BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012579
(460 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82869|CYP37_ARATH Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic
OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3
Length = 466
Score = 627 bits (1617), Expect = e-179, Method: Compositional matrix adjust.
Identities = 312/452 (69%), Positives = 364/452 (80%), Gaps = 2/452 (0%)
Query: 6 SSPILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQH 65
SS ++ H+L F + R FL + P NR + F ++H + T+E +H
Sbjct: 7 SSTVVSHRLFFLHPSPLNRKFLFVKPKLPFNRTNSGDF-RMRLHSTSSKTG-TKELIHSC 64
Query: 66 DLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVP 125
+ ++TF+ G K ++ L+ATILIFVQ+ +PL L G D + PA AVLYSPDTKVP
Sbjct: 65 NSSIDSKLNTFEAGSKNLEKLVATILIFVQVWSPLPLFGLDSAYISPAEAVLYSPDTKVP 124
Query: 126 RTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSI 185
RTGELALRRAIPAN +MK IQASLEDIS+LLRIPQRKPYGTME NVKKALK+A+D+KD I
Sbjct: 125 RTGELALRRAIPANPSMKIIQASLEDISYLLRIPQRKPYGTMESNVKKALKVAIDDKDKI 184
Query: 186 LASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQA 245
LASIP DLK+KGS LY +LIDGKGGLQAL+ IK QDPDKVS+GLA+SLDTVA+LELLQA
Sbjct: 185 LASIPVDLKDKGSELYTTLIDGKGGLQALITSIKKQDPDKVSLGLAASLDTVADLELLQA 244
Query: 246 PGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPL 305
GLSFLLP+QY YPRL GRG VE+TIEK DGS+FS EAGG+ RK+AT+Q+V+DGYSAPL
Sbjct: 245 SGLSFLLPQQYLNYPRLAGRGTVEITIEKADGSTFSAEAGGDQRKSATVQIVIDGYSAPL 304
Query: 306 TAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNV 365
TAGN AKLV GAYDG +LN NQAV+TE G K ++PLE+MPSGQFEPLYRT L+V
Sbjct: 305 TAGNFAKLVTSGAYDGAKLNTVNQAVITEDGSGKVESVSVPLEVMPSGQFEPLYRTPLSV 364
Query: 366 QDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGY 425
QDGELPVLPLSVYGAVAMAHSE+SEEYS+PYQFFFYLYDKRN+GLGGLSFDEGQFSVFGY
Sbjct: 365 QDGELPVLPLSVYGAVAMAHSENSEEYSSPYQFFFYLYDKRNSGLGGLSFDEGQFSVFGY 424
Query: 426 TTVGRDILPQIKTGDVIQSAKLIEGQDRLVLP 457
T G+DIL QIKTGD+I+SAKLIEGQDRL LP
Sbjct: 425 TIAGKDILGQIKTGDIIKSAKLIEGQDRLSLP 456
>sp|Q55118|PPI3_SYNY3 Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase
sll0408 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll0408 PE=3 SV=2
Length = 379
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 170/339 (50%), Gaps = 41/339 (12%)
Query: 132 LRRAIPA-NANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKA-LKIAMDEKDSILASI 189
LR A+P N ++ +Q SLEDIS +R K + ++ +V+ A L I + E D ILA +
Sbjct: 63 LRYALPIDNPEVRRLQDSLEDISNHIRA---KRWPAIKKDVRAANLTITLKE-DKILAGV 118
Query: 190 PADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLS 249
PAD + + TL S+ K L AL + ++ +D ++V S+L + +LE L
Sbjct: 119 PADRQPEAETLLGSI---KTDLTALTEAVEAKDKEQVISFRKSALTAIGDLEALMVTDFP 175
Query: 250 FLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGN 309
F +PE++ P+L GR VE+T KG + +V+DGYSAP+ AGN
Sbjct: 176 FAIPEEFANLPQLKGRATVEMTTNKG-----------------PLTIVVDGYSAPINAGN 218
Query: 310 VAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYN-----------LPLEIMPSGQFEPL 358
LV YDG + +T+ G G + +PLEI+ G+ P+
Sbjct: 219 FVDLVQRKFYDGLPFIRSEDFFVTQAGDPPGPEAGFIDPQTKEYRAIPLEILVKGEEGPI 278
Query: 359 YRTALNVQDGELP--VLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFD 416
Y L LP LP + YGA+A+A E +E QFFF+ +D G +
