...+...|++++|...|++..+..+. +..++..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence 55555566666666666655443 33 4445666666666666666666666666665433 45566666665554433
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 315 -LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 315 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
...+...++.... ..|....+.....++...|++++|...|+++.+. .|+......
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l---~P~~~~~~~ 195 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR---FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT---SCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCHHHHHH
Confidence 2233444443321 1122223333444455566777777777766543 355444333
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=2.8e-07 Score=79.98 Aligned_cols=215 Identities=8% Similarity=-0.030 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhC---CChH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN--DLTGMDQVVEAMKSEGIEPDSSTQAILAKHY----VSG---GRKE 214 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~---~~~~ 214 (460)
++|...+..+.... +-+...|+.--..+...| ++++++++++.+.... +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34444444444432 223334555555555555 6666666666666543 33444554433333 333 5566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC------HHHHH
Q 012577 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD--QVARIWKLCES-NP-WLDVCMAAIEAWGKLNK------VEEAE 284 (460)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~------~~~a~ 284 (460)
+++.+++.+.+...+ +..+|+.-.-++.+.|.++ ++++.++.+.. +| +-..|+.-...+.+.+. +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666665433 5556655555556666665 66666665544 33 44455555555555554 77888
Q ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 285 AVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK-GKDLVKQMAESG--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 285 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+.++.+....+. |...|+.+...+.+.|+... +..+...+.+.+ -+.++..+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888877665 77888888888877777443 555666654432 13467788888888888888899999988886
Q ss_pred H
Q 012577 362 Q 362 (460)
Q Consensus 362 ~ 362 (460)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=1.3e-06 Score=81.90 Aligned_cols=354 Identities=9% Similarity=-0.000 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC-HHHHHHHHHhccc----CCCchhHHHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG-LQKAESYIQKIPE----SFRGEVVYRTL 99 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~----~~~~~~~~~~l 99 (460)
..+...+..+-. ++++.+..+|+.....- |+...|...+....+.+. .+....+|+.... ...+...|...
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 344444444433 78999999999988753 588888888888777763 3556667776443 23466788888
Q ss_pred HHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--------------hHHHHHHHHHHHcCCCCC
Q 012577 100 LANCVA----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--------------KKVADVLLLMEKENVKLT 161 (460)
Q Consensus 100 l~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--------------~~a~~~~~~~~~~~~~~~ 161 (460)
+..+.. +++.+.+.++|++.+......-...|......-...+. ..|..+++.+...--..+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 876542 46788999999999874211111122222111111111 122333433332100113
Q ss_pred HHHHHHHHHHHhhcC--C-----hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 012577 162 QFSYKILIDIKGQSN--D-----LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWT 234 (460)
Q Consensus 162 ~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (460)
...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..+|++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 345655555432221 1 345678899988754 566888988898899999999999999999987 223222
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHhccC--------C---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHH
Q 012577 235 CRLLLPLYAELGKADQVA-RIWKLCESN--------P---WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHY 302 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 302 (460)
+. .|....+.++.. .+.+..... + ....|...+....+.+..+.|..+|+.. .. ...+...|
T Consensus 249 ~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 249 SL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp HH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred HH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 22 233222222221 222211100 1 1234666677776778899999999998 32 22344455
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 303 TALLKVYAD-HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 303 ~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
......-.. .++.+.|..+|+...+. ++-++..+...+....+.|+.+.|..+|+.+. .....|...+..-.
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 433332222 33699999999999886 34456667777887788999999999999862 24678888888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 012577 382 KRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~ 398 (460)
..|+.+.+.++++++..
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 89999999999998874
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=1.1e-08 Score=81.90 Aligned_cols=161 Identities=8% Similarity=-0.050 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHH-H
Q 012577 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLIL-Y 138 (460)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~ 138 (460)
..+......+...|++++|...|++.....| +...+..+...+.+.|++++|...|++..+.. |+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455667778888999999999988776534 56778888888889999999999998876653 233332222111 1
Q ss_pred Hh-cCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHH
Q 012577 139 KR-LDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP-DSSTQAILAKHYVSGGRKEKA 216 (460)
Q Consensus 139 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a 216 (460)
.. .+...+...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11 11233555666655542 3345666666667777777777777777766553211 244666666666667777777
Q ss_pred HHHHHHHH
Q 012577 217 EAMLKEME 224 (460)
Q Consensus 217 ~~~~~~~~ 224 (460)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=1.6e-08 Score=80.97 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcC
Q 012577 237 LLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHK 313 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g 313 (460)
.+...+...|++++|...++.... . .+...+..+...+...|++++|...++......+ +...+..+... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 444555556666666666655443 2 2444566666666666666666666666554332 33222221111 11222
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
...+|...++...+.. +.+...+..+...+...|++++|...|+++.+..+-..+...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2234566666666642 335666777777777777777777777776654432223446666777777777777777777
Q ss_pred HHHH
Q 012577 394 HRMR 397 (460)
Q Consensus 394 ~~m~ 397 (460)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=1.6e-08 Score=88.03 Aligned_cols=164 Identities=10% Similarity=-0.065 Sum_probs=98.9
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
.+...+..+...+...|++++|...|++.....| +...+..+...+.+.|++++|...+++..... |+.........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3445555666666777777777777777655434 45566677777777777777777777765542 33322221111
Q ss_pred -HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCh
Q 012577 137 -LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE-PDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 137 -~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~~~~ 213 (460)
.+...+. ..+...+++..... +.+...+..+...+...|++++|...|+++.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 1222222 44555555555543 445666777777777777777777777777665311 1155677777777777777
Q ss_pred HHHHHHHHHHH
Q 012577 214 EKAEAMLKEME 224 (460)
Q Consensus 214 ~~a~~~~~~~~ 224 (460)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77776666543
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1.6e-08 Score=99.27 Aligned_cols=172 Identities=9% Similarity=-0.043 Sum_probs=118.9
Q ss_pred hhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 173 GQSNDLTGMDQVVEAMK--------SEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.+.. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888877 332 445677777778888888888888888887765432 55677777777788
Q ss_pred cCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 245 LGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.|++++|...|++... .| +...+..+..++.+.|++++ .+.|++..+.++. +...|..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887776654 44 45567777777777788877 7777777765443 5667777777777888888888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 012577 323 KQMAESGCHIGPLAWDALVKLHVEGGE 349 (460)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (460)
+++.+.. +-+...+..+..++...++
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCC
Confidence 7776642 2234566666666655444
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=2.4e-08 Score=86.94 Aligned_cols=163 Identities=8% Similarity=-0.070 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHH-HHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCM-AAIE 272 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~-~li~ 272 (460)
.+...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...++.+.. .|+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 34445555555566666666666666666554322 334455555555555555555555554433 23222111 1111
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChh
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH-IGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 351 (460)
.+...++.+.|...+++.....+. +...+..+...+...|++++|...+..+.+..-. .+...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 233333444444444444443221 3344444444444444444444444444443200 01333444444444444444
Q ss_pred hHHHHHHH
Q 012577 352 KADSILLK 359 (460)
Q Consensus 352 ~a~~~~~~ 359 (460)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 44444433
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=8.6e-08 Score=84.43 Aligned_cols=171 Identities=6% Similarity=-0.023 Sum_probs=103.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHhcCChh
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL----KE-HRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~ 249 (460)
.++++.|...|.+. ...|...|++++|...|.+..+... .+ -..+|..+..+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 46666666666554 3456677888888877776654211 00 1245666777777777777
Q ss_pred HHHHHHHHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-----CHHHHHHHHHHHHhcCCHH
Q 012577 250 QVARIWKLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL-----STKHYTALLKVYADHKMLS 316 (460)
Q Consensus 250 ~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~ 316 (460)
+|...+++... ..+ ..++..+...|.. |++++|+..|++..+..... ...++..+...|...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 77777765432 111 2355666677766 77777777777666432110 1345666777777777777
Q ss_pred HHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 317 KGKDLVKQMAES----GCHIG-PLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 317 ~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+|...|++..+. +..+. ...+..+...+...|++++|...|++..
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777776652 11111 1245555566666677777777777765
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=7.5e-08 Score=80.55 Aligned_cols=186 Identities=11% Similarity=-0.020 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCH----HHHH
Q 012577 196 DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EH-RWTCRLLLPLYAELGKADQVARIWKLCES-NPWL----DVCM 268 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~~ 268 (460)
+...+..+...+.+.|++++|+..|+++.+..+. |. ...+..+..+|.+.|++++|...|+.+.. .|+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888999999999999998875432 11 34677788889999999999999987665 4432 1344
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 269 AAIEAWGK------------------LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 269 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
.+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 44444443 34556666666666554322 11111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
......+...|.+.|++++|...|+++.+..+-.|. ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011134566778889999999999998887643332 2467778889999999999999999888764
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=9.1e-09 Score=79.97 Aligned_cols=143 Identities=8% Similarity=-0.058 Sum_probs=101.8
Q ss_pred HHHHHhcCChhHHHHHHHHhccC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 239 LPLYAELGKADQVARIWKLCESN-P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
...+...|++++|...++..... | ....+..+...|.+.|++++|++.|++..+..+. +..+|..+...|...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34455567777777777765542 2 2334566778888888888888888888876554 6788888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI-LLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+|...|+...+.. +-+...+..+...|.+.|++++|.+. ++++.+..+- +...|......+.+.|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~--~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG--SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCc
Confidence 9999988888864 44678888888888888888776655 4777765532 34566666666666654
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=1.1e-07 Score=79.59 Aligned_cols=185 Identities=11% Similarity=-0.051 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE-P-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR--WTCR 236 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 236 (460)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666788899999999999999999875311 1 1467888899999999999999999999876543221 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHhcc-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 012577 237 LLLPLYAE------------------LGKADQVARIWKLCES-NPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 237 ~l~~~~~~------------------~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 296 (460)
.+..++.. .|++++|...|+.+.. .|+.. .+.+.. ....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~--------------~l~~~~~~--- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK--------------RLVFLKDR--- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH--------------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH--------------HHHHHHHH---
Confidence 45555543 5789999999998766 45432 222111 11111100
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP---LAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.......+...|.+.|++++|...|+.+.+.. +.+. ..+..+..+|.+.|+.++|.+.++.+....
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01122345677888899999999999988763 2222 567788889999999999999998876543
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=1.4e-08 Score=99.71 Aligned_cols=171 Identities=10% Similarity=-0.064 Sum_probs=141.4
Q ss_pred HhCCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHcc
Q 012577 208 VSGGRKEKAEAMLKEME--------GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKL 277 (460)
Q Consensus 208 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~ 277 (460)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.... ..+...|..+...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 432 23557788899999999999999999998766 34677899999999999
Q ss_pred CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (460)
|++++|.+.|++..+..+. +...|..+..+|.+.|++++ ...|++..+.+ +.+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987554 67889999999999999999 99999999874 557889999999999999999999999
Q ss_pred HHHHHhCCCCcC-HHHHHHHHHHHHhcCC
Q 012577 358 LKAQQQNKFKPM-FSSYMLIMDQYAKRGD 385 (460)
Q Consensus 358 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 385 (460)
+++.+.. |+ ...+..+..++...|+
T Consensus 558 ~~al~l~---P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS---RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS---TTHHHHHHHHHHHTC----
T ss_pred HhhcccC---cccHHHHHHHHHHHHccCC
Confidence 9886543 44 4566667777766554
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=3.9e-08 Score=94.74 Aligned_cols=153 Identities=8% Similarity=-0.043 Sum_probs=96.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHH
Q 012577 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVF 287 (460)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~ 287 (460)
.|++++|+..|++..+.... +...+..+...+...|++++|...+++... .| +...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46778888888877665432 456777777778888888888887776654 33 4556777777777778888888888
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhhHHHHHHHHHHhC
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG---GEVEKADSILLKAQQQN 364 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~ 364 (460)
++..+.... +...+..+...|...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.++++.+..
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 777765433 56677777777777888888888877777753 44566777777777777 77777877777777655
Q ss_pred C
Q 012577 365 K 365 (460)
Q Consensus 365 ~ 365 (460)
+
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=3.8e-08 Score=94.87 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (460)
|++++|.+.|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555555544432 223445555555555555555555555555544321 3444555555555555555555555
Q ss_pred HHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 012577 256 KLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH---KMLSKGKDLVKQMAES 328 (460)
Q Consensus 256 ~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 328 (460)
++... .| +...+..+...|.+.|++++|.+.|++..+.... +...+..+...+... |++++|.+.+++..+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 54433 22 3345555555555555555555555555554322 344555555555555 5555555555555554
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=1.2e-06 Score=76.45 Aligned_cols=160 Identities=13% Similarity=-0.017 Sum_probs=108.2
Q ss_pred HHHHHhcCChhHHHHHHHHhccCC----C----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cC----HHHHHHH
Q 012577 239 LPLYAELGKADQVARIWKLCESNP----W----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LS----TKHYTAL 305 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l 305 (460)
+..+...|++++|..+++.....+ + ...+..+...+...+++++|+..|+...+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 444555566666666665544311 1 112334666677778888888888888763221 22 2368888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC---CCCcC-HHHHHH
Q 012577 306 LKVYADHKMLSKGKDLVKQMAES-----GCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQN---KFKPM-FSSYML 375 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~ 375 (460)
...|...|++++|...++.+.+. +..+ ...++..+...|.+.|++++|...+++..+.. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88899999999999988888741 1111 23477888889999999999999998876532 11121 467888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHH
Q 012577 376 IMDQYAKRGD-IHSTEKIFHRMRQ 398 (460)
Q Consensus 376 l~~~~~~~g~-~~~a~~~~~~m~~ 398 (460)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8889999994 6999999888764
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=4.2e-07 Score=75.15 Aligned_cols=128 Identities=12% Similarity=-0.007 Sum_probs=85.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
..+...+...|++++|...|++.. .|+...+..+...|...|++++|...++...+.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344556666677777777776553 3466677777777777777777777777776653 44566777777777777
Q ss_pred CChhhHHHHHHHHHHhCCCCc--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 348 GEVEKADSILLKAQQQNKFKP--------------MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|++++|.+.|+++.+..+-.+ ....+..+..++.+.|++++|.+.|++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777765432111 12566677777778888888888888777654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=4e-07 Score=80.11 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=155.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS-GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA 252 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (460)
..|++++|.+++++..+.. +.. +.+ .+++++|...|... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888999998876542 111 122 57888888888765 45678899999999
Q ss_pred HHHHHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhccc---Cc--CHHHHHHHHHHHHhcCCHHHHH
Q 012577 253 RIWKLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK---KL--STKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 253 ~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~a~ 319 (460)
..|.+... ..+ ..+|+.+...|.+.|++++|+..|++..+... .| ...++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 98876543 222 33688889999999999999999998765321 11 23577888889988 9999999
Q ss_pred HHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHH
Q 012577 320 DLVKQMAESGCHI-----GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 320 ~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 390 (460)
..+++..+..-.. ...++..+...|.+.|++++|++.|+++.+..+-.++ ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999987631111 1467888999999999999999999998764321111 235666777888889999999
Q ss_pred HHHHHHHHcCCCcc------HHHHHHHHHHHHhcCC
Q 012577 391 KIFHRMRQVGYVAR------FKQFQTLVQAYINAKT 420 (460)
Q Consensus 391 ~~~~~m~~~~~~~~------~~~~~~l~~~~~~~g~ 420 (460)
..|++.. .. |+ ......++.++ ..|+
T Consensus 216 ~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 216 KCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp HHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcC
Confidence 9999988 42 32 22455566655 4455
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=1.9e-07 Score=73.69 Aligned_cols=131 Identities=8% Similarity=-0.078 Sum_probs=99.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...++...+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4566777788888888888888888776443 67788888888888999999999998888763 556788888888889
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..|++++|...++++.+..+-.+....+......+.+.|++++|.+.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999998887654333322223444447778889999888887653
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=3.3e-07 Score=80.05 Aligned_cols=95 Identities=12% Similarity=-0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCCC-H
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKS----E-GIEPD-SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLKEH-R 232 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~ 232 (460)
+++.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|+..+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 466666666777777777777666652 1 11111 235666666677777777777766665431 11111 4
Q ss_pred HHHHHHHHHHHhcCC-hhHHHHHHHHh
Q 012577 233 WTCRLLLPLYAELGK-ADQVARIWKLC 258 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~-~~~a~~~~~~~ 258 (460)
.+|..+..+|...|+ +++|...++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 566666667777773 46666666543
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=4.4e-07 Score=67.86 Aligned_cols=108 Identities=6% Similarity=-0.017 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+......|.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|+..++++++.++ .+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--hhhHHHHHHHHH
Confidence 345566667777777777777777776653 44666777777777777777777777777766542 334566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
+...|++++|++.|++..+.. |.+...+..|
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 777777777777777777754 4444444444
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=2.9e-05 Score=68.22 Aligned_cols=240 Identities=8% Similarity=-0.004 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-C-ChHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN-DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG-G-RKEKAEAML 220 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 220 (460)
++|.++++.+.... +-+..+|+.--..+...| ++++++++++.+.... +.+..+|+.-...+.+. + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 44555555555442 233334444444444444 3555555555555443 33444444444433333 3 445555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
+.+.+...+ +..+|+.-.-++.+.|.++.+ + ...+.++++.++++.+..+. |..
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~-----------~-------------~~~~~eELe~~~k~I~~dp~-N~S 202 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRI-----------S-------------EAQWGSELDWCNEMLRVDGR-NNS 202 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCC-----------C-------------HHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhcccccc-----------c-------------hhhHHHHHHHHHHHHHhCCC-CHH
Confidence 555444322 333333332222222222200 0 00012666666666666554 666
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh--------------------hhH
Q 012577 301 HYTALLKVYADHKM-------LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV--------------------EKA 353 (460)
Q Consensus 301 ~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~a 353 (460)
.|+.....+.+.++ ++++++.++.+.... +-|...|+-+-..+.+.|+. ...
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETV 281 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhH
Confidence 66666666666554 566777777766653 45666676665555555543 122
Q ss_pred HHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 354 DSILLKAQQQN----KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 354 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
.+....+.... .-.+.......++..|...|+.++|.++++.+.+.-=+....-|+-.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 22222221111 013556677788888888888888888888887542133444454443
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=1.7e-07 Score=76.76 Aligned_cols=132 Identities=9% Similarity=0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc----c-cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--C--CHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKT----W-KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES--GCH--I--GPL 335 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~--~--~~~ 335 (460)
+..+...+...|++++|...+++..+. + ......++..+...+...|++++|...+++..+. ... + ...
