RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012578
(460 letters)
>1qdl_A Protein (anthranilate synthase (TRPE-subunit)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: d.161.1.1
Length = 422
Score = 414 bits (1067), Expect = e-143
Identities = 114/371 (30%), Positives = 170/371 (45%), Gaps = 59/371 (15%)
Query: 89 LYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIV 148
+ S+ +P ++C+ ++ + L ES+ RYSV+ +
Sbjct: 2 MEVHPISEFASPFEVFKCIERD---FKVAGLLESIGGP---QYKARYSVIAWSTNGYL-- 53
Query: 149 KDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVR 208
++ DDP+ I +D K ++P F GG +GY SYD VR
Sbjct: 54 -----------------KIHDDPVNILNGYLKDLKL---ADIPGLFKGGMIGYISYDAVR 93
Query: 209 YVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAE 268
+ EK + ++++++DH E KVYV +
Sbjct: 94 FWEKIR----DLKPAAEDWPYAEFFTPDNIIIYDHNEGKVYVN----------ADLSSVG 139
Query: 269 GLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVL 328
G + + ++ +Y+ V E+ E+I++G IFQ+VL
Sbjct: 140 GCGDIGEFKVSFY-----------------DESLNKNSYERIVSESLEYIRSGYIFQVVL 182
Query: 329 SQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLA 388
S+ + DP +Y LR +NPSPYM YL+ L+ SSPE+L RV+ N + P+A
Sbjct: 183 SRFYRYIFSGDPLRIYYNLRRINPSPYMFYLKFDEKYLIGSSPELLFRVQDNIVETYPIA 242
Query: 389 GTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERY 448
GT RG EED LE +L+ K AEH+MLVDL RND+GKV G+VKV +LM VE+Y
Sbjct: 243 GTRPRGADQEEDLKLELELMNSEKDKAEHLMLVDLARNDLGKVCVPGTVKVPELMYVEKY 302
Query: 449 SHVMHISSTVS 459
SHV HI S V
Sbjct: 303 SHVQHIVSKVI 313
>1k0e_A P-aminobenzoate synthase component I; aminodeoxychorismate
synthase, chorismate, glutamine, tryptophan, PABA
synthase, lyase; HET: TRP; 2.00A {Escherichia coli}
SCOP: d.161.1.1 PDB: 1k0g_A*
Length = 453
Score = 410 bits (1056), Expect = e-141
Identities = 96/376 (25%), Positives = 168/376 (44%), Gaps = 36/376 (9%)
Query: 86 LVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVME 145
L P + + L + L S R+ +V A+P+
Sbjct: 4 LSPAVITLLWRQDAAEFYFSRLSHLP----WAMLLHSGYAD---HPYSRFDIVVAEPICT 56
Query: 146 VIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWK--PQIIDELPEAFCGGWVGYFS 203
+ + + EK DDP+++ +++ + P ++LP F GG +G F
Sbjct: 57 LTTFGKETVVSESEK---RTTTTDDPLQVLQQVLDRADIRPTHNEDLP--FQGGALGLFG 111
Query: 204 YDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQ 263
YD R E LP + D L D+ +G+Y+ L+ DH V ++
Sbjct: 112 YDLGRRFES--LP--EIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLL------------ 155
Query: 264 KAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDI 323
++ + L +++ + T + +SNMT E Y + +E++ +GD
Sbjct: 156 -SHNDVNARRAWLESQQFSPQEDFTLTSDW-----QSNMTREQYGEKFRQVQEYLHSGDC 209
Query: 324 FQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIV 383
+Q+ L+QRF D ++ + L N +P+ +L+ +++ SPE ++I
Sbjct: 210 YQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQ 269
Query: 384 NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLM 443
RP+ GT+ R +ED +L AK AE++M+VDL RND+G+VA +GSVKV +L
Sbjct: 270 TRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELF 329
Query: 444 NVERYSHVMHISSTVS 459
VE + V H+ ST++
Sbjct: 330 VVEPFPAVHHLVSTIT 345
Score = 28.7 bits (65), Expect = 4.7
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
Query: 185 QIIDEL-PE---AFCGGWVGYFSYD 205
+IIDEL P+ A+CG +GY S+
Sbjct: 377 EIIDELEPQRRNAWCGS-IGYLSFC 400
>1i1q_A Anthranilate synthase component I; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: d.161.1.1
