Query 012579
Match_columns 460
No_of_seqs 263 out of 1519
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 12:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfy_A Peptidyl-prolyl CIS-tra 100.0 4.6E-91 1.6E-95 711.8 24.4 333 109-458 18-364 (369)
2 2fu0_A Cyclophilin, putative; 100.0 4.1E-39 1.4E-43 295.5 16.4 143 266-448 6-159 (160)
3 2ok3_A Peptidyl-prolyl CIS-tra 100.0 7.9E-39 2.7E-43 293.6 17.1 143 267-449 2-156 (161)
4 2x7k_A Peptidyl-prolyl CIS-tra 100.0 7.9E-39 2.7E-43 295.2 16.1 136 264-439 10-145 (166)
5 2b71_A Cyclophilin-like protei 100.0 4E-39 1.4E-43 304.6 12.3 147 263-449 36-193 (196)
6 3bo7_A Peptidyl-prolyl CIS-tra 100.0 2.7E-38 9.2E-43 299.7 17.0 149 262-450 3-174 (201)
7 2poe_A Cyclophilin-like protei 100.0 2.1E-38 7.1E-43 297.2 16.0 148 265-449 16-175 (185)
8 1zkc_A Peptidyl-prolyl CIS-tra 100.0 4E-38 1.4E-42 298.0 17.3 148 262-449 16-175 (197)
9 2a2n_A Peptidylprolyl isomeras 100.0 6.9E-38 2.4E-42 291.5 17.0 135 264-438 20-154 (176)
10 2k7n_A Peptidyl-prolyl CIS-tra 100.0 6.9E-38 2.4E-42 297.6 17.0 148 264-451 10-168 (203)
11 2r99_A Peptidyl-prolyl CIS-tra 100.0 5.7E-37 2E-41 284.5 17.1 151 265-451 11-170 (173)
12 1v9t_A Cyclophilin B; beta bar 100.0 4.5E-37 1.5E-41 283.1 16.2 135 263-439 2-141 (166)
13 2z6w_A Peptidyl-prolyl CIS-tra 100.0 5.6E-37 1.9E-41 282.5 16.7 149 266-450 4-161 (165)
14 2igv_A Peptidyl-prolyl CIS-tra 100.0 6.3E-37 2.2E-41 284.1 16.7 150 265-450 3-168 (173)
15 2cmt_A Peptidyl-prolyl CIS-tra 100.0 7.9E-37 2.7E-41 283.4 17.2 150 265-450 10-168 (172)
16 1a58_A Cyclophilin; isomerase, 100.0 9.3E-37 3.2E-41 283.9 16.9 151 265-451 6-174 (177)
17 3ich_A Peptidyl-prolyl CIS-tra 100.0 6.4E-37 2.2E-41 287.7 15.7 126 290-439 28-157 (188)
18 1mzw_A Cyclophilin H, U-snRNP- 100.0 9.6E-37 3.3E-41 283.9 16.8 151 264-450 9-174 (177)
19 1qng_A Peptidyl-prolyl CIS-tra 100.0 8.6E-37 2.9E-41 282.5 16.2 150 265-450 3-167 (170)
20 3pmp_A Cyclophilin A; peptidyl 100.0 1.2E-36 4E-41 279.8 16.8 138 290-451 15-161 (164)
21 2wfi_A Peptidyl-prolyl CIS-tra 100.0 1.4E-36 4.7E-41 283.3 17.3 151 265-451 9-177 (179)
22 2poy_A Peptidyl-prolyl CIS-tra 100.0 1E-36 3.5E-41 286.0 16.4 153 263-451 17-185 (186)
23 2haq_A Cyclophilin; rotamase, 100.0 1.4E-36 4.9E-41 281.9 16.3 136 290-450 24-169 (172)
24 1w74_A Peptidyl-prolyl CIS-tra 100.0 1.3E-36 4.6E-41 286.3 16.0 133 264-439 22-171 (191)
25 3rdd_A Peptidyl-prolyl CIS-tra 100.0 2.6E-36 9E-41 282.6 16.6 153 263-451 20-181 (184)
26 2he9_A NK-tumor recognition pr 100.0 6.9E-36 2.3E-40 281.6 18.4 151 264-450 18-186 (192)
27 1lop_A Cyclophilin A; rotamase 100.0 1.8E-36 6.1E-41 278.6 14.0 130 267-439 1-139 (164)
28 2hq6_A Serologically defined c 100.0 6.5E-36 2.2E-40 280.3 17.1 143 266-449 25-180 (185)
29 3s6m_A Peptidyl-prolyl CIS-tra 100.0 2.2E-36 7.5E-41 278.4 12.9 131 266-438 4-142 (167)
30 3k2c_A Peptidyl-prolyl CIS-tra 100.0 1.1E-35 3.8E-40 280.3 17.2 152 264-451 26-188 (193)
31 4fru_A Cyclophilin B, peptidyl 100.0 1.6E-35 5.5E-40 277.2 17.7 141 260-438 9-153 (185)
32 3bkp_A Cyclophilin; malaria, i 100.0 2E-35 7E-40 285.7 18.1 157 255-451 13-195 (232)
33 2c3b_A Ppiase, cyclophilin; is 100.0 9.9E-37 3.4E-41 282.7 8.4 125 290-438 20-150 (172)
34 2ose_A Probable peptidyl-proly 100.0 2.1E-35 7.2E-40 285.9 15.6 149 258-438 7-185 (234)
35 1z81_A Cyclophilin; structural 100.0 4.1E-35 1.4E-39 283.0 16.7 153 263-451 57-227 (229)
36 1ihg_A Cyclophilin 40; ppiase 100.0 2.6E-34 9.1E-39 289.5 19.6 139 265-439 15-165 (370)
37 1vyk_A Oxygen-evolving enhance 94.5 0.073 2.5E-06 48.2 6.8 124 109-240 9-144 (149)
38 3zsu_A TLL2057 protein, cyanoq 93.2 0.24 8.1E-06 43.9 7.5 94 140-239 28-121 (130)
39 3ls0_A SLL1638 protein, PSBQ; 89.6 0.32 1.1E-05 43.3 4.4 94 140-239 30-124 (133)
40 2nnz_A Hypothetical protein; b 88.1 1.3 4.3E-05 40.1 7.4 22 293-314 40-61 (153)
41 3kop_A Uncharacterized protein 87.3 1.3 4.4E-05 41.4 7.1 33 267-314 23-55 (188)
42 1zx8_A Hypothetical protein TM 40.7 50 0.0017 29.1 6.1 56 377-442 74-129 (136)
43 2khf_A PLNJ; anti-microbial, b 29.8 13 0.00046 23.6 0.4 15 308-322 4-18 (26)
No 1
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=4.6e-91 Score=711.77 Aligned_cols=333 Identities=31% Similarity=0.532 Sum_probs=309.9
Q ss_pred CCCcccccccCCCCCCCCChhhHhhhcCC-CChhHHHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhh
Q 012579 109 SVFPANAVLYSPDTKVPRTGELALRRAIP-ANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILA 187 (460)
Q Consensus 109 ~~~~~~a~l~~p~~~~~~~~~a~LR~alP-~n~~ir~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~ 187 (460)
++.|.+|+| |+||++|||+|||||||| +|++||+||++||+|+++||+||+|||++|++||++|+++|++++++||+
T Consensus 18 ~~~~~~~~l--~~g~~~~~~~a~lr~alp~~~~~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~ 95 (369)
T 3rfy_A 18 PVIPDVSVL--ISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVA 95 (369)
T ss_dssp TTSCSCCEE--EESTTSCCHHHHHHHHSCCCCHHHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTT
T ss_pred ccCchhhcc--CCCCCCCCHHHHHhhhcCCCChhHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHh
Confidence 566788999 999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhHHhhHHHHHHHHHhhcCCCCCcCccccccCCCcCCCce
Q 012579 188 SIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGI 267 (460)
Q Consensus 188 ~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~~~L~~v~~lE~~~~~~~p~~vP~ey~~lP~L~Grat 267 (460)
+||+++|++|+++|++| +.+|+.|++++++||+|+|...++++|+.|++||++|+++|||+||++|.++|+|+||++
T Consensus 96 ~v~~~~~~~~~~~~~~l---~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le~~~~~~fp~~vP~~y~~~P~l~gra~ 172 (369)
T 3rfy_A 96 GFAESKKDHGNEMIEKL---EAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRAS 172 (369)
T ss_dssp TCCGGGHHHHHHHHHHH---HHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHHHHSSCSSCSSCCSSCTTSCEECSEEE
T ss_pred hcChhhHHHHHHHHHHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhccCCCccCchhcccCccCCCCeE
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCC-----
Q 012579 268 VELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSD----- 342 (460)
Q Consensus 268 V~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G----- 342 (460)
|+|+|+.++++.+ ..|+|+|+||++.||+||+||++||+.|||||+.|||| ++||+||||+.++|
T Consensus 173 V~m~t~~~~~~~~---------~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~ 242 (369)
T 3rfy_A 173 VDMKVKIKDNPNI---------EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFID 242 (369)
T ss_dssp EEEEEECCSCSSC---------SEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCS
T ss_pred EEEEEeccCCCcc---------cceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccC
Confidence 9999998874432 57999999999999999999999999999999999999 99999999976542
Q ss_pred ------CCCCccccCCCCCCCccCccccccC--CCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCC
Q 012579 343 ------YNLPLEIMPSGQFEPLYRTALNVQD--GELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLS 414 (460)
Q Consensus 343 ------~~iPlEi~~~G~~~Piyg~~~ed~~--~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~ 414 (460)
+.+|+|+...|.+.|+|+.+|++.. +..+.++||.+|+|||||++. ++||+||||||++.+++++ +++.+
T Consensus 243 ~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~-gPnSngSQFFItl~d~~L~-~~~~~ 320 (369)
T 3rfy_A 243 PSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEF-ENDSGSSQVFWLLKESELT-PSNSN 320 (369)
T ss_dssp CCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCC-CCCCSSCCCCCCCEEEEEC-SCCCS
T ss_pred cccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCC-CCCCccceEEEEecccccC-CCCCc
Confidence 5789999999999999999988632 135688999999999999831 1269999999999886654 67899
Q ss_pred CCCCCccEEEEEeccchHHHHhhcCCceEEEEEEeCCcccCCCC
Q 012579 415 FDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPN 458 (460)
Q Consensus 415 ~LDG~ytVFG~VveG~DVL~kI~~GD~I~sakVv~g~e~l~~p~ 458 (460)
||||+|+|||+|++|||||++|++||+|+||+|++|.|+|++|+
T Consensus 321 ~LDgkytVFG~VveGmdVVdkI~~GD~I~sv~I~~g~~~l~~p~ 364 (369)
T 3rfy_A 321 ILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLANPS 364 (369)
T ss_dssp SSCSCEEEEEEEEESTTGGGGCCTTCEEEEEEEEECGGGEESCC
T ss_pred ccCCCeeEEEEEecCHHHHHHHhCCCceEEEEEecCCccccCCc
Confidence 99999999999999999999999999999999999999999997
No 2
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=4.1e-39 Score=295.51 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=125.2
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCC
Q 012579 266 GIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNL 345 (460)
Q Consensus 266 atV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~i 345 (460)
..|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.|..
T Consensus 6 ~~v~~~T~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~g- 67 (160)
T 2fu0_A 6 KSAIIYTTMGD-----------------IHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTG- 67 (160)
T ss_dssp CEEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSC-
T ss_pred CEEEEEecCcc-----------------EEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCC-
Confidence 36899999886 999999999999999999999999999999999999999999998765432
Q ss_pred CccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEE
Q 012579 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGY 425 (460)
Q Consensus 346 PlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~ 425 (460)
+.++|+.+|++ +..+.++|+.+|+|||||.++ ||++|||||++.+ .++|||+|+|||+
T Consensus 68 ---------g~si~g~~~~d--E~~~~l~h~~~G~lsmA~~gp---~s~~SQFfI~~~~--------~~~Ldg~~tvFG~ 125 (160)
T 2fu0_A 68 ---------GESIWGNEFED--EFFDHLNHSKPFMVSMANCGP---NTNGSQFFITTVP--------CPWLDFKHTVFGK 125 (160)
T ss_dssp ---------CCCTTSSCBCC--CCBTTBCSSSSSEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSCEEEE
T ss_pred ---------CCcccCCCccc--cccCCcccCCceEEEEecCCC---CCcccEEEEECCC--------CCccCCCcEEEEE
Confidence 34688888876 234578899999999999985 6999999999987 8899999999999
Q ss_pred EeccchHHHHhhcCC-----------ceEEEEEE
Q 012579 426 TTVGRDILPQIKTGD-----------VIQSAKLI 448 (460)
Q Consensus 426 VveG~DVL~kI~~GD-----------~I~sakVv 448 (460)
|++|||||++|+... +|.+++|.
