BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012587
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 257/474 (54%), Gaps = 37/474 (7%)
Query: 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR-HSSDAFSRYMQIPGF 66
HV ++P P GH+N + LA+LL G ITF+NTE+ + R+++ AF + F
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD---F 66
Query: 67 QFKTLTDGLP--RDHPRTPDKFPELVDSL--NCATP--PLLKEMV-SDSKSPVNCIITDG 119
F+++ DGL P L S+ N P LL + S + PV C+++D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 120 YMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIK-------GFL----- 167
MS I AA E + + + + SAC+ + ++ G +P K G L
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 168 --------RCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIR 219
R +D+ F R +P D L F ++LNTF +LE +++ +
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALS 246
Query: 220 NHSCPNIYSIGPLNAHLKV--RIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSI 277
+ + P+IY IGPL + LK +I + S+LWK D C+ WL+ + SV+YV+FGS
Sbjct: 247 S-TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGST 305
Query: 278 AVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQ 337
VM+ +QL+EF +GL + KKSFLW+IRPDL+ G G E +RG IA W PQ
Sbjct: 306 TVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIADRGLIASWCPQ 363
Query: 338 EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 397
++VL H ++GGFLTHCGWNST ESI AG+PM+CWP FADQ + RF+ W++G++I
Sbjct: 364 DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN 423
Query: 398 CDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 450
R + K +N+++ ++ ++ + A + A+++ GG SY NL++++ D+
Sbjct: 424 VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 199/442 (45%), Gaps = 46/442 (10%)
Query: 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFL----NTEHYYDRVIRHSSD 55
ME+ HVAI+P P +GH+ ++ A+ L H G+ +TF+ R + S
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 56 AFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCI 115
+ + +P L+ R + V N + V + P +
Sbjct: 61 SSISSVFLPPVDLTDLSSST-----RIESRISLTVTRSNPELRKVFDSFVEGGRLP-TAL 114
Query: 116 ITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGFLRCRDLPSF 175
+ D + + A D A E V F +A F +P + + + LP
Sbjct: 115 VVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGC 174
Query: 176 CRV--NDPMDPH-------LLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC--P 224
V D +DP T+ A+G+++NTF +LE + ++ P
Sbjct: 175 VPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKP 234
Query: 225 NIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQ 284
+Y +GPL V I ++ + + C+ WLD QP SV+YVSFGS ++ +Q
Sbjct: 235 PVYPVGPL-----VNIGKQEAKQTE----ESECLKWLDNQPLGSVLYVSFGSGGTLTCEQ 285
Query: 285 LIEFYYGLVHSKKSFLWVIRP----------DLISGKDGENQIPEELLEATKERG-CIAG 333
L E GL S++ FLWVIR D S D +P LE TK+RG I
Sbjct: 286 LNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF 345
Query: 334 WVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD 393
W PQ +VLAH + GGFLTHCGWNSTLES+V+G+P+I WP +A+Q++N+ + E + L
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 405
Query: 394 IK----DLCDRNIVEKAVNDLM 411
+ L R V + V LM
Sbjct: 406 PRAGDDGLVRREEVARVVKGLM 427
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 216/486 (44%), Gaps = 78/486 (16%)
Query: 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQ 67
+ +P P +GH+ S L A+LL + + ++ Y V ++ PG
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTN--------HDKNLYITVF---------CIKFPGMP 53
Query: 68 F-----KTLTDGLPR----DHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIIT- 117
F K++ P+ D P EL+ S L+ ++ K+ + I++
Sbjct: 54 FADSYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN 113
Query: 118 -------DGYMSRAIDAAREVGVSIIYFRTISACAFWSFHC------IPDIIDAGE---- 160
D + ID E G+ F T S F S I ++ D +
Sbjct: 114 KVVGLVLDFFCVSMIDVGNEFGIPSYLFLT-SNVGFLSLMLSLKNRQIEEVFDDSDRDHQ 172
Query: 161 -LPIKGF---LRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILS 216
L I G + LP C D A R G+I+NTF DLE +
Sbjct: 173 LLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFR---DTKGIIVNTFSDLEQSSID 229
Query: 217 QIRNH--SCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSF 274
+ +H P IY++GPL P+ + L + WLD+QP +SV+++ F
