BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012578
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 156/291 (53%), Gaps = 36/291 (12%)
Query: 169 DDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLA 228
DDP+ I +D K + ++P F GG +GY SYD VR+ EK + K +D A
Sbjct: 57 DDPVNILNGYLKDLK---LADIPGLFKGGMIGYISYDAVRFWEKIRD--LKPAAEDWPYA 111
Query: 229 DIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDL 288
+ ++++++DH E KVYV SSV G
Sbjct: 112 EFFTP--DNIIIYDHNEGKVYVNA-----DLSSVGGCGDIG------------------- 145
Query: 289 HTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA-DPFEVYRAL 347
F ++ +Y+ V E+ E+I++G IFQ+VLS RF R F+ DP +Y L
Sbjct: 146 ---EFKVSFYDESLNKNSYERIVSESLEYIRSGYIFQVVLS-RFYRYIFSGDPLRIYYNL 201
Query: 348 RVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQL 407
R +NPSPYM YL+ L+ SSPE+L RV+ N + P+AGT RG EED LE +L
Sbjct: 202 RRINPSPYMFYLKFDEKYLIGSSPELLFRVQDNIVETYPIAGTRPRGADQEEDLKLELEL 261
Query: 408 LKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
+ K AEH+MLVDL RND+GKV G+VKV +LM VE+YSHV HI S V
Sbjct: 262 MNSEKDKAEHLMLVDLARNDLGKVCVPGTVKVPELMYVEKYSHVQHIVSKV 312
>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
Length = 453
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 168/330 (50%), Gaps = 33/330 (10%)
Query: 134 RYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISE--DWKPQIIDELP 191
R+ +V A+P+ + + + EK + DDP+++ +++ + D +P ++LP
Sbjct: 45 RFDIVVAEPICTLTTFGKETVVSESEKRT---TTTDDPLQVLQQVLDRADIRPTHNEDLP 101
Query: 192 EAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVI 251
F GG +G F YD R E LP + D L D+ +G+Y+ L+ DH
Sbjct: 102 --FQGGALGLFGYDLGRRFES--LP--EIAEQDIVLPDMAVGIYDWALIVDHQR------ 149
Query: 252 HWVRLDQHSSV--QKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKN 309
H V L H+ V ++A+ E ++ ++ T + D +SNMT E Y
Sbjct: 150 HTVSLLSHNDVNARRAWLES----QQFSPQEDFTLTSDW----------QSNMTREQYGE 195
Query: 310 AVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVAS 369
+ +E++ +GD +Q+ L+QRF D ++ + L N +P+ +L+ +++
Sbjct: 196 KFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSL 255
Query: 370 SPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVG 429
SPE ++I RP+ GT+ R +ED +L AK AE++M+VDL RND+G
Sbjct: 256 SPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIG 315
Query: 430 KVARSGSVKVEKLMNVERYSHVMHISSTVS 459
+VA +GSVKV +L VE + V H+ ST++
Sbjct: 316 RVAVAGSVKVPELFVVEPFPAVHHLVSTIT 345
>pdb|1I7Q|A Chain A, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|C Chain C, Anthranilate Synthase From S. Marcescens
pdb|1I7S|A Chain A, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|C Chain C, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 519
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 129/268 (48%), Gaps = 21/268 (7%)
Query: 200 GYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQH 259
G F+YD V E LP A D+ D L +LV DH + V +Q
Sbjct: 147 GLFAYDLVAGFEN--LP---ALRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQA 201
Query: 260 SSVQKAYAEGLEH-LEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHI 318
S Q+ L+H LE+L A H L N + E Y V E +E I
Sbjct: 202 SEAQR-----LQHRLEQLQAELQQPPQPIPHQKLENMQLS-CNQSDEEYGAVVSELQEAI 255
Query: 319 QAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTR-- 376
+ G+IFQ+V S+RF A P Y+ L+ NPSPYM ++Q L +SPE +
Sbjct: 256 RQGEIFQVVPSRRFSLPCPA-PLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYD 314
Query: 377 VKKNKIVNRPLAGTVRRGRTTEE------DEMLETQLLKDAKQCAEHVMLVDLGRNDVGK 430
+I P+AGT RGR + D +E ++ D K+ AEH+MLVDL RND+ +
Sbjct: 315 AGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLAR 374
Query: 431 VARSGSVKVEKLMNVERYSHVMHISSTV 458
+ ++GS V L V+RYS VMH+ S V
Sbjct: 375 ICQAGSRYVADLTKVDRYSFVMHLVSRV 402
>pdb|4GRH|A Chain A, Crystal Structure Of Pabb Of Stenotrophomonas Maltophilia
Length = 457
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 129/270 (47%), Gaps = 26/270 (9%)
Query: 194 FCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVF-DHVEKKVYVIH 252
F GGW Y+ +E LP ++A D R A L L V DH + +VI
Sbjct: 100 FRGGWALMLDYEVASQIEPV-LP-ARARGDGRPTA---LALRCPAAVLHDHHNEASFVI- 153
Query: 253 WVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVL 312
AE E + + ++ + PP + + + V
Sbjct: 154 --------------AEAGEQALLDALVALASAALPEAGQGWQPPQAVGEDAPQRFTDGVR 199
Query: 313 EAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYMTYLQARGCILVASS 370
E+++AGD+FQ+ LS+R+ + A P +Y LR NP+P+ A G +V+SS
Sbjct: 200 RVIEYLRAGDVFQVNLSRRWNAQFAAPVSPQALYAQLRRANPAPFAGLFSAHGRHVVSSS 259
Query: 371 PEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQ-LLKDAKQCAEHVMLVDLGRNDVG 429
PE L V RP+AGT R R +D+ Q L+ K+ AEHVML+DL RND+G
Sbjct: 260 PERLVSVHAGHAQTRPIAGT--RPRFEGDDDAARIQELVGHPKERAEHVMLIDLERNDLG 317
Query: 430 KVARSGSVKVEKLMNVERYSHVMHISSTVS 459
++ G+V V++LM VE Y+HV HI S VS
Sbjct: 318 RICLPGTVVVDELMTVESYAHVHHIVSNVS 347
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 130/274 (47%), Gaps = 29/274 (10%)
Query: 198 WVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWV--- 254
+ G F+YD V E LP +A ++ D L ++V DH +K + +
Sbjct: 146 FGGLFAYDLVAGFEA--LPHLEAGNN---CPDYCFYLAETLMVIDHQKKSTRIQASLFTA 200
Query: 255 --RLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVL 312
R Q + + AY + L + +T D+ + N + +A+ V
Sbjct: 201 SDREKQRLNARLAYLS--QQLTQPAPPLPVTPVPDMRC--------ECNQSDDAFGAVVR 250
Query: 313 EAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPE 372
+ ++ I+AG+IFQ+V S+RF P Y L+ NPSPYM ++Q L +SPE
