Query 012583
Match_columns 460
No_of_seqs 338 out of 1938
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 7.8E-20 2.7E-24 144.0 6.3 60 251-310 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 4.2E-19 1.4E-23 139.8 5.5 58 159-217 2-62 (63)
3 3igm_B PF14_0633 protein; AP2 93.0 0.048 1.7E-06 44.5 2.5 29 155-183 3-31 (77)
4 1u3e_M HNH homing endonuclease 78.8 0.094 3.2E-06 47.4 -4.2 88 197-292 55-146 (174)
5 1u3e_M HNH homing endonuclease 74.5 0.13 4.4E-06 46.4 -4.5 38 160-199 109-146 (174)
6 3eik_A Tata-box-binding protei 67.4 23 0.0008 33.8 9.1 133 159-298 76-212 (218)
7 2z8u_A Tata-box-binding protei 64.0 37 0.0013 31.5 9.5 133 158-298 45-182 (188)
8 3igm_B PF14_0633 protein; AP2 59.8 4.3 0.00015 33.2 2.1 28 247-276 3-31 (77)
9 1ais_A TBP, protein (tata-bind 58.7 40 0.0014 31.0 8.7 132 159-298 42-178 (182)
10 1mp9_A Tata-binding protein; t 57.2 54 0.0019 30.6 9.5 132 159-298 46-182 (198)
11 1z1b_A Integrase; protein-DNA 42.6 32 0.0011 32.3 5.5 41 162-205 15-55 (356)
12 1z1b_A Integrase; protein-DNA 33.6 53 0.0018 30.7 5.4 42 253-298 14-55 (356)
13 1ytb_A Protein (tata binding p 25.1 1.5E+02 0.0053 27.1 6.8 132 159-297 38-173 (180)
14 1rm1_A Tata-box binding protei 20.6 1.6E+02 0.0056 28.3 6.2 132 159-297 98-233 (240)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.79 E-value=7.8e-20 Score=144.00 Aligned_cols=60 Identities=38% Similarity=0.592 Sum_probs=56.1
Q ss_pred cccCceeeccccEEEEecccc-CceEEeecCCCCHHHHHHHHHHHHHHccCCCCCCCCCCc
Q 012583 251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (460)
Q Consensus 251 kyRGV~~~k~GKW~ArI~~~~-~gK~i~LGtFdTeEEAArAYD~AAikl~G~~A~tNF~~s 310 (460)
+|+||+++++|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999999999999998655 479999999999999999999999999999999999875
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.76 E-value=4.2e-19 Score=139.82 Aligned_cols=58 Identities=48% Similarity=0.823 Sum_probs=53.9
Q ss_pred ceEEEEEecCCCeEEEEEeeC---CeEEEeCCCCCHHHHHHHHHHHHHHhcCcccCcccccc
Q 012583 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE 217 (460)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~---gKri~LGtFdTeEEAArAYD~Aai~l~G~~A~~NFp~s 217 (460)
+||||++ +++|||+|+|+++ ++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999997 4689999999994 78999999999999999999999999999999999853
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.99 E-value=0.048 Score=44.51 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.4
Q ss_pred CCCCceEEEEEecCCCeEEEEEeeCCeEE
Q 012583 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV 183 (460)
Q Consensus 155 ~~sSgYRGV~~~r~~GKW~A~I~~~gKri 183 (460)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46799999999999999999999998753
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=78.78 E-value=0.094 Score=47.39 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCccc---Cccccc-ccchhhhhhhccccccceeeeeccccCCCCCCCccccCceeeccccEEEEeccccC
Q 012583 197 AYDRAAIKFRGAEA---DINFSI-EDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 272 (460)
Q Consensus 197 AYD~Aai~l~G~~A---~~NFp~-sdYeeeLkqLreLSKEE~VaaLRRqS~g~~r~sSkyRGV~~~k~GKW~ArI~~~~~ 272 (460)
++...+..|.|... ..++-- ......+..|..+|..|......+... . ..++||.+.+.++|.+.| ...
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeeeccCCCCceEE--EEc
Confidence 55555666666432 122211 112345667777787777654443321 1 124677663356788888 344
Q ss_pred ceEEeecCCCCHHHHHHHHH
Q 012583 273 KKYVYLGLFDTEVEAARAYD 292 (460)
Q Consensus 273 gK~i~LGtFdTeEEAArAYD 292 (460)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 5567999999999999964
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=74.47 E-value=0.13 Score=46.44 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=31.7
Q ss_pred eEEEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHH
Q 012583 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYD 199 (460)
Q Consensus 160 YRGV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD 199 (460)
++||.+ +..++|.+.|... +.++||.|.|.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 467776 5667799999988 7788999999999999874
No 6
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=67.44 E-value=23 Score=33.76 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=81.4
Q ss_pred ceEEEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHHHHHHHhcCcccCcc---cccccchhhhhhhcccccccee
Q 012583 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADIN---FSIEDYEDDLKQMSNLTKEEFV 235 (460)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~Aai~l~G~~A~~N---Fp~sdYeeeLkqLreLSKEE~V 235 (460)
+|-||.++-+.-+=.+-|+..||-+..|. .++++|..|.++.+..+....-... |.+.........-..+..+++.
