RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012578
(460 letters)
>gnl|CDD|215244 PLN02445, PLN02445, anthranilate synthase component I.
Length = 523
Score = 789 bits (2039), Expect = 0.0
Identities = 306/390 (78%), Positives = 344/390 (88%), Gaps = 7/390 (1%)
Query: 77 FSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYS 136
F EA+K NLVPLYR IFSDHLTPV+AYRCLV+EDDREAPSFLFESVEPG + SNVGRYS
Sbjct: 1 FKEAAKGGNLVPLYRRIFSDHLTPVLAYRCLVKEDDREAPSFLFESVEPGSQSSNVGRYS 60
Query: 137 VVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCG 196
VVGAQP ME++ K+N VTIMDHEKG+ EE+V+DPMEIPR+ISE W PQ+ID LP+ FCG
Sbjct: 61 VVGAQPAMEIVAKENKVTIMDHEKGTRTEEIVEDPMEIPRRISEKWNPQLIDGLPDVFCG 120
Query: 197 GWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRL 256
GWVGYFSYDTVRYVEKKKLPFS AP DDR+L DIHLGLY+DV+VFDHVEKK YVIHWVRL
Sbjct: 121 GWVGYFSYDTVRYVEKKKLPFSGAPEDDRNLPDIHLGLYDDVIVFDHVEKKAYVIHWVRL 180
Query: 257 DQHSSVQKAYAEGLEHLEKLVAR-------KVITRSIDLHTHHFGPPLKKSNMTSEAYKN 309
D++SSV++AY +G++ LE LV+R K+ S+ L T+ FGP L+KSNMTSE YKN
Sbjct: 181 DRYSSVEEAYEDGMKRLEALVSRLQDINPPKLSPGSVKLSTNQFGPSLEKSNMTSEEYKN 240
Query: 310 AVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVAS 369
AVL+AKEHI AGDIFQIVLSQRFERRTFADPFEVYRALR+VNPSPYM YLQARGCILVAS
Sbjct: 241 AVLQAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMIYLQARGCILVAS 300
Query: 370 SPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVG 429
SPEILTRVKKNKIVNRPLAGT RRG+T EED+ LE LL D KQCAEH+MLVDLGRNDVG
Sbjct: 301 SPEILTRVKKNKIVNRPLAGTRRRGKTPEEDKALEKDLLADEKQCAEHIMLVDLGRNDVG 360
Query: 430 KVARSGSVKVEKLMNVERYSHVMHISSTVS 459
KV+++GSVKVEKLMN+ERYSHVMHISSTV+
Sbjct: 361 KVSKAGSVKVEKLMNIERYSHVMHISSTVT 390
>gnl|CDD|233026 TIGR00564, trpE_most, anthranilate synthase component I,
non-proteobacterial lineages. This enzyme resembles
some other chorismate-binding enzymes, including
para-aminobenzoate synthase (pabB) and isochorismate
synthase. There is a fairly deep split between two sets,
seen in the pattern of gaps as well as in amino acid
sequence differences. Archaeal enzymes have been
excluded from this model (and are now found in
TIGR01820) as have a clade of enzymes which constitute a
TrpE paralog which may have PabB activity (TIGR01824).
This allows the B. subtilus paralog which has been shown
to have PabB activity to score below trusted to this
model. This model contains sequences from gram-positive
bacteria, certain proteobacteria, cyanobacteria, plants,
fungi and assorted other bacteria.A second family of
TrpE enzymes is modelled by TIGR00565. The breaking of
the TrpE family into these diverse models allows for the
separation of the models for the related enzyme, PabB
[Amino acid biosynthesis, Aromatic amino acid family].
Length = 454
Score = 439 bits (1132), Expect = e-152
Identities = 168/368 (45%), Positives = 211/368 (57%), Gaps = 24/368 (6%)
Query: 95 SDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVT 154
+D LTP+ AY L Q SFL ES EPG S GRYS +G PV+ + +
Sbjct: 1 ADTLTPISAYLKLAQP-----GSFLLESAEPG---SERGRYSFIGLNPVLTIKTEGGTEY 52
Query: 155 IMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKK 214
+V +P++ R + E + ELP F GG VGY YDTVR EK
Sbjct: 53 ---LGADDRRSGIVGNPLDEIRDVMETFAQHSDPELPIPFTGGAVGYLGYDTVRLFEKIT 109
Query: 215 LPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLE 274
LP P D +L D +L L +D ++FDHV K+Y+IH R S A A LE
Sbjct: 110 LP----PPDPLNLPDAYLMLCDDFIIFDHVTDKLYLIHNNRTTASRS---AKAAADARLE 162
Query: 275 KLVARKVITRSIDLHTHHFGPPLK---KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQR 331
LVA + + L P SN E Y+ V +AKE+I+AGDIFQ+VLSQR
Sbjct: 163 ALVAD--LQDPL-LPEVPVPYPAALSFTSNYEKEEYEANVAKAKEYIKAGDIFQVVLSQR 219
Query: 332 FERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTV 391
FE +T A PFE+YR LR+VNPSPYM YL +V SSPE+L +V +I RP+AGT
Sbjct: 220 FEAKTEAPPFELYRVLRIVNPSPYMYYLDFGDFQIVGSSPELLVKVTGGRITTRPIAGTR 279
Query: 392 RRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHV 451
+RG T EEDE L +LL D K+ AEH+MLVDLGRND+G+V GSV+V + M +ERYSHV
Sbjct: 280 KRGATPEEDEALAEELLADEKERAEHLMLVDLGRNDIGRVCEPGSVEVPEFMKIERYSHV 339
Query: 452 MHISSTVS 459
MHI STV
Sbjct: 340 MHIVSTVE 347
>gnl|CDD|223225 COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component
I [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 462
Score = 339 bits (871), Expect = e-112
Identities = 153/374 (40%), Positives = 206/374 (55%), Gaps = 28/374 (7%)
Query: 88 PLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVI 147
P +D TP+ Y L R +FL ES E + GRYS++G P++ +
Sbjct: 1 PSLLSFTADLETPLSLYLKLAASRPR---AFLLESAEIYEKY---GRYSIIGLDPLLRLR 54
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISE-DWKPQIIDELPEAFCGGWVGYFSYDT 206
+ V + E+ + +++ DP+E R + E + F GG VGYFSYD
Sbjct: 55 AFGDEVISANGEELAKELDLLADPLEELRSLLEFVAPRAALPNSEPPFQGGLVGYFSYDL 114
Query: 207 VRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAY 266
VRY + D GLY++VLVFDH + K+Y+I
Sbjct: 115 VRYFDLPP----LIAEAPLDFPDALFGLYDEVLVFDHQKGKLYLI--------------- 155
Query: 267 AEGLEHLEKLVARKVITRSIDLHTHHFGPPLK-KSNMTSEAYKNAVLEAKEHIQAGDIFQ 325
A G E LE+L+AR L P + +SN+ EAY+ AV +AKE+I+AGDI+Q
Sbjct: 156 AFGAERLEQLLARL-EDALAPLPEGDPPLPREVQSNLDREAYEEAVRKAKEYIRAGDIYQ 214
Query: 326 IVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNR 385
+VLS+RFE DP +YR LR NPSPYM +L+ LV +SPE+ +V N+I R
Sbjct: 215 VVLSRRFEAPCDGDPLALYRRLRQRNPSPYMFFLRLGDFTLVGASPELFVKVDGNRIETR 274
Query: 386 PLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNV 445
P+AGT RG EEDE LE +LL D K+ AEH+MLVDL RND+G+V GSVKV +LM V
Sbjct: 275 PIAGTRPRGADPEEDEALEAELLNDEKERAEHLMLVDLARNDLGRVCEPGSVKVPELMEV 334
Query: 446 ERYSHVMHISSTVS 459
ERYSHVMH+ STV+
Sbjct: 335 ERYSHVMHLVSTVT 348
>gnl|CDD|237431 PRK13570, PRK13570, anthranilate synthase component I; Provisional.
Length = 455
Score = 327 bits (840), Expect = e-108
Identities = 149/374 (39%), Positives = 207/374 (55%), Gaps = 31/374 (8%)
Query: 88 PLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVI 147
+ + I D LTP+ AY L + FL ES+ R GRYS++ PV E+
Sbjct: 5 RVIKEINGDTLTPISAYMRLKGKH-----KFLLESIP---RDKEKGRYSIIAYNPVFEIK 56
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
+ I + EK + DP++ ++ K Q+ ELP FCGG +GY YD +
Sbjct: 57 SYGGELYIGNGEK------IDGDPLDFLEEVIV--KSQVDSELP--FCGGAIGYVGYDVI 106
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSS--VQKA 265
R E + P D + D+H LY +++DH ++K+ ++ R S ++KA
Sbjct: 107 RLYEN--IG--DIPEDTIGIPDMHFFLYESFIIYDHKKEKLIFVYDNRYSDRSEEELEKA 162
Query: 266 YAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQ 325
LE L++ + I+L F KSN+T E + V +AKE+I+AGDIFQ
Sbjct: 163 LNVVLEELKQPA--EAEHELIELSKLSF-----KSNITKEEFCGMVEKAKEYIRAGDIFQ 215
Query: 326 IVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNR 385
+VLSQR DPF+ YR LRV NPSPY+ Y+ ++ SSPE L VK +K+
Sbjct: 216 VVLSQRLSAEFTGDPFDYYRKLRVTNPSPYLYYIDFGDYQVIGSSPESLVSVKGDKVTTN 275
Query: 386 PLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNV 445
P+AGT RG+T EEDE L +LL D K+ AEH MLVDLGRND+GK++ +GSVKV K M V
Sbjct: 276 PIAGTRPRGKTKEEDEALAKELLSDEKERAEHRMLVDLGRNDIGKISETGSVKVTKYMEV 335
Query: 446 ERYSHVMHISSTVS 459
E+Y HVMH+ S VS
Sbjct: 336 EKYRHVMHLVSEVS 349
>gnl|CDD|184146 PRK13565, PRK13565, anthranilate synthase component I; Provisional.
