BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012579
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 178/367 (48%), Gaps = 39/367 (10%)
Query: 110 VFPANAVLYS-PDTKVPRTGELALRRAIPA-NANMKAIQASLEDISFLLRIPQRKPYGTM 167
V P +VL S P K P E LR A+P N ++ +Q LEDI+ L+I K ++
Sbjct: 19 VIPDVSVLISGPPIKDP---EALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSV 75
Query: 168 EGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVS 227
E NV++A + K I+A K+ G+ + L + G+Q +LK ++D+ D V+
Sbjct: 76 ERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKL---EAGMQDMLKIVEDRKRDAVA 132
Query: 228 VGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGE 287
L V +E G + +PE+Y+ P L GR V++ ++ D +
Sbjct: 133 PKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNI------- 185
Query: 288 PRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVL--------TEKGLDK 339
+ ++VLDGY+AP+TAGN LV YDG + ++ V+ E +D
Sbjct: 186 --EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDP 243
Query: 340 GSD--YNLPLEIMPSGQFEPLYRTALNVQDGELP------VLPLSVYGAVAMAHSEDSEE 391
++ +PLEIM +G+ P Y + L EL V+P + +G +AMA E+ E
Sbjct: 244 STEKTRTVPLEIMVTGEKTPFYGSTLE----ELGLYKAQVVIPFNAFGTMAMAR-EEFEN 298
Query: 392 YSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQ 451
S Q F+ L + D G+++VFGY T D L +K GDVI+S +++ G
Sbjct: 299 DSGSSQVFWLLKESELTPSNSNILD-GRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGL 357
Query: 452 DRLVLPN 458
+ L P+
Sbjct: 358 ENLANPS 364
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 292 ATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLN-CTNQAVLTEKGLDKGSDYNLPLEIM 350
I++ LD AP T N V G YDGT + N ++ G + G L+
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPG------LKQK 66
Query: 351 PSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGL 410
P+ P+ A N L Y +AMA + D +SA QFF + D
Sbjct: 67 PTDA--PIANEANN-------GLKNDTY-TIAMARTNDP--HSATAQFFINVNDNEFLNH 114
Query: 411 GGLSFDEGQFSVFGYTTVGRDILPQIK 437
+ ++VFG G+DI+ +IK
Sbjct: 115 SSPTPQGWGYAVFGKVVEGQDIVDKIK 141
>pdb|4ESX|A Chain A, Crystal Structure Of C. Albicans Thi5 Complexed With Plp
pdb|4ESX|B Chain B, Crystal Structure Of C. Albicans Thi5 Complexed With Plp
Length = 342
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 225 KVSVGLASSLDTVA-ELELLQAPGLSFLLPEQYKKYPRLTGRGIV-ELTIEKGDGSSFSP 282
KV +GL + + T+A + + LL E + L G GI + KG +
Sbjct: 59 KVDMGLXAMVHTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKGKRIGYVG 118
Query: 283 EAGGEPRKTATIQVVL--DGYSAPLTAGNVAKLVIDGAYD-GTRLNCTNQAVLTEKGLDK 339
E G T + D Y A NVAK +++G D G + C Q L E ++
Sbjct: 119 EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQVELEEALKEQ 178
Query: 340 GSDYN 344
G D N
Sbjct: 179 GKDSN 183
>pdb|4ESW|A Chain A, Crystal Structure Of C. Albicans Thi5 H66g Mutant
pdb|4ESW|B Chain B, Crystal Structure Of C. Albicans Thi5 H66g Mutant
Length = 342
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 225 KVSVGLASSLDTVA-ELELLQAPGLSFLLPEQYKKYPRLTGRGIV-ELTIEKGDGSSFSP 282
KV +GL + + T+A + + LL E + L G GI + KG +
Sbjct: 59 KVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKGKRIGYVG 118
Query: 283 EAGGEPRKTATIQVVL--DGYSAPLTAGNVAKLVIDGAYD-GTRLNCTNQAVLTEKGLDK 339
E G T + D Y A NVAK +++G D G + C Q L E ++
Sbjct: 119 EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQVELEEALKEQ 178
Query: 340 GSDYN 344
G D N
Sbjct: 179 GKDSN 183
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 118 YSPDTKVPRTGELALRRA---IPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKA 174
+SP+ ++ R E A+R + + ASLED++ L+R+ Q + G ++
Sbjct: 130 FSPE-EIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIR-- 186
Query: 175 LKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGG 210
++++ L + A G++ +L+ G+GG
Sbjct: 187 ------DRETALRMLKAGASRLGTSSGVALVAGEGG 216
>pdb|2D3V|A Chain A, Crystal Structure Of Leukocyte Ig-Like Receptor A5
(Lilra5LIR9ILT11)
Length = 196
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 280 FSPEAGGEPRKTATIQVVLDG-YSAPLTAGNVAKLVIDGAYDGTRLNCTNQA-----VLT 333
+SP EP + +++V+ G Y+ P + + +V G + L C ++ +LT
Sbjct: 78 YSPAGWSEP--SDPLELVVTGFYNKPTLSALPSPVVTSG--ENVTLQCGSRLRFDRFILT 133
Query: 334 EKGLDKGSDYNLPLEIMPSGQFEPLY 359
E+G D + L ++ PSGQF+ L+
Sbjct: 134 EEG-DHKLSWTLDSQLTPSGQFQALF 158
>pdb|4H67|A Chain A, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
pdb|4H67|B Chain B, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
pdb|4H67|C Chain C, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
pdb|4H67|D Chain D, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
pdb|4H67|E Chain E, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
pdb|4H67|F Chain F, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
pdb|4H67|G Chain G, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
pdb|4H67|H Chain H, Crystal Structure Of Hmp Synthase Thi5 From S. Cerevisiae
Length = 346
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 225 KVSVGLASSLDTVA-ELELLQAPGLSFLLPEQYKKYPRLTGRGIVE-LTIEKGDGSSFSP 282
KV +GL + + T+A + ++ LL E + L G GI E KG +
Sbjct: 56 KVDMGLKAMIHTLAAKARGFPVTSVASLLDEPFTGVLYLKGSGITEDFQSLKGKKIGYVG 115
Query: 283 EAGGEPRKTATIQVVL--DGYSAPLTAGNVAKLVIDGAYD-GTRLNCTNQAVLTE 334
E G T + + Y+A NVAK +I+G D G + C Q L E
Sbjct: 116 EFGKIQIDELTKHYGMKPEDYTAVRCGMNVAKYIIEGKIDAGIGIECMQQVELEE 170
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Query: 337 LDKGSDY--NLPLEIMPSGQFEPLYRTALNV---------QDGELPVLPLSVYGAVAMAH 385
LD G + N ++MP QF AL++ + G P A M
Sbjct: 250 LDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQ 309
Query: 386 SEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTV--GRDILPQIKTGDVIQ 443
+E Q ++YL D GL FD+ ++ + TT+ G +++P + +G
Sbjct: 310 AEREG------QIWYYLDDGIYGSFSGLMFDDARYPL---TTIKQGGELIPSVLSGPTCD 360
Query: 444 SAKLIEGQDRLVLP 457
S +I + ++LP
Sbjct: 361 SVDVI--AENILLP 372
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 379 GAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIK 437
G +AMA ++ +SA QFF + D G S + VF G D++ +IK
Sbjct: 81 GTLAMARTQ--APHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIK 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,873,071
Number of Sequences: 62578
Number of extensions: 599933
Number of successful extensions: 1356
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 15
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)