Query 012587
Match_columns 460
No_of_seqs 127 out of 1230
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.8E-62 3.8E-67 480.9 44.3 429 1-452 1-450 (451)
2 PLN02562 UDP-glycosyltransfera 100.0 5.5E-62 1.2E-66 478.9 45.1 425 1-451 1-448 (448)
3 PLN02555 limonoid glucosyltran 100.0 2.1E-61 4.7E-66 474.8 45.7 445 1-453 1-470 (480)
4 PLN02173 UDP-glucosyl transfer 100.0 1.8E-61 3.9E-66 471.5 44.7 430 1-451 1-447 (449)
5 PLN02207 UDP-glycosyltransfera 100.0 2.4E-60 5.3E-65 465.2 45.1 433 4-452 1-465 (468)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.4E-60 7.3E-65 468.0 45.1 441 4-455 7-474 (477)
7 PLN02210 UDP-glucosyl transfer 100.0 4.2E-60 9.1E-65 466.0 44.8 425 5-451 7-454 (456)
8 PLN02152 indole-3-acetate beta 100.0 5.5E-60 1.2E-64 461.8 44.2 434 6-450 3-454 (455)
9 PLN02448 UDP-glycosyltransfera 100.0 1.8E-59 3.9E-64 464.7 44.1 423 4-452 8-457 (459)
10 PLN02670 transferase, transfer 100.0 5.5E-59 1.2E-63 456.1 41.6 435 1-454 1-467 (472)
11 PLN00164 glucosyltransferase; 100.0 1.6E-58 3.6E-63 457.6 45.3 433 5-455 2-476 (480)
12 PLN02992 coniferyl-alcohol glu 100.0 1.6E-58 3.6E-63 453.1 44.6 420 7-452 6-469 (481)
13 PLN02764 glycosyltransferase f 100.0 4.7E-58 1E-62 445.9 45.2 430 1-457 1-450 (453)
14 PLN02208 glycosyltransferase f 100.0 2.5E-58 5.5E-63 450.4 42.8 418 1-453 1-440 (442)
15 PLN03007 UDP-glucosyltransfera 100.0 3.7E-58 8E-63 457.6 44.6 442 1-452 1-480 (482)
16 PLN02534 UDP-glycosyltransfera 100.0 3.5E-58 7.5E-63 452.6 43.6 440 4-453 6-487 (491)
17 PLN03015 UDP-glucosyl transfer 100.0 1.5E-57 3.3E-62 443.6 44.5 429 5-451 2-467 (470)
18 PLN02554 UDP-glycosyltransfera 100.0 7.2E-58 1.6E-62 454.8 43.0 431 7-453 3-479 (481)
19 PLN02167 UDP-glycosyltransfera 100.0 9.5E-58 2.1E-62 453.3 41.3 430 5-454 2-474 (475)
20 PLN03004 UDP-glycosyltransfera 100.0 1.1E-57 2.4E-62 445.2 40.5 419 7-441 4-450 (451)
21 PLN00414 glycosyltransferase f 100.0 8.6E-57 1.9E-61 440.1 43.7 416 6-454 4-442 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3E-48 6.4E-53 387.0 34.6 399 6-454 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 4.8E-49 1E-53 399.6 8.6 394 8-453 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 5.6E-43 1.2E-47 344.3 33.1 369 12-450 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.3E-43 5E-48 348.6 28.2 378 7-449 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 2.5E-43 5.5E-48 342.5 22.4 385 6-453 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.2E-38 9.1E-43 319.6 25.8 413 6-452 5-455 (496)
28 PRK12446 undecaprenyldiphospho 100.0 8.4E-27 1.8E-31 224.0 26.9 317 6-424 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 100.0 2.4E-26 5.2E-31 220.0 23.8 303 7-410 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.4E-22 5.3E-27 190.7 28.7 324 7-431 1-337 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.8E-23 8.1E-28 197.5 22.8 308 8-419 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 2.3E-19 4.9E-24 174.6 27.5 322 6-429 1-338 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 8.6E-18 1.9E-22 163.1 26.8 317 8-422 1-331 (350)
34 TIGR01133 murG undecaprenyldip 99.8 2.1E-16 4.5E-21 153.3 24.5 318 7-431 1-334 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 1.2E-16 2.6E-21 156.0 22.5 348 7-448 6-384 (385)
36 COG4671 Predicted glycosyl tra 99.7 7.9E-16 1.7E-20 139.3 22.8 328 3-412 6-364 (400)
37 PRK13609 diacylglycerol glucos 99.7 3.8E-15 8.3E-20 146.2 24.0 140 265-422 200-345 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 3.1E-15 6.7E-20 139.3 21.9 255 16-383 13-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 4.7E-14 1E-18 138.5 25.9 323 6-426 1-352 (380)
40 PRK13608 diacylglycerol glucos 99.6 2.9E-14 6.3E-19 140.0 19.4 164 265-450 200-369 (391)
41 PLN02605 monogalactosyldiacylg 99.5 1.9E-12 4.2E-17 126.9 23.8 149 265-431 204-361 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 1.3E-15 2.8E-20 131.2 -1.8 135 269-413 1-144 (167)
43 PF03033 Glyco_transf_28: Glyc 99.4 1E-13 2.3E-18 115.5 3.9 124 9-145 1-134 (139)
44 TIGR03492 conserved hypothetic 99.4 1.1E-10 2.3E-15 114.3 25.2 328 16-422 6-371 (396)
45 cd03814 GT1_like_2 This family 99.4 3.2E-09 6.9E-14 103.0 32.7 329 8-428 1-345 (364)
46 COG3980 spsG Spore coat polysa 99.4 8.5E-11 1.8E-15 103.8 18.8 294 7-426 1-304 (318)
47 PLN02871 UDP-sulfoquinovose:DA 99.4 7.1E-09 1.5E-13 104.5 35.0 328 4-422 56-407 (465)
48 cd03823 GT1_ExpE7_like This fa 99.3 1.3E-08 2.8E-13 98.5 30.6 139 266-422 189-336 (359)
49 PRK10307 putative glycosyl tra 99.3 2.8E-08 6.1E-13 98.7 32.2 81 327-413 284-373 (412)
50 cd03794 GT1_wbuB_like This fam 99.2 2.2E-08 4.7E-13 97.8 28.4 345 8-424 1-374 (394)
51 cd03808 GT1_cap1E_like This fa 99.2 4.6E-08 9.9E-13 94.3 29.0 319 8-422 1-336 (359)
52 cd04962 GT1_like_5 This family 99.2 8.6E-08 1.9E-12 93.7 29.9 85 326-420 252-341 (371)
53 TIGR00236 wecB UDP-N-acetylglu 99.1 2.5E-08 5.5E-13 97.3 23.7 326 7-423 1-342 (365)
54 cd03817 GT1_UGDG_like This fam 99.1 4.4E-07 9.5E-12 88.1 32.4 129 266-413 200-343 (374)
55 cd03818 GT1_ExpC_like This fam 99.1 2.8E-07 6E-12 91.1 30.4 88 326-421 280-372 (396)
56 cd03816 GT1_ALG1_like This fam 99.1 4.4E-07 9.5E-12 90.1 31.8 120 5-140 2-129 (415)
57 cd03800 GT1_Sucrose_synthase T 99.1 2.4E-07 5.2E-12 91.3 30.0 84 326-419 282-372 (398)
58 PRK05749 3-deoxy-D-manno-octul 99.1 3.6E-07 7.7E-12 91.2 30.3 78 338-422 314-395 (425)
59 PF04007 DUF354: Protein of un 99.1 1.6E-07 3.5E-12 88.7 25.4 301 7-411 1-308 (335)
60 cd03825 GT1_wcfI_like This fam 99.0 6.8E-07 1.5E-11 86.9 30.4 83 325-417 242-332 (365)
61 cd03801 GT1_YqgM_like This fam 99.0 8.8E-07 1.9E-11 85.5 30.8 320 8-421 1-347 (374)
62 cd03795 GT1_like_4 This family 99.0 3E-07 6.5E-12 89.1 26.4 135 267-420 190-337 (357)
63 cd03820 GT1_amsD_like This fam 99.0 1E-06 2.2E-11 84.5 29.0 96 326-430 234-334 (348)
64 TIGR03449 mycothiol_MshA UDP-N 99.0 3.9E-06 8.4E-11 83.1 33.9 88 326-423 282-376 (405)
65 cd03798 GT1_wlbH_like This fam 99.0 2.2E-06 4.8E-11 82.9 30.8 313 16-417 13-346 (377)
66 cd03805 GT1_ALG2_like This fam 98.9 1.8E-06 3.8E-11 85.1 29.2 83 326-419 279-368 (392)
67 cd03796 GT1_PIG-A_like This fa 98.9 2.8E-06 6.1E-11 84.0 29.5 78 326-413 249-333 (398)
68 PRK14089 ipid-A-disaccharide s 98.9 7.1E-07 1.5E-11 85.1 23.9 145 267-429 167-332 (347)
69 cd03821 GT1_Bme6_like This fam 98.9 7.2E-06 1.6E-10 79.5 31.8 91 326-426 261-356 (375)
70 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 2E-07 4.3E-12 90.9 20.0 130 266-413 197-337 (363)
71 TIGR02472 sucr_P_syn_N sucrose 98.8 2.6E-05 5.6E-10 78.1 34.1 84 326-419 316-410 (439)
72 cd05844 GT1_like_7 Glycosyltra 98.8 2.7E-06 5.8E-11 82.9 26.3 85 326-420 244-341 (367)
73 cd03802 GT1_AviGT4_like This f 98.8 1.7E-06 3.6E-11 83.2 24.2 128 270-413 173-308 (335)
74 cd03819 GT1_WavL_like This fam 98.8 2.7E-05 5.9E-10 75.4 31.2 135 266-412 183-329 (355)
75 cd03822 GT1_ecORF704_like This 98.8 9.5E-06 2.1E-10 78.7 27.9 79 326-413 246-334 (366)
76 cd03807 GT1_WbnK_like This fam 98.8 1.7E-05 3.7E-10 76.5 29.1 77 327-413 251-332 (365)
77 cd04951 GT1_WbdM_like This fam 98.8 9.6E-06 2.1E-10 78.6 27.3 87 326-424 244-336 (360)
78 PRK09922 UDP-D-galactose:(gluc 98.7 6.5E-06 1.4E-10 80.1 23.8 128 268-413 180-324 (359)
79 cd03799 GT1_amsK_like This is 98.7 3.4E-05 7.4E-10 74.6 28.6 80 326-413 235-327 (355)
80 cd03811 GT1_WabH_like This fam 98.7 1.2E-05 2.5E-10 77.2 24.0 80 326-413 245-332 (353)
81 cd03812 GT1_CapH_like This fam 98.6 2.9E-05 6.3E-10 75.3 26.5 136 266-422 190-338 (358)
82 cd04955 GT1_like_6 This family 98.6 2.3E-05 5E-10 76.1 25.8 82 325-420 246-335 (363)
83 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00012 2.6E-09 78.3 32.1 89 326-424 547-646 (1050)
84 COG1519 KdtA 3-deoxy-D-manno-o 98.6 0.00028 6E-09 67.3 31.1 308 13-422 55-393 (419)
85 PLN02275 transferase, transfer 98.6 7.1E-05 1.5E-09 73.2 26.4 75 327-411 286-371 (371)
86 TIGR02149 glgA_Coryne glycogen 98.5 0.00022 4.9E-09 70.0 29.6 135 268-420 201-357 (388)
87 PLN02846 digalactosyldiacylgly 98.5 0.00011 2.4E-09 72.8 26.7 72 331-413 288-363 (462)
88 PRK00654 glgA glycogen synthas 98.5 0.00023 4.9E-09 71.9 28.2 134 267-412 281-427 (466)
89 PF02684 LpxB: Lipid-A-disacch 98.5 0.00015 3.3E-09 69.7 25.0 195 219-441 149-366 (373)
90 TIGR03088 stp2 sugar transfera 98.5 0.00019 4.1E-09 70.3 26.6 83 327-419 255-342 (374)
91 cd03809 GT1_mtfB_like This fam 98.4 6.9E-05 1.5E-09 72.5 22.6 92 325-428 251-349 (365)
92 PRK01021 lpxB lipid-A-disaccha 98.4 0.00038 8.2E-09 70.2 27.6 177 219-423 377-579 (608)
93 COG0381 WecB UDP-N-acetylgluco 98.4 7.9E-05 1.7E-09 70.3 20.9 331 4-424 1-350 (383)
94 KOG3349 Predicted glycosyltran 98.4 1.4E-06 3E-11 69.8 7.3 111 267-389 3-127 (170)
95 TIGR02470 sucr_synth sucrose s 98.4 0.0059 1.3E-07 64.2 36.8 78 326-411 618-707 (784)
96 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00016 3.5E-09 70.3 22.7 318 7-412 1-338 (365)
97 PRK15179 Vi polysaccharide bio 98.3 0.0033 7.1E-08 65.8 32.3 92 326-426 573-674 (694)
98 PLN00142 sucrose synthase 98.3 0.00031 6.8E-09 73.6 24.7 87 327-423 642-744 (815)
99 TIGR03087 stp1 sugar transfera 98.3 0.00014 3.1E-09 71.8 21.4 84 326-421 279-368 (397)
100 cd03792 GT1_Trehalose_phosphor 98.3 0.0015 3.3E-08 63.9 28.5 84 326-421 251-343 (372)
101 PF02350 Epimerase_2: UDP-N-ac 98.3 8.7E-06 1.9E-10 78.3 11.9 255 97-423 55-326 (346)
102 TIGR02095 glgA glycogen/starch 98.2 0.0018 3.8E-08 65.6 28.4 133 268-412 291-436 (473)
103 PLN02316 synthase/transferase 98.1 0.011 2.4E-07 63.9 32.8 117 326-450 899-1030(1036)
104 cd03791 GT1_Glycogen_synthase_ 98.1 0.0024 5.1E-08 64.8 26.3 135 267-413 295-442 (476)
105 COG0763 LpxB Lipid A disacchar 98.1 0.0019 4.1E-08 61.1 23.0 348 6-450 1-379 (381)
106 PLN02949 transferase, transfer 98.0 0.017 3.7E-07 58.0 30.3 79 326-412 334-421 (463)
107 cd03806 GT1_ALG11_like This fa 97.9 0.037 8E-07 55.1 29.9 79 326-413 304-392 (419)
108 cd04950 GT1_like_1 Glycosyltra 97.8 0.031 6.8E-07 54.6 27.9 78 326-413 253-340 (373)
109 COG5017 Uncharacterized conser 97.8 0.00023 5E-09 56.2 9.4 107 270-394 2-121 (161)
110 cd03813 GT1_like_3 This family 97.7 0.021 4.6E-07 57.8 25.2 87 326-422 353-449 (475)
111 PRK15484 lipopolysaccharide 1, 97.7 0.0025 5.5E-08 62.5 17.5 86 325-419 255-348 (380)
112 cd03804 GT1_wbaZ_like This fam 97.7 0.00026 5.6E-09 68.6 10.0 135 270-424 197-336 (351)
113 PF13844 Glyco_transf_41: Glyc 97.6 0.003 6.6E-08 62.2 15.8 136 265-413 282-430 (468)
114 PRK15427 colanic acid biosynth 97.6 0.0031 6.8E-08 62.4 16.3 84 326-419 278-375 (406)
115 PF00534 Glycos_transf_1: Glyc 97.6 0.004 8.6E-08 53.4 15.1 89 325-423 71-166 (172)
116 PLN02501 digalactosyldiacylgly 97.6 0.0074 1.6E-07 61.9 18.4 75 328-413 602-681 (794)
117 cd04946 GT1_AmsK_like This fam 97.5 0.0032 6.9E-08 62.4 15.8 87 327-420 289-382 (407)
118 PRK10017 colanic acid biosynth 97.3 0.21 4.6E-06 49.4 29.1 181 257-452 224-424 (426)
119 PRK09814 beta-1,6-galactofuran 97.3 0.0017 3.7E-08 62.4 10.3 111 325-448 205-331 (333)
120 TIGR02918 accessory Sec system 97.3 0.071 1.5E-06 54.2 22.2 98 326-429 375-484 (500)
121 cd04949 GT1_gtfA_like This fam 97.3 0.031 6.7E-07 54.5 19.1 83 326-413 260-345 (372)
122 PRK10916 ADP-heptose:LPS hepto 97.2 0.051 1.1E-06 52.6 19.5 103 7-137 1-106 (348)
123 PRK10422 lipopolysaccharide co 97.1 0.2 4.4E-06 48.5 23.1 110 1-137 1-113 (352)
124 PRK10125 putative glycosyl tra 97.1 0.34 7.3E-06 48.0 25.6 100 285-408 258-366 (405)
125 cd01635 Glycosyltransferase_GT 97.1 0.082 1.8E-06 46.9 18.2 48 326-375 160-215 (229)
126 PF13477 Glyco_trans_4_2: Glyc 96.9 0.017 3.6E-07 47.6 11.4 103 8-140 1-107 (139)
127 PF06722 DUF1205: Protein of u 96.9 0.00091 2E-08 51.0 3.4 51 256-306 29-84 (97)
128 COG1817 Uncharacterized protei 96.9 0.34 7.4E-06 44.6 24.1 113 8-143 2-115 (346)
129 PF13692 Glyco_trans_1_4: Glyc 96.9 0.004 8.6E-08 51.0 7.4 80 326-413 52-135 (135)
130 TIGR02193 heptsyl_trn_I lipopo 96.9 0.11 2.4E-06 49.5 18.2 131 266-411 178-319 (319)
131 PRK15490 Vi polysaccharide bio 96.8 0.73 1.6E-05 46.8 26.1 74 326-407 454-532 (578)
132 COG0859 RfaF ADP-heptose:LPS h 96.7 0.33 7.2E-06 46.6 20.1 104 6-137 1-107 (334)
133 TIGR02195 heptsyl_trn_II lipop 96.6 0.2 4.2E-06 48.2 17.9 102 8-137 1-105 (334)
134 KOG4626 O-linked N-acetylgluco 96.6 0.05 1.1E-06 54.4 13.1 121 265-395 756-888 (966)
135 TIGR02201 heptsyl_trn_III lipo 96.5 0.32 6.9E-06 47.0 18.5 105 8-137 1-108 (344)
136 PF13579 Glyco_trans_4_4: Glyc 95.9 0.014 3E-07 48.9 5.1 95 22-140 6-104 (160)
137 PRK14098 glycogen synthase; Pr 95.8 0.18 3.8E-06 51.2 13.3 131 268-412 307-450 (489)
138 cd03789 GT1_LPS_heptosyltransf 95.7 1 2.2E-05 42.0 17.4 101 8-137 1-105 (279)
139 COG3914 Spy Predicted O-linked 95.6 0.14 3E-06 51.1 11.3 121 264-394 426-560 (620)
140 PF01975 SurE: Survival protei 95.3 0.11 2.4E-06 45.4 8.5 120 7-142 1-135 (196)
141 PHA01633 putative glycosyl tra 95.2 0.8 1.7E-05 43.8 14.6 85 325-412 199-306 (335)
142 PF13524 Glyco_trans_1_2: Glyc 94.9 0.31 6.8E-06 36.7 9.2 64 352-426 9-73 (92)
143 PF08660 Alg14: Oligosaccharid 93.4 0.48 1E-05 40.5 8.1 116 12-141 3-130 (170)
144 PHA01630 putative group 1 glyc 93.1 4.5 9.7E-05 38.8 15.2 78 333-413 196-294 (331)
145 PRK13932 stationary phase surv 92.4 2.7 5.9E-05 38.3 11.9 117 5-141 4-134 (257)
146 PF06258 Mito_fiss_Elm1: Mitoc 92.3 5.6 0.00012 37.7 14.4 58 335-395 220-281 (311)
147 COG0496 SurE Predicted acid ph 92.0 2.4 5.2E-05 38.3 10.8 113 7-141 1-126 (252)
148 PRK13933 stationary phase surv 91.7 3.6 7.9E-05 37.5 11.8 116 7-141 1-130 (253)
149 PLN02939 transferase, transfer 91.4 6.4 0.00014 42.8 14.9 84 326-412 836-930 (977)
150 cd02067 B12-binding B12 bindin 91.3 1.9 4.1E-05 34.3 8.8 44 8-51 1-44 (119)
151 PF13439 Glyco_transf_4: Glyco 91.3 1 2.2E-05 38.0 7.8 28 16-43 11-38 (177)
152 PRK02261 methylaspartate mutas 90.9 0.6 1.3E-05 38.2 5.6 50 4-53 1-50 (137)
153 TIGR00087 surE 5'/3'-nucleotid 90.9 3.8 8.2E-05 37.2 11.2 116 7-141 1-129 (244)
154 PF12000 Glyco_trans_4_3: Gkyc 90.9 2 4.3E-05 36.6 8.7 94 32-141 1-97 (171)
155 TIGR02400 trehalose_OtsA alpha 90.7 2 4.3E-05 43.2 10.1 103 333-451 342-455 (456)
156 TIGR00715 precor6x_red precorr 90.6 2.4 5.2E-05 38.8 9.7 92 7-138 1-98 (256)
157 PF02951 GSH-S_N: Prokaryotic 90.0 0.51 1.1E-05 37.5 4.2 38 7-44 1-41 (119)
158 PRK00346 surE 5'(3')-nucleotid 89.8 6.5 0.00014 35.8 11.8 112 7-141 1-125 (250)
159 PRK13935 stationary phase surv 89.2 7.5 0.00016 35.4 11.6 115 7-141 1-129 (253)