Length = 490
Score = 316 bits (811), Expect = e-103
Identities = 160/379 (42%), Positives = 204/379 (53%), Gaps = 26/379 (6%)
Query: 85 NLVPLYRCIFSDHLTPVVAYRCLVQEDDREAP-SFLFESVEPGVRVSNVGRYSVVG--AQ 141
N +PL +D TP+ Y L AP S+L ESV G R GRYS +G A+
Sbjct: 15 NRIPLVAEALADLDTPLSLYLKLAD-----APYSYLLESVVGGERF---GRYSFIGLPAR 66
Query: 142 PVMEVIVKDNNVTIMDHEKGSLVEEV-VDDPMEIPRKISEDWKPQIIDELPEAFCGGWVG 200
V+ V V G +VE V DP+ +K + LP FCGG VG
Sbjct: 67 TVLRVRGHTVEVV----TDGQVVETHDVGDPLAFIEAFQARFKVALRPGLPR-FCGGLVG 121
Query: 201 YFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHS 260
YF YDTVRY+E + A D DI L L ++ V D++ K+Y+I V D
Sbjct: 122 YFGYDTVRYIEPRLAN--TAKPDPLGTPDILLLLSEELAVIDNLSGKLYLI--VYAD--P 175
Query: 261 SVQKAYAEGLEHLEKLVARKVITRSIDL-HTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQ 319
+ +AY + L +L AR + + + T S T E Y AV +AKE+I
Sbjct: 176 AQPEAYERAKQRLRELRAR--LRQPVAPPVTSASSRTEFVSEFTKEDYLAAVRKAKEYIA 233
Query: 320 AGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKK 379
AGD Q+V SQR + A P +YRALR +NPSPYM + +V SSPEIL R +
Sbjct: 234 AGDCMQVVPSQRLSKPFRASPLSLYRALRSLNPSPYMYFYNFGDFHVVGSSPEILVRQED 293
Query: 380 NKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKV 439
+ RP+AGT RG T EED LET+LL D K+ AEHVML+DLGRNDVG+VA +GSVKV
Sbjct: 294 RIVTVRPIAGTRPRGATPEEDLALETELLADPKEIAEHVMLIDLGRNDVGRVAETGSVKV 353
Query: 440 EKLMNVERYSHVMHISSTV 458
+ M +ERYSHVMHI S V
Sbjct: 354 TEKMVIERYSHVMHIVSNV 372
>gnl|CDD|233586 TIGR01820, TrpE-arch, anthranilate synthase component I, archaeal
clade. This model represents an archaeal clade of
anthranilate synthase component I enzymes. This enzyme
is responsible for the first step of tryptophan
biosynthesis from chorismate. The Sulfolobus enzyme has
been reported to be part of a gene cluster for Trp
biosynthesis [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 435
Score = 282 bits (724), Expect = 6e-91
Identities = 142/363 (39%), Positives = 183/363 (50%), Gaps = 38/363 (10%)
Query: 100 PVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHE 159
P+ Y+ + + D +FL ES E + S RYS +G P V + +
Sbjct: 1 PLELYKAIRADGDY---AFLLESAE---KPSKKARYSFIGWDPEFVVRI---------NG 45
Query: 160 KGSLVE--EVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVR-YVEKKKLP 216
KG VE D ++ R K I F GG VGY +YD VR Y E
Sbjct: 46 KGKSVEGIPEDGDVVDKLRNAFPKLKGINIPGEDRRFKGGLVGYIAYDAVRDYWEGIVDL 105
Query: 217 FSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKL 276
KA +Y + +V+DH+E KVY + + E LE++
Sbjct: 106 KRKAE----DWPPAEFFIYPNTIVYDHLEGKVYYV-------------STPEPEAELERI 148
Query: 277 VARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRT 336
V R R+ D + + E ++ AV EAKE+I AGDIFQ+VLS+ +E R
Sbjct: 149 VER--AKRATDPGEAGVSFEGESLSDREE-FEEAVEEAKEYIFAGDIFQVVLSREYEYRL 205
Query: 337 FADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRT 396
DPFE+Y LR +NPSPYM L+ LV SSPE L RV+ + P+AGT RG T
Sbjct: 206 DGDPFELYYNLREINPSPYMFLLKFGDRYLVGSSPETLVRVEGRTVETNPIAGTRPRGAT 265
Query: 397 TEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISS 456
EEDE L +LL D K+ AEHVMLVDL RNDV KV+ GSVKV + M VE+YSHV HI S
Sbjct: 266 PEEDERLAKELLSDEKERAEHVMLVDLARNDVRKVSEPGSVKVPEFMYVEKYSHVQHIES 325
Query: 457 TVS 459
TV
Sbjct: 326 TVI 328
>gnl|CDD|184150 PRK13569, PRK13569, anthranilate synthase component I; Provisional.
Length = 506
Score = 282 bits (723), Expect = 5e-90
Identities = 136/402 (33%), Positives = 202/402 (50%), Gaps = 32/402 (7%)
Query: 70 LASDASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRV 129
+D + F E S +P+ F+D LTP+ L ++ EA +L ES +
Sbjct: 2 SQTDFTSFLEDSNEFRTIPIVETFFADTLTPIQ----LFEKLQDEA-VYLLESKD---DE 53
Query: 130 SNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIID- 188
S RYS +G P + + ++ + D L E + + + + ++
Sbjct: 54 SPWSRYSFIGLNPFLTLEEENGTFSAKDENGNELAT--APTLKEAFQWMEQTLDVKPLEL 111
Query: 189 ELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPH-DDRSLADIHLGLYNDVLVFDHVEKK 247
++P F GG VGY SYD + +EK H D + H ++ +DH K+
Sbjct: 112 DIP--FTGGAVGYLSYDAISLIEK-----VPKHHSRDTEMPTCHFFFCETLIAYDHETKE 164
Query: 248 VYVIHWVRLDQHSSVQK---AYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKK----- 299
++ IH+VRL+ + ++ Y E +E L+ + + R ++
Sbjct: 165 LHFIHYVRLNGQETEEEKIEKYKEAQAEIETLIEK--LARRKAEKELLLPADSERTVSFE 222
Query: 300 ---SNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYM 356
SN E + V + KE+I+AGDIFQ VLSQRFE FE+YR LR+VNPSPYM
Sbjct: 223 GVTSNYEKEQFLRDVEKIKEYIKAGDIFQAVLSQRFEIPVSVGGFELYRVLRMVNPSPYM 282
Query: 357 TYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAE 416
Y++ +V SSPE L +V + P+AGT RRG EEDE L +LL D K+ AE
Sbjct: 283 FYMKLDDVEIVGSSPERLIQVHNRHLEIHPIAGTRRRGADAEEDERLAKELLADEKERAE 342
Query: 417 HVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
H MLVDL RND+G+VA GSV+V L+ + ++SHVMH+ S V
Sbjct: 343 HYMLVDLARNDIGRVAEYGSVEVPVLLEIGKFSHVMHLISKV 384
>gnl|CDD|184152 PRK13571, PRK13571, anthranilate synthase component I; Provisional.