Sbjct: 230 ALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDL------ILKWLDEQPDKSVVFLCF 283
Query: 275 GSIAV-MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLE--ATKERGCI 331
GS+ V Q+ E GL HS FLW S + PE LE + +G I
Sbjct: 284 GSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMI 336
Query: 332 AGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLG 391
GW PQ EVLAH A+GGF++HCGWNS LES+ G+P++ WP +A+QQ+N+ + + W +G
Sbjct: 337 CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Query: 392 LDIK-------DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLD 444
L ++ D+ +EK + DLM ++ + M +++ +V GGSS ++
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVG 455
Query: 445 RLVNDI 450
+L++DI
Sbjct: 456 KLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 215/482 (44%), Gaps = 78/482 (16%)
Query: 12 LPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQF--- 68
+P P +GH+ S L A+LL + + ++ Y V ++ PG F
Sbjct: 15 IPAPGIGHLASALEFAKLLTN--------HDKNLYITVF---------CIKFPGMPFADS 57
Query: 69 --KTLTDGLPR----DHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIIT----- 117
K++ P+ D P EL+ S L+ ++ K+ + I++
Sbjct: 58 YIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVG 117
Query: 118 ---DGYMSRAIDAAREVGVSIIYFRTISACAFWSFHC------IPDIIDAGE-----LPI 163
D + ID E G+ F T S F S I ++ D + L I
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLT-SNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNI 176
Query: 164 KGF---LRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRN 220
G + LP C D A R G+I+NTF DLE + + +
Sbjct: 177 PGISNQVPSNVLPDACFNKDGGYIAYYKLAERFR---DTKGIIVNTFSDLEQSSIDALYD 233
Query: 221 H--SCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIA 278
H P IY++GPL P+ + L + WLD+QP +SV+++ FGS+
Sbjct: 234 HDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDL------ILKWLDEQPDKSVVFLCFGSMG 287
Query: 279 V-MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLE--ATKERGCIAGWV 335
V Q+ E GL HS FLW S + PE LE + +G I GW
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWA 340
Query: 336 PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK 395
PQ EVLAH A+GGF++HCGWNS LES+ G+P++ WP +A+QQ+N+ + + W +GL ++
Sbjct: 341 PQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLR 400
Query: 396 -------DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVN 448
D+ +EK + DLM ++ + M +++ +V GGSS ++ +L++
Sbjct: 401 VDYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459
Query: 449 DI 450
DI
Sbjct: 460 DI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 120/468 (25%), Positives = 209/468 (44%), Gaps = 47/468 (10%)
Query: 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRY 60
M + +HVA+L P H +L+L + + K+T + + FSR
Sbjct: 8 MNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVT-----FSFFCTTTTNDTLFSRS 62
Query: 61 MQ-IPGFQFKTLTDGLPRDH-----PRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNC 114
+ +P ++ + DGLP+ + PR P + ++ ++ E V+++ + C
Sbjct: 63 NEFLPNIKYYNVHDGLPKGYVSSGNPREPIFL--FIKAMQENFKHVIDEAVAETGKNITC 120
Query: 115 IITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDII----------DAGELPI- 163
++TD + D A E+ + T + + H D+I D + +
Sbjct: 121 LVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLT-HVYTDLIREKTGSKEVHDVKSIDVL 179
Query: 164 KGF--LRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNH 221
GF L+ DLP + D P + + A+ + +N+F + P++ N
Sbjct: 180 PGFPELKASDLPEGV-IKDIDVPFATMLHKMGLELPRANAVAINSFATIH-PLIENELNS 237
Query: 222 SCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMS 281
+ ++GP N + P++ S + C+ WLD+ SV+Y+SFGS+
Sbjct: 238 KFKLLLNVGPFN----LTTPQRKVSD------EHGCLEWLDQHENSSVVYISFGSVVTPP 287
Query: 282 RDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVL 341
+L L F+W R D + ++P+ LE TK +G I W PQ E+L
Sbjct: 288 PHELTALAESLEECGFPFIWSFR------GDPKEKLPKGFLERTKTKGKIVAWAPQVEIL 341
Query: 342 AHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD-LCDR 400
HS+VG FLTH GWNS LE IV G+PMI P F DQ +N+ V ++G+ + + + +
Sbjct: 342 KHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTK 401
Query: 401 NIVEKAVNDLMVERKEEFM-ESADRMANLAKKSVNKGGSSYCNLDRLV 447
++KA+ M K M + ++ A K+V + G+S + L+
Sbjct: 402 ESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 192/410 (46%), Gaps = 42/410 (10%)