160 COG0003 ArsA Predicted ATPase 89.2 3.6 7.8E-05 39.0 10.0 39 6-44 1-40 (322)
161 PRK14099 glycogen synthase; Pr 88.7 8.2 0.00018 39.2 13.0 85 326-413 349-447 (485)
162 COG1618 Predicted nucleotide k 88.3 3.9 8.5E-05 34.2 8.2 100 6-121 5-110 (179)
163 PF09314 DUF1972: Domain of un 88.0 15 0.00032 31.8 12.1 57 6-72 1-62 (185)
164 COG4370 Uncharacterized protei 87.6 2 4.4E-05 39.5 6.8 113 326-452 293-409 (412)
165 COG2894 MinD Septum formation 87.2 5.7 0.00012 35.1 9.0 44 6-49 1-46 (272)
166 COG0052 RpsB Ribosomal protein 86.8 3.8 8.3E-05 36.7 7.9 35 110-144 155-191 (252)
167 PRK13931 stationary phase surv 86.8 12 0.00027 34.3 11.5 113 7-140 1-129 (261)
168 PRK02797 4-alpha-L-fucosyltran 86.5 12 0.00026 35.0 11.3 79 327-410 206-291 (322)
169 PRK13934 stationary phase surv 86.1 13 0.00028 34.1 11.2 112 7-140 1-127 (266)
170 PF02441 Flavoprotein: Flavopr 86.0 1.1 2.4E-05 36.2 4.1 44 7-51 1-44 (129)
171 cd03788 GT1_TPS Trehalose-6-Ph 85.3 2.7 5.8E-05 42.4 7.2 70 333-413 347-427 (460)
172 PF02374 ArsA_ATPase: Anion-tr 85.2 1.3 2.8E-05 41.9 4.6 39 7-45 1-40 (305)
173 cd01425 RPS2 Ribosomal protein 84.6 4.1 8.9E-05 35.6 7.2 114 20-142 42-160 (193)
174 cd02070 corrinoid_protein_B12- 83.9 5.6 0.00012 35.0 7.8 47 6-52 82-128 (201)
175 PRK05647 purN phosphoribosylgl 83.6 6.3 0.00014 34.6 7.9 105 6-141 1-111 (200)
176 PF04413 Glycos_transf_N: 3-De 83.6 5.4 0.00012 34.6 7.4 100 9-141 23-127 (186)
177 PRK01077 cobyrinic acid a,c-di 83.3 6.2 0.00014 39.6 8.8 107 5-142 2-124 (451)
178 PF00731 AIRC: AIR carboxylase 83.3 25 0.00054 29.2 12.9 139 268-432 1-149 (150)
179 smart00851 MGS MGS-like domain 82.9 13 0.00028 27.7 8.4 79 23-137 2-90 (90)
180 PRK05973 replicative DNA helic 82.6 8.5 0.00018 34.8 8.5 45 8-52 66-110 (237)
181 PRK10964 ADP-heptose:LPS hepto 82.4 6.7 0.00014 37.4 8.4 43 7-49 1-45 (322)
182 COG0438 RfaG Glycosyltransfera 81.6 45 0.00097 30.9 15.9 87 327-423 257-350 (381)
183 PF10649 DUF2478: Protein of u 81.0 16 0.00035 30.6 9.0 120 9-147 1-138 (159)
184 COG3660 Predicted nucleoside-d 79.9 48 0.001 30.3 19.0 72 288-371 189-271 (329)
185 cd01965 Nitrogenase_MoFe_beta_ 79.7 9.1 0.0002 38.2 8.5 36 99-139 361-396 (428)
186 PF08323 Glyco_transf_5: Starc 79.3 18 0.0004 32.9 9.8 29 21-51 20-48 (245)
187 PF02310 B12-binding: B12 bind 78.9 5.9 0.00013 31.3 5.7 44 8-51 2-45 (121)
188 PF00551 Formyl_trans_N: Formy 78.8 8.8 0.00019 33.1 7.1 106 7-141 1-110 (181)
189 cd01974 Nitrogenase_MoFe_beta 78.5 21 0.00046 35.6 10.7 36 99-139 367-402 (435)
190 PF05159 Capsule_synth: Capsul 78.3 9.7 0.00021 35.2 7.8 42 329-373 185-226 (269)
191 cd00532 MGS-like MGS-like doma 78.2 24 0.00053 27.6 8.9 85 19-138 10-105 (112)
192 TIGR02919 accessory Sec system 77.8 8 0.00017 38.6 7.3 130 266-423 282-420 (438)
193 PRK08305 spoVFB dipicolinate s 77.7 3.7 7.9E-05 35.8 4.3 42 5-46 4-45 (196)
194 PRK06718 precorrin-2 dehydroge 77.3 34 0.00073 30.1 10.4 143 265-432 9-165 (202)
195 COG2099 CobK Precorrin-6x redu 77.0 33 0.00071 31.1 10.1 92 6-138 2-99 (257)
196 cd01980 Chlide_reductase_Y Chl 76.9 26 0.00056 34.8 10.7 95 8-140 282-376 (416)
197 PRK06029 3-octaprenyl-4-hydrox 76.6 3.5 7.6E-05 35.7 3.9 44 6-50 1-45 (185)
198 TIGR02015 BchY chlorophyllide 76.6 18 0.00039 36.0 9.4 90 8-139 287-380 (422)
199 cd00561 CobA_CobO_BtuR ATP:cor 76.5 45 0.00097 28.1 11.2 98 8-122 4-106 (159)
200 KOG2941 Beta-1,4-mannosyltrans 76.4 73 0.0016 30.4 28.4 125 5-145 11-142 (444)
201 PF06506 PrpR_N: Propionate ca 76.2 13 0.00029 31.8 7.5 110 18-142 17-153 (176)
202 PRK07313 phosphopantothenoylcy 75.3 3.6 7.9E-05 35.5 3.7 42 6-49 1-42 (182)
203 PRK12311 rpsB 30S ribosomal pr 75.3 10 0.00023 35.9 7.0 34 110-143 151-186 (326)
204 TIGR03713 acc_sec_asp1 accesso 75.2 10 0.00022 38.8 7.5 74 327-413 409-488 (519)
205 PRK13789 phosphoribosylamine-- 74.7 11 0.00025 37.4 7.6 36 5-45 3-38 (426)
206 PF01075 Glyco_transf_9: Glyco 74.6 12 0.00027 33.8 7.4 94 266-371 104-208 (247)
207 cd01423 MGS_CPS_I_III Methylgl 74.4 32 0.00069 27.0 8.7 94 11-137 4-106 (116)
208 PF01012 ETF: Electron transfe 74.1 5.4 0.00012 33.7 4.5 111 8-141 1-123 (164)
209 TIGR01285 nifN nitrogenase mol 73.8 33 0.00072 34.2 10.6 87 7-139 312-398 (432)
210 COG1797 CobB Cobyrinic acid a, 73.8 4.7 0.0001 39.4 4.3 110 8-146 2-125 (451)
211 PRK14098 glycogen synthase; Pr 73.2 5.6 0.00012 40.5 5.0 38 5-42 4-47 (489)
212 cd01424 MGS_CPS_II Methylglyox 72.4 43 0.00093 25.9 9.0 84 18-137 10-100 (110)
213 PRK06732 phosphopantothenate-- 72.3 4.3 9.2E-05 36.6 3.6 36 7-42 1-48 (229)
214 cd03793 GT1_Glycogen_synthase_ 72.2 21 0.00046 36.7 8.7 75 336-412 467-551 (590)
215 PF04127 DFP: DNA / pantothena 71.8 1.9 4.1E-05 37.3 1.1 38 7-44 4-53 (185)
216 PRK06988 putative formyltransf 71.3 42 0.00091 31.8 10.2 33 6-43 2-34 (312)
217 PF12146 Hydrolase_4: Putative 70.8 7.9 0.00017 28.2 4.0 36 7-42 16-51 (79)
218 cd02071 MM_CoA_mut_B12_BD meth 70.6 9.5 0.00021 30.4 4.9 45 8-52 1-45 (122)
219 cd00550 ArsA_ATPase Oxyanion-t 70.3 18 0.00039 33.2 7.2 42 10-52 4-45 (254)
220 COG2910 Putative NADH-flavin r 70.1 8.6 0.00019 33.0 4.5 33 7-43 1-33 (211)
221 PF04464 Glyphos_transf: CDP-G 69.6 6.9 0.00015 38.1 4.7 99 326-431 251-353 (369)
222 COG2185 Sbm Methylmalonyl-CoA 69.5 10 0.00023 31.0 4.8 47 5-51 11-57 (143)
223 PRK11199 tyrA bifunctional cho 69.3 39 0.00084 33.0 9.7 33 5-42 97-130 (374)
224 TIGR01470 cysG_Nterm siroheme 69.2 61 0.0013 28.6 10.1 145 266-432 9-165 (205)
225 TIGR00347 bioD dethiobiotin sy 69.1 49 0.0011 27.7 9.4 28 13-40 5-32 (166)
226 cd03466 Nitrogenase_NifN_2 Nit 69.1 39 0.00085 33.7 9.9 36 99-139 362-397 (429)
227 TIGR01283 nifE nitrogenase mol 68.9 59 0.0013 32.7 11.2 36 99-139 385-420 (456)
228 PRK00090 bioD dithiobiotin syn 68.8 45 0.00098 29.6 9.5 33 9-41 2-35 (222)
229 PRK05234 mgsA methylglyoxal sy 68.7 65 0.0014 26.5 10.3 100 5-140 3-114 (142)
230 cd01977 Nitrogenase_VFe_alpha 68.6 19 0.00041 35.8 7.5 32 102-138 351-382 (415)
231 PRK14099 glycogen synthase; Pr 68.3 8.2 0.00018 39.2 5.0 38 5-42 2-45 (485)
232 PRK08057 cobalt-precorrin-6x r 68.3 34 0.00074 31.2 8.5 92 6-139 2-99 (248)
233 PRK05920 aromatic acid decarbo 68.0 7.5 0.00016 34.2 4.0 44 6-50 3-46 (204)
234 PLN03063 alpha,alpha-trehalose 67.9 23 0.0005 38.4 8.5 100 338-453 370-478 (797)
235 PF02571 CbiJ: Precorrin-6x re 67.9 31 0.00068 31.5 8.2 94 7-139 1-100 (249)
236 PF02142 MGS: MGS-like domain 67.8 8.9 0.00019 29.0 4.0 85 23-137 2-95 (95)
237 cd07039 TPP_PYR_POX Pyrimidine 67.2 56 0.0012 27.6 9.2 26 348-373 66-97 (164)
238 COG1484 DnaC DNA replication p 66.8 10 0.00022 34.8 4.8 47 6-52 105-151 (254)
239 COG1748 LYS9 Saccharopine dehy 66.6 50 0.0011 32.3 9.6 99 6-144 1-104 (389)
240 PF03808 Glyco_tran_WecB: Glyc 66.0 77 0.0017 27.0 9.9 94 23-142 37-135 (172)
241 TIGR03029 EpsG chain length de 65.9 85 0.0018 28.9 11.0 36 7-42 103-140 (274)
242 PRK09620 hypothetical protein; 65.5 8.4 0.00018 34.7 3.9 38 6-43 3-52 (229)
243 PRK03359 putative electron tra 65.3 12 0.00025 34.4 4.8 42 98-141 101-148 (256)
244 PF07015 VirC1: VirC1 protein; 65.0 28 0.00061 31.2 7.0 39 8-46 3-42 (231)
245 PRK06849 hypothetical protein; 64.9 13 0.00027 36.6 5.5 37 4-44 2-38 (389)
246 PRK08506 replicative DNA helic 64.8 29 0.00063 35.1 8.0 46 7-52 193-238 (472)
247 PRK12342 hypothetical protein; 64.8 12 0.00026 34.2 4.8 41 99-141 99-145 (254)
248 PRK05595 replicative DNA helic 64.8 21 0.00046 35.8 7.1 45 8-52 203-248 (444)
249 TIGR00379 cobB cobyrinic acid 64.7 35 0.00076 34.3 8.6 106 9-142 2-120 (449)
250 TIGR02370 pyl_corrinoid methyl 64.6 17 0.00036 31.9 5.6 48 6-53 84-131 (197)
251 PF02844 GARS_N: Phosphoribosy 64.6 41 0.00088 25.8 6.9 88 7-137 1-91 (100)
252 PRK14478 nitrogenase molybdenu 64.4 55 0.0012 33.2 9.9 34 99-137 383-416 (475)
253 PF07429 Glyco_transf_56: 4-al 64.3 1E+02 0.0022 29.5 10.8 81 327-412 245-332 (360)
254 KOG0832 Mitochondrial/chloropl 64.2 6.6 0.00014 34.6 2.9 114 16-143 90-207 (251)
255 cd00672 CysRS_core catalytic c 63.9 36 0.00079 30.2 7.6 91 15-135 34-129 (213)
256 PRK06321 replicative DNA helic 63.5 33 0.00071 34.7 8.1 45 8-52 228-273 (472)
257 TIGR00460 fmt methionyl-tRNA f 63.4 64 0.0014 30.6 9.7 31 7-42 1-31 (313)
258 PRK09739 hypothetical protein; 63.4 18 0.00038 31.7 5.6 39 4-42 1-42 (199)
259 cd01968 Nitrogenase_NifE_I Nit 63.2 35 0.00075 33.8 8.2 35 99-138 346-380 (410)
260 COG0287 TyrA Prephenate dehydr 63.1 17 0.00038 33.7 5.6 42 6-52 3-44 (279)
261 TIGR02852 spore_dpaB dipicolin 62.9 9.1 0.0002 33.2 3.5 39 7-45 1-39 (187)
262 TIGR01862 N2-ase-Ialpha nitrog 62.7 36 0.00078 34.1 8.2 35 100-139 378-412 (443)
263 PRK06249 2-dehydropantoate 2-r 62.4 12 0.00027 35.4 4.7 43 1-50 1-43 (313)
264 PRK05986 cob(I)alamin adenolsy 62.2 1.1E+02 0.0023 26.7 11.8 100 6-122 22-126 (191)
265 PRK10964 ADP-heptose:LPS hepto 62.1 29 0.00062 33.0 7.2 132 267-412 178-321 (322)
266 PRK00784 cobyric acid synthase 61.8 77 0.0017 32.3 10.5 35 8-42 4-39 (488)
267 PLN02470 acetolactate synthase 61.8 26 0.00056 36.6 7.4 93 273-373 2-110 (585)
268 TIGR00639 PurN phosphoribosylg 61.7 1E+02 0.0022 26.8 9.8 103 7-141 1-110 (190)
269 PF01210 NAD_Gly3P_dh_N: NAD-d 61.3 4.6 0.0001 33.9 1.4 32 8-44 1-32 (157)
270 cd01715 ETF_alpha The electron 61.1 77 0.0017 26.8 9.0 42 98-141 72-116 (168)
271 PRK08760 replicative DNA helic 61.0 19 0.00041 36.4 5.9 44 8-51 231-275 (476)
272 PF06925 MGDG_synth: Monogalac 61.0 21 0.00045 30.3 5.5 47 93-141 73-125 (169)
273 PRK13982 bifunctional SbtC-lik 61.0 10 0.00022 38.1 3.9 40 5-44 255-306 (475)
274 PRK10867 signal recognition pa 60.3 44 0.00095 33.3 8.2 42 6-47 100-142 (433)
275 PRK12767 carbamoyl phosphate s 60.3 33 0.00072 32.5 7.4 32 6-43 1-34 (326)
276 PF03446 NAD_binding_2: NAD bi 60.2 8.2 0.00018 32.6 2.8 31 6-41 1-31 (163)
277 TIGR01501 MthylAspMutase methy 60.2 22 0.00048 28.9 5.1 46 7-52 2-47 (134)
278 TIGR03880 KaiC_arch_3 KaiC dom 60.1 27 0.00058 31.1 6.3 46 8-53 18-63 (224)
279 PRK07206 hypothetical protein; 60.1 35 0.00076 33.8 7.7 33 7-44 3-35 (416)
280 cd01121 Sms Sms (bacterial rad 59.6 39 0.00085 32.9 7.6 43 8-50 84-126 (372)
281 PRK08229 2-dehydropantoate 2-r 59.5 10 0.00022 36.4 3.7 34 6-44 2-35 (341)
282 cd01985 ETF The electron trans 58.6 66 0.0014 27.5 8.3 41 99-141 81-124 (181)
283 TIGR02195 heptsyl_trn_II lipop 58.2 64 0.0014 30.7 9.0 98 8-140 176-278 (334)
284 PF00318 Ribosomal_S2: Ribosom 58.0 45 0.00098 29.5 7.2 116 20-144 42-178 (211)
285 PRK06522 2-dehydropantoate 2-r 57.3 13 0.00028 35.0 3.9 40 7-51 1-41 (304)
286 COG0859 RfaF ADP-heptose:LPS h 57.3 1.2E+02 0.0025 29.1 10.5 99 7-141 176-279 (334)
287 TIGR02329 propionate_PrpR prop 57.3 50 0.0011 33.9 8.2 110 17-141 36-172 (526)
288 PRK13011 formyltetrahydrofolat 57.2 94 0.002 29.0 9.4 111 2-141 85-196 (286)
289 PRK12921 2-dehydropantoate 2-r 57.1 13 0.00028 35.0 3.9 39 7-50 1-39 (305)
290 COG1703 ArgK Putative periplas 56.9 57 0.0012 30.5 7.6 38 7-44 52-89 (323)
291 COG2099 CobK Precorrin-6x redu 56.8 31 0.00067 31.3 5.8 106 24-139 118-229 (257)
292 TIGR00064 ftsY signal recognit 56.2 64 0.0014 29.9 8.2 39 7-45 73-111 (272)
293 PLN02948 phosphoribosylaminoim 56.2 2.2E+02 0.0048 29.7 12.8 144 266-436 409-563 (577)
294 PRK05579 bifunctional phosphop 56.0 19 0.00041 35.4 4.9 46 3-49 3-48 (399)
295 TIGR03878 thermo_KaiC_2 KaiC d 56.0 70 0.0015 29.4 8.4 39 8-46 38-76 (259)
296 COG0041 PurE Phosphoribosylcar 55.8 1.2E+02 0.0026 25.2 11.4 138 269-435 4-154 (162)
297 PRK06027 purU formyltetrahydro 55.7 1E+02 0.0022 28.9 9.4 105 4-140 87-195 (286)
298 cd02069 methionine_synthase_B1 55.6 30 0.00065 30.8 5.6 47 6-52 88-134 (213)
299 COG0541 Ffh Signal recognition 55.4 46 0.001 32.8 7.1 44 4-47 98-141 (451)
300 TIGR00421 ubiX_pad polyprenyl 55.3 13 0.00029 32.0 3.3 42 8-50 1-42 (181)
301 PRK11823 DNA repair protein Ra 55.2 39 0.00085 33.9 7.0 43 8-50 82-124 (446)
302 COG0552 FtsY Signal recognitio 55.0 46 0.00099 31.6 6.8 49 6-54 139-187 (340)
303 COG2861 Uncharacterized protei 54.9 95 0.0021 28.0 8.4 44 94-138 133-179 (250)
304 COG2085 Predicted dinucleotide 53.9 19 0.0004 31.7 3.9 32 6-42 1-32 (211)
305 PRK05299 rpsB 30S ribosomal pr 53.7 46 0.00099 30.6 6.6 34 110-143 156-191 (258)
306 TIGR00416 sms DNA repair prote 53.3 69 0.0015 32.2 8.4 43 8-50 96-138 (454)
307 CHL00072 chlL photochlorophyll 53.2 25 0.00054 33.0 5.0 38 7-44 1-38 (290)
308 COG4088 Predicted nucleotide k 52.9 19 0.00041 31.6 3.7 37 6-42 1-37 (261)
309 PRK14477 bifunctional nitrogen 52.6 1.3E+02 0.0028 33.4 11.0 37 99-140 379-415 (917)
310 PRK10490 sensor protein KdpD; 52.2 63 0.0014 35.7 8.6 37 6-42 24-60 (895)
311 TIGR01286 nifK nitrogenase mol 52.1 63 0.0014 33.1 8.0 36 99-139 427-462 (515)
312 TIGR01425 SRP54_euk signal rec 52.0 65 0.0014 32.0 7.7 40 7-46 101-140 (429)
313 PRK13185 chlL protochlorophyll 51.9 25 0.00054 32.4 4.8 36 8-43 4-39 (270)
314 PRK13768 GTPase; Provisional 51.7 52 0.0011 30.1 6.8 37 8-44 4-40 (253)
315 PRK03767 NAD(P)H:quinone oxido 51.1 29 0.00062 30.4 4.8 37 6-42 1-39 (200)
316 PRK00005 fmt methionyl-tRNA fo 51.0 1.7E+02 0.0037 27.6 10.3 31 7-42 1-31 (309)
317 PF02776 TPP_enzyme_N: Thiamin 51.0 89 0.0019 26.4 7.8 63 348-412 67-145 (172)
318 TIGR00665 DnaB replicative DNA 50.8 61 0.0013 32.3 7.7 44 8-51 197-241 (434)
319 PRK10037 cell division protein 50.8 27 0.00058 31.8 4.8 39 6-44 1-40 (250)
320 PRK05636 replicative DNA helic 50.4 31 0.00068 35.1 5.5 43 8-50 267-310 (505)
321 PRK11064 wecC UDP-N-acetyl-D-m 50.3 22 0.00047 35.3 4.3 34 4-42 1-34 (415)
322 PRK12446 undecaprenyldiphospho 50.2 43 0.00093 32.4 6.3 27 343-371 91-120 (352)
323 PRK08591 acetyl-CoA carboxylas 50.1 80 0.0017 31.7 8.5 34 6-44 2-35 (451)
324 PF04493 Endonuclease_5: Endon 50.1 31 0.00067 30.4 4.7 44 98-141 76-126 (206)
325 PRK08462 biotin carboxylase; V 50.1 1.3E+02 0.0028 30.1 9.9 100 5-137 3-106 (445)
326 PRK09165 replicative DNA helic 49.8 56 0.0012 33.3 7.2 45 8-52 219-278 (497)
327 PRK05632 phosphate acetyltrans 49.8 2.4E+02 0.0051 30.2 12.1 35 8-42 4-39 (684)
328 PRK14501 putative bifunctional 49.8 46 0.00099 35.8 7.0 111 331-453 346-463 (726)
329 PRK08125 bifunctional UDP-gluc 49.7 1.2E+02 0.0027 32.1 10.1 38 102-141 68-106 (660)
330 PRK12825 fabG 3-ketoacyl-(acyl 49.7 33 0.00071 30.7 5.2 38 1-42 1-38 (249)
331 TIGR02655 circ_KaiC circadian 49.7 1.5E+02 0.0032 30.2 10.3 46 7-52 264-309 (484)
332 cd01124 KaiC KaiC is a circadi 49.6 43 0.00094 28.6 5.7 44 9-52 2-45 (187)