Length = 506
Score = 265 bits (680), Expect = 1e-83
Identities = 149/412 (36%), Positives = 206/412 (50%), Gaps = 36/412 (8%)
Query: 62 TATAPATKLASDASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFE 121
A AT + F + +VP+ R + +D TPV AYR L +FL E
Sbjct: 1 MADGAAT---TSREDFRALAAEHRVVPVTRKVLADSETPVGAYRKLAAN---RPGTFLLE 54
Query: 122 SVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVV--DDPMEIPRKIS 179
S E G S R+S +G + V+D G+ DP+ R
Sbjct: 55 SAENGRSWS---RWSFIGVGSPAALTVRDGEA----VWLGTPPAGAPTGGDPLAALRATL 107
Query: 180 EDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVL 239
E + LP GG VG+ YD VR +E+ LP + DD L ++ L L D+
Sbjct: 108 ELLATPRLPGLP-PLTGGMVGFLGYDAVRRLER--LP--ELAVDDLGLPEMLLLLATDLA 162
Query: 240 VFDHVEKKVYVI----HWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGP 295
DH E + +I +W D+ V AY + + L+ + A + + + F
Sbjct: 163 AVDHHEGTITLIANAVNWNGTDER--VDAAYDDAVARLDVMTAA--LAQPLPSTVATFSR 218
Query: 296 PLK--KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPS 353
P+ ++ T E + AV + E I+AG+ FQ+V SQRFE T ADP +VYR LRV NPS
Sbjct: 219 PVPEFRAQRTVEEFGAAVEKLVEEIRAGEAFQVVPSQRFEMDTTADPLDVYRVLRVTNPS 278
Query: 354 PYMTYLQ------ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQL 407
PYM L+ +V SSPE L V + P+AGT RG T EED +LE +L
Sbjct: 279 PYMYLLRVPNSDGGTDFSIVGSSPEALVTVTDGRATTHPIAGTRWRGATPEEDALLEKEL 338
Query: 408 LKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
L D K+ AEH+MLVDLGRND+G+V R G+V+V ++ERYSHVMH+ STV+
Sbjct: 339 LADPKERAEHLMLVDLGRNDLGRVCRPGTVRVVDFSHIERYSHVMHLVSTVT 390
>gnl|CDD|184154 PRK13573, PRK13573, anthranilate synthase component I; Provisional.
Length = 503
Score = 256 bits (656), Expect = 4e-80
Identities = 144/396 (36%), Positives = 200/396 (50%), Gaps = 21/396 (5%)
Query: 70 LASDASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPG-VR 128
L D F A +Y + +D TPV L +F+ ESV G VR
Sbjct: 3 LTPDFDAFERAYDAGENQVVYTRLAADLDTPVSLMLKLA---GARKDAFMLESVTGGEVR 59
Query: 129 VSNVGRYSVVGAQP--VMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQI 186
GRYS++G +P + + + E + P++ R + + + +
Sbjct: 60 ----GRYSIIGMKPDLIWRCRGQQARINREARFDRDAFEPLEGHPLDSLRALIAESRIDM 115
Query: 187 IDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEK 246
+LP A G GY YD +R VE LP D L D L + V V D V+
Sbjct: 116 PADLPPA-AAGLFGYLGYDMIRLVEH--LP--DVNPDPLGLPDAVLMRPSVVAVLDGVKG 170
Query: 247 KVYVIHWVRLDQHSSVQKAYAEGLEHLEKLV---ARKVITRSIDL-HTHHFGPPLKKSNM 302
+V V+ + S + AYA+ E + V R + D G P SN
Sbjct: 171 EVTVVAPAWVSSGLSARAAYAQAAERVMDAVRDLERALPAAQRDFGEAAQVGEP--VSNF 228
Query: 303 TSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQAR 362
T E YK AV +AK++I+AGDIFQ+V SQR+ + PF +YR+LR NPSP+M +
Sbjct: 229 THEGYKAAVEKAKDYIRAGDIFQVVPSQRWAQDFRLPPFALYRSLRRTNPSPFMFFFNFG 288
Query: 363 GCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVD 422
G +V +SPEIL R++ ++ RP+AGT RG T EED LE LL D K+ AEH+ML+D
Sbjct: 289 GFQVVGASPEILVRLRDGEVTIRPIAGTRPRGATPEEDRALEADLLADKKELAEHLMLLD 348
Query: 423 LGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
LGRNDVG+VA+ G+V+ + +ERYSHVMHI S V
Sbjct: 349 LGRNDVGRVAKIGTVRPTEKFIIERYSHVMHIVSNV 384
>gnl|CDD|237432 PRK13572, PRK13572, anthranilate synthase component I; Provisional.
Length = 435
Score = 213 bits (543), Expect = 4e-64
Identities = 128/364 (35%), Positives = 184/364 (50%), Gaps = 46/364 (12%)
Query: 96 DHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTI 155
D++ P+ Y L E F+ ES E G R + RY+ + A P E +V+ N T
Sbjct: 7 DYVNPLKLYSVLRDEGY----PFILESAEKGQRKA---RYTYISANP--EFMVRIGNKTK 57
Query: 156 MDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVR-YVEKKK 214
+D E S E + + F GG+VGY +YD V Y+ K
Sbjct: 58 VDGETISKESNPFKALKENFKITQSG----------DRFTGGFVGYIAYDAVHNYIGGKI 107
Query: 215 LPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLE 274
S G Y+ V V+DHV +K Y S+ E L + E
Sbjct: 108 EEPSV------------FGYYDHVFVYDHVTRKFYFH---------SLNNN-PEELFNAE 145
Query: 275 KLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFER 334
K+V + + ++ G + + E + V +AKE+I +GD+FQ+VLS+ +
Sbjct: 146 KIVEK---AKRFEIEEEDGGSEVLGCDADREEFVEMVEKAKEYIYSGDVFQVVLSREYRL 202
Query: 335 RTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRG 394
+T PF++YR LR +NPSPYM +L +V +SPE + V+ N + P+AGT RG
Sbjct: 203 KTDLSPFQLYRNLREINPSPYM-FLLEFDKDVVGASPETMASVENNILKINPIAGTAPRG 261
Query: 395 RTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHI 454
+T EED+ L LL D K+ AEHVMLVDL RNDV KV++SGSV++E+ +V +YSHV HI
Sbjct: 262 KTEEEDKKLAEALLSDEKERAEHVMLVDLARNDVRKVSKSGSVRLERFFDVVKYSHVQHI 321
Query: 455 SSTV 458
S V
Sbjct: 322 ESEV 325
>gnl|CDD|235651 PRK05940, PRK05940, anthranilate synthase component I-like protein;
Validated.
Length = 463
Score = 206 bits (526), Expect = 2e-61
Identities = 103/283 (36%), Positives = 159/283 (56%), Gaps = 35/283 (12%)
Query: 184 PQIIDELPEAFCGGWVGYFSYDTVRYVEK------KKLPFSKAP-HDDRSLADIHLGLYN 236
+ + LP F GGW+G+ YD +E+ LPF A ++ S A
Sbjct: 88 SALPEHLP--FTGGWLGWLGYDLAWEIERLPHLNPDPLPFPVAYWYEPESFA-------- 137
Query: 237 DVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPP 296
+ DH E+ +++ + L+ LE+ + + T DL PP
Sbjct: 138 ---ILDHQEQILWL------------AASDPSQLDRLEQQLEQP--TPEPDLPLDLRTPP 180
Query: 297 LKKSNMTSE-AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPY 355
T++ Y+ AV +AK++IQAGDIFQ LS RF+ T AD +++YR L+ +NPSP+
Sbjct: 181 SSLIFYTTQQEYEAAVRQAKKYIQAGDIFQANLSLRFQTTTSADSWQIYRRLQQINPSPF 240
Query: 356 MTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCA 415
+Y + +V+ SPE L +++ N+ RP+AGT RG+T ED+ L +LL + K+ A
Sbjct: 241 ASYWRTPWGDVVSCSPERLVQLQGNQAQTRPIAGTRPRGKTPAEDQQLAEELLSNIKERA 300
Query: 416 EHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
EH+MLVDL RND+G+V + GSV+V++L+ +ERYSHV+H+ S V
Sbjct: 301 EHIMLVDLERNDLGRVCQWGSVEVDELLTIERYSHVIHLVSNV 343
>gnl|CDD|184148 PRK13567, PRK13567, anthranilate synthase component I; Provisional.
Length = 468
Score = 203 bits (517), Expect = 5e-60
Identities = 110/338 (32%), Positives = 169/338 (50%), Gaps = 26/338 (7%)
Query: 133 GRYSVVGAQPVMEVIVKDNNVTI-MDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELP 191
GRYSVV + + ++ +++ E + E + + + + + LP
Sbjct: 37 GRYSVVIFDIYGTLTLDNDVLSVSTLKESYQITERPYHYLTTKINEDYHNIQDEQLKSLP 96
Query: 192 EAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVI 251
F G+VG S+D VR+ E KL +D D+ L + V VFDH + ++Y+I
Sbjct: 97 --FISGYVGTCSFDLVRH-EFPKL--QSIQLEDHKQHDVRLYMVEQVYVFDHYKDELYII 151
Query: 252 HWVRLDQHSSVQKAYAEGLEHLEKLVARKV-----ITRSIDLHTHHFGPPLKKSNMTSEA 306
+Q S+ K LE V + + I + F +SN++ E
Sbjct: 152 ---ATNQFSNSTK------SDLENRVNKSIEDLTKIQPFMPTQDFDFKTKEIQSNISEER 202
Query: 307 YKNAVLEAKEHIQAGDIFQIVLSQRFE-RRTFAD-----PFEVYRALRVVNPSPYMTYLQ 360
+ + KE I GD+FQ+V S+ ++ + F++Y+ L+ NPSPYM YL
Sbjct: 203 FIEMIQYFKEKITEGDMFQVVPSRIYKYAHHASQHLNQLSFQLYQNLKRQNPSPYMYYLN 262
Query: 361 ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVML 420
+V SSPE VK + P+AGT++RG TT+ D QLL D K+C+EH ML
Sbjct: 263 IDQPYIVGSSPESFVSVKDQIVTTNPIAGTIQRGETTQIDNENMKQLLNDPKECSEHRML 322
Query: 421 VDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
VDLGRND+ +V++ G+ K+ KLM +E+Y HVMHI S V
Sbjct: 323 VDLGRNDIHRVSKIGTSKITKLMVIEKYEHVMHIVSEV 360
>gnl|CDD|184155 PRK13574, PRK13574, anthranilate synthase component I; Provisional.