PDB: 1i7q_A 1i7s_A*
Length = 520
Score = 383 bits (986), Expect = e-129
Identities = 97/421 (23%), Positives = 158/421 (37%), Gaps = 63/421 (14%)
Query: 84 ANLVPLYRCIFSD---HLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGA 140
P + D P + + + + L ES + S S++
Sbjct: 2 QTPKPTLELLTCDAAYRENPTALFHQVCGD---RPATLLLESADID---SKDDLKSLLLV 55
Query: 141 QPVMEVIVKDNNVTI----------MDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDEL 190
+ + + VTI + +L V +D + R + ++DE
Sbjct: 56 DSALRITALGDTVTIQALSDNGASLLPLLDTALPAGVENDVLPAGRVLRFPPVSPLLDEN 115
Query: 191 PEA-----------------------FCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSL 227
+ G F+YD V E LP +
Sbjct: 116 ARLCSLSVFDAFRLLQGVVNIPTQEREAMFFGGLFAYDLVAGFE--ALP---HLEAGNNC 170
Query: 228 ADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSID 287
D L ++V DH +K + + L L + +T+
Sbjct: 171 PDYCFYLAETLMVIDHQKKSTRIQASLFTASDR----EKQRLNARLAYLSQQ--LTQPAP 224
Query: 288 LHTHHFGPPLK-KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRA 346
P ++ + N + +A+ V + ++ I+AG+IFQ+V S+RF P Y
Sbjct: 225 PLPVTPVPDMRCECNQSDDAFGAVVRQLQKAIRAGEIFQVVPSRRFSLP-CPSPLAAYYV 283
Query: 347 LRVVNPSPYMTYLQARGCILVASSPEILTRVKK--NKIVNRPLAGTVRRGRTT------E 398
L+ NPSPYM ++Q L +SPE + +I P+AGT RGR +
Sbjct: 284 LKKSNPSPYMFFMQDNDFTLFGASPESSLKYDAASRQIEIYPIAGTRPRGRRADGTLDRD 343
Query: 399 EDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTV 458
D +E + D K+ +EH+MLVDL RND+ ++ GS V L V+RYS+VMH+ S V
Sbjct: 344 LDSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRV 403
Query: 459 S 459
Sbjct: 404 V 404
>2fn0_A Salicylate synthetase, IRP9; salicylate synthase, siderophore,
transcription; 1.85A {Yersinia enterocolitica} SCOP:
d.161.1.1 PDB: 2fn1_A*
Length = 437
Score = 332 bits (854), Expect = e-110
Identities = 74/367 (20%), Positives = 125/367 (34%), Gaps = 55/367 (14%)
Query: 95 SDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSV-VGAQPVMEVIVKDNNV 153
L + V E +++E + + G Q + +
Sbjct: 17 EQWLPTISG----VLRQFAEEECYVYE---------RPPCWYLGKGCQARLHINADGTQA 63
Query: 154 TIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWV-GYFSYDTVRYVEK 212
T +D + VD + R + + G V G ++ +
Sbjct: 64 TFIDDAGEQ--KWAVDSIADCAR--------RFMAHPQ--VKGRRVYGQVGFNFAAHARG 111
Query: 213 KKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEH 272
+ + L + + L+F+ VY A+G
Sbjct: 112 I-------AFNAGEWPLLTLTVPREELIFEKGNVTVYA--------------DSADGCRR 150
Query: 273 LEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRF 332
L + V T P + + EAYK V A I+ G+ ++++S+
Sbjct: 151 LCEWVKEASTTTQN-------APLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAI 203
Query: 333 ERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVR 392
+ D R N + G + SPE++ V NK+V PLAGT
Sbjct: 204 PLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGNKVVTEPLAGTRD 263
Query: 393 RGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVM 452
R E ++ E +LL D+K+ EH++ V ++ V GSV VE LM+V + V
Sbjct: 264 RMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQ 323
Query: 453 HISSTVS 459
H+ S VS
Sbjct: 324 HLGSGVS 330
>3log_A Isochorismate synthase/isochorismate-pyruvate LYA; salicylate,
anthranilate, isochor synthase, isochorismate lyase, ION
transport; 1.73A {Mycobacterium tuberculosis} PDB:
2i6y_A 2g5f_A
Length = 451
Score = 322 bits (827), Expect = e-106
Identities = 63/385 (16%), Positives = 122/385 (31%), Gaps = 54/385 (14%)
Query: 77 FSEASKRANLVPLYRCIFSDHLTPVVAYRCL-VQEDDREAPSFLFESVEPGVRVSNVGRY 135