T Consensus 126 Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~ 159 (160)
T 2fu0_A 126 VTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN 159 (160)
T ss_dssp EEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred EEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence 999999999998731 57777765
No 3
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=7.9e-39 Score=293.62 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=125.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
.|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.|..
T Consensus 2 ~v~~~T~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~g-- 62 (161)
T 2ok3_A 2 SVTLHTDVGD-----------------IKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG-- 62 (161)
T ss_dssp EEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSC--
T ss_pred EEEEEeCCcc-----------------EEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCC--
Confidence 4788998876 999999999999999999999999999999999999999999998765532
Q ss_pred ccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEE
Q 012579 347 LEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYT 426 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~V 426 (460)
+.++|+.++++ +..+.++|+.+|+|||||.++ ||++|||||++.+ .++|||+|+|||+|
T Consensus 63 --------g~si~g~~~~d--E~~~~l~h~~~G~lsma~~gp---~s~~SQFfI~~~~--------~~~Ldg~~tvFG~V 121 (161)
T 2ok3_A 63 --------GNSIWGKKFED--EYSEYLKHNVRGVVSMANNGP---NTNGSQFFITYGK--------QPHLDMKYTVFGKV 121 (161)
T ss_dssp --------CCCTTSSCBCC--CCCTTCCSCSTTEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSCEEEEE
T ss_pred --------CCcccCCcccc--ccCcCcCcCCCeEEEEecCCC---CCcceEEEEEcCC--------CCccCCCEeEEEEE
Confidence 35688888876 234678899999999999985 6999999999987 88999999999999
Q ss_pred eccchHHHHhhcC------C------ceEEEEEEe
Q 012579 427 TVGRDILPQIKTG------D------VIQSAKLIE 449 (460)
Q Consensus 427 veG~DVL~kI~~G------D------~I~sakVv~ 449 (460)
++|||||++|+.. | +|.+++|+.
T Consensus 122 v~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~ 156 (161)
T 2ok3_A 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_dssp EECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred eCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence 9999999999873 2 578888875
No 4
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=7.9e-39 Score=295.21 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=121.0
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCC
Q 012579 264 GRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDY 343 (460)
Q Consensus 264 GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~ 343 (460)
+...|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.++|.
T Consensus 10 ~~~~v~l~t~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~ 72 (166)
T 2x7k_A 10 QPPNVYLETSMGI-----------------IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72 (166)
T ss_dssp CCSEEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSS
T ss_pred CCCEEEEEeCCCc-----------------EEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCC
Confidence 3468999999886 99999999999999999999999999999999999999999999876553
Q ss_pred CCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEE
Q 012579 344 NLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVF 423 (460)
Q Consensus 344 ~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVF 423 (460)
. +.++|+.+|++ +..+.++|+.+|+|||||.++ ||++|||||++.+ .++|||+|+||
T Consensus 73 g----------g~si~g~~~~d--E~~~~l~h~~~G~lsmAn~gp---~s~gSQFfI~~~~--------~~~Ldg~~tvF 129 (166)
T 2x7k_A 73 G----------GASIYGKQFED--ELHPDLKFTGAGILAMANAGP---DTNGSQFFVTLAP--------TQWLDGKHTIF 129 (166)
T ss_dssp C----------CCCTTSSCBCC--CCCTTSCCCSTTEEEECBSST---TCBCSCEEEESSC--------CGGGTTTSCEE
T ss_pred C----------CCccCCCcccc--ccccccCCCCCeEEEEeeCCC---CCccceEEEECCC--------CCccCCCeeEE
Confidence 2 34688888876 233688888899999999885 7999999999987 88999999999
Q ss_pred EEEeccchHHHHhhcC
Q 012579 424 GYTTVGRDILPQIKTG 439 (460)
Q Consensus 424 G~VveG~DVL~kI~~G 439 (460)
|+|++|||||++|+..
T Consensus 130 G~Vv~G~dvv~~I~~~ 145 (166)
T 2x7k_A 130 GRVCQGIGMVNRVGMV 145 (166)
T ss_dssp EEEEECHHHHHHHTTS
T ss_pred EEEEcCHHHHHHHHcC
Confidence 9999999999999973
No 5
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=4e-39 Score=304.59 Aligned_cols=147 Identities=21% Similarity=0.249 Sum_probs=127.2
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCC
Q 012579 263 TGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSD 342 (460)
Q Consensus 263 ~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G 342 (460)
.++..|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.++|
T Consensus 36 ~~~~~V~l~T~~G~-----------------I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g 98 (196)
T 2b71_A 36 TERGYITIYTNLGD-----------------FEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTG 98 (196)
T ss_dssp HHSCEEEEEETTEE-----------------EEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSS
T ss_pred CCCcEEEEEeCCCC-----------------EEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCC
Confidence 45668999999876 9999999999999999999999999999999999999999999987655
Q ss_pred CCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccE
Q 012579 343 YNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSV 422 (460)
Q Consensus 343 ~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytV 422 (460)
.. +.++|+.+|++ +..+.++|+.+|+||||+.++ ||+||||||++.+ .++|||+|+|
T Consensus 99 ~g----------g~si~g~~~~d--E~~~~l~h~~~G~lsMAn~gp---ns~gSQFFIt~~~--------~~~LDg~~tV 155 (196)
T 2b71_A 99 KG----------GKSIYGEYFED--EINKELKHTGAGILSMSNNGP---NTNSSQFFITLAP--------LPHLDGKHTI 155 (196)
T ss_dssp SC----------CCBTTBSCBCC--CCCTTCCCCSTTEEEECCSST---TCBSSCEEEESSC--------CGGGTTTSCE
T ss_pred CC----------CCccCCCcccc--cccCCcCcCCCeEEEEccCCC---CCcccEEEEECCC--------CCccCCCEeE
Confidence 32 34688888876 235788899999999999886 7999999999987 8999999999
Q ss_pred EEEEeccchHHHHhhcCC-----------ceEEEEEEe
Q 012579 423 FGYTTVGRDILPQIKTGD-----------VIQSAKLIE 449 (460)
Q Consensus 423 FG~VveG~DVL~kI~~GD-----------~I~sakVv~ 449 (460)
||+|++|||||++|+... +|.+++|+.
T Consensus 156 FG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~ 193 (196)
T 2b71_A 156 FARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193 (196)
T ss_dssp EEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred EEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence 999999999999999732 466777654
No 6
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=2.7e-38 Score=299.69 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=124.7
Q ss_pred cCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecC-----
Q 012579 262 LTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKG----- 336 (460)
Q Consensus 262 L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgG----- 336 (460)
++.+++|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+|||
T Consensus 3 ~~~~~~v~l~T~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~ 65 (201)
T 3bo7_A 3 LKKKGYLRIVTTQGS-----------------LNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELR 65 (201)
T ss_dssp --CCEEEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGC
T ss_pred CCCceEEEEEeCCCC-----------------EEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCccccc
Confidence 456788999999887 9999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCCcc-------CccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCC
Q 012579 337 LDKGSDYNLPLEIMPSGQFEPLY-------RTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAG 409 (460)
Q Consensus 337 d~~~~G~~iPlEi~~~G~~~Piy-------g~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~ 409 (460)
|+.++|.. +.++| +.+|++ +..+.++|+.+|+|||||+++ ||+||||||++.+
T Consensus 66 Dp~~~g~g----------g~si~~~~~~~~g~~f~d--E~~~~l~h~~~G~lsmA~~gp---~s~gSQFFIt~~~----- 125 (201)
T 3bo7_A 66 QPSKKKEV----------QQSPRSISGFPGGAPFED--EFDNRLVHQGIGVLSMANDGK---HSNLSEFFITFKS----- 125 (201)
T ss_dssp CC-----------------CCSSCCCSSTTCCCBCC--CCCTTCCCCSTTEEEECCSST---TCBSSCEEEESSC-----
T ss_pred CCCCCCCC----------CccccccccccCCCcccC--cccCCCCcCCCcEEEEeeCCC---CCcccEEEEECCC-----
Confidence 88755432 23456 566665 235788899999999999875 7999999999987
Q ss_pred CCCCCCCCCCccEEEEEeccchHHHHhhcCC-----------ceEEEEEEeC
Q 012579 410 LGGLSFDEGQFSVFGYTTVGRDILPQIKTGD-----------VIQSAKLIEG 450 (460)
Q Consensus 410 p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD-----------~I~sakVv~g 450 (460)
.++|||+|+|||+|++|||||++|+... +|.++.|+..
T Consensus 126 ---~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~v~~d 174 (201)
T 3bo7_A 126 ---CEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVFKN 174 (201)
T ss_dssp ---CGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEEEEEEEC
T ss_pred ---CcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEEcC
Confidence 8999999999999999999999999742 5888888764
No 7
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=2.1e-38 Score=297.18 Aligned_cols=148 Identities=20% Similarity=0.263 Sum_probs=127.5
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCC
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYN 344 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~ 344 (460)
...|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.|..
T Consensus 16 ~~~v~i~t~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~g 78 (185)
T 2poe_A 16 FQGVRIITNYGD-----------------LKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78 (185)
T ss_dssp CCEEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSC
T ss_pred ceEEEEEecCcc-----------------EEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCC
Confidence 447899998876 999999999999999999999999999999999999999999998765532
Q ss_pred CCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCC-CCCCCCCceEEEEecCCccCCCCCCCCCCCCccEE
Q 012579 345 LPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSED-SEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVF 423 (460)
Q Consensus 345 iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~-~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVF 423 (460)
+.++|+.+|++ +..+.++|+.+|+|||||.+. .++||+||||||++.+ .++|||+|+||
T Consensus 79 ----------g~si~g~~~~d--E~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~--------~~~LDg~~tVF 138 (185)
T 2poe_A 79 ----------GESIYGRYFDD--EIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSS--------LPQLNGEYVIF 138 (185)
T ss_dssp ----------CCBTTBSCBCC--CCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSC--------CGGGTTTSCEE
T ss_pred ----------CCccCCCcccc--cccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCC--------CCccCCCeeEE
Confidence 34688888876 233788899999999999982 1126999999999987 89999999999
Q ss_pred EEEeccchHHHHhhcC-----C------ceEEEEEEe
Q 012579 424 GYTTVGRDILPQIKTG-----D------VIQSAKLIE 449 (460)
Q Consensus 424 G~VveG~DVL~kI~~G-----D------~I~sakVv~ 449 (460)
|+|++|||||++|+.. | +|.+++|+.
T Consensus 139 G~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~~ 175 (185)
T 2poe_A 139 GKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHS 175 (185)
T ss_dssp EEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEEC
T ss_pred EEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEEC
Confidence 9999999999999873 1 578888875
No 8
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=4e-38 Score=298.02 Aligned_cols=148 Identities=24% Similarity=0.341 Sum_probs=129.3
Q ss_pred cCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCC
Q 012579 262 LTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGS 341 (460)
Q Consensus 262 L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~ 341 (460)
.+...+|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.++
T Consensus 16 ~~~~~~v~l~T~~G~-----------------I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~ 78 (197)
T 1zkc_A 16 PRGSGYVRLHTNKGD-----------------LNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGT 78 (197)
T ss_dssp CCSCEEEEEEETTEE-----------------EEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSS
T ss_pred CCCCcEEEEEeCCcc-----------------EEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCC
Confidence 356778999999887 999999999999999999999999999999999999999999998765
Q ss_pred CCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCcc
Q 012579 342 DYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFS 421 (460)
Q Consensus 342 G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~yt 421 (460)
|.. +.++|+.+|++ +..+.++|+.+|+|||||.++ ||++|||||++.+ .++|||+|+
T Consensus 79 g~G----------g~si~g~~f~d--E~~~~l~h~~~G~lsMAn~gp---~sngSQFFIt~~~--------~~~LDg~~t 135 (197)
T 1zkc_A 79 GTG----------GESYWGKPFKD--EFRPNLSHTGRGILSMANSGP---NSNRSQFFITFRS--------CAYLDKKHT 135 (197)
T ss_dssp SSC----------CCBTTBSCBCC--CCCTTCCSCSTTEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSC
T ss_pred CCC----------CCccCCCcccc--ccCcCcCCCCceEEEEecCCC---CCcccEEEEEcCC--------CCccCCCcc
Confidence 532 34678888876 235788899999999999985 6999999999987 899999999
Q ss_pred EEEEEeccchHHHHhhcC------C------ceEEEEEEe
Q 012579 422 VFGYTTVGRDILPQIKTG------D------VIQSAKLIE 449 (460)
Q Consensus 422 VFG~VveG~DVL~kI~~G------D------~I~sakVv~ 449 (460)
|||+|++|||||++|+.. | +|.++.|+.