Length = 420
Score = 200 bits (510), Expect = 1e-59
Identities = 120/360 (33%), Positives = 171/360 (47%), Gaps = 61/360 (16%)
Query: 100 PVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHE 159
P ++C+ ++ L ES+ RYSV+
Sbjct: 12 PFEVFKCIERDFKVAG---LLESIGGP---QYKARYSVIAWG-----------------T 48
Query: 160 KGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSK 219
G L ++ DDP+ I ++ K + ++P F GG +GY SYD VR+ EK +
Sbjct: 49 NGYL--KIHDDPVNI---LNSYLKDLKLVDIPGLFKGGMIGYISYDAVRFWEKIR-DLKP 102
Query: 220 APHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVAR 279
A D + ++++++DH E KVYV G
Sbjct: 103 AAED---WPYAEFFIPDNIIIYDHNEGKVYV-----------------NG---------- 132
Query: 280 KVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTF-A 338
+ + F ++ Y+ V E+ E+I++G IFQ+VLS RF R F
Sbjct: 133 DLSSVGGCGDMGEFKISFYDESLNKNNYEKIVSESLEYIRSGYIFQVVLS-RFYRYLFSG 191
Query: 339 DPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTE 398
DP +Y LR +NPSPYM YL+ L+ SSPE+L RV+ N + P+AGT RG E
Sbjct: 192 DPLRIYYNLRRINPSPYMFYLKFDERYLIGSSPELLFRVQDNIVETYPIAGTRPRGSDQE 251
Query: 399 EDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
ED LE +L+ K AEH+MLVDL RND+GKV G+V+V +LM VE+YSHV HI S V
Sbjct: 252 EDLKLELELMNSEKDKAEHLMLVDLARNDLGKVCVPGTVRVPELMYVEKYSHVQHIVSKV 311
>gnl|CDD|215913 pfam00425, Chorismate_bind, chorismate binding enzyme. This family
includes the catalytic regions of the chorismate binding
enzymes anthranilate synthase, isochorismate synthase,
aminodeoxychorismate synthase and para-aminobenzoate
synthase.
Length = 254
Score = 186 bits (474), Expect = 5e-56
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 5/157 (3%)
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRT--FADPFEVYRALRVVNPSPYMTYLQAR 362
E Y AV +AKE I+AGD++++VLS+R E DP +YR LR NP+PY L+
Sbjct: 3 EDYAAAVEKAKEAIRAGDLYKVVLSRRLELPLSSPIDPLALYRRLRARNPAPYAFLLELG 62
Query: 363 GCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVD 422
+ +SPE L V+ +I RPLAGT RG EEDE L +LL K+ AEH+M+VD
Sbjct: 63 D--FLGASPERLLSVRGGRITTRPLAGTRPRGEDPEEDEALAAELLASEKERAEHLMVVD 120
Query: 423 LGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
L RND+G+V + GSVKV +L VERY +V H+ ST++
Sbjct: 121 LIRNDLGRVCK-GSVKVPELPEVERYGNVQHLVSTIT 156
>gnl|CDD|130883 TIGR01824, PabB-clade2, aminodeoxychorismate synthase, component I,
clade 2. This clade of sequences is more closely
related to TrpE (anthranilate synthase,
TIGR00564/TIGR01820/TIGR00565) than to the better
characterized group of PabB enzymes
(TIGR00553/TIGR01823). This clade includes one
characterized enzyme from Lactococcus and the conserved
function across the clade is supported by these pieces
of evidence: 1) all genomes with a member in this clade
also have a separate TrpE gene, 2) none of these genomes
contain an aparrent PabB from any of the other PabB
clades, 3) none of these sequences are found in a region
of the genome in association with other Trp biosynthesis
genes, 4) all of these genomes aparrently contain most
if not all of the steps of the folate biosynthetic
pathway (for which PABA is a precursor). Many of the
sequences hit by this model are annotated as TrpE
enzymes, however, we believe that all members of this
clade are, in fact, PabB. The sequences from Bacillus
halodurans and subtilus which score below the trusted
cutoff for this model are also likely to be PabB
enzymes, but are too closely related to TrpE to be
separated at this time.
Length = 355
Score = 182 bits (463), Expect = 2e-53
Identities = 87/271 (32%), Positives = 124/271 (45%), Gaps = 27/271 (9%)
Query: 196 GGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIH--- 252
GG +G+ +YD R +E D Y + DH + V +
Sbjct: 1 GGRLGWLAYDVARRLE----GIPDLGTSDGGWPVAADFRYEAAVARDHQRQIVALATVPA 56
Query: 253 -WVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTS--EAYKN 309
SS Q L + GP + AY+
Sbjct: 57 ETEGEFATSSDQLPAVAAATSLP---------------SPDVGPLPVDLEASIDRAAYET 101
Query: 310 AVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYMTYLQARGCILV 367
V K++I+AGD+FQ LS+R A DP +++ ALR NP+PY YL+ G +
Sbjct: 102 GVRRIKDYIRAGDVFQANLSRRLTAPIAADVDPLQLFLALRAPNPAPYAIYLEEPGVDVA 161
Query: 368 ASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRND 427
++SPE+ + + RP+AGT RG T ED L +LL+ K AEHVM+VDL RND
Sbjct: 162 SASPELFLAREGRVVQTRPIAGTRPRGATLAEDGALAAELLQHDKDRAEHVMIVDLERND 221
Query: 428 VGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
+G+V +G+V+V +L VE YSHV H+ S V
Sbjct: 222 LGRVCATGTVRVPELCAVESYSHVHHLVSRV 252
>gnl|CDD|237428 PRK13564, PRK13564, anthranilate synthase component I; Provisional.
Length = 520
Score = 166 bits (424), Expect = 4e-46
Identities = 94/300 (31%), Positives = 131/300 (43%), Gaps = 57/300 (19%)
Query: 185 QIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRS------LADIHLGLYNDV 238
E EA G G F+YD V E P + P + LA+ +
Sbjct: 135 NTPKEEREALFLG--GLFAYDLVAGFE----PLPQLPAGNNCPDYCFYLAET-------L 181
Query: 239 LVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLK 298
LV DH +K + ++ A L L++ + P
Sbjct: 182 LVIDHQKKSA-RLQASLFTPDEEEKQRLAARLAQLKQQLT----------QPAPPLPVTS 230
Query: 299 KSNMT------SEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTF----ADPFEVYRALR 348
+M E + V + KEHI+AGDIFQ+V S R F P YR L+
Sbjct: 231 VPDMEVSVNISDEEFCAVVRKLKEHIRAGDIFQVVPS-----RRFSLPCPSPLAAYRVLK 285
Query: 349 VVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNR----PLAGTVRRGRTT------E 398
NPSPYM Y+Q L +SPE + +K + + P+AGT RGR +
Sbjct: 286 KSNPSPYMFYMQDEDFTLFGASPE--SALKYDASSRQVEIYPIAGTRPRGRRADGSIDRD 343
Query: 399 EDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
D +E +L D K+ AEH+MLVDL RND+ ++ + GS V L+ V+RYSHVMH+ S V
Sbjct: 344 LDSRIELELRTDHKELAEHLMLVDLARNDLARICQPGSRYVADLLKVDRYSHVMHLVSRV 403
>gnl|CDD|233020 TIGR00553, pabB, aminodeoxychorismate synthase, component I,
bacterial clade. Members of this family,
aminodeoxychorismate synthase, component I (PabB), were
designated para-aminobenzoate synthase component I until
it was recognized that PabC, a lyase, completes the
pathway of PABA synthesis. This family is closely
related to anthranilate synthase component I (trpE), and
both act on chorismate. The clade of PabB enzymes
represented by this model includes sequences from
Gram-positive and alpha and gamma Proteobacteria as well
as Chlorobium, Nostoc, Fusobacterium and Arabidopsis. A
closely related clade of fungal PabB enzymes is
identified by TIGR01823, while another bacterial clade
of potential PabB enzymes is more closely related to
TrpE (TIGR01824) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Folic acid].
Length = 328
Score = 158 bits (401), Expect = 1e-44
Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 36/262 (13%)
Query: 198 WVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLD 257
VGY SY+ D Y+ L+ DH +R
Sbjct: 1 LVGYLSYEAGP--------------------DAAFEPYDAALLADHRRT-----PLLRFL 35
Query: 258 QHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEH 317
V+ +E + A +S MT Y A+ + +++
Sbjct: 36 VFERVEAQPRAAVEAEDDAPAD---------RQAPTSDI--QSEMTRAEYGEAIDQLQDY 84
Query: 318 IQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRV 377
I+AGD +Q L+Q+F DP +R LR P+P+ +L +++ SPE+ +
Sbjct: 85 IRAGDCYQANLTQQFHATWDGDPLAAFRKLRRRQPAPFSAFLDLGDGAILSLSPELFFSI 144
Query: 378 KKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSV 437
++I RP+ GT+ RG +ED + L + AK AE++M+VDL RND+G++A GSV
Sbjct: 145 DGSEIETRPIKGTLPRGADPQEDRAQASALAESAKDRAENLMIVDLLRNDLGRIAEVGSV 204
Query: 438 KVEKLMNVERYSHVMHISSTVS 459
KV +L VE Y V + ST++
Sbjct: 205 KVPELFVVETYPTVHQLVSTIT 226
>gnl|CDD|236371 PRK09070, PRK09070, hypothetical protein; Validated.