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 108 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 344444444444444444444444331 0 1112344555556666666666666666655432 011 1 123
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+..+...+...|++++|...+++..+...-..+ ..++..+...+...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555566666666666666666665432111111 12345566666777777777777666654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=1.6e-06 Score=75.70 Aligned_cols=28 Identities=4% Similarity=-0.236 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.+...+..+...|++++|...+++..+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~ 104 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 3444555566666666666666665554
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=8.3e-07 Score=65.90 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (460)
...+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|..+++++.+..+ .+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHH
Confidence 4456666666777777777777777766653 34566666677777777777777777777665432 34456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 7777777777777777777654 4455555555555443
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1e-06 Score=72.80 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
+..+...+...|++++|...|++... ++...|..+..++.+.|++++|...|++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 33455555666666666666666643 455566666666666666666666666655432
Q ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----------------HHHHHHHHHH
Q 012577 143 KKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----------------SSTQAILAKH 206 (460)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~l~~~ 206 (460)
+.+...|..+..++...|++++|.+.|++..+.. +.+ ...+..+..+
T Consensus 68 ----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 ----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHH
Confidence 2344556666666666677777777766666542 111 2566667777
Q ss_pred HHhCCChHHHHHHHHHHHhCCC
Q 012577 207 YVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
+...|++++|...|+...+...
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHccCHHHHHHHHHHHHHcCc
Confidence 7777777777777777766543
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=1e-06 Score=76.94 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCC----CCC-C
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPD-----SSTQAILAKHYVSGGRKEKAEAMLKEMEGDN----LKE-H 231 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 231 (460)
.+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|+..+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35666777777777777777777766521 00111 1466677777777777777777777665321 111 1
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHH
Q 012577 232 RWTCRLLLPLYAELGKADQV-ARIWKL 257 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a-~~~~~~ 257 (460)
..+|..+..+|...|++++| ...++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 45666777777777777777 555554
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=6.3e-07 Score=67.52 Aligned_cols=118 Identities=4% Similarity=-0.081 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++++.+..+ .+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHHHHH
Confidence 44556666666777777777777777766642 33566666677777777777777777777665432 2445666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
.++.+.|++++|.+.|++..+.. +.+...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777777777777777776654 334555666666655544
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=1.9e-05 Score=69.40 Aligned_cols=237 Identities=11% Similarity=0.002 Sum_probs=148.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKENVKLTQFSYKILIDIKG 173 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (460)
++.+.....+.+..++|++++++++..+. -+..+|+.--..+...+. +++...++.+.... +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44444445566677899999999998752 255667776667777773 89999999998875 667778888877777
Q ss_pred hc-C-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 174 QS-N-DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKE--------KAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 174 ~~-~-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+. + ++++++++++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++.+.++. |...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 76 7 8999999999999876 567888887766666666666 788888888876654 6667777666666
Q ss_pred hcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH--------
Q 012577 244 ELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML-------- 315 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-------- 315 (460)
+.++.... ...++++++.++++....+. |...|+.+-..+.+.|+.
T Consensus 213 ~l~~~~~~-------------------------~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 213 SRPGAETS-------------------------SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp TSTTCCCC-------------------------HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred hccccccc-------------------------hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccc
Confidence 65541000 00023334444443333222 334444333333333321
Q ss_pred ------------HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 316 ------------SKGKDLVKQMAESG-----CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 316 ------------~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
....++...+...+ -.+++..+..++..|...|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11222222222111 135667777788888888888888888887754
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=2.2e-07 Score=80.52 Aligned_cols=194 Identities=11% Similarity=-0.023 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLA 101 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~ 101 (460)
+...+..+...+...|++++|+..|+...... +.+...+..+..++.+.|++++|...+++.....| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677788888999999999999999988865 45778888999999999999999999999877655 5678889999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
++...|++++|...|++..+.+. -+...+...+....+... . ..+........+.+......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIAK--K-KRWNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHH--H-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHHH--H-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999999877531 111222222222221111 1 112223333334444444444332 26788888
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 012577 182 DQVVEAMKSEGIEPDS-STQAILAKHYVSG-GRKEKAEAMLKEMEGD 226 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 226 (460)
.+.++...+. .|+. .....+...+.+. +.+++|..+|..+.+.
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888777755 3443 3333443334444 5677788888777653
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.69 E-value=1.4e-06 Score=65.23 Aligned_cols=119 Identities=6% Similarity=-0.076 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+..+ .+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHHHHHHH
Confidence 34556666667777777777777777776653 34566677777777777777777777777766532 2345666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
..+.+.|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777777777664 4456666666666666554
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=1.2e-06 Score=65.41 Aligned_cols=97 Identities=11% Similarity=-0.070 Sum_probs=77.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+......|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|...++..++.. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4566777888888888888888888776543 67788888888888888888888888888764 456778888888888
Q ss_pred cCCChhhHHHHHHHHHHhC
Q 012577 346 EGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~ 364 (460)
..|++++|.+.|+++.+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 8888888888888887754
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=8.8e-07 Score=72.43 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=80.9
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCh
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +..+.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------- 64 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA----------------- 64 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH-----------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH-----------------
Confidence 3456666666644444321 1123455666666666666666666666655431 11100
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----ccCc--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 249 DQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT----WKKL--STKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
....+..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+
T Consensus 65 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 65 --------------EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp --------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1123444455555555555555555544432 1011 1234556666666777777777776
Q ss_pred HHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 323 KQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 323 ~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
++..+..- ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 66653210 011 22345666677777777777777776654
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=3.4e-07 Score=70.73 Aligned_cols=99 Identities=7% Similarity=-0.019 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|+++....+- +...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHH
Confidence 34455556666666777777777777666653 445666666666677777777777777766655432 334556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+|...|++++|.+.|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6677777777777777766654
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=3.6e-07 Score=70.62 Aligned_cols=105 Identities=15% Similarity=0.007 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+...+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...|+...... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445667778888889999999999988876543 77888888889999999999999999988864 456788888899
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
+|...|++++|...|+++.+..+-.|.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999988876654444
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=8.9e-07 Score=68.37 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=51.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...|+...+.. +.++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 4444555555555555555555555554332 44555555555555555555555555555542 334455555555555
Q ss_pred cCCChhhHHHHHHHHHHh
Q 012577 346 EGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~ 363 (460)
+.|++++|...|+++.+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=1.3e-07 Score=73.10 Aligned_cols=100 Identities=6% Similarity=-0.045 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|+++.+..+- +...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHH
Confidence 45578888899999999999999999999874 567899999999999999999999999999987654 346788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.+|.+.|++++|+..|++..+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=2.6e-06 Score=63.10 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34566677777778888888888887776543 256777788888888888888888888887763 4567778888888
Q ss_pred HHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012577 344 HVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (460)
+...|++++|...++++.+..+ .+...+..+...+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP--NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHh
Confidence 8888888888888888876543 233444444444433
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=6.3e-07 Score=71.66 Aligned_cols=121 Identities=9% Similarity=0.110 Sum_probs=77.9
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--hh
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL-HVEGGEV--EK 352 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 352 (460)
..|++++|...++...+..+. +...|..+...|...|++++|...++.+.+.. +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666777777766665432 55667777777777777777777777776653 3456666666666 6667776 77
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 353 ADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|...++++.+..+ .+...+..+...+...|++++|...|+++.+..
T Consensus 100 A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777766542 234566667777777777777777777777653
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=2e-06 Score=67.62 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=9.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~ 291 (460)
.+...+...|++++|...|++..
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33333334444444444444433
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.62 E-value=7.8e-05 Score=65.13 Aligned_cols=195 Identities=12% Similarity=-0.026 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC-HHHHHHHH
Q 012577 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK--ADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNK-VEEAEAVF 287 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~-~~~a~~~~ 287 (460)
+++++.+++.+....++ +..+|+.-..++...++ +++++.+++.+.. +| +...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555544332 44445444444444442 4555555554443 22 34444444444444455 35666666
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC------
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYADH--------------KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG------ 347 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 347 (460)
+.+.+..+. |...|+.....+.+. +.++++++.+....... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 666665444 555555554444433 34666777777776653 45666666554444444
Q ss_pred -----CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 348 -----GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ-----YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 348 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
+.++++++.++++.+.. ||. .|..+..+ .-..|..+++...+.++.+.+ |....-|.-+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 34677777777777644 443 34322221 223567778888888888765 44555555554443
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=2.3e-07 Score=80.38 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHH
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWG 275 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~ 275 (460)
..+..+...+...|++++|+..|++..+.... +...+..+..+|...|++++|...++.... .| +...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444444433211 334444444444444444444444444333 22 3344555555566
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 355 (460)
..|++++|...|+...+..+. +...+...+....+ ..++. -+........+.+......+... ..|+.++|.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 666666666666655543221 11111111111111 11111 11222223344444444444332 2477777777
Q ss_pred HHHHHHHhCCCCcCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 012577 356 ILLKAQQQNKFKPMF-SSYMLIMDQYAKR-GDIHSTEKIFHRMRQ 398 (460)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 398 (460)
.++.+.+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 157 ~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEG---HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTT---TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhcc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77766543 3432 2333333334444 567778888876654
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=2.8e-06 Score=63.58 Aligned_cols=118 Identities=8% Similarity=-0.097 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
..+..+...+...|++++|...|+........ +...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 35666777777888888888888887765432 66778888888888888888888888888763 44677888888888
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDI 386 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (460)
...|++++|...++++.+..+ .+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhcC
Confidence 888888888888888877643 2445666777777766654
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=2.5e-06 Score=64.12 Aligned_cols=118 Identities=8% Similarity=-0.106 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445667777777788888888888877765433 56777777888888888888888888887763 446777888888
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG 384 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (460)
.+.+.|++++|.+.|++..+..+- +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhc
Confidence 888888888888888887765432 2345555555555544
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=1.9e-06 Score=68.84 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=79.8
Q ss_pred hcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcCCH--HHH
Q 012577 244 ELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHKML--SKG 318 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~a 318 (460)
..|++++|...++.... .| +...+..+...|...|++++|...|++..+..+. +...+..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556666666655433 33 4456667777777777777777777777765443 56666677777 6677777 888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
...++.+.+.. +.+...+..+...|...|++++|...|+++.+..+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88888877763 44567777777788888888888888888776543
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=2.6e-06 Score=72.28 Aligned_cols=127 Identities=9% Similarity=-0.071 Sum_probs=62.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG--PLAWDALVKLHVE 346 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 346 (460)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34444555555555555555554432 222233444445555566666666655332211 110 1244555555666
Q ss_pred CCChhhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 347 GGEVEKADSILLKAQQQNKFKPM--FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.|++++|++.|++... .+..|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666665542 111132 123344445556666666666666666654
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=2.6e-06 Score=67.03 Aligned_cols=103 Identities=10% Similarity=-0.021 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
..+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...++...+.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556666677777777777777777665433 56667777777777777777777777777653 44566777777777
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
...|++++|.+.|+++.+..+-.++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 7777777777777777665544443
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=3.6e-06 Score=62.94 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-----HHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-----FSSYM 374 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 374 (460)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++..+-.+. ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666777777777777666653 345666666777777777777777777666553221111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 409 (460)
.+..++...|++++|++.|++..+. .||+.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6666677777777777777776664 34544433
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=3.4e-06 Score=75.12 Aligned_cols=131 Identities=11% Similarity=-0.013 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--------------TKHYTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...++...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566677777777888888888877776543311 4778888888888888888888888888864
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 012577 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST-EKIFHRMR 397 (460)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 397 (460)
+.+...+..+..+|...|++++|...|+++.+..+ .+...+..+..++.+.|+.++| ...|+.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888888888888888888877653 3456777788888888888887 44666664
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=5.4e-06 Score=60.66 Aligned_cols=109 Identities=6% Similarity=-0.071 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (460)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++++.+..+ .+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHH
Confidence 3445556666666666777766666666542 33556666666666666777777777766665432 23455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
++...|++++|.+.+++..+.+ +.+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 6777777777777777766653 3344444433
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=2.9e-06 Score=64.89 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=50.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...|+...+.. +.++..+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 334444555555555555555555544332 44455555555555555555555555555542 3344555555555555
Q ss_pred CCChhhHHHHHHHHHHh
Q 012577 347 GGEVEKADSILLKAQQQ 363 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~ 363 (460)
.|++++|.+.|+.+.+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=9.5e-06 Score=68.83 Aligned_cols=125 Identities=14% Similarity=-0.012 Sum_probs=66.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCH----HHHHHHHHHHHcc
Q 012577 202 ILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWL----DVCMAAIEAWGKL 277 (460)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~li~~~~~~ 277 (460)
.+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+.....++. ..+..+..++...
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34444555566666666655554433 22223333444555556666666555544433322 2345555666666
Q ss_pred CCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 278 NKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666653322132 224455556666666666666666666664
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=1.4e-06 Score=66.68 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+.+.|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|+++....+- +...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHHH
Confidence 44566777888999999999999999999874 568889999999999999999999999999887643 445778889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.+|...|++++|.+.|++..+..
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999998763
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=4e-06 Score=74.67 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGK 276 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 276 (460)
...+..+...+.+.|++++|+..|++..+........ ..+.+..+- ......|..+..+|.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~-----~~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQ-----ALRLASHLNLAMCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4556666666667777777777776666543221100 000000000 0012234444455555
Q ss_pred cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhH
Q 012577 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (460)
.|++++|+..+++..+..+. +...|..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|
T Consensus 209 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544322 44455555555555555555555555555542 23444555555555555555555
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.2e-05 Score=59.92 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...++++.+..+ .+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHH
Confidence 345556666666677777777777666653 44566666677777777777777777776665542 234566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012577 380 YAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~ 399 (460)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=6.5e-07 Score=73.09 Aligned_cols=96 Identities=19% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS---------------TKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
.+..+...+...|++++|...|++..+...... ...+..+..+|...|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 345555566666666666666666655322100 1344444444555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
+.+...+..+..+|...|++++|.+.|+++.+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23344444444445555555555555554444
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=8.8e-06 Score=75.32 Aligned_cols=124 Identities=8% Similarity=-0.072 Sum_probs=66.6
Q ss_pred HHccCCHHHHHHHHHHHHhc----ccCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHH
Q 012577 274 WGKLNKVEEAEAVFKRMSKT----WKKL-STKHYTALLKVYADHKMLSKGKDLVKQMAES--GC---HIGPLAWDALVKL 343 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~ 343 (460)
+...|+.+.|..++...... +..+ -..++..+...|...|++++|..+++.+... +. +....++..++..
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 33455666666666554431 1111 1345556666667777777777766665442 11 1113456666666
Q ss_pred HHcCCChhhHHHHHHHHHHhCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 344 HVEGGEVEKADSILLKAQQQNKFKPM-----FSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
|...|++++|..++++......-.++ ...+..+...+...|++++|...|.+..
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77777777777776665432211111 1334445555566677777766666554
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=0.00028 Score=61.66 Aligned_cols=248 Identities=7% Similarity=-0.086 Sum_probs=126.4
Q ss_pred hhHHHHHHHH---HHcCCCH-HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-----------hHHHHHHHHHHHcC
Q 012577 93 EVVYRTLLAN---CVAGNNV-KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-----------KKVADVLLLMEKEN 157 (460)
Q Consensus 93 ~~~~~~ll~~---~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----------~~a~~~~~~~~~~~ 157 (460)
+..|..+... ..+.|.+ ++|+++++.++..+. -+...|+.--..+...+. .++..+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3345444433 2345554 478888888887642 133334433222222111 34445555555443
Q ss_pred CCCCHHHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCCHHH
Q 012577 158 VKLTQFSYKILIDIKGQSN--DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR-KEKAEAMLKEMEGDNLKEHRWT 234 (460)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 234 (460)
+-+..+|+.-...+.+.+ ++++++++++.+.+.. +-|..+|+.-...+...|. ++++++.+..+.+.++. |...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 445555555555555555 3566666666666554 4455555555555555555 35666666666655433 4445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc--
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH-- 312 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-- 312 (460)
|+.....+...+....+ ++ ..-...+.++++++.+.......+. |...|+.+-..+.+.
