Query 012579
Match_columns 460
No_of_seqs 263 out of 1519
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01924 cyclophilin_TLP40_like 100.0 5.1E-41 1.1E-45 313.8 18.1 159 290-450 5-176 (176)
2 COG0652 PpiB Peptidyl-prolyl c 100.0 3.3E-39 7.1E-44 297.1 14.0 137 267-446 1-140 (158)
3 KOG0883 Cyclophilin type, U bo 100.0 1.2E-39 2.7E-44 329.5 10.6 252 134-449 147-427 (518)
4 cd01928 Cyclophilin_PPIL3_like 100.0 6.2E-36 1.3E-40 273.4 16.8 133 267-439 2-134 (153)
5 cd01923 cyclophilin_RING cyclo 100.0 1.2E-35 2.6E-40 272.9 17.7 142 268-449 2-154 (159)
6 KOG0881 Cyclophilin type pepti 100.0 7.5E-37 1.6E-41 270.4 8.3 144 266-449 10-159 (164)
7 cd01927 cyclophilin_WD40 cyclo 100.0 1.6E-35 3.5E-40 269.1 16.4 123 294-439 9-131 (148)
8 cd01922 cyclophilin_SpCYP2_lik 100.0 1.5E-35 3.2E-40 268.9 16.0 122 294-438 9-130 (146)
9 KOG0546 HSP90 co-chaperone CPR 100.0 2.1E-36 4.6E-41 305.2 10.7 148 280-453 13-178 (372)
10 cd01921 cyclophilin_RRM cyclop 100.0 8.7E-35 1.9E-39 268.7 17.0 141 294-449 9-160 (166)
11 KOG0880 Peptidyl-prolyl cis-tr 100.0 5E-35 1.1E-39 274.9 15.5 163 254-453 30-202 (217)
12 PRK10903 peptidyl-prolyl cis-t 100.0 8.7E-34 1.9E-38 268.1 17.7 139 263-438 26-164 (190)
13 PRK10791 peptidyl-prolyl cis-t 100.0 1.7E-33 3.6E-38 260.5 16.9 136 268-438 2-138 (164)
14 cd01925 cyclophilin_CeCYP16-li 100.0 2.4E-33 5.1E-38 260.6 17.8 145 266-450 6-162 (171)
15 cd01920 cyclophilin_EcCYP_like 100.0 2.3E-33 5E-38 256.8 14.9 121 294-439 9-134 (155)
16 PTZ00060 cyclophilin; Provisio 100.0 1.5E-32 3.3E-37 258.0 17.7 159 258-452 8-181 (183)
17 PTZ00221 cyclophilin; Provisio 100.0 2.1E-32 4.5E-37 268.1 18.7 171 237-451 26-217 (249)
18 cd01926 cyclophilin_ABH_like c 100.0 8.5E-33 1.9E-37 254.8 15.0 137 290-450 13-163 (164)
19 PLN03149 peptidyl-prolyl isome 100.0 3.1E-32 6.8E-37 256.7 17.7 139 290-452 31-185 (186)
20 KOG0882 Cyclophilin-related pe 100.0 1.3E-32 2.8E-37 283.1 11.5 133 267-439 406-538 (558)
21 KOG0884 Similar to cyclophilin 100.0 3.7E-32 8E-37 239.5 11.1 143 267-449 2-156 (161)
22 KOG0879 U-snRNP-associated cyc 100.0 5.2E-32 1.1E-36 242.1 7.1 125 290-438 23-156 (177)
23 KOG0111 Cyclophilin-type pepti 100.0 5.6E-31 1.2E-35 251.5 11.0 139 290-452 149-296 (298)
24 cd00317 cyclophilin cyclophili 100.0 4.7E-30 1E-34 229.8 16.1 123 294-440 9-131 (146)
25 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.8E-30 4E-35 262.2 12.7 152 256-449 5-168 (439)
26 PF00160 Pro_isomerase: Cyclop 100.0 2.5E-29 5.5E-34 226.9 14.6 130 292-440 10-139 (155)
27 KOG0415 Predicted peptidyl pro 100.0 4.2E-28 9.1E-33 243.9 13.5 135 267-438 2-141 (479)
28 KOG0865 Cyclophilin type pepti 99.9 7.8E-24 1.7E-28 196.8 7.8 133 280-438 8-147 (167)
29 TIGR03042 PS_II_psbQ_bact phot 96.9 0.0075 1.6E-07 55.6 9.6 95 140-240 43-137 (142)
30 PRK00969 hypothetical protein; 95.8 0.034 7.3E-07 60.3 8.6 105 294-442 206-310 (508)
31 PLN02956 PSII-Q subunit 95.7 0.079 1.7E-06 50.8 9.7 92 143-240 90-181 (185)
32 TIGR03268 methan_mark_3 putati 95.4 0.14 3E-06 55.6 11.5 122 293-442 376-499 (503)
33 PRK00969 hypothetical protein; 95.4 0.2 4.3E-06 54.6 12.4 126 267-448 52-177 (508)
34 PF05757 PsbQ: Oxygen evolving 95.0 0.013 2.8E-07 57.0 2.1 124 109-240 63-197 (202)
35 TIGR03268 methan_mark_3 putati 94.9 0.42 9.2E-06 52.0 13.1 127 267-448 48-174 (503)
36 PLN02729 PSII-Q subunit 94.1 0.83 1.8E-05 44.8 11.9 127 107-240 81-215 (220)
37 PLN02999 photosystem II oxygen 93.7 0.35 7.6E-06 46.3 8.4 93 142-240 93-185 (190)
38 COG4070 Predicted peptidyl-pro 93.3 0.24 5.1E-06 52.6 7.2 105 294-442 205-309 (512)
39 KOG0882 Cyclophilin-related pe 93.3 0.11 2.5E-06 55.7 5.0 143 267-440 100-243 (558)
40 COG4070 Predicted peptidyl-pro 91.9 0.63 1.4E-05 49.5 8.2 22 294-315 378-399 (512)
41 PF12903 DUF3830: Protein of u 84.7 3.9 8.5E-05 38.2 7.4 22 293-314 9-30 (147)
42 PF04126 Cyclophil_like: Cyclo 64.3 10 0.00022 33.8 4.2 57 377-442 61-117 (120)
43 PRK11820 hypothetical protein; 54.5 37 0.00081 34.8 6.9 87 152-240 107-193 (288)
44 COG2164 Uncharacterized conser 45.4 37 0.00081 30.3 4.5 22 421-442 100-121 (126)
45 TIGR00255 conserved hypothetic 33.9 87 0.0019 32.3 5.8 58 183-240 138-195 (291)
46 PRK10920 putative uroporphyrin 26.5 38 0.00082 36.3 1.8 84 149-242 135-218 (390)
47 PF08559 Cut8_C: Cut8 six-heli 25.9 2E+02 0.0044 26.5 6.2 80 170-253 2-85 (143)
48 PF04375 HemX: HemX; InterPro 23.6 45 0.00098 35.1 1.7 80 151-240 131-210 (372)
49 PRK11677 hypothetical protein; 21.2 1.8E+02 0.004 26.8 4.9 53 131-195 20-72 (134)
No 1
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.1e-41 Score=313.76 Aligned_cols=159 Identities=43% Similarity=0.719 Sum_probs=140.0
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCC-----------CCCCccccCCCCCCCc
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSD-----------YNLPLEIMPSGQFEPL 358 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G-----------~~iPlEi~~~G~~~Pi 358 (460)
..|+|+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.+ +.+|+|+...+.+.|+
T Consensus 5 ~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~ 84 (176)
T cd01924 5 DNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPV 84 (176)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCCc
Confidence 34559999999999999999999999999999999999999999999986542 4689999988888999
Q ss_pred cCcccccc--CCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHh
Q 012579 359 YRTALNVQ--DGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQI 436 (460)
Q Consensus 359 yg~~~ed~--~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI 436 (460)
|+.++++. .++.+.++||.+|+|||||.+.++ ||++|||||++.+++++ +++.++|||+|+|||+|++|||||++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~-ns~~SQFfI~~~~~~~~-~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 85 YGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDP-NSASSQFFFLLKDNELT-PSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred cCcccccccccccccccccCCCCeEEEccCCCCC-CCccceEEEEecccccc-CCCCCccCCCceEEEEEecCHHHHHhh
Confidence 98776521 235677889999999999988533 69999999999976665 567999999999999999999999999
Q ss_pred hcCCceEEEEEEeC
Q 012579 437 KTGDVIQSAKLIEG 450 (460)
Q Consensus 437 ~~GD~I~sakVv~g 450 (460)
+.||+|++++|++|
T Consensus 163 ~~gd~i~~~~~~~~ 176 (176)
T cd01924 163 KVGDKIESARVVEG 176 (176)
T ss_pred cCCCEEEEEEEecC
Confidence 99999999999986
No 2
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-39 Score=297.07 Aligned_cols=137 Identities=32% Similarity=0.422 Sum_probs=115.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCC-CCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGS-DYNL 345 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~-G~~i 345 (460)
+|.++|++|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+. |..
T Consensus 1 ~v~~~t~~G~-----------------I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~g- 62 (158)
T COG0652 1 TVILETNKGD-----------------ITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTG- 62 (158)
T ss_pred CceeeccCCC-----------------EEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCC-
Confidence 3688999988 999999999999999999999999999999999999999999998754 322
Q ss_pred CccccCCCCCCCccCccccccCCCCCCccCC--cCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEE
Q 012579 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLS--VYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVF 423 (460)
Q Consensus 346 PlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~--~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVF 423 (460)
.+.| +|.+ |.+...++ .+|+|||||.+.| |||+|||||++.+ .+||||+|+||
T Consensus 63 ----------g~~~--~f~~---E~~~~~~~~~~~G~lsMA~~g~P--~t~~SQFFI~~~~--------~~~Ld~~ytVF 117 (158)
T COG0652 63 ----------GPGP--PFKD---ENFALNGDRHKRGTLSMARAGDP--NSNGSQFFITVVD--------NPFLDGKYTVF 117 (158)
T ss_pred ----------CCCC--CCcc---cccccccccCCcceEeEcccCCc--CCccCeEEEEecC--------CcccCCCCcEE
Confidence 1222 2333 44443344 4999999999943 6999999999987 89999999999
Q ss_pred EEEeccchHHHHhhcCCceEEEE
Q 012579 424 GYTTVGRDILPQIKTGDVIQSAK 446 (460)
Q Consensus 424 G~VveG~DVL~kI~~GD~I~sak 446 (460)
|+|++|||||++|+.||.+.+.+
T Consensus 118 G~Vv~GmdvvdkI~~~~~~~~~~ 140 (158)
T COG0652 118 GQVVEGMDVVDKIKNGDTDDSGY 140 (158)
T ss_pred EEEehhHHHHHHHHcCCccCCCc
Confidence 99999999999999988776554
No 3
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=329.50 Aligned_cols=252 Identities=20% Similarity=0.270 Sum_probs=189.2
Q ss_pred hcCC-CChhHHHHHHh--Hhh--------hhhccCCCCCCCCcchhhhHH-HHHHHHhhchhhHhhcCCccchhhHHHHH
Q 012579 134 RAIP-ANANMKAIQAS--LED--------ISFLLRIPQRKPYGTMEGNVK-KALKIAMDEKDSILASIPADLKEKGSTLY 201 (460)
Q Consensus 134 ~alP-~n~~ir~iQ~~--LE~--------i~~~Lr~~~~k~~~~~~~~v~-~a~~~l~~~~~~il~~vp~~~~~~~~~l~ 201 (460)
...| .+.||.+||++ ||. |..+|++-.+-.-. +.+|.. ..++.++...++.|..|..+.++.