Length = 447
Score = 156 bits (397), Expect = 7e-43
Identities = 98/346 (28%), Positives = 152/346 (43%), Gaps = 37/346 (10%)
Query: 118 FLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRK 177
L ES G + GR+ V+ + + D + +G ++ + D + R
Sbjct: 26 ALLESSASG---TAQGRWDVLLLAQ-GKCLRLDPDGVTRQLLEGDFLDAL-DAAWQAERV 80
Query: 178 ISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAP-HDDRSLADIHLGLYN 236
+ LP F GGW Y+ VE P K P D + L
Sbjct: 81 PHDGE-----SSLP--FRGGWAVLLDYELAGQVE----PILKLPMRTDGLPLALALRAPA 129
Query: 237 DVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPP 296
VL D + ++ + L+ +E +A + + P
Sbjct: 130 AVLR-DRHSGRCVLV----------AEPGREHLLDQIEADLAACAALPPLPVWL----AP 174
Query: 297 LKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA---DPFEVYRALRVVNPS 353
E + + V ++I+AGD+FQ+ LS+ + + FA DP +Y LR NP+
Sbjct: 175 QAVEEDPPERFTDGVERVLDYIRAGDVFQVNLSRAW-QAQFANAVDPAALYARLRAANPA 233
Query: 354 PYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQ 413
P+ A G +V+SSPE L V+ + RP+AGT R ++D L +L+ K+
Sbjct: 234 PFSGLFVAAGRAIVSSSPERLVSVQGGVVQTRPIAGTRPRF-AGDDDAALIRELVGHPKE 292
Query: 414 CAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
AEHVML+DL RND+G++ GSV+V++LM VE Y+HV HI S V
Sbjct: 293 RAEHVMLIDLERNDLGRICAPGSVEVDELMTVESYAHVHHIVSNVR 338
>gnl|CDD|185362 PRK15465, pabB, aminodeoxychorismate synthase subunit I;
Provisional.
Length = 453
Score = 140 bits (355), Expect = 4e-37
Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 29/328 (8%)
Query: 134 RYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKI--SEDWKPQIIDELP 191
R+ +V A P+ + + + EK DDP+++ +++ D +P ++LP
Sbjct: 45 RFDIVVADPICTLTTFGKETVVSESEK---RTTTTDDPLQVLQQVLDRADIRPTHNEDLP 101
Query: 192 EAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVI 251
F GG +G F YD R E LP + D L D+ +G+Y+ L+ DH + V ++
Sbjct: 102 --FQGGALGLFGYDLGRRFES--LP--EIAEQDIVLPDMAVGIYDWALIVDHQRQTVSLL 155
Query: 252 HWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAV 311
++ + L +++ + T + +SNMT E Y
Sbjct: 156 -------------SHNDVNARRAWLESQQFSPQEDFTLTSDW-----QSNMTREQYGEKF 197
Query: 312 LEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSP 371
+ +E++ +GD +Q+ L+QRF D ++ + L N +P+ +L+ +++ SP
Sbjct: 198 RQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSP 257
Query: 372 EILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKV 431
E ++I RP+ GT+ R +ED +L AK AE++M+VDL RND+G+V
Sbjct: 258 ERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRV 317
Query: 432 ARSGSVKVEKLMNVERYSHVMHISSTVS 459
A +GSVKV +L VE + V H+ ST++
Sbjct: 318 AVAGSVKVPELFVVEPFPAVHHLVSTIT 345
>gnl|CDD|129656 TIGR00565, trpE_proteo, anthranilate synthase component I,
proteobacterial subset. This enzyme resembles some
other chorismate-binding enzymes, including
para-aminobenzoate synthase (pabB) and isochorismate
synthase. There is a fairly deep split between two sets,
seen in the pattern of gaps as well as in amino acid
sequence differences. This group includes proteobacteria
such as E. coli and Helicobacter pylori but also the
gram-positive organism Corynebacterium glutamicum. The
second group includes eukaryotes, archaea, and most
other bacterial lineages; sequences from the second
group may resemble pabB more closely than other trpE
from this group [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 498
Score = 138 bits (348), Expect = 9e-36
Identities = 88/275 (32%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 200 GYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQH 259
G FSYD V E LP KA + + D L ++V DH +K
Sbjct: 131 GLFSYDLVAGFED--LPHLKA--KNNNCPDFCFYLAETLIVIDHQKKST----------- 175
Query: 260 SSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLK------KSNMTSEAYKNAVLE 313
+Q + ++L AR + P + N + + V
Sbjct: 176 -RIQASCFAERFEKQRLQARLDLLEQQKTIKADPVPVKSVPSMEVECNQSDSEFGGVVRS 234
Query: 314 AKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEI 373
++ I+AG+IFQ+V S+RF P Y L+ NPSPYM Y+Q IL +SPE
Sbjct: 235 LQKAIRAGEIFQVVPSRRFSLPC-PSPLAAYYVLKKSNPSPYMFYMQDNDFILFGASPE- 292
Query: 374 LTRVKKNKIVNR----PLAGTVRRGRTT------EEDEMLETQLLKDAKQCAEHVMLVDL 423
+ +K + + + P+AGT RGR + D +E L D K+ AEH+MLVDL
Sbjct: 293 -SALKYDALSRQIEIYPIAGTRPRGRDADGNIDRDLDSRIELDLRTDHKELAEHLMLVDL 351
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
RND+ +V GS V L V+RYS+VMH+ S V
Sbjct: 352 ARNDLARVCTPGSRYVADLTKVDRYSYVMHLVSRV 386
>gnl|CDD|218224 pfam04715, Anth_synt_I_N, Anthranilate synthase component I, N
terminal region. Anthranilate synthase (EC:4.1.3.27)
catalyzes the first step in the biosynthesis of
tryptophan. Component I catalyzes the formation of
anthranilate using ammonia and chorismate. The catalytic
site lies in the adjacent region, described in the
chorismate binding enzyme family (pfam00425). This
region is involved in feedback inhibition by tryptophan.
This family also contains a region of Para-aminobenzoate
synthase component I (EC 4.1.3.-).
Length = 141
Score = 128 bits (324), Expect = 1e-35
Identities = 59/156 (37%), Positives = 78/156 (50%), Gaps = 16/156 (10%)
Query: 96 DHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTI 155
D LTPV + L E +FL ES E G GRYS +G P+ + K +
Sbjct: 1 DSLTPVELFLRLRGEGH----AFLLESAEGGE-----GRYSFIGLDPLATIKAKGGETEL 51
Query: 156 MDHEKGSLVEEVVDDPMEIPRKISEDWK-PQIIDELPEAFCGGWVGYFSYDTVRYVEKKK 214
D E L+ DP + R++ ++ P+ D F GG VGYF YD VRY+E K
Sbjct: 52 SDDEGERLIAG---DPFDALRELLARFRIPEAPDPGLPPFSGGLVGYFGYDLVRYLE-PK 107
Query: 215 LPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYV 250
LP AP D L D GLY+ +LVFDH E+K+ +
Sbjct: 108 LPD--APDDLNELPDAVFGLYDTLLVFDHQEQKLTL 141
>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
Length = 918
Score = 131 bits (330), Expect = 1e-32
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 33/287 (11%)
Query: 188 DELPEAFCGGWVGYFSYDTVRYVEKKKLPF----SKAPHDDRSLADIHLGLYNDVLVFDH 243
+ LP F GG+VGY YD VE + S P AD +V+V DH
Sbjct: 532 EGLPFDFHGGYVGYIGYDL--KVECG-MASNRHKSTTPDACFFFAD-------NVVVIDH 581
Query: 244 VEKKVYVIHWVRLDQHSSVQKAYAEGLE----HLEKLVARKVITRSIDLHTHHFGPPLKK 299
VY++ L + S+ + + E L+ RK+ ++ T P K
Sbjct: 582 HYDDVYIL---SLHEGSTATTQWLDDTEQKLLGLKASATRKLEVQTSPTATF---SPSKA 635
Query: 300 S---NMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTF-ADPFEVYRALRVVNPSPY 355
+ + E Y V + ++I+ G+ +++ L+ + +R D +Y LR NP+PY
Sbjct: 636 GFLADKSREQYIKDVQKCLKYIKDGESYELCLTTQMRKRIGEIDSLGLYLHLREKNPAPY 695
Query: 356 MTYL---QARGCILVASSPEILTRVKKNKIVN-RPLAGTVRRGRTTEEDEMLETQLLKDA 411
+L CI +SSPE ++ +N ++ +P+ GT+ RG T EEDE L+ QL
Sbjct: 696 AAWLNFSNENLCI-CSSSPERFLKLDRNGMLEAKPIKGTIARGSTPEEDEQLKLQLQYSE 754
Query: 412 KQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
K AE++M+VDL RND+G+V GSV V LM+VE Y+ V + ST+
Sbjct: 755 KDQAENLMIVDLLRNDLGRVCEPGSVHVPNLMDVESYTTVHTMVSTI 801
>gnl|CDD|236035 PRK07508, PRK07508, aminodeoxychorismate synthase; Provisional.