T Consensus 182 W~~R~~ll~~l~~~~~~----------~~--------~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDS----------GP--------QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHHHHHSCCC------------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhhhcccc----------cc--------ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccC
Confidence 54444433332110000 00 0000013356666777666665444 666666555554444
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHHcCCChhhHHHHHHHHHHhCC
Q 012577 313 ---------KMLSKGKDLVKQMAESGCHIGP-LAWDALVK---LHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 313 ---------g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~---~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
+.++++++.++++.+.. ||. -.+..++. .....|..+++..++.++.+.++
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34678888888888753 443 22222221 22245677788888888877654
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=9.7e-07 Score=72.03 Aligned_cols=144 Identities=7% Similarity=-0.082 Sum_probs=105.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------H
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP----------------L 335 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~ 335 (460)
......|+++.+.+.++.-..... .....+..+...+...|++++|...|++..+.. +.+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence 334445556666655543322211 144567788889999999999999999998852 2232 7
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
.+..+..+|.+.|++++|...++++.+..+ .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 888899999999999999999999988653 456788889999999999999999999999875 55777888888887
Q ss_pred HhcCC
Q 012577 416 INAKT 420 (460)
Q Consensus 416 ~~~g~ 420 (460)
...++
T Consensus 167 ~~~~~ 171 (198)
T 2fbn_A 167 NKLKE 171 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.3e-05 Score=72.48 Aligned_cols=191 Identities=8% Similarity=-0.032 Sum_probs=113.5
Q ss_pred HHHhcCc-hHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCCH-
Q 012577 137 LYKRLDK-KKVADVLLLMEKENVKLT----------------QFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPDS- 197 (460)
Q Consensus 137 ~~~~~~~-~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~- 197 (460)
.+.+.|+ .+|.+.|....+...... ...+..+...|...|++++|.+.+..+... +..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 4455566 778887777776532111 123566777788888888888877776532 111222
Q ss_pred ---HHHHHHHHHHHhCCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-------CC
Q 012577 198 ---STQAILAKHYVSGGRKEKAEAMLKEMEG----DNLKE-HRWTCRLLLPLYAELGKADQVARIWKLCES-------NP 262 (460)
Q Consensus 198 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~ 262 (460)
.+.+.+...+...|++++|..+++.... .+..+ -..++..+...|...|++++|..+++.+.. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1223333344456777888777776643 22222 234566777777788888888777765432 11
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--cC-c-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 263 -WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW--KK-L-S--TKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 263 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
....+..++..|...|++++|..+++...... .. | . ...+..+...+...|++++|...|.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23356777777777888888887777665421 11 1 1 23455556666677777777777666654
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=4.4e-06 Score=60.48 Aligned_cols=99 Identities=12% Similarity=-0.067 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++++.+..+...+...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555555556666666666666655542 3345555556666666666666666666655443210134555556666
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 012577 380 YAKR-GDIHSTEKIFHRMRQV 399 (460)
Q Consensus 380 ~~~~-g~~~~a~~~~~~m~~~ 399 (460)
+.+. |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666554
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=1e-05 Score=60.41 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=69.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG--CHIG----PLAWDA 339 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 339 (460)
.+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..++..++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556677777788888888888877775443 56777778888888888888888887776532 1111 235666
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHh
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+..++...|++++|++.|++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777788888888888888887664
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=1.4e-05 Score=60.45 Aligned_cols=99 Identities=5% Similarity=-0.059 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHHH
Confidence 45556666666666666666666666666553 33456666666666666666666666666655432 2345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666543
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=6.5e-06 Score=59.58 Aligned_cols=100 Identities=10% Similarity=-0.020 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALV 341 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li 341 (460)
...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++...+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 345566777788888899999988888876443 67788888889999999999999999988863 44 578888889
Q ss_pred HHHHcC-CChhhHHHHHHHHHHhCC
Q 012577 342 KLHVEG-GEVEKADSILLKAQQQNK 365 (460)
Q Consensus 342 ~~~~~~-~~~~~a~~~~~~~~~~~~ 365 (460)
..+.+. |++++|.+.+++.....+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999998876543
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=2e-05 Score=57.46 Aligned_cols=98 Identities=8% Similarity=-0.051 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
..+..+...+...|++++|...|+......+. +...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34566677777788888888888887765432 66777778888888888888888888887763 44677788888888
Q ss_pred HcCCChhhHHHHHHHHHHhC
Q 012577 345 VEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~ 364 (460)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888876544
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.8e-05 Score=58.87 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|...++...+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4566677778888888888888888776443 67788888888888888888888888888764 446778888888888
Q ss_pred cCCChhhHHHHHHHHHHhC
Q 012577 346 EGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~ 364 (460)
..|++++|...|+++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888877643
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=1.1e-05 Score=63.34 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|+++.+..+ .+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 45678888999999999999999999999874 55789999999999999999999999999988753 3467889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.+|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.2e-05 Score=60.17 Aligned_cols=108 Identities=9% Similarity=-0.039 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSY 373 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (460)
+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+..+ .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHHH
Confidence 3445555566666666666666666666553 233 45566666666666666666666666655432 234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 012577 374 MLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQT 410 (460)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 410 (460)
..+..++...|++++|...|++..+.. +.+...+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHH
Confidence 666666666677777777776666653 333444433
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=1.2e-05 Score=60.82 Aligned_cols=100 Identities=15% Similarity=-0.050 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+...+..+...+...|++++|...|+......+. +...|..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4556777777788888888888888887776443 56778888888888888888888888888764 446778888888
Q ss_pred HHHcCCChhhHHHHHHHHHHhC
Q 012577 343 LHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
+|...|++++|...|+++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 8888888888888888876643
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=1.2e-05 Score=59.95 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC-cC----HHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK-PM----FSSYM 374 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 374 (460)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++....+-. ++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555666666666666666666666543 3455566666666666666666666666665543211 11 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
.+..++.+.|++++|.+.|+++.+.. |+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 66666777777777777777776643 344444444433
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=9.8e-06 Score=63.13 Aligned_cols=134 Identities=11% Similarity=-0.044 Sum_probs=86.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LS----TKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PL 335 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 335 (460)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++...+..- ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455566666667777777766665543111 11 13566677777788888888888777654210 011 34
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFK----PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+..+...+...|++++|.+.+++..+...-. .....+..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56677777888888888888888776432111 11345667778888889999999988887653
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=9.7e-06 Score=60.54 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=71.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC--HIG----PLAWDA 339 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 339 (460)
.+..+...+...|++++|...|+...+..+ .+...+..+...+...|++++|...++.+.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 455566667777777777777777766543 2566677777777777888888777777766421 112 566777
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+...|++++|.+.|+++.+.. |+......+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 7777888888888888888776643 3444444433
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=2e-06 Score=63.27 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHhcc--cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 277 LNKVEEAEAVFKRMSKTW--KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|...+++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555666666555542 11133455555566666666666666666665542 334555555566666666666666
Q ss_pred HHHHHHHHhCC
Q 012577 355 SILLKAQQQNK 365 (460)
Q Consensus 355 ~~~~~~~~~~~ 365 (460)
..+++..+..+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 66665555443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.26 E-value=9.4e-06 Score=60.03 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|+..|+++.+..+ .+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 3444555566666666666666666542 33555666666666666666666666666655442 23345555666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 012577 382 KRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~ 399 (460)
+.|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.6e-05 Score=57.38 Aligned_cols=61 Identities=10% Similarity=-0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+..+...|...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444443331 22333344444444444444444444444433
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=2.1e-05 Score=58.09 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+.+.|++++|...|+...+..+. +...|..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3556677888899999999999999886554 77888889999999999999999999998874 446788888999999
Q ss_pred cCCChhhHHHHHHHHHHhC
Q 012577 346 EGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~ 364 (460)
..|++++|...++++.+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=7.6e-06 Score=76.54 Aligned_cols=119 Identities=8% Similarity=-0.063 Sum_probs=77.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
..+.+.|++++|.+.|++..+..+. +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3455667777777777777765433 56677777777777778888877777777753 445677777777777778888
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 012577 352 KADSILLKAQQQNKFKPMFSSYMLIMDQ--YAKRGDIHSTEKIFH 394 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 394 (460)
+|.+.|+++.+..+-.++ .+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888887777766543333 33333333 667777777777777
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.20 E-value=0.00013 Score=54.29 Aligned_cols=94 Identities=7% Similarity=-0.066 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHH
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGP---LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQY 380 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 380 (460)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++.+..+-.+. ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455555555555555555432 1122 34445555555555555555555555544322111 23344455555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 012577 381 AKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 381 ~~~g~~~~a~~~~~~m~~~ 399 (460)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5556666666666655554
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=8.1e-05 Score=55.39 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=69.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLST---KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG---PLAWDALVK 342 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 342 (460)
.+...+...|++++|...|+...+..+. +. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455667778888888888887765432 23 467777788888888888888888887753 233 566777888
Q ss_pred HHHcCCChhhHHHHHHHHHHhC
Q 012577 343 LHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
++...|++++|...|+++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888887765
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=4e-05 Score=59.57 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=9.9
Q ss_pred HHHHHHHHcCCChhhHHHHHHHH
Q 012577 338 DALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
..+...+...|++++|.+.+++.
T Consensus 133 ~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 133 WSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 33344444444444444444443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=3.1e-05 Score=60.61 Aligned_cols=65 Identities=5% Similarity=0.012 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
...|..+..+|.+.|++++|+..++++++..+ .+...|..+..+|...|++++|...|++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 35566666667777777777777777666542 234566666677777777777777777776653
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=2.7e-05 Score=72.79 Aligned_cols=116 Identities=14% Similarity=-0.092 Sum_probs=61.3
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.... +..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 4455566666666666655542 334556666666666666666666666666654322 44555566666666666666
Q ss_pred HHHHHHHhcc-CC-CHHHHHHHHHH--HHccCCHHHHHHHHH
Q 012577 251 VARIWKLCES-NP-WLDVCMAAIEA--WGKLNKVEEAEAVFK 288 (460)
Q Consensus 251 a~~~~~~~~~-~~-~~~~~~~li~~--~~~~~~~~~a~~~~~ 288 (460)
|...+++... .| +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666655443 22 22233333333 555566666666665
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=8.8e-05 Score=69.00 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--------------TKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...++.+++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3566777778888888888888888776533211 4677788888888888888888888888763
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK-IFHRMR 397 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 397 (460)
+.+...|..+..+|...|++++|...|+++.+..+- +...+..+..++.+.|+.+++.+ .++.|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888765432 33466677777777777776653 444443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=0.00012 Score=57.08 Aligned_cols=97 Identities=9% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc--------c---------cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKT--------W---------KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
+......+.+.|++++|+..|...... . .+.+...|..+..+|.+.|++++|...++..++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555566666666666666655543 0 01134678888889999999999999999988874
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
+.+...|..+..+|...|++++|...|++..+..
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 5578888889999999999999999999887754
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=8.3e-05 Score=66.93 Aligned_cols=120 Identities=11% Similarity=-0.094 Sum_probs=62.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcc---------------cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTW---------------KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
+..+...+.+.|++++|+..|++..+.- .+.+...|..+..+|.+.|++++|...+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4555666666677777777666665410 01123445555555555666666666665555542 2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 332 IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 389 (460)
.+...+..+..+|...|++++|.+.|+++.+..+ .+...+..+..++.+.++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666665555554432 1233444444444444444433
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=8.2e-05 Score=69.20 Aligned_cols=138 Identities=11% Similarity=-0.019 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGK 276 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 276 (460)
...|..+...+.+.|++++|+..|++..+....... + ..+...+ .. ......|..+..+|.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~-~~----~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKA-SE----SFLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHH-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHH-HH----HHHHHHHHHHHHHHHH
Confidence 456777788888888888888888887764222110 0 0000000 00 0012345555666666
Q ss_pred cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.|++++|+..+++.++.... +...|..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.++.+++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666654332 45566666666666666666666666666542 234445555556666666555554
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=2.3e-05 Score=57.51 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=76.4
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 012577 311 DHKMLSKGKDLVKQMAESG--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (460)
..|++++|...|++..+.+ -+.+...+..+...|...|++++|...|+++.+..+- +...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHH
Confidence 4688999999999998864 2335678888999999999999999999999887643 45678889999999999999
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHHHHHH
Q 012577 389 TEKIFHRMRQVG-YVARFKQFQTLVQAYI 416 (460)
Q Consensus 389 a~~~~~~m~~~~-~~~~~~~~~~l~~~~~ 416 (460)
|+..+++..+.. -.|+...|...+..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999988763 1223333444444443
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=5.1e-05 Score=55.35 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
.|+..|+...+..+. +...+..+...|...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555554332 45556666666666666666666666666543 3345556666666666666666666666655
Q ss_pred Hh
Q 012577 362 QQ 363 (460)
Q Consensus 362 ~~ 363 (460)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=9.9e-05 Score=66.43 Aligned_cols=94 Identities=10% Similarity=-0.180 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSE---------------GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
.+..+...+.+.|++++|++.|++..+. --+.+..+|..+..+|.+.|++++|+..+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4666777788888888888888877651 0012234555555555566666666666655555432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 229 KEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
.+...+..+..+|...|++++|...|+..
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 13344444444555555555554444443
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.00094 Score=63.67 Aligned_cols=170 Identities=9% Similarity=-0.101 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR----------KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG-- 246 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 246 (460)
++|++.++++.... +-+..+|+.--.++...|+ +++++..++.+.+...+ +..+|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 34455555555443 2334444444444443333 55555555555554433 4445555555555555
Q ss_pred ChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc-----------
Q 012577 247 KADQVARIWKLCES-NP-WLDVCMAAIEAWGKLN-KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH----------- 312 (460)
Q Consensus 247 ~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------- 312 (460)
+++++...++.+.. +| +...|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 44555555555443 22 3445555444555555 566666666666665544 566666655555442
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh
Q 012577 313 ---KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352 (460)
Q Consensus 313 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (460)
+.++++.+.++.+.... +-|...|..+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888888764 5578888888888887777444
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.00063 Score=64.86 Aligned_cols=170 Identities=5% Similarity=-0.148 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSND----------LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-- 211 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-- 211 (460)
++|.+.++.+.... +-+...|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 44455555555442 2333444444444444444 677777777776654 456666766666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHcc-----------
Q 012577 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG-KADQVARIWKLCES-NP-WLDVCMAAIEAWGKL----------- 277 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~----------- 277 (460)
++++++..++++.+.+.. +..+|+.-..++.+.| .++++.+.++.+.. +| +...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 557777777777776544 5666666666666666 66777777666544 33 455565554444432
Q ss_pred ---CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHH
Q 012577 278 ---NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK 317 (460)
Q Consensus 278 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 317 (460)
+.++++++.++......+. |...|..+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999988887654 77888888888887776444
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=6.3e-05 Score=66.90 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45667788888999999999999987765 344331 112222333322211 12455566666
Q ss_pred HhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcCCHHHHH
Q 012577 243 AELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHKMLSKGK 319 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 319 (460)
.+.|++++|...++.... .| +...+..+..+|...|++++|...|+...+..+. +...+..+... ....+..+++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665443 33 4456666666666666666666666666654322 33344444333 22344555666
Q ss_pred HHHHHHHH
Q 012577 320 DLVKQMAE 327 (460)
Q Consensus 320 ~~~~~~~~ 327 (460)
..|..|..
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 66666654
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=0.00013 Score=55.12 Aligned_cols=108 Identities=18% Similarity=0.059 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE----LGKADQVA 252 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 252 (460)
++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555555544444 22222 3333334444444444444444432 22333344444433 33444444
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHh
Q 012577 253 RIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSK 292 (460)
Q Consensus 253 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 292 (460)
.+|+......+...+..+...|.. .+++++|.+.|+...+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 444433333333333333333333 3344444444443333
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=7.2e-05 Score=69.60 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc---------CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhc-----ccC-c
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES---------NPWL-DVCMAAIEAWGKLNKVEEAEAVFKRMSKT-----WKK-L 297 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-p 297 (460)
+++.|..+|...|++++|..++++... .|++ .+++.|...|...|++++|..++++..+- |.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444444455555544444443221 1222 24566666666666666666666655431 211 2
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 298 S-TKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 298 ~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+ ..+.+.+..++...+.+.+|..++..+++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23345555666667777777777777765
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.91 E-value=0.00026 Score=54.10 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCc------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL------ST-----KHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+......+.+.|++++|+..|++.++..+.. +. ..|..+..++.+.|++++|+..++..++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445556666777777777777666643320 11 1445555555555555555555555444
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=5.1e-05 Score=67.48 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH-
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ- 379 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 379 (460)
.|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|...|+++.+..+- +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 44445555555555555555555555542 234455555555555555555555555555433211 11222333222
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~ 398 (460)
....+..+.+...|++|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 1223444555555555544
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.00044 Score=52.24 Aligned_cols=110 Identities=8% Similarity=-0.085 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHH
Q 012577 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVF 287 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~ 287 (460)
++++|+..|++..+.|. |+.. +...|...+.+++|.++|+......+...+..+...|.. .+++++|.+.|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 45666677766666652 2222 445555555555555555555545555555555555554 45555555555
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYAD----HKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 329 (460)
++..+.| ++..+..|...|.. .+++++|...|+...+.|
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5554442 33444444444444 445555555555554443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=3.5e-05 Score=55.62 Aligned_cols=94 Identities=9% Similarity=-0.139 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-C----HHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE-H----RWTC 235 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~ 235 (460)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|+..+++..+..... + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44567777888888888888888888887664 4567788888888888888888888888887754321 1 3344
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 012577 236 RLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~ 255 (460)
..+..++...|+.+.+...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 45555555555555544433
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00068 Score=51.82 Aligned_cols=100 Identities=7% Similarity=-0.087 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHcCCChhhHHHHHHHHHHh----C
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHI------GP-----LAWDALVKLHVEGGEVEKADSILLKAQQQ----N 364 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~ 364 (460)
..+......+.+.|++++|...|+..++..-.. +. ..|..+..++.+.|++++|+..+++.++. .
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 445667778889999999999999998853110 22 38899999999999999999999999875 0
Q ss_pred CCCcC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 365 KFKPM-FSSY----MLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 365 ~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+.|+ ...| .....++...|++++|+..|++..+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11343 4567 78888999999999999999998864
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00019 Score=66.83 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=73.8
Q ss_pred hcCChhHHHHHHHHhcc---------CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----cc-Cc-CHHHHHHHH
Q 012577 244 ELGKADQVARIWKLCES---------NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-----WK-KL-STKHYTALL 306 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~---------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li 306 (460)
..|++++|..++++... .|+ ..+++.|...|...|++++|..++++.++. |. .| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45566666555554322 222 337899999999999999999999887642 21 12 235677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 307 KVYADHKMLSKGKDLVKQMAES---GCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 307 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
..|...|++++|..++++..+- -+.|+ ..+...+-.++...+.+++|..++..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776531 01122 22334444455555555666665555543
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=0.00021 Score=50.47 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
...+..+...|...|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555555555555555442 22344555555555555555555555555443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00055 Score=46.95 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
..+..+...+...|++++|...+++..+..+ .+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3444555555555666666666655554432 233455555556666666666666666665543 3344455555444
Q ss_pred HHh
Q 012577 415 YIN 417 (460)
Q Consensus 415 ~~~ 417 (460)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=0.00044 Score=50.19 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
.|++.|++..+.. +.+...+..+...|...|++++|+..|++..+... .+...+..+..+|...|++++|...|+.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444454444432 23444555555555555555555555555554332 1334444455555555555555555444
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.0006 Score=46.78 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4456667777777888888888887777653 345667777777777888888888887777665322 34455555544
Q ss_pred HHh
Q 012577 242 YAE 244 (460)
Q Consensus 242 ~~~ 244 (460)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00073 Score=48.42 Aligned_cols=63 Identities=8% Similarity=-0.096 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
..+..+...+...|++++|.+.|+++.+..+ .+...+..+..++.+.|++++|++.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444455555555555555555555544332 23344455555555555555555555555543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.49 E-value=0.00049 Score=48.54 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
-+...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677778888888888888888888887664 44567788888888888888888888887664
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.42 E-value=0.00041 Score=52.94 Aligned_cols=99 Identities=10% Similarity=0.001 Sum_probs=73.6
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH----------HHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL----------QKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
..+.+.+++|++.++...... |.+...+..+..++...+++ ++|+..|++..+..| ...+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345667888999998888775 56778888888888888765 488888888776655 46778888888
Q ss_pred HHcCC-----------CHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 103 CVAGN-----------NVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 103 ~~~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
|...| ++++|++.|++.++. .|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 87764 788888888888876 455555544443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.42 E-value=0.00057 Score=52.10 Aligned_cols=68 Identities=7% Similarity=-0.154 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 278 NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML----------SKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++.++.. +-+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 4455566666655554433 555555555555555443 34455555544432 22334444444444443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.23 E-value=0.043 Score=48.22 Aligned_cols=74 Identities=7% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 409 (460)
+.++.++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+.+.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5567777777666666688888888888887764 66667777777778888888888888887775 35555543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.85 E-value=0.0052 Score=56.17 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc-----cc-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKT-----WK-KLS-TKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+++.+...|...|++++|..++++.++- |. .|+ ..+++.|...|...|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4555566666666666666665554431 11 122 34566777777777777777777766543
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.82 E-value=0.0047 Score=56.51 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhccc--CC----CChhhhHHHHHHHHHhhCHHHHHHHHHhcccC--------CC
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKK--LD----FIERDYASCLDLIAKLRGLQKAESYIQKIPES--------FR 91 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~ 91 (460)
.....+..+...|++++|+.+++....... +. ....+++.+...|...|++++|+.++++.... .|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 344556667788999999999988775421 11 22456788888899999999999988875322 33
Q ss_pred c-hhHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 012577 92 G-EVVYRTLLANCVAGNNVKKAEEVFNRMKD 121 (460)
Q Consensus 92 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (460)
+ ..+++.|...|...|++++|..++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 35688899999999999999998887654
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0038 Score=43.55 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=26.7
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTK-HYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
.+.+.|++++|...|+...+..+. +.. .+..+..+|...|++++|...|+...+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555555443222 333 4444555555555555555555555443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.79 E-value=0.035 Score=48.83 Aligned_cols=141 Identities=7% Similarity=-0.042 Sum_probs=86.4
Q ss_pred CCChhhhHHHHHHHHH--h---hCHHHHHHHHHhcccCCCc-hhHHHHHHHHHH----cCC-C---HHHHHHHHHHHHh-
Q 012577 57 DFIERDYASCLDLIAK--L---RGLQKAESYIQKIPESFRG-EVVYRTLLANCV----AGN-N---VKKAEEVFNRMKD- 121 (460)
Q Consensus 57 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~----~~~-~---~~~a~~~~~~m~~- 121 (460)
+.+...|...+++... . .+..+|..+|++..+..|+ ...|..+.-+|. ..+ . .......+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4455666666655432 2 2356788888887766564 233333322221 111 1 1111112222111
Q ss_pred CCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 012577 122 KGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQ 200 (460)
Q Consensus 122 ~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 200 (460)
...+.++.+|..+...+...|+ ++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 1224567777777666665677 88888888888875 78778888888888999999999999888876 5676665
Q ss_pred H
Q 012577 201 A 201 (460)
Q Consensus 201 ~ 201 (460)
.