T Consensus 76 ~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la 154 (218)
T 3eik_A 76 RFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLA 154 (218)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred cCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHH
Confidence 45678777778888999999999888886 5688899998887776653221222 2211111000000011112222
Q ss_pred eeeccccCCCCCCCccccCceeec-cccEEEEeccccCceEEeecCCCCHHHHHHHHHHHHHHc
Q 012583 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (460)
Q Consensus 236 aaLRRqS~g~~r~sSkyRGV~~~k-~GKW~ArI~~~~~gK~i~LGtFdTeEEAArAYD~AAikl 298 (460)
...+... .-....|-|+.++- ..|=..-| +..||-+..|. .+++|+..|++...-.|
T Consensus 155 ~~~~~~~---~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 155 YAHSNYC---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHSTTTE---ECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HhccCCc---EECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 1111111 12345788888763 45667777 88999998886 77999999998866444
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=64.03 E-value=37 Score=31.49 Aligned_cols=133 Identities=15% Similarity=0.179 Sum_probs=75.2
Q ss_pred CceEEEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--cc-c-Ccccccccchhhhhhhccccccc
Q 012583 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (460)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~Aai~l~G--~~-A-~~NFp~sdYeeeLkqLreLSKEE 233 (460)
.+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+.. -. . ..+|.+..-.....--..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 123 (188)
T ss_dssp ----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHH
T ss_pred CCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHH
Confidence 3577888777777889999999998888864 556777777776554432 11 1 12332211110000000111111
Q ss_pred eeeeeccccCCCCCCCccccCceeec-cccEEEEeccccCceEEeecCCCCHHHHHHHHHHHHHHc
Q 012583 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (460)
Q Consensus 234 ~VaaLRRqS~g~~r~sSkyRGV~~~k-~GKW~ArI~~~~~gK~i~LGtFdTeEEAArAYD~AAikl 298 (460)
+...+ +.+ .-...+|-|+..+- .-|-.+-| +..||-+..|. .+++|+..|+++....+
T Consensus 124 la~~~-~~~---eYePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 124 IALMV-EGT---EYEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHS-TTE---EECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHhhC-cCc---EECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11111 111 12345788988763 45667777 88999998885 56788999988866554
No 8
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=59.76 E-value=4.3 Score=33.17 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCCccccCceeec-cccEEEEeccccCceEE
Q 012583 247 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYV 276 (460)
Q Consensus 247 r~sSkyRGV~~~k-~GKW~ArI~~~~~gK~i 276 (460)
..+|+|.||+|.+ .+.|.|.-. .++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFY--DGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEE--ETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEe--cCCeEe
Confidence 3568999999987 689999873 455544
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=58.67 E-value=40 Score=31.02 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=77.5
Q ss_pred ceEEEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--cc-c-Ccccccccchhhhhhhccccccce
Q 012583 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEEF 234 (460)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~Aai~l~G--~~-A-~~NFp~sdYeeeLkqLreLSKEE~ 234 (460)
+|-||.++-+.-+=.+.|+..||-+--|. .++++|..|....+..+.. -. . ..+|.+..-.....--..+..+++
T Consensus 42 ~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~l 120 (182)
T 1ais_A 42 EFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVV 120 (182)
T ss_dssp TCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHH
T ss_pred ccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHH
Confidence 46677766666677899999998776664 6778888888876655533 21 1 123322111100000001111111
Q ss_pred eeeeccccCCCCCCCccccCceeec-cccEEEEeccccCceEEeecCCCCHHHHHHHHHHHHHHc
Q 012583 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (460)
Q Consensus 235 VaaLRRqS~g~~r~sSkyRGV~~~k-~GKW~ArI~~~~~gK~i~LGtFdTeEEAArAYD~AAikl 298 (460)
...+ +.+ .-...+|-|+..+- .-+=.+-| +..||-+..|. .+++++..|+++....+
T Consensus 121 a~~~-~~~---~YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 121 ALTL-PNC---EYEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHS-TTE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HhhC-CCC---EECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 1111 111 22345788988763 45677777 88999998885 56789999998876655
No 10
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=57.18 E-value=54 Score=30.57 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=78.1
Q ss_pred ceEEEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--cc-c-Ccccccccchhhhhhhccccccce
Q 012583 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEEF 234 (460)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~Aai~l~G--~~-A-~~NFp~sdYeeeLkqLreLSKEE~ 234 (460)
+|-||.++-+.-+=.+-|+..||-+--|.. ++++|..|....+..+.. -. . ..+|.+..-.....--..+..+.+
T Consensus 46 ~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~l 124 (198)