Sbjct: 251 QLQKAIRAGEIFQVVPSRRFSLPC-PSPLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPE 309
Query: 373 --ILTRVKKNKIVNRPLAGTVRRGRTTEE------DEMLETQLLKDAKQCAEHVMLVDLG 424
+ +I P+AGT RGR + D +E + D K+ +EH+MLVDL
Sbjct: 310 SSLKYDAASRQIEIYPIAGTRPRGRRADGTLDRDLDSRIELDMRTDHKELSEHLMLVDLA 369
Query: 425 RNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
RND+ ++ GS V L V+RYS+VMH+ S V
Sbjct: 370 RNDLARICTPGSRYVADLTKVDRYSYVMHLVSRV 403
>pdb|3H9M|A Chain A, Crystal Structure Of Para-Aminobenzoate Synthetase,
Component I From Cytophaga Hutchinsonii
Length = 436
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%)
Query: 299 KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTY 358
K ++ E+Y NA E ++ I GD ++I F + P Y+ L P P+ Y
Sbjct: 157 KQVVSKESYFNAFDELQQIIAQGDAYEINYCIPFTAKGNISPAATYQRLNKKTPXPFSVY 216
Query: 359 LQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHV 418
+ ++++SPE + + I+++P+ GT +RG++ EDE L+ QL K+ +E+
Sbjct: 217 YKFNTEYILSASPERFIKKTGDTIISQPIKGTSKRGKSKAEDEXLKQQLGTSEKEQSENT 276
Query: 419 MLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
+VDL RND+ + A +GSV V +L + + +V + STV
Sbjct: 277 XIVDLVRNDLSRTAVAGSVCVPELSGLYTFPNVHQLISTV 316
>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
Length = 437
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 2/171 (1%)
Query: 290 THHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFAD-PFEVYRALR 348
T P + + EAYK V A I+ G+ ++++S+ + D P + +
Sbjct: 161 TTQNAPLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQ 220
Query: 349 VVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLL 408
P + Q G + SPE++ V NK+V PLAGT R E ++ E +LL
Sbjct: 221 ANTPVRSFMFRQ-EGREALGFSPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELL 279
Query: 409 KDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
D+K+ EH++ V ++ V GSV VE LM+V + V H+ S VS
Sbjct: 280 HDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQHLGSGVS 330
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 186 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 244
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 245 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 304
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
++ +A GS V M V V H+ ST+
Sbjct: 305 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTI 339
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 188 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 246
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 247 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 306
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
++ +A GS V M V V H+ ST+
Sbjct: 307 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTI 341
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 186 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 244
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 245 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 304
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
++ +A GS V M V V H+ ST+
Sbjct: 305 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTI 339
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 206 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 264
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 265 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 324
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
++ +A GS V M V V H+ ST+
Sbjct: 325 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTI 359
>pdb|3OS6|A Chain A, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|B Chain B, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|C Chain C, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|D Chain D, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis
Length = 399
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYMTYLQ-- 360
E Y V + E I+ GD+ +IVLS+ + ++ D ++ R L N Y +
Sbjct: 122 EVYXKGVKQGIEKIKDGDLKKIVLSRSLDVKSSGKIDKQKLLRELAEHNKHGYTFAVNLP 181
Query: 361 ----ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAK 412
L+ +SPE+L ++++ PLAG+ R ED+ +LL K
Sbjct: 182 KDENENSKTLIGASPELLVSRHGXQVISNPLAGSRPRSDDPVEDKRRAEELLSSPK 237
>pdb|3HWO|A Chain A, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
pdb|3HWO|B Chain B, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
Length = 394
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 351 NPSPYMTYLQ-ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLE----T 405
NP Y ++ A G +L+ +SPE+L R + + PLAG+ RR + DE+L+
Sbjct: 178 NPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR----QPDEVLDREAGN 233
Query: 406 QLLKDAKQCAEHVMLV 421
+LL K EH ++
Sbjct: 234 RLLASEKDRHEHELVT 249
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 314 AKEHIQAGDIFQIVLSQRFERRTFADPFEVYRAL---RVVNPSPYMTYLQARG-CILVAS 369
A + I G++ ++VL+ R FA P + R +N + Y Y+ G + S
Sbjct: 179 ATKTIAEGELDKVVLA-RATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFLGS 237
Query: 370 SPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVD 422
SPE L R + + LAGTV ++ + L L+ D K E++++V+
Sbjct: 238 SPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVE 290
>pdb|3GSE|A Chain A, Crystal Structure Of Menaquinone-specific Isochorismate
Synthase From Yersinia Pestis Co92
Length = 458
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 254 VRLDQHSSVQKAYAEGLEHLEKLVARK---VITRSIDLHTHHFGPPLKKSNMTSEAYKNA 310
+ L +S+QK + + +++L+A + V+ I +H G P ++N
Sbjct: 146 LNLSSETSLQKDALQAITFIDQLMAARALPVLNARIQHSSHTPGYP---------QWRNL 196