T Consensus 347 ~ 347 (372)
T 3ly7_A 347 Y 347 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.75 E-value=0.0065 Score=55.51 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHh-----CCCCcC-HHHHHHHHH
Q 012577 312 HKMLSKGKDLVKQMAES---GCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQ-----NKFKPM-FSSYMLIMD 378 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~l~~ 378 (460)
.|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|..+++++.+- .+-.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776542 12222 356777788888888888888877776542 122333 245777888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~ 398 (460)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887764
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.68 E-value=0.017 Score=40.02 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPL-AWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
....+...|++++|...++.+.+.. +.+.. .+..+..+|...|++++|.+.|+++.+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455667777888888887777753 34556 777777777777788888888777776553
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.67 E-value=0.032 Score=38.35 Aligned_cols=67 Identities=9% Similarity=-0.052 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 332 IGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 332 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.|+..+..+..++...++ .++|..++++..+.++ -+......+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455555555555543333 5666666666665543 233445555566666666666666666666653
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.65 E-value=0.011 Score=54.12 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc-----c-cCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKT-----W-KKL-STKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+++.+...|...|++++|+.++++.++- | ..| ...+++.|...|...|++++|..++++..+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555544321 1 112 234566667777777777777776666543
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.64 E-value=0.025 Score=39.84 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQNK-----FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
+..-+-.+...+.+.|+++.|...|+.+.+... -.+....+..+..++.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344445566666666666666666666554321 1123445666666667777777777777766664
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.54 E-value=0.051 Score=37.31 Aligned_cols=67 Identities=10% Similarity=-0.022 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 298 STKHYTALLKVYADHKM---LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
|+..+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++.+..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55566666666654433 567777777777653 44566666677777777777777777777766543
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.16 Score=50.93 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANC 103 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~ 103 (460)
...+..++..+.+.|.++.|+++.+. + ..-.......|++++|.++.+.+ .+...|..+...+
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~--------~-----~~~f~~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~a 691 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPD--------Q-----DQKFELALKVGQLTLARDLLTDE----SAEMKWRALGDAS 691 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCC--------H-----HHHHHHHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCC--------c-----chheehhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHH
Confidence 44456666666677777777655421 1 11133456788999998887766 4567899999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc
Q 012577 104 VAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK 143 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 143 (460)
.+.|+++.|.++|.++.. |..+...+...++
T Consensus 692 l~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 692 LQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN 722 (814)
T ss_dssp HHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC
Confidence 999999999999988754 3344445554554
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.45 E-value=0.06 Score=53.99 Aligned_cols=45 Identities=11% Similarity=-0.114 Sum_probs=21.3
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRM 290 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 290 (460)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555443322 23344555555555555555555555443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.43 E-value=0.049 Score=40.99 Aligned_cols=81 Identities=17% Similarity=-0.005 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhhHHH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK---MLSKGKDLVKQMAESGCHI--GPLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~ 355 (460)
..+.+.|.+..+.+. ++..+...+..++++.+ +.+++..+++...+.. .| +...+-.+..+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555444444 45666666666666665 4456666666666653 23 23444445555666666666666
Q ss_pred HHHHHHHh
Q 012577 356 ILLKAQQQ 363 (460)
Q Consensus 356 ~~~~~~~~ 363 (460)
+++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666654
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.11 E-value=0.28 Score=36.53 Aligned_cols=117 Identities=9% Similarity=0.058 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHcCCChhhHHHHHHHHHHhC
Q 012577 298 STKHYTALLKVYADHKML------SKGKDLVKQMAESGCHIGPL----AWDALVK---LHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~----~~~~li~---~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
|..+|-..+....+.|+. ++..++|++.... ++|+.. .|..+-- .+...+++++|.++|+.+...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 444555555555555555 5556666666554 455321 0100000 112337899999999988665
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 365 KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
+-.- ...|....+.-.+.|+...|.+++.+....+ +-+...+.+.++.+-..
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHHHHTT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHhhhcC
Confidence 3334 6777777778889999999999999999887 33456666666655433
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.01 E-value=0.19 Score=37.85 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG---EVEKADSILLKAQQQNKFKP--MFSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 389 (460)
...+.+-|.+....| +++..+...+..++++.+ ++++++.+++...+.. .| ....+-.+.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 455666677666665 478888888999999988 6779999999998764 23 234455566788999999999
Q ss_pred HHHHHHHHHcC
Q 012577 390 EKIFHRMRQVG 400 (460)
Q Consensus 390 ~~~~~~m~~~~ 400 (460)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.32 Score=37.63 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=19.2
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 209 SGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444555554444433 1234444444444444444444444443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.75 E-value=0.77 Score=38.75 Aligned_cols=89 Identities=8% Similarity=0.006 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChH
Q 012577 144 KKVADVLLLMEKENVKLT---QFSYKILIDIKGQ-----SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG-GRKE 214 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~~~~ 214 (460)
..+...+++..+. .|+ -..|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3445555555554 455 4467777777877 388888888888887764212367777777777774 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHHH
Q 012577 215 KAEAMLKEMEGDNLK--EHRWT 234 (460)
Q Consensus 215 ~a~~~~~~~~~~~~~--~~~~~ 234 (460)
++.+.+++....... |+...
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHcCCCCCCCChhH
Confidence 888888888877665 55433
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.66 E-value=0.037 Score=38.98 Aligned_cols=33 Identities=12% Similarity=-0.181 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhc
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETN 53 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 53 (460)
.++...+..+...+...+++..|+..|+.....
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~ 34 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQ 34 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHh
Confidence 356667777777777777777777777665543
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.54 Score=36.35 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=48.5
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.++..++
T Consensus 15 AL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 34455555555555443 3344555555555556666666655554433 33333444445555554444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
-+.....| . ++.....+...|+++++.++|.+
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433 1 12222333344555555555543
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.65 E-value=0.41 Score=34.86 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
+|++...-.+..+|.+.|+..+|.+++.+..+.|
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.23 E-value=0.19 Score=36.31 Aligned_cols=80 Identities=15% Similarity=-0.017 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhhHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK---GKDLVKQMAESGCHI--GPLAWDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~ 356 (460)
.+.+-|......|. |+..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.+..++.+.|++++|.++
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444333333 344555555555555554433 555555554432 12 122333344455555555555555
Q ss_pred HHHHHHh
Q 012577 357 LLKAQQQ 363 (460)
Q Consensus 357 ~~~~~~~ 363 (460)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.14 E-value=0.23 Score=41.90 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHHHHHHHHc-----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 012577 336 AWDALVKLHVE-----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR-GDIHSTEKIFHRMRQV 399 (460)
Q Consensus 336 ~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 399 (460)
.|..+...|.+ .|+.++|.+.|++.++.++-. +..++......+++. |+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444 245555555555554433110 123333444444442 4555555555555443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.13 E-value=0.64 Score=33.89 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK 229 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (460)
.......++.....|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|..++.+.-+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344455566666677777777777665332 2566677777777777777777777777777776654
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.95 E-value=3.4 Score=41.34 Aligned_cols=150 Identities=9% Similarity=0.023 Sum_probs=68.5
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHhccCCCHHH-H---HHHHHHHHccCCH
Q 012577 207 YVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY--AELGKADQVARIWKLCESNPWLDV-C---MAAIEAWGKLNKV 280 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~-~---~~li~~~~~~~~~ 280 (460)
+.-.|+.+-...++..+.+.. +..+...+.-++ ...|+.+.+..+.+.+....+... | .++..+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 334555555555555544421 222222333332 355666666666665554333332 2 2334455566665
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hhHHHHHHH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV-EKADSILLK 359 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~ 359 (460)
....+++..+... ...+......+.-++...|+.+.+.++++.+.+.+ .|....-..+..+....|.. .++..++..
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 5555566665543 11233333333334444555555555555554432 33333333333333334333 455666666
Q ss_pred HH
Q 012577 360 AQ 361 (460)
Q Consensus 360 ~~ 361 (460)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.96 E-value=3.7 Score=37.59 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=44.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLS-----TKHYTALLKVYADHKMLSKGKDLVKQMAE----SGCHIG--PLAW 337 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~ 337 (460)
.|...|...|++.+|..++..+...-...+ ...+...+..|...+++.+|..++..+.. ...+|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 344555555555555555555442211111 12344445555556666666665555432 111111 1234
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 338 DALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
...+..+...+++.+|.+.|.++..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4445555555666666655555544
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.87 E-value=1.5 Score=32.73 Aligned_cols=100 Identities=8% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHccCCH------HHHHHHHHHHHhcccCcCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHc
Q 012577 262 PWLDVCMAAIEAWGKLNKV------EEAEAVFKRMSKTWKKLSTK----HYTALLK---VYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~~~~~ 328 (460)
.+..+|-..+...-+.|+. +...++|++.... ++|+.. .|-.+-- .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444555555555555655 5566666655553 333321 1111110 112236777888888877665
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+-.. ...|....+--.+.|++..|.+++......
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3222 666666666667788888888888877654
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.34 Score=47.25 Aligned_cols=128 Identities=10% Similarity=0.004 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHc------CCCCC-HH--
Q 012577 96 YRTLLANCVAGNN-VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKE------NVKLT-QF-- 163 (460)
Q Consensus 96 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~------~~~~~-~~-- 163 (460)
-..++..+...++ .+.|..+|+++.+.....+......++..+...+. .+|.+++.+..+. ..++. ..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666666 58899999998886422222222333444444433 4555555444321 11221 11
Q ss_pred --------HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 164 --------SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 164 --------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
....=.+.+...|+++-|+++-++..... +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222445677899999999999988763 4458899999999999999999999998773
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.71 E-value=1 Score=32.53 Aligned_cols=85 Identities=8% Similarity=-0.055 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh---HHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK---ADSILLKAQQQNKFKP--MFSSYMLIMDQYAKRGDIH 387 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 387 (460)
..+..+.+-+......| .++..+--.+.+++.+...... ++.+++.+.+.. .| .....-.+.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHH
Confidence 34455566666666655 3778888888899999887666 888888886643 23 2233445666899999999
Q ss_pred HHHHHHHHHHHcC
Q 012577 388 STEKIFHRMRQVG 400 (460)
Q Consensus 388 ~a~~~~~~m~~~~ 400 (460)
+|.+.++.+.+..
T Consensus 92 ~A~~~~~~lL~~e 104 (126)
T 1nzn_A 92 KALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999864
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=4.7 Score=36.85 Aligned_cols=97 Identities=10% Similarity=0.125 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCChhhHHHHHHHHHHh---CCCCcC--HH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHI-G----PLAWDALVKLHVEGGEVEKADSILLKAQQQ---NKFKPM--FS 371 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--~~ 371 (460)
...|...|...|++.+|.+++..+...-... + ...+...++.|...+++..|..++.++... ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 4567888999999999999999986532222 2 246777888999999999999999887431 112222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+...+..+...+++.+|-+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556777788889999999988887764
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.10 E-value=4 Score=35.33 Aligned_cols=110 Identities=7% Similarity=0.014 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHH----HHHHhCCCCCChhhhHHHHHHH
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVF----NRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++- +.+.+.++++|......++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44455556677777777776655322 344456655544443 4445566777776666666666
Q ss_pred HhcCc--hHHHHHHHHHH----HcC--CCCCHHHHHHHHHHHhhcCChhHHHHHH
Q 012577 139 KRLDK--KKVADVLLLME----KEN--VKLTQFSYKILIDIKGQSNDLTGMDQVV 185 (460)
Q Consensus 139 ~~~~~--~~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (460)
..... ..-..+.+.+. +.| -.-|......+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55543 11112222221 112 1224444455555555555555555554
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.80 E-value=0.00093 Score=60.12 Aligned_cols=192 Identities=10% Similarity=0.036 Sum_probs=86.8
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
|+..|..++....+.|.+++-.+++...++..+++..=+.|+-+|++.++..+-.+.+. .|+..-...+..-|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHH
Confidence 34455555555555555555555555555544444445555555555555433222211 23443444444444
Q ss_pred HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 139 KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 139 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
...|. +.|.-+|..+. -|.-|...+.+.|++..|.+.-++ ..++.||..+-.+|...+.+.-|.
T Consensus 155 f~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHH
Confidence 44443 22222221111 111222223333333333221111 234556666666666666666554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHcc
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKL 277 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~ 277 (460)
-.--.++-..-. ...++..|...|.+++...+++.-.. ....-.|+-|.-.|++-
T Consensus 220 icGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 220 MCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 433232211111 11345556666666666666665432 33444566666556554
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.08 E-value=1.2 Score=43.47 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=24.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
..|+++-|+++-+++.... +-+..+|..|..+|.+.|+++.|+-.++.+
T Consensus 349 ~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455555555555544322 123445555555555555555555555444
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.78 E-value=0.81 Score=41.10 Aligned_cols=195 Identities=11% Similarity=-0.022 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHH-hcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHh-hCHHHHHHHHHhcccC---------CC
Q 012577 23 SRAEIALAMANLR-TRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKL-RGLQKAESYIQKIPES---------FR 91 (460)
Q Consensus 23 ~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---------~~ 91 (460)
++... .++..|. ..|+.-...++.+.++..........+....+..+-+. +........+...... .-
T Consensus 32 ~~k~~-~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~ 110 (388)
T 2ff4_A 32 TPKQR-AVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTC 110 (388)
T ss_dssp SHHHH-HHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGB
T ss_pred ChHHH-HHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccc
Confidence 44444 3444444 44666666677777776541111223334444433221 1110000112111111 11
Q ss_pred chhHHHHHHHHH---HcCCCHHHHHHHHHHHHhC--CCC-CChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHH
Q 012577 92 GEVVYRTLLANC---VAGNNVKKAEEVFNRMKDK--GFP-VTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSY 165 (460)
Q Consensus 92 ~~~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~--g~~-~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (460)
|...|..++... ...|+.+.|.+.+.+.... |.. ++..... .+ .....-++++. ..+.
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~-w~--------~~~r~~l~~~~-------~~a~ 174 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ-FV--------EPFATALVEDK-------VLAH 174 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST-TH--------HHHHHHHHHHH-------HHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchh-HH--------HHHHHHHHHHH-------HHHH
Confidence 344566655432 3468899999988888764 321 2211100 00 11111122211 1234
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 012577 166 KILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-----DNLKEHRWTC 235 (460)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 235 (460)
..++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 557788889999999999999888664 66888999999999999999999999988754 4888887553
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.69 E-value=2.2 Score=29.15 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+..+-++.+...+..|++....+.+.+|.+.+++..|.++++.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555555544443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.68 E-value=1 Score=40.38 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-----VGYVARFKQ 407 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 407 (460)
.+...++..+...|+++++...+..+...++ -+...|..+|.++.+.|+..+|.+.|++..+ .|+.|+..+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4455566677777888888877777766553 3556777888888888888888888777653 477776554
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.18 E-value=20 Score=37.46 Aligned_cols=167 Identities=11% Similarity=0.025 Sum_probs=95.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCch
Q 012577 65 SCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKK 144 (460)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 144 (460)
.++..+.+.+..+.+.++....+. +...--.+..+|...|++++|.+.|.+.-. |+..+......+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~---------- 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL---------- 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH----------
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh----------
Confidence 455566667777777776655543 333334455677888888888888876422 222221111000
Q ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHH
Q 012577 145 KVADVLLLMEKEN--VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS----STQAILAKHYVSGGRKEKAEA 218 (460)
Q Consensus 145 ~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~ 218 (460)
.-+..+.... ...-..-|..++..+-+.+.++.+.++-....+..-+.+. ..|..+..++...|++++|..
T Consensus 883 ---~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 883 ---REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp ---HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ---cccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0011111110 0112344667777888888888888777766543212221 257777888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 219 MLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+-.+.....+ ......|+..++..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88777655443 3456666666666665443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.78 E-value=3.4 Score=28.07 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=66.2
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
.-....++|..+-+|+...+ . ..-+--.-+..+...|++++|..+.+..+. ||...|-+|.. .+.|..+++..
T Consensus 17 TG~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 17 SGQHCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNPW--PALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp HTTTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC--GGGHHHHHHHH--HHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHH
Confidence 34567788999999988775 2 222333345667889999999999999884 99999988765 57788888888
Q ss_pred HHHHHHhCCCCCChhhhH
Q 012577 115 VFNRMKDKGFPVTSFACN 132 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~ 132 (460)
-+.++...| .|....|.