T Consensus 136 VFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~ 175 (197)
T 1zkc_A 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFV 175 (197)
T ss_dssp EEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEE
T ss_pred EEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEc
Confidence 999999999999999862 2 467777765
No 9
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=6.9e-38 Score=291.54 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=120.1
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCC
Q 012579 264 GRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDY 343 (460)
Q Consensus 264 GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~ 343 (460)
....|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.++|.
T Consensus 20 ~~~~v~~~t~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~ 82 (176)
T 2a2n_A 20 VSDSAIIHTSMGD-----------------IHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGM 82 (176)
T ss_dssp CCSEEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSS
T ss_pred CCCEEEEEecCcc-----------------EEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCC
Confidence 3457999999886 99999999999999999999999999999999999999999999876543
Q ss_pred CCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEE
Q 012579 344 NLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVF 423 (460)
Q Consensus 344 ~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVF 423 (460)
. +.++|+.+|++ +..+.++|+.+|+|||||.++ ||++|||||++.+ .+||||+|+||
T Consensus 83 g----------g~si~g~~~~d--E~~~~l~h~~~G~lsmA~~gp---~s~gSQFFIt~~~--------~~~LDg~~tVF 139 (176)
T 2a2n_A 83 G----------GESIWGGEFED--EFHSTLRHDRPYTLSMANAGS---NTNGSQFFITVVP--------TPWLDNKHTVF 139 (176)
T ss_dssp C----------CCCTTSSCBCC--CCCTTCCSCSSSEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSCEE
T ss_pred C----------CCcccCCcccc--ccccccccCCceEEEEEeCCC---CCcccEEEEECCC--------CCccCCCeeEE
Confidence 2 34688888876 234478899999999999885 7999999999987 88999999999
Q ss_pred EEEeccchHHHHhhc
Q 012579 424 GYTTVGRDILPQIKT 438 (460)
Q Consensus 424 G~VveG~DVL~kI~~ 438 (460)
|+|++|||||++|+.
T Consensus 140 G~Vv~Gmdvv~~I~~ 154 (176)
T 2a2n_A 140 GRVTKGMEVVQRISN 154 (176)
T ss_dssp EEEEECHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHc
Confidence 999999999999986
No 10
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=6.9e-38 Score=297.59 Aligned_cols=148 Identities=24% Similarity=0.278 Sum_probs=130.1
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCC
Q 012579 264 GRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDY 343 (460)
Q Consensus 264 GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~ 343 (460)
....|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.|.
T Consensus 10 ~~~~V~l~T~~G~-----------------I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~ 72 (203)
T 2k7n_A 10 QPPNVYLETSMGI-----------------IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72 (203)
T ss_dssp CCSEEEEEESSCE-----------------EEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSS
T ss_pred CCCEEEEEeCCCc-----------------EEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCC
Confidence 4468999999987 99999999999999999999999999999999999999999999876543
Q ss_pred CCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEE
Q 012579 344 NLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVF 423 (460)
Q Consensus 344 ~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVF 423 (460)
. +.++|+.+|++ +..+.++|+.+|+|||||.++ ||++|||||++.+ .++|||+|+||
T Consensus 73 g----------g~si~g~~f~d--E~~~~l~h~~~G~lsMAn~gp---nsngSQFFIt~~~--------~~~LDg~~tVF 129 (203)
T 2k7n_A 73 G----------GASIYGKQFED--ELHPDLKFTGAGILAMANAGP---DTNGSQFFVTLAP--------TQWLDGKHTIF 129 (203)
T ss_dssp C----------CCTTSCSCBCC--CCCCSSCCCSSCEEEEEESST---TCEEEEEEEESSC--------CCSSTTTSCEE
T ss_pred C----------CCccCCCcccc--cccccccCCCCeEEEEeeCCC---CCcccEEEEEcCC--------CCccCCCeeEE
Confidence 2 34678888876 233688888899999999885 7999999999987 88999999999
Q ss_pred EEEeccchHHHHhhcC-----C------ceEEEEEEeCC
Q 012579 424 GYTTVGRDILPQIKTG-----D------VIQSAKLIEGQ 451 (460)
Q Consensus 424 G~VveG~DVL~kI~~G-----D------~I~sakVv~g~ 451 (460)
|+|++|||||++|+.. | +|++++|+++.
T Consensus 130 G~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~~ 168 (203)
T 2k7n_A 130 GRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGG 168 (203)
T ss_dssp EEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCCC
T ss_pred EEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEecC
Confidence 9999999999999973 2 58899998764
No 11
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=5.7e-37 Score=284.48 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=126.1
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHH--hcCC-cCCceeeEeeCCcEEecCCCC-C
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLV--IDGA-YDGTRLNCTNQAVLTEKGLDK-G 340 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv--~~Gf-YDGt~FhRvv~~fviQgGd~~-~ 340 (460)
+..|.|.+..+. ...|+|+|+||++.||+||+||++|| ++|| |||+.||||+++||+||||+. +
T Consensus 11 ~~~v~~di~i~~------------t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~ 78 (173)
T 2r99_A 11 NPQVYMDIKIGN------------KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNH 78 (173)
T ss_dssp CCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS
T ss_pred CCEEEEEEEECC------------ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCC
Confidence 446777776653 24688999999999999999999999 4798 999999999999999999975 2
Q ss_pred CCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCc
Q 012579 341 SDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQF 420 (460)
Q Consensus 341 ~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~y 420 (460)
.|.. +.++|+.+|++ |...++|+.+|+|||||.++ |+++|||||++.+ .+||||+|
T Consensus 79 ~g~g----------g~si~g~~f~d---E~~~l~h~~~G~lsmA~~gp---~t~gSQFfIt~~~--------~~~LDg~~ 134 (173)
T 2r99_A 79 NGTG----------GKSIYGKKFDD---ENFILKHTGPGLLSMANSGP---NTNGSQFFLTCDK--------TDWLDGKH 134 (173)
T ss_dssp SSSC----------CCBTTBSCBCC---CCCCSCCCSSSEEEECCSST---TCBCSCEEEESSC--------CGGGTTTS
T ss_pred CCCC----------CCccCCCcccC---cccCcccCCCcEEEEccCCC---CCcccEEEEECCC--------CCccCCCe
Confidence 3321 34688888886 67788899999999999985 6999999999987 89999999
Q ss_pred cEEEEEeccchHHHHhhcC-----CceEEEEEEeCC
Q 012579 421 SVFGYTTVGRDILPQIKTG-----DVIQSAKLIEGQ 451 (460)
Q Consensus 421 tVFG~VveG~DVL~kI~~G-----D~I~sakVv~g~ 451 (460)
+|||+|++|||||++|+.. ..++.|+|.+..
T Consensus 135 tVFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~cG 170 (173)
T 2r99_A 135 VVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCG 170 (173)
T ss_dssp CEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEE
T ss_pred eEEEEEEcCHHHHHHHHhCCCCCCCCCCCeEEEEee
Confidence 9999999999999999972 235566666543
No 12
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=4.5e-37 Score=283.10 Aligned_cols=135 Identities=26% Similarity=0.314 Sum_probs=113.7
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCC
Q 012579 263 TGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSD 342 (460)
Q Consensus 263 ~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G 342 (460)
+|+..|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.+
T Consensus 2 ~~~~~v~~~t~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~ 64 (166)
T 1v9t_A 2 KGDPHVLLTTSAGN-----------------IELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQM 64 (166)
T ss_dssp CCSCEEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTC
T ss_pred CCCeEEEEEeCCcc-----------------EEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCC
Confidence 47788999999876 9999999999999999999999999999999999999999999986432
Q ss_pred CCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCC---
Q 012579 343 YNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQ--- 419 (460)
Q Consensus 343 ~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~--- 419 (460)
. ...|+.++++ |.....+|.+|+|||||.+.+ ||++|||||++.+ .+||||+
T Consensus 65 ~------------~~~~g~~~~d---E~~~~l~~~~G~lsmA~~~~p--~t~gSQFfI~~~~--------~~~Ld~~~~~ 119 (166)
T 1v9t_A 65 Q------------QKKPNPPIKN---EADNGLRNTRGTIAMARTADK--DSATSQFFINVAD--------NAFLDHGQRD 119 (166)
T ss_dssp C------------BCCCCCCBCC---CGGGSCCCCTTEEEECCCSST--TCBCSCEEEESSC--------CGGGSCCSSC
T ss_pred C------------CCCCCCcccc---cccccccCCceEEEEeecCCC--CCccceEEEEeCC--------ccccCCccCc
Confidence 1 1124455554 332223678999999997533 6999999999988 7899988
Q ss_pred --ccEEEEEeccchHHHHhhcC
Q 012579 420 --FSVFGYTTVGRDILPQIKTG 439 (460)
Q Consensus 420 --ytVFG~VveG~DVL~kI~~G 439 (460)
|+|||+|++|||||++|+..
T Consensus 120 ~~~tvFG~Vv~G~dvv~~I~~~ 141 (166)
T 1v9t_A 120 FGYAVFGKVVKGMDVADKISQV 141 (166)
T ss_dssp CCCCEEEEEEECHHHHHHHHTS
T ss_pred CCeeEEEEEecCHHHHHHHHhC
Confidence 99999999999999999873
No 13
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=5.6e-37 Score=282.51 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=125.0
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh--cCC-cCCceeeEeeCCcEEecCCCC-CC
Q 012579 266 GIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI--DGA-YDGTRLNCTNQAVLTEKGLDK-GS 341 (460)
Q Consensus 266 atV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YDGt~FhRvv~~fviQgGd~~-~~ 341 (460)
..|.|.++.++ ...|+|+|+||++.||+||+||++||+ +|| |||+.||||+++||+||||+. +.
T Consensus 4 ~~v~~di~i~~------------t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~ 71 (165)
T 2z6w_A 4 PLVYLDVDANG------------KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHN 71 (165)
T ss_dssp CEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred CEEEEEEEECC------------EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCC
Confidence 35777776654 246899999999999999999999999 999 999999999999999999974 23
Q ss_pred CCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCcc
Q 012579 342 DYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFS 421 (460)
Q Consensus 342 G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~yt 421 (460)
|.. +.++|+.+|++ |.+.++|+.+|+|||||.++ ||++|||||++.+ .+||||+|+
T Consensus 72 g~g----------g~si~g~~f~d---E~~~l~h~~~G~lsmA~~gp---~s~~SQFfI~~~~--------~~~Ldg~~~ 127 (165)
T 2z6w_A 72 GTG----------GKSIYGSRFPD---ENFTLKHVGPGVLSMANAGP---NTNGSQFFICTIK--------TDWLDGKHV 127 (165)
T ss_dssp SSC----------CCBTTBSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSC
T ss_pred CCC----------CCcccCCcccC---cccccccCCCCEEEEeeCCC---CCcccEEEEEcCC--------CcccCCCee
Confidence 321 24678888876 67888888899999999985 6999999999987 899999999
Q ss_pred EEEEEeccchHHHHhhcC-----CceEEEEEEeC
Q 012579 422 VFGYTTVGRDILPQIKTG-----DVIQSAKLIEG 450 (460)
Q Consensus 422 VFG~VveG~DVL~kI~~G-----D~I~sakVv~g 450 (460)
|||+|++|||||++|+.. ...+.|+|.+.
T Consensus 128 vFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~~ 161 (165)
T 2z6w_A 128 VFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC 161 (165)
T ss_dssp EEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEE
T ss_pred EEEEEEcCHHHHHHHHhCCCCCCCCCCcEEEEEe
Confidence 999999999999999862 23455555543
No 14
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=6.3e-37 Score=284.07 Aligned_cols=150 Identities=21% Similarity=0.299 Sum_probs=125.3
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhc--C--------CcCCceeeEeeCCcEEe
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVID--G--------AYDGTRLNCTNQAVLTE 334 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--G--------fYDGt~FhRvv~~fviQ 334 (460)
+..|.|.++.+. ...|+|+|+||++.||+||+||++||+. | ||||+.||||+++||+|
T Consensus 3 ~~~v~~di~i~~------------~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQ 70 (173)
T 2igv_A 3 RSKVFFDITIGG------------KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQ 70 (173)
T ss_dssp CCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEE
T ss_pred CCEEEEEEEECC------------EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEE
Confidence 346778887664 2579999999999999999999999976 6 79999999999999999
Q ss_pred cCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCC
Q 012579 335 KGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGL 413 (460)
Q Consensus 335 gGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~ 413 (460)
|||+. +.|.. +.++|+.+|++ |.+.++|+.+|+|||||.++ ||++|||||++.+ .