Length = 378
Score = 119 bits (300), Expect = 7e-30
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 1/159 (0%)
Query: 302 MTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQA 361
Y HI+AGD +Q L+ + R DP ++ AL P Y +
Sbjct: 109 WDFADYAQRFERLHRHIRAGDCYQANLTFPLDARWGGDPLALFWALAARQPVGYGALVDL 168
Query: 362 RGCILVASSPEILTRVK-KNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVML 420
G ++++ SPE+ RV + I P+ GT RG T ED L LL D K AE+ M+
Sbjct: 169 GGPVILSRSPELFFRVDGEGWIETHPMKGTAPRGATPAEDARLRAALLNDEKNQAENRMI 228
Query: 421 VDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
VDL RND+ +++ GS+ V +L ++E Y V + S V
Sbjct: 229 VDLLRNDISRISEVGSLDVPELFDIETYPTVHQMVSRVR 267
>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 117 bits (296), Expect = 4e-28
Identities = 81/265 (30%), Positives = 120/265 (45%), Gaps = 28/265 (10%)
Query: 197 GWVGYFSYDTVRYVE--KKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWV 254
G G F YD E ++KLP P D R D+ L L +++LV DH + +V
Sbjct: 156 GLYGAFGYDLAFQFEPIEQKLP---RPDDQR---DLVLYLPDEILVVDHYAARAWVD--- 206
Query: 255 RLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEA 314
R + +V EGL T ++ Y V +A
Sbjct: 207 RYE--FAVGGVSTEGLPR---------ETAPSPYKPTT--ARPGFADHAPGEYAALVEKA 253
Query: 315 KEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQ-ARGCILVASSPEI 373
KE + GD+F++V Q F P E++R L+ +NPSPY ++ G LV +SPE+
Sbjct: 254 KESFRRGDLFEVVPGQTFYEPCERSPSEIFRRLKEINPSPYGFFINLGDGEYLVGASPEM 313
Query: 374 LTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVAR 433
RV+ ++ P++GT++RG D +LL K +E M D+ RND +V
Sbjct: 314 FVRVEGRRVETCPISGTIKRGADAIGDAEQIRKLLNSKKDESELTMCTDVDRNDKSRVCE 373
Query: 434 SGSVKVEKLMNVERYSHVMHISSTV 458
GSVKV +E YS ++H TV
Sbjct: 374 PGSVKVIGRRQIEMYSRLIH---TV 395
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 717
Score = 116 bits (293), Expect = 6e-28
Identities = 75/258 (29%), Positives = 110/258 (42%), Gaps = 21/258 (8%)
Query: 197 GWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRL 256
G G F YD E + + P D R D+ L L ++++V D ++ + +
Sbjct: 146 GLYGAFGYDLAFQFEPIRQRLER-PDDQR---DLVLYLPDELVVVDPYAGLARLVAYDFI 201
Query: 257 DQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKE 316
S + G R R PP + Y V AK
Sbjct: 202 TAAGSTEGLECGG---------RDHPYRPDTN-----APP--GCDHAPGEYARLVESAKA 245
Query: 317 HIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQ-ARGCILVASSPEILT 375
+ GD+F++V Q F P V+R L+ +NPSPY ++ RG LV +SPE+
Sbjct: 246 AFRRGDLFEVVPGQTFAEPCEDAPSSVFRRLKAINPSPYEFFVNLGRGEYLVGASPEMFV 305
Query: 376 RVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSG 435
RV ++ P++GT+ RG D +LL AK AE M D+ RND +V G
Sbjct: 306 RVAGRRVETCPISGTIARGADAIGDAAQILRLLNSAKDEAELTMCTDVDRNDKSRVCEPG 365
Query: 436 SVKVEKLMNVERYSHVMH 453
SVKV +E YS ++H
Sbjct: 366 SVKVIGRRQIELYSRLIH 383
>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
clade. This model represents the fungal clade of a
para-aminobenzoate synthesis enzyme,
aminodeoxychorismate synthase, which acts on chorismate
in a pathway that yields PABA, a precursor of folate.
Length = 742
Score = 116 bits (291), Expect = 1e-27
Identities = 91/403 (22%), Positives = 165/403 (40%), Gaps = 62/403 (15%)
Query: 90 YRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVK 149
Y F P + + + P F+ S GRYS++ +
Sbjct: 252 YVKQFEVSEDPKLTFEICNIIRE---PKFVMSSSV------ITGRYSIIALPNSASQVFT 302
Query: 150 DNN---VTIMDHEKGSLVEE----VVDDPMEIPRKISEDW-------KPQIID----ELP 191
T + + + + + ++ S+ W + + ID E+P
Sbjct: 303 HYGAMLKTTVHYWQDTEISYTRLKKCLSGVDSDLDKSQFWITLGKFMENKKIDNPHREIP 362
Query: 192 EAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSL-ADIHLGLYNDVLVFDHVEKKVYV 250
F GG VG Y+ + + + + D+ SL D L N +V DH + K+YV
Sbjct: 363 --FIGGLVGILGYEIGSDLSTQYIACGRCNDDENSLVPDAKLVFINRSIVIDHKQGKLYV 420
Query: 251 IHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHH--FGPPLKKSNMT---SE 305
S+ + LE +L V ++I + P +T E
Sbjct: 421 Q---------SLDNTFPVALEWSGELRDSFVRKKNIKQSLSWPFYLPEEIDFVITFPDKE 471
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTF-------ADPFEVYRALRVVNPSPYMTY 358
Y A ++++ AGD +++ L+ + T + +E+Y+ LR NP+P+ +
Sbjct: 472 DYAKAFKACQDYLHAGDSYEMCLTTQ----TKVVPPAVISPDWEIYQRLRQRNPAPFSGF 527
Query: 359 LQARGCILVASSPEILTRVKKN-KIVNRPLAGTVRRGRTTEEDEMLE--TQLLKDAKQCA 415
+ + I +++SPE V + RP+ GTV++G LE ++LK K+
Sbjct: 528 FRLKHIIFLSTSPEKFLEVGMDTHAKLRPIKGTVKKG----PQMNLEKARRILKTPKEMG 583
Query: 416 EHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
E++M++DL RND+ ++ V VE+LM+VE ++ V + S V
Sbjct: 584 ENLMILDLIRNDLYELVPKNDVHVEELMSVEEHATVYQLVSVV 626
>gnl|CDD|102361 PRK06404, PRK06404, anthranilate synthase component I; Reviewed.
Length = 351
Score = 99 bits (249), Expect = 3e-23
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 9/160 (5%)
Query: 299 KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTY 358
K N + + E E I+AG++ Q+V+S+ FE D E + S Y+ Y
Sbjct: 99 KGNYNDISLSLKIKELIELIRAGEVLQVVISREFEANI--DFKEKLSEFINNDRSRYVFY 156
Query: 359 LQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHV 418
+ +V SSPE + V N I P+AGT +D++L +LL K EH
Sbjct: 157 YRFGKYRVVGSSPENVFTVNGNIINVDPIAGTY-------DDKILSNELLNSEKDKLEHR 209
Query: 419 MLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
ML+DL RND+ K A G++ V+K+M +E +S V H+ S V
Sbjct: 210 MLLDLARNDLSKFADIGTLNVDKVMKIEEFSSVKHLVSQV 249
>gnl|CDD|235634 PRK05877, PRK05877, aminodeoxychorismate synthase component I;
Provisional.
Length = 405
Score = 84.4 bits (209), Expect = 9e-18
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSP-YMTYLQARG 363
A+++ VL E I AG+++Q + +F P + + V +P YL
Sbjct: 142 AAHRDGVLACLEAIAAGEVYQACVCTQFTGTVTGSPLDFFADG-VARTAPARAAYLAGDW 200
Query: 364 CILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ + SPE+ R + + + + P+ GT+ L AK AE++M+VDL
Sbjct: 201 GAVASLSPELFLRRRGSVVTSSPIKGTLPLDADPSA-------LRASAKDVAENIMIVDL 253
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
RND+G+VAR+G+V V +L+ V V H+ STVS
Sbjct: 254 VRNDLGRVARTGTVTVPELLVVRPAPGVWHLVSTVS 289
>gnl|CDD|132533 TIGR03494, salicyl_syn, salicylate synthase. Members of this
protein family are salicylate synthases, bifunctional
enzymes that make salicylate, in two steps, from
chorismate. Members are homologous to anthranilate
synthase component I from Trp biosynthesis. Members
typically are found in gene regions associated with
siderophore or other secondary metabolite biosynthesis.