333 PRK13896 cobyrinic acid a,c-di 49.5 1.3E+02 0.0028 30.0 9.5 36 7-42 2-38 (433)
334 TIGR02700 flavo_MJ0208 archaeo 49.3 28 0.0006 31.5 4.5 43 8-51 1-45 (234)
335 PRK10586 putative oxidoreducta 49.3 1.3E+02 0.0027 29.3 9.3 112 7-144 6-122 (362)
336 COG0143 MetG Methionyl-tRNA sy 49.3 33 0.00071 35.3 5.4 40 6-45 4-53 (558)
337 TIGR00708 cobA cob(I)alamin ad 49.2 1.7E+02 0.0037 25.0 10.9 97 7-121 6-107 (173)
338 PF01075 Glyco_transf_9: Glyco 49.1 49 0.0011 29.8 6.2 99 7-141 106-211 (247)
339 COG1036 Archaeal flavoproteins 48.8 36 0.00078 28.4 4.5 48 5-54 7-57 (187)
340 PRK06395 phosphoribosylamine-- 48.7 1.2E+02 0.0026 30.4 9.3 32 6-42 2-33 (435)
341 TIGR03499 FlhF flagellar biosy 48.5 1E+02 0.0023 28.6 8.4 38 8-45 196-235 (282)
342 PRK11519 tyrosine kinase; Prov 48.5 3E+02 0.0064 29.7 12.8 39 6-44 525-565 (719)
343 PF01372 Melittin: Melittin; 48.2 4.1 8.8E-05 21.8 -0.6 18 354-371 1-18 (26)
344 CHL00067 rps2 ribosomal protei 48.2 66 0.0014 28.9 6.7 34 110-143 160-195 (230)
345 PRK04148 hypothetical protein; 48.1 49 0.0011 26.9 5.2 31 6-42 17-47 (134)
346 PRK00094 gpsA NAD(P)H-dependen 48.1 19 0.00042 34.2 3.5 32 6-42 1-32 (325)
347 cd02032 Bchl_like This family 47.9 31 0.00067 31.7 4.7 37 7-43 1-37 (267)
348 TIGR00853 pts-lac PTS system, 47.8 50 0.0011 25.0 5.0 39 4-42 1-39 (95)
349 PF02702 KdpD: Osmosensitive K 47.6 34 0.00073 30.0 4.4 37 6-42 5-41 (211)
350 PRK06756 flavodoxin; Provision 47.5 35 0.00077 28.1 4.6 37 6-42 1-38 (148)
351 cd03115 SRP The signal recogni 47.4 1.2E+02 0.0026 25.5 8.1 38 9-46 3-40 (173)
352 COG1066 Sms Predicted ATP-depe 47.4 36 0.00077 33.3 5.0 41 8-49 95-135 (456)
353 KOG0780 Signal recognition par 47.4 61 0.0013 31.5 6.4 41 6-46 101-141 (483)
354 TIGR01281 DPOR_bchL light-inde 47.2 33 0.00071 31.6 4.8 38 7-44 1-38 (268)
355 TIGR01861 ANFD nitrogenase iro 47.2 1.1E+02 0.0023 31.4 8.7 31 103-138 392-422 (513)
356 cd02065 B12-binding_like B12 b 47.2 42 0.00092 26.4 4.9 43 9-51 2-44 (125)
357 PF09001 DUF1890: Domain of un 46.9 27 0.00059 28.3 3.5 31 19-49 12-42 (139)
358 TIGR01011 rpsB_bact ribosomal 46.9 71 0.0015 28.7 6.6 34 110-143 154-189 (225)
359 PLN02939 transferase, transfer 46.6 33 0.00072 37.5 5.2 39 5-43 480-524 (977)
360 PF00862 Sucrose_synth: Sucros 46.5 21 0.00045 35.8 3.3 54 86-142 379-434 (550)
361 COG0240 GpsA Glycerol-3-phosph 46.5 2.7E+02 0.0058 26.6 11.5 33 6-43 1-33 (329)
362 PF05728 UPF0227: Uncharacteri 46.4 55 0.0012 28.4 5.7 45 99-143 47-92 (187)
363 cd06533 Glyco_transf_WecG_TagA 46.2 1.8E+02 0.004 24.6 9.6 90 23-137 35-129 (171)
364 PRK13236 nitrogenase reductase 46.1 43 0.00092 31.5 5.4 44 1-44 1-44 (296)
365 TIGR01380 glut_syn glutathione 45.8 34 0.00073 32.5 4.7 38 7-44 1-41 (312)
366 PF06564 YhjQ: YhjQ protein; 45.7 41 0.00088 30.5 4.9 37 6-42 1-38 (243)
367 COG0299 PurN Folate-dependent 45.7 2.1E+02 0.0045 25.0 9.3 135 266-428 50-187 (200)
368 TIGR02699 archaeo_AfpA archaeo 45.4 33 0.00072 29.3 4.1 42 8-51 1-44 (174)
369 PF02571 CbiJ: Precorrin-6x re 45.3 95 0.0021 28.3 7.3 103 23-139 118-226 (249)
370 PRK00771 signal recognition pa 45.3 1.2E+02 0.0025 30.4 8.5 40 6-45 95-134 (437)
371 PRK07236 hypothetical protein; 44.6 41 0.00088 32.9 5.3 37 1-42 1-37 (386)
372 TIGR00655 PurU formyltetrahydr 44.6 1.8E+02 0.0039 27.1 9.1 108 5-141 83-191 (280)
373 PRK07773 replicative DNA helic 44.6 79 0.0017 34.9 7.9 45 8-52 219-264 (886)
374 PRK14618 NAD(P)H-dependent gly 44.3 29 0.00062 33.2 4.0 33 5-42 3-35 (328)
375 TIGR02113 coaC_strep phosphopa 44.1 26 0.00057 30.1 3.3 37 8-45 2-38 (177)
376 KOG3062 RNA polymerase II elon 44.0 51 0.0011 29.4 5.0 37 6-42 1-38 (281)
377 PF00448 SRP54: SRP54-type pro 43.9 61 0.0013 28.3 5.7 39 8-46 3-41 (196)
378 PF07355 GRDB: Glycine/sarcosi 43.5 42 0.0009 32.0 4.7 42 97-140 68-119 (349)
379 TIGR02853 spore_dpaA dipicolin 43.5 2.1E+02 0.0045 26.8 9.5 106 266-393 151-259 (287)
380 PRK14569 D-alanyl-alanine synt 43.3 49 0.0011 31.0 5.4 38 5-42 2-43 (296)
381 TIGR00640 acid_CoA_mut_C methy 43.2 63 0.0014 26.2 5.3 44 6-49 2-45 (132)
382 PRK10916 ADP-heptose:LPS hepto 43.1 1.4E+02 0.003 28.7 8.6 102 8-140 182-288 (348)
383 PF08433 KTI12: Chromatin asso 43.0 2.1E+02 0.0046 26.4 9.4 104 6-145 1-110 (270)
384 cd06559 Endonuclease_V Endonuc 42.5 28 0.0006 30.8 3.3 43 99-141 81-130 (208)
385 COG0059 IlvC Ketol-acid reduct 42.5 59 0.0013 30.4 5.4 34 6-44 18-51 (338)
386 cd07035 TPP_PYR_POX_like Pyrim 42.4 1.9E+02 0.0042 23.7 9.1 26 348-373 62-93 (155)
387 cd08171 GlyDH-like2 Glycerol d 42.3 1.5E+02 0.0032 28.6 8.6 39 103-143 72-113 (345)
388 TIGR00521 coaBC_dfp phosphopan 42.2 33 0.00071 33.7 4.1 43 6-49 3-45 (390)
389 cd06320 PBP1_allose_binding Pe 42.1 2.1E+02 0.0047 25.8 9.5 35 8-42 1-37 (275)
390 cd01421 IMPCH Inosine monophos 42.0 1.4E+02 0.0031 25.8 7.3 86 20-121 10-101 (187)
391 cd08551 Fe-ADH iron-containing 41.7 1.8E+02 0.0039 28.3 9.2 22 23-44 11-33 (370)
392 PRK14619 NAD(P)H-dependent gly 41.7 33 0.00071 32.4 4.0 33 5-42 3-35 (308)
393 COG1440 CelA Phosphotransferas 41.7 61 0.0013 24.8 4.5 37 6-42 1-37 (102)
394 PRK00421 murC UDP-N-acetylmura 41.6 35 0.00076 34.4 4.4 38 1-42 2-39 (461)
395 PF02826 2-Hacid_dh_C: D-isome 41.5 1.5E+02 0.0032 25.3 7.7 101 265-408 35-142 (178)
396 PF05693 Glycogen_syn: Glycoge 41.3 93 0.002 32.3 7.0 75 335-411 461-541 (633)
397 PRK05246 glutathione synthetas 40.8 44 0.00095 31.7 4.7 39 6-44 1-42 (316)
398 PRK08293 3-hydroxybutyryl-CoA 40.5 30 0.00066 32.3 3.5 33 5-42 2-34 (287)
399 TIGR02398 gluc_glyc_Psyn gluco 40.5 2.1E+02 0.0045 29.1 9.5 109 330-453 365-483 (487)
400 cd02034 CooC The accessory pro 40.5 69 0.0015 25.2 5.0 37 8-44 1-37 (116)
401 COG2084 MmsB 3-hydroxyisobutyr 40.4 50 0.0011 30.8 4.7 32 7-43 1-32 (286)
402 PRK02910 light-independent pro 40.3 42 0.00092 34.4 4.7 35 100-139 353-387 (519)
403 PRK13604 luxD acyl transferase 40.2 59 0.0013 30.7 5.2 36 6-41 36-71 (307)
404 TIGR01007 eps_fam capsular exo 40.1 67 0.0015 28.0 5.5 38 7-44 17-56 (204)
405 PRK09590 celB cellobiose phosp 40.1 54 0.0012 25.3 4.2 37 6-42 1-37 (104)
406 PRK00750 lysK lysyl-tRNA synth 40.0 1.2E+02 0.0025 31.2 7.7 35 17-51 39-76 (510)
407 PRK00881 purH bifunctional pho 40.0 1.7E+02 0.0036 29.8 8.5 124 6-148 4-155 (513)
408 PRK08155 acetolactate synthase 39.9 78 0.0017 32.9 6.7 82 283-372 14-109 (564)
409 TIGR00750 lao LAO/AO transport 39.9 2.4E+02 0.0053 26.4 9.5 39 6-44 34-72 (300)
410 cd02040 NifH NifH gene encodes 39.8 51 0.0011 30.2 4.9 38 7-44 2-39 (270)
411 PRK06703 flavodoxin; Provision 39.7 52 0.0011 27.1 4.5 37 6-42 1-38 (151)
412 PRK13234 nifH nitrogenase redu 39.6 59 0.0013 30.5 5.3 39 6-44 4-42 (295)
413 TIGR02201 heptsyl_trn_III lipo 39.6 2.3E+02 0.0049 27.1 9.5 28 111-140 260-287 (344)
414 TIGR03877 thermo_KaiC_1 KaiC d 39.5 1.9E+02 0.0042 26.0 8.5 45 7-51 22-66 (237)
415 KOG0081 GTPase Rab27, small G 39.0 67 0.0015 26.8 4.7 35 109-143 122-166 (219)
416 PRK05784 phosphoribosylamine-- 38.9 1.6E+02 0.0034 30.0 8.4 31 7-42 1-33 (486)
417 TIGR00715 precor6x_red precorr 38.9 1.9E+02 0.0041 26.5 8.3 38 100-139 188-230 (256)
418 PRK00207 sulfur transfer compl 38.7 57 0.0012 26.3 4.3 36 7-42 1-40 (128)
419 cd01976 Nitrogenase_MoFe_alpha 38.7 37 0.00081 33.8 3.9 36 99-139 359-394 (421)
420 PRK05579 bifunctional phosphop 38.6 2.6E+02 0.0057 27.6 9.7 136 266-412 6-182 (399)
421 COG3349 Uncharacterized conser 38.4 31 0.00068 34.6 3.2 33 7-44 1-33 (485)
422 PF09334 tRNA-synt_1g: tRNA sy 38.3 25 0.00053 34.6 2.6 29 17-45 16-47 (391)
423 PRK12475 thiamine/molybdopteri 38.2 2.1E+02 0.0045 27.6 8.8 32 6-42 24-56 (338)
424 TIGR01278 DPOR_BchB light-inde 38.2 44 0.00095 34.2 4.4 36 100-140 355-390 (511)
425 cd03789 GT1_LPS_heptosyltransf 38.2 1.1E+02 0.0023 28.3 6.8 87 21-141 140-226 (279)
426 PRK06067 flagellar accessory p 38.1 76 0.0016 28.4 5.6 44 8-51 27-70 (234)
427 PRK00885 phosphoribosylamine-- 38.0 1.3E+02 0.0028 29.9 7.7 29 7-40 1-30 (420)
428 PRK07178 pyruvate carboxylase 38.0 1.7E+02 0.0038 29.5 8.7 97 7-137 3-103 (472)
429 PRK13230 nitrogenase reductase 37.9 59 0.0013 30.1 5.0 39 6-44 1-39 (279)
430 TIGR02114 coaB_strep phosphopa 37.9 31 0.00067 31.0 2.9 19 24-42 29-47 (227)
431 PF01695 IstB_IS21: IstB-like 37.6 59 0.0013 27.9 4.5 45 7-51 48-92 (178)
432 COG0151 PurD Phosphoribosylami 37.6 1.8E+02 0.004 28.6 8.1 34 7-45 1-34 (428)
433 PF02585 PIG-L: GlcNAc-PI de-N 37.6 1.7E+02 0.0038 23.1 7.1 21 97-119 88-108 (128)
434 PRK06111 acetyl-CoA carboxylas 37.5 1.8E+02 0.004 29.0 8.8 33 7-44 3-35 (450)
435 cd01141 TroA_d Periplasmic bin 37.4 52 0.0011 28.1 4.3 39 99-140 60-100 (186)
436 cd02072 Glm_B12_BD B12 binding 37.3 69 0.0015 25.8 4.5 45 8-52 1-45 (128)
437 cd01981 Pchlide_reductase_B Pc 37.3 51 0.0011 32.9 4.7 35 101-140 362-396 (430)
438 PF00148 Oxidored_nitro: Nitro 37.3 2.3E+02 0.005 27.8 9.3 96 7-140 272-367 (398)
439 PLN00141 Tic62-NAD(P)-related 37.3 70 0.0015 28.9 5.3 36 3-42 14-49 (251)
440 PRK10427 putative PTS system f 37.2 75 0.0016 25.0 4.6 37 6-42 2-41 (114)
441 PRK06129 3-hydroxyacyl-CoA deh 37.2 33 0.00072 32.4 3.2 33 5-42 1-33 (308)
442 CHL00076 chlB photochlorophyll 37.2 50 0.0011 33.8 4.6 35 100-139 365-399 (513)
443 PRK10416 signal recognition pa 37.2 2.2E+02 0.0047 27.1 8.7 39 7-45 115-153 (318)
444 TIGR00345 arsA arsenite-activa 37.1 1.3E+02 0.0029 27.9 7.2 22 24-45 3-24 (284)
445 PF13450 NAD_binding_8: NAD(P) 37.0 42 0.00091 23.4 2.9 19 24-42 9-27 (68)
446 COG0771 MurD UDP-N-acetylmuram 36.9 55 0.0012 32.7 4.7 36 5-45 6-41 (448)
447 COG2086 FixA Electron transfer 36.7 65 0.0014 29.6 4.8 42 98-141 100-147 (260)
448 TIGR01005 eps_transp_fam exopo 36.6 3.5E+02 0.0075 29.3 11.2 39 7-45 546-586 (754)
449 PRK13010 purU formyltetrahydro 36.5 2.8E+02 0.0062 25.9 9.1 108 5-141 92-200 (289)
450 PRK11780 isoprenoid biosynthes 36.3 70 0.0015 28.5 4.9 38 6-43 1-42 (217)
451 PRK14620 NAD(P)H-dependent gly 36.2 37 0.0008 32.3 3.4 31 7-42 1-31 (326)
452 cd06318 PBP1_ABC_sugar_binding 36.1 3.3E+02 0.0072 24.6 10.2 37 101-140 48-88 (282)
453 TIGR00696 wecB_tagA_cpsF bacte 36.1 2.8E+02 0.006 23.8 8.8 89 23-137 37-130 (177)
454 PRK09423 gldA glycerol dehydro 36.0 1.5E+02 0.0032 28.8 7.6 41 101-143 76-119 (366)
455 PLN02735 carbamoyl-phosphate s 35.8 3E+02 0.0065 31.4 10.7 40 5-44 22-67 (1102)
456 COG3195 Uncharacterized protei 35.8 1.5E+02 0.0033 24.9 6.2 74 356-430 88-164 (176)
457 PRK10499 PTS system N,N'-diace 35.6 89 0.0019 24.2 4.8 37 5-41 2-38 (106)
458 PRK13235 nifH nitrogenase redu 35.6 63 0.0014 29.9 4.8 38 7-44 2-39 (274)
459 TIGR00959 ffh signal recogniti 35.6 1.5E+02 0.0033 29.6 7.5 40 8-47 101-141 (428)
460 TIGR00514 accC acetyl-CoA carb 35.5 2.8E+02 0.0061 27.8 9.7 33 6-43 2-34 (449)
461 cd00316 Oxidoreductase_nitroge 35.4 1.4E+02 0.0029 29.3 7.4 37 99-140 338-374 (399)
462 PRK01372 ddl D-alanine--D-alan 35.4 59 0.0013 30.5 4.6 37 7-43 5-45 (304)
463 PRK10818 cell division inhibit 35.1 62 0.0013 29.7 4.6 39 6-44 1-41 (270)
464 PRK13054 lipid kinase; Reviewe 35.1 85 0.0018 29.5 5.6 38 5-42 2-39 (300)
465 COG0163 UbiX 3-polyprenyl-4-hy 35.1 89 0.0019 26.8 4.9 46 6-52 2-47 (191)
466 TIGR00467 lysS_arch lysyl-tRNA 35.0 42 0.00092 34.2 3.7 35 18-52 38-72 (515)
467 PF03721 UDPG_MGDP_dh_N: UDP-g 34.9 55 0.0012 28.3 4.0 38 7-51 1-38 (185)
468 PRK09841 cryptic autophosphory 34.8 3.7E+02 0.0079 29.0 10.9 39 6-44 530-570 (726)
469 PRK10422 lipopolysaccharide co 34.7 1.2E+02 0.0027 29.1 6.8 28 111-140 262-289 (352)
470 PRK06719 precorrin-2 dehydroge 34.7 61 0.0013 27.2 4.0 38 7-50 14-51 (157)
471 TIGR03026 NDP-sugDHase nucleot 34.6 52 0.0011 32.6 4.2 31 7-42 1-31 (411)
472 PRK14476 nitrogenase molybdenu 34.4 2.3E+02 0.0049 28.6 8.7 26 111-139 371-396 (455)
473 PRK00170 azoreductase; Reviewe 34.4 81 0.0017 27.4 5.1 37 6-42 1-43 (201)
474 COG1763 MobB Molybdopterin-gua 34.3 83 0.0018 26.5 4.7 39 6-44 1-40 (161)
475 PRK13886 conjugal transfer pro 34.1 92 0.002 28.2 5.3 39 6-44 1-41 (241)
476 COG1090 Predicted nucleoside-d 34.0 2.1E+02 0.0045 26.6 7.4 20 24-43 12-31 (297)
477 PRK06603 enoyl-(acyl carrier p 34.0 84 0.0018 28.6 5.3 41 1-42 1-42 (260)
478 PF07302 AroM: AroM protein; 34.0 2.5E+02 0.0054 25.1 7.8 30 111-140 178-210 (221)
479 PRK13869 plasmid-partitioning 33.8 70 0.0015 31.6 5.0 38 7-44 121-160 (405)
480 COG1192 Soj ATPases involved i 33.7 62 0.0014 29.5 4.4 38 8-45 4-43 (259)
481 COG0569 TrkA K+ transport syst 33.4 50 0.0011 29.6 3.5 99 7-145 1-105 (225)
482 COG2120 Uncharacterized protei 33.3 74 0.0016 28.8 4.7 39 4-42 8-46 (237)
483 COG0504 PyrG CTP synthase (UTP 33.0 80 0.0017 31.6 5.0 38 7-44 1-41 (533)
484 PRK07819 3-hydroxybutyryl-CoA 33.0 45 0.00097 31.2 3.3 33 5-42 4-36 (286)
485 PRK12374 putative dithiobiotin 32.9 79 0.0017 28.4 4.8 35 8-42 4-39 (231)
486 TIGR01915 npdG NADPH-dependent 32.8 43 0.00094 29.8 3.1 31 7-42 1-32 (219)
487 PF01081 Aldolase: KDPG and KH 32.8 3.4E+02 0.0073 23.8 10.7 45 98-145 70-114 (196)
488 PF06418 CTP_synth_N: CTP synt 32.7 57 0.0012 29.8 3.7 38 7-44 1-41 (276)
489 CHL00175 minD septum-site dete 32.6 86 0.0019 29.0 5.2 41 4-44 12-54 (281)
490 TIGR01917 gly_red_sel_B glycin 32.6 75 0.0016 31.2 4.7 41 97-139 64-114 (431)
491 TIGR01918 various_sel_PB selen 32.6 76 0.0016 31.2 4.7 40 98-139 65-114 (431)
492 PRK11914 diacylglycerol kinase 32.5 1.8E+02 0.0039 27.3 7.4 83 266-372 9-95 (306)
493 COG2210 Peroxiredoxin family p 32.4 93 0.002 25.3 4.4 33 10-42 7-39 (137)
494 PF04558 tRNA_synt_1c_R1: Glut 32.3 75 0.0016 26.9 4.2 32 377-413 101-132 (164)
495 PLN02285 methionyl-tRNA formyl 32.3 4.6E+02 0.01 25.1 10.1 40 100-141 84-124 (334)
496 PRK12726 flagellar biosynthesi 32.0 3.5E+02 0.0076 26.6 9.1 38 8-45 207-245 (407)
497 PRK06027 purU formyltetrahydro 31.8 4.2E+02 0.009 24.8 9.5 115 287-427 156-272 (286)
498 PF02780 Transketolase_C: Tran 31.7 79 0.0017 25.0 4.2 35 6-42 9-43 (124)
499 cd03114 ArgK-like The function 31.7 2.9E+02 0.0063 22.7 10.5 35 9-43 2-36 (148)
500 PF03720 UDPG_MGDP_dh_C: UDP-g 31.6 57 0.0012 25.1 3.2 22 21-42 17-38 (106)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-62 Score=480.90 Aligned_cols=429 Identities=36% Similarity=0.592 Sum_probs=330.7
Q ss_pred CCC-CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCC
Q 012587 1 MEK-QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDH 79 (460)
Q Consensus 1 ~~~-~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (460)
||. .+..||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ... ..++.|..+|++++++.