Query: 311 VLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV---YRALRVVNPSPY--MTYLQARGCI 365
+ +A I+ + ++VL+ R T P A R VN Y M R
Sbjct: 197 IQQALNDIEQQKLDKVVLA-RTTTLTLNKPLSCAAFMAASRQVNHRCYHFMLRFDDRQAF 255
Query: 366 LVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVD 422
L SSPE L ++ + LAGTV + + +L L+ D K E++++VD
Sbjct: 256 L-GSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVVD 311
>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|1 Chain 1, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|M Chain M, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|0 Chain 0, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|M Chain M, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|0 Chain 0, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|7 Chain 7, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 266
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 268 EGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIV 327
G+E L + V+ S D+ L K +T AY N + +A+E ++ IF+ +
Sbjct: 70 NGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYL 129
Query: 328 LSQRFERRTFADPFEVYRALRVV----NPSPYMTYLQARGCILVASSPEILT 375
+ ++RR+ +P ++ A+ V N ++ Y+ G SSP + T
Sbjct: 130 ATVMYQRRSKMNP--LWNAIIVAGVQSNGDQFLRYVNLLGVTY--SSPTLAT 177
>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|2 Chain 2, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|M Chain M, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|1 Chain 1, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|M Chain M, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|T Chain T, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|M Chain M, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|1 Chain 1, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|M Chain M, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|1 Chain 1, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|M Chain M, Proteasome Inhibition By Fellutamide B
pdb|3D29|1 Chain 1, Proteasome Inhibition By Fellutamide B
pdb|3E47|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|M Chain M, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|1 Chain 1, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|N Chain N, Proteasome Activator Complex
pdb|1VSY|2 Chain 2, Proteasome Activator Complex
pdb|3L5Q|R Chain R, Proteasome Activator Complex
pdb|3L5Q|4 Chain 4, Proteasome Activator Complex
pdb|3MG4|M Chain M, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|1 Chain 1, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|M Chain M, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|1 Chain 1, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|M Chain M, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|1 Chain 1, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|M Chain M, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|1 Chain 1, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|M Chain M, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|1 Chain 1, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|M Chain M, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|AA Chain a, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|N Chain N, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|M Chain M, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|AA Chain a, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|M Chain M, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|AA Chain a, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 233
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 268 EGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIV 327
G+E L + V+ S D+ L K +T AY N + +A+E ++ IF+ +
Sbjct: 37 NGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYL 96
Query: 328 LSQRFERRTFADPFEVYRALRVV----NPSPYMTYLQARGCILVASSPEILT 375
+ ++RR+ +P ++ A+ V N ++ Y+ G SSP + T
Sbjct: 97 ATVMYQRRSKMNP--LWNAIIVAGVQSNGDQFLRYVNLLGVTY--SSPTLAT 144
>pdb|3IFA|A Chain A, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|B Chain B, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|C Chain C, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|D Chain D, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFC|A Chain A, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|B Chain B, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|C Chain C, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|D Chain D, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
Length = 338
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 197 GWVGYFSYDTVRYVEKKKLPF-SKAPHDDR----SLADIHLGL-YNDVLVFDHVEK 246
G+ YF T YV+KKK P AP+ R +AD+H L Y + ++ +K
Sbjct: 214 GYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQK 269
>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGXSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGXSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
E.Coli
Length = 731
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGCSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
Refinement Against Nmr And Saxs Data
Length = 723
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGCSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,504,691
Number of Sequences: 62578
Number of extensions: 499760
Number of successful extensions: 1130
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 24
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)