RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012578
(460 letters)
>d1qdla_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 422
Score = 170 bits (432), Expect = 6e-49
Identities = 115/365 (31%), Positives = 168/365 (46%), Gaps = 59/365 (16%)
Query: 95 SDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVT 154
S+ +P ++C+ ++ + L ES+ RYSV+ + +
Sbjct: 8 SEFASPFEVFKCIERDFK---VAGLLESIGGP---QYKARYSVIAWSTNGYLKIH----- 56
Query: 155 IMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKK 214
DDP+ I +D K + ++P F GG +GY SYD VR+ EK +
Sbjct: 57 --------------DDPVNILNGYLKDLK---LADIPGLFKGGMIGYISYDAVRFWEKIR 99
Query: 215 LPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLE 274
A ++++++DH E KVYV +
Sbjct: 100 DLKPAAEDWP----YAEFFTPDNIIIYDHNEGKVYVNADLSSVGGCG------------- 142
Query: 275 KLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFER 334
F ++ +Y+ V E+ E+I++G IFQ+VLS+ +
Sbjct: 143 --------------DIGEFKVSFYDESLNKNSYERIVSESLEYIRSGYIFQVVLSRFYRY 188
Query: 335 RTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRG 394
DP +Y LR +NPSPYM YL+ L+ SSPE+L RV+ N + P+AGT RG
Sbjct: 189 IFSGDPLRIYYNLRRINPSPYMFYLKFDEKYLIGSSPELLFRVQDNIVETYPIAGTRPRG 248
Query: 395 RTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHI 454
EED LE +L+ K AEH+MLVDL RND+GKV G+VKV +LM VE+YSHV HI
Sbjct: 249 ADQEEDLKLELELMNSEKDKAEHLMLVDLARNDLGKVCVPGTVKVPELMYVEKYSHVQHI 308
Query: 455 SSTVS 459
S V
Sbjct: 309 VSKVI 313
>d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I
{Escherichia coli [TaxId: 562]}
Length = 453
Score = 148 bits (373), Expect = 2e-40
Identities = 92/368 (25%), Positives = 160/368 (43%), Gaps = 44/368 (11%)
Query: 98 LTPVVAYRCLVQEDD---------REAP-SFLFESVEPGVRVSNVGRYSVVGAQPVMEVI 147
L+P V L+ D P + L S R+ +V A+P+ +
Sbjct: 4 LSPAVIT--LLWRQDAAEFYFSRLSHLPWAMLLHSGYAD---HPYSRFDIVVAEPICTLT 58
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISE--DWKPQIIDELPEAFCGGWVGYFSYD 205
+ + EK DDP+++ +++ + D +P ++LP F GG +G F YD
Sbjct: 59 TFGKETVVSESEKR---TTTTDDPLQVLQQVLDRADIRPTHNEDLP--FQGGALGLFGYD 113
Query: 206 TVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKA 265
R E + D+ +G+Y+ L+ DH V ++ ++ + +
Sbjct: 114 LGRRFESLPEIAEQDIVLP----DMAVGIYDWALIVDHQRHTVSLLSHNDVNARRAWLE- 168
Query: 266 YAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQ 325
++ +SNMT E Y + +E++ +GD +Q
Sbjct: 169 -----------------SQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQ 211
Query: 326 IVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNR 385
+ L+QRF D ++ + L N +P+ +L+ +++ SPE ++I R
Sbjct: 212 VNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTR 271
Query: 386 PLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNV 445
P+ GT+ R +ED +L AK AE++M+VDL RND+G+VA +GSVKV +L V
Sbjct: 272 PIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVV 331
Query: 446 ERYSHVMH 453
E + V H
Sbjct: 332 EPFPAVHH 339
>d2fn0a1 d.161.1.1 (A:2-434) Salicylate synthetase Irp9 {Yersinia
enterocolitica [TaxId: 630]}
Length = 433
Score = 141 bits (357), Expect = 3e-38
Identities = 68/366 (18%), Positives = 123/366 (33%), Gaps = 50/366 (13%)
Query: 95 SDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVT 154
+ P ++ ++ +++E +G + + +
Sbjct: 12 EEQWLPTISGVLRQFAEE---ECYVYER----------PPCWYLGKGCQARLHINADGTQ 58
Query: 155 IMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKK 214
+ + VD + R+ P+ G ++ +
Sbjct: 59 ATFIDDAGEQKWAVDSIADCARRFMAH---------PQVKGRRVYGQVGFNFAAHARG-- 107