T Consensus 90 rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 888888776 34444443
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.73 E-value=12 Score=38.96 Aligned_cols=169 Identities=10% Similarity=0.037 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC-CchhHHHHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF-RGEVVYRTLLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~ 104 (460)
....++..+...+.++.+.++..++.. ++...-.+..++..+|++++|..+|++..... .+...
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l--------- 878 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ--------- 878 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS---------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh---------
Confidence 344566777788888888777665432 33333457788899999999999999975431 11000
Q ss_pred cCCCHHHHHHHHHHHHhCCC--CCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCC
Q 012577 105 AGNNVKKAEEVFNRMKDKGF--PVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ----FSYKILIDIKGQSND 177 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~ 177 (460)
...... +..+..... ..-..-|..++..+.+.+. +.+.++-....+...+.+. ..|..+.+.+...|+
T Consensus 879 -~~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 879 -FAVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp -CSSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -hhhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 000001 111111110 1122345566666666665 5555544444433211121 257888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKA 216 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 216 (460)
+++|...+-.+.... --......|+..+|..|..+.-
T Consensus 954 ye~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SGGGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhh
Confidence 999999998887664 3356677777777777765543
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.67 E-value=3.5 Score=28.06 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=65.7
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
.-....++|..+-+|+...+ . ..-+--.-+..+...|++++|..+.+..+. ||...|-+|.. .+.|..+++..
T Consensus 18 TG~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 18 TGNHYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAY--PDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp HTTTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC--GGGHHHHHHHH--HHHTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHH
Confidence 34567788999999988775 2 222333345667889999999999999984 99999988865 46688888888
Q ss_pred HHHHHHhCCCCCChhhhH
Q 012577 115 VFNRMKDKGFPVTSFACN 132 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~ 132 (460)
-+.++...| .|....|.
T Consensus 91 rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 887887776 34444443
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.65 E-value=3.6 Score=28.15 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++.++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 335555556666666666666666666666666666666666665543
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.46 E-value=4.6 Score=29.34 Aligned_cols=73 Identities=11% Similarity=-0.078 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc
Q 012577 19 GNDLSRAEIALAMANLRTRRMY---GKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG 92 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 92 (460)
+..+++.+-......+.+..+. .+++.+++.+.+.++ ......+--+.-++.+.|+++.|+++.+.+.+..|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 5556677766666666665443 246666666655431 112233334555666777777777777766655443
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.16 E-value=10 Score=32.58 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEA----MLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 239 (460)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566666777777777777664432 12344555544433 344445566777766666666
Q ss_pred HHHHhcCChhH-HHHHHHH-------hc--cCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 240 PLYAELGKADQ-VARIWKL-------CE--SNPWLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 240 ~~~~~~~~~~~-a~~~~~~-------~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
+.+.....-+. -.++.+. .. ..++......+...|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66655332111 1122221 11 12466667777777777788877777664
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.96 E-value=4.6 Score=29.34 Aligned_cols=60 Identities=7% Similarity=-0.027 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV 341 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (460)
-+..+-++.+...+..|++......+.+|.+.+++..|..+|+-.+.+ +.+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 344455555555556666666666666666666666666666666554 233333444444
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.90 E-value=1.7 Score=33.05 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..--.+..+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3334577888999999999999886543
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.80 E-value=21 Score=35.88 Aligned_cols=243 Identities=11% Similarity=-0.028 Sum_probs=123.3
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC--C-----CCHHHHHHHHHHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL--K-----EHRWTCRLLLPLY 242 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 242 (460)
....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++.......- . +....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4556777777777766553210122 22333344445566666677777766554321 0 1111112222222
Q ss_pred --HhcCChhHHHHHHHHhccCCCHH-H---HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 243 --AELGKADQVARIWKLCESNPWLD-V---CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 243 --~~~~~~~~a~~~~~~~~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
...++. ++...+..+....+.. . -.++...++-.|+.+....++..+.+.. .-+..-...+.-++...|+.+
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 223333 4444444433333322 1 2233444556677777777777666532 112222333444455778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWD--ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
.+..+++.+.... .|....-. .+.-+|+..|+.....++++.+... ...++.-...+.-++.-.|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888877642 23222222 2334566677877777788877653 22334433334344555677666677776
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 395 RMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 395 ~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.+.+.+ .|..+.-..+.-+....|+
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSS
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCC
Confidence 555544 4555444444444444444
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.38 E-value=0.017 Score=52.22 Aligned_cols=223 Identities=10% Similarity=0.064 Sum_probs=117.2
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
.+.+|..|..+....+++.+|++.|-+ . -|+..|..++.+..+.|. ++...++....+.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 456788888888888888877766522 2 267777888888777777 55555555444432 23333346777
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
+|++.+++.+..+++. .||..-...+..-|...|.++.|.-+|..+-.. ..|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHH
Confidence 7888777765544432 355555566777777777777777666544221 122222333333333
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 251 VARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
|.+.- ++..++.+|..+-.+|...+.+.-|.-.--.+.-. ......++..|...|.+++.+.+++.-....
T Consensus 189 AVdaA---rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 189 AVDGA---RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp STTTT---TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHHH---HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 33211 11234445555555555555544443332222211 1112223444455555555555555444221
Q ss_pred CCCHHHHHHHHHHHHcC
Q 012577 331 HIGPLAWDALVKLHVEG 347 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~ 347 (460)
+....+|+-|.-.|++-
T Consensus 260 rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TCCHHHHHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHHhc
Confidence 23445555555555543
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.25 E-value=6.2 Score=29.10 Aligned_cols=68 Identities=9% Similarity=-0.124 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhcccch---hHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 21 DLSRAEIALAMANLRTRRMYG---KALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
.+++.+-......|.+..+.. +++.+++.+....+. ......--+.-++.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445555555555555443332 344455444443210 11112222333444455555555544444433
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.91 E-value=13 Score=32.24 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-----hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-----KKVADVLLLMEKENVKLTQFSYKILI 169 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li 169 (460)
.|.++..-|.+++++++|++++-.-.. .+.+.++ +-+.-+++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344566678899999999998654221 1112222 33444556666677788888777777
Q ss_pred HHHhhcCChhH-HHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 170 DIKGQSNDLTG-MDQVVEAMK----SEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 170 ~~~~~~~~~~~-a~~~~~~m~----~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
..+.....-+- =.++.++++ +.| -.-|......+...|.+.+++.+|..-|- .|-.+...+|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 77766554221 122222222 222 23466777778888888888888877662 23333335665555444
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSK 292 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (460)
...+...++- ... ...+-.|...+++..|..+++...+
T Consensus 178 ~~~~~~~e~d-----------lfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAP-----------LYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHH-----------HHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHH-----------HHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4433322221 111 1223345556777777776665543
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.65 E-value=6.4 Score=28.60 Aligned_cols=69 Identities=7% Similarity=-0.090 Sum_probs=40.8
Q ss_pred cCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 295 KKLSTKHYTALLKVYADHKML---SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 295 ~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
..|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+..++.+.|++++|.++.+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345666655566666665543 356666776666541112344455666677777777777777776653
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.44 E-value=21 Score=34.19 Aligned_cols=268 Identities=9% Similarity=0.024 Sum_probs=130.9
Q ss_pred HHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 012577 45 QLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGF 124 (460)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 124 (460)
++-..+.+....|.....-...+..+++.+++.....++.. + ..+...--....+....|+..+|......+-..|
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~- 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG- 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-
Confidence 44444444444444555566677888888888888876665 2 1333333345566777888888888777776665
Q ss_pred CCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHcC-----------CCCCHHH-HHHHHHHHhhcCChhHHHHHHHHHH
Q 012577 125 PVTSFACNQLLILYKRLDK---KKVADVLLLMEKEN-----------VKLTQFS-YKILIDIKGQSNDLTGMDQVVEAMK 189 (460)
Q Consensus 125 ~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~-----------~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~ 189 (460)
...+..+..++..+.+.|. +....-+..+...| ++++... ...++..+. +...+......
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-- 207 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-- 207 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc--
Confidence 3456777888888877665 23333333333332 1111110 011111111 11111111110
Q ss_pred hCCCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHhcc-C
Q 012577 190 SEGIEPDSST---QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL----LPLYAELGKADQVARIWKLCES-N 261 (460)
Q Consensus 190 ~~g~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~-~ 261 (460)
+.++... +...+.-+.+ .+.+.|...+....+... .+......+ ...+...+...++...+..... .
T Consensus 208 ---~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~ 282 (618)
T 1qsa_A 208 ---TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (618)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred ---cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC
Confidence 1222221 1112222222 366777777777654321 222222222 2222233323344444443322 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 262 PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
.+.....-.+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+..
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 23222222333344567788888877777653221 333344455666777777777777777653
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.74 E-value=17 Score=32.44 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCC-hhHHHHHHHHhc----cCCCHH--H
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKE---HRWTCRLLLPLYAELGK-ADQVARIWKLCE----SNPWLD--V 266 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~----~~~~~~--~ 266 (460)
.+...|...|.+.|+.++...++.....- +..| .......+++.+....+ .+.-.++..... ...-.. +
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888999999888888776432 1111 12345567777766433 333333333322 221111 1
Q ss_pred --HHHHHHHHHccCCHHHHHHHHHHHHhcccCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHH
Q 012577 267 --CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS-----TKHYTALLKVYADHKMLSKGKDLVKQMAES--GCHIGPLAW 337 (460)
Q Consensus 267 --~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ 337 (460)
=.-++..|...|++.+|.+++..+.+.-...| ...+..-+..|...+++.++...+...... .+.+++.+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 12577888888999999888888776422222 233555567788888888888888877542 233444443
Q ss_pred HHHHHH-----HH-cCCChhhHHHHHHHHHHhCCCC--c---CHHHHHHHHHHHHhcCCHHHHHHHHH-HH-HHcCCCcc
Q 012577 338 DALVKL-----HV-EGGEVEKADSILLKAQQQNKFK--P---MFSSYMLIMDQYAKRGDIHSTEKIFH-RM-RQVGYVAR 404 (460)
Q Consensus 338 ~~li~~-----~~-~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~-~m-~~~~~~~~ 404 (460)
. .+.. +. ..+++..|...|-+..+.+.-. | +...|..+. +. -.++..+...++. .. ... ..|+
T Consensus 180 a-~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 180 G-ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp H-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred H-HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HH-HcCCHHHHHHHhcccccccc-CCcc
Confidence 3 3332 23 6788888888887775443211 1 111232222 12 2233333333332 21 222 3566
Q ss_pred HHHHHHHHHHHHhcCC-chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 405 FKQFQTLVQAYINAKT-PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 405 ~~~~~~l~~~~~~~g~-~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
...+..|+.+|....- ....++..... .+..|......+
T Consensus 256 i~~l~~L~~a~~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~ 295 (394)
T 3txn_A 256 IDAMKSVAEASHKRSLADFQAALKEYKK-ELAEDVIVQAHL 295 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSTT-TTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcChHHHHHH
Confidence 6667777777655432 22333333322 455666544433
No 261
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=86.41 E-value=8.9 Score=33.63 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM--LSKGKDLVKQMAESGCHIG 333 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 333 (460)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 466788888888888888888888643222 23334455555555433 3456777777777665443
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.24 E-value=7.9 Score=28.15 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
-+..+-++.+...++.|++....+.+.+|.+.+|+..|.++|+.++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555556666666677777777777777777777777777766543
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.15 E-value=3.7 Score=31.19 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLE 51 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 51 (460)
.+..+...+...+++..|...|+...
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34455555667777778877777643
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.09 E-value=13 Score=29.53 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=42.1
Q ss_pred ChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 127 TSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKH 206 (460)
Q Consensus 127 ~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 206 (460)
+...-...+.++...+..++...+..+.. .++..+-...+.++.+.|+.+ +...+..+.+ .++..+-...+.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a 166 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADA 166 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHH
Confidence 44444444455555555434444433332 345445445555555555433 3333333332 3455555555555
Q ss_pred HHhCCChHHHHHHHHHHHh
Q 012577 207 YVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~ 225 (460)
+.+.+. .++...+..+.+
T Consensus 167 L~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 167 LGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHCS-HHHHHHHHHHHH
T ss_pred HHHhCc-hhHHHHHHHHHh
Confidence 555554 334444444443
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.67 E-value=6.7 Score=26.71 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-.|-. .+.|..+++..-+..+
T Consensus 24 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 777777777776653 33333333456677888888888877655 788888877643 5677778777777777
Q ss_pred HhCC
Q 012577 224 EGDN 227 (460)
Q Consensus 224 ~~~~ 227 (460)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6665
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.38 E-value=29 Score=33.15 Aligned_cols=200 Identities=12% Similarity=0.069 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhhHHHHH----HHHhcC-chHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 107 NNVKKAEEVFNRMKDKGFPVTSFACNQLLI----LYKRLD-KKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 107 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~----~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
.+.+.|...+....+.+. .+......+-. .....+ ..++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 378899999988865432 23332222222 223334 45666666665443 34444444455556678999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN 261 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (460)
.+.|+.|.... .......--+..++...|+.++|..+|+.+... .+ -|. ++ +..+.|..... .. ......
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg-~l-Aa~~Lg~~~~~-~~-~~~~~~ 374 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYP-MV-AAQRIGEEYEL-KI-DKAPQN 374 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHH-HH-HHHHTTCCCCC-CC-CCCCSC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHH-HH-HHHHcCCCCCC-CC-CCCChh
Confidence 99999887542 123333445666778889999999999988752 11 233 22 22223321100 00 000000
Q ss_pred C-CHH---HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 262 P-WLD---VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 262 ~-~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
. ... .-...+..+...|....|...+..+... . +......+.......|..+.+....
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0 000 1112344566778888888877776653 2 3333334444445566666665443
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.28 E-value=6.4 Score=26.78 Aligned_cols=77 Identities=10% Similarity=-0.016 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-.|- -.+.|..+++..-+..+
T Consensus 23 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 777777777776653 33333333456778888888888776655 78888887764 45778888888877777
Q ss_pred HhCCC
Q 012577 224 EGDNL 228 (460)
Q Consensus 224 ~~~~~ 228 (460)
..+|-
T Consensus 95 a~sg~ 99 (115)
T 2uwj_G 95 GGSSD 99 (115)
T ss_dssp HTCSS
T ss_pred HhCCC
Confidence 76653
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.06 E-value=3.7 Score=34.11 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=36.1
Q ss_pred HHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC
Q 012577 32 ANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR 91 (460)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (460)
..+.+.|++++|++....-.+.. |-+...-..++..+|-.|+++.|..-++...+..|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34556677777776665555543 44555666677777777777777776666554434
No 269
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=82.73 E-value=12 Score=27.23 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNN--VKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 127 (460)
...++.-|...|+.++|.+.++++... .....+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 455777788888888888888887641 1233445555556655432 4667777888877765433
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.69 E-value=22 Score=32.25 Aligned_cols=58 Identities=7% Similarity=-0.022 Sum_probs=25.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKL--STKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
..+...|.+.|+++.|.+.|.++......+ -...+-..+..+...+++..+...+..+
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555555555555544432111 1223334444444445555554444444
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.31 E-value=14 Score=32.40 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCC--CHHHHHHHHHHHHccCC--HHHHHHHHHHHHhcccC
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCESNP--WLDVCMAAIEAWGKLNK--VEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 296 (460)
...++.-|...|+.++|.+.++++.... ......++..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4677888888899999999998886532 12244555555555433 34566777777776554
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.00 E-value=6 Score=32.88 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=41.9
Q ss_pred HHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN 227 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (460)
....+.|++++|++....-++.. +-|...-..|+..+|-.|++++|.+-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34567788888888877777664 5677777778888888888888888777776643
No 273
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=80.38 E-value=9.6 Score=28.61 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNN--VKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 127 (460)
...++.-|...|+.++|.+.++++... .....+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456777788888888888888887641 1233445555555555332 4567777777777665433
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.51 E-value=16 Score=26.89 Aligned_cols=68 Identities=7% Similarity=-0.088 Sum_probs=39.2
Q ss_pred CcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 296 KLSTKHYTALLKVYADHKML---SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 296 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
.|+..+--.+..++.+..+. .+++.+++.+.+.+..-.....-.+..++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555555566666665543 356666666666431112333444556667777777777777766653
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.84 E-value=4.9 Score=33.68 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 012577 313 KMLSKGKDLVKQMAESGCHI 332 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~ 332 (460)
++.....++++.+.+.|..+
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCS
T ss_pred cccchHHHHHHHHHHcCCCC
Confidence 33333344444455544433
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.65 E-value=22 Score=27.99 Aligned_cols=56 Identities=2% Similarity=-0.094 Sum_probs=31.8
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
+...++.++|..|....--.--...|......+...|++++|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33456666666664433112334455666666666666666666666666665555
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.80 E-value=41 Score=30.44 Aligned_cols=59 Identities=15% Similarity=0.011 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLK--EHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++..+...|.+.|++++|.+.|.++...-.. --...+-.+++.+...+++..+.....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4445556666666666666666665542111 1123333444444445555544444443
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.35 E-value=46 Score=28.51 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhccCCCHHHHHHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL---GKADQVARIWKLCESNPWLDVCMAAI 271 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~li 271 (460)
-++.....+...|.+.|++.+|..-|- .|-.-+...+..++.-+... |...++--.. ...+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~------------~RaV 195 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF------------SRLV 195 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHH------------HHHH
Confidence 366677777778888888877776553 11111233444444333333 3332221111 1123
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 012577 272 EAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~ 291 (460)
-.|...++...|..+|+...
T Consensus 196 L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 33445677777777777654
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.23 E-value=36 Score=26.80 Aligned_cols=108 Identities=13% Similarity=-0.012 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
++..+-...+.++.+.++.+. ...+..+.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 444444445555555555332 233333332 345555555555555555432 3333333332 23444444555
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 012577 240 PLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGK 276 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 276 (460)
.++.+.+.. .+...+..+..+++...-...+.++.+
T Consensus 165 ~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 165 DALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 555555553 333333333333444433333444333
No 280
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=66.73 E-value=40 Score=26.07 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh---hhHHHHHHHHhcCc--
Q 012577 69 LIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSF---ACNQLLILYKRLDK-- 143 (460)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~-- 143 (460)
..++.|+++....++..-... .+...-.+.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++.....