T Consensus 71 gGd~~~~~G~g----------g~siyg~~f~d---E~~~l~h~~~G~lsmAn~gp---~tngSQFfIt~~~--------~ 126 (173)
T 2igv_A 71 GGDFTRGNGTG----------GESIYGEKFPD---ENFKEKHTGPGVLSMANAGP---NTNGSQFFLCTVK--------T 126 (173)
T ss_dssp ECCTTTSSSSC----------CCBTTBSCBCC---CCCCSCCCSTTEEEECCSST---TCBSSCEEEESSC--------C
T ss_pred cCCCCCCCCCC----------CCccCCCcccC---cccccCCCCCeEEEEeeCCC---CCcceEEEEEcCC--------c
Confidence 99975 33321 34678888886 67788899999999999985 6999999999987 8
Q ss_pred CCCCCCccEEEEEeccchHHHHhhcC-----CceEEEEEEeC
Q 012579 414 SFDEGQFSVFGYTTVGRDILPQIKTG-----DVIQSAKLIEG 450 (460)
Q Consensus 414 ~~LDG~ytVFG~VveG~DVL~kI~~G-----D~I~sakVv~g 450 (460)
+||||+|+|||+|++|||||++|+.. ..++.|+|.+.
T Consensus 127 ~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~~ 168 (173)
T 2igv_A 127 EWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADC 168 (173)
T ss_dssp GGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEE
T ss_pred cccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEEe
Confidence 99999999999999999999999873 23445555443
No 15
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=7.9e-37 Score=283.40 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=124.9
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh--cCC-cCCceeeEeeCCcEEecCCCC-C
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI--DGA-YDGTRLNCTNQAVLTEKGLDK-G 340 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YDGt~FhRvv~~fviQgGd~~-~ 340 (460)
+..|.|.++.++ ...|+|+|+||++.||+||+||++||+ +|| |||+.||||+++||+||||+. +
T Consensus 10 ~~~v~~di~i~~------------t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~ 77 (172)
T 2cmt_A 10 LPRVFFDIRIGN------------GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKG 77 (172)
T ss_dssp CCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTS
T ss_pred CCEEEEEEEECC------------eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCC
Confidence 346777766653 246889999999999999999999997 589 999999999999999999975 3
Q ss_pred CCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCc
Q 012579 341 SDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQF 420 (460)
Q Consensus 341 ~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~y 420 (460)
.|.. +.++|+.+|++ |.+.++|+.+|+|||||+++ ||++|||||++.+ .+||||+|
T Consensus 78 ~G~g----------g~si~g~~f~d---E~~~l~h~~~G~lsmA~~gp---~t~gSQFfIt~~~--------~~~LDg~~ 133 (172)
T 2cmt_A 78 DGTG----------GKSIYGRKFDD---ENFQLRHEGFGVLSMANSGP---NTNGSQFFICTTK--------CDWLDGKH 133 (172)
T ss_dssp SSSC----------CCBTTBSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------CGGGTTTS
T ss_pred CCCC----------CCccCCCcccc---cccCcccCCceEEEEeeCCC---CCcccEEEEECCC--------CCccCCCe
Confidence 3321 34678888886 66788899999999999885 6999999999987 89999999
Q ss_pred cEEEEEeccchHHHHhhcC-----CceEEEEEEeC
Q 012579 421 SVFGYTTVGRDILPQIKTG-----DVIQSAKLIEG 450 (460)
Q Consensus 421 tVFG~VveG~DVL~kI~~G-----D~I~sakVv~g 450 (460)
+|||+|++|||||++|+.. -.++.|+|.+.
T Consensus 134 tvFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~~ 168 (172)
T 2cmt_A 134 VVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRC 168 (172)
T ss_dssp CEEEEEEECHHHHHHGGGGCCTTCCCSSCEEEEEE
T ss_pred eEEEEEEcCHHHHHHHHhCCCCCCCCCCCEEEEEe
Confidence 9999999999999999873 23455555543
No 16
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=9.3e-37 Score=283.91 Aligned_cols=151 Identities=20% Similarity=0.209 Sum_probs=126.6
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhc--------C---CcCCceeeEeeCCcEE
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVID--------G---AYDGTRLNCTNQAVLT 333 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--------G---fYDGt~FhRvv~~fvi 333 (460)
+..|.|.++.++ ...|+|+|+||++.||+||+||++||+. | ||||+.||||+++||+
T Consensus 6 ~~~v~~di~i~~------------~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~i 73 (177)
T 1a58_A 6 RRRVFLDVTIDG------------NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMI 73 (177)
T ss_dssp CEEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEE
T ss_pred CcEEEEEEEECC------------EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEE
Confidence 456777777664 2579999999999999999999999974 4 9999999999999999
Q ss_pred ecCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCC
Q 012579 334 EKGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGG 412 (460)
Q Consensus 334 QgGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g 412 (460)
||||+. +.|.. +.++|+.+|++ |...++|+.+|+|||||.++ ||++|||||++.+
T Consensus 74 QgGd~~~~~g~g----------g~si~g~~f~d---E~~~~~h~~~G~lsmAn~gp---~tngSQFfIt~~~-------- 129 (177)
T 1a58_A 74 QGGDFTKGDGTG----------GESIYGGMFDD---EEFVMKHDEPFVVSMANKGP---NTNGSQFFITTTP-------- 129 (177)
T ss_dssp EECCCSSSSSSC----------CCCTTSSCBCC---CCCCSCCCSSSEEEECCSST---TCBCSCEEEESSC--------
T ss_pred EeCCccCCCCCC----------CCcccCCcccC---cccCcccCCCeEEEEeeCCC---CCceeEEEEECCC--------
Confidence 999975 33321 34688888886 66778899999999999985 7999999999988
Q ss_pred CCCCCCCccEEEEEeccchHHHHhhcCC------ceEEEEEEeCC
Q 012579 413 LSFDEGQFSVFGYTTVGRDILPQIKTGD------VIQSAKLIEGQ 451 (460)
Q Consensus 413 ~~~LDG~ytVFG~VveG~DVL~kI~~GD------~I~sakVv~g~ 451 (460)
.+||||+|+|||+|++|||||++|+... .++.|+|.+..
T Consensus 130 ~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G 174 (177)
T 1a58_A 130 APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174 (177)
T ss_dssp CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEE
T ss_pred CCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeE
Confidence 8999999999999999999999999742 24556666543
No 17
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=6.4e-37 Score=287.73 Aligned_cols=126 Identities=20% Similarity=0.282 Sum_probs=112.4
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHHh--cCC-cCCceeeEeeCCcEEecCC-CCCCCCCCCccccCCCCCCCccCccccc
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLVI--DGA-YDGTRLNCTNQAVLTEKGL-DKGSDYNLPLEIMPSGQFEPLYRTALNV 365 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YDGt~FhRvv~~fviQgGd-~~~~G~~iPlEi~~~G~~~Piyg~~~ed 365 (460)
..|+|+|+||++.||+||+||++||+ +|| |||+.||||+++||+|||| +.+.|.. +.++|+.+|++
T Consensus 28 ~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g----------g~si~g~~f~d 97 (188)
T 3ich_A 28 DVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTG----------GKSIYGERFPD 97 (188)
T ss_dssp EEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSC----------CCBTTBSCBCC
T ss_pred eceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCC----------CccccCCcccc
Confidence 46789999999999999999999994 899 9999999999999999999 4444432 34689988886
Q ss_pred cCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcC
Q 012579 366 QDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTG 439 (460)
Q Consensus 366 ~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~G 439 (460)
|.+.++|+.+|+|||||.++ ||++|||||++.+ .+||||+|+|||+|++|||||++|+..
T Consensus 98 ---E~~~l~h~~~G~lsmAn~gp---~tngSQFfIt~~~--------~~~LDg~~tVFG~Vv~G~dvv~~I~~~ 157 (188)
T 3ich_A 98 ---ENFKLKHYGPGWVSMANAGK---DTNGSQFFITTVK--------TAWLDGKHVVFGKVLEGMEVVRKVEST 157 (188)
T ss_dssp ---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred ---cccCcccCCCeEEEEccCCC---CCcccEEEEECCC--------CcccCCCeeEEEEEeCCHHHHHHHHhC
Confidence 67888899999999999985 6999999999988 889999999999999999999999973
No 18
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=9.6e-37 Score=283.91 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=127.6
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCC--------cCCceeeEeeCCcEEec
Q 012579 264 GRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGA--------YDGTRLNCTNQAVLTEK 335 (460)
Q Consensus 264 GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~Gf--------YDGt~FhRvv~~fviQg 335 (460)
.+..|.|+++.+. ...|+|+|+||++.||+||+||++||+.+| |||+.||||+++||+||
T Consensus 9 ~~~~v~~di~i~~------------t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQg 76 (177)
T 1mzw_A 9 VNPVVFFDVSIGG------------QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQG 76 (177)
T ss_dssp CCCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEE
T ss_pred CCCEEEEEEEECC------------eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEc
Confidence 3556888887764 257889999999999999999999999998 99999999999999999
Q ss_pred CCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCC
Q 012579 336 GLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLS 414 (460)
Q Consensus 336 Gd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~ 414 (460)
||+. +.|.. +.++|+.+|++ |...++|+.+|+|||||.++ ||++|||||++.+ .+
T Consensus 77 Gd~~~~~G~g----------g~si~g~~f~d---E~~~l~h~~~G~lsmAn~gp---~tngSQFfIt~~~--------~~ 132 (177)
T 1mzw_A 77 GDFVNGDGTG----------VASIYRGPFAD---ENFKLRHSAPGLLSMANSGP---STNGCQFFITCSK--------CD 132 (177)
T ss_dssp CCTTTSSSCC----------CCCTTSSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------CG
T ss_pred CCcccCCCCC----------CCccCCCcccC---cccccccCCCCEEEEccCCC---CCcceEEEEECCC--------CC
Confidence 9975 33321 24688888886 66788899999999999985 7999999999987 89
Q ss_pred CCCCCccEEEEEeccchHHHHhhcCC------ceEEEEEEeC
Q 012579 415 FDEGQFSVFGYTTVGRDILPQIKTGD------VIQSAKLIEG 450 (460)
Q Consensus 415 ~LDG~ytVFG~VveG~DVL~kI~~GD------~I~sakVv~g 450 (460)
||||+|+|||+|++|||||++|+... ..+.|+|.+.
T Consensus 133 ~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~c 174 (177)
T 1mzw_A 133 WLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQC 174 (177)
T ss_dssp GGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEE
T ss_pred ccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEec
Confidence 99999999999999999999999743 2455666554
No 19
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=8.6e-37 Score=282.47 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=126.5
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh-cCC--------cCCceeeEeeCCcEEec
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI-DGA--------YDGTRLNCTNQAVLTEK 335 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~-~Gf--------YDGt~FhRvv~~fviQg 335 (460)
+..|.|.++.+. ...|+|+|+||++.||+||+||++||+ .|| |||+.||||+++||+||
T Consensus 3 ~~~v~~di~i~~------------~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQg 70 (170)
T 1qng_A 3 RSKVFFDISIDN------------SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQG 70 (170)
T ss_dssp SCEEEEEEEESS------------SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEE
T ss_pred CCEEEEEEeECC------------EeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEc
Confidence 346788888764 257999999999999999999999998 599 99999999999999999
Q ss_pred CCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCC
Q 012579 336 GLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLS 414 (460)
Q Consensus 336 Gd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~ 414 (460)
||+. +.|.. +.++|+.+|++ |.+.++|+.+|+|||||.++ ||++|||||++.+ .+
T Consensus 71 Gd~~~~~g~g----------g~si~g~~f~d---E~~~l~h~~~G~lsmAn~gp---~tngSQFfIt~~~--------~~ 126 (170)
T 1qng_A 71 GDITNGNGSG----------GESIYGRSFTD---ENFNMKHDQPGLLSMANAGP---NTNSSQFFITLVP--------CP 126 (170)
T ss_dssp CCTTTSSSSC----------CCBTTBSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------CG
T ss_pred CCccCCCCCC----------CccccCCcccc---cccccccCCCCEEEEeecCC---CCcccEEEEECCC--------Cc
Confidence 9975 33321 34688888886 67788899999999999886 7999999999987 89
Q ss_pred CCCCCccEEEEEeccchHHHHhhcCC-----ceEEEEEEeC
Q 012579 415 FDEGQFSVFGYTTVGRDILPQIKTGD-----VIQSAKLIEG 450 (460)
Q Consensus 415 ~LDG~ytVFG~VveG~DVL~kI~~GD-----~I~sakVv~g 450 (460)
||||+|+|||+|++|||||++|+... ..+.|+|.+.