T Consensus 147 tdepFtR~DiItiQdP~~lek~~~~~F~hvk~~lk~~~eeek~-~~~dpa~~~~k~~n~e~ks~l~el~k~~~p~----- 220 (518)
T KOG0883|consen 147 TDEPFTRADIITIQDPNNLEKFNMSDFYHVKKNLKTADEEEKK-AKKDPALGYIKAMNLETKSTLPELSKEYQPK----- 220 (518)
T ss_pred ccCCcchhceeeecCcchhhccchhhHHHHhcccccCcHHHHH-hhcCchhhhhhhcchhhhhhhHHHhhhhccc-----
Confidence 4567 78999999998 775 67777763322111 122222 344444444444444443333332
Q ss_pred HHHhcchhhHHHHHHHhhhcCCcchhhhHHh-----------hHHHHHHHHHhhcCCCCCcCccccccCCCcCCCceEEE
Q 012579 202 ASLIDGKGGLQALLKCIKDQDPDKVSVGLAS-----------SLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVEL 270 (460)
Q Consensus 202 ~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~~-----------~L~~v~~lE~~~~~~~p~~vP~ey~~lP~L~GratV~l 270 (460)
..+.. ...+..|++..++-+ ++..|...|...++ .+--.+.+++....|.|
T Consensus 221 -------~~~a~----t~~~~aD~~naahyStG~vaasfTSTam~PvT~neaaiid-------~d~~ry~rvKkkgyvrl 282 (518)
T KOG0883|consen 221 -------KSIAS----TMKRSADKINAAHYSTGAVAASFTSTAMTPVTKNEAAIID-------EDDVRYTRVKKKGYVRL 282 (518)
T ss_pred -------hhhhh----hccccchhhhhhhccccceeceeccceeeecccchhhhcc-------chhhhhccccccceEEE
Confidence 11111 123445666666532 35556666666665 33336778899999999
Q ss_pred EEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCcccc
Q 012579 271 TIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIM 350 (460)
Q Consensus 271 ~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~ 350 (460)
.|+.|+ |.|||+++.+|.+|+||+.||++|||+|+.|||.+.+||||||||+|+|.+
T Consensus 283 ~Tn~G~-----------------lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~G------ 339 (518)
T KOG0883|consen 283 VTNHGP-----------------LNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRG------ 339 (518)
T ss_pred eccCCc-----------------eeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCC------
Confidence 999998 999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccc
Q 012579 351 PSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGR 430 (460)
Q Consensus 351 ~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~ 430 (460)
++++||.+|.| +..+.|.|+.||+|||||+|+ |+|||||||++.. +-+||++||+||+||.|+
T Consensus 340 ----GeSiWgKpFkD--Ef~~~l~H~gRGvlSMANsGp---nTNgSQFFItyrs--------ckhLd~KHTIFGrvVGGl 402 (518)
T KOG0883|consen 340 ----GESIWGKPFKD--EFCSNLSHDGRGVLSMANSGP---NTNGSQFFITYRS--------CKHLDNKHTIFGRVVGGL 402 (518)
T ss_pred ----CccccCCcccc--ccCCCCCcCCcceEeeccCCC---CCCCceEEEEecc--------hhhccccceeeeeeeccH
Confidence 58999999996 577889999999999999998 8999999999988 899999999999999999
Q ss_pred hHHHHhhc-----CCc-eEEEEEEe
Q 012579 431 DILPQIKT-----GDV-IQSAKLIE 449 (460)
Q Consensus 431 DVL~kI~~-----GD~-I~sakVv~ 449 (460)
|+|.+|+. +|. +++|+|.+
T Consensus 403 dtL~amEnve~d~~DrP~e~I~i~~ 427 (518)
T KOG0883|consen 403 DTLTAMENVETDEKDRPKEEIKIED 427 (518)
T ss_pred HHHHHHhcCCCCCCCCcccceEEee
Confidence 99999987 453 55555543
No 4
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.2e-36 Score=273.36 Aligned_cols=133 Identities=22% Similarity=0.297 Sum_probs=116.5
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
+|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.|||++++|++||||+.++|..
T Consensus 2 ~v~l~T~~G~-----------------i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g-- 62 (153)
T cd01928 2 SVTLHTNLGD-----------------IKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKG-- 62 (153)
T ss_pred EEEEEEcccc-----------------EEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCC--
Confidence 4789999987 999999999999999999999999999999999999999999998755432
Q ss_pred ccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEE
Q 012579 347 LEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYT 426 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~V 426 (460)
+.++|+.++++ +..+.++|+.+|+||||+.++ ++++|||||++.+ .++|||+|+|||+|
T Consensus 63 --------~~~~~~~~~~~--e~~~~~~~~~~G~v~ma~~~~---~~~~SqFfI~~~~--------~~~Ld~~~tvFG~V 121 (153)
T cd01928 63 --------GESIWGKKFED--EFRETLKHDSRGVVSMANNGP---NTNGSQFFITYAK--------QPHLDGKYTVFGKV 121 (153)
T ss_pred --------CCccCCCcccc--ccccCCCcCCCcEEEEeeCCC---CCcccEEEEEeCC--------CcccCCCceEEEEE
Confidence 23567777765 234567788999999999875 6899999999987 78999999999999
Q ss_pred eccchHHHHhhcC
Q 012579 427 TVGRDILPQIKTG 439 (460)
Q Consensus 427 veG~DVL~kI~~G 439 (460)
++|||||++|+..
T Consensus 122 ~~G~dvl~~I~~~ 134 (153)
T cd01928 122 IDGFETLDTLEKL 134 (153)
T ss_pred EeCHHHHHHHHcC
Confidence 9999999999873
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.2e-35 Score=272.91 Aligned_cols=142 Identities=25% Similarity=0.339 Sum_probs=122.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCc
Q 012579 268 VELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPL 347 (460)
Q Consensus 268 V~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPl 347 (460)
|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.|||++++|++|+||+.++|..
T Consensus 2 v~~~T~~G~-----------------i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~--- 61 (159)
T cd01923 2 VRLHTNKGD-----------------LNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRG--- 61 (159)
T ss_pred EEEEEcccc-----------------EEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCC---
Confidence 789999987 999999999999999999999999999999999999999999998755432
Q ss_pred cccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEe
Q 012579 348 EIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTT 427 (460)
Q Consensus 348 Ei~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~Vv 427 (460)
+.++|+.++++ +..+.++|+.+|+||||++++ |+++|||||++.+ .++|||+|+|||+|+
T Consensus 62 -------~~~~~g~~~~~--E~~~~~~h~~~G~v~ma~~~~---~s~~sqFfIt~~~--------~~~Ld~~~~vFG~V~ 121 (159)
T cd01923 62 -------GESIWGKPFKD--EFKPNLSHDGRGVLSMANSGP---NTNGSQFFITYRS--------CKHLDGKHTVFGRVV 121 (159)
T ss_pred -------CccccCCccCc--ccccCcCcCCCcEEEEeeCCC---CCcccEEEEECCC--------CcccCCCccEEEEEE
Confidence 34677777765 335667889999999999875 6999999999977 899999999999999
Q ss_pred ccchHHHHhhcCC-----------ceEEEEEEe
Q 012579 428 VGRDILPQIKTGD-----------VIQSAKLIE 449 (460)
Q Consensus 428 eG~DVL~kI~~GD-----------~I~sakVv~ 449 (460)
+|||+|++|+... +|.++.|+.
T Consensus 122 ~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 122 GGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred cCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 9999999999742 366666654
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-37 Score=270.41 Aligned_cols=144 Identities=23% Similarity=0.310 Sum_probs=130.0
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCC
Q 012579 266 GIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNL 345 (460)
Q Consensus 266 atV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~i 345 (460)
..|+++|+-|. |++|||-..||+||.||..|+++|||||+.|||++++|||||||++|+|+.
T Consensus 10 ~~V~LeTsmG~-----------------i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRG- 71 (164)
T KOG0881|consen 10 PNVTLETSMGK-----------------ITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRG- 71 (164)
T ss_pred CeEEEeecccc-----------------eehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCC-
Confidence 46999999987 999999999999999999999999999999999999999999999998864
Q ss_pred CccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEE
Q 012579 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGY 425 (460)
Q Consensus 346 PlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~ 425 (460)
+.++||..|+| +-...|.|...|.|||||.++ |+|||||||+|.+ ++||||+||+||+
T Consensus 72 ---------GaSIYG~kF~D--Ei~~dLkhTGAGILsMANaGP---nTNgSQFFiTLAP--------t~~LDGKHTIFGR 129 (164)
T KOG0881|consen 72 ---------GASIYGDKFED--EIHSDLKHTGAGILSMANAGP---NTNGSQFFITLAP--------TQWLDGKHTIFGR 129 (164)
T ss_pred ---------ccccccchhhh--hhhhhhcccchhhhhhhccCC---CCCCceEEEEecC--------ccccCCcceeehh
Confidence 57899999997 346778899999999999997 7999999999988 9999999999999
Q ss_pred EeccchHHHHhhcC-----C-ceEEEEEEe
Q 012579 426 TTVGRDILPQIKTG-----D-VIQSAKLIE 449 (460)
Q Consensus 426 VveG~DVL~kI~~G-----D-~I~sakVv~ 449 (460)
|..||+|++.+... | .|..+||+.
T Consensus 130 V~~Gm~vikr~G~v~Td~~DRPi~~~kIik 159 (164)
T KOG0881|consen 130 VCSGMEVIKRMGMVETDNSDRPIDEVKIIK 159 (164)
T ss_pred hhhhHHHHHhhcceecCCCCCCccceeeEe
Confidence 99999999998753 3 366666664
No 7
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.6e-35 Score=269.13 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=108.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCc
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVL 373 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~L 373 (460)
|+|+||.+.||+||+||++||+.|||||+.|||++++|++||||+.++|.. +.++|+.++++ +..+.+
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g----------~~~~~~~~~~~--e~~~~~ 76 (148)
T cd01927 9 IHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTG----------GESIWGKEFED--EFSPSL 76 (148)
T ss_pred EEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCC----------CCcccCCcccc--cccccc
Confidence 999999999999999999999999999999999999999999998654432 34677777765 234577
Q ss_pred cCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcC
Q 012579 374 PLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTG 439 (460)
Q Consensus 374 p~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~G 439 (460)
+|+.+|+||||+.++ |+++|||||++.+ .++|||+|+|||+|++|||||++|+..
T Consensus 77 ~h~~~G~l~ma~~~~---~s~~SqFfIt~~~--------~p~Ldg~~tvFG~V~~G~dvl~~I~~~ 131 (148)
T cd01927 77 KHDRPYTLSMANAGP---NTNGSQFFITTVA--------TPWLDNKHTVFGRVVKGMDVVQRIENV 131 (148)
T ss_pred CcCCCeEEEEeeCCC---CCCCceEEEEcCC--------CcccCCCceEEEEEEcCHHHHHHHHcC
Confidence 888899999999875 6999999999977 889999999999999999999999874
No 8
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.5e-35 Score=268.94 Aligned_cols=122 Identities=22% Similarity=0.314 Sum_probs=108.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCc
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVL 373 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~L 373 (460)
|+|+||.+.||+||+||++||+.|||||+.|||++++|++||||+.+.|.. ..++|+.++++ +..+.+
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~----------~~~~~~~~~~~--e~~~~~ 76 (146)
T cd01922 9 ITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRG----------GASIYGKKFED--EIHPEL 76 (146)
T ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCC----------cccccCCCccc--ccccCc
Confidence 999999999999999999999999999999999999999999998654432 24677777775 235678
Q ss_pred cCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhc
Q 012579 374 PLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKT 438 (460)
Q Consensus 374 p~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~ 438 (460)
+|+.+|+||||+.++ ++++|||||++.+ .|+|||+|+|||+|++|||||++|+.