Query: 215 LPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLE 274
+ + L + + L+F+ VY A+G L
Sbjct: 108 -----IAFNAGEWPLLTLTVPREELIFEKGNVTVYADS--------------ADGCRRLC 148
Query: 275 KLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFER 334
+ V T P + + EAYK V A I+ G+ ++++S+
Sbjct: 149 EWVKEASTTTQN-------APLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAIPL 201
Query: 335 RTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRG 394
+ D R N + G + SPE++ V NK+V PLAGT R
Sbjct: 202 PSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGNKVVTEPLAGTRDRM 261
Query: 395 RTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHI 454
E ++ E +LL D+K+ EH++ V ++ V GSV VE LM+V + V H+
Sbjct: 262 GNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQHL 321
Query: 455 SSTVSI 460
S VS
Sbjct: 322 GSGVSG 327
>d1i7qa_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Serratia marcescens [TaxId: 615]}
Length = 517
Score = 120 bits (301), Expect = 3e-30
Identities = 93/399 (23%), Positives = 149/399 (37%), Gaps = 58/399 (14%)
Query: 97 HLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNVTI- 155
P + L + L ES E S++ + + + V++
Sbjct: 15 RGDPTTLFHQLCGA---RPATLLLESAEIN---DKQNLQSLLVIDSALRITALGHTVSVQ 68
Query: 156 --------------------MDHEKGSLVEEVVDDPMEIPRKISEDWK-PQIIDEL---- 190
+ ++ E+ ++ + + + D L
Sbjct: 69 ALTANGPALLPLLDEALPPEVRNQARPNGRELTFPAIDAVQDEDARLRSLSVFDALRTIL 128
Query: 191 -------PEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDH 243
E G F+YD V E A D+ D L +LV DH
Sbjct: 129 TLVDSPADEREAVMLGGLFAYDLVAGFENL-----PALRQDQRCPDFCFYLAETLLVLDH 183
Query: 244 VEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMT 303
+ V + +S + LE L+ + + + N +
Sbjct: 184 QRGSARLQASVF-SEQASEAQRLQHRLEQLQAELQQPP----QPIPHQKLENMQLSCNQS 238
Query: 304 SEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARG 363
E Y V E +E I+ G+IFQ+V S+RF P Y+ L+ NPSPYM ++Q
Sbjct: 239 DEEYGAVVSELQEAIRQGEIFQVVPSRRFSLP-CPAPLGPYQTLKDNNPSPYMFFMQDDD 297
Query: 364 CILVASSPEILTRVKK--NKIVNRPLAGTVRRGRTTEED------EMLETQLLKDAKQCA 415
L +SPE + +I P+AGT RGR + +E ++ D K+ A
Sbjct: 298 FTLFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELA 357
Query: 416 EHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHI 454
EH+MLVDL RND+ ++ ++GS V L V+RYS VMH+
Sbjct: 358 EHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHL 396
>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 435
Score = 114 bits (286), Expect = 2e-28
Identities = 63/372 (16%), Positives = 121/372 (32%), Gaps = 54/372 (14%)
Query: 87 VPL-YRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVME 145
+P+ +D + A ++D L+E G++ + A
Sbjct: 4 IPMPAGVNPADLAAELAAVVTESVDED----YLLYECD---------GQWVL-AAGVQAM 49
Query: 146 VIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYD 205
V + + + ++ ++ P + +D L G+ +++
Sbjct: 50 VELDSDELRVIRDGVTR-RQQWSGRPGAALG--------EAVDRLL-LETDQAFGWVAFE 99
Query: 206 TVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKA 265
+ + + ++ E +++ A
Sbjct: 100 FGVHRYGLQ------QRLAPHTPLARVFSPRTRIMVSEKEIRLFD--------------A 139
Query: 266 YAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQ 325
E +++L+A V + ++ V A + I AG +
Sbjct: 140 GIRHREAIDRLLATGVREVP--------QSRSVDVSDDPSGFRRRVAVAVDEIAAGRYHK 191
Query: 326 IVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIV-N 384
++LS+ E D YR R N LQ G + SPE++T V+ + +V
Sbjct: 192 VILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFLLQLGGIRALGYSPELVTAVRADGVVIT 251