T Consensus 127 ~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~c 167 (170)
T 1qng_A 127 WLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDC 167 (170)
T ss_dssp GGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEE
T ss_pred ccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCCCeEEEec
Confidence 99999999999999999999999743 2445555544
No 20
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=1.2e-36 Score=279.81 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=120.4
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHHh--cCC-cCCceeeEeeCCcEEecCC-CCCCCCCCCccccCCCCCCCccCccccc
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLVI--DGA-YDGTRLNCTNQAVLTEKGL-DKGSDYNLPLEIMPSGQFEPLYRTALNV 365 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YDGt~FhRvv~~fviQgGd-~~~~G~~iPlEi~~~G~~~Piyg~~~ed 365 (460)
..|+|+|+||++.||+||+||++||+ .|| |||+.|||++++||+|||| +.+.|.. +.++|+.++++
T Consensus 15 ~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g----------g~si~g~~~~d 84 (164)
T 3pmp_A 15 PEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTG----------GKSIYGEKFAD 84 (164)
T ss_dssp EEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSC----------CCBTTBSCBCC
T ss_pred EeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCC----------CcccCCccccc
Confidence 47889999999999999999999999 899 9999999999999999999 4433321 34688888886
Q ss_pred cCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhc-----CC
Q 012579 366 QDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKT-----GD 440 (460)
Q Consensus 366 ~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~-----GD 440 (460)
|.+.++|+.+|+|||||.++ |+++|||||++.+ .++|||+|+|||+|++|||||++|+. |.
T Consensus 85 ---E~~~l~h~~~G~lsma~~g~---~t~~SQFfIt~~~--------~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~ 150 (164)
T 3pmp_A 85 ---ENFQVKHTKPGLLSMANAGA---NTNGSQFFITTVP--------TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGK 150 (164)
T ss_dssp ---CCCCSCCCSTTEEEECBSST---TCBCSCEEEESSC--------CGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCC
T ss_pred ---cccccCcCCCcEEEEeeCCC---CCcccEEEEECCC--------ChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCC
Confidence 67888999999999999986 6999999999987 89999999999999999999999996 44
Q ss_pred ceEEEEEEeCC
Q 012579 441 VIQSAKLIEGQ 451 (460)
Q Consensus 441 ~I~sakVv~g~ 451 (460)
.+..|+|.+..
T Consensus 151 P~~~v~I~~cg 161 (164)
T 3pmp_A 151 TNATIKITDCG 161 (164)
T ss_dssp CSSCEEEEEEE
T ss_pred cccCEEEEeCe
Confidence 56677777654
No 21
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=1.4e-36 Score=283.33 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=126.3
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh-----------cCCcCCceeeEeeCCcEE
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI-----------DGAYDGTRLNCTNQAVLT 333 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~-----------~GfYDGt~FhRvv~~fvi 333 (460)
+..|.|.+..+. ...|+|+|+||++.||+||+||++||+ .+||||+.||||+++||+
T Consensus 9 ~~~vf~di~i~~------------t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~i 76 (179)
T 2wfi_A 9 RPRCFFDIAINN------------QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMV 76 (179)
T ss_dssp CCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEE
T ss_pred CCeEEEEEEECC------------ccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEE
Confidence 445677766654 257899999999999999999999996 679999999999999999
Q ss_pred ecCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCC
Q 012579 334 EKGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGG 412 (460)
Q Consensus 334 QgGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g 412 (460)
||||+. +.|.. +.++|+.+|++ |...++|+.+|+|||||.++ ||++|||||++.+
T Consensus 77 QgGd~~~~~g~g----------g~si~g~~f~d---E~~~~~h~~~G~lsMAn~gp---~tngSQFfIt~~~-------- 132 (179)
T 2wfi_A 77 QGGDFSEGNGRG----------GESIYGGFFED---ESFAVKHNKEFLLSMANRGK---DTNGSQFFITTKP-------- 132 (179)
T ss_dssp EECCTTTSSSSC----------CCCTTSSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------
T ss_pred EcccccCCCCCC----------CCcccCCcccc---cccCcCcCCCeEEEEEeCCC---CCcceEEEEEcCC--------
Confidence 999975 33321 34688888886 66788899999999999986 7999999999987
Q ss_pred CCCCCCCccEEEEEeccchHHHHhhcCC------ceEEEEEEeCC
Q 012579 413 LSFDEGQFSVFGYTTVGRDILPQIKTGD------VIQSAKLIEGQ 451 (460)
Q Consensus 413 ~~~LDG~ytVFG~VveG~DVL~kI~~GD------~I~sakVv~g~ 451 (460)
.+||||+|+|||+|++|||||++|+... ..+.|+|.+..
T Consensus 133 ~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~G 177 (179)
T 2wfi_A 133 TPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177 (179)
T ss_dssp CGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEEE
T ss_pred CcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeCe
Confidence 8899999999999999999999999742 24556666543
No 22
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=1e-36 Score=285.95 Aligned_cols=153 Identities=21% Similarity=0.261 Sum_probs=127.7
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh--cCC--------cCCceeeEeeCCcE
Q 012579 263 TGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI--DGA--------YDGTRLNCTNQAVL 332 (460)
Q Consensus 263 ~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf--------YDGt~FhRvv~~fv 332 (460)
..+..|.|.++.+. ...|+|+|+||++.||+||+||++||+ +|| |||+.||||+++||
T Consensus 17 ~~~~~v~~di~i~~------------t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~ 84 (186)
T 2poy_A 17 QGNPVVYFDISIGQ------------TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFM 84 (186)
T ss_dssp -CCCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTE
T ss_pred CCCCEEEEEEeECC------------EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCE
Confidence 45667888888764 257899999999999999999999995 699 99999999999999
Q ss_pred EecCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCC
Q 012579 333 TEKGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLG 411 (460)
Q Consensus 333 iQgGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~ 411 (460)
+||||+. +.|.. +.++|+.+|++ |.+.++|+.+|+|||||.++ ||++|||||++.+
T Consensus 85 iQgGd~~~~~G~g----------g~si~g~~f~d---E~~~l~h~~~G~lsMAn~gp---ntngSQFFIt~~~------- 141 (186)
T 2poy_A 85 IQGGDFTRGDGTG----------GESIYGSKFRD---ENFVYTHDAPFLLSMANAGP---NTNGSQFFITTVP------- 141 (186)
T ss_dssp EEECCTTTSSSSC----------CCCTTC-CBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC-------
T ss_pred EEeCCCCCCCCCC----------CCccCCCcccC---cccccccCCCcEEEEeeCCC---CCcccEEEEECCC-------
Confidence 9999975 33321 34688888886 67788899999999999885 6999999999987
Q ss_pred CCCCCCCCccEEEEEeccchHHHHhhcCC-----ceEEEEEEeCC
Q 012579 412 GLSFDEGQFSVFGYTTVGRDILPQIKTGD-----VIQSAKLIEGQ 451 (460)
Q Consensus 412 g~~~LDG~ytVFG~VveG~DVL~kI~~GD-----~I~sakVv~g~ 451 (460)
.++|||+|+|||+|++|||||++|+... ..+.|+|.++.
T Consensus 142 -~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~~v~I~~cG 185 (186)
T 2poy_A 142 -CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185 (186)
T ss_dssp -CGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEEE
T ss_pred -CcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEeCC
Confidence 8999999999999999999999998732 34556666543
No 23
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=1.4e-36 Score=281.85 Aligned_cols=136 Identities=22% Similarity=0.285 Sum_probs=117.0
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHH--hcCC-cCCceeeEeeCCcEEecCC-CCCCCCCCCccccCCCCCCCccCccccc
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLV--IDGA-YDGTRLNCTNQAVLTEKGL-DKGSDYNLPLEIMPSGQFEPLYRTALNV 365 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv--~~Gf-YDGt~FhRvv~~fviQgGd-~~~~G~~iPlEi~~~G~~~Piyg~~~ed 365 (460)
..|+|+|+||++.||+||+||++|| ++|| |||+.||||+++||+|||| +.++|.. +.++|+.+|++
T Consensus 24 ~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g----------g~si~g~~f~d 93 (172)
T 2haq_A 24 PLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTG----------GKSIYGEKFAD 93 (172)
T ss_dssp EEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSC----------CCCSSSSCBCC
T ss_pred ecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCC----------CccccCCcccC
Confidence 5789999999999999999999999 7999 9999999999999999999 4443322 34689988886
Q ss_pred cCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCC-----
Q 012579 366 QDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGD----- 440 (460)
Q Consensus 366 ~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD----- 440 (460)
|.+.++|. +|+|||||.++ ||++|||||++.+ .++|||+|+|||+|++|||||++|+...
T Consensus 94 ---E~~~l~h~-~G~lsmAn~gp---~tngSQFfIt~~~--------~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~ 158 (172)
T 2haq_A 94 ---ENLNVKHF-VGALSMANAGP---NTNGSQFFITTAP--------TPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD 158 (172)
T ss_dssp ---CCCCSCCC-TTEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred ---cCCCcccC-ceEEEEccCCC---CCcccEEEEECCC--------CCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence 67788888 99999999985 6999999999987 8899999999999999999999999742
Q ss_pred -ceEEEEEEeC
Q 012579 441 -VIQSAKLIEG 450 (460)
Q Consensus 441 -~I~sakVv~g 450 (460)
.++.++|.+.
T Consensus 159 ~P~~~v~I~~~ 169 (172)
T 2haq_A 159 RPVKPVKIVAS 169 (172)
T ss_dssp CBSSCEEEEEE
T ss_pred cCCCCeEEEEe
Confidence 2445666543
No 24
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=1.3e-36 Score=286.27 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=117.0
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHH---------------hcCCcCCceeeEee
Q 012579 264 GRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLV---------------IDGAYDGTRLNCTN 328 (460)
Q Consensus 264 GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv---------------~~GfYDGt~FhRvv 328 (460)
...+|.|+|+.|+ |+|+||++.||+||+||++|| +.+||||+.||||+
T Consensus 22 ~~~~v~l~t~~G~-----------------I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi 84 (191)
T 1w74_A 22 ATATATLHTNRGD-----------------IKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVI 84 (191)
T ss_dssp CSEEEEEEETTEE-----------------EEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEE
T ss_pred CCeEEEEEeccee-----------------EEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEe
Confidence 3567999999876 999999999999999999999 46899999999999
Q ss_pred CCcEEecCCCCCCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccC
Q 012579 329 QAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNA 408 (460)
Q Consensus 329 ~~fviQgGd~~~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~ 408 (460)
++||+||||+.++|... |+.+|++ +..+.++|+.+|+|||||.++ ||++|||||++.+
T Consensus 85 ~~fmiQgGd~~g~G~gg-------------~g~~f~d--E~~~~l~h~~~G~lsMAn~gp---ntngSQFFIt~~~---- 142 (191)
T 1w74_A 85 QGFMIQGGDPTGTGRGG-------------PGYKFAD--EFHPELQFDKPYLLAMANAGP---GTNGSQFFITVGK---- 142 (191)
T ss_dssp TTTEEEECCTTSSSSCC-------------SSCCBCC--CCCTTCCSCSSSEEEECCSST---TCBSSCEEEESSC----
T ss_pred CCCEEecCCCCCCCCCC-------------CCCcccc--ccccCCCcCCCcEEEEeeCCC---CCccceEEEEcCC----
Confidence 99999999987655321 5666765 235788899999999999985 7999999999987
Q ss_pred CCCCCCCCCCCccEEEEEec--cchHHHHhhcC
Q 012579 409 GLGGLSFDEGQFSVFGYTTV--GRDILPQIKTG 439 (460)
Q Consensus 409 ~p~g~~~LDG~ytVFG~Vve--G~DVL~kI~~G 439 (460)
.+||||+|+|||+|++ |||||++|+..
T Consensus 143 ----~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~ 171 (191)
T 1w74_A 143 ----TPHLNRRHTIFGEVIDAESQRVVEAISKT 171 (191)
T ss_dssp ----CGGGTTTSCEEEEECSHHHHHHHHHHHTS
T ss_pred ----CcccCCCeeEEEEEEECCCHHHHHHHHcC
Confidence 8999999999999999 99999999974
No 25
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=282.61 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=128.1
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhc--CC-cCCceeeEeeCCcEEecCCCC
Q 012579 263 TGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVID--GA-YDGTRLNCTNQAVLTEKGLDK 339 (460)
Q Consensus 263 ~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--Gf-YDGt~FhRvv~~fviQgGd~~ 339 (460)
..+..|.|+|+.+. ...|+|+|+||++.||+||+||++||+. || |||+.||||+++||+||||..