T Consensus 77 ~h~~~G~l~ma~~~~---~s~~sqFfIt~~~--------~p~Ld~~~tvFG~V~~G~dvl~~I~~ 130 (146)
T cd01922 77 KHTGAGILSMANAGP---NTNGSQFFITLAP--------TPWLDGKHTIFGRVSKGMKVIENMVE 130 (146)
T ss_pred CCCCCeEEEEeeCCC---CCCccEEEEEcCC--------CcccCCCCCEEEEEEcCHHHHHHHHh
Confidence 889999999999875 6999999999987 89999999999999999999999997
No 9
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=305.23 Aligned_cols=148 Identities=22% Similarity=0.293 Sum_probs=128.0
Q ss_pred CCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh--cC---------CcCCceeeEeeCCcEEecCCCC-CCCCCCCc
Q 012579 280 FSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI--DG---------AYDGTRLNCTNQAVLTEKGLDK-GSDYNLPL 347 (460)
Q Consensus 280 f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~G---------fYDGt~FhRvv~~fviQgGd~~-~~G~~iPl 347 (460)
||+++||++ .|+|+|+||.+.||+||+||..||. .| .|.|+.||||+++|||||||.. |.|.
T Consensus 13 fDISI~ge~--~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt---- 86 (372)
T KOG0546|consen 13 FDISIGGEP--AGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT---- 86 (372)
T ss_pred EEEEeCCcc--cceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC----
Confidence 444455664 6999999999999999999999994 34 4999999999999999999975 2332
Q ss_pred cccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEe
Q 012579 348 EIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTT 427 (460)
Q Consensus 348 Ei~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~Vv 427 (460)
.+++|||.+|+| |++.|.|+.+++|||||.|+ ||||||||||+.+ +|||||.|+|||+||
T Consensus 87 ------GGeSIYG~~FdD---EnF~lKHdrpflLSMAN~Gp---NTNgSQFFITT~p--------~PHLdGkHVVFGqVI 146 (372)
T KOG0546|consen 87 ------GGESIYGEKFDD---ENFELKHDRPFLLSMANRGP---NTNGSQFFITTVP--------TPHLDGKHVVFGQVI 146 (372)
T ss_pred ------Cccccccccccc---ccceeccCcchhhhhhcCCC---CCCCcceEEeCCC--------CCCcCCceeEEeeEe
Confidence 258999999998 99999999999999999996 7999999999988 999999999999999
Q ss_pred ccchHHHHhhc-----CC-ceEEEEEEeCCcc
Q 012579 428 VGRDILPQIKT-----GD-VIQSAKLIEGQDR 453 (460)
Q Consensus 428 eG~DVL~kI~~-----GD-~I~sakVv~g~e~ 453 (460)
.|++||+.|+. .+ ....|.|.++++-
T Consensus 147 ~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel 178 (372)
T KOG0546|consen 147 KGKEVVREIENLETDEESKPLADVVISDCGEL 178 (372)
T ss_pred echhHHHHHhccccccCCCCccceEecccccc
Confidence 99999999997 22 4667888777753
No 10
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=8.7e-35 Score=268.69 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=109.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCc
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVL 373 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~L 373 (460)
|+|+||.+.||+||+||++||+.|||||+.||||+++|++||||+.+.|..... +. +......+..+++ +..+.+
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~-~~--~~~~~~~~~~~~~--e~~~~~ 83 (166)
T cd01921 9 LVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGES-IY--SQLYGRQARFFEP--EILPLL 83 (166)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcc-cc--cccccccCcccCc--ccCCcc
Confidence 999999999999999999999999999999999999999999998754432100 00 0000001112222 234677
Q ss_pred cCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCC-----------ce
Q 012579 374 PLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGD-----------VI 442 (460)
Q Consensus 374 p~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD-----------~I 442 (460)
+|+.+|+|||||.++ |+++|||||++.+. +++|||+|+|||+|++|||||++|+..+ +|
T Consensus 84 ~h~~~G~l~ma~~~~---~~~~SQFfIt~~~~-------~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I 153 (166)
T cd01921 84 KHSKKGTVSMVNAGD---NLNGSQFYITLGEN-------LDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRI 153 (166)
T ss_pred ccCCceEEEEeECCC---CCccceEEEEcCCC-------CcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEE
Confidence 899999999999885 58999999999751 7899999999999999999999998632 46
Q ss_pred EEEEEEe
Q 012579 443 QSAKLIE 449 (460)
Q Consensus 443 ~sakVv~ 449 (460)
+++.|+.
T Consensus 154 ~~~~i~~ 160 (166)
T cd01921 154 KHTHILD 160 (166)
T ss_pred EEEEEEC
Confidence 7777665
No 11
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-35 Score=274.95 Aligned_cols=163 Identities=21% Similarity=0.292 Sum_probs=135.5
Q ss_pred cccccCCCcCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh---cCC-cCCceeeEeeC
Q 012579 254 EQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI---DGA-YDGTRLNCTNQ 329 (460)
Q Consensus 254 ~ey~~lP~L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~---~Gf-YDGt~FhRvv~ 329 (460)
..|..-|.++-+ |.|.++.|+ .+.|+|+|.||+..+|+||+||..||. .|| |.|+.||||++
T Consensus 30 ~~~~~~p~vT~k--V~fdi~~g~------------~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~ 95 (217)
T KOG0880|consen 30 KKYEPGPKVTHK--VYFDIEIGG------------EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIP 95 (217)
T ss_pred cccCCCCcceeE--EEEEEEECC------------EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeec
Confidence 345566666544 556666654 257999999999999999999999997 344 99999999999
Q ss_pred CcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCC
Q 012579 330 AVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAG 409 (460)
Q Consensus 330 ~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~ 409 (460)
+|||||||.+. |..+ .+-++||.+|+| |+..|.|+.+|.|||||.++ |+||||||||+..
T Consensus 96 nfmIQGGd~t~-g~gt--------Gg~SIyG~~F~D---ENf~LkH~rpG~lSMAn~Gp---DtNGsQFfItT~~----- 155 (217)
T KOG0880|consen 96 NFMIQGGDFTK-GDGT--------GGKSIYGEKFPD---ENFKLKHDRPGRLSMANAGP---DTNGSQFFITTVK----- 155 (217)
T ss_pred CceeecCcccc-CCCC--------CCeEeecCCCCC---ccceeecCCCceEeeeccCC---CCCCceEEEEecC-----
Confidence 99999999752 2111 135799999998 99999999999999999997 6999999999988
Q ss_pred CCCCCCCCCCccEEEEEeccchHHHHhhc-----CCc-eEEEEEEeCCcc
Q 012579 410 LGGLSFDEGQFSVFGYTTVGRDILPQIKT-----GDV-IQSAKLIEGQDR 453 (460)
Q Consensus 410 p~g~~~LDG~ytVFG~VveG~DVL~kI~~-----GD~-I~sakVv~g~e~ 453 (460)
++||||+|+|||+|++|||+|.+|+. +|+ .+.++|.+..|-
T Consensus 156 ---t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l 202 (217)
T KOG0880|consen 156 ---TPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGEL 202 (217)
T ss_pred ---CccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcc
Confidence 88999999999999999999999987 454 677888877653
No 12
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=8.7e-34 Score=268.12 Aligned_cols=139 Identities=24% Similarity=0.279 Sum_probs=109.9
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCC
Q 012579 263 TGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSD 342 (460)
Q Consensus 263 ~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G 342 (460)
.++.+|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.|||++++|++|||+..+.+
T Consensus 26 ~~~~~v~l~T~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~ 88 (190)
T PRK10903 26 KGDPHVLLTTSAGN-----------------IELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQM 88 (190)
T ss_pred CCCcEEEEEecccc-----------------EEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCC
Confidence 57778999999988 9999999999999999999999999999999999999999999875321
Q ss_pred CCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccE
Q 012579 343 YNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSV 422 (460)
Q Consensus 343 ~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytV 422 (460)
. ...++.++.+ |.....||.+|+|||||.+.+ |+++|||||++.+..... ..++||+|+|
T Consensus 89 ~------------~~~~~~~~~~---e~~~~l~~~~G~lama~~~~~--~sn~SQFfIt~~~~~~ld---~~~~dg~ytv 148 (190)
T PRK10903 89 Q------------QKKPNPPIKN---EADNGLRNTRGTIAMARTADK--DSATSQFFINVADNAFLD---HGQRDFGYAV 148 (190)
T ss_pred C------------CCCCCCcccC---cccccCcCCCcEEEeCCCCCC--CCcccEEEEECcCccccc---CCccCCCccE
Confidence 1 0112223332 222234788999999997643 599999999999832211 0123469999
Q ss_pred EEEEeccchHHHHhhc
Q 012579 423 FGYTTVGRDILPQIKT 438 (460)
Q Consensus 423 FG~VveG~DVL~kI~~ 438 (460)
||+|++|||||++|+.
T Consensus 149 FG~V~eG~dvl~~I~~ 164 (190)
T PRK10903 149 FGKVVKGMDVADKISQ 164 (190)
T ss_pred EEEEecCHHHHHHHHc
Confidence 9999999999999997
No 13
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.7e-33 Score=260.45 Aligned_cols=136 Identities=22% Similarity=0.252 Sum_probs=105.8
Q ss_pred EEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCc
Q 012579 268 VELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPL 347 (460)
Q Consensus 268 V~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPl 347 (460)
|.|+|+.|+ |+|+||.+.||+||+||++||+.|||||+.||||+++|++|||+.. .|..
T Consensus 2 v~~~T~~G~-----------------i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~-~~~~--- 60 (164)
T PRK10791 2 VTFHTNHGD-----------------IVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE-PGMK--- 60 (164)
T ss_pred EEEEEcccc-----------------EEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcC-CCCC---
Confidence 678999987 9999999999999999999999999999999999999999999863 1211
Q ss_pred cccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCC-CccEEEEE
Q 012579 348 EIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEG-QFSVFGYT 426 (460)
Q Consensus 348 Ei~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG-~ytVFG~V 426 (460)
...++.++.+ +..+.+ +|.+|+|||||.+.+ |+++|||||++.+.+... .+.+.+|| +|+|||+|
T Consensus 61 --------~~~~~~~~~~--e~~~~~-~~~~G~lsma~~~~p--~s~~SQFfI~~~~~~~ld-~~~~~~d~~~~tvFG~V 126 (164)
T PRK10791 61 --------QKATKEPIKN--EANNGL-KNTRGTLAMARTQAP--HSATAQFFINVVDNDFLN-FSGESLQGWGYCVFAEV 126 (164)
T ss_pred --------cCCCCCCcCC--cccccc-cCCCcEEEECCCCCc--CCccceEEEEecCchhhc-ccccccCCCCccEEEEE
Confidence 0112233332 122333 568999999998643 599999999999843321 11245566 79999999
Q ss_pred eccchHHHHhhc
Q 012579 427 TVGRDILPQIKT 438 (460)
Q Consensus 427 veG~DVL~kI~~ 438 (460)
++|||||++|+.
T Consensus 127 ~eG~dvl~~I~~ 138 (164)
T PRK10791 127 VEGMDVVDKIKG 138 (164)
T ss_pred ecCHHHHHHHHc
Confidence 999999999985
No 14
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.4e-33 Score=260.60 Aligned_cols=145 Identities=26% Similarity=0.313 Sum_probs=122.8
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCC
Q 012579 266 GIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNL 345 (460)
Q Consensus 266 atV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~i 345 (460)
++|.|+|+.|+ |+|+||.+.||+||+||++||+.|||||+.|||++++|++|||++.++|..