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~~~--------~~~i~~~~ip~glp~~~ 70 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--SDD--------FTDFQFVTIPESLPESD 70 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--ccC--------CCCeEEEeCCCCCCccc
Confidence 664 3456999999999999999999999999999999999998764211 100 23589999998887642
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcC----CCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhcccc
Q 012587 80 PRTPDKFPELVDSLNCATPPLLKEMVSDS----KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (460)
.+. .....++..+...+.+.++++++++ ..++++||+|.+..|+..+|+++|||++.++++++.....+.+++..
T Consensus 71 ~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 71 FKN-LGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred ccc-cCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 221 2334555556555677777777764 23579999999999999999999999999999998876655443211
Q ss_pred ccC-------C-------CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhc
Q 012587 156 IDA-------G-------ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNH 221 (460)
Q Consensus 156 ~~~-------~-------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~ 221 (460)
... . .+|....++..+++.... .........+... ....+++.+++|+|++||+..++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~--~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~- 225 (451)
T PLN02410 150 YANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHW--ASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQ- 225 (451)
T ss_pred HhccCCCCccccccCccccCCCCCCCChHHCcchhc--CCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHh-
Confidence 110 0 011111133344443221 1112222322222 234678899999999999999999986
Q ss_pred CC-CceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEE
Q 012587 222 SC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFL 300 (460)
Q Consensus 222 ~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 300 (460)
.. ++++.|||+........ ..+..+.++.+|||.+++++||||||||....+.+.+..++.+|+..+.+||
T Consensus 226 ~~~~~v~~vGpl~~~~~~~~--------~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~Fl 297 (451)
T PLN02410 226 QLQIPVYPIGPLHLVASAPT--------SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFL 297 (451)
T ss_pred ccCCCEEEecccccccCCCc--------cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeE
Confidence 55 68999999975422100 1122334678999998889999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhh
Q 012587 301 WVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQIN 380 (460)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 380 (460)
|+++.+...+......+|++|.++.++|.++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.|
T Consensus 298 Wv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 377 (451)
T PLN02410 298 WVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVN 377 (451)
T ss_pred EEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHH
Confidence 99974321100111247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhceeeeecCCcchHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012587 381 SRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE-RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKM 452 (460)
Q Consensus 381 a~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 452 (460)
|+++++.+|+|+.+.+.+++++|+++|+++|.+ ++.+||++|+++++++++++.+||+|.+++++||+.+..
T Consensus 378 a~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 378 ARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999976679999997789999999999999974 356899999999999999999999999999999998763
No 2
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-62 Score=478.89 Aligned_cols=425 Identities=29% Similarity=0.538 Sum_probs=328.2
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
|++.+..||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... . .++++|..+|++++.+.
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~---~~~i~~v~lp~g~~~~~- 72 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----P---KLGITFMSISDGQDDDP- 72 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----C---CCCEEEEECCCCCCCCc-
Confidence 566556799999999999999999999999999999999999887766544311 0 23589999988765432
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcC-C-CCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccC
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDS-K-SPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA 158 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
..++..+...+...+.+.++++++.+ . .++++||+|.+..|+..+|+++|||++.++++++.......+++.....
T Consensus 73 --~~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 73 --PRDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred --cccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 22344444555445788888888876 2 2348999999999999999999999999999988766655443321111
Q ss_pred C---------------CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHh----
Q 012587 159 G---------------ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIR---- 219 (460)
Q Consensus 159 ~---------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~---- 219 (460)
+ ..|....++..+++.++............+.+......+++.+++|||++||+..++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 230 (448)
T PLN02562 151 GLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYN 230 (448)
T ss_pred cccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhc
Confidence 0 011111134455554432211122334455555555677889999999999998777553
Q ss_pred -hcCCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcc-cCCHHHHHHHHHHHhhCCC
Q 012587 220 -NHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIA-VMSRDQLIEFYYGLVHSKK 297 (460)
Q Consensus 220 -~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~~~~al~~~~~ 297 (460)
+ ..|+++.|||+........ ...+.+..+.++.+||+.++++++|||||||+. ..+.++++.++.+++..+.
T Consensus 231 ~~-~~~~v~~iGpl~~~~~~~~-----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~ 304 (448)
T PLN02562 231 NG-QNPQILQIGPLHNQEATTI-----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGR 304 (448)
T ss_pred cc-cCCCEEEecCccccccccc-----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCC
Confidence 3 4578999999976432100 000122334567799998877899999999986 5688999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccc
Q 012587 298 SFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQ 377 (460)
Q Consensus 298 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ 377 (460)
+|||+++.+ ....+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||
T Consensus 305 ~fiW~~~~~------~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 378 (448)
T PLN02562 305 PFIWVLNPV------WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQ 378 (448)
T ss_pred CEEEEEcCC------chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccch
Confidence 999998642 11257888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012587 378 QINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 451 (460)
Q Consensus 378 ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 451 (460)
+.||+++++.+|+|+.+ ++.+.++|.++|+++|.+ ++||+||++++++++++ .+||+|.+++++||++++
T Consensus 379 ~~na~~~~~~~g~g~~~-~~~~~~~l~~~v~~~l~~--~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 379 FVNCAYIVDVWKIGVRI-SGFGQKEVEEGLRKVMED--SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHHHHHhCceeEe-CCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99999997557999888 568999999999999988 89999999999999887 667899999999999863
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.1e-61 Score=474.76 Aligned_cols=445 Identities=29% Similarity=0.545 Sum_probs=339.9
Q ss_pred CCCCC-CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccc--cc--cccccCCCCceEEecCCCC
Q 012587 1 MEKQD-HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSS--DA--FSRYMQIPGFQFKTLTDGL 75 (460)
Q Consensus 1 ~~~~~-~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~ 75 (460)
|++++ ..||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+... +. ... ....+.|..+|+++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~--~~~~i~~~~~pdgl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPV--GDGFIRFEFFEDGW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccC--CCCeEEEeeCCCCC
Confidence 56532 3699999999999999999999999999999999999877665543110 00 000 01126777778777
Q ss_pred CCCCCCCCCChHHHHHHHHhhCcHHHHHHHHcC--CCCc-cEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhc
Q 012587 76 PRDHPRTPDKFPELVDSLNCATPPLLKEMVSDS--KSPV-NCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCI 152 (460)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (460)
+++... ..++..++..+...+.+.++++++.+ ..+| ++||+|.++.|+..+|+++|||++.++++++.....+.++
T Consensus 79 p~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 79 AEDDPR-RQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred CCCccc-ccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 765321 23455566666555778888888765 1244 9999999999999999999999999999999888776665
Q ss_pred ccc---ccCC-------CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcC
Q 012587 153 PDI---IDAG-------ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS 222 (460)
Q Consensus 153 ~~~---~~~~-------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~ 222 (460)
+.. .+.. .+|...-++..+++.++............+.+......+++.+++|||++||+..++.++. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~-~ 236 (480)
T PLN02555 158 YHGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSK-L 236 (480)
T ss_pred hhcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhh-C
Confidence 321 0100 0111112455666655432222334444455555556778899999999999999988876 5
Q ss_pred CCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEE
Q 012587 223 CPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWV 302 (460)
Q Consensus 223 ~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 302 (460)
.+ ++.|||+........ .. ..+..+..++++.+||+.++++++|||||||+...+.+++..++.+++..+.+|||+
T Consensus 237 ~~-v~~iGPl~~~~~~~~-~~--~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~ 312 (480)
T PLN02555 237 CP-IKPVGPLFKMAKTPN-SD--VKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWV 312 (480)
T ss_pred CC-EEEeCcccCcccccc-cc--ccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 55 999999975321100 00 001223445679999998878899999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHH
Q 012587 303 IRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSR 382 (460)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~ 382 (460)
++.....+......+|+++.++.++|+++++|+||.+||.|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 313 ~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~ 392 (480)
T PLN02555 313 MRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAV 392 (480)
T ss_pred EecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHH
Confidence 87421000001124788888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceeeeec------CCcchHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 012587 383 FVGEVWKLGLDIK------DLCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 453 (460)
Q Consensus 383 ~~~e~~G~g~~~~------~~~~~~~l~~~i~~~l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 453 (460)
++++++|+|+.+. +.++.++|.++|+++|. ++|.++|+||++|++..++++.+||+|.+++++||+++...
T Consensus 393 ~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 393 YLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 9987779999993 35899999999999996 55789999999999999999999999999999999999866
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-61 Score=471.45 Aligned_cols=430 Identities=29% Similarity=0.531 Sum_probs=331.9
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
|+++ ..||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.... .++++|..+|++++++..
T Consensus 1 ~~~~-~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~---------~~~i~~~~ipdglp~~~~ 70 (449)
T PLN02173 1 MEKM-RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP---------SSPISIATISDGYDQGGF 70 (449)
T ss_pred CCCC-CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC---------CCCEEEEEcCCCCCCccc
Confidence 5664 369999999999999999999999999999999999987766553221 235999999988886322
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcC--CCCc-cEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhcccccc
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDS--KSPV-NCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIID 157 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 157 (460)
+...++..++..+...+.+.++++++.+ ..+| ++||+|.+..|+..+|+++|||++.++++++.....+.+ .....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~~ 149 (449)
T PLN02173 71 SSAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYINN 149 (449)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhcc
Confidence 2233455666666666788888888875 2245 999999999999999999999999999987776544332 11100
Q ss_pred -CC--CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCcccc
Q 012587 158 -AG--ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNA 234 (460)
Q Consensus 158 -~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~ 234 (460)
.. ..|....++..+++.++............+.+......+++.+++|||++||+..++.++. . ++++.|||+..
T Consensus 150 ~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~-~-~~v~~VGPl~~ 227 (449)
T PLN02173 150 GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK-V-CPVLTIGPTVP 227 (449)
T ss_pred CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-c-CCeeEEcccCc
Confidence 00 0121112456677665532222333444455555666788999999999999999988875 4 47999999974
Q ss_pred ccc--cCCCccccCCCCcc--ccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCC
Q 012587 235 HLK--VRIPEKTYSSSSLW--KIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISG 310 (460)
Q Consensus 235 ~~~--~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 310 (460)
... ..........++.| +.++++.+||+.++++++|||||||....+.+++..++.++ .+.+|+|+++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~--- 302 (449)
T PLN02173 228 SMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE--- 302 (449)
T ss_pred hhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc---
Confidence 311 00000000001222 23456889999888899999999999999999999999999 6778999997421
Q ss_pred CCCCCCCchHHHHHh-cCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhc
Q 012587 311 KDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWK 389 (460)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G 389 (460)
...+|+++.++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|.++||+.||+++++.+|
T Consensus 303 ---~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g 379 (449)
T PLN02173 303 ---ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWK 379 (449)
T ss_pred ---hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhC
Confidence 124778887776 6889999999999999999999999999999999999999999999999999999999986679
Q ss_pred eeeeec-C----CcchHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012587 390 LGLDIK-D----LCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 451 (460)
Q Consensus 390 ~g~~~~-~----~~~~~~l~~~i~~~l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 451 (460)
+|+.+. . ..+.++|+++|+++|. +++.++|+||++++++.++++.+||++.+++++|++.+.
T Consensus 380 ~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 380 VGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred ceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 998885 2 2589999999999997 456789999999999999999999999999999999874
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-60 Score=465.16 Aligned_cols=433 Identities=25% Similarity=0.455 Sum_probs=323.4
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCccchh-HHhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rG--H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
|+..||+++|+|++||++|++.||+.|+.+| ..|||++++.+.. .+.......... .++++|..+|++......
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASS---QPFVRFIDVPELEEKPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCC---CCCeEEEEeCCCCCCCcc
Confidence 3456999999999999999999999999998 9999999977652 221111000000 235899999864321110
Q ss_pred CCCCChHHHHHHHHhhC----cHHHHHHHHcC--CCCc-cEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhcc
Q 012587 81 RTPDKFPELVDSLNCAT----PPLLKEMVSDS--KSPV-NCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIP 153 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~----~~~l~~~~~~~--~~~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 153 (460)
....+....+......+ .+.+.+++++. +.+| ++||+|.++.|+..+|+++|||++.++++++.......+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 78 GGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred ccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 11233444443344344 33455555543 1234 89999999999999999999999999999988777665553
Q ss_pred cccc-CC-----------CCCCC-CCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhh
Q 012587 154 DIID-AG-----------ELPIK-GFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRN 220 (460)
Q Consensus 154 ~~~~-~~-----------~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~ 220 (460)
.... .. .+|.. .-++..+++.++.... . ...+.+......+++.+++|++++||++.++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 158 DRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred hccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 2211 00 01110 1144455554332111 1 23333444456778999999999999999888843
Q ss_pred -cCCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcE
Q 012587 221 -HSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSF 299 (460)
Q Consensus 221 -~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 299 (460)
...|+++.|||+........++ ...+ .++++.+||+.++++++|||||||....+.+++++++.+++.++++|
T Consensus 234 ~~~~p~v~~VGPl~~~~~~~~~~-----~~~~-~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 234 EQNYPSVYAVGPIFDLKAQPHPE-----QDLA-RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred ccCCCcEEEecCCcccccCCCCc-----cccc-hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 0458899999997643211110 0111 23579999998888899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchh
Q 012587 300 LWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQI 379 (460)
Q Consensus 300 i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~ 379 (460)
||+++.+... ..+.+|+++.++.++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 308 lW~~r~~~~~---~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~ 384 (468)
T PLN02207 308 LWSLRTEEVT---NDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQL 384 (468)
T ss_pred EEEEeCCCcc---ccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchh
Confidence 9999743210 1225788999989999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhceeeeec--------CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012587 380 NSRFVGEVWKLGLDIK--------DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 451 (460)
Q Consensus 380 na~~~~e~~G~g~~~~--------~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 451 (460)
||+++++.+|+|+.+. +..+.++|+++|+++|.+++++||+||+++++.+++++.+||+|.+++++||+++.
T Consensus 385 Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 385 NAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred hHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9998876689999762 23599999999999997444899999999999999999999999999999999987
Q ss_pred h
Q 012587 452 M 452 (460)
Q Consensus 452 ~ 452 (460)
.
T Consensus 465 ~ 465 (468)
T PLN02207 465 G 465 (468)
T ss_pred h
Confidence 5
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.4e-60 Score=467.96 Aligned_cols=441 Identities=25% Similarity=0.393 Sum_probs=328.7
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCC----CCCCCC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD----GLPRDH 79 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 79 (460)
....||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+...... .+++++..+|. +++++.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~-------~~~i~~~~lp~P~~~~lPdG~ 79 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK-------HPSIETLVLPFPSHPSIPSGV 79 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc-------CCCeeEEeCCCCCcCCCCCCC
Confidence 3457999999999999999999999999999999999999888776543210 22466655431 344332
Q ss_pred CCC---CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccc
Q 012587 80 PRT---PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDII 156 (460)
Q Consensus 80 ~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (460)
... ..+....+......+.+.+.+++++...+|++||+|.+..|+..+|+++|||++.++++++.....+.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 80 ENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred cChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 211 11112223333334566677777764336799999999999999999999999999999999888776654211
Q ss_pred cCC-------------CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC
Q 012587 157 DAG-------------ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC 223 (460)
Q Consensus 157 ~~~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~ 223 (460)
+.. .+|....++..+++.++......+.....+.+.......++.+++|+|++||+..++.++. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~-~~ 238 (477)
T PLN02863 160 PTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK-EL 238 (477)
T ss_pred cccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh-hc
Confidence 100 0121113555566554432222233444444444445667889999999999999999987 54
Q ss_pred --CceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEE
Q 012587 224 --PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLW 301 (460)
Q Consensus 224 --~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 301 (460)
++++.|||+....... .......++.+..++++.+||+.++++++|||||||....+.++++.++.+++..+.+|||
T Consensus 239 ~~~~v~~IGPL~~~~~~~-~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEK-SGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred CCCCeEEeCCCccccccc-ccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 6899999997532100 0000000011112457999999888899999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCchHHHHHh-cCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhh
Q 012587 302 VIRPDLISGKDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQIN 380 (460)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 380 (460)
+++.+.... .....+|+++.++. +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.|
T Consensus 318 ~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 318 CVKEPVNEE-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred EECCCcccc-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 997431110 01124788887665 3466677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhceeeeec----CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcC
Q 012587 381 SRFVGEVWKLGLDIK----DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMMSS 455 (460)
Q Consensus 381 a~~~~e~~G~g~~~~----~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~ 455 (460)
|+++++++|+|+.+. ...+.+++.+++++++. ++++||+||+++++.+++++.+||++.+++++||+.+...+.
T Consensus 397 a~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~-~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~ 474 (477)
T PLN02863 397 ASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS-ENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELGL 474 (477)
T ss_pred HHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhcc
Confidence 999877789999994 23589999999999994 238999999999999999999999999999999999987754
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=4.2e-60 Score=466.00 Aligned_cols=425 Identities=29% Similarity=0.483 Sum_probs=321.8
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHH--HHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAEL--LGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
+..||+++|+|++||++|++.||+. |++||+.|||++++.+.+.+. ..+.. ...+++..++++++++..
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~-~~~~~------~~~~~~~~~~~glp~~~~-- 77 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLS-TVEKP------RRPVDLVFFSDGLPKDDP-- 77 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhc-cccCC------CCceEEEECCCCCCCCcc--
Confidence 4469999999999999999999999 569999999999988776653 22211 224778777777776531
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhcccc---ccC-
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI---IDA- 158 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~---~~~- 158 (460)
.+...++..+...+.+.++++++.. +||+||+|.++.|+..+|+++|||.+.+++.++.......+++.. .+.
T Consensus 78 -~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~ 154 (456)
T PLN02210 78 -RAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDL 154 (456)
T ss_pred -cCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcc
Confidence 3444566666655677788888876 899999999999999999999999999998888776665544211 000
Q ss_pred ----C--CCCCCCCccCCCCCCcccCCCCCChHHHHHH-HHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCc
Q 012587 159 ----G--ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFA-RETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGP 231 (460)
Q Consensus 159 ----~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~ 231 (460)
. ..|...-++..+++..+.. .......... +.......++.+++|++++||+..++.++. . +++++|||
T Consensus 155 ~~~~~~~~~Pgl~~~~~~dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~~VGP 230 (456)
T PLN02210 155 EDLNQTVELPALPLLEVRDLPSFMLP--SGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVIPIGP 230 (456)
T ss_pred cccCCeeeCCCCCCCChhhCChhhhc--CCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEEEEcc
Confidence 0 0111001334444433321 1111122222 222334567899999999999999998875 4 67999999
Q ss_pred cccccc--cCCCc-cccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCC
Q 012587 232 LNAHLK--VRIPE-KTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLI 308 (460)
Q Consensus 232 ~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 308 (460)
+..... ....+ .......+|..++++.+|++.++++++|||||||....+.+++++++.+++..+.+|||+++.+..
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~ 310 (456)
T PLN02210 231 LVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK 310 (456)
T ss_pred cCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence 974211 00000 000001234556778999998888999999999999889999999999999999999999964211
Q ss_pred CCCCCCCCCchHHHHHh-cCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhh
Q 012587 309 SGKDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEV 387 (460)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~ 387 (460)
...+..+.++. +++.++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++++++
T Consensus 311 ------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~ 384 (456)
T PLN02210 311 ------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDV 384 (456)
T ss_pred ------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHH
Confidence 01234454554 47778889999999999999999999999999999999999999999999999999999755
Q ss_pred hceeeeec-----CCcchHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012587 388 WKLGLDIK-----DLCDRNIVEKAVNDLMVE-RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 451 (460)
Q Consensus 388 ~G~g~~~~-----~~~~~~~l~~~i~~~l~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 451 (460)
+|+|+.+. +.++.++|+++|+++|.+ +|.++|+||+++++.+++++++||+|.+++++||+.+.
T Consensus 385 ~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 385 FGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred hCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 89999985 258999999999999974 46679999999999999999999999999999999875
No 8
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.5e-60 Score=461.77 Aligned_cols=434 Identities=29% Similarity=0.481 Sum_probs=327.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCccc-hhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHY-YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~-rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
..||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+..... . .++++|..++++++++.....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~----~---~~~i~~~~i~dglp~g~~~~~ 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHN----N---VENLSFLTFSDGFDDGVISNT 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCC----C---CCCEEEEEcCCCCCCcccccc
Confidence 359999999999999999999999996 7999999999754 222221100 0 235899999988876532223
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcC--C-CCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccC-C
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDS--K-SPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA-G 159 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~-~ 159 (460)
.+....+..+...+.+.+.++++.+ . .++++||+|.+..|+..+|+++|||++.++++++.....+.+++..... .