Sbjct: 279 YGMTLEDAGMYLPELALPFNAYGAIALARPE-TEPNGGSSQFFFFKFDTELTP-PGFNLM 336
Query: 417 EGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLV 455
+G++SVFGY G++ L Q+ GD I SAK+I G D LV
Sbjct: 337 DGRYSVFGYVVDGKETLEQLSEGDKIVSAKVISGADNLV 375
>sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic
OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1
Length = 437
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 179/364 (49%), Gaps = 33/364 (9%)
Query: 110 VFPANAVLYS-PDTKVPRTGELALRRAIPA-NANMKAIQASLEDISFLLRIPQRKPYGTM 167
V P +VL S P K P E LR A+P N ++ +Q LEDI+ L+I K ++
Sbjct: 87 VIPDVSVLISGPPIKDP---EALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSV 143
Query: 168 EGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVS 227
E NV++A + K I+A K+ G+ + L + G+Q +LK ++D+ D V+
Sbjct: 144 ERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKL---EAGMQDMLKIVEDRKRDAVA 200
Query: 228 VGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGE 287
L V +E G + +PE+Y+ P L GR V++ ++ D +
Sbjct: 201 PKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNI------- 253
Query: 288 PRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVL--------TEKGLDK 339
+ ++VLDGY+AP+TAGN LV YDG + ++ V+ E +D
Sbjct: 254 --EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDP 311
Query: 340 GSD--YNLPLEIMPSGQFEPLYRTALN---VQDGELPVLPLSVYGAVAMAHSEDSEEYSA 394
++ +PLEIM +G+ P Y + L + ++ V+P + +G +AMA E+ E S
Sbjct: 312 STEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQV-VIPFNAFGTMAMAR-EEFENDSG 369
Query: 395 PYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRL 454
Q F+ L + D G+++VFGY T D L +K GDVI+S +++ G + L
Sbjct: 370 SSQVFWLLKESELTPSNSNILD-GRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENL 428
Query: 455 VLPN 458
P+
Sbjct: 429 ANPS 432
>sp|O49939|TLP40_SPIOL Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Spinacia
oleracea GN=TLP40 PE=1 SV=1
Length = 449
Score = 138 bits (348), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 178/366 (48%), Gaps = 39/366 (10%)
Query: 110 VFPANAVLYS-PDTKVPRTGELALRRAIPA-NANMKAIQASLEDISFLLRIPQRKPYGTM 167
V P AVL S P K P E LR A+P N ++ +Q LEDI+ LR+ K ++
Sbjct: 99 VLPDLAVLISGPPIKDP---EALLRYALPIDNKAIREVQKPLEDITESLRVLGLKALDSV 155
Query: 168 EGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVS 227
E N+K+A + + K I+A + K++G L L G G LQ + +++++ + V+
Sbjct: 156 ERNLKQASRALKNGKSLIIAGLAESKKDRGVELLDKLEAGMGELQQI---VENRNREGVA 212
Query: 228 VGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGE 287
L V +E G + +PE+Y+ P L GR +VE+ ++ D +
Sbjct: 213 PKQRELLQYVGSVEEDMVDGFPYEVPEEYQTMPLLKGRAVVEMKVKVKDNPNVD------ 266
Query: 288 PRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVL--------TEKGLDK 339
++VLDGY+AP+TAGN LV YDG + + V+ E +D
Sbjct: 267 ---NCVFRIVLDGYNAPVTAGNFLDLVERHFYDGMEIQRRDGFVVQTGDPEGPAEGFIDP 323
Query: 340 GSD--YNLPLEIMPSGQFEPLYRTALNVQDGELPV------LPLSVYGAVAMAHSEDSEE 391
++ +PLEIM G+ P+Y + L EL + LP + +G +AMA E+ E
Sbjct: 324 STEKPRTIPLEIMVEGEKVPVYGSTLE----ELGLYKAQTKLPFNAFGTMAMAR-EEFEN 378
Query: 392 YSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQ 451
S Q F+ L + D G+++VFGY T +D L +K GDVI+S + + G
Sbjct: 379 NSGSSQIFWLLKESELTPSNANILD-GRYAVFGYVTDNQDYLADLKVGDVIESVQAVSGV 437
Query: 452 DRLVLP 457