T Consensus 20 ~~~p~v~~di~i~~------------~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~ 87 (184)
T 3rdd_A 20 MVNPTVFFDIAVDG------------EPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT 87 (184)
T ss_dssp -CCCEEEEEEEETT------------EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTT
T ss_pred CCCCEEEEEEeECC------------EeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCC
Confidence 45667899998765 2578899999999999999999999964 56 999999999999999999953
Q ss_pred -CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCC
Q 012579 340 -GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEG 418 (460)
Q Consensus 340 -~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG 418 (460)
+.|.. +.++|+.++++ |.+.++|+.+|+|||||.++ |+++|||||++.+ .++|||
T Consensus 88 ~~~g~g----------g~si~g~~~~d---e~~~l~h~~~G~lsmA~~gp---~s~gSQFfIt~~~--------~~~LDg 143 (184)
T 3rdd_A 88 RHNGTG----------GKSIYGEKFED---ENFILKHTGPGILSMANAGP---NTNGSQFFICTAK--------TEWLDG 143 (184)
T ss_dssp TSSSSC----------CCBTTBSCBCC---CCCCSCCCSTTEEEECCSST---TCBSSCEEEESSC--------CGGGTT
T ss_pred CCCCCC----------CcccCCCcccC---cccccccCCCcEEEEEeCCC---CCcccEEEEEeCC--------chhhCC
Confidence 33321 34678888876 67788899999999999885 6999999999988 789999
Q ss_pred CccEEEEEeccchHHHHhhc-----CCceEEEEEEeCC
Q 012579 419 QFSVFGYTTVGRDILPQIKT-----GDVIQSAKLIEGQ 451 (460)
Q Consensus 419 ~ytVFG~VveG~DVL~kI~~-----GD~I~sakVv~g~ 451 (460)
+|+|||+|++|||||++|+. |.....|+|.+..
T Consensus 144 ~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~~~v~I~~cG 181 (184)
T 3rdd_A 144 KHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCG 181 (184)
T ss_dssp TSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEE
T ss_pred CceEEEEEecCHHHHHHHHhcCCCCCCCcCCeEEEeCe
Confidence 99999999999999999987 2345667776654
No 26
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=281.61 Aligned_cols=151 Identities=20% Similarity=0.204 Sum_probs=125.5
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh-----------cCCcCCceeeEeeCCcE
Q 012579 264 GRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI-----------DGAYDGTRLNCTNQAVL 332 (460)
Q Consensus 264 GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~-----------~GfYDGt~FhRvv~~fv 332 (460)
.+..|.|.+..+. ...|+|+|+||++.||+||+||++||+ .+||||+.||||+++||
T Consensus 18 ~~~~vf~di~i~~------------t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fm 85 (192)
T 2he9_A 18 GSPQCHFDIEINR------------EPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFM 85 (192)
T ss_dssp -CCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTE
T ss_pred CCCeEEEEEEECC------------EecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCE
Confidence 3446777776654 257899999999999999999999995 68999999999999999
Q ss_pred EecCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCC
Q 012579 333 TEKGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLG 411 (460)
Q Consensus 333 iQgGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~ 411 (460)
+||||+. ++|.. +.++|+.+|++ |...++|+.+|+|||||.++ ||++|||||++.+
T Consensus 86 iQgGd~~~~~G~g----------g~siyg~~f~d---E~~~l~h~~~G~lsMAn~gp---~tngSQFFIt~~~------- 142 (192)
T 2he9_A 86 IQGGDFSEGNGKG----------GESIYGGYFKD---ENFILKHDRAFLLSMANRGK---HTNGSQFFITTKP------- 142 (192)
T ss_dssp EEECCTTTSSSSC----------CCCTTSSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC-------
T ss_pred EEcCcccCCCCCC----------CCcccCCcccC---ccccCCCCCCeEEEEEeCCC---CCcceEEEEEcCC-------
Confidence 9999975 33322 35789988886 67788899999999999985 7999999999987
Q ss_pred CCCCCCCCccEEEEEeccchHHHHhhcC-----C-ceEEEEEEeC
Q 012579 412 GLSFDEGQFSVFGYTTVGRDILPQIKTG-----D-VIQSAKLIEG 450 (460)
Q Consensus 412 g~~~LDG~ytVFG~VveG~DVL~kI~~G-----D-~I~sakVv~g 450 (460)
.+||||+|+|||+|++|||||++|+.. | .++.|+|.+.
T Consensus 143 -~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~ 186 (192)
T 2he9_A 143 -APHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDC 186 (192)
T ss_dssp -CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEE
T ss_pred -CcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEe
Confidence 889999999999999999999999973 2 2445555544
No 27
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=1.8e-36 Score=278.61 Aligned_cols=130 Identities=24% Similarity=0.266 Sum_probs=110.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP 346 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP 346 (460)
.|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.. +.
T Consensus 1 ~v~l~T~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~-~~--- 59 (164)
T 1lop_A 1 MVTFHTNHGD-----------------IVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GM--- 59 (164)
T ss_dssp CEEEEETTEE-----------------EEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEET-TT---
T ss_pred CEEEEeCCCC-----------------EEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCccc-CC---
Confidence 3788998876 99999999999999999999999999999999999999999999752 11
Q ss_pred ccccCCCCCCCccCccccccCCCC-CCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCC------
Q 012579 347 LEIMPSGQFEPLYRTALNVQDGEL-PVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQ------ 419 (460)
Q Consensus 347 lEi~~~G~~~Piyg~~~ed~~~e~-p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~------ 419 (460)
+..+|+.+|++ |. +.+ +|.+|+|||||...+ ||++|||||++.+ .+||||+
T Consensus 60 --------g~~~~g~~~~d---E~~~~l-~~~~G~lsmA~~~~p--~s~gSQFfI~~~~--------~~~Ld~~~~~~~~ 117 (164)
T 1lop_A 60 --------KQKATKEPIKN---EANNGL-KNTRGTLAMARTQAP--HSATAQFFINVVD--------NDFLNFSGESLQG 117 (164)
T ss_dssp --------EECCCCCCBCC---CCCSSC-CCCTTEEEECCCSST--TCBCSCEEEESSC--------CGGGSCCSSSTTT
T ss_pred --------CcCCCCCcccc---cccccc-ccCccEEEEeecCCC--CCccceEEEEcCC--------ccccCCccccccC
Confidence 12356667765 43 345 457999999986433 6999999999988 7889987
Q ss_pred --ccEEEEEeccchHHHHhhcC
Q 012579 420 --FSVFGYTTVGRDILPQIKTG 439 (460)
Q Consensus 420 --ytVFG~VveG~DVL~kI~~G 439 (460)
|+|||+|++|||||++|+..
T Consensus 118 ~~~tvFG~Vv~G~dvv~~I~~~ 139 (164)
T 1lop_A 118 WGYCVFAEVVDGMDEVDKIKGV 139 (164)
T ss_dssp SCCCEEEEEEECHHHHHHHHTS
T ss_pred CceEEEEEEecCHHHHHHHHhC
Confidence 99999999999999999873
No 28
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=280.30 Aligned_cols=143 Identities=24% Similarity=0.324 Sum_probs=122.0
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCC
Q 012579 266 GIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNL 345 (460)
Q Consensus 266 atV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~i 345 (460)
..|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.|..
T Consensus 25 ~~V~l~T~~G~-----------------I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~g- 86 (185)
T 2hq6_A 25 GKVLLKTTAGD-----------------IDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG- 86 (185)
T ss_dssp CEEEEEETTEE-----------------EEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSC-
T ss_pred CEEEEEeCCcc-----------------EEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCC-
Confidence 35899998876 999999999999999999999999999999999999999999998755432
Q ss_pred CccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEE
Q 012579 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGY 425 (460)
Q Consensus 346 PlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~ 425 (460)
+.++|+.+|++ +..+.++|+.+|+|||||.++ ||++|||||++.+ .++|||+|+|||+
T Consensus 87 ---------g~si~g~~~~d--E~~~~l~h~~~G~lsMA~~g~---~s~gSQFFIt~~~--------~~~LDg~~tVFG~ 144 (185)
T 2hq6_A 87 ---------GESIYGAPFKD--EFHSRLRFNRRGLVAMANAGS---HDNGSQFFFTLGR--------ADELNNKHTIFGK 144 (185)
T ss_dssp ---------CCCTTSSCBCC--CCBTTBCSCSSSEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSCEEEE
T ss_pred ---------CCcccCCcccc--ccccCcccCCCeEEEEccCCC---CCccceEEEECCC--------CCccCCCceEEEE
Confidence 34688888876 233578899999999999986 6999999999987 8899999999999
Q ss_pred EeccchHH--HHhhcC-----C------ceEEEEEEe
Q 012579 426 TTVGRDIL--PQIKTG-----D------VIQSAKLIE 449 (460)
Q Consensus 426 VveG~DVL--~kI~~G-----D------~I~sakVv~ 449 (460)
|+ |++|+ ++|+.. | +|.++.|+.
T Consensus 145 V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~~ 180 (185)
T 2hq6_A 145 VT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLF 180 (185)
T ss_dssp EC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEEE
T ss_pred EE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEeC
Confidence 99 89875 567642 1 577777764
No 29
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=2.2e-36 Score=278.43 Aligned_cols=131 Identities=29% Similarity=0.347 Sum_probs=109.1
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCC
Q 012579 266 GIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNL 345 (460)
Q Consensus 266 atV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~i 345 (460)
..|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.+.
T Consensus 4 ~~v~l~T~~G~-----------------i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~-- 64 (167)
T 3s6m_A 4 SMVELHTNHGV-----------------IKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLK-- 64 (167)
T ss_dssp CEEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTTE--
T ss_pred cEEEEEeCCce-----------------EEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCCC--
Confidence 36999999887 99999999999999999999999999999999999999999999764221
Q ss_pred CccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCC------
Q 012579 346 PLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQ------ 419 (460)
Q Consensus 346 PlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~------ 419 (460)
...++.++++ +..+.+ +|.+|+|||||.+.+ ||++|||||++.+ .++||++
T Consensus 65 ----------~~~~~~~~~~--E~~~~l-~~~~G~lsmA~~~~p--~t~gSQFfI~~~~--------~~~Ld~~~~~~~~ 121 (167)
T 3s6m_A 65 ----------QKPTDAPIAN--EANNGL-KNDTYTIAMARTNDP--HSATAQFFINVND--------NEFLNHSSPTPQG 121 (167)
T ss_dssp ----------ECCCCCCBCC--CGGGCC-CCCTTEEEECCCSST--TCBCSCEEEESSC--------CGGGSCCSSSTTT
T ss_pred ----------CCCCCCccCC--cccccc-cCCccEEEEecCCCC--CCccceEEEEcCC--------chhcCCcccccCC
Confidence 1123444443 122334 468999999995433 6999999999988 7889988
Q ss_pred --ccEEEEEeccchHHHHhhc
Q 012579 420 --FSVFGYTTVGRDILPQIKT 438 (460)
Q Consensus 420 --ytVFG~VveG~DVL~kI~~ 438 (460)
|+|||+|++|||||++|+.
T Consensus 122 ~~~~VFG~Vv~G~dvv~~I~~ 142 (167)
T 3s6m_A 122 WGYAVFGKVVEGQDIVDKIKA 142 (167)
T ss_dssp CCCCEEEEEEECHHHHHHHTT
T ss_pred CCceEEEEEEcCHHHHHHHHc
Confidence 9999999999999999987
No 30
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.1e-35 Score=280.32 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=127.4
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh--cCC-cCCceeeEeeCCcEEecCCCC-
Q 012579 264 GRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI--DGA-YDGTRLNCTNQAVLTEKGLDK- 339 (460)
Q Consensus 264 GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YDGt~FhRvv~~fviQgGd~~- 339 (460)
.+..|.|.++.+. ...|+|+|+||++.||+||+||++||+ .|| |||+.||||+++||+||||..