Query: 71 LTDGLPRDHPRTPDKFPELVDSLNCATPPLLKE----MVSDSKSPVNCIITDGYMSRAID 126
++DG+P + + E ++ A P ++ V+++ PV+C++ D ++ A D
Sbjct: 69 ISDGVPEGYVFA-GRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAAD 127
Query: 127 AAREVGVSIIYFRTISACAFWSFHCIPDI--------IDAGE------LPIKGFLRCRDL 172
A E+GV+ + F T + + I +I I E +P +R RDL
Sbjct: 128 MAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDL 187
Query: 173 PSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPL 232
+ + R ++ A + +N+FE+L+ + + +++ +IGP
Sbjct: 188 QEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKS-KLKTYLNIGPF 246
Query: 233 NAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGL 292
N + P +++ C+ WL ++ SV+Y+SFG++ +++ L
Sbjct: 247 N----LITPPPVVPNTT------GCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEAL 296
Query: 293 VHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTH 352
S+ F+W +R +PE LE T+ G + W PQ EVLAH AVG F+TH
Sbjct: 297 EASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTH 350
Query: 353 CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD--LCDRNIVEKAVNDL 410
CGWNS ES+ G+P+IC P F DQ++N R V +V ++G+ I+ ++ L
Sbjct: 351 CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQIL 410
Query: 411 MVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMMSSQPQNC 460
E+ ++ E+ + A ++V GSS N LV+ + S+P++
Sbjct: 411 SQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVD----LVSKPKDV 456
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 334 WVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQIN---SRFVGEVWKL 390
W+PQ ++L H F+TH G N E+I G+P + P FADQ N + G ++
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134
Query: 391 GLDIKDLCD-RNIVEKAVND 409
+ D N +++ +ND
Sbjct: 135 DFNTXSSTDLLNALKRVIND 154
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 334 WVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD 393
WVPQ ++L ++ F+TH G ST+E++ +PM+ P A+Q +N+ + E LGL
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE---LGLG 366
Query: 394 IKDLCDRNIVEK 405
D+ EK
Sbjct: 367 RHIPRDQVTAEK 378
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 334 WVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD 393
WVPQ +L + + F+TH G + E + PMI P DQ N+ + GL
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-----QGLG 342
Query: 394 IKDLCDRNIVEKAVNDLMVERKEEFM---ESADRMANLAKKSVNKGGS 438
+ + E+A DL+ E + E A R+ + + +GG+
Sbjct: 343 V---ARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGT 387
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 334 WVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 392
W+P VLAH+ LTH + LE+ AG+P++ P FA + S V +LGL
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS--AERVIELGL 342
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 20/137 (14%)
Query: 259 AWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIP 318
A+LD P +Y+ FGS+ + + H ++ L DL+ DG +
Sbjct: 232 AFLDAGPPP--VYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGAD--- 286
Query: 319 EELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQ 378
C A +VL V + H G +T + AG P I P ADQ
Sbjct: 287 -----------CFAIGEVNHQVL-FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQP 334
Query: 379 INSRFVGEVWKLGLDIK 395
+ G V +LG+ +
Sbjct: 335 Y---YAGRVAELGVGVA 348
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 259 AWLD-KQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDL-ISGKDGENQ 316
AWL + + ++Y++ G+ + + + L GL L P L +SG +
Sbjct: 233 AWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGL---GE 289
Query: 317 IPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFAD 376
+P + + WVPQ +L H + + H G +TL ++ AG+P + +P D
Sbjct: 290 VPANV--------RLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 321 LLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAG--MPMICWPSF 374
L++ +ERG +A +E + A G +CG++ T +S+ G +P++C F
Sbjct: 2 LIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRF 57
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 321 LLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAG--MPMICWPSF 374
L++ +ERG +A +E + A G +CG++ T +S+ G +P++C F
Sbjct: 6 LIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRF 61