S ++ +P+ + P L + +L + G++
Sbjct: 10 TGAVSTASSSIPM-----PAGVNPADLAAELAAVVTESVDEDYLLYECD--------GQW 56
Query: 136 SVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFC 195
+ A V + + + ++ ++ P + +D L
Sbjct: 57 VL-AAGVQAMVELDSDELRVIRDGVTR-RQQWSGRPGAALG--------EAVDRLL-LET 105
Query: 196 GGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVR 255
G+ +++ + + ++ E +++
Sbjct: 106 DQAFGWVAFEFGVHRYGL------QQRLAPHTPLARVFSPRTRIMVSEKEIRLF------ 153
Query: 256 LDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAK 315
A E +++L+A V + ++ V A
Sbjct: 154 --------DAGIRHREAIDRLLATGVREVP--------QSRSVDVSDDPSGFRRRVAVAV 197
Query: 316 EHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILT 375
+ I AG +++LS+ E D YR R N LQ G + SPE++T
Sbjct: 198 DEIAAGRYHKVILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFLLQLGGIRALGYSPELVT 257
Query: 376 RVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARS 434
V+ + +V PLAGT GR D + L ++K+ EH + V ++ +A
Sbjct: 258 AVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRSSLEEITDIAEP 317
Query: 435 GSVKVEKLMNVERYSHVMHISSTVS 459
GS V M V V H+ ST+
Sbjct: 318 GSAAVIDFMTVRERGSVQHLGSTIR 342
>3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate
synthetase, cytophaga hutchinsonii,YP_678417.1,
CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc
33406}
Length = 436
Score = 305 bits (782), Expect = e-100
Identities = 65/276 (23%), Positives = 118/276 (42%), Gaps = 27/276 (9%)
Query: 185 QIIDELPEAFCGGW-VGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDH 243
+ +E+ + + W + SYD VE+ L + + A + V
Sbjct: 68 ETWNEIKKGYTNEWIFVFASYDGKNSVEQ--LH--TSKEAGIAFAAATFFIPEHVWEIQP 123
Query: 244 VEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMT 303
+ H + ++H E + + K ++
Sbjct: 124 DGILI----------HKGSGSSLVTEIQHAEPSTPVQQSDIFV------------KQVVS 161
Query: 304 SEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARG 363
E+Y NA E ++ I GD ++I F + P Y+ L P P+ Y +
Sbjct: 162 KESYFNAFDELQQIIAQGDAYEINYCIPFTAKGNISPAATYQRLNKKTPMPFSVYYKFNT 221
Query: 364 CILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
++++SPE + + I+++P+ GT +RG++ EDEML+ QL K+ +E+ M+VDL
Sbjct: 222 EYILSASPERFIKKTGDTIISQPIKGTSKRGKSKAEDEMLKQQLGTSEKEQSENTMIVDL 281
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
RND+ + A +GSV V +L + + +V + STV
Sbjct: 282 VRNDLSRTAVAGSVCVPELSGLYTFPNVHQLISTVQ 317
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 235 bits (601), Expect = 9e-71
Identities = 39/271 (14%), Positives = 91/271 (33%), Gaps = 27/271 (9%)
Query: 191 PEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYV 250
A + G SY + P + ++ + ++ + + ++ +
Sbjct: 35 ERAMIDVFAGAVSYPSSLAEL----PLAAPTATGADRQELLV-----MVPYRQLHERGFK 85
Query: 251 IHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNA 310
H D + + + E + +A + + ++ EAY
Sbjct: 86 TH----DDGAPLVAITCDEHETVSAQLALA------AIPDADTALGERHFDIDDEAYAEI 135
Query: 311 VLEA-KEHIQAGDIFQIVLSQRFERR----TFADPFEVY-RALRVVNPSPYMTYLQARGC 364
V + I G V+ + E + A V+ R +R + ++ +
Sbjct: 136 VERVITDEIGTGAGSNFVIKRTLEGDLDDYSPAKALAVFKRLMRREVGAYWIFVIHTGER 195
Query: 365 ILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLG 424
V ++PE + + P++GT R ++ + + L D K+ E M++D
Sbjct: 196 TFVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGIN-AFLGDRKESDELYMVLDEE 254
Query: 425 RNDVGKVARSG-SVKVEKLMNVERYSHVMHI 454
+ ++ +G V L + R +H +
Sbjct: 255 LKMMARICPAGGQVTGPHLREMARLAHTEYF 285