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~ 155 (455)
T PLN02152 76 DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVF 155 (455)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCee
Confidence 3455566666666888888888875 1 2459999999999999999999999999999999887776655321111 0
Q ss_pred CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhc--CCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccc
Q 012587 160 ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSA--HADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLK 237 (460)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~ 237 (460)
..|....++..+++.++............+.+...... .++.+++|||++||+..++.++. .+++.|||+.....
T Consensus 156 ~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~~~~~ 232 (455)
T PLN02152 156 EFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLLPAEI 232 (455)
T ss_pred ecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccCcccc
Confidence 12221125566777655432222222333333333222 24689999999999999988864 26999999975321
Q ss_pred cCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCC-C---CCC
Q 012587 238 VRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLIS-G---KDG 313 (460)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~---~~~ 313 (460)
.. .........+++.+.++.+|||.++.++||||||||....+.+++++++.+|+.++.+|||+++.+... . ...
T Consensus 233 ~~-~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~ 311 (455)
T PLN02152 233 FT-GSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEE 311 (455)
T ss_pred cc-ccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccccccc
Confidence 00 000000001123345799999988888999999999999999999999999999999999999753110 0 000
Q ss_pred C--CCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhcee
Q 012587 314 E--NQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLG 391 (460)
Q Consensus 314 ~--~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g 391 (460)
. ..+++++.++.++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|
T Consensus 312 ~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G 391 (455)
T PLN02152 312 ETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTG 391 (455)
T ss_pred ccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCce
Confidence 0 12467888888899999999999999999999999999999999999999999999999999999999997655777
Q ss_pred eeec---C-CcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012587 392 LDIK---D-LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 450 (460)
Q Consensus 392 ~~~~---~-~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 450 (460)
+.+. . ..+.++|+++|+++|++++.+||+||+++++.+++++.+||+|.+++++||+++
T Consensus 392 ~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 392 VRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred EEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6663 2 469999999999999875567999999999999999999999999999999976
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-59 Score=464.70 Aligned_cols=423 Identities=30% Similarity=0.524 Sum_probs=325.0
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPR 81 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (460)
+...||+++|+|++||++|++.||+.|++| ||+|||++++.+...+.+... .++++|..+|++++++..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--------~~gi~fv~lp~~~p~~~~- 78 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--------PDNIRFATIPNVIPSELV- 78 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--------CCCEEEEECCCCCCCccc-
Confidence 566899999999999999999999999999 999999999888777765321 235999999876665432
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCC-
Q 012587 82 TPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGE- 160 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~- 160 (460)
...+...++..+...+.+.++++++.+..++|+||+|.++.|+..+|+++|||++.++++++.....+.+++.....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 79 RAADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred cccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 1234555555555456777888887753367999999999999999999999999999999876665554432111000
Q ss_pred --------------CCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC-Cc
Q 012587 161 --------------LPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC-PN 225 (460)
Q Consensus 161 --------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~-~~ 225 (460)
.|....++..+++.++.. ........+........+++.+++|++++||+..++.++. .. ++
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~~~~ 235 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSSTRLSDLPPIFHG--NSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKS-KFPFP 235 (459)
T ss_pred CCccccccCCccccCCCCCCCChHHCchhhcC--CchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHh-hcCCc
Confidence 111111333344433321 1223344455555555677899999999999998998887 55 58
Q ss_pred eeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEcc
Q 012587 226 IYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRP 305 (460)
Q Consensus 226 ~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 305 (460)
++.|||+........... .. ...+.+.++.+|++.++++++|||||||....+.++++.++.+++..+.+|||++..
T Consensus 236 ~~~iGP~~~~~~~~~~~~--~~-~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSS--SS-NNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred eEEecCcccccccCCCcc--cc-ccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 999999975321100000 00 000123478899998888999999999998888999999999999999999998752
Q ss_pred CCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHH
Q 012587 306 DLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVG 385 (460)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~ 385 (460)
+ ..++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++++
T Consensus 313 ~-----------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~ 381 (459)
T PLN02448 313 E-----------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381 (459)
T ss_pred c-----------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 1 12344444578999999999999999999999999999999999999999999999999999999997
Q ss_pred hhhceeeeec------CCcchHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012587 386 EVWKLGLDIK------DLCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKM 452 (460)
Q Consensus 386 e~~G~g~~~~------~~~~~~~l~~~i~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 452 (460)
+.+|+|+.+. ...++++|+++|+++|.+ ++.+||+||+++++.+++++.+||+|.+++++||+.+..
T Consensus 382 ~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 382 EDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 5578888884 147999999999999973 467899999999999999999999999999999999874
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.5e-59 Score=456.11 Aligned_cols=435 Identities=27% Similarity=0.453 Sum_probs=324.2
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC----CCCC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT----DGLP 76 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (460)
|.+....||+++|+|++||++|++.||+.|+.||..|||++++.+...+.+.... . .+++++..+| ++++
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~-~-----~~~i~~~~lp~p~~dglp 74 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ-L-----SSSITLVSFPLPSVPGLP 74 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc-C-----CCCeeEEECCCCccCCCC
Confidence 5666678999999999999999999999999999999999998887666532110 0 1247888887 5666
Q ss_pred CCCCCCCCChH----HHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhc
Q 012587 77 RDHPRTPDKFP----ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCI 152 (460)
Q Consensus 77 ~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (460)
++... ..+.. .++......+.+.+++++++. ++++||+|.+..|+..+|+++|||++.++++++.....+.++
T Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 151 (472)
T PLN02670 75 SSAES-STDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPP 151 (472)
T ss_pred CCccc-ccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhh
Confidence 54321 12221 234445555778888888886 899999999999999999999999999999888776664432
Q ss_pred cccccCCC----------C----CCCC--CccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHH
Q 012587 153 PDIIDAGE----------L----PIKG--FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILS 216 (460)
Q Consensus 153 ~~~~~~~~----------~----p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~ 216 (460)
......+. . |... .++..+++.++............+.+......+++.+++|||++||+..++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 152 SSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred HhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 11100000 0 1000 022234443332111111222333334344567889999999999999999
Q ss_pred HHhhcCC-CceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC
Q 012587 217 QIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS 295 (460)
Q Consensus 217 ~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 295 (460)
.++. .. ++++.|||+........... ..+. +.++++.+|||.+++++||||||||....+.+++.+++.+|+.+
T Consensus 232 ~l~~-~~~~~v~~VGPl~~~~~~~~~~~---~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s 306 (472)
T PLN02670 232 LLSD-LYRKPIIPIGFLPPVIEDDEEDD---TIDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKS 306 (472)
T ss_pred HHHH-hhCCCeEEEecCCcccccccccc---cccc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 9987 54 68999999975311100000 0000 11256899999888899999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCcee-eeecChHhhhcccccccccccCChhHHHHHHHhCCceeccccc
Q 012587 296 KKSFLWVIRPDLISGKDGENQIPEELLEATKERGCI-AGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF 374 (460)
Q Consensus 296 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~-~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~ 374 (460)
+.+|||++.............+|+++.++..++..+ .+|+||.+||+|+++++||||||+||++||+++|||||++|++
T Consensus 307 ~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 307 ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 999999997531110011125889998887666665 5999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhhhceeeeec-C----CcchHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012587 375 ADQQINSRFVGEVWKLGLDIK-D----LCDRNIVEKAVNDLMVE-RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVN 448 (460)
Q Consensus 375 ~DQ~~na~~~~e~~G~g~~~~-~----~~~~~~l~~~i~~~l~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 448 (460)
+||+.||++++ ++|+|+.+. . .++.++|+++|+++|.+ +|.+||+||+++++.+++. +....+++.+++
T Consensus 387 ~DQ~~Na~~v~-~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~~ 461 (472)
T PLN02670 387 NEQGLNTRLLH-GKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELVH 461 (472)
T ss_pred hccHHHHHHHH-HcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHHH
Confidence 99999999994 789999996 2 38999999999999974 3558999999999999984 666889999999
Q ss_pred HHHhhc
Q 012587 449 DIKMMS 454 (460)
Q Consensus 449 ~l~~~~ 454 (460)
.|..+.
T Consensus 462 ~l~~~~ 467 (472)
T PLN02670 462 YLRENR 467 (472)
T ss_pred HHHHhc
Confidence 998774
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-58 Score=457.58 Aligned_cols=433 Identities=30% Similarity=0.491 Sum_probs=327.8
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCC----CeEEEEeCccchh----HHhhccccccccccCCCCceEEecCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAG----IKITFLNTEHYYD----RVIRHSSDAFSRYMQIPGFQFKTLTDGLP 76 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (460)
++.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.. .+.......... ..++.|..+|++.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~ 78 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAAS---GLDIRFHHLPAVEP 78 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccC---CCCEEEEECCCCCC
Confidence 456999999999999999999999999997 7999999866432 232211000000 12488999986543
Q ss_pred CCCCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccc
Q 012587 77 RDHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDII 156 (460)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (460)
+.. ..+...++..+...+.+.+++++..+..++++||+|.++.|+..+|+++|||++.++++++.....+.+++...
T Consensus 79 p~~---~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 79 PTD---AAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred CCc---cccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 211 12334455555556778888888875224699999999999999999999999999999998887776654321
Q ss_pred cC------C-----CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcC---
Q 012587 157 DA------G-----ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS--- 222 (460)
Q Consensus 157 ~~------~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~--- 222 (460)
.. . .+|....++..+++..+.. ........+........+++.+++|||++||+..++.++. .
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~-~~~~ 232 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMD--KKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD-GRCT 232 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcC--CCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh-cccc
Confidence 11 0 0111111445555543322 1112233333344555778899999999999999998876 3
Q ss_pred ----CCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCc
Q 012587 223 ----CPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKS 298 (460)
Q Consensus 223 ----~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~ 298 (460)
.++++.|||+....... .....++++.+||+.++.+++|||||||....+.+++++++.+|+..+.+
T Consensus 233 ~~~~~~~v~~vGPl~~~~~~~---------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~ 303 (480)
T PLN00164 233 PGRPAPTVYPIGPVISLAFTP---------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHR 303 (480)
T ss_pred ccCCCCceEEeCCCccccccC---------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 26899999997432110 11124567999999988899999999999888999999999999999999
Q ss_pred EEEEEccCCCCC------CCCCCCCchHHHHHhcCCceee-eecChHhhhcccccccccccCChhHHHHHHHhCCceecc
Q 012587 299 FLWVIRPDLISG------KDGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 371 (460)
Q Consensus 299 ~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~n~~~~-~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 371 (460)
|||+++.....+ .+....+|+++.++..+...++ +|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 304 flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~ 383 (480)
T PLN00164 304 FLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPW 383 (480)
T ss_pred EEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeC
Confidence 999998532110 0111247888887766665555 999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHhhhceeeeec-C-----CcchHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 012587 372 PSFADQQINSRFVGEVWKLGLDIK-D-----LCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCN 442 (460)
Q Consensus 372 P~~~DQ~~na~~~~e~~G~g~~~~-~-----~~~~~~l~~~i~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 442 (460)
|+++||+.||+++++++|+|+.+. . ..+.++|.++|+++|.+ ++..+|++|+++++.+++++.+||++.++
T Consensus 384 P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~ 463 (480)
T PLN00164 384 PLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAA 463 (480)
T ss_pred CccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999998866789999985 2 26899999999999974 47889999999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 012587 443 LDRLVNDIKMMSS 455 (460)
Q Consensus 443 ~~~~~~~l~~~~~ 455 (460)
+++|++++....-
T Consensus 464 l~~~v~~~~~~~~ 476 (480)
T PLN00164 464 LQRLAREIRHGAV 476 (480)
T ss_pred HHHHHHHHHhccC
Confidence 9999999987654
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.6e-58 Score=453.06 Aligned_cols=420 Identities=30% Similarity=0.517 Sum_probs=319.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCC----CCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD----GLPRDHPR 81 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 81 (460)
.||+++|+|++||++|++.||+.|+ ++|+.|||++++.+...+...... .+++++..+|. ++++..
T Consensus 6 pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~-------~~~i~~~~lp~p~~~glp~~~-- 76 (481)
T PLN02992 6 PHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN-------STGVDIVGLPSPDISGLVDPS-- 76 (481)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc-------CCCceEEECCCccccCCCCCC--
Confidence 5999999999999999999999998 789999999998876555332110 12477888874 333111
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccC-C-
Q 012587 82 TPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA-G- 159 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~-~- 159 (460)
......+......+.+.++++++++..+|++||+|.++.|+..+|+++|||++.++++++.....+.+++..... .
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 77 --AHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred --ccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 122223333333466788888877534789999999999999999999999999999998877655544321100 0
Q ss_pred ---------CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcC-------C
Q 012587 160 ---------ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS-------C 223 (460)
Q Consensus 160 ---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~-------~ 223 (460)
.+|....++..+++..+.. ........+.+......+++.+++|||++||+..++.++. . .
T Consensus 155 ~~~~~~~~~~iPg~~~l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~-~~~~~~~~~ 231 (481)
T PLN02992 155 EHTVQRKPLAMPGCEPVRFEDTLDAYLV--PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD-PKLLGRVAR 231 (481)
T ss_pred ccccCCCCcccCCCCccCHHHhhHhhcC--CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh-ccccccccC
Confidence 0111112334444432211 1122334444455556778899999999999999998864 2 1
Q ss_pred CceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEE
Q 012587 224 PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVI 303 (460)
Q Consensus 224 ~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 303 (460)
++++.|||+....... ..++++.+||+.++.++||||||||....+.+++++++.+|+.++.+|||++
T Consensus 232 ~~v~~VGPl~~~~~~~------------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~ 299 (481)
T PLN02992 232 VPVYPIGPLCRPIQSS------------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVV 299 (481)
T ss_pred CceEEecCccCCcCCC------------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5699999997532110 1345688999988889999999999999999999999999999999999999
Q ss_pred ccCCCCC-------------CC-CCCCCchHHHHHhcCC-ceeeeecChHhhhcccccccccccCChhHHHHHHHhCCce
Q 012587 304 RPDLISG-------------KD-GENQIPEELLEATKER-GCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPM 368 (460)
Q Consensus 304 ~~~~~~~-------------~~-~~~~~~~~~~~~~~~n-~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~ 368 (460)
+.+...+ .. ....+|++|.++..++ +++.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 300 r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~ 379 (481)
T PLN02992 300 RPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPM 379 (481)
T ss_pred eCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCE
Confidence 7431100 00 0124788888887654 4556999999999999999999999999999999999999
Q ss_pred ecccccccchhhHHHHHhhhceeeeecC---CcchHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHhh--cCCChHHH
Q 012587 369 ICWPSFADQQINSRFVGEVWKLGLDIKD---LCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVN--KGGSSYCN 442 (460)
Q Consensus 369 l~~P~~~DQ~~na~~~~e~~G~g~~~~~---~~~~~~l~~~i~~~l~-~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~ 442 (460)
|++|+++||+.||+++++++|+|+.+++ .++.++|+++|+++|. +++.++|++++++++++++++. +||+|.++
T Consensus 380 l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~ 459 (481)
T PLN02992 380 IAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHES 459 (481)
T ss_pred EecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999999999658999999962 4899999999999997 4567999999999999999994 59999999
Q ss_pred HHHHHHHHHh
Q 012587 443 LDRLVNDIKM 452 (460)
Q Consensus 443 ~~~~~~~l~~ 452 (460)
+++|++.+..
T Consensus 460 l~~~v~~~~~ 469 (481)
T PLN02992 460 LCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 13
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.7e-58 Score=445.89 Aligned_cols=430 Identities=23% Similarity=0.357 Sum_probs=319.8
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC--CCCCCC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT--DGLPRD 78 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (460)
|+. .++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+...... .. ...+.+.++| ++++++
T Consensus 1 ~~~-~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~--~~---~~~v~~~~~p~~~glp~g 74 (453)
T PLN02764 1 MGG-LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLF--PH---NIVFRSVTVPHVDGLPVG 74 (453)
T ss_pred CCC-CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccC--CC---CceEEEEECCCcCCCCCc
Confidence 455 357999999999999999999999999999999999998876655432100 00 0126677776 566655
Q ss_pred CCCC---CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhcccc
Q 012587 79 HPRT---PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (460)
Q Consensus 79 ~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (460)
.... .......+......+.+.++++++.. +||+||+|. +.|+..+|+++|||++.++++++.....+.. +..
T Consensus 75 ~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~ 150 (453)
T PLN02764 75 TETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGG 150 (453)
T ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccc
Confidence 2211 10111223333334668888888886 889999995 7899999999999999999999887766542 210
Q ss_pred ccCCCCCCCC----CccCCCCCCcccCC--CCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC-CceeE
Q 012587 156 IDAGELPIKG----FLRCRDLPSFCRVN--DPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC-PNIYS 228 (460)
Q Consensus 156 ~~~~~~p~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~-~~~~~ 228 (460)
......|... -++.++++.+.... ...........+......+++.+++|||++||+..++.++. .. ++++.
T Consensus 151 ~~~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~-~~~~~v~~ 229 (453)
T PLN02764 151 ELGVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK-HCRKKVLL 229 (453)
T ss_pred cCCCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh-hcCCcEEE
Confidence 0000011100 13334444322111 11111222222232445678899999999999999999976 53 67999
Q ss_pred eCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCC
Q 012587 229 IGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLI 308 (460)
Q Consensus 229 vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 308 (460)
|||+...... . ...++++.+|||.+++++||||||||....+..++.+++.+|+..+.+|+|+++.+..
T Consensus 230 VGPL~~~~~~----------~-~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~ 298 (453)
T PLN02764 230 TGPVFPEPDK----------T-RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRG 298 (453)
T ss_pred eccCccCccc----------c-ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 9999753210 0 0124578999999999999999999999999999999999999999999999985321
Q ss_pred CCCCCCCCCchHHHHHhcCCceee-eecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhh
Q 012587 309 SGKDGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEV 387 (460)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~n~~~~-~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~ 387 (460)
.+ .....+|+++.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.
T Consensus 299 ~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~ 377 (453)
T PLN02764 299 SS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE 377 (453)
T ss_pred Cc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 10 011258899988876666555 9999999999999999999999999999999999999999999999999999766
Q ss_pred hceeeeec-C---CcchHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcCCC
Q 012587 388 WKLGLDIK-D---LCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMMSSQP 457 (460)
Q Consensus 388 ~G~g~~~~-~---~~~~~~l~~~i~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~ 457 (460)
+|+|+.+. + .++.++|+++|+++|++ ++.++|++++++++.+++ +|++.+++++||+.+.+....+
T Consensus 378 ~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~~~~ 450 (453)
T PLN02764 378 LKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLVSGT 450 (453)
T ss_pred hceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhcccc
Confidence 89999985 2 48999999999999964 356799999999999976 7999999999999998875543
No 14
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.5e-58 Score=450.42 Aligned_cols=418 Identities=21% Similarity=0.332 Sum_probs=310.8
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEec--C--CCCC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTL--T--DGLP 76 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 76 (460)
||. ..||+++|+|++||++|++.||+.|+++||+|||++++.+...+...... ..++++..+ + ++++
T Consensus 1 ~~~--~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~-------~~~i~~~~l~~p~~dgLp 71 (442)
T PLN02208 1 MEP--KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLF-------PDSIVFHPLTIPPVNGLP 71 (442)
T ss_pred CCC--CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCC-------CCceEEEEeCCCCccCCC
Confidence 454 46999999999999999999999999999999999997766665443210 113455543 3 4555
Q ss_pred CCCCCCCCCh----HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhc
Q 012587 77 RDHPRTPDKF----PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCI 152 (460)
Q Consensus 77 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (460)
++.. ...+. ...+......+.+.++++++.+ ++|+||+| ++.|+..+|+++|||++.++++++.... +.++
T Consensus 72 ~g~~-~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~ 146 (442)
T PLN02208 72 AGAE-TTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHV 146 (442)
T ss_pred CCcc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHcc
Confidence 5432 11122 2233333445677788888876 89999999 5789999999999999999999887654 4443
Q ss_pred cccccCCCCCCCC----CccCCCCCCcccCCCCCChHHHHHHHH-hhhhcCCCEEEEcChhhhchhHHHHHhhcCC-Cce
Q 012587 153 PDIIDAGELPIKG----FLRCRDLPSFCRVNDPMDPHLLLFARE-TRLSAHADGLILNTFEDLEGPILSQIRNHSC-PNI 226 (460)
Q Consensus 153 ~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~-~~~ 226 (460)
+........|... .++..+++.+ .........+.+. .....+++.+++|+|++||+..+++++. .. +++
T Consensus 147 ~~~~~~~~~pglp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~-~~~~~v 221 (442)
T PLN02208 147 PGGKLGVPPPGYPSSKVLFRENDAHAL----ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISR-QYHKKV 221 (442)
T ss_pred CccccCCCCCCCCCcccccCHHHcCcc----cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHh-hcCCCE
Confidence 3211000011100 1233444432 1112223333322 2344678899999999999999998876 43 789
Q ss_pred eEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccC
Q 012587 227 YSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPD 306 (460)
Q Consensus 227 ~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 306 (460)
+.|||+........ ..++++.+|||.+++++||||||||....+.+.+.+++.+++..+.+++|+++.+
T Consensus 222 ~~vGpl~~~~~~~~-----------~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~ 290 (442)
T PLN02208 222 LLTGPMFPEPDTSK-----------PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPP 290 (442)
T ss_pred EEEeecccCcCCCC-----------CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 99999985422100 1356799999988889999999999998899989998888888888999998743
Q ss_pred CCCCCCCCCCCchHHHHHhc-CCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHH
Q 012587 307 LISGKDGENQIPEELLEATK-ERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVG 385 (460)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~ 385 (460)
... ......+|++|.++.. .|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++++
T Consensus 291 ~~~-~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~ 369 (442)
T PLN02208 291 RGS-STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMT 369 (442)
T ss_pred Ccc-cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHH
Confidence 110 0011257888888754 46666699999999999999999999999999999999999999999999999999886
Q ss_pred hhhceeeeec-CC---cchHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 012587 386 EVWKLGLDIK-DL---CDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 453 (460)
Q Consensus 386 e~~G~g~~~~-~~---~~~~~l~~~i~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 453 (460)
+.+|+|+.+. .+ +++++|+++|++++++ ++.++|++++++++.+.+ +|+|.+++++||+.+.++
T Consensus 370 ~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 370 EEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHh
Confidence 6689999996 33 8999999999999963 367799999999999855 678999999999999654
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.7e-58 Score=457.57 Aligned_cols=442 Identities=28% Similarity=0.476 Sum_probs=312.6
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCC-CCceEEecC---CCCC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQI-PGFQFKTLT---DGLP 76 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~ 76 (460)
|+. +++||+++|+|++||++|++.||+.|+.|||+|||++++.+...+.+............ ..+.+.++| .+++
T Consensus 1 ~~~-~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNH-EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCC-CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 444 35799999999999999999999999999999999999888766654321110000000 024445555 3455
Q ss_pred CCCCCC-------CCChHHHHHHHH---hhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHH
Q 012587 77 RDHPRT-------PDKFPELVDSLN---CATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAF 146 (460)
Q Consensus 77 ~~~~~~-------~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 146 (460)
++.... ......++..+. ..+.+.+++++++. +||+||+|.++.|+..+|+++|||++.+++++++..