T Consensus 6 ~~v~i~Ts~G~-----------------i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g- 67 (171)
T cd01925 6 GKVILKTTAGD-----------------IDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTG- 67 (171)
T ss_pred cEEEEEEcccc-----------------EEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCcc-
Confidence 34889999987 999999999999999999999999999999999999999999998755432
Q ss_pred CccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEE
Q 012579 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGY 425 (460)
Q Consensus 346 PlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~ 425 (460)
+.++|+.++++ +..+.+.|+.+|+||||+.++ ++++|||||++.+ .++|||+|+|||+
T Consensus 68 ---------~~s~~g~~~~~--E~~~~~~~~~~G~l~ma~~g~---~s~~sqFfIt~~~--------~~~ldg~~tvFG~ 125 (171)
T cd01925 68 ---------GESIYGEPFKD--EFHSRLRFNRRGLVGMANAGD---DSNGSQFFFTLDK--------ADELNNKHTLFGK 125 (171)
T ss_pred ---------CcccCCCccCc--ccccCcCCCCCcEEEECcCCC---CCcccEEEEEcCC--------CcccCCCceEEEE
Confidence 24577777765 234567799999999999886 5999999999987 8899999999999
Q ss_pred Ee-ccchHHHHhhcCC-----------ceEEEEEEeC
Q 012579 426 TT-VGRDILPQIKTGD-----------VIQSAKLIEG 450 (460)
Q Consensus 426 Vv-eG~DVL~kI~~GD-----------~I~sakVv~g 450 (460)
|+ +|+++|++|+..+ +|.++.|+..
T Consensus 126 V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~ 162 (171)
T cd01925 126 VTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLEN 162 (171)
T ss_pred EEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcC
Confidence 99 4577889998732 4778877653
No 15
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.3e-33 Score=256.76 Aligned_cols=121 Identities=26% Similarity=0.233 Sum_probs=98.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCc
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVL 373 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~L 373 (460)
|+|+||++.||+||+||++||+.|||||+.||||+++|++|||++...+.. ..++.++.+ |....
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~------------~~~~~~~~~---e~~~~ 73 (155)
T cd01920 9 IVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ------------KETLKPIKN---EAGNG 73 (155)
T ss_pred EEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc------------cccCCcccC---ccccc
Confidence 999999999999999999999999999999999999999999987533211 112223332 22223
Q ss_pred cCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCC-----CCccEEEEEeccchHHHHhhcC
Q 012579 374 PLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDE-----GQFSVFGYTTVGRDILPQIKTG 439 (460)
Q Consensus 374 p~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LD-----G~ytVFG~VveG~DVL~kI~~G 439 (460)
.++.+|+||||+.+.+ |+++|||||++.+ .++|| |+|||||+|++|||||++|+..
T Consensus 74 ~~~~~G~v~ma~~~~~--~s~~SqFfI~~~~--------~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~ 134 (155)
T cd01920 74 LSNTRGTIAMARTNAP--DSATSQFFINLKD--------NASLDYQNEQWGYTVFGEVTEGMDVVDKIAGV 134 (155)
T ss_pred ccCCceEEEECCCCCC--CCccceEEEECCC--------chhcCCcccCCCccEEEEEecCHHHHHHHHcC
Confidence 4689999999997643 5999999999988 66777 4899999999999999999873
No 16
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.5e-32 Score=257.99 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=127.5
Q ss_pred cCCCcCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh---------cCCcCCceeeEee
Q 012579 258 KYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI---------DGAYDGTRLNCTN 328 (460)
Q Consensus 258 ~lP~L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~---------~GfYDGt~FhRvv 328 (460)
++|....+..|.|.+..+. ...|+|+|+||.+.||+||+||++||+ .+||||+.||||+
T Consensus 8 ~~~~~~~~~~v~~di~i~~------------~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi 75 (183)
T PTZ00060 8 SFPEMSKRPKVFFDISIDN------------APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRII 75 (183)
T ss_pred CCcccCCCCEEEEEEEECC------------EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEc
Confidence 3444455566777777653 136889999999999999999999996 5799999999999
Q ss_pred CCcEEecCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCcc
Q 012579 329 QAVLTEKGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRN 407 (460)
Q Consensus 329 ~~fviQgGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~ 407 (460)
++|++|+||.. +.|. .+.++|+.++++ |...++|+.+|+||||+.++ |+++|||||++.+
T Consensus 76 ~~~~iqgGd~~~~~g~----------~g~~~~g~~~~~---e~~~~~h~~~G~lsma~~g~---~~~~sqFfIt~~~--- 136 (183)
T PTZ00060 76 PQFMCQGGDITNHNGT----------GGESIYGRKFTD---ENFKLKHDQPGLLSMANAGP---NTNGSQFFITTVP--- 136 (183)
T ss_pred CCCeEEeCCccCCCCC----------CCCcccccccCC---ccccccCCCCCEEEeccCCC---CCCcceEEEEeCC---
Confidence 99999999864 2222 134567776664 55677888899999999875 6999999999987
Q ss_pred CCCCCCCCCCCCccEEEEEeccchHHHHhhcCC-----ceEEEEEEeCCc
Q 012579 408 AGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGD-----VIQSAKLIEGQD 452 (460)
Q Consensus 408 ~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD-----~I~sakVv~g~e 452 (460)
.++|||+|+|||+|++|||||++|+... .++.|+|.++.+
T Consensus 137 -----~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~ 181 (183)
T PTZ00060 137 -----CPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGE 181 (183)
T ss_pred -----CcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEEeEE
Confidence 8899999999999999999999998632 366777777653
No 17
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.1e-32 Score=268.15 Aligned_cols=171 Identities=16% Similarity=0.064 Sum_probs=134.1
Q ss_pred HHHHHHhhcCCCCCcCccccccCCCc---CCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHH
Q 012579 237 VAELELLQAPGLSFLLPEQYKKYPRL---TGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKL 313 (460)
Q Consensus 237 v~~lE~~~~~~~p~~vP~ey~~lP~L---~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~L 313 (460)
.-++|+--+..++ .|...++. ..+..|.|+|+.|+ ...|+|+|+||.+.||+||+||+.|
T Consensus 26 ~~~~~~~~~~~w~-----~~~~~~~~~~~~~~~rVfldisig~------------~~~GrIvIELf~d~aP~T~eNF~~L 88 (249)
T PTZ00221 26 YNDIEERRLKEWE-----NYQKSHRMKEEQNSCRAFLDISIGD------------VLAGRLVFELFEDVVPETVENFRAL 88 (249)
T ss_pred HhHHHhccceecc-----chhhccccccCCCCCEEEEEEeeCC------------eecceEEEEEeCCCCcHHHHHHHHH
Confidence 3456666665552 23333332 34556888998875 2478999999999999999999999
Q ss_pred HhcC-----------CcCCceeeEeeCC-cEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceE
Q 012579 314 VIDG-----------AYDGTRLNCTNQA-VLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAV 381 (460)
Q Consensus 314 v~~G-----------fYDGt~FhRvv~~-fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtL 381 (460)
|+.. +|+|+.||||+++ |++|+||+.+.| ..+||.+|++ |...++|+.+|+|
T Consensus 89 c~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~g-------------~s~~G~~f~d---E~~~~~h~~~G~L 152 (249)
T PTZ00221 89 ITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN-------------VSSTGTPIAD---EGYRHRHTERGLL 152 (249)
T ss_pred hhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCCC-------------ccCCCCcccC---ccccccCCCCCEE
Confidence 9732 3999999999975 899999875322 2457777776 6667889999999
Q ss_pred EEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcC--C----ceEEEEEEeCC
Q 012579 382 AMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTG--D----VIQSAKLIEGQ 451 (460)
Q Consensus 382 AMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~G--D----~I~sakVv~g~ 451 (460)
|||+.++ |++||||||++.+ .++|||+|+|||+|++|||||++|+.. | .+..|+|.+..
T Consensus 153 sMan~Gp---ntngSQFfITl~~--------~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cg 217 (249)
T PTZ00221 153 TMISEGP---HTSGSVFGITLGP--------SPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCG 217 (249)
T ss_pred EeCcCCC---CCccceEEEECCC--------CCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECe
Confidence 9999885 6999999999987 899999999999999999999999862 3 35566666654
No 18
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=8.5e-33 Score=254.81 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=114.9
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHHh--cC------CcCCceeeEeeCCcEEecCCCC-CCCCCCCccccCCCCCCCccC
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLVI--DG------AYDGTRLNCTNQAVLTEKGLDK-GSDYNLPLEIMPSGQFEPLYR 360 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~G------fYDGt~FhRvv~~fviQgGd~~-~~G~~iPlEi~~~G~~~Piyg 360 (460)
..|+|+|+||.+.||+||+||++||+ +| |||++.|||++++|++|+||+. ++|.. ..++|+
T Consensus 13 ~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~----------~~~~~g 82 (164)
T cd01926 13 PAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTG----------GKSIYG 82 (164)
T ss_pred eceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCC----------CCcccC
Confidence 46889999999999999999999997 45 8999999999999999999864 22321 245777
Q ss_pred ccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCC
Q 012579 361 TALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGD 440 (460)
Q Consensus 361 ~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD 440 (460)
.++++ |...++|+.+|+||||+.++ |+++|||||++.+ .++|||+|+|||+|++|||||++|+...
T Consensus 83 ~~~~~---e~~~~~h~~~G~lsma~~~~---~~~~sqFfIt~~~--------~~~Ld~~~tvFG~V~~G~dvl~~i~~~~ 148 (164)
T cd01926 83 EKFPD---ENFKLKHTGPGLLSMANAGP---NTNGSQFFITTVK--------TPWLDGKHVVFGKVVEGMDVVKKIENVG 148 (164)
T ss_pred CccCC---CCccccCCCccEEEeeECCC---CCcccEEEEEeCC--------CCccCCcccEEEEEEEcHHHHHHHHcCC
Confidence 77765 55677888999999999875 6899999999987 8899999999999999999999998733
Q ss_pred -----ceEEEEEEeC
Q 012579 441 -----VIQSAKLIEG 450 (460)
Q Consensus 441 -----~I~sakVv~g 450 (460)
.+..|+|+++
T Consensus 149 ~~~~~P~~~i~I~~c 163 (164)
T cd01926 149 SGNGKPKKKVVIADC 163 (164)
T ss_pred CCCCCCcCCeEEEEC
Confidence 2566676654
No 19
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3.1e-32 Score=256.65 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=116.4
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHHhcC-----C---cCCceeeEeeCCcEEecCCCC-CCCCCCCccccCCCCCCCccC
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLVIDG-----A---YDGTRLNCTNQAVLTEKGLDK-GSDYNLPLEIMPSGQFEPLYR 360 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~G-----f---YDGt~FhRvv~~fviQgGd~~-~~G~~iPlEi~~~G~~~Piyg 360 (460)
..|+|+|+||.+.||+||+||++||+.+ + |+++.||||+++|++||||+. ++|.. +.++|+
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g----------~~~~~g 100 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTG----------CVSIYG 100 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCC----------cccccC
Confidence 4688999999999999999999999754 4 999999999999999999963 22221 245777
Q ss_pred ccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEe-ccchHHHHhhcC
Q 012579 361 TALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTT-VGRDILPQIKTG 439 (460)
Q Consensus 361 ~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~Vv-eG~DVL~kI~~G 439 (460)
..|++ |...++|+.+|+||||+.++ |+++|||||++.+ .++|||+|+|||+|+ +|||||++|+..