>3os6_A Isochorismate synthase DHBC; structural genomics, center for
structural genomics of infec diseases, csgid, isomerase;
HET: MSE 15P; 2.40A {Bacillus anthracis}
Length = 399
Score = 217 bits (555), Expect = 2e-66
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 299 KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYM 356
E Y V + E I+ GD+ +IVLS+ + ++ D ++ R L N Y
Sbjct: 116 TPVPDHEVYMKGVKQGIEKIKDGDLKKIVLSRSLDVKSSGKIDKQKLLRELAEHNKHGYT 175
Query: 357 TYL------QARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKD 410
+ L+ +SPE+L ++++ PLAG+ R ED+ +LL
Sbjct: 176 FAVNLPKDENENSKTLIGASPELLVSRHGMQVISNPLAGSRPRSDDPVEDKRRAEELLSS 235
Query: 411 AKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
K EH ++V+ + ++ V + +V + H+S+ V
Sbjct: 236 PKDLHEHAVVVEAVAAALRPYCH--TLYVPEKPSVIHSEAMWHLSTEVK 282
>3gse_A Menaquinone-specific isochorismate synthase; MENF,yersinia P CO92,
YPO2528, csgid, isomerase, structural genomics; 2.28A
{Yersinia pestis}
Length = 458
Score = 217 bits (554), Expect = 9e-66
Identities = 49/279 (17%), Positives = 104/279 (37%), Gaps = 21/279 (7%)
Query: 185 QIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHV 244
I + P+A G +++ V + L + ++ L L ++
Sbjct: 84 DFIQQNPDANGLRIWGLNAFEPVMVFGQ--LTDN-GLVSGKNAQASFLFLPRLEILRRGK 140
Query: 245 EKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTS 304
+ + + L +S+QK + + +++L+A + L +
Sbjct: 141 KTSLTLN----LSSETSLQKDALQAITFIDQLMAAR------ALPVLNARIQHSSHTPGY 190
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYMTYLQ-A 361
++N + +A I+ + ++VL++ A R VN Y L+
Sbjct: 191 PQWRNLIQQALNDIEQQKLDKVVLARTTTLTLNKPLSCAAFMAASRQVNHRCYHFMLRFD 250
Query: 362 RGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLV 421
+ SSPE L ++ + LAGTV + + +L L+ D K E++++V
Sbjct: 251 DRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVV 310
Query: 422 DLGRNDVGKVARSGSVKVEKLM-NVERYSHVMHISSTVS 459
D D+ + + G V+ + + R V H+ +
Sbjct: 311 D----DICQRLQGGVTAVDVMPPEIIRLRKVQHLRRRIC 345
>3bzm_A Menaquinone-specific isochorismate synthase; isomerase, menaquinone
biosynthesis; HET: CIT; 1.95A {Escherichia coli} SCOP:
d.161.1.1 PDB: 2eua_A* 3bzn_A
Length = 431
Score = 215 bits (550), Expect = 2e-65
Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 14/224 (6%)
Query: 239 LVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLK 298
L + K + + L SS+Q + E + LV+ K L H +
Sbjct: 112 LEWRRCGGKATLR--LTLFSESSLQHDAIQAKEFIATLVSIK------PLPGLHLTTTRE 163
Query: 299 KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYM 356
+ + + A + I G++ ++VL++ + + + + A R +N + Y
Sbjct: 164 QHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYH 223
Query: 357 TYLQARG-CILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCA 415
Y+ G + SSPE L R + + LAGTV ++ + L L+ D K
Sbjct: 224 FYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQR 283
Query: 416 EHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
E++++V+ + ++ V V R V H+ +
Sbjct: 284 ENMLVVEDICQRLQADTQTLDVLP---PQVLRLRKVQHLRRCIW 324
>3hwo_A Isochorismate synthase ENTC; chorismate-utilizing enzymes,
siderophore, enterobactin, enterobactin biosynthesis,
ION T iron, iron transport; HET: ISC; 2.30A {Escherichia
coli}
Length = 394
Score = 198 bits (506), Expect = 2e-59
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 5/174 (2%)
Query: 289 HTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRA 346
+ +++ ++ V A + ++VLS+ + T A D +