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 432111 011222222222 23455556666654 899999999999999999999999999999887766
Q ss_pred HHHhhccccccCCC---------CCCCC---CccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhH
Q 012587 147 WSFHCIPDIIDAGE---------LPIKG---FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPI 214 (460)
Q Consensus 147 ~~~~~~~~~~~~~~---------~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~ 214 (460)
....++....+... .|... .++..+++. ......+...+........+++.+++|++++||++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~ 233 (482)
T PLN03007 158 CASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQIND----ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAY 233 (482)
T ss_pred HHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCC----CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHH
Confidence 55442221111000 11000 011111111 111122333333444456778899999999999998
Q ss_pred HHHHhhcCC-CceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHh
Q 012587 215 LSQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLV 293 (460)
Q Consensus 215 ~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 293 (460)
.+.+++ .. .++++|||+........... ......+..++++.+||+.++++++|||||||+...+...+..++.+++
T Consensus 234 ~~~~~~-~~~~~~~~VGPl~~~~~~~~~~~-~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~ 311 (482)
T PLN03007 234 ADFYKS-FVAKRAWHIGPLSLYNRGFEEKA-ERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLE 311 (482)
T ss_pred HHHHHh-ccCCCEEEEcccccccccccccc-ccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHH
Confidence 888876 55 47999999864322100000 0000111224668999998888999999999999888899999999999
Q ss_pred hCCCcEEEEEccCCCCCCCCCCCCchHHHHHh-cCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceeccc
Q 012587 294 HSKKSFLWVIRPDLISGKDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWP 372 (460)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P 372 (460)
.++++|||+++.+...+ .....+|+++.++. +.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 312 ~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 312 GSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred HCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc
Confidence 99999999997532110 01124788887764 56778889999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHhhhceeeee--------c-CCcchHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 012587 373 SFADQQINSRFVGEVWKLGLDI--------K-DLCDRNIVEKAVNDLMVE-RKEEFMESADRMANLAKKSVNKGGSSYCN 442 (460)
Q Consensus 373 ~~~DQ~~na~~~~e~~G~g~~~--------~-~~~~~~~l~~~i~~~l~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 442 (460)
+++||+.||+++++.+++|+.+ + ..+++++|+++|+++|.+ ++.+||+||+++++.+++++.+||+|+++
T Consensus 391 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 391 VGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred chhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999886544555443 3 457999999999999985 34599999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012587 443 LDRLVNDIKM 452 (460)
Q Consensus 443 ~~~~~~~l~~ 452 (460)
+++||+.+..
T Consensus 471 l~~~v~~~~~ 480 (482)
T PLN03007 471 LNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 16
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.5e-58 Score=452.60 Aligned_cols=440 Identities=29% Similarity=0.472 Sum_probs=320.2
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC-----CCCCCC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT-----DGLPRD 78 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 78 (460)
.+..||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.......... ...++|..+| ++++++
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~---~~~i~~~~lp~p~~~dglp~~ 82 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARES---GLPIRLVQIPFPCKEVGLPIG 82 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhcccc---CCCeEEEEcCCCCccCCCCCC
Confidence 34469999999999999999999999999999999999988876664432100000 1137888887 577655
Q ss_pred CCCCC--C--ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccc
Q 012587 79 HPRTP--D--KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPD 154 (460)
Q Consensus 79 ~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 154 (460)
..... . .+...+......+.+.+.+++.....+|++||+|.++.|+..+|+++|||++.+++++++......++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 32111 0 1222222333346677788877642468999999999999999999999999999998877655322111
Q ss_pred ccc-----CC----CCCCCC---CccCCCCCCcccCCCCCChHHHHHHHHhh-hhcCCCEEEEcChhhhchhHHHHHhhc
Q 012587 155 IID-----AG----ELPIKG---FLRCRDLPSFCRVNDPMDPHLLLFARETR-LSAHADGLILNTFEDLEGPILSQIRNH 221 (460)
Q Consensus 155 ~~~-----~~----~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~le~p~~~~~~~~ 221 (460)
..+ .. ..|... .++..+++..+... .....+..... ....++.+++|||++||+..++.++.
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~----~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~- 237 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL----PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK- 237 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChhhcCc----ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh-
Confidence 000 00 011100 12333343322111 11222222222 22456789999999999999999876
Q ss_pred CC-CceeEeCccccccccCCCccccCCCCcc-ccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcE
Q 012587 222 SC-PNIYSIGPLNAHLKVRIPEKTYSSSSLW-KIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSF 299 (460)
Q Consensus 222 ~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 299 (460)
.. ++++.|||+.......... ... +... ..++++.+|||.+++++||||||||......+.+.+++.+|+.++.+|
T Consensus 238 ~~~~~v~~VGPL~~~~~~~~~~-~~~-~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~f 315 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKRNLDK-FER-GNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPF 315 (491)
T ss_pred hcCCcEEEECcccccccccccc-ccc-CCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 55 6899999997432110000 000 0111 123468899999888999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCchHHHHHh-cCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccch
Q 012587 300 LWVIRPDLISGKDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQ 378 (460)
Q Consensus 300 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~ 378 (460)
||+++.+..........+|+++.++. +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|.+.||+
T Consensus 316 lW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~ 395 (491)
T PLN02534 316 IWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQF 395 (491)
T ss_pred EEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHH
Confidence 99997431110000113578888763 56777779999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhceeeeec-C-------------CcchHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 012587 379 INSRFVGEVWKLGLDIK-D-------------LCDRNIVEKAVNDLMV---ERKEEFMESADRMANLAKKSVNKGGSSYC 441 (460)
Q Consensus 379 ~na~~~~e~~G~g~~~~-~-------------~~~~~~l~~~i~~~l~---~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 441 (460)
.||++++|.+|+|+.+. . ..++++|+++|+++|. ++|.++|+||+++++.+++++.+||+|.+
T Consensus 396 ~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~ 475 (491)
T PLN02534 396 LNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHI 475 (491)
T ss_pred HHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999988999999873 0 2689999999999995 56789999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 012587 442 NLDRLVNDIKMM 453 (460)
Q Consensus 442 ~~~~~~~~l~~~ 453 (460)
++++||+++...
T Consensus 476 nl~~fv~~i~~~ 487 (491)
T PLN02534 476 NLSILIQDVLKQ 487 (491)
T ss_pred HHHHHHHHHHHH
Confidence 999999999754
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.5e-57 Score=443.60 Aligned_cols=429 Identities=25% Similarity=0.415 Sum_probs=322.7
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCccchhHHhhcc-ccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFLNTEHYYDRVIRHS-SDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
...||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+.... ...... ..++++..+|....++....
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~l~~~ 78 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAA---RTTCQITEIPSVDVDNLVEP 78 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccC---CCceEEEECCCCccccCCCC
Confidence 34599999999999999999999999987 99999999876554432111 110000 11488888885332221000
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCc-eEEEecchhHHHHHHhhccccc---cC
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVS-IIYFRTISACAFWSFHCIPDII---DA 158 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~---~~ 158 (460)
..+....+......+.+.++++++.+..+|++||+|.++.|+..+|+++||| .+.++++.+.....+.+++... ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~ 158 (470)
T PLN03015 79 DATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEG 158 (470)
T ss_pred CccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccc
Confidence 0133333444445678889999987634689999999999999999999999 5888888777765555543211 11
Q ss_pred C--------CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcC-------C
Q 012587 159 G--------ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS-------C 223 (460)
Q Consensus 159 ~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~-------~ 223 (460)
. .+|...-++..+++..+.. ........+.+......+++.+++|||++||+..++.++. . .
T Consensus 159 ~~~~~~~~~~vPg~p~l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~-~~~~~~~~~ 235 (470)
T PLN03015 159 EYVDIKEPLKIPGCKPVGPKELMETMLD--RSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRE-DMELNRVMK 235 (470)
T ss_pred ccCCCCCeeeCCCCCCCChHHCCHhhcC--CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh-hcccccccC
Confidence 0 0111112444555533321 1122233344444556789999999999999999998876 4 2
Q ss_pred CceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEE
Q 012587 224 PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVI 303 (460)
Q Consensus 224 ~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 303 (460)
++++.|||+...... ...++++.+|||.++.++||||||||....+.+++++++.+|+.++.+|||++
T Consensus 236 ~~v~~VGPl~~~~~~------------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~ 303 (470)
T PLN03015 236 VPVYPIGPIVRTNVH------------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVL 303 (470)
T ss_pred CceEEecCCCCCccc------------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 569999999742110 01234699999998889999999999999999999999999999999999999
Q ss_pred ccCCCC-C-----CC-CCCCCchHHHHHhcCCcee-eeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccc
Q 012587 304 RPDLIS-G-----KD-GENQIPEELLEATKERGCI-AGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFA 375 (460)
Q Consensus 304 ~~~~~~-~-----~~-~~~~~~~~~~~~~~~n~~~-~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~ 375 (460)
+.+... + .. ..+.+|+++.++..++..+ .+|+||.+||+|+++++||||||+||++||+++|||||++|+++
T Consensus 304 r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~ 383 (470)
T PLN03015 304 RRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYA 383 (470)
T ss_pred ecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEeccccc
Confidence 743110 0 00 1125788888887776655 59999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhceeeeec-----CCcchHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012587 376 DQQINSRFVGEVWKLGLDIK-----DLCDRNIVEKAVNDLMV---ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLV 447 (460)
Q Consensus 376 DQ~~na~~~~e~~G~g~~~~-----~~~~~~~l~~~i~~~l~---~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 447 (460)
||+.||+++++.+|+|+.+. +..+.++|+++|+++|. ++|.++|+||+++++..++++++||+|.+++++|+
T Consensus 384 DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~ 463 (470)
T PLN03015 384 EQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWA 463 (470)
T ss_pred chHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999977899999994 25899999999999994 56789999999999999999999999999999999
Q ss_pred HHHH
Q 012587 448 NDIK 451 (460)
Q Consensus 448 ~~l~ 451 (460)
+.+.
T Consensus 464 ~~~~ 467 (470)
T PLN03015 464 KRCY 467 (470)
T ss_pred Hhcc
Confidence 8864
No 18
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.2e-58 Score=454.81 Aligned_cols=431 Identities=27% Similarity=0.463 Sum_probs=317.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCccchhHHhh-ccc-cccccccCCCCceEEecCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTEHYYDRVIR-HSS-DAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
+||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+.. ... ..... ...++++|..+|.+.++.. .
T Consensus 3 ~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~~-~- 79 (481)
T PLN02554 3 IELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSA-SSEDRLRYEVISAGDQPTT-E- 79 (481)
T ss_pred eEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhccc-CCCCCeEEEEcCCCCCCcc-c-
Confidence 5999999999999999999999999998 88999999877543210 000 00000 0022589999987654221 1
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcC---CCCc-cEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccC
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDS---KSPV-NCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA 158 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
...+..++..+...+.+.+++++... ..+| ++||+|.++.|+..+|+++|||++.++++++.....+.+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~ 159 (481)
T PLN02554 80 DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDE 159 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccc
Confidence 11222233333333344444444331 0133 8999999999999999999999999999999888877665432111
Q ss_pred ------CC--------CCCCC-CccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhc--
Q 012587 159 ------GE--------LPIKG-FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNH-- 221 (460)
Q Consensus 159 ------~~--------~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~-- 221 (460)
.. .|... -++..+++..+. .......+.+......+++.+++|++++||......+...
T Consensus 160 ~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~----~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~ 235 (481)
T PLN02554 160 KKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLL----SKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSG 235 (481)
T ss_pred cccCccccCCCCceeECCCCCCCCCHHHCCCccc----CHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhccc
Confidence 00 11000 123334433221 1122334444455567789999999999999888877641
Q ss_pred CCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEE
Q 012587 222 SCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLW 301 (460)
Q Consensus 222 ~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 301 (460)
..|+++.|||+........ . .....+.++.+|++.++++++|||||||+...+..+++.++.+++.++.+|||
T Consensus 236 ~~~~v~~vGpl~~~~~~~~-~------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 236 DLPPVYPVGPVLHLENSGD-D------SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred CCCCEEEeCCCcccccccc-c------cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 2378999999943221100 0 00123457999999888889999999999888999999999999999999999
Q ss_pred EEccCCCC------CC--CCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccc
Q 012587 302 VIRPDLIS------GK--DGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS 373 (460)
Q Consensus 302 ~~~~~~~~------~~--~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 373 (460)
++++.... +. ...+.+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 309 SLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCc
Confidence 99753110 00 00113688998888999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhhceeeeec------------CCcchHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHhhcCCChH
Q 012587 374 FADQQINSRFVGEVWKLGLDIK------------DLCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGGSSY 440 (460)
Q Consensus 374 ~~DQ~~na~~~~e~~G~g~~~~------------~~~~~~~l~~~i~~~l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 440 (460)
++||+.||+++++++|+|+.+. +.+++++|+++|+++|. + ++||+||+++++.+++++.+||++.
T Consensus 389 ~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~av~~gGss~ 466 (481)
T PLN02554 389 YAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHVALMDGGSSH 466 (481)
T ss_pred cccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCChHH
Confidence 9999999965447899999984 25799999999999996 6 8999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 012587 441 CNLDRLVNDIKMM 453 (460)
Q Consensus 441 ~~~~~~~~~l~~~ 453 (460)
+++++||+++..+
T Consensus 467 ~~l~~lv~~~~~~ 479 (481)
T PLN02554 467 TALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.5e-58 Score=453.28 Aligned_cols=430 Identities=25% Similarity=0.423 Sum_probs=312.8
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCC---eEEEEeCccchh-----HHhhccccccccccCCCCceEEecCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGI---KITFLNTEHYYD-----RVIRHSSDAFSRYMQIPGFQFKTLTDGLP 76 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH---~Vt~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (460)
+..||+++|+|++||++|++.||+.|+.+|. .||+++++.+.. .+..... . .++++|..+|++..
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~----~---~~~i~~~~lp~~~~ 74 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIA----S---EPRIRLVTLPEVQD 74 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhccc----C---CCCeEEEECCCCCC
Confidence 4469999999999999999999999999983 567776543221 1111100 0 23599999986542
Q ss_pred CCCCCC-CCChHHHHHHHHhhCcHHHHHHHHcC-----C--C-CccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHH
Q 012587 77 RDHPRT-PDKFPELVDSLNCATPPLLKEMVSDS-----K--S-PVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFW 147 (460)
Q Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~-~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 147 (460)
+...+. .......+..+...+.+.+++.++++ . . ++++||+|.++.|+..+|+++|||++.++++++....
T Consensus 75 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 75 PPPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 211000 11111222333333445555555543 1 1 3499999999999999999999999999999988777
Q ss_pred HHhhccccc---cCC----C------CCCC-CCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchh
Q 012587 148 SFHCIPDII---DAG----E------LPIK-GFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGP 213 (460)
Q Consensus 148 ~~~~~~~~~---~~~----~------~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p 213 (460)
.+.+++... ... . .|.. ..++..+++...... .....+........+++.+++|||++||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 155 MMKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK----ESYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred HHHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc----chHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 665543211 000 0 1110 012333333221111 112233344455577889999999999999
Q ss_pred HHHHHhhcC---CCceeEeCccccccccCCCccccCCCCcc-ccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHH
Q 012587 214 ILSQIRNHS---CPNIYSIGPLNAHLKVRIPEKTYSSSSLW-KIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFY 289 (460)
Q Consensus 214 ~~~~~~~~~---~~~~~~vG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~ 289 (460)
.++.++. . +|+++.|||+......... ... ..+.++.+||+.++.+++|||||||+...+..++.+++
T Consensus 231 ~~~~l~~-~~~~~p~v~~vGpl~~~~~~~~~-------~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela 302 (475)
T PLN02167 231 AFDYFSR-LPENYPPVYPVGPILSLKDRTSP-------NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIA 302 (475)
T ss_pred HHHHHHh-hcccCCeeEEeccccccccccCC-------CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHH
Confidence 9998865 4 4789999999763221000 111 12356999999888889999999999888999999999
Q ss_pred HHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCcee
Q 012587 290 YGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMI 369 (460)
Q Consensus 290 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l 369 (460)
.+++.++.+|||+++.+..........+|+++.++..++.++++|+||.+||+|+++++||||||+||++||+++|||||
T Consensus 303 ~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l 382 (475)
T PLN02167 303 QALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIA 382 (475)
T ss_pred HHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEE
Confidence 99999999999999753110000112478899888888888899999999999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHhhhceeeeec-C-------CcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 012587 370 CWPSFADQQINSRFVGEVWKLGLDIK-D-------LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYC 441 (460)
Q Consensus 370 ~~P~~~DQ~~na~~~~e~~G~g~~~~-~-------~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 441 (460)
++|+++||+.||+++.+++|+|+.+. . .+++++|+++|+++|.++ ..||+||+++++.+++++.+||++.+
T Consensus 383 ~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~r~~a~~~~~~~~~av~~gGsS~~ 461 (475)
T PLN02167 383 TWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-DVPRKKVKEIAEAARKAVMDGGSSFV 461 (475)
T ss_pred eccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999987547899999885 2 369999999999999741 48999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 012587 442 NLDRLVNDIKMMS 454 (460)
Q Consensus 442 ~~~~~~~~l~~~~ 454 (460)
++++||+.+...+
T Consensus 462 ~l~~~v~~i~~~~ 474 (475)
T PLN02167 462 AVKRFIDDLLGDH 474 (475)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988653
No 20
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-57 Score=445.15 Aligned_cols=419 Identities=28% Similarity=0.501 Sum_probs=310.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEe--CccchhHHhhccccccccccCCCCceEEecCCCCCCCCC-C
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLN--TEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP-R 81 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rG--H~Vt~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 81 (460)
-||+++|+|++||++|++.||+.|+.+| +.||+.. ++.+...+.......... .++++|..+|.+.+.... .
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSS---FPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCC---CCCeEEEEcCCCCCCCCccc
Confidence 4999999999999999999999999998 5666644 433222222110000001 235899999876532211 1
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcC-C-CCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccC-
Q 012587 82 TPDKFPELVDSLNCATPPLLKEMVSDS-K-SPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA- 158 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~- 158 (460)
...+....+......+.+.+.++++++ . .++++||+|.+..|+..+|+++|||++.++++++.....+.+++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 112333344344445677778888876 2 2459999999999999999999999999999999888777665421100
Q ss_pred -C---------CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC--Cce
Q 012587 159 -G---------ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC--PNI 226 (460)
Q Consensus 159 -~---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~--~~~ 226 (460)
. ..|....++..+++.++.. ........+........+++.+++|||++||+..++.++. .. +++
T Consensus 161 ~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~-~~~~~~v 237 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPPMKGSDMPKAVLE--RDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE-ELCFRNI 237 (451)
T ss_pred cccccccCCeecCCCCCCCChHHCchhhcC--CchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh-cCCCCCE
Confidence 0 0111112455566654432 1122334444444556778899999999999999999876 42 589
Q ss_pred eEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccC
Q 012587 227 YSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPD 306 (460)
Q Consensus 227 ~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 306 (460)
+.|||+...... .+ +.. ..+.++.+|||.+++++||||||||....+.+++++++.+|+.++.+|||+++.+
T Consensus 238 ~~vGPl~~~~~~--~~-----~~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~ 309 (451)
T PLN03004 238 YPIGPLIVNGRI--ED-----RND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNP 309 (451)
T ss_pred EEEeeeccCccc--cc-----ccc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 999999742110 00 010 1235688999988889999999999999999999999999999999999999843
Q ss_pred CCCCC--CC-CCCCchHHHHHhcC-CceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHH
Q 012587 307 LISGK--DG-ENQIPEELLEATKE-RGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSR 382 (460)
Q Consensus 307 ~~~~~--~~-~~~~~~~~~~~~~~-n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~ 382 (460)
..... .. ...+|++|.++..+ |+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 310 ~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~ 389 (451)
T PLN03004 310 PELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRV 389 (451)
T ss_pred ccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHH
Confidence 11000 01 11378889887654 6667799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceeeeec-C---CcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 012587 383 FVGEVWKLGLDIK-D---LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYC 441 (460)
Q Consensus 383 ~~~e~~G~g~~~~-~---~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 441 (460)
++++++|+|+.++ . ..++++|+++|+++|.+ ++||++++++++..+.++++||+|.+
T Consensus 390 ~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~--~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 390 MIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE--CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9975689999996 2 47999999999999998 89999999999999999999999764
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=8.6e-57 Score=440.12 Aligned_cols=416 Identities=23% Similarity=0.328 Sum_probs=308.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEec--C--CCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTL--T--DGLPRDHPR 81 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~ 81 (460)
..||+++|+|++||++|++.||+.|+++|++|||++++.+...+...... .+++.|..+ | ++++++..