Query: 385 RPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMN 444
PLAGT GR D + L ++K+ EH + V ++ +A GS V M
Sbjct: 252 EPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRSSLEEITDIAEPGSAAVIDFMT 311
Query: 445 VERYSHVMHISS 456
V V H+ S
Sbjct: 312 VRERGSVQHLGS 323
>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
synthase MenF {Escherichia coli [TaxId: 562]}
Length = 428
Score = 97.2 bits (241), Expect = 2e-22
Identities = 38/226 (16%), Positives = 92/226 (40%), Gaps = 9/226 (3%)
Query: 241 FDHVEKKVYVIHW--VRLDQHSSVQ-KAYAEGLEHLEKLVARKVITRSIDLHTH---HFG 294
FD + + + R ++++ ++E + + A++ I + + H
Sbjct: 99 FDPSQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLT 158
Query: 295 PPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNP 352
++ + + A + I G++ ++VL++ + + + + A R +N
Sbjct: 159 TTREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNL 218
Query: 353 SPYMTYLQARGC-ILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDA 411
+ Y Y+ G + SSPE L R + + LAGTV ++ + L L+ D
Sbjct: 219 NCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADD 278
Query: 412 KQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISST 457
K E++++V+ + ++ V +++ + + H+ T
Sbjct: 279 KNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWT 324
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 32.2 bits (73), Expect = 0.15
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 126 GVRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQ 185
G+R+ V + + V + ++ ++ + + M++ ++ D
Sbjct: 120 GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLD 179
Query: 186 IIDELPEAFCGGWVGYFSYDTVRYVE 211
D G + Y++ R V+
Sbjct: 180 NTDADYT---GKYATSTCYNSERAVD 202
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 30.5 bits (67), Expect = 0.39
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 332 FERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEI 373
F R + +P + LR NP + LV ++
Sbjct: 6 FSRASGPEPPAEFAKLRATNPVSQVKLFDGSLAWLVTKHKDV 47
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 29.0 bits (63), Expect = 1.2
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 332 FERRTFADPFEVYRALR 348
F+ RT DP E LR
Sbjct: 15 FQLRTNCDPHEDNFGLR 31
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis
elegans [TaxId: 6239]}
Length = 312
Score = 27.8 bits (61), Expect = 2.8
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 166 EVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGY-FSYDTVRYVEKKKLPFSKAPHDD 224
E D +E S++ +++ + G W G FS + + +K +
Sbjct: 9 EFSPDDLEKMNGASDEEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD----- 63
Query: 225 RSLADIHLGLYNDVLVFDHV 244
+ Y +VLV D +
Sbjct: 64 --VLVFESTTYGNVLVLDGI 81
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 26.0 bits (57), Expect = 3.6
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 300 SNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVY 344
+TS + A + + I A DI Q + FE F
Sbjct: 36 IFVTSSSTALAHKQNHKTITAKDILQTLTELDFES--FVPSLTQD 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.380
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,646,935
Number of extensions: 76791
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 12
Length of query: 460
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,199,356
Effective search space: 446160432
Effective search space used: 446160432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)