Sbjct: 114 RSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDAAIDSGVLLER 173
Query: 347 LRVVNPSPYMTYLQ-ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLET 405
L NP Y ++ A G +L+ +SPE+L R + + PLAG+ RR D
Sbjct: 174 LIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARRQPDEVLDREAGN 233
Query: 406 QLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTVS 459
+LL K EH ++ + + + S + V + + H+++
Sbjct: 234 RLLASEKDRHEHELVTQAMKEVLRER--SSELHVPSSPQLITTPTLWHLATPFE 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 2e-11
Identities = 58/397 (14%), Positives = 126/397 (31%), Gaps = 115/397 (28%)
Query: 91 RCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRV----SNVGRYSVVGAQPVMEV 146
R + CL+ + + + + ++ + A +
Sbjct: 235 RRLLKSKPYE----NCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 147 IVKDNNVTIMDHEKGSLVEEVVD-DPMEIPR---KISEDWKPQIIDELPEAFCGG---WV 199
+ +++T+ E SL+ + +D P ++PR + P+ + + E+ G W
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATW- 344
Query: 200 GYFSYDTVRYVEKKKLPFSKA---------PHDDRSLADIHLGLYNDVLVFD---HVEKK 247
D ++V KL + P + R + ++ + VF H+
Sbjct: 345 -----DNWKHVNCDKL--TTIIESSLNVLEPAEYRKM-------FDRLSVFPPSAHIPTI 390
Query: 248 VYVIHWVRLDQHSSVQKAYAEGLEHLEK--LVARKVITRSIDLHTHHFGPPLKKSNMTS- 304
+ + W + + S V + L K LV ++ +I + + + +K N +
Sbjct: 391 LLSLIWFDVIK-SDVMVV----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 305 -----EAYKNAV-----------------------LEAKEHIQAGDIF-QIVLSQRF-ER 334
+ Y L+ EH + +F + L RF E+
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 335 R----------------TFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVK 378
+ T + Y+ N Y + A IL + L +++
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNA---IL-----DFLPKIE 556
Query: 379 KNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCA 415
+N ++ +R E++ + E KQ
Sbjct: 557 EN-LICSKYTDLLRIALMAEDEAIFEEA----HKQVQ 588
Score = 57.2 bits (137), Expect = 9e-09
Identities = 58/384 (15%), Positives = 110/384 (28%), Gaps = 119/384 (30%)
Query: 144 MEVIVKDNNVT-IMDHEKGSLVEEVVDDPMEIPRKISED----W----KPQIIDELPEAF 194
+ V + + + D K L +E +D + +S W K + E+ + F
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---EMVQKF 82
Query: 195 CGGWV--GY-FSYDTVRYVEKKKLPFSKAPHDDRSL-ADIHLGLYNDVLVFDHVEKKVYV 250
+ Y F ++ + P + + LYND VF K V
Sbjct: 83 VEEVLRINYKFLMSPIKTE-------QRQPSMMTRMYIEQRDRLYNDNQVF----AKYNV 131
Query: 251 IHWVRLDQHSSVQKAYAEGLEHLEKL-VARKVITRSIDLHTHH----FGPPLKKSNMTSE 305
RL + +++A L +L A+ V+ G K+ + +
Sbjct: 132 ---SRLQPYLKLRQA-------LLELRPAKNVLI--------DGVLGSG----KTWVALD 169
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTF----------ADPFEVYRALRVVNP--- 352
+ ++ K IF + L T DP R+ N
Sbjct: 170 VCLSYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 353 --------SPYMTYLQARGCILV---ASSPEIL------------TRVKKNKIVNRPLAG 389
+ C+LV + + TR K V L+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSA 283
Query: 390 TVRRGRTTE-------EDEMLETQLLKDAKQ---------CAEHVMLVDLGRNDVGKVAR 433
+ + DE+ LLK + + + + + R
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSI----IAESIR 338
Query: 434 SGSVKVE--KLMNVERYSHVMHIS 455
G + K +N ++ + ++ S
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESS 362
Score = 48.3 bits (114), Expect = 4e-06
Identities = 37/301 (12%), Positives = 83/301 (27%), Gaps = 92/301 (30%)
Query: 176 RKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLP-FSKAPHDDRSLADIHLGL 234
+ I ++ +D D + V+ SK D
Sbjct: 19 KDILSVFEDAFVDNF--------------D-CKDVQDMPKSILSKEEIDH---------- 53