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~-------~~~i~~~~i~lP~~dGLP~g~e- 75 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLF-------PDSIVFEPLTLPPVDGLPFGAE- 75 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccC-------CCceEEEEecCCCcCCCCCccc-
Confidence 46999999999999999999999999999999999998776665443210 123666444 3 46665521
Q ss_pred CCCCh----HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhcccccc
Q 012587 82 TPDKF----PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIID 157 (460)
Q Consensus 82 ~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 157 (460)
...++ ...+......+.+.++++++.. +||+||+|. +.|+..+|+++|||++.++++++.......+ +....
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~~~ 151 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRAEL 151 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHhhc
Confidence 11122 2223333334556667777665 899999995 7899999999999999999999887766554 11100
Q ss_pred CCCCCCCC----CccCCCC--CCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC-CceeEeC
Q 012587 158 AGELPIKG----FLRCRDL--PSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC-PNIYSIG 230 (460)
Q Consensus 158 ~~~~p~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~-~~~~~vG 230 (460)
....|... .++..+. +.++. .....+.+......+++.+++|||++||+..++.++. .. ++++.||
T Consensus 152 ~~~~pg~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~-~~~~~v~~VG 224 (446)
T PLN00414 152 GFPPPDYPLSKVALRGHDANVCSLFA------NSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIER-QCQRKVLLTG 224 (446)
T ss_pred CCCCCCCCCCcCcCchhhcccchhhc------ccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHH-hcCCCeEEEc
Confidence 00011000 0111111 11111 0112233333445678899999999999999999887 54 5799999
Q ss_pred ccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCC
Q 012587 231 PLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISG 310 (460)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 310 (460)
|+....... +-...++++.+|||.+++++||||||||....+.+++.+++.+|+..+.+|+|++..+...+
T Consensus 225 Pl~~~~~~~---------~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~ 295 (446)
T PLN00414 225 PMLPEPQNK---------SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS 295 (446)
T ss_pred ccCCCcccc---------cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc
Confidence 997532110 00012345889999999999999999999999999999999999999999999997532110
Q ss_pred CCCCCCCchHHHHHhcCCceee-eecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhc
Q 012587 311 KDGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWK 389 (460)
Q Consensus 311 ~~~~~~~~~~~~~~~~~n~~~~-~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G 389 (460)
.....+|++|.++..++.+++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++++|
T Consensus 296 -~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g 374 (446)
T PLN00414 296 -TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELE 374 (446)
T ss_pred -cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhC
Confidence 012258999999888777776 999999999999999999999999999999999999999999999999999976799
Q ss_pred eeeeecC----CcchHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 012587 390 LGLDIKD----LCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMMS 454 (460)
Q Consensus 390 ~g~~~~~----~~~~~~l~~~i~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 454 (460)
+|+.+.+ .+++++|+++++++|.+ ++.++|++++++++.+.+. ||++ ..+++||+++....
T Consensus 375 ~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~---gg~s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 375 VSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP---GLLS-GYADKFVEALENEV 442 (446)
T ss_pred eEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC---CCcH-HHHHHHHHHHHHhc
Confidence 9999952 38999999999999963 3567999999999998664 6644 44899999996653
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3e-48 Score=386.98 Aligned_cols=399 Identities=17% Similarity=0.173 Sum_probs=280.5
Q ss_pred CcEEEEE-cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCC-------C
Q 012587 6 HVHVAIL-PLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLP-------R 77 (460)
Q Consensus 6 ~~~il~~-~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 77 (460)
..||+.+ |.++.+|+.-+-+|+++|++|||+||++++... ...... . ..++....++...+ .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~-~~~~~~-~--------~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLR-VYYASH-L--------CGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccc-cccccC-C--------CCCEEEEEcCCChHHHHHHHhh
Confidence 4689866 778999999999999999999999999976321 111000 0 12344444431000 0
Q ss_pred -CCCCC---CCChHH----HHHHHHhh-----CcHHHHHHHH--cCCCCccEEEEcCCcchHHHHHHHh-CCceEEEecc
Q 012587 78 -DHPRT---PDKFPE----LVDSLNCA-----TPPLLKEMVS--DSKSPVNCIITDGYMSRAIDAAREV-GVSIIYFRTI 141 (460)
Q Consensus 78 -~~~~~---~~~~~~----~~~~~~~~-----~~~~l~~~~~--~~~~~pD~vv~D~~~~~~~~~A~~l-giP~v~~~~~ 141 (460)
..... ..+... ....+... ..+.+.++++ + .++|+||+|.+..|+..+|+++ ++|+|.+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~ 167 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSG 167 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCC
Confidence 00000 000000 01111111 2445567775 4 3799999998888999999999 9999998886
Q ss_pred hhHHHHHHhhcc-ccccCCCCCCCC---------CccCCCCCCcccC-------CCCCChHHHHHH-----HHhhhhcCC
Q 012587 142 SACAFWSFHCIP-DIIDAGELPIKG---------FLRCRDLPSFCRV-------NDPMDPHLLLFA-----RETRLSAHA 199 (460)
Q Consensus 142 ~~~~~~~~~~~~-~~~~~~~~p~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~~ 199 (460)
....... ..++ .+.++.++|... |.|..+....... ....+.+.+... ...+...+.
T Consensus 168 ~~~~~~~-~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 168 YGLAENF-ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRV 246 (507)
T ss_pred CCchhHH-HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCC
Confidence 5543322 2233 555566666432 2333332110000 001111111110 011334567
Q ss_pred CEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCccc
Q 012587 200 DGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAV 279 (460)
Q Consensus 200 ~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~ 279 (460)
+.+|+|+.+.+++| ++ .+|++++|||+........ +.++++.+|++.. ++++|||||||...
T Consensus 247 ~l~lvns~~~~d~~-----rp-~~p~v~~vGgi~~~~~~~~-----------~l~~~l~~fl~~~-~~g~V~vS~GS~~~ 308 (507)
T PHA03392 247 QLLFVNVHPVFDNN-----RP-VPPSVQYLGGLHLHKKPPQ-----------PLDDYLEEFLNNS-TNGVVYVSFGSSID 308 (507)
T ss_pred cEEEEecCccccCC-----CC-CCCCeeeecccccCCCCCC-----------CCCHHHHHHHhcC-CCcEEEEECCCCCc
Confidence 79999999988887 77 8899999999986432110 2466789999853 56899999999864
Q ss_pred ---CCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChh
Q 012587 280 ---MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWN 356 (460)
Q Consensus 280 ---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~g 356 (460)
.+.++++.+++++++++.++||+.++. ..+. ..++|+++.+|+||.+||+|+.+++||||||.|
T Consensus 309 ~~~~~~~~~~~~l~a~~~l~~~viw~~~~~---------~~~~----~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~ 375 (507)
T PHA03392 309 TNDMDNEFLQMLLRTFKKLPYNVLWKYDGE---------VEAI----NLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQ 375 (507)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCC---------cCcc----cCCCceEEecCCCHHHHhcCCCCCEEEecCCcc
Confidence 467889999999999999999998632 1111 156899999999999999999888999999999
Q ss_pred HHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhc
Q 012587 357 STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNK 435 (460)
Q Consensus 357 s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~ 435 (460)
|++||+++|||||++|+.+||+.||+|+ +++|+|+.++ .+++.++|.++|+++|+| ++||+||+++++.+++.
T Consensus 376 s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~~~t~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~--- 449 (507)
T PHA03392 376 STDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTVTVSAAQLVLAIVDVIEN--PKYRKNLKELRHLIRHQ--- 449 (507)
T ss_pred cHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccCCcCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999999 4899999998 689999999999999999 99999999999999985
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 012587 436 GGSSYCNLDRLVNDIKMMS 454 (460)
Q Consensus 436 ~g~~~~~~~~~~~~l~~~~ 454 (460)
.-+..+.+...+|.+..+.
T Consensus 450 p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 450 PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4345667778888877764
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=4.8e-49 Score=399.63 Aligned_cols=394 Identities=23% Similarity=0.309 Sum_probs=225.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCC-CCCh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT-PDKF 86 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (460)
||+++|. +.+|+.++.+|+++|++|||+||++++ .....+... + ...+++..++...+...... ....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~-~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTP-SPSSSLNPS-K--------PSNIRFETYPDPYPEEEFEEIFPEF 70 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHH-HHHHT---------------S-CCEEEE-----TT------TTH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEe-ecccccccc-c--------ccceeeEEEcCCcchHHHhhhhHHH
Confidence 7888885 779999999999999999999999987 322222211 1 22366666655444322111 1111
Q ss_pred --------------HHHHHHH---Hh----hC-----cHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 87 --------------PELVDSL---NC----AT-----PPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 87 --------------~~~~~~~---~~----~~-----~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
...+... .. .| ...+.+.+++ .++|++|+|.+..|+..+|+.+++|.+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 71 ISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 0111110 00 01 0111222333 2799999999988999999999999988665
Q ss_pred chhHHHHHHhhccccccCCCCCCCC---------CccCCCCCCccc----------C-CCCCChHHHHHHHHhhhhcCCC
Q 012587 141 ISACAFWSFHCIPDIIDAGELPIKG---------FLRCRDLPSFCR----------V-NDPMDPHLLLFARETRLSAHAD 200 (460)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~ 200 (460)
..+.........+.+.+++++|... +.|..+....+. . ......................
T Consensus 149 ~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PF00201_consen 149 STPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNAS 228 (500)
T ss_dssp CCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHH
T ss_pred ccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHH
Confidence 4332221111113334455555321 122222210000 0 0000000000000011122344
Q ss_pred EEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccC
Q 012587 201 GLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVM 280 (460)
Q Consensus 201 ~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~ 280 (460)
.+++|+.+.++.| +| ..|++++||++......+ .++++.+|++..+++++|||||||....
T Consensus 229 l~l~ns~~~ld~p-----rp-~~p~v~~vGgl~~~~~~~-------------l~~~~~~~~~~~~~~~vv~vsfGs~~~~ 289 (500)
T PF00201_consen 229 LVLINSHPSLDFP-----RP-LLPNVVEVGGLHIKPAKP-------------LPEELWNFLDSSGKKGVVYVSFGSIVSS 289 (500)
T ss_dssp HCCSSTEEE---------HH-HHCTSTTGCGC-S----T-------------CHHHHHHHTSTTTTTEEEEEE-TSSSTT
T ss_pred HHhhhccccCcCC-----cc-hhhcccccCccccccccc-------------cccccchhhhccCCCCEEEEecCcccch
Confidence 5666776666555 77 889999999997655432 3566888998646889999999999754
Q ss_pred CH-HHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHH
Q 012587 281 SR-DQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTL 359 (460)
Q Consensus 281 ~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~ 359 (460)
-+ +..+.+++++++++.+|||++.+. .+.. +++|+++++|+||.+||.|+++++||||||+||++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~iW~~~~~----------~~~~----l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~ 355 (500)
T PF00201_consen 290 MPEEKLKEIAEAFENLPQRFIWKYEGE----------PPEN----LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQ 355 (500)
T ss_dssp -HHHHHHHHHHHHHCSTTEEEEEETCS----------HGCH----HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHH
T ss_pred hHHHHHHHHHHHHhhCCCccccccccc----------cccc----ccceEEEeccccchhhhhcccceeeeeccccchhh
Confidence 44 447889999999999999999531 1121 56899999999999999999999999999999999
Q ss_pred HHHHhCCceecccccccchhhHHHHHhhhceeeeec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCC
Q 012587 360 ESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGS 438 (460)
Q Consensus 360 eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~ 438 (460)
||+++|||||++|+++||+.||++++ +.|+|+.++ ++++.++|.++|+++|+| ++|++||+++++.+++. .-.
T Consensus 356 Ea~~~gvP~l~~P~~~DQ~~na~~~~-~~G~g~~l~~~~~~~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~---p~~ 429 (500)
T PF00201_consen 356 EALYHGVPMLGIPLFGDQPRNAARVE-EKGVGVVLDKNDLTEEELRAAIREVLEN--PSYKENAKRLSSLFRDR---PIS 429 (500)
T ss_dssp HHHHCT--EEE-GCSTTHHHHHHHHH-HTTSEEEEGGGC-SHHHHHHHHHHHHHS--HHHHHHHHHHHHTTT--------
T ss_pred hhhhccCCccCCCCcccCCccceEEE-EEeeEEEEEecCCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcC---CCC
Confidence 99999999999999999999999994 789999998 799999999999999999 99999999999999986 334
Q ss_pred hHHHHHHHHHHHHhh
Q 012587 439 SYCNLDRLVNDIKMM 453 (460)
Q Consensus 439 ~~~~~~~~~~~l~~~ 453 (460)
..+.+...+|.+..+
T Consensus 430 p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 430 PLERAVWWIEYVARH 444 (500)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHhc
Confidence 456667777776654
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=5.6e-43 Score=344.26 Aligned_cols=369 Identities=20% Similarity=0.268 Sum_probs=249.9
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCC---CCCChHH
Q 012587 12 LPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPR---TPDKFPE 88 (460)
Q Consensus 12 ~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 88 (460)
+.+|++||++|+++||++|++|||+|+|++++.+.+.+.+. +++|..++......... ...+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~------------G~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA------------GAEFVLYGSALPPPDNPPENTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc------------CCEEEecCCcCccccccccccCcchHH
Confidence 36899999999999999999999999999998877777654 37777777543321100 0023333
Q ss_pred HHHHHHhhCcHH---HHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCC
Q 012587 89 LVDSLNCATPPL---LKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKG 165 (460)
Q Consensus 89 ~~~~~~~~~~~~---l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (460)
.+..+....... +.+.+++ .+||+||+|.+++++..+|+.+|||+|.+.+.+... ..++... .|...
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~~~~ 138 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SPAGE 138 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----cccch
Confidence 444333322223 3333344 499999999988899999999999999986543211 0111111 01100
Q ss_pred -CccCCCCCCcccCCCCCChHHHH---HHHHhhh---------hcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCcc
Q 012587 166 -FLRCRDLPSFCRVNDPMDPHLLL---FARETRL---------SAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPL 232 (460)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~ 232 (460)
+........ . ....+.+. +.+.... .......+....+.|+++ +++..++++++||+
T Consensus 139 ~~~~~~~~~~--~---~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~ 208 (392)
T TIGR01426 139 GSAEEGAIAE--R---GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPC 208 (392)
T ss_pred hhhhhhcccc--c---hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeEEECCC
Confidence 000000000 0 00011111 1111110 011222344444444443 33134679999998
Q ss_pred ccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCC
Q 012587 233 NAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKD 312 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 312 (460)
...... ..+|....+++++||||+||+......+++.+++++++.+.+++|..+.+.
T Consensus 209 ~~~~~~------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~----- 265 (392)
T TIGR01426 209 IGDRKE------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV----- 265 (392)
T ss_pred CCCccc------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC-----
Confidence 754221 112665566889999999998766777888899999999999998885321
Q ss_pred CCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceee
Q 012587 313 GENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 392 (460)
Q Consensus 313 ~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~ 392 (460)
....+ ...++|+.+.+|+||.++|+++++ +|||||.||++||+++|+|+|++|...||..||+++ +++|+|.
T Consensus 266 ----~~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~~g~g~ 337 (392)
T TIGR01426 266 ----DPADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AELGLGR 337 (392)
T ss_pred ----ChhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HHCCCEE
Confidence 01111 125679999999999999999997 999999999999999999999999999999999999 5899999
Q ss_pred eec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012587 393 DIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 450 (460)
Q Consensus 393 ~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 450 (460)
.+. .++++++|.++|+++|+| ++|++++++++++++.. + ... .+.++|+.+
T Consensus 338 ~l~~~~~~~~~l~~ai~~~l~~--~~~~~~~~~l~~~~~~~---~-~~~-~aa~~i~~~ 389 (392)
T TIGR01426 338 HLPPEEVTAEKLREAVLAVLSD--PRYAERLRKMRAEIREA---G-GAR-RAADEIEGF 389 (392)
T ss_pred EeccccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHc---C-CHH-HHHHHHHHh
Confidence 997 688999999999999999 99999999999999985 3 333 445555554
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.3e-43 Score=348.59 Aligned_cols=378 Identities=16% Similarity=0.151 Sum_probs=242.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCC--C---
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP--R--- 81 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 81 (460)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...+.. . +++|.+++........ .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~-----------G~~~~~~~~~~~~~~~~~~~~~ 68 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-A-----------GLEFVPVGGDPDELLASPERNA 68 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-c-----------CCceeeCCCCHHHHHhhhhhcc
Confidence 699999999999999999999999999999999999766555543 3 3777777653321100 0
Q ss_pred -----CCCChHHHHHHHHhhCcHHHHHHHHcC-CCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhcccc
Q 012587 82 -----TPDKFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (460)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (460)
...........+.......++++++.+ ..+||+||+|.+..++..+|+++|||+|.+++.+....... +.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~---~~~ 145 (401)
T cd03784 69 GLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF---PPP 145 (401)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC---CCc
Confidence 011112222223322333333444332 24999999999888999999999999999998754321110 000
Q ss_pred ccCCCCCCCCCccCCCCCCccc---CCCCCChHHHHHHHHhhhhc------CCCEEEEcChhhhchhHHHHHhhcCCCce
Q 012587 156 IDAGELPIKGFLRCRDLPSFCR---VNDPMDPHLLLFARETRLSA------HADGLILNTFEDLEGPILSQIRNHSCPNI 226 (460)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~le~p~~~~~~~~~~~~~ 226 (460)
. .+.. ........ .............+...... .....+....+.+.++ +++..++.
T Consensus 146 ~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 211 (401)
T cd03784 146 L--------GRAN-LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP-----PPDWPRFD 211 (401)
T ss_pred c--------chHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC-----CCCccccC
Confidence 0 0000 00000000 00000001111111111100 0112222222222222 22122455
Q ss_pred eEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCH-HHHHHHHHHHhhCCCcEEEEEcc
Q 012587 227 YSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSR-DQLIEFYYGLVHSKKSFLWVIRP 305 (460)
Q Consensus 227 ~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~ 305 (460)
.++|......+.. ...+.++..|++. ++++||||+||+..... .++..++++++..+.++||.++.
T Consensus 212 ~~~g~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~ 278 (401)
T cd03784 212 LVTGYGFRDVPYN-----------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGW 278 (401)
T ss_pred cEeCCCCCCCCCC-----------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccC
Confidence 6665332211111 0234556778864 68999999999986554 56788899999999999999864
Q ss_pred CCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHH
Q 012587 306 DLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVG 385 (460)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~ 385 (460)
.... . ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||+++
T Consensus 279 ~~~~--------~----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~- 343 (401)
T cd03784 279 GGLG--------A----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARV- 343 (401)
T ss_pred cccc--------c----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH-
Confidence 3111 1 124679999999999999999998 999999999999999999999999999999999999
Q ss_pred hhhceeeeec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012587 386 EVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVND 449 (460)
Q Consensus 386 e~~G~g~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 449 (460)
+++|+|+.+. .+++.++|.++++++|++ .++++++++++++++. +| ...+.++|+.
T Consensus 344 ~~~G~g~~l~~~~~~~~~l~~al~~~l~~---~~~~~~~~~~~~~~~~---~g--~~~~~~~ie~ 400 (401)
T cd03784 344 AELGAGPALDPRELTAERLAAALRRLLDP---PSRRRAAALLRRIREE---DG--VPSAADVIER 400 (401)
T ss_pred HHCCCCCCCCcccCCHHHHHHHHHHHhCH---HHHHHHHHHHHHHHhc---cC--HHHHHHHHhh
Confidence 5899999997 568999999999999985 4666777777777653 33 4455566554
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-43 Score=342.46 Aligned_cols=385 Identities=20% Similarity=0.249 Sum_probs=251.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCC-CCCC----CC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDG-LPRD----HP 80 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~ 80 (460)
+|||+|+..|+.||++|+++||++|.++||+|+|+|++.+.+.+.+. ++.|..++.. .+.. ..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a------------g~~f~~~~~~~~~~~~~~~~~ 68 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA------------GLAFVAYPIRDSELATEDGKF 68 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh------------CcceeeccccCChhhhhhhhh
Confidence 58999999999999999999999999999999999998888888765 2555555532 1111 11
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHh-hccccccCC
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFH-CIPDIIDAG 159 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~ 159 (460)
...+.+......+. .....+.+++.+. .||+|+.|...+.+ .+++..++|++.............. .++.....+
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (406)
T COG1819 69 AGVKSFRRLLQQFK-KLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG 144 (406)
T ss_pred hccchhHHHhhhhh-hhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc
Confidence 11222222222222 2344455666665 99999999776655 8899999999887665443322211 111111111
Q ss_pred CCCCCCCccCCCCCCcccC-CCCCCh-HHHHHHHHhhhhc-C--CCEEEEcChhhhchhHHHHH----hhcCCCceeEeC
Q 012587 160 ELPIKGFLRCRDLPSFCRV-NDPMDP-HLLLFARETRLSA-H--ADGLILNTFEDLEGPILSQI----RNHSCPNIYSIG 230 (460)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~-~--~~~~l~~~~~~le~p~~~~~----~~~~~~~~~~vG 230 (460)
..+. +...++..... ...... ......+...... . ....++.+-+.++....+.. +. .+....++|
T Consensus 145 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~ 219 (406)
T COG1819 145 KLPI----PLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR-LPFIGPYIG 219 (406)
T ss_pred cccc----cccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC-CCCCcCccc
Confidence 1110 00001000000 000000 0000000000000 0 00001111111111111100 11 122344555
Q ss_pred ccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCC
Q 012587 231 PLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISG 310 (460)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 310 (460)
|+..... .++..|. ..++++||+|+||.... .++++.+.+++..+++++|+..+..