T Consensus 101 ~~f~~---e~~~~~h~~~G~lsma~~g~---~s~~sqFfIt~~~--------~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~ 166 (186)
T PLN03149 101 SKFED---ENFIAKHTGPGLLSMANSGP---NTNGCQFFITCAK--------CDWLDNKHVVFGRVLGDGLLVVRKIENV 166 (186)
T ss_pred CccCC---cccccccCCCCEEEEeeCCC---CCcccEEEEECCC--------CCccCCCceEEEEEEECcHHHHHHHHcC
Confidence 77764 44567799999999999885 6999999999977 899999999999999 899999999862
Q ss_pred C------ceEEEEEEeCCc
Q 012579 440 D------VIQSAKLIEGQD 452 (460)
Q Consensus 440 D------~I~sakVv~g~e 452 (460)
. .+..|+|.++.+
T Consensus 167 ~~~~~~~P~~~i~I~~cG~ 185 (186)
T PLN03149 167 ATGPNNRPKLACVISECGE 185 (186)
T ss_pred CCCCCCCCcCCeEEEeCEe
Confidence 1 467788887764
No 20
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.3e-32 Score=283.08 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=124.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
.+.|.|+.|| |.|.||++.||+||+||...|++|||||..|||++++||||+|||.|.|.+
T Consensus 406 ~aiihtt~gd-----------------i~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtg-- 466 (558)
T KOG0882|consen 406 AAIIHTTQGD-----------------IHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTG-- 466 (558)
T ss_pred ceEEEecccc-----------------eEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCC--
Confidence 3679999999 999999999999999999999999999999999999999999999987753
Q ss_pred ccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEE
Q 012579 347 LEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYT 426 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~V 426 (460)
++++||..||| +..|.|.|+++-+|||||.|+ |+||||||||..+ +|||||+|||||+|
T Consensus 467 --------gesiwg~dfed--efh~~lrhdrpft~smanag~---ntngsqffit~~~--------tpwld~khtvfgrv 525 (558)
T KOG0882|consen 467 --------GESIWGKDFED--EFHPNLRHDRPFTVSMANAGP---NTNGSQFFITTVP--------TPWLDGKHTVFGRV 525 (558)
T ss_pred --------Ccccccccchh--hcCcccccCCCceEEecccCC---CCCCceEEEEecC--------ccccCCcceeEEEE
Confidence 58999999996 578999999999999999996 7999999999987 99999999999999
Q ss_pred eccchHHHHhhcC
Q 012579 427 TVGRDILPQIKTG 439 (460)
Q Consensus 427 veG~DVL~kI~~G 439 (460)
+.||||++.|+++
T Consensus 526 ~~gm~vvqri~~v 538 (558)
T KOG0882|consen 526 TAGMDVVQRIEQV 538 (558)
T ss_pred ecchhHHhHhhhc
Confidence 9999999999985
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-32 Score=239.54 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=128.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
.|.+.|+.|| |.||||.+.+|+||+||+.||-..||||+.|||-+++|++|+|+++.+|++
T Consensus 2 svtlht~~gd-----------------ikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrg-- 62 (161)
T KOG0884|consen 2 SVTLHTDVGD-----------------IKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRG-- 62 (161)
T ss_pred eEEEeeccCc-----------------EEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCC--
Confidence 4889999998 999999999999999999999999999999999999999999999877753
Q ss_pred ccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEE
Q 012579 347 LEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYT 426 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~V 426 (460)
++++||.+|+| +....|+|+.+|.|+||+.++ |+|+|||||+++. .++||-+|+|||+|
T Consensus 63 --------g~siwg~~fed--e~~~~lkh~~rg~vsmanngp---~tn~sqffity~k--------q~hldmkytvfgkv 121 (161)
T KOG0884|consen 63 --------GNSIWGKKFED--EYSEYLKHNVRGVVSMANNGP---NTNGSQFFITYGK--------QPHLDMKYTVFGKV 121 (161)
T ss_pred --------CccccCCcchH--HHHHHHhhccceeEEcccCCC---CCCCceEEEEecC--------CCccceeEeeeeee
Confidence 57899999997 334567899999999999997 7999999999988 99999999999999
Q ss_pred eccchHHHHhhcC-----------C-ceEEEEEEe
Q 012579 427 TVGRDILPQIKTG-----------D-VIQSAKLIE 449 (460)
Q Consensus 427 veG~DVL~kI~~G-----------D-~I~sakVv~ 449 (460)
++|+|.|++|+.- | .|+.++|..
T Consensus 122 idg~etldele~l~v~~ktyrpl~~~~ik~itiha 156 (161)
T KOG0884|consen 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_pred ccchhhHHHHhhcccCccccccchheeeeeeEEec
Confidence 9999999999872 3 477777753
No 22
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-32 Score=242.09 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=113.4
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHHhcCC--------cCCceeeEeeCCcEEecCCCC-CCCCCCCccccCCCCCCCccC
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLVIDGA--------YDGTRLNCTNQAVLTEKGLDK-GSDYNLPLEIMPSGQFEPLYR 360 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~Gf--------YDGt~FhRvv~~fviQgGd~~-~~G~~iPlEi~~~G~~~Piyg 360 (460)
..|+|.|+||.+.+|+|++||.+.|...| |+++.||||+++|||||||-- ++|.. -.++|+
T Consensus 23 ~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG----------~~sIy~ 92 (177)
T KOG0879|consen 23 PIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG----------VASIYG 92 (177)
T ss_pred EcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce----------EEEEcC
Confidence 57999999999999999999999997654 999999999999999999853 23322 247999
Q ss_pred ccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhc
Q 012579 361 TALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKT 438 (460)
Q Consensus 361 ~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~ 438 (460)
.+|.| |+..|+|..+|+|||||+++ ++||+|||||... .+||||+|+|||+|++|+.++++|+.
T Consensus 93 ~~F~D---ENFtlkH~~PGlLSMANsG~---~tNGCQFFITcak--------cdfLD~KHVVFGrvldGlli~rkIEn 156 (177)
T KOG0879|consen 93 STFPD---ENFTLKHDGPGLLSMANSGK---DTNGCQFFITCAK--------CDFLDGKHVVFGRVLDGLLIMRKIEN 156 (177)
T ss_pred CCCCC---cceeeecCCCceeeccccCC---CCCCceEEEEecc--------cccccCceEEEeeeehhhhhhhhhhc
Confidence 99998 99999999999999999997 6999999999988 99999999999999999999999997
No 23
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-31 Score=251.46 Aligned_cols=139 Identities=22% Similarity=0.323 Sum_probs=124.4
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHH--hcCC-cCCceeeEeeCCcEEecCCCCC-CCCCCCccccCCCCCCCccCccccc
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLV--IDGA-YDGTRLNCTNQAVLTEKGLDKG-SDYNLPLEIMPSGQFEPLYRTALNV 365 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv--~~Gf-YDGt~FhRvv~~fviQgGd~~~-~G~~iPlEi~~~G~~~Piyg~~~ed 365 (460)
..|+|++.|+.++.|.|++||..|| ++|| |.|+.|||++|.||+||||.++ .|. .+.++||.+|+|
T Consensus 149 ~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngt----------ggksiygkkfdd 218 (298)
T KOG0111|consen 149 RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGT----------GGKSIYGKKFDD 218 (298)
T ss_pred ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCC----------CCcccccccccc
Confidence 4699999999999999999999999 5788 9999999999999999999763 222 146899999998
Q ss_pred cCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhc-----CC
Q 012579 366 QDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKT-----GD 440 (460)
Q Consensus 366 ~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~-----GD 440 (460)
|++.|.|+.+|+|||||++. |+||||||||+.. +.||||+|+|||.|++||+||+++++ |-
T Consensus 219 ---enf~lkht~pgtlsmansga---ntngsqffict~k--------tdwldgkhvvfghv~eg~~vvrq~e~qgsksgk 284 (298)
T KOG0111|consen 219 ---ENFTLKHTMPGTLSMANSGA---NTNGSQFFICTEK--------TDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGK 284 (298)
T ss_pred ---cceeeecCCCceeeccccCC---CCCCceEEEEecc--------cccccCceeEEeeecchHHHHHHHHhccCCCCC
Confidence 99999999999999999997 7999999999987 89999999999999999999999987 33
Q ss_pred ceEEEEEEeCCc
Q 012579 441 VIQSAKLIEGQD 452 (460)
Q Consensus 441 ~I~sakVv~g~e 452 (460)
.-..|+|+++.|
T Consensus 285 p~qkv~i~~cge 296 (298)
T KOG0111|consen 285 PQQKVKIVECGE 296 (298)
T ss_pred cceEEEEEeccc
Confidence 467788888775
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.97 E-value=4.7e-30 Score=229.84 Aligned_cols=123 Identities=25% Similarity=0.321 Sum_probs=103.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCc
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVL 373 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~L 373 (460)
|+|+||.+.||+||+||++||+.+||||+.|||++++|++|+|++.+.+... ..++.++++ +..+..
T Consensus 9 i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-----------~~~~~~~~~--E~~~~~ 75 (146)
T cd00317 9 IVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-----------SGPGYKFPD--ENFPLK 75 (146)
T ss_pred EEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-----------CcCCCccCC--ccccCc
Confidence 9999999999999999999999999999999999999999999986433210 123333443 233344
Q ss_pred cCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCC
Q 012579 374 PLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGD 440 (460)
Q Consensus 374 p~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD 440 (460)
.|+.+|+|+|++.++ ++++|||||++.+ .++|||+|+|||+|++|||+|++|..+.
T Consensus 76 ~~~~~G~v~~~~~~~---~~~~sqF~Itl~~--------~~~ld~~~~vfG~V~~G~~vl~~I~~~~ 131 (146)
T cd00317 76 YHHRRGTLSMANAGP---NTNGSQFFITTAP--------TPHLDGKHTVFGKVVEGMDVVDKIERGD 131 (146)
T ss_pred CcCCCcEEEEeeCCC---CCcccEEEEECCC--------CcccCCCceEEEEEeCCHHHHHHHHcCC
Confidence 489999999999875 5899999999987 8899999999999999999999999854
No 25
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=262.20 Aligned_cols=152 Identities=27% Similarity=0.348 Sum_probs=132.0
Q ss_pred cccCCCcCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEec
Q 012579 256 YKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEK 335 (460)
Q Consensus 256 y~~lP~L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQg 335 (460)
|..-|..+|. |.+.|++|| |.|+|.+..||.+|.||++||-.|||+|+.|||++++|++||
T Consensus 5 ~~~EP~ttgk--vil~TT~G~-----------------I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qg 65 (439)
T KOG0885|consen 5 YNLEPPTTGK--VILKTTKGD-----------------IDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQG 65 (439)
T ss_pred cccCCCccce--EEEEeccCc-----------------eeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhccc
Confidence 4455666665 899999999 999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCC
Q 012579 336 GLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSF 415 (460)
Q Consensus 336 Gd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~ 415 (460)
||++++|.+ +++|||.+|.+ +..+.|.|+++|+|+|||.+. +.|||||||||++ +++
T Consensus 66 gdp~~~gtG----------gesiyg~~fad--E~h~Rlrf~rrGlvgmana~~---~~ngsqFfftl~~--------~~e 122 (439)
T KOG0885|consen 66 GDPTGTGTG----------GESIYGRPFAD--EFHPRLRFNRRGLVGMANAGN---DDNGSQFFFTLGD--------TPE 122 (439)
T ss_pred CCCCCCCCC----------ccccccccchh--hcCcceeeeccceeeecccCC---CCCCceEEEEecC--------ChH
Confidence 999987753 57899999986 578999999999999999987 5789999999998 999
Q ss_pred CCCCccEEEEEec-cchHHHHhhcCC-----------ceEEEEEEe
Q 012579 416 DEGQFSVFGYTTV-GRDILPQIKTGD-----------VIQSAKLIE 449 (460)
Q Consensus 416 LDG~ytVFG~Vve-G~DVL~kI~~GD-----------~I~sakVv~ 449 (460)
|+++|++||+|+. -.=.+.+|..|+ +|.+++|+.