T Consensus 26 ~~p~v~~di~i~~------------t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~ 93 (193)
T 3k2c_A 26 ASGNVYFDVYANE------------ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTA 93 (193)
T ss_dssp CTTCEEEEEEETT------------EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTT
T ss_pred CCCEEEEEEeECC------------EEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCC
Confidence 4445777776654 246889999999999999999999998 888 999999999999999999943
Q ss_pred CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCC
Q 012579 340 GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQ 419 (460)
Q Consensus 340 ~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ 419 (460)
+.|.. +.++|+.+|++ |.+.++|+.+|+|||||.++ |+++|||||++.+ .++|||+
T Consensus 94 ~~g~g----------g~si~g~~f~d---E~~~l~h~~~G~lsmAn~gp---~t~gSQFFIt~~~--------~~~LDg~ 149 (193)
T 3k2c_A 94 HNGTG----------GRSIYGEKFPD---ENFELKHTKEGILSMANCGA---HTNGSQFFITLGK--------TQWLDEK 149 (193)
T ss_dssp SSSSC----------CCCTTSSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------CGGGTTT
T ss_pred CCCcC----------CcccCCCcccc---cccccccCCCcEEEEEeCCC---CCCccEEEEECCC--------CcccCCC
Confidence 33321 34678888876 67888899999999999986 6999999999988 8899999
Q ss_pred ccEEEEEeccchHHHHhhcC-----Cce--EEEEEEeCC
Q 012579 420 FSVFGYTTVGRDILPQIKTG-----DVI--QSAKLIEGQ 451 (460)
Q Consensus 420 ytVFG~VveG~DVL~kI~~G-----D~I--~sakVv~g~ 451 (460)
|+|||+|++|||||++|+.. ... ..|+|.++.
T Consensus 150 ~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v~I~~cG 188 (193)
T 3k2c_A 150 HVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188 (193)
T ss_dssp SCEEEEEEECHHHHHHHHTTCCTTCCCCTTCCEEEEEEE
T ss_pred ccEEEEEeCCHHHHHHHHhcCCCCCcCccCccEEEEEce
Confidence 99999999999999999872 234 677777755
No 31
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=1.6e-35 Score=277.21 Aligned_cols=141 Identities=22% Similarity=0.322 Sum_probs=119.6
Q ss_pred CCcCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhc--C-CcCCceeeEeeCCcEEecC
Q 012579 260 PRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVID--G-AYDGTRLNCTNQAVLTEKG 336 (460)
Q Consensus 260 P~L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--G-fYDGt~FhRvv~~fviQgG 336 (460)
|.++.+ |.|.++.++ ...|+|+|+||++.||+||+||++||+. | ||||+.|||++++||+|||
T Consensus 9 p~~~~~--v~~di~i~~------------~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgG 74 (185)
T 4fru_A 9 PKVTVK--VYFDLRIGD------------EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGG 74 (185)
T ss_dssp EEEEEE--EEEEEEETT------------EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEEC
T ss_pred CCcCcE--EEEEEEECC------------EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEEC
Confidence 555555 555555543 2578899999999999999999999965 7 7999999999999999999
Q ss_pred CCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCC
Q 012579 337 LDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSF 415 (460)
Q Consensus 337 d~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~ 415 (460)
|+. +.|.. +.++|+.+|++ |...++|+.+|+|||||.++ |+++|||||++.+ .+|
T Consensus 75 d~~~~~g~g----------g~si~g~~f~d---e~~~~~h~~~G~lsma~~gp---~t~~SQFfI~~~~--------~~~ 130 (185)
T 4fru_A 75 DFTRGDGTG----------GKSIYGERFPD---ENFKLKHYGPGWVSMANAGK---DTNGSQFFITTVK--------TAW 130 (185)
T ss_dssp CTTTSSSSC----------CCBTTBSCBCC---CCCCSCCCSTTEEEECCSST---TCBCSCEEEESSC--------CGG
T ss_pred CCCCCCCCC----------CccccCCccCc---cccccCcCCCeEEEEeeCCC---CCcceEEEEEeCC--------Ccc
Confidence 975 33321 34678888876 67788899999999999985 6999999999987 899
Q ss_pred CCCCccEEEEEeccchHHHHhhc
Q 012579 416 DEGQFSVFGYTTVGRDILPQIKT 438 (460)
Q Consensus 416 LDG~ytVFG~VveG~DVL~kI~~ 438 (460)
|||+|+|||+|++|||||++|+.
T Consensus 131 Ld~~~~vFG~Vv~G~dvv~~I~~ 153 (185)
T 4fru_A 131 LDGKHVVFGKVLEGMEVVRKVET 153 (185)
T ss_dssp GTTTSCEEEEEEECHHHHHHHHT
T ss_pred cCCCccEEEEEeCCHHHHHHHHh
Confidence 99999999999999999999997
No 32
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=2e-35 Score=285.70 Aligned_cols=157 Identities=22% Similarity=0.265 Sum_probs=128.2
Q ss_pred ccccCCCcCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEe
Q 012579 255 QYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTE 334 (460)
Q Consensus 255 ey~~lP~L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQ 334 (460)
.|...|..++ .|.|+|+.|+ |+|+||++.||+||+||++||+.|||||+.||||+++||+|
T Consensus 13 ~~~~~p~~~~--~V~l~T~~G~-----------------I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQ 73 (232)
T 3bkp_A 13 NLYFQGSTRG--KVVLHTSLGD-----------------LDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQ 73 (232)
T ss_dssp GGGCCCSCBC--EEEEEETTEE-----------------EEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEE
T ss_pred cccccCCCCC--EEEEEECCCc-----------------EEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEE
Confidence 3555565544 5899999876 99999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccCCCCCCCcc--CccccccCCCCCCccCCcCceEEEeccCCCC-----------CCCCCceEEEE
Q 012579 335 KGLDKGSDYNLPLEIMPSGQFEPLY--RTALNVQDGELPVLPLSVYGAVAMAHSEDSE-----------EYSAPYQFFFY 401 (460)
Q Consensus 335 gGd~~~~G~~iPlEi~~~G~~~Piy--g~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~-----------~nS~gSQFFIt 401 (460)
|||+.++|.. +.++| +.+|++ +..+.++|+.+|+|||||.++++ .||++|||||+
T Consensus 74 gGdp~~~G~G----------g~si~~~g~~f~d--E~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt 141 (232)
T 3bkp_A 74 GGDPTGTGRG----------GADTTFDGKPFDV--ETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFIT 141 (232)
T ss_dssp ECCTTSSSSC----------CCCCTTTTCCBCC--CCCTTCCCCSTTEEEECCCC----------------CBCSCEEEE
T ss_pred cCCCCCCCCC----------CCccccCCCccCC--ccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEE
Confidence 9998765532 24577 777775 23467889999999999998630 04999999999
Q ss_pred ecCCccCCCCCCCCCCCCccEEEEEeccchH--HHHhhcC-----------CceEEEEEEeCC
Q 012579 402 LYDKRNAGLGGLSFDEGQFSVFGYTTVGRDI--LPQIKTG-----------DVIQSAKLIEGQ 451 (460)
Q Consensus 402 l~d~~~~~p~g~~~LDG~ytVFG~VveG~DV--L~kI~~G-----------D~I~sakVv~g~ 451 (460)
+.+ .++|||+|+|||+|+ |++| |++|+.. .+|.++.|+..-
T Consensus 142 ~~~--------~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dP 195 (232)
T 3bkp_A 142 LAR--------ADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNP 195 (232)
T ss_dssp SSC--------CGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECC
T ss_pred CCC--------CcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCC
Confidence 987 899999999999999 7776 8899762 168999998743
No 33
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=9.9e-37 Score=282.65 Aligned_cols=125 Identities=21% Similarity=0.241 Sum_probs=91.5
Q ss_pred cceEEEEEEeCCCChHHHHHHHHHHh--cCC-cCCceeeEeeCCcEEecCC-CCCCCCCCCccccCCCCCCCccCccccc
Q 012579 290 KTATIQVVLDGYSAPLTAGNVAKLVI--DGA-YDGTRLNCTNQAVLTEKGL-DKGSDYNLPLEIMPSGQFEPLYRTALNV 365 (460)
Q Consensus 290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~--~Gf-YDGt~FhRvv~~fviQgGd-~~~~G~~iPlEi~~~G~~~Piyg~~~ed 365 (460)
..|+|+|+||++.||+||+||++||+ +|| |||+.||||+++||+|||| +.+.|.. +.++|+.+|++
T Consensus 20 ~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g----------g~si~g~~f~d 89 (172)
T 2c3b_A 20 KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTG----------GRSIYGDKFAD 89 (172)
T ss_dssp EEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------------
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCC----------CcccCCCcccC
Confidence 45999999999999999999999999 889 9999999999999999999 5544432 24688888876
Q ss_pred cCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEec--cchHHHHhhc
Q 012579 366 QDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTV--GRDILPQIKT 438 (460)
Q Consensus 366 ~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~Vve--G~DVL~kI~~ 438 (460)
|.+.++|+.+|+|||||.++ |+++|||||++.+ .+||||+|+|||+|++ |||||++|+.
T Consensus 90 ---E~~~~~h~~~G~lsmA~~gp---~t~gSQFfIt~~~--------~~~LDg~~tvFG~Vv~~~G~dvv~~I~~ 150 (172)
T 2c3b_A 90 ---ENFSRKHDKKGILSMANAGP---NTNGSQFFITTAV--------TSWLDGKHVVFGEVADEKSYSVVKEIEA 150 (172)
T ss_dssp ------CHHHHHTCEEEEC------------CEEEECSC--------CTTCCSCCEEEEEECSHHHHHHHHHHHT
T ss_pred ---cccccccCCCeEEEEeeCCC---CCcccEEEEECCC--------CCccCCCeeEEEEEEecCCHHHHHHHHh
Confidence 67888899999999999975 6999999999988 8999999999999999 9999999997
No 34
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=2.1e-35 Score=285.91 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=120.9
Q ss_pred cCCCcCCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHh-------------c----C--C
Q 012579 258 KYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVI-------------D----G--A 318 (460)
Q Consensus 258 ~lP~L~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~-------------~----G--f 318 (460)
++|....+..|.|.+..+. ...|+|+|+||++.||+||+||++||+ . | |
T Consensus 7 ~~p~~~~~p~v~~di~i~~------------t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~ 74 (234)
T 2ose_A 7 DLPNSGKNPRVYMDIVLNN------------EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74 (234)
T ss_dssp SCCCCCSSCEEEEEEEETT------------EEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CC
T ss_pred ccCcCCCCCEEEEEEEECC------------cccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCce
Confidence 5777778888888876653 146779999999999999999999998 3 5 8
Q ss_pred -cCCceeeEeeCCcEEecCCC-CCCCCCCCccccCCCCCCCccCcc-----ccccCCCCCCccCCcCceEEEec----cC
Q 012579 319 -YDGTRLNCTNQAVLTEKGLD-KGSDYNLPLEIMPSGQFEPLYRTA-----LNVQDGELPVLPLSVYGAVAMAH----SE 387 (460)
Q Consensus 319 -YDGt~FhRvv~~fviQgGd~-~~~G~~iPlEi~~~G~~~Piyg~~-----~ed~~~e~p~Lp~~~~GtLAMAr----~~ 387 (460)
|||+.||||+++|||||||. .+.|.. +.++|+.+ |+ .+.++|+.+|+||||| .+
T Consensus 75 ~Y~gt~FHRVi~~FmiQgGd~~~g~G~G----------g~siyg~~~~p~~f~-----~~~l~h~~~G~lsMAn~~~~~g 139 (234)
T 2ose_A 75 TYEGCKFHNVLHNNYIVSGDIYNSNGSS----------AGTVYCDEPIPPVFG-----DYFYPHESKGLLSLVPYTDESG 139 (234)
T ss_dssp CSTTCBCCEEETTTEEEECCCC----CC----------CCCTTTTCCBCCCCC-----SCCCCSCSTTEEEECCEECTTS
T ss_pred EECCcEEEEEECCCEEEcCCccCCCCCC----------CccccCCccCccccc-----CcCccCCCCCEEEEecccccCC
Confidence 99999999999999999994 444432 23567765 43 3468888999999999 66
Q ss_pred CCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhc
Q 012579 388 DSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKT 438 (460)
Q Consensus 388 ~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~ 438 (460)
+ ||+||||||++.+.+. .+|.+||||+|+|||+|++|||||++|+.