D LV P
Sbjct: 438 DNLVNP 443
>sp|P72704|PPI1_SYNY3 Probable peptidyl-prolyl cis-trans isomerase sll0227
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll0227 PE=3 SV=1
Length = 246
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 105/217 (48%), Gaps = 45/217 (20%)
Query: 256 YKKY-PRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLV 314
YK Y PRL G+ VE+ + G+P I + +DG +AP+TAGN LV
Sbjct: 55 YKDYKPRLNGKATVEMMVN------------GQP-----IIIEVDGENAPITAGNFVDLV 97
Query: 315 IDGAYDGTRLNCTNQAVLTEKGLDKGSD------------YNLPLEIMPSGQFE-----P 357
G Y+G + + + G KG N+PLEI E P
Sbjct: 98 EQGFYNGLTFHRVVDGFVAQGGDPKGDGTGGYVDKNTQRPRNIPLEIKVDPAVENAPETP 157
Query: 358 LYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDE 417
+Y AL Q G PV+ GAVAMA S+ + SA QF+F L D+ F +
Sbjct: 158 VYSRALGNQAG-FPVMLPHKTGAVAMARSQMPD--SASSQFYFTLSDE-------TGFLD 207
Query: 418 GQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRL 454
G ++VFGY T G D++ +IK GD IQSAK+I GQ+ L
Sbjct: 208 GDYAVFGYVTQGMDVVLKIKQGDKIQSAKVITGQNNL 244
>sp|Q48BG7|GLMU_PSE14 Bifunctional protein GlmU OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=glmU PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 362 ALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSF-DEGQF 420
A+ V DG L V YGA+ + + D ++ S + + L + R GG++ D +F
Sbjct: 200 AMAVNDG-LIVATEQPYGAMEVQGANDRKQLS-ELERHYQLREARRLMAGGVTLRDPARF 257
Query: 421 SVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPN 458
V G +VGRD+L I +VI K++ + ++ PN
Sbjct: 258 DVRGEVSVGRDVLIDI---NVILEGKVVIEDNVVIGPN 292
>sp|A1S909|GLNE_SHEAM Glutamate-ammonia-ligase adenylyltransferase OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=glnE PE=3
SV=1
Length = 961
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 187 ASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAP 246
A IP ++KEKGS ASL + P+ ++ LDTV EL Q
Sbjct: 7 AEIPKEIKEKGSLWLASL--------------EAHHPESLT-----GLDTVQRRELEQVA 47
Query: 247 GLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPE 283
GLS + + ++P R + + ++K D S+F E
Sbjct: 48 GLSDFIARELSRHPERIAR-LFDGLLDKVDRSAFDRE 83
>sp|Q57D43|PPI1_BRUAB Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus
biovar 1 (strain 9-941) GN=ppi PE=3 SV=1
Length = 196
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 49/154 (31%)
Query: 303 APLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKG------LDKG----------SDY-NL 345
AP + KLV +GAY+G + + + G +DKG S+Y +L
Sbjct: 51 APKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDL 110
Query: 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDK 405
P E EP R G V MA S++ SA QFF D
Sbjct: 111 PAEFSK----EPFVR------------------GTVGMARSQNPN--SANSQFFIMFDDG 146
Query: 406 RNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTG 439
F GQ++V G G D + +IK G
Sbjct: 147 --------PFLNGQYTVVGKVVSGMDAVDKIKKG 172
>sp|Q2YPY5|PPI1_BRUA2 Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus
(strain 2308) GN=ppi PE=3 SV=1
Length = 196
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 49/154 (31%)
Query: 303 APLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKG------LDKG----------SDY-NL 345
AP + KLV +GAY+G + + + G +DKG S+Y +L
Sbjct: 51 APKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDL 110