T Consensus 123 l~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~ 168 (439)
T KOG0885|consen 123 LNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLI 168 (439)
T ss_pred hcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeec
Confidence 9999999999994 333455555543 788888864
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.96 E-value=2.5e-29 Score=226.92 Aligned_cols=130 Identities=28% Similarity=0.342 Sum_probs=102.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCC
Q 012579 292 ATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELP 371 (460)
Q Consensus 292 G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p 371 (460)
|+|+|+||++.||+||+||++||+.|+|+|+.|||+++++++|+|++.+.+.... ....++.++++ +..+
T Consensus 10 G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~--------~~~~~~~~~~~--E~~~ 79 (155)
T PF00160_consen 10 GRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGR--------EDSTGGEPIPD--EFNP 79 (155)
T ss_dssp EEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTS--------EEBTTBSCBSS--SGBT
T ss_pred cCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCccc--------ccccCcccccc--cccc
Confidence 3499999999999999999999999999999999999999999999764332100 00111212322 1222
Q ss_pred CccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCC
Q 012579 372 VLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGD 440 (460)
Q Consensus 372 ~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD 440 (460)
...+|.+|+|+|++.+.. +++++|||||++.+ .+++|++|+|||+|++|||||++|+.++
T Consensus 80 ~~~~~~~G~v~~~~~~~~-~~~~~sqF~I~l~~--------~~~ld~~~~vfG~V~~G~~vl~~i~~~~ 139 (155)
T PF00160_consen 80 SLLKHRRGLVSMARSGKD-PNSNGSQFFITLSD--------APHLDGKYTVFGRVIEGMDVLDKIEAGP 139 (155)
T ss_dssp TSSSSSTTEEEEEBSSSS-TTEBSSEEEEESSC--------GGGGTTTSEEEEEEEEHHHHHHHHHTSB
T ss_pred ccccccceeeeecccccC-CCCCCceEEeeccC--------CCccccceeeeeEEehhHHHHHHHHCCC
Confidence 334569999999998632 26889999999988 7799999999999999999999999974
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-28 Score=243.86 Aligned_cols=135 Identities=26% Similarity=0.301 Sum_probs=121.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
.|.|+|+.|| |+|.||-..+|.||-||++||+..||+++.||-|..+|++|+|||+|+|.+
T Consensus 2 sVlieTtlGD-----------------lvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~G-- 62 (479)
T KOG0415|consen 2 SVLIETTLGD-----------------LVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDG-- 62 (479)
T ss_pred cEEEEeeccc-----------------EEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCC--
Confidence 4889999999 999999999999999999999999999999999999999999999988754
Q ss_pred ccccCCCCCCCccCcccccc-----CCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCcc
Q 012579 347 LEIMPSGQFEPLYRTALNVQ-----DGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFS 421 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~-----~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~yt 421 (460)
++++|+.-..++ .+..|.+.|+..|+|||++.+. |-+||||||||+++ +..|||+|+
T Consensus 63 --------G~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~---n~~gSQF~iTlgen-------LdyLDg~ht 124 (479)
T KOG0415|consen 63 --------GESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGE---NLNGSQFFITLGEN-------LDYLDGKHT 124 (479)
T ss_pred --------cceeeeecccccchhhhhhhcccccccccceEEeecCCc---ccccceEEEEcccc-------ccccccccc
Confidence 356666544332 2467899999999999999997 68999999999984 889999999
Q ss_pred EEEEEeccchHHHHhhc
Q 012579 422 VFGYTTVGRDILPQIKT 438 (460)
Q Consensus 422 VFG~VveG~DVL~kI~~ 438 (460)
|||+|+||+|+|.+|..
T Consensus 125 vfGqV~EG~dtl~kiNe 141 (479)
T KOG0415|consen 125 VFGQVAEGFDTLTKINE 141 (479)
T ss_pred eeeehhhhHHHHHHHHH
Confidence 99999999999999987
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.8e-24 Score=196.81 Aligned_cols=133 Identities=23% Similarity=0.297 Sum_probs=114.2
Q ss_pred CCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh--cCC-cCCceeeE---eeCCcEEecCCCCC-CCCCCCccccCC
Q 012579 280 FSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI--DGA-YDGTRLNC---TNQAVLTEKGLDKG-SDYNLPLEIMPS 352 (460)
Q Consensus 280 f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YDGt~FhR---vv~~fviQgGd~~~-~G~~iPlEi~~~ 352 (460)
||+.++++| .|++.++|+.+..|+|++||..||. +|| |.+..||| .+++||+||||-+. .|.
T Consensus 8 ~d~~~~~~p--~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngt--------- 76 (167)
T KOG0865|consen 8 FDIAIDGEP--LGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGT--------- 76 (167)
T ss_pred eeeeecCcc--ccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCc---------
Confidence 455666665 6889999999999999999999984 555 99999999 34579999998642 121
Q ss_pred CCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchH
Q 012579 353 GQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDI 432 (460)
Q Consensus 353 G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DV 432 (460)
.+.++|++.|+| |+..|+|..+|.|+|||.++ |+++||||||+.. +.||||+|+|||+|.+||++
T Consensus 77 -ggkSiy~ekF~D---enFilkhtgpGiLSmaNagp---ntngsqffictak--------tewLdgkhVVfGkv~eGm~i 141 (167)
T KOG0865|consen 77 -GGKSIYGEKFDD---ENFILKHTGPGILSMANAGP---NTNGSQFFICTAK--------TEWLDGKHVVFGKVKEGMDI 141 (167)
T ss_pred -cceEecccccCC---cCcEEecCCCCeeehhhcCC---CccccEEEEEccc--------cccccCceeEcCceEcccch
Confidence 246789999977 89999999999999999997 7999999999987 78999999999999999999
Q ss_pred HHHhhc
Q 012579 433 LPQIKT 438 (460)
Q Consensus 433 L~kI~~ 438 (460)
+++++.
T Consensus 142 v~a~e~ 147 (167)
T KOG0865|consen 142 VEAMER 147 (167)
T ss_pred hhhhhc
Confidence 999987
No 29
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=96.88 E-value=0.0075 Score=55.60 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=82.5
Q ss_pred hhHHHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhh
Q 012579 140 ANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIK 219 (460)
Q Consensus 140 ~~ir~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~ 219 (460)
++|.+.+++|.++...+-. |.|..+...++.-..-|..+=..|..++|++.|+++.+|..+| .+.|..|-.+++
T Consensus 43 ~~i~~~~~r~~eLk~lI~k---k~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~L---f~~L~~LD~AA~ 116 (142)
T TIGR03042 43 EGIEAAKDRLPELASLVAK---EDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKEL---KDDLEKLDEAAR 116 (142)
T ss_pred HHHHHHHHhhHHHHHHHhh---cchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4566677778788887766 9999999999998888988889999999999999999999999 999999999999
Q ss_pred hcCCcchhhhHHhhHHHHHHH
Q 012579 220 DQDPDKVSVGLASSLDTVAEL 240 (460)
Q Consensus 220 ~kd~d~~~~~~~~~L~~v~~l 240 (460)
.||..++....+++.......
T Consensus 117 ~kd~~~a~k~Y~~av~~~daf 137 (142)
T TIGR03042 117 LQDGPQAQKAYQKAAADFDAY 137 (142)
T ss_pred hcCHHHHHHHHHHHHHHHHHH
Confidence 999999888888876655543
No 30
>PRK00969 hypothetical protein; Provisional
Probab=95.81 E-value=0.034 Score=60.29 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=69.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCc
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVL 373 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~L 373 (460)
+.++++. .||..++.|+.+.+.|.+. ..+....|+..+- -.|..+|. |+..
T Consensus 206 ~eve~~~-~~p~s~EH~la~~~~G~f~---Vd~~tstfI~d~~---L~g~~~p~---------------------En~~- 256 (508)
T PRK00969 206 VEVELDP-GAPKSVEHFLALLEDGTFE---VDFETSTFIADDR---LQGLKIPE---------------------ENFE- 256 (508)
T ss_pred EEEEEcC-CCCchHHHHHHHHhCCeEE---EeeeecceEeecc---ccCccCCc---------------------cccC-
Confidence 6777775 6999999999999998742 2333334442211 01222221 2222
Q ss_pred cCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCCce
Q 012579 374 PLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVI 442 (460)
Q Consensus 374 p~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD~I 442 (460)
--.+|+|.+-+.|. +.-..||+-.+.. +.+ .|+|+|+|+.|||+++--++||+|
T Consensus 257 -~R~~GtVTVRt~G~-----g~G~vYIyredr~-------ss~--sHtvVG~V~~GiELi~~a~~Gd~i 310 (508)
T PRK00969 257 -PRRRGTVTVRTAGV-----GVGKVYIYREDRP-------SSL--SHTVVGRVTHGIELIDFAKEGDRI 310 (508)
T ss_pred -ccccceEEEEeecc-----CceeEEEECCCCC-------CCc--cceeEEEEecceeeeecccCCCEE
Confidence 13599999988875 2346799877632 112 799999999999999999999865
No 31
>PLN02956 PSII-Q subunit
Probab=95.70 E-value=0.079 Score=50.77 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=77.6
Q ss_pred HHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcC
Q 012579 143 KAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQD 222 (460)
Q Consensus 143 r~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd 222 (460)
|+--..|=.+...+-. |.|--+...++.-+.-|..+=..|..++|++.|+.+.+|..+| .+.+..|-+++..||
T Consensus 90 k~~A~~l~~LK~LI~k---~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~L---Fd~l~~LD~AAR~kd 163 (185)
T PLN02956 90 RGHAENLLRVKALIES---ESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDL---FNSVTKLDYAARDKD 163 (185)
T ss_pred HHHHHHHHHHHHHhhh---ccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHH---HHHHHHHHHHHhcCC
Confidence 3333335555665655 8999999999988888988999999999999999999999999 999999999999999
Q ss_pred CcchhhhHHhhHHHHHHH
Q 012579 223 PDKVSVGLASSLDTVAEL 240 (460)
Q Consensus 223 ~d~~~~~~~~~L~~v~~l 240 (460)
..+.....++++..+.++
T Consensus 164 ~~~a~k~Y~~tva~lD~V 181 (185)
T PLN02956 164 ETRVWEYYENIVASLDDI 181 (185)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988887776655
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.44 E-value=0.14 Score=55.63 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=66.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHhcCCc--CCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCC
Q 012579 293 TIQVVLDGYSAPLTAGNVAKLVIDGAY--DGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGEL 370 (460)
Q Consensus 293 ~I~IeLd~~~AP~Ta~NFl~Lv~~GfY--DGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~ 370 (460)
-|.|+||.+.||.|+.-|.++.--... =-+++|=..++.++=-|+.. .+..+..| ..