Query: 235 YNDVLVFDHVEKKVYVIHWVRLDQHSS-VQKAYAEGLEHLEKLVARKVITRSIDLHTHHF 293
+++ + W L + VQK E L K + + T
Sbjct: 54 ---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------ 104
Query: 294 GPPLKKSNMTSE---AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYR-ALRV 349
P + + Y + + AK ++ R + P+ R AL
Sbjct: 105 -PSMMTRMYIEQRDRLYNDNQVFAKYNV-----------SRLQ------PYLKLRQALLE 146
Query: 350 VNPSPY-----MTYLQARGC---ILVASSPEILTRVKKNKIVNRPLAG----TVRRGRTT 397
+ P+ + G + K+ + ++ +
Sbjct: 147 LRPAKNVLIDGVL-----GSGKTWVALDV------CLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 398 EED-EMLET---QLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMH 453
E EML+ Q+ + ++H + L + + ++ +L+ + Y + +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-------ELRRLLKSKPYENCLL 248
Query: 454 I 454
+
Sbjct: 249 V 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 9e-08
Identities = 59/367 (16%), Positives = 107/367 (29%), Gaps = 121/367 (32%)
Query: 20 VPPSHRLSLVPVTVTRINLPKSAATVSTVKCC--------VSRQTTTTTS----TATAPA 67
P L +P++ I + + A V T K + T S TA A A
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 68 TKLASDASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQE---DDREAPSFLFESVE 124
F + ++A +F + RC E + PS L +S+E
Sbjct: 285 E--TDSWESFFVSVRKA-----ITVLFF------IGVRC--YEAYPNTSLPPSILEDSLE 329
Query: 125 PG-------VRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEI--- 174
+ +SN+ + + V + + K N L +EI
Sbjct: 330 NNEGVPSPMLSISNLTQ------EQVQDYVNKTN---------SHLPA---GKQVEISLV 371
Query: 175 --PRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPF----SKAPHDDR--- 225
+ + ++ P++ G + K K P S+ P +R
Sbjct: 372 NGAKNL-------VVSGPPQSLYG---------LNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 226 -------------S--LAD----IHLGLYNDVLVFDHVEKKVYVIH---WVRLDQHSSVQ 263
S L I+ L + + F+ + ++ V L +
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL------R 469
Query: 264 KAYAEGLEHLEKLVARKVI--TRSIDLHTHH---FGPPLKKSNMTSEAYKNAVLEAK--E 316
E + + R + + H FG P S + ++N +
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTHRN--KDGTGVR 526
Query: 317 HIQAGDI 323
I AG +
Sbjct: 527 VIVAGTL 533
Score = 48.1 bits (114), Expect = 5e-06
Identities = 67/440 (15%), Positives = 125/440 (28%), Gaps = 174/440 (39%)
Query: 67 ATKLASDASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPG 126
A KL + + K L+ + + A + D+++ S LF +V G
Sbjct: 105 AAKLLQEND--TTLVKTKELI---KNYIT-------ARIMAKRPFDKKSNSALFRAVGEG 152
Query: 127 VRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQI 186
N ++ G Q G+ ++D+
Sbjct: 153 ----NAQLVAIFGGQ-------------------GN----------------TDDY---- 169
Query: 187 IDELPEAFCGGWVGYFSY-----DTVRYVEKKKLPFSKAPHDDRSLA----DIHLGLYN- 236
+EL + Y +Y D +++ + + D + +I L N
Sbjct: 170 FEELRDL-------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 237 ----DVLVFDHVEKKV------------YVIHWVRLDQHSSVQKAYAEGL-EHLEKLVAR 279
D + + YV+ L ++Y +G H + LV
Sbjct: 223 SNTPDKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 280 KVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVL-SQRFERRTFA 338
I + + E++ +V +A I +F I + T
Sbjct: 281 VAIAET----------------DSWESFFVSVRKA---ITV--LFFIGVRCYEAYPNTSL 319
Query: 339 DPFEVYRALRVVN--PSPYMTYLQARGCILVASSPEILTRVKK-NK-----------IVN 384
P + +L PSP M L + ++ V K N +VN
Sbjct: 320 PPSILEDSLENNEGVPSP-M--LSISNL----TQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 385 RP----LAG----------TVRRGR-TTEED----EMLE-----------------TQLL 408