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYED-KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 345678888777776654321 111111244555566777776677777888888766543 23344433333222
Q ss_pred hHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcCCh-hHHHHHHHHHHh-CCCCCC
Q 012577 144 KKVADVLLLMEKENVKLTQFS---YKILIDIKGQSNDL-TGMDQVVEAMKS-EGIEPD 196 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~-~~a~~~~~~m~~-~g~~~~ 196 (460)
....++.+.+.+.|..++... .++.+...+..+.. ..-..+++.+.+ .|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 334566777777776665432 11222222333322 234456666666 555443
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.36 E-value=20 Score=29.68 Aligned_cols=52 Identities=10% Similarity=-0.059 Sum_probs=26.8
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCC---hhhhHHHHHHHHHhhCHHHHHHHHHhc
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFI---ERDYASCLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (460)
.+....+.|+.+....++ +.+ ..++ ...-.+.+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHH----HcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 344555666654443333 333 2222 122234566666778877777776653
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.11 E-value=49 Score=26.08 Aligned_cols=51 Identities=6% Similarity=0.037 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcccC---CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 012577 76 LQKAESYIQKIPES---FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126 (460)
Q Consensus 76 ~~~a~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 126 (460)
..++..+|..|... ..-+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444454444332 1223344444445555555555555555554444333
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.84 E-value=37 Score=24.53 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM--LSKGKDLVKQMAESGCH 331 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 331 (460)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 355677777777777777777776532221 22334444455554432 34566667666665543
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=64.16 E-value=81 Score=28.25 Aligned_cols=205 Identities=8% Similarity=0.001 Sum_probs=93.7
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCCh--hhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcC
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIE--RDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAG 106 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~ 106 (460)
.+...+..|+.+-+..++ +.+ ..++. ......+...+..|+.+-+..+++.-... ..+..-. +.+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTT-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHC
Confidence 355556667665444444 333 23322 12334566677888988888888764332 1222222 233344556
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---hhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCChhH
Q 012577 107 NNVKKAEEVFNRMKDKGFPVT---SFACNQLLILYKRLDKKKVADVLLLMEKENVKLT---QFSYKILIDIKGQSNDLTG 180 (460)
Q Consensus 107 ~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~ 180 (460)
|+.+-+.-+ .+.|..|+ ..-.+.+. ..+..|+.+ ++..+.+.+..++ ...++ .+...+..|+.+-
T Consensus 91 g~~~~v~~L----l~~ga~~~~~~~~g~t~L~-~A~~~g~~~---~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~ 161 (437)
T 1n11_A 91 GHTNMVKLL----LENNANPNLATTAGHTPLH-IAAREGHVE---TVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRV 161 (437)
T ss_dssp TCHHHHHHH----HHHTCCTTCCCTTCCCHHH-HHHHHTCHH---HHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHH
T ss_pred CCHHHHHHH----HhCCCCCCCCCCCCCcHHH-HHHHcCCHH---HHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHH
Confidence 776544444 34454433 22233333 334445422 2223333333222 11122 3344456677654
Q ss_pred HHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHH
Q 012577 181 MDQVVEAMKSEGIEPDSST--QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWT--CRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
+. .+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 162 v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 162 AE----LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HH----HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 43 4444444433210 11223344566666533 34444444332211 1123344556777777777665
Q ss_pred H
Q 012577 257 L 257 (460)
Q Consensus 257 ~ 257 (460)
.
T Consensus 234 ~ 234 (437)
T 1n11_A 234 Y 234 (437)
T ss_dssp T
T ss_pred c
Confidence 3
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.04 E-value=80 Score=28.13 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHH-
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEP---DSSTQAILAKHYVSGG-RKEKAEAMLKEMEGDNLKEHRWTC- 235 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 235 (460)
......|...|.+.|+.++..+++.....- +..| .......++..+.... ..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345667889999999999999999876532 1112 2445677888887643 444445555544431111 11222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHhcc---C-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc--ccCcCHH
Q 012577 236 -----RLLLPLYAELGKADQVARIWKLCES---N-PW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKT--WKKLSTK 300 (460)
Q Consensus 236 -----~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~ 300 (460)
..++..|...|++.+|..++..+.. . .+ ...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2678999999999999888877654 1 11 224666788899999999999999887643 2324444
Q ss_pred HHHHH----HHHHH-hcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHcCCChhhHHHHHH-HHHHhCCCCc
Q 012577 301 HYTAL----LKVYA-DHKMLSKGKDLVKQMAESGCHIG------PLAWDALVKLHVEGGEVEKADSILL-KAQQQNKFKP 368 (460)
Q Consensus 301 ~~~~l----i~~~~-~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~ 368 (460)
....+ ...+. ..+++..|...|-+..+.=-... ...|..+.. .-.++..+...++. ...... ..|
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a--Ll~~~r~el~~~l~~~~~~~~-~~p 254 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK--IMLGQSDDVNQLVSGKLAITY-SGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--HHTTCGGGHHHHHHSHHHHTT-CSH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHcCCHHHHHHHhcccccccc-CCc
Confidence 33322 33456 78999999888777653200111 112322222 22344444444432 221222 346
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 012577 369 MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFK 406 (460)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 406 (460)
....+..++.+| ..+++.+...+++.... .+..|..
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 666566666664 45677777777766543 2445554
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.75 E-value=17 Score=29.17 Aligned_cols=16 Identities=0% Similarity=0.121 Sum_probs=8.0
Q ss_pred HHHhhCHHHHHHHHHh
Q 012577 70 IAKLRGLQKAESYIQK 85 (460)
Q Consensus 70 ~~~~~~~~~a~~~~~~ 85 (460)
.++.|+++....+++.
T Consensus 16 A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 16 ATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHc
Confidence 3445555555555543
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.53 E-value=32 Score=25.73 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=34.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM--LSKGKDLVKQMAESGC 330 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~ 330 (460)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 355666777777777777777776532221 22333444445544322 3445566666665553
No 288
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.08 E-value=51 Score=25.58 Aligned_cols=82 Identities=12% Similarity=-0.054 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHH
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTL 99 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 99 (460)
...++..-...+..+.+.+.. .+...+-.+.. .++.......+..++..+..+....+.+.+.. ++..+-...
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d--~~~~vr~~a 96 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKALKD--EDGWVRQSA 96 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHH
Confidence 334555555555555555542 22222222222 12444444455555555544333333333322 343333344
Q ss_pred HHHHHcCCC
Q 012577 100 LANCVAGNN 108 (460)
Q Consensus 100 l~~~~~~~~ 108 (460)
+.++.+.++
T Consensus 97 ~~aL~~~~~ 105 (201)
T 3ltj_A 97 AVALGQIGD 105 (201)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCc
Confidence 444444343
No 289
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=62.82 E-value=27 Score=23.74 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=36.1
Q ss_pred CCchHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhcccchhHHHHHHHHHh
Q 012577 4 PDISIHSTLTKYAEEGNDLSRAEIALAMAN---LRTRRMYGKALQLSEWLET 52 (460)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~ 52 (460)
+-+++...|..|......|.+.++..+... +...++.+++..+++++..
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~r 61 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKR 61 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 446688899999998888888777666555 4467788888877766543
No 290
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=62.74 E-value=34 Score=24.25 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 012577 280 VEEAEAVFKRMS 291 (460)
Q Consensus 280 ~~~a~~~~~~m~ 291 (460)
+..|+.-+++..
T Consensus 4 ~~~al~~L~e~~ 15 (119)
T 1wty_A 4 LARAVERLKAAL 15 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.29 E-value=46 Score=24.84 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 351 EKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
+++.++|..|....--.--...|......+-..|++++|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34666776665433123334566667777777777777777777777766666
No 292
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=62.14 E-value=73 Score=27.27 Aligned_cols=54 Identities=9% Similarity=-0.094 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhcccCCCCh---hhhHHHHHHHHHhhCHHHHHHHHHhc
Q 012577 28 ALAMANLRTRRMYGKALQLSEWLETNKKLDFIE---RDYASCLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 28 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (460)
...+....+.|+.+....+++ .+ ..++. ..-.+-+...+..|+.+-+.-+++.-
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~G-advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g 82 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 82 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CC-CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 344555667777765555543 33 33322 11123455556778887777777653
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=61.04 E-value=47 Score=24.49 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
+..+.+.+.+.|..+++.- ..++..+...+..-.|.++++.+.+.+ ...+..|....+..+...|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCE
Confidence 4455566777888888744 345666666667778999999987765 345666666677777766643
No 294
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=59.92 E-value=14 Score=21.40 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=31.5
Q ss_pred CCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHH
Q 012577 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLS 47 (460)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 47 (460)
+++.+...+..|..-|+.-....+..++.. +.|+...|++++
T Consensus 6 ~D~rl~~al~qMl~MGF~negGWLt~LL~~--k~gDI~~aLD~l 47 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDEGGWLTRLLQT--KNYDIGAALDTI 47 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCTTSHHHHHHHH--TTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHHcCCCccccHHHHHHHH--ccCCHHHHHHHh
Confidence 455577888888888888777777777765 677888887765
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.92 E-value=61 Score=25.12 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=58.5
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
+.......+..++..+..+....+.+.+.. ++...-...+.++.+.+..+ +...+..+... ++...-...+.++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL 100 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQSAAVAL 100 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 333444444444444443333333333332 44444444444444444432 22333333322 3444445555555
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012577 139 KRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212 (460)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 212 (460)
...+..++...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|.
T Consensus 101 ~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 101 GQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHhCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 55555434433333332 344444444455555544432 2222333322 2344444444444444443
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.55 E-value=35 Score=26.45 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=7.0
Q ss_pred HHhhCHHHHHHHHHh
Q 012577 71 AKLRGLQKAESYIQK 85 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~ 85 (460)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 344455554444443
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.41 E-value=45 Score=27.18 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSE--GIEP----DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~--g~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 366778888888888888776532 2221 111112222222222223333344444422 3344555556666
Q ss_pred HHhcCChhHHHHHHH
Q 012577 242 YAELGKADQVARIWK 256 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~ 256 (460)
+.+.|+.++|.++|=
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 666777777766653
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.25 E-value=40 Score=25.50 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=17.4
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 326 AESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+.|.+++.. -..++..+...++.-.|.++++.+.+
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHH
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 3445555432 23344444444555556666555543
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.94 E-value=59 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 123 (460)
.|......+-..|++++|.++|+.-++.+
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444443
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.40 E-value=29 Score=29.13 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=5.7
Q ss_pred HHHHHHcCCCCCH
Q 012577 322 VKQMAESGCHIGP 334 (460)
Q Consensus 322 ~~~~~~~~~~~~~ 334 (460)
.+.+.+.|..++.
T Consensus 211 v~~Ll~~gad~~~ 223 (285)
T 3kea_A 211 LQALFKYDINIYS 223 (285)
T ss_dssp HHHHTTSCBCSTT
T ss_pred HHHHHHcCCCCCC
Confidence 3334444544443
No 301
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=55.75 E-value=87 Score=25.89 Aligned_cols=124 Identities=11% Similarity=-0.017 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHH
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEGDNLKEHRWTCRL 237 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (460)
.++..+-...+.++...|+.+ +...+..+.. .++...-...+.++...+ ....+...+..+... ++..+-..
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~ 211 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIE 211 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHH
Confidence 456666556666666666533 3334433433 345544444555555444 234455555555432 35555566
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 012577 238 LLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (460)
.+.++.+.|+......+...+. ++++ -...+.++.+.|.. .+...+..+.+.
T Consensus 212 A~~aL~~~~~~~~~~~L~~~l~-d~~v--r~~a~~aL~~i~~~-~~~~~L~~~l~~ 263 (280)
T 1oyz_A 212 AIIGLSYRKDKRVLSVLCDELK-KNTV--YDDIIEAAGELGDK-TLLPVLDTMLYK 263 (280)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHT-SSSC--CHHHHHHHHHHCCG-GGHHHHHHHHTT
T ss_pred HHHHHHHhCCHhhHHHHHHHhc-CccH--HHHHHHHHHhcCch-hhhHHHHHHHhc
Confidence 6777777776555555554443 3332 23345555666653 555556555543
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.49 E-value=57 Score=27.86 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRM 119 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m 119 (460)
+.++.-|...|+.++|.+.++++
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 34444555555555555555554
No 303
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=55.45 E-value=45 Score=22.53 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHH-----HhCCCCcCHHHHHHH
Q 012577 387 HSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRM-----RADNVFPNKALAAQV 444 (460)
Q Consensus 387 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m-----~~~~~~p~~~~~~~l 444 (460)
-.|.++.++....|+.|+..+..-++.-|...+-.+..+..+. ...|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 4566777777788888888888888888887776444433222 245788887777666
No 304
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.33 E-value=52 Score=25.42 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=44.9
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH---HHHHHHHHHHh-cCCHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK---HYTALLKVYAD-HKMLSKG 318 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~-~g~~~~a 318 (460)
++.|+.+....++..-....+...-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+....
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~ 93 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhH
Confidence 3456666655555432111110111234444555666665566666667776655442 22223222222 2334445
Q ss_pred HHHHHHHHHcCCCCCH
Q 012577 319 KDLVKQMAESGCHIGP 334 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (460)
.++.+.+.+.|..++.
T Consensus 94 ~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 94 TELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHCCCCCCc
Confidence 6677777777766543
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.11 E-value=66 Score=24.37 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 353 ADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
+.++|..|....--.--...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 455565554432122334556666666666677777777777666666555
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.69 E-value=80 Score=25.37 Aligned_cols=53 Identities=6% Similarity=0.122 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 351 EKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
+.+.++|..|....--.--...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566666665443223334566667777777777777777777777766666
No 307
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=52.39 E-value=35 Score=24.45 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhcccchhHHHHHHHHHh
Q 012577 6 ISIHSTLTKYAEEGNDLSRAEIALAMAN---LRTRRMYGKALQLSEWLET 52 (460)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~ 52 (460)
.++..+|..|......|.+.++..+... +...++.+++..+++++..
T Consensus 39 ~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 39 NDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 4566788888777666776666555544 3456777777776665543
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.85 E-value=92 Score=24.74 Aligned_cols=54 Identities=6% Similarity=-0.097 Sum_probs=26.5
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCCh--hhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIE--RDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
+...+..|+.+....+++.+...+ ..++. ..-.+.+...+..|+.+-+..+++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 444555666665555555444433 22221 1122344555566666666655554
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.13 E-value=44 Score=25.79 Aligned_cols=82 Identities=9% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCCh--hhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCC
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIE--RDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGN 107 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~ 107 (460)
+...+..|+.+....++. .++..++. ..-.+.+...+..|+.+-+..+++.-... .++..-++. +...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQ----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP-YLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHT----CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcC
Confidence 344456666665555553 22212211 12223555666788888777777763331 122222222 33344556
Q ss_pred CHHHHHHHHH
Q 012577 108 NVKKAEEVFN 117 (460)
Q Consensus 108 ~~~~a~~~~~ 117 (460)
+.+-+..+++
T Consensus 84 ~~~~~~~Ll~ 93 (201)
T 3hra_A 84 RTEILAYMLK 93 (201)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 6655554443
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.12 E-value=86 Score=23.64 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhc--ccCCCChhhhHHHHHHHHHhhCH
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETN--KKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
.+.+.+.+.|..+++. -..++..+...+..-.|.++++.+... + ...+..|.-..+..+...|-+
T Consensus 19 ~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 3444555668888774 455667777777778888888888776 4 345666666667777776643
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=47.73 E-value=22 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 351 EKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
++|.+.|-+|++..++.|+ -+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHh
Confidence 4555555555555555444 3455544444
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.22 E-value=32 Score=27.53 Aligned_cols=177 Identities=10% Similarity=0.032 Sum_probs=76.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHhcccCC-CchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhhHHHHHHHHh
Q 012577 65 SCLDLIAKLRGLQKAESYIQKIPESF-RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS---FACNQLLILYKR 140 (460)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~ 140 (460)
..+...+..|+.+-+..+++.-.... .+...-.+.+...+..|+.+- ++.+.+.|..++. ...+.+ ...+.
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l-~~A~~ 118 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM----VVQLMKYGADPSLIDGEGCSCI-HLAAQ 118 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHH-HHHHH
Confidence 45666677788877777777644321 111111122333444555543 3444455544432 222333 33344
Q ss_pred cCchHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhCCChH
Q 012577 141 LDKKKVADVLLLMEKENVKLTQ---FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSS---TQAILAKHYVSGGRKE 214 (460)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~l~~~~~~~~~~~ 214 (460)
.+..+ +++.+.+.|..++. ...+.+..+..+ +......+++ .+.|..++.. .-.+.+...+..|+.+
T Consensus 119 ~~~~~---~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L---~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 191 (240)
T 3eu9_A 119 FGHTS---IVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLL---LTFNVSVNLGDKYHKNTALHWAVLAGNTT 191 (240)
T ss_dssp TTCHH---HHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHH---HHTTCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred cCHHH---HHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHHH---HhcCCCcchhhccCCCcHHHHHHHcCCHH
Confidence 45433 33344444444332 222333333333 3333333333 3333222211 1112344455667766
Q ss_pred HHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHH
Q 012577 215 KAEAMLKEMEGDNLKEHRWT--CRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
-+..+++. |..++... -.+-+....+.|+.+-+..+++.
T Consensus 192 ~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 192 VISLLLEA----GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 54444433 33332110 01234445666777766666654
No 313
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=46.69 E-value=93 Score=23.59 Aligned_cols=25 Identities=0% Similarity=0.013 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHhccc
Q 012577 64 ASCLDLIAKLRGLQKAESYIQKIPE 88 (460)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (460)
..++.-|...++.++|...++++..
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 3456666666677777777766653
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.97 E-value=86 Score=23.02 Aligned_cols=41 Identities=2% Similarity=-0.014 Sum_probs=16.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
.+...+..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 30 ~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 30 YLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333334444444444444333333333333334444443
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.71 E-value=81 Score=23.37 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
.+.+.+.+.|..+++. -..++..+...+..-.|.++++.+.+.+ ...+..|....+..+...|-+
T Consensus 13 ~~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCcE
Confidence 3444556667777664 3445666666667778889998887765 345666666667777666643
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.33 E-value=1.1e+02 Score=24.25 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=10.7
Q ss_pred HHHHcCCChhhHHHHHHHHH
Q 012577 342 KLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~ 361 (460)
..|.+.|.+++|.+++++..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHhcchHHHHHHHHHHh
Confidence 34555555555555555544
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.07 E-value=77 Score=23.31 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=18.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 26 ~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 26 EAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3333333 4455555555555443334444333444444444
No 318
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.03 E-value=94 Score=24.60 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=13.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCC
Q 012577 205 KHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 344556666666555565555554
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.01 E-value=71 Score=23.70 Aligned_cols=64 Identities=9% Similarity=-0.039 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcc-cchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH
Q 012577 11 TLTKYAEEGNDLSRAEIALAMANLRTRR-MYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
..+.+.+.|..+++.-. .++..+...+ ..-.|.++++.+...+ ...+..|....+..+...|-+
T Consensus 4 ~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 4 NNQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 34556678888887543 4566666665 6778999999998775 345666666677777777654
No 320
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.88 E-value=58 Score=29.23 Aligned_cols=207 Identities=14% Similarity=0.086 Sum_probs=96.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---hhhhHHHHHHHHh
Q 012577 65 SCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT---SFACNQLLILYKR 140 (460)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~ 140 (460)
+.+...+..|+.+-+..+++.-... ..+... .+.+...+..|+.+-+.-+++ .|..++ ..-.+. +...+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~-L~~A~~ 89 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTP-LHCAAR 89 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCC-CCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCH-HHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCH-HHHHHH
Confidence 3566667889999988888864331 112111 233445556677765555554 344332 222333 344445
Q ss_pred cCchHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 141 LDKKKVADVLLLMEKENVKLTQF---SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
.|+.+ +++.+.+.|..|+.. ..+ .+...+..|+.+.+..+++.-.... ..+..-+ +.+...+..|+.+-+.