T 1mp9_A 46 QFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKA 124 (198)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHH
T ss_pred cccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHH
Confidence 466887777777889999999998888875 456777777776655533 11 1 123321111100000000111111
Q ss_pred eeeeccccCCCCCCCccccCceee-ccccEEEEeccccCceEEeecCCCCHHHHHHHHHHHHHHc
Q 012583 235 VHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (460)
Q Consensus 235 VaaLRRqS~g~~r~sSkyRGV~~~-k~GKW~ArI~~~~~gK~i~LGtFdTeEEAArAYD~AAikl 298 (460)
...+ +.+ .-...+|-|+..+ ..-|-.+-| +..||-+..|. .+++++..|.++..-.|
T Consensus 125 a~~~-~~~---~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (198)
T 1mp9_A 125 AFLL-ENN---MYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKL 182 (198)
T ss_dssp HHHS-SSE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred Hhhc-CCc---EECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 1111 111 2234578898877 345777777 88999998885 56778999998877666
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=42.63 E-value=32 Score=32.29 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.3
Q ss_pred EEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHHHHHHHh
Q 012583 162 GVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (460)
Q Consensus 162 GV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~Aai~l 205 (460)
||+ .++.|.|.......||++.+|. |..||-.+...+...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 3567899988877899999996 8888777666554444
No 12
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=33.62 E-value=53 Score=30.73 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=30.7
Q ss_pred cCceeeccccEEEEeccccCceEEeecCCCCHHHHHHHHHHHHHHc
Q 012583 253 RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (460)
Q Consensus 253 RGV~~~k~GKW~ArI~~~~~gK~i~LGtFdTeEEAArAYD~AAikl 298 (460)
.||..++.|.|..+. ...|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 467777788999887 45778899996 8888877666554444
No 13
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=25.14 E-value=1.5e+02 Score=27.07 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=74.3
Q ss_pred ceEEEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHHHHHHHhc--Cccc-Ccccccccchhhhhhhcccccccee
Q 012583 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA-DINFSIEDYEDDLKQMSNLTKEEFV 235 (460)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~Aai~l~--G~~A-~~NFp~sdYeeeLkqLreLSKEE~V 235 (460)
.|-||.++-+.-|=.+-|+..||-+--|. .++++|..|.+..+..+. |-.. ..||.+.........-..+..+.+.
T Consensus 38 ~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la 116 (180)
T 1ytb_A 38 RFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLA 116 (180)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred ccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHHH
Confidence 46688877777788999999999887776 456778887777655543 2211 1333321111100000011111111
Q ss_pred eeeccccCCCCCCCccccCceeec-cccEEEEeccccCceEEeecCCCCHHHHHHHHHHHHHH
Q 012583 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (460)
Q Consensus 236 aaLRRqS~g~~r~sSkyRGV~~~k-~GKW~ArI~~~~~gK~i~LGtFdTeEEAArAYD~AAik 297 (460)
......+ .-....|-|+.++- ..|=..-| +..||-+..|. .+++|+..|++.-.-.
T Consensus 117 ~~~~~~~---~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~ 173 (180)
T 1ytb_A 117 FSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 173 (180)
T ss_dssp HHTTTTE---ECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred Hhcccce---EECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 1111111 12345788888763 33445555 88899888885 5677888888876543
No 14
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=20.56 E-value=1.6e+02 Score=28.25 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=74.6
Q ss_pred ceEEEEEecCCCeEEEEEeeCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--ccc-Ccccccccchhhhhhhcccccccee
Q 012583 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AEA-DINFSIEDYEDDLKQMSNLTKEEFV 235 (460)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~Aai~l~G--~~A-~~NFp~sdYeeeLkqLreLSKEE~V 235 (460)
.|-||.++-+.-|-.+-|+..||-+--|. .++++|..|....+..+.. ... -.||.+.........-..+..+.+.
T Consensus 98 ~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGa-ks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la 176 (240)
T 1rm1_A 98 RFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLA 176 (240)
T ss_dssp TCSEEEEEEETTEEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred ccceEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHH
Confidence 46688877777888999999999888886 4566777777765554432 211 1333321111100000011111111
Q ss_pred eeeccccCCCCCCCccccCceeec-cccEEEEeccccCceEEeecCCCCHHHHHHHHHHHHHH
Q 012583 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (460)
Q Consensus 236 aaLRRqS~g~~r~sSkyRGV~~~k-~GKW~ArI~~~~~gK~i~LGtFdTeEEAArAYD~AAik 297 (460)
..+...+ .-....|-|+.++- .-+-...| +..||-+..|. .+++|+..|++...-.
T Consensus 177 ~~~~~~~---~YEPE~fPGLiyR~~~pkvvllI--F~SGKIviTGa-K~~~~~~~Ai~~i~p~ 233 (240)
T 1rm1_A 177 FSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 233 (240)
T ss_dssp HHTTTTE---EEETTTEEEEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred Hhchhcc---EECCccCCceEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 1111111 11234677887763 34556666 88899888885 5677888888875543
Done!