++G T+R+ + + D E + LL
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 409 KDAKQCAEHVMLVDLGRNDV 428
A ++ DL +N+V
Sbjct: 433 VPAS----DLINKDLVKNNV 448
Score = 34.3 bits (78), Expect = 0.094
Identities = 54/303 (17%), Positives = 95/303 (31%), Gaps = 117/303 (38%)
Query: 147 IVKDNNVTIMDH---EKG--------SLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFC 195
IV +N V + H EKG +++ E + D KI ++ I+E ++
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE-----INEHSTSYT 1718
Query: 196 GGWVG--------YF--------SYDTVRYVEKKKLPFSKAPHDDRSLADIH-LGLYN-- 236
+ F ++ K L P D + A H LG Y
Sbjct: 1719 --FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL----IPADA-TFAG-HSLGEYAAL 1770
Query: 237 ----DVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHH 292
DV+ + + V V+ R G ++ V R + RS +
Sbjct: 1771 ASLADVMSIESL---VEVVF-YR-------------G-MTMQVAVPRDELGRS------N 1806
Query: 293 FG-----PPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRAL 347
+G P ++ + EA + V + + G + +IV
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGK--RTGWLVEIV-------------------- 1844
Query: 348 RVVNP-SPYMTY-----LQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEE-D 400
N Y L+A + + +L +K KI L ++ + EE +
Sbjct: 1845 ---NYNVENQQYVAAGDLRA-----LDTVTNVLNFIKLQKIDIIELQKSL----SLEEVE 1892
Query: 401 EML 403
L
Sbjct: 1893 GHL 1895
Score = 33.9 bits (77), Expect = 0.16
Identities = 33/254 (12%), Positives = 63/254 (24%), Gaps = 106/254 (41%)
Query: 301 NMTSEAYKN-----AVLE-AKEHIQA--G-DIFQIV------------------LSQRFE 333
M + YK V A H + G I IV + + +
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 334 RRTFADPFEVYRALRVVNP------SPYM----------T-YLQARGCILVASSPEILTR 376
F + + + Y T + Q + +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--ALTLMEK-AAFED 1746
Query: 377 VKKNKIVNRP--LAG--------------------TVR----RGRTTEE----------- 399
+K ++ AG V RG T +
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 400 ----------------DEMLETQLLKDAKQCAEHVMLVDLGRNDVGK--VARSGSVK-VE 440
E L+ + + K+ V +V+ N + VA +G ++ ++
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY--NVENQQYVA-AGDLRALD 1863
Query: 441 KLMNVERYSHVMHI 454
+ NV + + I
Sbjct: 1864 TVTNVLNFIKLQKI 1877
Score = 33.5 bits (76), Expect = 0.19
Identities = 40/222 (18%), Positives = 64/222 (28%), Gaps = 83/222 (37%)
Query: 2 NAGTAATSMQSLSFS--------------NRLVPPSHRLSLVPVTVTRINLPKSAATVST 47
N + M LS S N +P ++ ++ +N K+
Sbjct: 330 NNEGVPSPM--LSISNLTQEQVQDYVNKTNSHLPAGKQVE-----ISLVNGAKNL----- 377
Query: 48 VKCCVS------RQTTTTTSTATAPATKLASDASGFSEASKRANLVPLYRCIF------- 94
V VS T A AP+ S S+R L R F
Sbjct: 378 V---VSGPPQSLYGLNLTLRKAKAPSGLDQSRI----PFSERK-LKFSNR--FLPVASPF 427
Query: 95 -SDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNV 153
S L P L+ +D + F + + + V Y D
Sbjct: 428 HSHLLVPASD---LINKDL-VKNNVSFNAKDIQIPV-----YDTFDG--------SD--- 467
Query: 154 TIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQ-------IID 188
+ GS+ E +VD + +P + W+ I+D
Sbjct: 468 --LRVLSGSISERIVDCIIRLP--V--KWETTTQFKATHILD 503
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 34.2 bits (79), Expect = 0.097
Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 33/201 (16%)
Query: 18 RLVPPSH--RLSLVPVTVTRINLPKSAATVSTVKCCVSRQTTTTTSTATAPATKLASDAS 75
R + + +L + + ++ K +T K ++ +
Sbjct: 104 RKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPT 163
Query: 76 GFSEASKRANLVPLYR-CIFSDHLTPVVAYRCLVQEDDREAPS-------------FLFE 121