T Consensus 90 ~g~~~---~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~-t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 90 IGHTN---MVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEKEASQA-CMTKKGF-TPLHVAAKYGKVRVAE 163 (437)
T ss_dssp HTCHH---HHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSC-CHHHHHHHTTCHHHHH
T ss_pred CCCHH---HHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCC-CHHHHHHHcCCHHHHH
Confidence 55533 333444445444322 122 3444556777766655554321111 1111111 2334456677776554
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 218 AMLKEMEGDNLKEHRWT--CRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
.++ +.|..++... -...+...+..|+.+-+..+++.-.. .++...+ +.+...+..|+.+-+..+++
T Consensus 164 ~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 164 LLL----ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HHH----HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCC-CHHHHHHHTTCHHHHHHHHH
T ss_pred HHH----hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHH
Confidence 444 4444332210 01223444567777666555543211 1111111 22334455666655554443
No 321
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.52 E-value=1.3e+02 Score=24.40 Aligned_cols=94 Identities=15% Similarity=0.016 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhccc-CCC----ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKK-LDF----IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLL 100 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll 100 (460)
....-+..+....++++|+++++.....-. .+. ........+..-.....-.-+..+.+.+.. ..+...-...+
T Consensus 20 ~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v 98 (235)
T 2d2s_A 20 EGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 344556777888899999999877664320 111 111222233333333444444455555533 34555566667
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 012577 101 ANCVAGNNVKKAEEVFNRMK 120 (460)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~ 120 (460)
..+.+.|+.++|.++|-+..
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 77888888888888886654
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.90 E-value=2e+02 Score=29.31 Aligned_cols=108 Identities=9% Similarity=-0.018 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc----------------
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP---------------- 368 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 368 (460)
++..+...|.++-|.++... ++.++..--.+..+|...|++++|.+.|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccchhhhhhccC
Confidence 55666677777655543322 344554444577778889999999999987632 2211
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcC
Q 012577 369 -------MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF----KQFQTLVQAYINAK 419 (460)
Q Consensus 369 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g 419 (460)
...-|..++..+-+.+-++.+.++-+...+.--+.|. ..|+.++++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124667777777788888888877777754212222 24666666665543
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.37 E-value=1e+02 Score=22.70 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=42.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH
Q 012577 12 LTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 12 l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
.+.+.+.|..+++.- ..++..+...+ .-.|.++++.+...+ ...+..|.-..+..+...|-+
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTA-SGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcE
Confidence 344556788888754 44556666666 678999999988775 345666666677777776653
No 324
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.23 E-value=66 Score=20.61 Aligned_cols=63 Identities=11% Similarity=-0.048 Sum_probs=42.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcc-cchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH
Q 012577 12 LTKYAEEGNDLSRAEIALAMANLRTRR-MYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 12 l~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
...+.+.|..+++.- ..++..+...+ ..-.+.++++.+.+.+ ...+..+....+..+.+.|-+
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~-~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCCe
Confidence 445666788888755 45666676654 5667888888887764 345666766677777766643
No 325
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.33 E-value=97 Score=24.62 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=8.6
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 012577 104 VAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g 123 (460)
++.|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 33444444444444443333
No 326
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=40.55 E-value=1.2e+02 Score=23.22 Aligned_cols=50 Identities=4% Similarity=0.014 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
+....++..+.+.|..-|..--..++....+.|.+ .-..+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 34445555555555553333333344444433322 224455555666653
No 327
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.54 E-value=1.3e+02 Score=23.64 Aligned_cols=179 Identities=12% Similarity=0.016 Sum_probs=90.3
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCCh--hhhHHHHHHHHHhhCHHHHHHHHHhcccC------CCchhHHHHHHHH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIE--RDYASCLDLIAKLRGLQKAESYIQKIPES------FRGEVVYRTLLAN 102 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ll~~ 102 (460)
+...++.|+.+....++ +..+..++. ..-.+.+...+..|+.+-+..+++.-... ..+..-++ .+..
T Consensus 7 L~~A~~~g~~~~v~~Ll----~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~ 81 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLL----KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHI 81 (232)
T ss_dssp HHHHHHTTCHHHHHHHH----TTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHH
T ss_pred HHHHHHcCCHHHHHHHH----HhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHH
Confidence 34455566654444443 331122222 12234566667788988888888764431 11112223 3334
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChh----------------hhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHH--
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSF----------------ACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFS-- 164 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~----------------~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 164 (460)
.+..|+.+-+ +.+.+.|..++.. -.+.+ ...+..|+. ++.+.+.+.|..++...
T Consensus 82 A~~~~~~~~v----~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~---~~v~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 82 AVINQNVNLV----RALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSE---EIVRLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCH---HHHHHHHHTTCCTTCCCTT
T ss_pred HHHcCCHHHH----HHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCH---HHHHHHHHCCCCCCCCCCC
Confidence 4556776544 4444556554432 23333 333444543 34444555665554321
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC---------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD---------SSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
-.+-+...+..|+.+.+..+++.+.+.|..++ ..-.+ -+...++.|+.+-+.-+++.-
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcC
Confidence 12345556678888888888888888764332 22222 233344556665555555443
No 328
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=40.40 E-value=1.2e+02 Score=22.90 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
..+..++..+-..| -...+|.-++..+.+...+-.....|+.+
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 34445555553322 23356666677666666666666666543
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.92 E-value=1.1e+02 Score=22.14 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=42.9
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcc-cchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH
Q 012577 13 TKYAEEGNDLSRAEIALAMANLRTRR-MYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL 76 (460)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (460)
+.+.+.|..+++.- ..++..+...+ ..-.|.++++.+.+.+ ...+..|....+..+...|-+
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 44666788888754 34566666665 6778999999998875 345666666677777776654
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.77 E-value=90 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=16.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~ 122 (460)
+-.|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34567777777777777777654
No 331
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=38.58 E-value=55 Score=20.61 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCC-chhhhHHHHHhCCCCcCHHHHHHHHHHHHHhhhhhhhhc
Q 012577 407 QFQTLVQAYINAKT-PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELL 459 (460)
Q Consensus 407 ~~~~l~~~~~~~g~-~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~l 459 (460)
+|-.|+-....... .+..+-...++.|+..+..-...+ ++.++..++.+++
T Consensus 5 vyA~Lll~~~g~~~~ta~~I~~il~aaGvevd~~~~~~~--~~aL~gk~i~elI 56 (70)
T 2lbf_B 5 VASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKV--ISELNGKNIEDVI 56 (70)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHTTTCCCCTTHHHHH--HHHHSSCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHcCCCccHHHHHHH--HHHHcCCCHHHHH
Confidence 44555544443323 466677777888888888777777 6666666666654
No 332
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.51 E-value=1.3e+02 Score=23.02 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCC--CC---------------HHHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIE--PD---------------SSTQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~--~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
+|-+.+++..|+..++.+....+. || ...|+.+...|.+.|+.++|+..+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 455677777777777777754333 22 12344444555555666666555543
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.31 E-value=3.4e+02 Score=27.64 Aligned_cols=46 Identities=7% Similarity=-0.114 Sum_probs=21.7
Q ss_pred hhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhc
Q 012577 130 ACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ----FSYKILIDIKGQS 175 (460)
Q Consensus 130 ~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 175 (460)
-|..++..+.+.+. +.+.++-+...+.--.-|. ..|+.+.++.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 45556666666665 4444444444433111122 2455555555543
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.53 E-value=2.1e+02 Score=24.74 Aligned_cols=63 Identities=8% Similarity=0.093 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGN-NVKKAEEVFNRMKDKGFP 125 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~ 125 (460)
...++.-|...|+.++|.+.++++... .....+...+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 445777788888888888888888652 112223333333332211 234556666777665543
No 335
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.40 E-value=2.7e+02 Score=25.89 Aligned_cols=65 Identities=6% Similarity=-0.019 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCC-CCCCH--HHH-HHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEG-IEPDS--STQ-AILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
...+|.+++.|...+.++.|..+..+..--- ..++. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3468889999999999999999999875210 01111 222 33556677889999999999888765
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.24 E-value=1.3e+02 Score=22.24 Aligned_cols=60 Identities=8% Similarity=0.035 Sum_probs=28.5
Q ss_pred HHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 012577 290 MSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV 350 (460)
Q Consensus 290 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (460)
+.+.|.+++ ..-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344454432 223334444444444555666666665554444555555555555555543
No 337
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=35.24 E-value=1.5e+02 Score=24.17 Aligned_cols=143 Identities=8% Similarity=0.045 Sum_probs=75.0
Q ss_pred HHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcccc-hhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHH
Q 012577 8 IHSTLTKYAEE--GNDLSRAEIALAMANLRTRRMY-GKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQ 84 (460)
Q Consensus 8 ~~~~l~~~~~~--~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (460)
+..++..+... ...++...+..++..+...+.. ..+..+|+.+-..+.-..+..-+..++..+......+....+|+
T Consensus 93 i~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~ 172 (256)
T 2jul_A 93 LQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFN 172 (256)
T ss_dssp HHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHH
Confidence 33444444332 4457888888888877533332 34566777665543223444445545544443334556677777
Q ss_pred hcccCCC---chhHHHHHHHHHH-cCC-----------CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHH
Q 012577 85 KIPESFR---GEVVYRTLLANCV-AGN-----------NVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVAD 148 (460)
Q Consensus 85 ~~~~~~~---~~~~~~~ll~~~~-~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~ 148 (460)
.+-.... +..-+..++..+. ..| .-+.+..+|..+-..| ....++.-++..+.+... .++..
T Consensus 173 ~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~ 250 (256)
T 2jul_A 173 LYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQ 250 (256)
T ss_dssp HTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHH
T ss_pred HhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHH
Confidence 7654322 3333444443332 113 2355666666653332 124567777777766555 55555
Q ss_pred HHHH
Q 012577 149 VLLL 152 (460)
Q Consensus 149 ~~~~ 152 (460)
.|+.
T Consensus 251 ~~d~ 254 (256)
T 2jul_A 251 LFEN 254 (256)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 5544
No 338
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.24 E-value=63 Score=26.31 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=30.5
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChh-------hhHHHHHHHH--HhhCHHHHHHHHHh
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIER-------DYASCLDLIA--KLRGLQKAESYIQK 85 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~ 85 (460)
.+...++.|+.+....+++.+...+ ..++.. -.+.+..+.. +.|+.+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3455667788888777777666654 233322 2233333221 45776666666665
No 339
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.63 E-value=2e+02 Score=23.84 Aligned_cols=20 Identities=0% Similarity=-0.110 Sum_probs=12.5
Q ss_pred HHHHHHHhhCHHHHHHHHHh
Q 012577 66 CLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~ 85 (460)
.+...+..|+.+-+..+++.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhC
Confidence 44455566777776666665
No 340
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.63 E-value=55 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=10.0
Q ss_pred HHHHHHHhhCHHHHHHHHHh
Q 012577 66 CLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~ 85 (460)
.+...+..|+.+.+..+++.
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHc
Confidence 34444455555555555544
No 341
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=33.84 E-value=48 Score=24.54 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
+.++.-+++...+.|-++.. +.|..|..
T Consensus 77 ~~s~rd~~r~a~~~GlI~d~-~~w~~m~~ 104 (146)
T 1jog_A 77 AYGFKDILREALRFGLIGDM-SKWVAYRD 104 (146)
T ss_dssp SCCHHHHHHHHHHTTSCSCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCcH-HHHHHHHH
Confidence 44555555555555555444 33334433
No 342
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.42 E-value=86 Score=19.35 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
.++-++..+++..-+++++-.+.++.+.| ..+..+|---++..++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34555666666666677777777777666 45555555555555543
No 343
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.02 E-value=1.4e+02 Score=21.57 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=16.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHHHH
Q 012577 325 MAESGCHIGPLAWDALVKLHVEGG-EVEKADSILLKAQQ 362 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 362 (460)
+.+.|.+++..=. .++..+...+ ..-.|.++++.+.+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~ 46 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALME 46 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHH
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 3445555443322 2333333333 44555555555543
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.92 E-value=1.6e+02 Score=22.24 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHcCCChhhHHHHHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGCHI--GPLAWDALVK-L-----HVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 362 (460)
|++-+|-++++..-...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555554432223 2334444444 1 1124555555555555433
No 345
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.88 E-value=2e+02 Score=23.53 Aligned_cols=149 Identities=7% Similarity=-0.070 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHh
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG-KADQVARIWKLC 258 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 258 (460)
.+...+..+.. .++..+-...+.++...++.+ +...+..+... ++..+-...+.++...+ ....+...+..+
T Consensus 128 ~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~ 200 (280)
T 1oyz_A 128 KIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAININKYDNSDIRDCFVEM 200 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 34444444433 466666667777777777643 44444455432 45555555566666655 234455555555
Q ss_pred ccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012577 259 ESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338 (460)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (460)
..+++...-...+.++.+.|+......+...+.. ++ .-...+.++.+.|.. .+...+..+.+.. ++.....
T Consensus 201 l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~~~--~~~~~~~ 271 (280)
T 1oyz_A 201 LQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGDK-TLLPVLDTMLYKF--DDNEIIT 271 (280)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCCG-GGHHHHHHHHTTS--SCCHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCch-hhhHHHHHHHhcC--CCcHHHH
Confidence 5667766666777777777765444444444332 23 223446666677763 5666666666542 3444545
Q ss_pred HHHHHH
Q 012577 339 ALVKLH 344 (460)
Q Consensus 339 ~li~~~ 344 (460)
..+...
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 346
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=32.53 E-value=1.6e+02 Score=22.11 Aligned_cols=145 Identities=8% Similarity=0.042 Sum_probs=77.9
Q ss_pred CchHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhc-ccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHH
Q 012577 5 DISIHSTLTKYAE--EGNDLSRAEIALAMANLRTR-RMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAES 81 (460)
Q Consensus 5 ~~~~~~~l~~~~~--~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (460)
...+..+...+.. ....++...+..++..+... ........+|+.+-..+.-..+..-+..++.........+....
T Consensus 17 ~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~ 96 (183)
T 1s6c_A 17 KRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRW 96 (183)
T ss_dssp HHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHH
Confidence 3344555555544 34568899999888887644 33445667777776554223454455555554444444556677
Q ss_pred HHHhcccCCC---chhHHHHHHHHHH-cCCC-----------HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hH
Q 012577 82 YIQKIPESFR---GEVVYRTLLANCV-AGNN-----------VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KK 145 (460)
Q Consensus 82 ~~~~~~~~~~---~~~~~~~ll~~~~-~~~~-----------~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~ 145 (460)
+|..+-.... +..-+..++.... ..|. .+.+..+|+.+-..| -...+|.-++..+.+... ..
T Consensus 97 ~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~ 174 (183)
T 1s6c_A 97 TFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMR 174 (183)
T ss_dssp HHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHH
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHH
Confidence 7777654322 3333333333321 1132 266777777764432 134567777666655444 44
Q ss_pred HHHHHH
Q 012577 146 VADVLL 151 (460)
Q Consensus 146 a~~~~~ 151 (460)
....|+
T Consensus 175 ~l~~~d 180 (183)
T 1s6c_A 175 SLQLFQ 180 (183)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 444444
No 347
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.37 E-value=1.8e+02 Score=22.35 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHH-HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 012577 164 SYKILID-IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK 229 (460)
Q Consensus 164 ~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (460)
-|..|+. .+.-.|.+..++-++...- .-+..-|..| +|-+..++.+|+..++.+....+.
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444433 2344677777766554221 1222233333 678899999999999999966554
No 348
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.47 E-value=1.3e+02 Score=23.89 Aligned_cols=22 Identities=18% Similarity=0.011 Sum_probs=14.6
Q ss_pred HHHHHHHHhhCHHHHHHHHHhc
Q 012577 65 SCLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~ 86 (460)
..+...+..|+.+-+..+++.-
T Consensus 46 t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 46 TPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTT
T ss_pred CHHHHHHHhCCHHHHHHHHhCC
Confidence 3555566778887777777653
No 349
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.00 E-value=1.7e+02 Score=21.62 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 33444444444444433344444444444444443
No 350
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.80 E-value=2.2e+02 Score=22.88 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCCCCh-hhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH
Q 012577 110 KKAEEVFNRMKDKGFPVTS-FACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ 162 (460)
Q Consensus 110 ~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~ 162 (460)
+.+.++|..|...|+-... ..|...-..+...|+ .+|..+|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4666788888877765443 344455556666676 8888888887777666643
No 351
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.13 E-value=1.1e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=21.0
Q ss_pred CHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHH
Q 012577 75 GLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKA 112 (460)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 112 (460)
+.+.|.++++.++. +...+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~--rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLET--RGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTT--SCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHH--cChHHHHHHHHHHHHcCcHHHH
Confidence 45666666666665 4445566666666555554444
No 352
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.10 E-value=3.3e+02 Score=24.83 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=64.5
Q ss_pred CChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 246 GKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
.+.+-|.++-.+..-.+....|..-.+.+...|++++|-++-..... |+--+..|.+.+-..=...|+..-.+.+|.-+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~L 421 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGIL 421 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 34444444444333333333333334455556666666665544433 23335555544444444445555566666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 326 AESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
.+.| +.+..----+++.-...|+.+-..+++. .+.+..+...-..+ +..+..-|..+|.+.
T Consensus 422 l~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~----e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 422 LDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK----EDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH----HTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred hccC-ccchHHhhHHhHHHHhccHHHHHHHHHh----cCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 6665 4444333334444445555544444432 23344443322211 333555555555543
No 353
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.07 E-value=1.3e+02 Score=19.97 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=23.1
Q ss_pred hhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHH
Q 012577 73 LRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVK 110 (460)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 110 (460)
....+.|..+++.++. ....+|..++.++.+.+...