T Consensus 140 p---ntngSQFFIt~~~~~~--~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~ 185 (234)
T 2ose_A 140 N---RYYDSTFMITLDDIRP--SNVLDELDRDQVVIGQVYGGLDVLDKINS 185 (234)
T ss_dssp C---EEBCSCEEEESSCCCT--TSSGGGSCTTSEEEEEEEECHHHHHHHHH
T ss_pred C---CCccceEEEEecCccc--cCCCcccCCCeeEEEEEeCCHHHHHHHHh
Confidence 4 6999999999988543 26789999999999999999999999987
No 35
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=4.1e-35 Score=283.04 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=129.1
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcC--------CcCCceeeEeeCCcEEe
Q 012579 263 TGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDG--------AYDGTRLNCTNQAVLTE 334 (460)
Q Consensus 263 ~GratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~G--------fYDGt~FhRvv~~fviQ 334 (460)
..+..|.|+|+.+. ...|+|+|+||++.||+||+||++||+.+ ||||+.||||+++||+|
T Consensus 57 ~~~~~V~~disi~~------------t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQ 124 (229)
T 1z81_A 57 PSNPVVFMDINLGN------------NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQ 124 (229)
T ss_dssp TTCCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEE
T ss_pred CCCcEEEEEEeECC------------eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEE
Confidence 35668999998764 24788999999999999999999999987 79999999999999999
Q ss_pred cCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCC
Q 012579 335 KGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGL 413 (460)
Q Consensus 335 gGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~ 413 (460)
|||+. +.|.. +.++|+.+|++ |.+.++|+.+|+|||||.++ ||++|||||++.+ .
T Consensus 125 gGD~~~g~G~G----------g~siyg~~f~d---E~~~l~h~~~G~LsMAn~gp---ntngSQFFIt~~~--------~ 180 (229)
T 1z81_A 125 GGDFINHNGSG----------SLSIYGEKFDD---ENFDIKHDKEGLLSMANSGP---NTNGCQFFITTKK--------C 180 (229)
T ss_dssp ECCTTTSSSCC----------CCBTTBSCCCC---CCCCSCCCSTTEEEECCSSS---SCCCSCEEEESSC--------C
T ss_pred cCCCcCCCCCC----------CCccCCCcccc---cccccccCCCcEEEeccCCC---CCcccEEEEECCC--------C
Confidence 99974 33322 24688888886 67788899999999999985 6999999999988 8
Q ss_pred CCCCCCccEEEEEe--ccchHHHHhhcC------Cc-eEEEEEEeCC
Q 012579 414 SFDEGQFSVFGYTT--VGRDILPQIKTG------DV-IQSAKLIEGQ 451 (460)
Q Consensus 414 ~~LDG~ytVFG~Vv--eG~DVL~kI~~G------D~-I~sakVv~g~ 451 (460)
++|||+|+|||+|+ +|||||++|+.. |+ .+.|+|.+..
T Consensus 181 ~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG 227 (229)
T 1z81_A 181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227 (229)
T ss_dssp GGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEE
T ss_pred cccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCe
Confidence 99999999999999 999999999873 22 3456666543
No 36
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=2.6e-34 Score=289.55 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=123.5
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhc--------C---CcCCceeeEeeCCcEE
Q 012579 265 RGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVID--------G---AYDGTRLNCTNQAVLT 333 (460)
Q Consensus 265 ratV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~--------G---fYDGt~FhRvv~~fvi 333 (460)
+..|.|.|+.|+ ...|+|+|+||++.||+||+||+.||+. | ||||+.||||+++|||
T Consensus 15 ~~~v~~~~~~~~------------~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~ 82 (370)
T 1ihg_A 15 NPRVFFDVDIGG------------ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMI 82 (370)
T ss_dssp SCEEEEEEEETT------------EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEE
T ss_pred CCeEEEEEEECC------------EecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEE
Confidence 567999999875 2579999999999999999999999987 6 7999999999999999
Q ss_pred ecCCCC-CCCCCCCccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCC
Q 012579 334 EKGLDK-GSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGG 412 (460)
Q Consensus 334 QgGd~~-~~G~~iPlEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g 412 (460)
||||+. +.|.+ +.++|+.+|++ |...++|+.+|+|||||.++ ||+|||||||+.+
T Consensus 83 q~Gd~~~~~g~g----------~~~~~~~~~~~---e~~~~~~~~~g~l~ma~~~~---~~~~sqffi~~~~-------- 138 (370)
T 1ihg_A 83 QGGDFSNQNGTG----------GESIYGEKFED---ENFHYKHDKEGLLSMANAGS---NTNGSQFFITTVP-------- 138 (370)
T ss_dssp EECCTTTSSSSC----------CCBTTBSCBCC---CCCCBCCCSTTEEEECCSST---TCBCSCEEEESSC--------
T ss_pred ECCCCCCCCCCC----------CCCCCCCCcCC---CcCCcCCCCCeEEEEeeCCC---CCCCceEEEeCCC--------
Confidence 999986 44432 35689988887 67788899999999999985 6999999999988
Q ss_pred CCCCCCCccEEEEEeccchHHHHhhcC
Q 012579 413 LSFDEGQFSVFGYTTVGRDILPQIKTG 439 (460)
Q Consensus 413 ~~~LDG~ytVFG~VveG~DVL~kI~~G 439 (460)
.+||||+|+|||+|++|+|||++|+..
T Consensus 139 ~~~ld~~~~vfG~v~~g~~v~~~i~~~ 165 (370)
T 1ihg_A 139 TPHLDGKHVVFGQVIKGMGVAKILENV 165 (370)
T ss_dssp CGGGTTTSCEEEEEEECHHHHHHHHTS
T ss_pred CcccCCCceEEEEEecCHHHHHHHHcC
Confidence 899999999999999999999999974
No 37
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=94.47 E-value=0.073 Score=48.21 Aligned_cols=124 Identities=15% Similarity=0.246 Sum_probs=85.2
Q ss_pred CCCcccccccCCCCC---CCCChhhHh-h--hcCCC---ChhHHHHHHh---HhhhhhccCCCCCCCCcchhhhHHHHHH
Q 012579 109 SVFPANAVLYSPDTK---VPRTGELAL-R--RAIPA---NANMKAIQAS---LEDISFLLRIPQRKPYGTMEGNVKKALK 176 (460)
Q Consensus 109 ~~~~~~a~l~~p~~~---~~~~~~a~L-R--~alP~---n~~ir~iQ~~---LE~i~~~Lr~~~~k~~~~~~~~v~~a~~ 176 (460)
+|||..+-| |.+. -+||-.--| | --+|. ...+-.|+.. |.++...+-. |.|.-+...++.-..
T Consensus 9 ~~~~~~~~~--~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k---~~W~~vrn~LR~~~~ 83 (149)
T 1vyk_A 9 PPPPLSGGL--PGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDR---KAWPSLQNDLRLRAS 83 (149)
T ss_dssp CCCCC----------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHT---TCHHHHHHHHHHHHH
T ss_pred CCCCCCCCC--CCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHhHH
Confidence 344455556 4433 344444444 2 24441 3444455544 5556666644 999999999999999
Q ss_pred HHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhHHhhHHHHHHH
Q 012579 177 IAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAEL 240 (460)
Q Consensus 177 ~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~~~L~~v~~l 240 (460)
-|..+=..|..++|+++|+.+..|.++| ...|+.|-.++..||..+.....++++..+.++
T Consensus 84 ~Lr~Dl~~li~slp~~~kk~l~~La~~L---f~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~v 144 (149)
T 1vyk_A 84 YLRYDLKTVISAKPKDEKKSLQELTSKL---FSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEV 144 (149)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999999999999998887766654
No 38
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=93.21 E-value=0.24 Score=43.94 Aligned_cols=94 Identities=6% Similarity=0.059 Sum_probs=74.6
Q ss_pred hhHHHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHhh
Q 012579 140 ANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIK 219 (460)
Q Consensus 140 ~~ir~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~ 219 (460)
++|.+.+++|+++...+-- |.|--+..-+..=+--|...-..|-.++++..|++|.++..+| .+.|+.|-++..
T Consensus 28 ~~i~~~r~Rl~eL~~lI~~---~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l---~~~L~~LD~AA~ 101 (130)
T 3zsu_A 28 RDIEKNAERFADLEVSVAK---GDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRAL---TDDFLKIDQGAD 101 (130)
T ss_dssp HHHHHHHTTHHHHHHHHHT---TCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh---cchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3455566667666666655 8898877777666666666777888999999999999999999 999999999999
Q ss_pred hcCCcchhhhHHhhHHHHHH
Q 012579 220 DQDPDKVSVGLASSLDTVAE 239 (460)
Q Consensus 220 ~kd~d~~~~~~~~~L~~v~~ 239 (460)
.||........++++.....
T Consensus 102 ~~n~~~a~k~Y~~a~adfda 121 (130)
T 3zsu_A 102 LDSVTVAQEGFREAEADFKA 121 (130)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 99999988888877655443
No 39
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=89.56 E-value=0.32 Score=43.28 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=68.0
Q ss_pred hhHHHHHHhHhh-hhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhhcCCccchhhHHHHHHHHhcchhhHHHHHHHh
Q 012579 140 ANMKAIQASLED-ISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCI 218 (460)
Q Consensus 140 ~~ir~iQ~~LE~-i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~ 218 (460)
++|.+.+++|++ +...+-- |.|.-+..-+..=+--|...-..|-.++.+..|++|.++..+| .+.|+.|-++.
T Consensus 30 ~~i~~ar~Rl~e~L~~lI~~---~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l---~~~L~~LD~AA 103 (133)
T 3ls0_A 30 NPIAVARDGMEKRLQGLIAD---QNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEV---FGHLERLDAAA 103 (133)
T ss_dssp HHHHHHHHHHHHTHHHHHHT---TCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhh---cchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHH---HHHHHHHHHHH
Confidence 456666667777 6655544 7787665544433333444445666778788888999999999 99999999999
Q ss_pred hhcCCcchhhhHHhhHHHHHH
Q 012579 219 KDQDPDKVSVGLASSLDTVAE 239 (460)
Q Consensus 219 ~~kd~d~~~~~~~~~L~~v~~ 239 (460)
..||........++++.....
T Consensus 104 ~~~n~~~a~k~Y~~a~adfda 124 (133)
T 3ls0_A 104 KDRNGSQAKIQYQEALADFDS 124 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHH
Confidence 999999988888887655543
No 40
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=88.09 E-value=1.3 Score=40.09 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q 012579 293 TIQVVLDGYSAPLTAGNVAKLV 314 (460)
Q Consensus 293 ~I~IeLd~~~AP~Ta~NFl~Lv 314 (460)
+++++|+...||+||..|+++-
T Consensus 40 ~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 40 ECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp EEEECCCTTSCHHHHHHHHHTC
T ss_pred EEEEEEcCCCCHHHHHHHHHhC
Confidence 4999999999999999999864
No 41
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=87.35 E-value=1.3 Score=41.40 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=27.1
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHH
Q 012579 267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLV 314 (460)
Q Consensus 267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv 314 (460)
.++++..+++ -+++.+|..+.||+||+.|.++-
T Consensus 23 ~i~itl~~~g---------------~~~~A~Lldd~APkTcaA~~~~L 55 (188)
T 3kop_A 23 YINITLEKRG---------------VTCKALLLDDVAPRTSKAVWDAL 55 (188)
T ss_dssp EEEEEETTTT---------------EEEEEEECTTTSHHHHHHHHHHC
T ss_pred EEEEEEecCC---------------eEEEEEEccccChHHHHHHHHhC
Confidence 5778887775 13789999999999999999964
No 42
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=40.69 E-value=50 Score=29.08 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=34.3
Q ss_pred cCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHhhcCCce
Q 012579 377 VYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVI 442 (460)
Q Consensus 377 ~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI~~GD~I 442 (460)
..|-||..-.+. -|-|++++..... +-...-..-.+||+|++|++.|.++..|+.|
T Consensus 74 ~~GDIaYw~pgg--------~LaIFyg~~p~s~--~e~~~a~~v~~lGrI~~~l~~l~~v~~~~~V 129 (136)
T 1zx8_A 74 EIGDVGYWPPGK--------ALCLFFGKTPMSD--DKIQPASAVNVIGKIVEGLEDLKKIKDGEKV 129 (136)
T ss_dssp CTTEEEEEGGGT--------EEEEESSCCTTCS--SSBCCSSCEEEEEEEEECGGGGGGCCTTCEE
T ss_pred CCCcEEEeCCCC--------EEEEEeCCCcccc--CccccCcCcEEEEEEccCHHHHhhCCCCceE
Confidence 478888655432 3666666521110 0001112357899999999999999888743
No 43
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=29.81 E-value=13 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCcCCc
Q 012579 308 GNVAKLVIDGAYDGT 322 (460)
Q Consensus 308 ~NFl~Lv~~GfYDGt 322 (460)
.||-.-.++|||||-
T Consensus 4 knfwsslrkgfydge 18 (26)
T 2khf_A 4 KNFWSSLRKGFYDGE 18 (26)
T ss_dssp HHHHHHHHHHHTTTH
T ss_pred HHHHHHHHhhcccch
Confidence 589988899999984
Done!