Length = 425
Score = 81.0 bits (200), Expect = 1e-16
Identities = 68/270 (25%), Positives = 102/270 (37%), Gaps = 40/270 (14%)
Query: 197 GWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRL 256
G VG F + L F+ L + +V ++ +
Sbjct: 81 GQVG-FEFAAHAR----GLQFNAGEWPLLRLF-----VPRTEIVVTEDNVTLFGVS---- 126
Query: 257 DQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKS-----NMTSEAYKNAV 311
A L +LVA T I PL ++ AY+ V
Sbjct: 127 ----------AGERRRLCRLVAEGTTTTQI--------APLPQARAVDTATDPSAYRARV 168
Query: 312 LEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCI-LVASS 370
A I AG +++LS+ D R N +P ++L G I + S
Sbjct: 169 ARAVAEIAAGRYHKVILSRAVPLPFAIDFPATLLLGRRHN-TPVRSFLLRLGGIEALGFS 227
Query: 371 PEILTRVKKN-KIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVG 429
PE++ V+ + K+V PLAGT G E D+ L +LL D+K+ EH + V ++
Sbjct: 228 PELVMSVRADGKVVTEPLAGTRALGGGPEHDKQLRDELLSDSKEIVEHAISVKEAIEELE 287
Query: 430 KVARSGSVKVEKLMNVERYSHVMHISSTVS 459
+V G+V VE M V V H+ STVS
Sbjct: 288 QVCEPGTVVVEDFMTVRERGSVQHLGSTVS 317
>gnl|CDD|235932 PRK07093, PRK07093, para-aminobenzoate synthase component I;
Validated.
Length = 323
Score = 79.1 bits (196), Expect = 3e-16
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 297 LKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYM 356
L+K ++ E Y+ +E IQAG+ + + L+ T E+++A + + Y
Sbjct: 66 LQKEPISFEEYQQGFELVQEEIQAGNSYLLNLTYPTPIETNLSLEEIFQASK----AKYK 121
Query: 357 TYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEML---ETQLLKDAKQ 413
+ + V SPE R++ NKI P+ GT+ D L E +LL D K+
Sbjct: 122 LLFKDQ---FVCFSPEPFVRIEDNKISTYPMKGTI--------DASLPNAEEKLLNDEKE 170
Query: 414 CAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVER 447
AEH +VDL RND+ VA+ +V+V + +++
Sbjct: 171 FAEHATIVDLLRNDLSMVAK--NVRVTRFRYIDK 202
>gnl|CDD|233014 TIGR00543, isochor_syn, isochorismate synthases. This enzyme
interconverts chorismate and isochorismate. In E. coli,
different loci encode isochorismate synthases for the
pathways of menaquinone biosynthesis and enterobactin
biosynthesis (via salicilate) and fail to complement
each other. Among isochorismate synthases, the
N-terminal domain is poorly conserved [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 351
Score = 77.8 bits (192), Expect = 1e-15
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 9/176 (5%)
Query: 278 ARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTF 337
A R + + A++ AV EA E+I+ G + ++VL+ R F
Sbjct: 63 AVSSGIRPLRALPEQMTTLTTGEDPDKAAWRTAVEEALENIRQGPLDKVVLA-RALTLKF 121
Query: 338 ADPFEVY---RALRVVNPSPYMTYLQ-ARGCILVASSPEILTRVKKNKIVNRPLAGTVRR 393
AD + LR P+ Y+ L+ +G + + ++PE L +K +++ LAGT R
Sbjct: 122 ADDIDPIAVLANLRQQYPNAYIFLLEPPQGGVFLGATPERLLSREKGELLTEALAGTAPR 181
Query: 394 GRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARS----GSVKVEKLMNV 445
EED L LLKD K EH ++V+ R + + S + ++ KL NV
Sbjct: 182 SADPEEDRKLGELLLKDDKNLREHRLVVEYIRRRLQPICTSLDVSETPELLKLANV 237
>gnl|CDD|102546 PRK06772, PRK06772, salicylate synthase Irp9; Reviewed.
Length = 434
Score = 74.8 bits (183), Expect = 2e-14
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
Query: 290 THHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRV 349
T P + + EAYK V A I+ G+ ++++S+ + D R
Sbjct: 158 TTQNAPLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQ 217
Query: 350 VNPSPYMTYL-QARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLL 408
N +P +++ + G + SPE++ V NK+V PLAGT R E ++ E +LL
Sbjct: 218 AN-TPVRSFMFRQEGREALGFSPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELL 276
Query: 409 KDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
D+K+ EH++ V ++ V + GSV VE LM+V + V H+ S VS
Sbjct: 277 HDSKEVLEHILSVKEAIAELEAVCQPGSVVVEDLMSVRQRGSVQHLGSGVS 327
>gnl|CDD|224091 COG1169, MenF, Isochorismate synthase [Coenzyme metabolism /
Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 423
Score = 74.7 bits (184), Expect = 2e-14
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVY---RALRVVNPSPY--MTYL 359
+ V +A I G++ ++VL++ + TF P + LR NP+ Y + L
Sbjct: 157 ADWLQLVEQALALIAQGELDKVVLARALDL-TFDAPIDAAALLARLRAQNPNCYHFLVAL 215
Query: 360 QARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVM 419
G + +SPE L R + ++V LAG+ RG ED L LL DAK EH +
Sbjct: 216 GDGGA-FLGASPERLVRRRGGQLVTEALAGSAPRGADPVEDAQLGNWLLADAKNLHEHQL 274
Query: 420 LVD 422
+VD
Sbjct: 275 VVD 277
>gnl|CDD|169151 PRK07912, PRK07912, salicylate synthase MbtI; Reviewed.
Length = 449
Score = 68.3 bits (167), Expect = 2e-12
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 307 YKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-----YRALRVVNPSPYMTYLQA 361
Y++ V A I AG +++LS+ E PF V YR R N +P ++L
Sbjct: 186 YRDRVAVAVAEIAAGRYHKVILSRCVEV-----PFAVDFPATYRLGRRHN-TPVRSFLLR 239
Query: 362 RGCILVAS-SPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVM 419
G I SPE++T V+ + +V PLAGT GR D + L ++K+ EH +
Sbjct: 240 LGGIRALGYSPELVTAVRADGVVITEPLAGTRAFGRGAAIDRLARDDLESNSKEIVEHAI 299
Query: 420 LVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
V ++ ++A GS V M V V H+ STV
Sbjct: 300 SVRSSLAEITEIAEPGSAAVIDFMTVRERGSVQHLGSTVR 339
>gnl|CDD|235920 PRK07054, PRK07054, salicylate biosynthesis isochorismate synthase;
Validated.
Length = 475
Score = 59.8 bits (145), Expect = 1e-09
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 14/210 (6%)
Query: 252 HWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAV 311
H V H +E+L + D L+ S + + +++ V
Sbjct: 150 HLV--AAHDDPAALAGACCARIERLAR---PAPAADDDAPRL---LRASALQAREWQHEV 201
Query: 312 LEAKEHIQAGDIFQIVLSQRFERRTFADPFE---VYRALRVVNPSPYMTYLQARGCILVA 368
A + I+ G ++VL+ R + +A P + R LR+ +P ++ + +
Sbjct: 202 RRAVDAIRGGAFGKVVLA-RDVLQQYARPVAIGPLLRRLRLRDPHAHLFAFRRGNACFLG 260
Query: 369 SSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDV 428
++PE L RV + LAGT+ RG ED L L+ AK EH ++VD R
Sbjct: 261 ATPERLVRVAAGDLHTHALAGTIARGADPAEDARLGAALMASAKDRLEHALVVDAIRA-- 318
Query: 429 GKVARSGSVKVEKLMNVERYSHVMHISSTV 458
S ++ + ++ R + H+S+ +
Sbjct: 319 ALAPLSRALDIPDQPSLHRLPRLQHLSTPI 348
>gnl|CDD|235886 PRK06923, PRK06923, isochorismate synthase DhbC; Validated.
Length = 399
Score = 49.3 bits (118), Expect = 2e-06
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVV---NPSPYMTYL-- 359
E Y N V + IQ GD+ +IVLS+ + ++ + + LR + N Y +
Sbjct: 122 EVYMNGVKQGIAKIQDGDLKKIVLSRSLDV-KSSEKIDKQKLLRELAEHNKHGYTFAVNL 180
Query: 360 ----QARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCA 415
L+ +SPE+L ++++ PLAG+ R ED+ +LL K
Sbjct: 181 PKDENENSKTLIGASPELLVSRHGMQVISNPLAGSRPRSDDPVEDKRRAEELLSSPKDLH 240
Query: 416 EHVMLVD 422
EH ++V+
Sbjct: 241 EHAVVVE 247
>gnl|CDD|178383 PLN02786, PLN02786, isochorismate synthase.