+ K + D + ++QE E PS L +
Sbjct: 164 ICPKCGKPGQFRLIPEKTKLIDW------QKAVIQERPEEVPSGQLPRQLEIILEDDLVD 217
Query: 122 SVEPGVRVSNVGRYSVV-------GAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEI 174
S PG RV G + G++ V ++ +K +++ + + + ++ +
Sbjct: 218 SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLDEV--IISEEDEKK 275
Query: 175 PRKISEDWKPQIIDELPEAFC 195
+ +++D P I D + +
Sbjct: 276 IKDLAKD--PWIRDRIISSIA 294
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 31.8 bits (73), Expect = 0.25
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 349 VVNPSPYMTYLQARGCI--LVASSPEILTRVKKNKIVNRPLA 388
VN ++ L+ G L A + R+ K++I RPL
Sbjct: 84 FVN----VSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLF 121
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.91
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 20/46 (43%)
Query: 155 IMDHEKGSLV-EE---VVDDPMEIPRKISEDWKPQIIDELPE--AF 194
+ +G +V V+ D +++D E F
Sbjct: 35 VERFSEGDVVCALCGLVLSD--------------KLVDTRSEWRTF 66
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 30.0 bits (68), Expect = 1.6
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 119 LFESVEPGVRVSNVGRYSVVGAQ--PVMEVIVKDNNVTIM--DHEKGSLVEEVVDDPMEI 174
L +++ PG V G V + + + N + + E+ + EE D +I
Sbjct: 208 LVDTLTPGDIVRVTGTLRTVRDERTKRFKNFIYGNYTEFLEQEFEELQISEE---DEEKI 264
Query: 175 PRKISEDWKPQIIDEL 190
++++ D P I +++
Sbjct: 265 -KELAGD--PNIYEKI 277
>3lxz_A Glutathione S-transferase family protein; structural genomics,
PP0183, PSI-2, protein structure initiative; 1.76A
{Pseudomonas putida} PDB: 3pr8_A*
Length = 229
Score = 27.7 bits (62), Expect = 7.0
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 226 SLADIHLGLYNDVLVFDHVEKKVYVIHWV-----------RLDQHSSVQKAYAEGLEHLE 274
+LAD+ V + + V KKV I ++ + ++ + + A+ +
Sbjct: 153 TLADLMFCFS--VDLANAVGKKVLNIDFLADFPQAKALLQLMGENPHMPRILADKEASMP 210
Query: 275 KLVARKVITRSIDLHTHH 292
+ + H HH
Sbjct: 211 AFMEMIRSGKREGHHHHH 228
>3tai_A DNA double-strand break repair protein NURA; recombination,
hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB:
3tal_A* 3taz_A*
Length = 471
Score = 27.6 bits (60), Expect = 9.5
Identities = 31/220 (14%), Positives = 76/220 (34%), Gaps = 10/220 (4%)
Query: 164 VEEVVDDPMEIPRKISEDWKPQIIDELPEAF-CGGWVGYFSYDTVRYVEKKKLPFSKAPH 222
VEE ++ I D ++++L + + + Y S + +K L +S
Sbjct: 196 VEEHLEKNGNYDSPILTD---NVVEKLRKKYIDTKVIAYGSGKVKVKIPRKALGYSPRVI 252
Query: 223 DDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLV-ARKV 281
L +++L EK + + + +Y E L ++KL+ + +
Sbjct: 253 PIEVLESSRGKSVDELLQELDEEKVELYLGKDDIYDALHMTLSYIEYLYSIDKLLEVKNL 312
Query: 282 ITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPF 341
+ +T L + A +AV+ + +I + + +F D
Sbjct: 313 AYIAKSFYTKTLARTL-GVEIVDTALLDAVIRTLIGHEKEGYLEIEHAVVPPKWSFPDFL 371
Query: 342 EVY--RALRVVNPSPYMTY--LQARGCILVASSPEILTRV 377
++++ ++ Y + I + S + ++
Sbjct: 372 LSKFRNIEKLIDKGIHLAYVRFEQGDVIYMLQSTTNIEKI 411
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.380
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,907,739
Number of extensions: 422182
Number of successful extensions: 1047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 32
Length of query: 460
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 363
Effective length of database: 3,993,456
Effective search space: 1449624528
Effective search space used: 1449624528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.2 bits)