T Consensus 49 ~t~~~kar~Lld~l~~--kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILK--KDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHH--cCHHHHHHHHHHHHHcCHHH
Confidence 3456667777777765 55666777777766666543
No 354
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.02 E-value=1.9e+02 Score=21.90 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=28.0
Q ss_pred HHHHHHhcccC---CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 012577 79 AESYIQKIPES---FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 79 a~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 127 (460)
+..+|..|... ..-+..|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 44455554433 22344566666666666777777777766666655543
No 355
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=28.94 E-value=5e+02 Score=26.80 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHc
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKE 156 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~ 156 (460)
|..|++. .+.-+.++-.+++.++... ...-..++++....|...+.....+....
T Consensus 313 f~~Lv~~-lR~~~~e~L~~l~~~~~~~-----~~~r~~~lDal~~aGT~~a~~~i~~~i~~ 367 (1056)
T 1lsh_A 313 FLRLTAF-LRNVDAGVLQSIWHKLHQQ-----KDYRRWILDAVPAMATSEALLFLKRTLAS 367 (1056)
T ss_dssp HHHHHHH-HTTSCHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHCSHHHHHHHHHHHHT
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHhcc-----HHHHHHHHHHhHhcCCHHHHHHHHHHHHc
Confidence 3444333 3334455555555555431 12223355566666664444444444433
No 356
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.42 E-value=4.8e+02 Score=26.38 Aligned_cols=89 Identities=4% Similarity=-0.151 Sum_probs=52.2
Q ss_pred HHHHHHHhcCc----hHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 133 QLLILYKRLDK----KKVADVLLLMEKE----NVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204 (460)
Q Consensus 133 ~ll~~~~~~~~----~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 204 (460)
.++...|..|. ..|.+.|+..... .++||... .+...-.+.|+-++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 44555666666 5566677666543 24555432 2223334556666666666666653 3444455677
Q ss_pred HHHHhCCChHHHHHHHHHHHhC
Q 012577 205 KHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.+++...+.+...++++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHhCCCCCHHHHHHHHHHHhCC
Confidence 7777777777777777766553
No 357
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.18 E-value=4.8e+02 Score=26.35 Aligned_cols=158 Identities=11% Similarity=0.008 Sum_probs=82.9
Q ss_pred HHHHHHHHhCCCh---HHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHH
Q 012577 201 AILAKHYVSGGRK---EKAEAMLKEMEGD----NLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEA 273 (460)
Q Consensus 201 ~~l~~~~~~~~~~---~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 273 (460)
..++...|..|.. +.|.+.|+..... .+.||... .+...-.+.|..++-..+++......+..--..++.+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~a 767 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSA 767 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 4466667777764 4677777776543 24555432 2222233456666666666666666666666777888
Q ss_pred HHccCCHHHHHHHHHHHHhcc-cCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCC
Q 012577 274 WGKLNKVEEAEAVFKRMSKTW-KKLSTKHYTALLKVYADHK-MLSKGKDLVKQMAE---SGCHIGPLAWDALVKLHVEGG 348 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~ 348 (460)
++...+.....++++...... +++. ... .++.+...+. ..+.|.+.+..=.+ ..+......+..++......-
T Consensus 768 L~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~ 845 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRF 845 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 888888888888887766533 3322 222 2233333221 12333333332111 112233345666776666554
Q ss_pred ChhhHHHHHHHHHH
Q 012577 349 EVEKADSILLKAQQ 362 (460)
Q Consensus 349 ~~~~a~~~~~~~~~ 362 (460)
.-++-.+-++...+
T Consensus 846 ~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 846 SSEFELQQLEQFKK 859 (909)
T ss_dssp CSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 44444444444443
No 358
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.78 E-value=2e+02 Score=23.03 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG-DIHSTEKIFHRMRQV 399 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 399 (460)
+.+..+..|...+...+..+........-...|..++.. ... +-.-|-.-+.+.| ..+.+..++..+.+.
T Consensus 35 l~~~~L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~--r~~-------S~~EL~~KL~~kg~~~e~i~~vl~~L~~~ 105 (221)
T 3d5l_A 35 LIQFRLMKGTELDEKQIAAIATADQQAKAYSRMLDYLSY--QMR-------TESDIVKKLKEIDTPEEFVEPILKKLRGQ 105 (221)
T ss_dssp HHHTTCCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTT--SCC-------CHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhcc--ccc-------cHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q ss_pred CCCccHHHHHHHHHHHHh-cCCchhhhHHHHHhCCCCcCHH
Q 012577 400 GYVARFKQFQTLVQAYIN-AKTPAYGIRDRMRADNVFPNKA 439 (460)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~m~~~~~~p~~~ 439 (460)
|+-.|...-..+++...+ .|.-...+...+...|+.++..
T Consensus 106 g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I 146 (221)
T 3d5l_A 106 QLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDI 146 (221)
T ss_dssp TCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHH
No 359
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=27.78 E-value=1.2e+02 Score=19.05 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCC-chhhhHHHHHhCCCCcCHHHHHHHHHHHHHhhhhhhhhc
Q 012577 406 KQFQTLVQAYINAKT-PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELL 459 (460)
Q Consensus 406 ~~~~~l~~~~~~~g~-~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~l 459 (460)
.+|-.|+-.-.. .. .+..+-...++.|+..+..-...+ ++.++..++.+++
T Consensus 9 ~~YAAllL~~~g-~~~ta~~I~~il~AaGveve~~~~~lf--~~aL~gk~I~elI 60 (69)
T 2lbf_A 9 CIYSALILHDDE-VTVTEDKINALIKAAGVNVEPFWPGLF--AKALANVNIGSLI 60 (69)
T ss_dssp HHHHHHHHHHHT-CCCCHHHHHHHHHHHTCCCCTHHHHHH--HHHTTTSCGGGGG
T ss_pred HHHHHHHHHcCC-CCCCHHHHHHHHHHcCCCccHHHHHHH--HHHHCCCCHHHHH
Confidence 456666665552 22 466777778888888888777777 6666666666665
No 360
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.22 E-value=1.4e+02 Score=21.74 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=9.6
Q ss_pred HHHhhcCChhHHHHHHHHHHhCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
..+...++.-.|.++++.+.+.+
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~ 43 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKG 43 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhC
Confidence 33333333444444444444443
No 361
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.05 E-value=46 Score=20.08 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=18.9
Q ss_pred cccchhHHHHHHHHHhcccCCCCh
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIE 60 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~ 60 (460)
.-+++.|+..|..+...+.+|++.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888999999988877677654
No 362
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.99 E-value=3.8e+02 Score=24.84 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHcC
Q 012577 387 HSTEKIFHRMRQVG 400 (460)
Q Consensus 387 ~~a~~~~~~m~~~~ 400 (460)
++|+.+..+|+..|
T Consensus 417 eeaE~iVAkmI~dG 430 (523)
T 4b4t_S 417 QTVEYMVSRAIRDG 430 (523)
T ss_dssp SCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 45677777777666
No 363
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.83 E-value=75 Score=25.80 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=13.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCC
Q 012577 102 NCVAGNNVKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~g~~~~ 127 (460)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 33445555555555555555444333
No 364
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=26.80 E-value=2.4e+02 Score=22.37 Aligned_cols=121 Identities=7% Similarity=0.026 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHhcccch-hHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC---CCchh
Q 012577 19 GNDLSRAEIALAMANLRTRRMYG-KALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES---FRGEV 94 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 94 (460)
...++...+..++..+...+... .+..+|+.+-..+.-..+..-+...+..+......+.....|+.+-.. .-+..
T Consensus 79 ~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~ 158 (229)
T 3dd4_A 79 SGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKE 158 (229)
T ss_dssp SCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHH
T ss_pred CCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHH
Confidence 34578888888888764433332 344566655444322345555555555555444445566667666443 23444
Q ss_pred HHHHHHHHHH------------cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhc
Q 012577 95 VYRTLLANCV------------AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRL 141 (460)
Q Consensus 95 ~~~~ll~~~~------------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 141 (460)
-+..++.... ..-.-+.+..+|..+-..| ....+|.-++..+.+.
T Consensus 159 E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~ 215 (229)
T 3dd4_A 159 EMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK--DGVVTIDEFIESCQKD 215 (229)
T ss_dssp HHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSC--SSBCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCC--CCcEeHHHHHHHHHhC
Confidence 4444444431 1112356777787774432 1345666666666543
No 365
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.06 E-value=81 Score=20.58 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 350 VEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
.++|...|.+|+...++.|+ .+|...+...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~ 46 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHc
Confidence 34555555555555555554 35555444443
No 366
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.81 E-value=1.6e+02 Score=21.09 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=16.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
.+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33344444444444444433344444444444444443
No 367
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=25.69 E-value=1e+02 Score=20.22 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 012577 79 AESYIQK 85 (460)
Q Consensus 79 a~~~~~~ 85 (460)
+..+|..
T Consensus 67 ~~~l~~~ 73 (94)
T 2kz2_A 67 VDEMIRE 73 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 368
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.64 E-value=1.1e+02 Score=21.85 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 212 (460)
.+++.+...+..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445555555566677777777666544455554444455555544
No 369
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=25.62 E-value=1.5e+02 Score=19.71 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHH---hcc---cchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 21 DLSRAEIALAMANLR---TRR---MYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~---~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
.++.+.+..+.-.+. ..+ +...+.++|..+.+.+. .++.....+...+...|+.+-..++...
T Consensus 14 ~L~~eel~~LKFLc~d~i~~~kle~i~s~~dlf~~Le~~~~--l~~~nl~~L~elL~~I~R~DLl~~v~~~ 82 (91)
T 1a1w_A 14 SLSSSELTELKYLCLGRVGKRKLERVQSGLDLFSMLLEQND--LEPGHTELLRELLASLRRHDLLRRVDDF 82 (91)
T ss_dssp TTHHHHHHHHHHHHHHHTCSHHHHHCSSSHHHHHHHHHTTS--CBTTBCHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HcCHHHHHHHHHHhHhhccchhhhccCCHHHHHHHHHHcCC--CCcchHHHHHHHHHHCCHHHHHHHHHHh
Confidence 455556655544332 233 33345999999999884 4455566677778888888888776654
No 370
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.31 E-value=2.4e+02 Score=21.97 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=10.8
Q ss_pred HHHHHHHhhCHHHHHHHHHh
Q 012577 66 CLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~ 85 (460)
.+...+..|+.+-+..+++.
T Consensus 43 ~L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 43 ALHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 34444556666655555554
No 371
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.03 E-value=3.2e+02 Score=23.23 Aligned_cols=23 Identities=0% Similarity=-0.098 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcccchhHHHHHHH
Q 012577 27 IALAMANLRTRRMYGKALQLSEW 49 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~ 49 (460)
...++..|...|+.++|...++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~e 28 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRD 28 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555555555555555544
No 372
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=24.99 E-value=1.7e+02 Score=19.96 Aligned_cols=31 Identities=26% Similarity=0.160 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHh
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLET 52 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 52 (460)
++......+.......|+...|..+++.+.+
T Consensus 41 L~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r 71 (100)
T 2lwd_A 41 LINQECEEILQICSTKGMMAGAEKLVECLLR 71 (100)
T ss_dssp SCHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccChHHHHHHHHHHHHh
Confidence 3444444444444455555555555554443
No 373
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.90 E-value=2.5e+02 Score=21.92 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=30.0
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccC--CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 127 (460)
.+...+..|+++....+++.-+.. .++..-++. +...+..|+.+- ++.+.+.|..++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~ 67 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCC
Confidence 456667788888888888764331 122222223 333445566543 344445554443
No 374
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=24.34 E-value=77 Score=19.97 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 350 VEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
.++|...|.+|+...++.|+ .+|...+..+.
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~ 44 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMII 44 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHc
Confidence 45555555555555555543 34554444443
No 375
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.27 E-value=2.3e+02 Score=21.34 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=38.9
Q ss_pred ccCCHHHHHHHHHHHHhcccCc--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKL--STKHYTALLK------VYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~------~~~~~g~~~~a~~~~~~~~~ 327 (460)
..|++-+|-++++..=.....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3489999999999887665555 4556777777 23457999999999998866
No 376
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.12 E-value=2.6e+02 Score=21.91 Aligned_cols=93 Identities=13% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHcc---CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 270 AIEAWGKL---NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM-----LSKGKDLVKQMAESGCHIGPLAWDALV 341 (460)
Q Consensus 270 li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (460)
+|+++.|+ .+.+.|+-.+.+|++.|..|....-..++.+...-|. ...|...++....-|.+--...+...+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHcCCChhhHHHHHHHHHH
Q 012577 342 KLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~ 362 (460)
..++.+-+-..+...++.+.+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 377
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.82 E-value=2.7e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=21.3
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK 313 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 313 (460)
+..+.+.|+-.+.+|++.| .|....-..++.+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666777777777766 555444444455554444
No 378
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=23.50 E-value=2.9e+02 Score=22.29 Aligned_cols=129 Identities=10% Similarity=0.049 Sum_probs=67.2
Q ss_pred CChhhhHHHHHHHHHh-hCHHHHHHHHHhcccCCCchhH---HHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCChhhhH
Q 012577 58 FIERDYASCLDLIAKL-RGLQKAESYIQKIPESFRGEVV---YRTLLANCVAGNNVKKAEEVFNRMKDKG-FPVTSFACN 132 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~ 132 (460)
.+...+..++..+... .....+..+|..+-.......+ |..++..+......++...+|+.+-..| -..+..-+.
T Consensus 109 I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~ 188 (256)
T 2jul_A 109 VDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEML 188 (256)
T ss_dssp EEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHH
T ss_pred CCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 3434444444433222 2235677788887654333333 4444444443334556666676553221 123444444
Q ss_pred HHHHHHH-hcC-----------c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 133 QLLILYK-RLD-----------K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 133 ~ll~~~~-~~~-----------~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
.++..+. ..| . +.+..+|..+-..| ....++.-++..+.+...+-++...|+.+
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 189 AIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 4444332 112 1 44556665553332 23457888888888888888888888765
No 379
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.49 E-value=1.1e+02 Score=22.35 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 012577 201 AILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (460)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455556666667778888888888777777777666677777666543
No 380
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.46 E-value=3.6e+02 Score=23.25 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHcCCC
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKENVK 159 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~ 159 (460)
...++.-|...|+.++|...++++...... .......+..++-+... +.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 456888899999999999999887422110 11111222222222221 5556777777766543
No 381
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=23.43 E-value=2e+02 Score=20.20 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhcCCH
Q 012577 372 SYMLIMDQYAKRGDI 386 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~ 386 (460)
++...++...+.|-+
T Consensus 55 s~rd~~r~a~~~glI 69 (119)
T 1wwp_A 55 SPKGVIRLAREVGLL 69 (119)
T ss_dssp SHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHcCCC
Confidence 334444444444433
No 382
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=23.42 E-value=99 Score=19.87 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=24.5
Q ss_pred HHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012577 81 SYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 119 (460)
.++.+++...|++.+|+-+...+-+..-..++..+.+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456667766677777877776655555455555555544
No 383
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.81 E-value=2.8e+02 Score=21.80 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
+..+.+.|+-.+-+|++.| .|.-..-..++.+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4566777777777777777 444333334444444333
No 384
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.80 E-value=2.6e+02 Score=21.37 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCC
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKL 160 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (460)
.+.+..+++.+.+.|..-|...-...+....+.+......+-..+.+.|+.+
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCH
Confidence 4455666777777776655555555565555544334455666677777643
No 385
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.59 E-value=1.5e+02 Score=18.74 Aligned_cols=7 Identities=0% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 012577 182 DQVVEAM 188 (460)
Q Consensus 182 ~~~~~~m 188 (460)
.++++.+
T Consensus 37 ~el~~~l 43 (83)
T 2fu4_A 37 EDLYKRL 43 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 386
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.94 E-value=3e+02 Score=23.25 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=7.2
Q ss_pred HHHHHHHhCCCCC
Q 012577 11 TLTKYAEEGNDLS 23 (460)
Q Consensus 11 ~l~~~~~~~~~~~ 23 (460)
+++.+++.|..++
T Consensus 40 ~V~~LL~~Gadvn 52 (337)
T 4g8k_A 40 LVQQLLEGGANVN 52 (337)
T ss_dssp HHHHHHHHTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 4555666665543
No 387
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.80 E-value=1.4e+02 Score=23.30 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=10.4
Q ss_pred HHHHHHhhCHHHHHHHHHhc
Q 012577 67 LDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~ 86 (460)
+...++.|+.+.+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 33444556665555555543
No 388
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=20.65 E-value=1.5e+02 Score=17.75 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=25.7
Q ss_pred chhhhHHHHHhCCCCcCHHHHHHHHHHHHHhhhhhhhhc
Q 012577 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELL 459 (460)
Q Consensus 421 ~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~l 459 (460)
.+..+-...++.|+..+..-...+ ++.+...++.+++
T Consensus 18 t~~~I~~il~aaGveve~~~~~~~--~~~L~gk~i~elI 54 (58)
T 3a1y_A 18 NEENLKAVLQAAGVEPEEARIKAL--VAALEGVNIDEVI 54 (58)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHH--HHHHSSCCHHHHH
T ss_pred CHHHHHHHHHHcCCCccHHHHHHH--HHHHCCCCHHHHH
Confidence 466677777888888888777777 6666555555553
No 389
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=20.55 E-value=2.9e+02 Score=21.37 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=11.3
Q ss_pred HHHHHHHhhCHHHHHHHHHh
Q 012577 66 CLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~ 85 (460)
.+...+..|+.+-+..+++.
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~~ 47 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLEA 47 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHHc
Confidence 44444556666666555554
No 390
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.39 E-value=2.2e+02 Score=20.36 Aligned_cols=152 Identities=9% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHhc--ccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhc
Q 012577 64 ASCLDLIAKLRGLQKAESYIQKI--PESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRL 141 (460)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 141 (460)
...+...+..|+.+.+..+++.. .....+..-++.|.. +..|+.+-+..+++. ...+......-.+.+...+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHT
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHc
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 012577 142 DKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (460)
|+.+..+++-+.-..--.+|....+.|..+. ..|+.+-+.-+++. ..+......-.+-+...+..|+.+-+.-+++
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAV-QEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH-HhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q ss_pred HH
Q 012577 222 EM 223 (460)
Q Consensus 222 ~~ 223 (460)
.+
T Consensus 155 ~~ 156 (156)
T 1bd8_A 155 HM 156 (156)
T ss_dssp TC
T ss_pred hC
Done!