Query: 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDK 405
P E EP R G V MA S++ SA QFF D
Sbjct: 111 PAEFSK----EPFVR------------------GTVGMARSQNPN--SANSQFFIMFDDG 146
Query: 406 RNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTG 439
F GQ++V G G D + +IK G
Sbjct: 147 --------PFLNGQYTVVGKVVSGMDAVDKIKKG 172
>sp|Q8G0J9|PPI1_BRUSU Probable peptidyl-prolyl cis-trans isomerase OS=Brucella suis
biovar 1 (strain 1330) GN=ppi PE=3 SV=1
Length = 196
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 49/154 (31%)
Query: 303 APLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKG------LDKG----------SDY-NL 345
AP + KLV +GAY+G + + + G +DKG S+Y +L
Sbjct: 51 APKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDL 110
Query: 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDK 405
P E EP R G V MA S++ SA QFF D
Sbjct: 111 PAEFSK----EPFVR------------------GTVGMARSQNPN--SANSQFFIMFDDG 146
Query: 406 RNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTG 439
F GQ++V G G D + +IK G
Sbjct: 147 --------PFLNGQYTVVGKVVSGMDAVDKIKKG 172
>sp|Q8YHB5|PPI1_BRUME Probable peptidyl-prolyl cis-trans isomerase OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ppi
PE=3 SV=2
Length = 196
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 57/154 (37%), Gaps = 49/154 (31%)
Query: 303 APLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKG------LDKG----------SDY-NL 345
AP + KLV +GAY+G + + + G +DKG S+Y +L
Sbjct: 51 APKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDL 110
Query: 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDK 405
P E EP R G V MA S++ SA QFF D
Sbjct: 111 PAEFSK----EPFVR------------------GTVGMARSQNPN--SANSQFFIMFDDG 146
Query: 406 RNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTG 439
F GQ++V G G D + +IK G
Sbjct: 147 --------PFLNGQYTVVGKVVSGMDAVDKIKKG 172
>sp|P44499|PPIB_HAEIN Peptidyl-prolyl cis-trans isomerase B OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ppiB PE=3
SV=1
Length = 169
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSG 353
I++ LD AP+TA N DG Y+ T + + + G M SG
Sbjct: 11 IKIKLDFDKAPVTAENFLNYCKDGFYNNTIFHRVIDGFMIQGGG------------MESG 58
Query: 354 QFEPLYRTAL-NVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYD------KR 406
E + + N + L + G +AMA + D +SA QFF + D +
Sbjct: 59 MREKATKAPIQNEANNRLS----NKRGTIAMARTSDP--HSATAQFFINVADNDFLNYRS 112
Query: 407 NAGLGGLSFDEGQFSVFGYTTVGRDILPQIK 437
G E ++VFG G D++ +IK
Sbjct: 113 KEMFGREVVQEWGYAVFGEVVEGMDVVDKIK 143
>sp|P21964|COMT_HUMAN Catechol O-methyltransferase OS=Homo sapiens GN=COMT PE=1 SV=2
Length = 271
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 100 LCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANAN--MKAIQASLEDISFLLR 157
LCL+GW+ + + P + +L DTK R L+ A P NA ++AI E + +
Sbjct: 33 LCLIGWNEFILQPIHNLLMG-DTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMN 91
Query: 158 IPQRK 162
+ +K
Sbjct: 92 VGDKK 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,537,513
Number of Sequences: 539616
Number of extensions: 7711491
Number of successful extensions: 17427
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 17399
Number of HSP's gapped (non-prelim): 28
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)