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~~-~~k~LiPE--------------------N~ 434 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNKE-LAKGLIPE--------------------NT 434 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCch-hccccCCC--------------------CC
Confidence 499999999999999999998632211 11233333344322122221 11111111 11
Q ss_pred CCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCCce
Q 012579 371 PVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVI 442 (460)
Q Consensus 371 p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD~I 442 (460)
|.- .-..|.|+|-|..... . -=.=|=+.+++.-||.|-++ +|.. +.|+|++++|.|+++++||.|
T Consensus 435 P~~-~V~ag~IgvTN~a~k~--~--G~IGVRl~d~defGPTGE~F-~gTN-IiG~Vv~~~e~Lk~~KeGd~V 499 (503)
T TIGR03268 435 PED-KVEAGVIGVTNQACKH--V--GMIGVRLEDSDEFGPTGEPF-SGTN-IIGRVVEGMERLKGLKEGDTV 499 (503)
T ss_pred CCC-ccccceEeeechhhhc--C--ceEEEEccCCcccCCCCCCc-cCcc-eEEEecCChhHhcccccCceE
Confidence 111 1236777776654311 1 11223344544445555443 4444 559999999999999999975
No 33
>PRK00969 hypothetical protein; Provisional
Probab=95.38 E-value=0.2 Score=54.57 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=74.5
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
...++|++|+ |+|+|- .+...+.-|..-++. |.|...|=...+-+ -.|... ..
T Consensus 52 ~y~IkTtkG~-----------------i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~v-AfGp~~-----s~ 104 (508)
T PRK00969 52 KYRIKTTKGE-----------------IVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSAV-AFGPFE-----SD 104 (508)
T ss_pred eEEEEccCce-----------------EEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccce-eEcccc-----cC
Confidence 4678888887 999999 455566666665554 66666654433332 233221 11
Q ss_pred ccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEE
Q 012579 347 LEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYT 426 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~V 426 (460)
++ +.. .+. ...++-|.+.-++-+ ...+.+-|...+ -+.-=|++. | -+||+|
T Consensus 105 l~--p~~----------------~~~--~y~r~DV~lg~~G~d---p~~thLIfsk~~--h~a~YG~p~-~---gv~grV 155 (508)
T PRK00969 105 LE--PSR----------------EEY--EYERWDVVLSLSGFD---PSETHLIFSKRD--HSADYGAPN-D---GVIGRV 155 (508)
T ss_pred cc--ccc----------------Ccc--eeecccEEEEccCCC---CCCceEEEEecc--hhhhhCCCC-C---CceEEE
Confidence 11 100 000 134777888888752 234444444433 121223332 2 699999
Q ss_pred eccchHHHHhhcCCceEEEEEE
Q 012579 427 TVGRDILPQIKTGDVIQSAKLI 448 (460)
Q Consensus 427 veG~DVL~kI~~GD~I~sakVv 448 (460)
|.|..+|++|..||.|.++.=|
T Consensus 156 i~Gk~vl~~L~~~D~I~sIEPV 177 (508)
T PRK00969 156 VGGKRVLDRLTDGDRIISIEPV 177 (508)
T ss_pred ccchhhHhhccCCCeEEEEeee
Confidence 9999999999999999998543
No 34
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=95.03 E-value=0.013 Score=56.96 Aligned_cols=124 Identities=17% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCCcccccccCCCCCCCCChhhH---hhh--cCCC---C---hhHHHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHH
Q 012579 109 SVFPANAVLYSPDTKVPRTGELA---LRR--AIPA---N---ANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKI 177 (460)
Q Consensus 109 ~~~~~~a~l~~p~~~~~~~~~a~---LR~--alP~---n---~~ir~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~ 177 (460)
.++|...-+ |.++.....+.. |+. -+|. . .-|++-...|.++.+.+-. |.|.-+..+++.-..-
T Consensus 63 ~~~p~~~~~--~g~~~~~~aRd~~l~lk~rf~~~~l~~~ea~~Rik~sa~~L~~lk~lIdk---~sW~~v~~~LRlka~~ 137 (202)
T PF05757_consen 63 LPPPPSGNL--PGTNNSDGARDFDLPLKERFYIQPLSPEEAAARIKESAKRLLSLKELIDK---KSWPYVRNYLRLKAGY 137 (202)
T ss_dssp ---------------------------TT--EE----CCCHHHHHHHHHHHHCCCHHHHHT---T-HHHHHHHHHCCCCC
T ss_pred CCCCCCCCC--CCccccccccccccchhhceecCCCCHHHHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHhH
Confidence 333443333 555555555555 443 3441 2 4456666668778888766 8999998888877777
Q ss_pred HhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhHHhhHHHHHHH
Q 012579 178 AMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAEL 240 (460)
Q Consensus 178 l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~~~L~~v~~l 240 (460)
|..+=..|+.+.|+++|+....|.++| -..++.|..++..||..++...+++++..+.++
T Consensus 138 Lr~DL~~liss~p~~~kk~l~~La~~l---f~~ie~LD~Aar~K~~~~a~~~Y~~t~~~Ldev 197 (202)
T PF05757_consen 138 LRYDLNTLISSKPKDEKKALTDLANKL---FDNIEELDYAARSKDVPEAEKYYADTVKALDEV 197 (202)
T ss_dssp HHHHHHHHHCCS-HHHHHHHHHHHHHH---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999 888888888999999999999998887776655
No 35
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.86 E-value=0.42 Score=51.96 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=75.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
...++|++|+ |+|+|-. ...++.-|.+-++. |-|...|=....-+ -.|... +.
T Consensus 48 ~y~IkTtkG~-----------------i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~v-AfGp~~-----sd 100 (503)
T TIGR03268 48 EYLIKTTKGE-----------------VVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQEV-AFGPFP-----SD 100 (503)
T ss_pred eEEEEccCce-----------------EEEEecC--CchHHHHHHHHHHh--hcCCceeecchhhe-eeCccc-----CC
Confidence 4678888887 9999984 55677777766654 56665553333322 222211 11
Q ss_pred ccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEE
Q 012579 347 LEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYT 426 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~V 426 (460)
++ +.. .+. ...++-|.+.-++-+ ...+.+.|...+-. ..=|+|- .--+||+|
T Consensus 101 l~--p~~----------------~~~--~y~r~DV~lg~~G~d---~~~thLIfsk~~h~--~~YG~p~---~~gvigrv 152 (503)
T TIGR03268 101 LE--PSR----------------EPS--EYERWDVILSLSGFD---PDETHIIFSKKRHA--AEYGVPD---ENGIIARV 152 (503)
T ss_pred cc--ccC----------------Ccc--eeecccEEEEccCCC---CCCceEEEEecchh--hhhCCCC---CCCEEEEE
Confidence 11 100 000 134778888888752 33555555554411 0112222 33699999
Q ss_pred eccchHHHHhhcCCceEEEEEE
Q 012579 427 TVGRDILPQIKTGDVIQSAKLI 448 (460)
Q Consensus 427 veG~DVL~kI~~GD~I~sakVv 448 (460)
|.|..+|++|..||.|.|+.=|
T Consensus 153 i~Gk~vl~~L~~~D~I~sIEPv 174 (503)
T TIGR03268 153 VGGKRVIDRLSDGDQIISIEPV 174 (503)
T ss_pred ccchhhHhhccCCCeEEEEeee
Confidence 9999999999999999998543
No 36
>PLN02729 PSII-Q subunit
Probab=94.05 E-value=0.83 Score=44.78 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=94.5
Q ss_pred CCCCCcccccccCCCCCCCCChhhHhhhcC--CC---ChhHHHHHHh---HhhhhhccCCCCCCCCcchhhhHHHHHHHH
Q 012579 107 FWSVFPANAVLYSPDTKVPRTGELALRRAI--PA---NANMKAIQAS---LEDISFLLRIPQRKPYGTMEGNVKKALKIA 178 (460)
Q Consensus 107 ~~~~~~~~a~l~~p~~~~~~~~~a~LR~al--P~---n~~ir~iQ~~---LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l 178 (460)
-.+|+|..+.++| -.|--...+..||.-+ |+ ...+-.|... |=.+.+.+.. |.|.-+-.+++....-|
T Consensus 81 ~~~P~P~pst~n~-~~~e~~gtRsfLKerfy~~~l~p~~aa~RiK~sA~dLl~vKdLId~---~sW~yVq~~LRLKAsyL 156 (220)
T PLN02729 81 LDGPLPVPSVDNK-IVNEKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGP---DTLNYVRKYLRLKSTFM 156 (220)
T ss_pred eCCCCCCCccccc-cccccchHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhCc---chHHHHHHHHHHHHHHH
Confidence 3345455457765 2223344566687653 21 2333333333 4456777754 99999999999999999
Q ss_pred hhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhHHhhHHHHHHH
Q 012579 179 MDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAEL 240 (460)
Q Consensus 179 ~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~~~L~~v~~l 240 (460)
..+=..|+.+.|+++|+.-..|.++| -..+..|..++..|+..++..-.+.++..+.++
T Consensus 157 ~yDL~tvIsskP~~eKk~L~~LankL---Fdn~~eLD~AaR~Ks~~eae~yY~~Tv~aLdeV 215 (220)
T PLN02729 157 YYDFDKLISAAPVDDKQPLTDLANRL---FDNFEKLEDASKRKNLSETESSYKDTKTLLQEV 215 (220)
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHH---HhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 778888888999999999999998888877766
No 37
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=93.67 E-value=0.35 Score=46.34 Aligned_cols=93 Identities=9% Similarity=0.099 Sum_probs=81.0
Q ss_pred HHHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhc
Q 012579 142 MKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQ 221 (460)
Q Consensus 142 ir~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~k 221 (460)
||+--..|=.+.+.|.. |.|.-+-.+++..+.-|..+=..|+.+.|+++|+...+|.++| -..+..|..++..|
T Consensus 93 iK~sA~dLl~vK~LId~---~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~LankL---Fdnvt~LDyAAR~K 166 (190)
T PLN02999 93 IKQTAEGLRDMREMLDH---MSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANEL---VENMSELDYYVRTP 166 (190)
T ss_pred HHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHHHHH---hhhHHHHHHHHhcC
Confidence 44444456667888876 9999999999999999999999999999999999999999999 77888888889999
Q ss_pred CCcchhhhHHhhHHHHHHH
Q 012579 222 DPDKVSVGLASSLDTVAEL 240 (460)
Q Consensus 222 d~d~~~~~~~~~L~~v~~l 240 (460)
|..++..-.+.++..+.++
T Consensus 167 ~~~eae~yY~~Tv~slddV 185 (190)
T PLN02999 167 KVYESYLYYEKTLKSIDNV 185 (190)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 9999999999888887776
No 38
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.24 Score=52.59 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=66.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCc
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVL 373 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~L 373 (460)
+.++|.+ ++|+.|+.|+.|.+.|-+. +.--...|+..+ .-.+..+ ..++..+
T Consensus 205 ~eve~s~-nsP~saEH~lalmedG~lr---i~~~tntfis~~---~lq~~~~---------------------~~en~d~ 256 (512)
T COG4070 205 FEVELSR-NSPKSAEHFLALMEDGTLR---IDVTTNTFISDD---TLQEEKV---------------------PEENFDL 256 (512)
T ss_pred EEEEeCC-CCchhHHHHHHHhhcceEE---EEEeccceeecc---ccccccC---------------------Chhhhhh
Confidence 7888886 6999999999999987421 110112232111 0001111 1133332
Q ss_pred cCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCCce
Q 012579 374 PLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVI 442 (460)
Q Consensus 374 p~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD~I 442 (460)
..+|.+..-|.+- +....||+-.+.. +.+ .|.|.|+|++|||+++--..||++
T Consensus 257 --RerG~iTvRn~Gv-----geGrvYIyRedR~-------ss~--sHnvVGrV~eGiELid~a~eGd~l 309 (512)
T COG4070 257 --RERGAITVRNVGV-----GEGRVYIYREDRP-------SSL--SHNVVGRVIEGIELIDLAEEGDKL 309 (512)
T ss_pred --hhcceEEEEeeec-----ccceEEEEecCCC-------Ccc--ccceeeeeecceEEEEecccCcEE
Confidence 4699999988775 2346788876622 222 689999999999999999999964
No 39
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.11 Score=55.71 Aligned_cols=143 Identities=14% Similarity=0.078 Sum_probs=91.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCC-CC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDY-NL 345 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~-~i 345 (460)
.+++.+.+|| +...|.|+++..-.|.-++-|.++|+.+|+++..|.||...++.|.||..-.+. +.