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 334 WVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEV 387
WVP +VL + V +TH G + E++ G P++ P D Q +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 334 WVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEV 387
WVP +VL + V +TH G + E++ G P++ P D Q +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 266 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLW-----VIRPDLISGKDGENQIPEE 320
+Q V+ S +A S D+ +F GL +K W V PD ++ E
Sbjct: 210 RQRVLVTSGSRVAKESYDRNFDFLRGL--AKDLVRWDVELIVAAPDTVA----------E 257
Query: 321 LLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQIN 380
L A + + GW P + V + + H G STL + AG+P + P + +
Sbjct: 258 ALRAEVPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAP 314
Query: 381 SRFVGE 386
+R V +
Sbjct: 315 ARRVAD 320
>pdb|4DVC|A Chain A, Structural And Functional Studies Of Tcpg, The Vibrio
Cholerae Dsba Disulfide-Forming Protein Required For
Pilus And Cholera Toxin Production
Length = 184
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 213 PILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYV 272
P++S+ + CP+ + P+ A LK ++PE K ++ ++++ Q++
Sbjct: 23 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGA-------KFQKNHVSFMGGNMGQAMSKA 75
Query: 273 SFGSIAVMSRDQLIEFYYGLVHS 295
IA+ D+++ + +H+
Sbjct: 76 YATMIALEVEDKMVPVMFNRIHT 98
>pdb|2IJY|A Chain A, Nmr Structure Ensemble For The Reduced Dsba Disulphide
Oxidoreductase From Vibrio Cholerae
Length = 181
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 213 PILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYV 272
P++S+ + CP+ + P+ A LK ++PE K ++ ++++ Q++
Sbjct: 20 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGA-------KFQKNHVSFMGGNMGQAMSKA 72
Query: 273 SFGSIAVMSRDQLIEFYYGLVHS 295
IA+ D+++ + +H+
Sbjct: 73 YATMIALEVEDKMVPVMFNRIHT 95
>pdb|1BED|A Chain A, Structure Of Disulfide Oxidoreductase
Length = 181
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 213 PILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYV 272
P++S+ + CP+ + P+ A LK ++PE K ++ ++++ Q++
Sbjct: 20 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGA-------KFQKNHVSFMGGNMGQAMSKA 72
Query: 273 SFGSIAVMSRDQLIEFYYGLVHS 295
IA+ D+++ + +H+
Sbjct: 73 YATMIALEVEDKMVPVMFNRIHT 95
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 321 LLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAG--MPMICWPSF 374
L++ +ERG +A +E + A G CG++ T +S+ G +P++C F
Sbjct: 2 LIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRF 57
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 321 LLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAG--MPMICWPSF 374
L++ +ERG +A +E + A G CG++ T +S+ G +P++C F
Sbjct: 5 LIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRF 60
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 321 LLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAG--MPMICWPSF 374
L++ +ERG +A +E + A G CG++ T +S+ G +P++C F
Sbjct: 6 LIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRF 61
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 18/66 (27%)
Query: 107 DSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG-ELPIKG 165
D SP+N ++RAID A E+G +II+ CAF C P G E+ ++
Sbjct: 167 DVMSPLN-------LARAIDLALELGANIIH------CAF----CRPTQTSEGEEILVQA 209
Query: 166 FLRCRD 171
+C+D
Sbjct: 210 IKKCQD 215
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 18/66 (27%)
Query: 107 DSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG-ELPIKG 165
D SP+N ++RAID A E+G +II+ CAF C P G E+ ++
Sbjct: 149 DVMSPLN-------LARAIDLALELGANIIH------CAF----CRPTQTSEGEEILVQA 191
Query: 166 FLRCRD 171
+C+D
Sbjct: 192 IKKCQD 197
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 18/66 (27%)
Query: 107 DSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG-ELPIKG 165
D SP+N ++RAID A E+G +II+ CAF C P G E+ ++
Sbjct: 167 DVMSPLN-------LARAIDLALELGANIIH------CAF----CRPTQTSEGEEILVQA 209
Query: 166 FLRCRD 171
+C+D
Sbjct: 210 IKKCQD 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,120,838
Number of Sequences: 62578
Number of extensions: 591341
Number of successful extensions: 1200
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 32
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)