Length = 533
Score = 41.7 bits (98), Expect = 7e-04
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 297 LKKSNMTSEAYKN-AVLEAKEHIQAG--DIFQIVL--SQRFERRTFADPFEVYRALRVVN 351
L K+++ S+ + AV +A + I+ + ++VL S R T DP L+V
Sbjct: 251 LSKNHVPSKGAWHLAVNKALQIIKRKSSPLKKVVLARSSRIITDTDIDPIAWLACLQVEG 310
Query: 352 PSPYMTYLQ-ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKD 410
+ Y LQ + ++PE L K + + LA T RG ++ D +E LL
Sbjct: 311 QNAYQFCLQPPDAPAFIGNTPEQLFHRKGLGVCSEALAATRPRGGSSARDLQIELDLLTS 370
Query: 411 AKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISS 456
K E ++ + R + + V VE + + + V H+ +
Sbjct: 371 PKDDLEFSIVRENIREKLEAICD--RVVVEPHKAIRKLARVQHLYA 414
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 37.6 bits (88), Expect = 0.011
Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 45/205 (21%)
Query: 18 RLVPPSHRLSLVPVT--VTRINLPKSAATVSTVKCCVSRQTTTT---TSTATAPATKLAS 72
R + H LV ++ VTR + + ++ C T + T P
Sbjct: 6 RELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPR 65
Query: 73 DASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPS-------------FL 119
+ S + R F D + +QE E P L
Sbjct: 66 ECQ-----SPTPFSLNHERSTFIDF------QKIKLQESPEEVPVGQLPRSVDVILDGDL 114
Query: 120 FESVEPGVRVSNVGRYSVVGAQ---------PVMEVIVKDNNVTIMDHEKGSLVEEVV-- 168
+ +PG RV G Y V PV ++ N+V +D+++
Sbjct: 115 VDKAKPGDRVEVTGIYRNVPYGFKLNTVKGLPVFATYIEANHVRKLDYKRSFEDSSFSVQ 174
Query: 169 ---DDPMEIPRKISEDWKPQIIDEL 190
D+ E RK+S+D P I + L
Sbjct: 175 SLSDEEEEEIRKLSKD--PDIYERL 197
>gnl|CDD|184977 PRK15016, PRK15016, isochorismate synthase EntC; Provisional.
Length = 391
Score = 35.2 bits (81), Expect = 0.058
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 322 DIFQIVLSQRFERRTFADPFEVYRALRVV--NPSPYMTYLQ-ARGCILVASSPEILTRVK 378
+ ++VLS+ + T A R++ NP Y ++ A G +L+ +SPE+L R
Sbjct: 144 QVDKVVLSRLIDITTDAAIDSGALLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKD 203
Query: 379 KNKIVNRPLAGTVRRGRTTEEDEMLE----TQLLKDAKQCAEH 417
+ + PLAG+ RR + DE+L+ +LL K EH
Sbjct: 204 GERFSSLPLAGSARR----QPDEVLDREAGNRLLASEKDRHEH 242
>gnl|CDD|184974 PRK15012, PRK15012, menaquinone-specific isochorismate synthase;
Provisional.
Length = 431
Score = 31.0 bits (70), Expect = 1.3
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 29/183 (15%)
Query: 254 VRLDQHS--SVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSE------ 305
+RL S S+Q + E L LV+ K + P L T E
Sbjct: 123 LRLTLFSESSLQHDAIQAKEFLATLVSIKPL------------PGLH-LTTTREQHWPDK 169
Query: 306 -AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFE---VYRALRVVNPSPYMTYL-- 359
+ + A + I G++ ++VL+ R FA P + A R +N + Y Y+
Sbjct: 170 TGWTQLIELATKTIAEGELDKVVLA-RATDLHFASPVNAAAMMAASRRLNLNCYHFYMAF 228
Query: 360 QARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVM 419
A L SSPE L R + + LAGTV ++ + L L+ D K E+++
Sbjct: 229 DAENAFL-GSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLGEWLMADDKNQRENML 287
Query: 420 LVD 422
+V+
Sbjct: 288 VVE 290
>gnl|CDD|220957 pfam11054, Surface_antigen, Sporozoite TA4 surface antigen. This
family of proteins is a Eukaryotic family of surface
antigens. One of the better characterized members of the
family is the sporulated TA4 antigen. The TA4 gene
encodes a single polypeptide of 25 kDa which contains a
17 and a 8 kD polypeptide.
Length = 258
Score = 29.8 bits (67), Expect = 2.4
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 39 PKSAATVSTVKCCVSRQTTTTTSTATAPATKLASDASGFSE 79
P S+AT C V T TTSTA +L D ++
Sbjct: 164 PSSSATAD---CRVVTCTQATTSTAPGGR-RLQGDGDSETK 200
>gnl|CDD|215123 PLN02192, PLN02192, 3-ketoacyl-CoA synthase.
Length = 511
Score = 29.6 bits (66), Expect = 3.7
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 307 YKNAVLEAKEHIQAGD-IFQIVLSQRFERRTFADPFEVYRALRVVNPS----PYM 356
Y+ A EAK I+ GD +QI F+ + V++ALR VNP+ P+M
Sbjct: 446 YELAYSEAKGRIKKGDRTWQIAFGSGFKCNS-----AVWKALRTVNPAKEKNPWM 495
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 29.8 bits (67), Expect = 3.7
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 5 TAATSMQSLSFSNRLVPPSHRLSLVPVTVTRINLPKSAATVSTVKCCVSRQTTTTTSTAT 64
T + S S + + V +T T + ++ S + QT+T+T+T T
Sbjct: 781 TKTETTLSYSAYSN-TSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT 839
Query: 65 APAT 68
+P+
Sbjct: 840 SPSQ 843
>gnl|CDD|234210 TIGR03439, methyl_EasF, probable methyltransferase domain, EasF
family. This model represents an uncharacterized domain
of about 300 amino acids with homology to
S-adenosylmethionine-dependent methyltransferases.
Proteins with this domain are exclusively fungal. A few,
such as EasF from Neotyphodium lolii, are associated
with the biosynthesis of ergot alkaloids, a class of
fungal secondary metabolites. EasF may, in fact, be the
AdoMet:dimethylallyltryptophan N-methyltransferase, the
enzyme that follows tryptophan dimethylallyltransferase
(DMATS) in ergot alkaloid biosynthesis. Several other
members of this family, including mug158 (meiotically
up-regulated gene 158 protein) from Schizosaccharomyces
pombe, contain an additional uncharacterized domain
DUF323 (pfam03781).
Length = 319
Score = 29.1 bits (66), Expect = 4.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 396 TTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVA 432
T +E E+L+ A MLV+LG ++ KV
Sbjct: 56 TNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVG 92
>gnl|CDD|188209 TIGR02337, HpaR, homoprotocatechuate degradation operon regulator,
HpaR. This Helix-Turn-Helix transcriptional regulator
is a member of the MarR family (pfam01047) and is found
in association with operons for the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate.
Length = 118
Score = 27.7 bits (62), Expect = 5.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 344 YRALRVVNPSPYM--TYLQARGCILVASSPEILTRVKKNKIVNR 385
+R LR++ M T L + CIL S IL R++++ +V R
Sbjct: 31 WRILRILAEQGSMEFTQLANQACILRPSLTGILARLERDGLVTR 74
>gnl|CDD|151390 pfam10943, DUF2632, Protein of unknown function (DUF2632). This is
a family of membrane proteins with unknown function.
Length = 233
Score = 28.4 bits (63), Expect = 6.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 37 NLPKSAATVSTVKCCVSRQTTTTTSTATAPATKLASDAS 75
N P +AA ++ +K CV+ Q T ++T A K+A+ S
Sbjct: 171 NKPLNAAQIAALKICVNGQWFAYTRSSTTSAAKVAAANS 209
>gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid
protein.
Length = 226
Score = 28.5 bits (64), Expect = 6.9
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 6 AATSMQSLSFSNRLVPPSHRLSLVPVTVTRINLPKSAATVSTVKCCVSRQTTTTTSTATA 65
A SM + S+S VPV + + S ++ ST Q+T +S++ +
Sbjct: 107 APNSMATTSYSGGFTSSP-----VPVPPSSSSSASSVSSQST-------QSTGLSSSSYS 154
Query: 66 PAT 68
++
Sbjct: 155 SSS 157
>gnl|CDD|130412 TIGR01345, malate_syn_G, malate synthase G. This model describes
the G isozyme of malate synthase. Isocitrate synthase
and malate synthase form the glyoxylate shunt, which
generates additional TCA cycle intermediates [Energy
metabolism, TCA cycle].
Length = 721
Score = 28.7 bits (64), Expect = 7.7
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 23/113 (20%)
Query: 169 DDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLA 228
DD + IP + +W + I + + G +GY VR+VE + + SK P
Sbjct: 572 DDILTIPVAENTNWSAEEIQQELDNNVQGILGY----VVRWVE-QGIGCSKVP------- 619
Query: 229 DIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQKAYA-EGLEHLEKLV 277
DIH N L+ D ++ ++ +W+R H V K LE + K+V
Sbjct: 620 DIH----NVALMEDRATLRISSQHIANWLR---HGIVSKEQVQASLERMAKVV 665
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.380
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,951,847
Number of extensions: 2229106
Number of successful extensions: 2055
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1968
Number of HSP's successfully gapped: 55
Length of query: 460
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 360
Effective length of database: 6,502,202
Effective search space: 2340792720
Effective search space used: 2340792720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)