T Consensus 100 ~a~wv~skGd-------------~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 100 FAEWVTSKGD-------------KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred ceEEecCCCC-------------eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 4788899987 456699999999999999999999999999999999999999999998642211 00
Q ss_pred CccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEE
Q 012579 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGY 425 (460)
Q Consensus 346 PlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~ 425 (460)
=.|.... ++-|- +.+ ...+..++ +..-++....... +-.+-+|++.-.. .+-+...-.|||+
T Consensus 167 mVEyWs~---e~~~q--fPr-~~l~~~~K-~eTdLy~f~K~Kt---~pts~Efsp~g~q--------istl~~DrkVR~F 228 (558)
T KOG0882|consen 167 MVEYWSA---EGPFQ--FPR-TNLNFELK-HETDLYGFPKAKT---EPTSFEFSPDGAQ--------ISTLNPDRKVRGF 228 (558)
T ss_pred eeEeecC---CCccc--Ccc-cccccccc-ccchhhccccccc---CccceEEccccCc--------ccccCcccEEEEE
Confidence 0121110 00011 111 01122222 2233333333322 1124455555433 4445567899999
Q ss_pred EeccchHHHHhhcCC
Q 012579 426 TTVGRDILPQIKTGD 440 (460)
Q Consensus 426 VveG~DVL~kI~~GD 440 (460)
+..|.++++.|.+.+
T Consensus 229 ~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVL 243 (558)
T ss_pred Eeccchhhhhhhccc
Confidence 999999999998754
No 40
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.63 Score=49.50 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=20.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHh
Q 012579 294 IQVVLDGYSAPLTAGNVAKLVI 315 (460)
Q Consensus 294 I~IeLd~~~AP~Ta~NFl~Lv~ 315 (460)
|.|+||.+.||.++.-|.++..
T Consensus 378 ieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 378 IEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEecCCCCchhhHHHHhhcc
Confidence 9999999999999999998863
No 41
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=84.72 E-value=3.9 Score=38.16 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=18.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q 012579 293 TIQVVLDGYSAPLTAGNVAKLV 314 (460)
Q Consensus 293 ~I~IeLd~~~AP~Ta~NFl~Lv 314 (460)
.++.+|..+.||+||+.|.++-
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH-
T ss_pred EEEEEEcccCChHHHHHHHHhC
Confidence 4899999999999999999875
No 42
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=64.30 E-value=10 Score=33.76 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=33.4
Q ss_pred cCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCCce
Q 012579 377 VYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVI 442 (460)
Q Consensus 377 ~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD~I 442 (460)
..|.|+....+. -|-|++.+.... -++-+.+-+...++|+|++|.+.|+++..|+.|
T Consensus 61 ~~GDi~Yw~pg~--------~l~ifyg~~p~S-~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~~~V 117 (120)
T PF04126_consen 61 EAGDIAYWPPGG--------ALAIFYGDTPIS-EGGEIRPASPVNVLGRIVSDLENLKEVKGGEKV 117 (120)
T ss_dssp -TTEEEEECCCT--------EEEEESS--TT---TTSB--SSSEEEEEEEEC-GGGGGG--TTEEE
T ss_pred cCceEEEeCCCC--------EEEEEecCcccc-cccccccCCcceEEEEECCCHHHHhhCCCCCeE
Confidence 478888765432 366666663221 122335566789999999999999999988644
No 43
>PRK11820 hypothetical protein; Provisional
Probab=54.54 E-value=37 Score=34.84 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=64.4
Q ss_pred hhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhHH
Q 012579 152 ISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLA 231 (460)
Q Consensus 152 i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~ 231 (460)
+.+.|+.|+. +..-..+.......+..-=+.-|+.+-..++..|+.|...|......++.+.+.|+...++.+...+.
T Consensus 107 l~~ll~~p~v--~~~~~~~~~~~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~ 184 (288)
T PRK11820 107 LDDLLRWPGV--LEAEEEDLEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRE 184 (288)
T ss_pred HHHHhCCCCc--ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4556777776 32222233333344444556667778889999999999999888888888888898999988888888
Q ss_pred hhHHHHHHH
Q 012579 232 SSLDTVAEL 240 (460)
Q Consensus 232 ~~L~~v~~l 240 (460)
...+.+.++
T Consensus 185 rL~~rl~el 193 (288)
T PRK11820 185 RLRERLEEL 193 (288)
T ss_pred HHHHHHHHH
Confidence 888888876
No 44
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=45.44 E-value=37 Score=30.30 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.8
Q ss_pred cEEEEEeccchHHHHhhcCCce
Q 012579 421 SVFGYTTVGRDILPQIKTGDVI 442 (460)
Q Consensus 421 tVFG~VveG~DVL~kI~~GD~I 442 (460)
-|.|++++|+|.|.++..|+.|
T Consensus 100 NvIGrIv~~lE~lk~v~dGe~v 121 (126)
T COG2164 100 NVIGRIVKNLELLKSVDDGERV 121 (126)
T ss_pred HHHHHHHhhHHhhhcccCCceE
Confidence 4789999999999999999964
No 45
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=33.89 E-value=87 Score=32.26 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=45.9
Q ss_pred hhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhHHhhHHHHHHH
Q 012579 183 DSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAEL 240 (460)
Q Consensus 183 ~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~~~L~~v~~l 240 (460)
+.-|..+-..++..|+.|-+.|......++.+.+.|+...++.+...+....+.+.++
T Consensus 138 ~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el 195 (291)
T TIGR00255 138 EEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDL 195 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3445556678889999999999887888888888888888888888888877777766
No 46
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=26.48 E-value=38 Score=36.33 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=57.3
Q ss_pred HhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhh
Q 012579 149 LEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSV 228 (460)
Q Consensus 149 LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~ 228 (460)
|.++.|.||..++|=| +++||..|..+|. .-+.+|+.+.... ...+=..| ..+++.|. ++..-|.+.+..
T Consensus 135 LaEaeyLlrlA~qkL~--l~~Dv~tA~alLk-sAD~rLa~~~dP~---l~~lR~Ai---a~DI~~L~-av~~vD~~Gl~l 204 (390)
T PRK10920 135 LAQADFLVKLAGRKLW--SDQDVTTAAALLK-SADASLADMNDPS---LITVRRAI---TDDIATLS-AVSQVDYDGIIL 204 (390)
T ss_pred HHHHHHHHHHHHHHHH--HcCCHHHHHHHHH-HHHHHHHhcCCcc---hHHHHHHH---HHHHHHHH-cCCCCCHHHHHH
Confidence 3447777788777755 7899999999986 7888888886543 33333334 44555552 456778888877
Q ss_pred hHHhhHHHHHHHHH
Q 012579 229 GLASSLDTVAELEL 242 (460)
Q Consensus 229 ~~~~~L~~v~~lE~ 242 (460)
+...+.+.|.+|-.
T Consensus 205 rL~~L~~qVd~LpL 218 (390)
T PRK10920 205 KLNQLSNQVDNLRL 218 (390)
T ss_pred HHHHHHHHHhhCCC
Confidence 77777776665533
No 47
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=25.88 E-value=2e+02 Score=26.53 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhh--hH-HhhHHHHHHHHHhhcC
Q 012579 170 NVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSV--GL-ASSLDTVAELELLQAP 246 (460)
Q Consensus 170 ~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~--~~-~~~L~~v~~lE~~~~~ 246 (460)
||..+..+|...++.|.+++|=..-....-.+..+ +..|.++.+++.++-+.-+.. .. ..+|+.+-. ---++.
T Consensus 2 ~i~~~~~~L~~~~~~i~~s~Py~~~~~~dyaY~Rv---k~~L~~F~~~L~D~~~~~lPP~~~~~~~sL~fl~~-at~~v~ 77 (143)
T PF08559_consen 2 DIQSALEVLQQKQENIYKSFPYSRSVSSDYAYNRV---KPHLLEFLKALSDFGLNFLPPNEQQWSTSLEFLDE-ATNIVH 77 (143)
T ss_dssp -HHHHHHHHHHHHHHHHHTS-SSS-TTSHHHHHHH---HHHHHHHHHHHHHHGGGGSTTT---HHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCCcchhHHHH---HHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHH-HHHHHH
Confidence 56778888999999999999976554445556666 667777766666665555522 11 233443332 234455
Q ss_pred CCC-CcCc
Q 012579 247 GLS-FLLP 253 (460)
Q Consensus 247 ~~p-~~vP 253 (460)
.+| |+-+
T Consensus 78 ~LP~w~~~ 85 (143)
T PF08559_consen 78 KLPNWDNQ 85 (143)
T ss_dssp TS---SSC
T ss_pred HCCCCCCH
Confidence 565 4443
No 48
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=23.59 E-value=45 Score=35.15 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=52.1
Q ss_pred hhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhH
Q 012579 151 DISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGL 230 (460)
Q Consensus 151 ~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~ 230 (460)
++.|.||..++|=| +++||..|+.+|. .-+.+|+.+.... ...+=..| ..+++.|. ++..-|.+.+..+.
T Consensus 131 EaeyLlrlA~qrL~--l~~Dv~~Al~lL~-~AD~rLa~~~dp~---l~~vR~Al---a~Di~~L~-~~~~~D~~gl~l~L 200 (372)
T PF04375_consen 131 EAEYLLRLANQRLQ--LEGDVQTALALLQ-SADQRLAELDDPS---LLPVRQAL---AQDIAALR-AVPQVDIEGLALRL 200 (372)
T ss_pred HHHHHHHHHHHHHH--HcCCHHHHHHHHH-HHHHHHHhcCCcc---hHHHHHHH---HHHHHHHH-CCCCCCHHHHHHHH
Confidence 46666666666544 8899999999886 7888888885443 33333344 44555553 44566777777776
Q ss_pred HhhHHHHHHH
Q 012579 231 ASSLDTVAEL 240 (460)
Q Consensus 231 ~~~L~~v~~l 240 (460)
....+.|.+|
T Consensus 201 ~aL~~~vd~L 210 (372)
T PF04375_consen 201 DALINQVDEL 210 (372)
T ss_pred HHHHHHHhhC
Confidence 6666666555
No 49
>PRK11677 hypothetical protein; Provisional
Probab=21.16 E-value=1.8e+02 Score=26.75 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=31.0
Q ss_pred HhhhcCCCChhHHHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchh
Q 012579 131 ALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKE 195 (460)
Q Consensus 131 ~LR~alP~n~~ir~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~ 195 (460)
+.|.--|..+..+++|+.||+....|.- ...+|.. =+. +...+|..+..++|.
T Consensus 20 ~~R~~~~~~~~q~~le~eLe~~k~ele~--------YkqeV~~---HFa-~TA~Ll~~L~~~Y~~ 72 (134)
T PRK11677 20 AMRFGNRKLRQQQALQYELEKNKAELEE--------YRQELVS---HFA-RSAELLDTMAKDYRQ 72 (134)
T ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHH--------HHHHHHH---HHH-HHHHHHHHHHHHHHH
Confidence 5565444457889999999998876643 2233321 111 455666666666643
Done!