T Consensus 220 ~~~~~~~-----------------~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~---- 275 (406)
T COG1819 220 PLLGEAA-----------------NELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA---- 275 (406)
T ss_pred ccccccc-----------------ccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc----
Confidence 5554333 2233343 33799999999999876 8899999999999999999998531
Q ss_pred CCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhce
Q 012587 311 KDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKL 390 (460)
Q Consensus 311 ~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~ 390 (460)
. ....+ .++|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|+ |++|+
T Consensus 276 --~-~~~~~-----~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv-e~~G~ 344 (406)
T COG1819 276 --R-DTLVN-----VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV-EELGA 344 (406)
T ss_pred --c-ccccc-----CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH-HHcCC
Confidence 0 01122 6789999999999999999998 999999999999999999999999999999999999 68999
Q ss_pred eeeec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 012587 391 GLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 453 (460)
Q Consensus 391 g~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 453 (460)
|..+. ..++.+.|+++|+++|.| +.|+++++++++.+++. +| .+.+.++++++...
T Consensus 345 G~~l~~~~l~~~~l~~av~~vL~~--~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 345 GIALPFEELTEERLRAAVNEVLAD--DSYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred ceecCcccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 99998 699999999999999999 99999999999999997 55 56667788776554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.2e-38 Score=319.63 Aligned_cols=413 Identities=27% Similarity=0.378 Sum_probs=249.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
..+++++++|++||++|++.+|+.|+++||+||++++..................+....+.+...+++++.........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 35788889999999999999999999999999999986654443321100000000000111111111222221000001
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcC----CCCccEEEEcCCcchHHHHHHHhC-CceEEEecchhHHHHHHhhccccccCCC
Q 012587 86 FPELVDSLNCATPPLLKEMVSDS----KSPVNCIITDGYMSRAIDAAREVG-VSIIYFRTISACAFWSFHCIPDIIDAGE 160 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~----~~~pD~vv~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.......+...+...+++..... ..++|++|+|.+..+...+|...+ |+...+.+........... .+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~----~~~~~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP----SPLSY 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc----Ccccc
Confidence 11112223323333333322222 224999999998666666666664 8887777766655443221 11112
Q ss_pred CCCCC----------CccCCCCC-----CcccCCCC---CChHHHHH--------HHHhhhhcCCCEEEEcChhhhchhH
Q 012587 161 LPIKG----------FLRCRDLP-----SFCRVNDP---MDPHLLLF--------ARETRLSAHADGLILNTFEDLEGPI 214 (460)
Q Consensus 161 ~p~~~----------~~~~~~~~-----~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~le~p~ 214 (460)
.|... +.+..++. ........ ........ ........+....++|+.+.++.+
T Consensus 161 ~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~- 239 (496)
T KOG1192|consen 161 VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFE- 239 (496)
T ss_pred cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCC-
Confidence 22210 00000000 00000000 00000000 000122233445666665544441
Q ss_pred HHHHhhcCCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCC--cEEEEEecCcc---cCCHHHHHHHH
Q 012587 215 LSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQ--SVIYVSFGSIA---VMSRDQLIEFY 289 (460)
Q Consensus 215 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~V~vs~GS~~---~~~~~~~~~~~ 289 (460)
.++ ..++++.|||+........ .....+|++..+.. ++|||||||+. ..+......++
T Consensus 240 ---~~~-~~~~v~~IG~l~~~~~~~~-------------~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~ 302 (496)
T KOG1192|consen 240 ---PRP-LLPKVIPIGPLHVKDSKQK-------------SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELA 302 (496)
T ss_pred ---CCC-CCCCceEECcEEecCcccc-------------ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHH
Confidence 133 4589999999997633211 11345677765554 99999999998 78899999999
Q ss_pred HHHhhC-CCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhh-hcccccccccccCChhHHHHHHHhCCc
Q 012587 290 YGLVHS-KKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEV-LAHSAVGGFLTHCGWNSTLESIVAGMP 367 (460)
Q Consensus 290 ~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~i-l~~~~~~~~I~HGG~gs~~eal~~GvP 367 (460)
.+++.+ ++.|||+....... .+++++.++.++|+...+|+||.++ |+|+++++||||||+|||+|++++|||
T Consensus 303 ~~l~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP 376 (496)
T KOG1192|consen 303 KALESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVP 376 (496)
T ss_pred HHHHhCCCceEEEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCc
Confidence 999999 88899999743110 1222221112357888899999998 599999999999999999999999999
Q ss_pred eecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012587 368 MICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLV 447 (460)
Q Consensus 368 ~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 447 (460)
||++|+++||+.||++++++.++++....+.+...+.+++.+++++ ++|+++++++++.+++. .... +.+...+
T Consensus 377 ~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~--~~y~~~~~~l~~~~~~~---p~~~-~~~~~~~ 450 (496)
T KOG1192|consen 377 MVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILEN--EEYKEAAKRLSEILRDQ---PISP-ELAVKWV 450 (496)
T ss_pred eecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcC--hHHHHHHHHHHHHHHcC---CCCH-HHHHHHH
Confidence 9999999999999999975544444444566666699999999999 99999999999998864 4444 4445444
Q ss_pred HHHHh
Q 012587 448 NDIKM 452 (460)
Q Consensus 448 ~~l~~ 452 (460)
|....
T Consensus 451 e~~~~ 455 (496)
T KOG1192|consen 451 EFVAR 455 (496)
T ss_pred HHHHh
Confidence 54443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=8.4e-27 Score=224.01 Aligned_cols=317 Identities=15% Similarity=0.149 Sum_probs=202.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchh-HHhhccccccccccCCCCceEEecCC-CCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLTD-GLPRDHPRTP 83 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (460)
|.||+|.+.|+.||++|.++||++|.++||+|+|+++....+ .+... .++.+..++. ++.. .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~-----------~g~~~~~~~~~~l~~-----~ 64 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK-----------ENIPYYSISSGKLRR-----Y 64 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc-----------cCCcEEEEeccCcCC-----C
Confidence 458999999999999999999999999999999999755433 22111 1366666652 1111 1
Q ss_pred CChHHHHHHHHhh--CcHHHHHHHHcCCCCccEEEEcCCcc--hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCC
Q 012587 84 DKFPELVDSLNCA--TPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (460)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
..+ ..+...... ..-....++++. +||+|++...+. .+..+|..+|+|++...........
T Consensus 65 ~~~-~~~~~~~~~~~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~------------ 129 (352)
T PRK12446 65 FDL-KNIKDPFLVMKGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLA------------ 129 (352)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHH------------
Confidence 111 112221111 122334567776 999999876544 4789999999999886554211100
Q ss_pred CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC--CceeEeCccccccc
Q 012587 160 ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC--PNIYSIGPLNAHLK 237 (460)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~--~~~~~vG~~~~~~~ 237 (460)
.+.+. +..+. ++.+|++. .. .+ .+++++|+...+.-
T Consensus 130 --------------------------nr~~~------~~a~~-v~~~f~~~--------~~-~~~~~k~~~tG~Pvr~~~ 167 (352)
T PRK12446 130 --------------------------NKIAL------RFASK-IFVTFEEA--------AK-HLPKEKVIYTGSPVREEV 167 (352)
T ss_pred --------------------------HHHHH------HhhCE-EEEEccch--------hh-hCCCCCeEEECCcCCccc
Confidence 01111 22222 23444321 11 22 35789997765432
Q ss_pred cCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHH-HHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCC
Q 012587 238 VRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRD-QLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQ 316 (460)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 316 (460)
... ..+...+.+...+++++|+|..||......+ .+..++..+. .+.+++|.++.+ .
T Consensus 168 ~~~------------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~---------~ 225 (352)
T PRK12446 168 LKG------------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKG---------N 225 (352)
T ss_pred ccc------------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCc---------h
Confidence 110 1111222222234689999999999865543 2333444443 247888888532 1
Q ss_pred CchHHHHHhcCCceeeeec-C-hHhhhcccccccccccCChhHHHHHHHhCCceeccccc-----ccchhhHHHHHhhhc
Q 012587 317 IPEELLEATKERGCIAGWV-P-QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF-----ADQQINSRFVGEVWK 389 (460)
Q Consensus 317 ~~~~~~~~~~~n~~~~~~v-p-~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~-----~DQ~~na~~~~e~~G 389 (460)
+.... +. .+++.+.+|+ + ..++|+.+++ +|||||.+|++|++++|+|+|++|+. .||..||+.++ +.|
T Consensus 226 ~~~~~-~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~-~~g 300 (352)
T PRK12446 226 LDDSL-QN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFE-RQG 300 (352)
T ss_pred HHHHH-hh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHH-HCC
Confidence 11111 11 1355666887 4 5789999997 99999999999999999999999974 48999999995 789
Q ss_pred eeeeec-CCcchHHHHHHHHHHHhHhHH-HHHHHHHH
Q 012587 390 LGLDIK-DLCDRNIVEKAVNDLMVERKE-EFMESADR 424 (460)
Q Consensus 390 ~g~~~~-~~~~~~~l~~~i~~~l~~~~~-~~~~~a~~ 424 (460)
+|..+. ++++++.|.+++.++++| + .+++++++
T Consensus 301 ~~~~l~~~~~~~~~l~~~l~~ll~~--~~~~~~~~~~ 335 (352)
T PRK12446 301 YASVLYEEDVTVNSLIKHVEELSHN--NEKYKTALKK 335 (352)
T ss_pred CEEEcchhcCCHHHHHHHHHHHHcC--HHHHHHHHHH
Confidence 999997 789999999999999986 4 45554444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=2.4e-26 Score=220.00 Aligned_cols=303 Identities=16% Similarity=0.170 Sum_probs=191.2
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 7 VHVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~-~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
|||+|.+.+ +.||+.++++|+++| |||+|+|++.....+.+.+. +....++.............
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 65 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-------------FPVREIPGLGPIQENGRLDR 65 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-------------cCEEEccCceEeccCCccch
Confidence 699999887 999999999999999 69999999986554444332 33333332111111101111
Q ss_pred hHHHHHHH-----HhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCC
Q 012587 86 FPELVDSL-----NCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGE 160 (460)
Q Consensus 86 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
........ .......+.+.+++. +||+||+|. .+.+..+|+..|||++.+.......... . ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~-~--~~------ 133 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLREF--RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN-F--WL------ 133 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc-C--Cc------
Confidence 11111111 111223334455554 999999995 4557788999999999988764322100 0 00
Q ss_pred CCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhh--hcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCcccccccc
Q 012587 161 LPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRL--SAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKV 238 (460)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~ 238 (460)
. ..........+.... .......+..+++ .+ .. ...+..++||+......
T Consensus 134 ----------------~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-----~~-~~~~~~~~~p~~~~~~~ 185 (318)
T PF13528_consen 134 ----------------P---WDQDFGRLIERYIDRYHFPPADRRLALSFY---PP-----LP-PFFRVPFVGPIIRPEIR 185 (318)
T ss_pred ----------------c---hhhhHHHHHHHhhhhccCCcccceecCCcc---cc-----cc-ccccccccCchhccccc
Confidence 0 001111111111111 2333334434432 11 11 22346678877754331
Q ss_pred CCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCC-CcEEEEEccCCCCCCCCCCCC
Q 012587 239 RIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK-KSFLWVIRPDLISGKDGENQI 317 (460)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~ 317 (460)
. .. ..+++.|+|++|..... .++++++..+ +++++. +...
T Consensus 186 ~--------------------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~---------- 226 (318)
T PF13528_consen 186 E--------------------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA---------- 226 (318)
T ss_pred c--------------------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc----------
Confidence 1 11 12567799999987543 5667777766 566655 3220
Q ss_pred chHHHHHhcCCceeeeec--ChHhhhcccccccccccCChhHHHHHHHhCCceecccc--cccchhhHHHHHhhhceeee
Q 012587 318 PEELLEATKERGCIAGWV--PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS--FADQQINSRFVGEVWKLGLD 393 (460)
Q Consensus 318 ~~~~~~~~~~n~~~~~~v--p~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~--~~DQ~~na~~~~e~~G~g~~ 393 (460)
. +...+|+.+.+|. ...++|+.|++ +|+|||.||++||+++|+|+|++|. ..||..||+++ +++|+|..
T Consensus 227 ~----~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l-~~~G~~~~ 299 (318)
T PF13528_consen 227 A----DPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL-EELGLGIV 299 (318)
T ss_pred c----cccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH-HHCCCeEE
Confidence 0 1135799998876 46889999997 9999999999999999999999999 67999999999 68999999
Q ss_pred ec-CCcchHHHHHHHHHH
Q 012587 394 IK-DLCDRNIVEKAVNDL 410 (460)
Q Consensus 394 ~~-~~~~~~~l~~~i~~~ 410 (460)
+. ++++++.|+++|+++
T Consensus 300 ~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 300 LSQEDLTPERLAEFLERL 317 (318)
T ss_pred cccccCCHHHHHHHHhcC
Confidence 98 799999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.4e-22 Score=190.70 Aligned_cols=324 Identities=19% Similarity=0.213 Sum_probs=202.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGI-KITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
++|++...++-||++|.++|+++|.++|+ +|.++.+....+..... ..++.++.++.+...... ....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~----------~~~~~~~~I~~~~~~~~~-~~~~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK----------QYGIEFELIPSGGLRRKG-SLKL 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc----------ccCceEEEEecccccccC-cHHH
Confidence 48999999999999999999999999999 58887664444432221 224777777653333221 1111
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc--hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCC
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPI 163 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (460)
....+..+. ...+.+.++++. +||+|+.-..+. .+..+|..+|||++.+.........
T Consensus 70 ~~~~~~~~~--~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~a---------------- 129 (357)
T COG0707 70 LKAPFKLLK--GVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLA---------------- 129 (357)
T ss_pred HHHHHHHHH--HHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchh----------------
Confidence 222222222 335568888887 999999855544 6888999999999997664221100
Q ss_pred CCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccc-cccCCCc
Q 012587 164 KGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAH-LKVRIPE 242 (460)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~-~~~~~~~ 242 (460)
.+... ...+ .+..+|+..+.. . ...+++.+|-.... ... .+
T Consensus 130 ----------------------nk~~~------~~a~-~V~~~f~~~~~~----~---~~~~~~~tG~Pvr~~~~~-~~- 171 (357)
T COG0707 130 ----------------------NKILS------KFAK-KVASAFPKLEAG----V---KPENVVVTGIPVRPEFEE-LP- 171 (357)
T ss_pred ----------------------HHHhH------Hhhc-eeeecccccccc----C---CCCceEEecCcccHHhhc-cc-
Confidence 01111 1111 223333321100 0 11357888844332 221 10
Q ss_pred cccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHH-HHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHH
Q 012587 243 KTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRD-QLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEEL 321 (460)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 321 (460)
.. ...+ +...++++|+|.-||++...-+ .+..+...+.+ +..+++.++.+ .+ ...
T Consensus 172 -----------~~-~~~~-~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~---------~~-~~~ 227 (357)
T COG0707 172 -----------AA-EVRK-DGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN---------DL-EEL 227 (357)
T ss_pred -----------hh-hhhh-hccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc---------hH-HHH
Confidence 00 0111 1122689999999999754332 22223333332 46777777432 11 111
Q ss_pred HHH-hcCC-ceeeeecCh-HhhhcccccccccccCChhHHHHHHHhCCceeccccc----ccchhhHHHHHhhhceeeee
Q 012587 322 LEA-TKER-GCIAGWVPQ-EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF----ADQQINSRFVGEVWKLGLDI 394 (460)
Q Consensus 322 ~~~-~~~n-~~~~~~vp~-~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~----~DQ~~na~~~~e~~G~g~~~ 394 (460)
... ...+ +.+.+|+.+ ..+++.+++ +||++|.+|+.|++++|+|++.+|.- .||..||+.+ ++.|.|..+
T Consensus 228 ~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l-~~~gaa~~i 304 (357)
T COG0707 228 KSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL-EKAGAALVI 304 (357)
T ss_pred HHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH-HhCCCEEEe
Confidence 111 1123 667799885 788888887 99999999999999999999999973 3899999999 588999999
Q ss_pred c-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 012587 395 K-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKK 431 (460)
Q Consensus 395 ~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~ 431 (460)
+ .++|.+.|.+.|.+++++ .++.++|++..++
T Consensus 305 ~~~~lt~~~l~~~i~~l~~~-----~~~l~~m~~~a~~ 337 (357)
T COG0707 305 RQSELTPEKLAELILRLLSN-----PEKLKAMAENAKK 337 (357)
T ss_pred ccccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHh
Confidence 8 689999999999999985 3445555555555
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=3.8e-23 Score=197.47 Aligned_cols=308 Identities=14% Similarity=0.161 Sum_probs=172.7
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccc-cccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 8 HVAILPLPA-VGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSS-DAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 8 ~il~~~~~~-~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
||+|...+. .||+.|.++|+++|.+ ||+|+|+++.. ...+.+..+ ..+.. .+++.+.. ..+. .+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~-~~~~~~~~~~~~~~~---~p~~~~~~-----~~~~----~~ 66 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR-SKNYISKYGFKVFET---FPGIKLKG-----EDGK----VN 66 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC-HHHhhhhhcCcceec---cCCceEee-----cCCc----Cc
Confidence 688877774 4999999999999999 99999999866 444433323 10111 11112110 0110 11
Q ss_pred hHHHHH---HHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCC
Q 012587 86 FPELVD---SLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELP 162 (460)
Q Consensus 86 ~~~~~~---~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (460)
....+. .+.........++++++ +||+||+| +.+.+..+|..+|||++.+..+... .++..
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~~~~~------- 130 (321)
T TIGR00661 67 IVKTLRNKEYSPKKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------RYPLK------- 130 (321)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------cCCcc-------
Confidence 111111 11011223345666776 99999999 5566788999999999987763211 11110
Q ss_pred CCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCCCc
Q 012587 163 IKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPE 242 (460)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 242 (460)
. +............+ ....+......++... . ..|.+. +.. ..+
T Consensus 131 -------------~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~-~~p~~~--~~~----~~~--- 174 (321)
T TIGR00661 131 -------------T---DLIVYPTMAALRIF--NERCERFIVPDYPFPY--------T-ICPKII--KNM----EGP--- 174 (321)
T ss_pred -------------c---chhHHHHHHHHHHh--ccccceEeeecCCCCC--------C-CCcccc--ccC----CCc---
Confidence 0 00000111111111 1222222223222110 0 111110 000 000
Q ss_pred cccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHH
Q 012587 243 KTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL 322 (460)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 322 (460)
....++.+|.. .+++.|+|.+|+... +.+++++++.+. +.+.+.... ....
T Consensus 175 ---------~~~~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~--------~~~~--- 225 (321)
T TIGR00661 175 ---------LIRYDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE--------VAKN--- 225 (321)
T ss_pred ---------ccchhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC--------CCcc---
Confidence 00111222322 245778888887542 345677776653 223322110 1111
Q ss_pred HHhcCCceeeeecC--hHhhhcccccccccccCChhHHHHHHHhCCceecccccc--cchhhHHHHHhhhceeeeec-CC
Q 012587 323 EATKERGCIAGWVP--QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIK-DL 397 (460)
Q Consensus 323 ~~~~~n~~~~~~vp--~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~~~-~~ 397 (460)
..++|+.+.+|.| ..+.|+.|++ +|||||.+|++||+++|+|++++|... ||..||+.++ ++|+|+.+. .+
T Consensus 226 -~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~~l~~~~ 301 (321)
T TIGR00661 226 -SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGIALEYKE 301 (321)
T ss_pred -ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEEEcChhh
Confidence 1357999999997 5777888887 999999999999999999999999854 8999999994 889999996 34
Q ss_pred cchHHHHHHHHHHHhHhHHHHH
Q 012587 398 CDRNIVEKAVNDLMVERKEEFM 419 (460)
Q Consensus 398 ~~~~~l~~~i~~~l~~~~~~~~ 419 (460)
+ ++.+++.++++| +.|+
T Consensus 302 ~---~~~~~~~~~~~~--~~~~ 318 (321)
T TIGR00661 302 L---RLLEAILDIRNM--KRYK 318 (321)
T ss_pred H---HHHHHHHhcccc--cccc
Confidence 4 555566666666 5554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=2.3e-19 Score=174.61 Aligned_cols=322 Identities=16% Similarity=0.127 Sum_probs=191.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhH-HhhccccccccccCCCCceEEecCCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDR-VIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
||||+|...+..||....+.|+++|.++||+|++++.+..... ..+ ..+++++.++..-..+ .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~-----------~~g~~~~~~~~~~~~~-----~ 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVP-----------KAGIEFHFIPSGGLRR-----K 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc-----------cCCCcEEEEeccCcCC-----C
Confidence 6899999999899999999999999999999999997542211 111 1135555554211011 1
Q ss_pred ChHHHHH---HHHhhCcHHHHHHHHcCCCCccEEEEcCC--cchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCC
Q 012587 85 KFPELVD---SLNCATPPLLKEMVSDSKSPVNCIITDGY--MSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (460)
Q Consensus 85 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
+....+. .+.. ....+.+++++. +||+|++... .+.+..++...++|+|...... . +
T Consensus 65 ~~~~~l~~~~~~~~-~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-~--------~------ 126 (357)
T PRK00726 65 GSLANLKAPFKLLK-GVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA-V--------P------ 126 (357)
T ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-C--------c------
Confidence 1111111 1111 223456667775 9999999863 2346677888999998642210 0 0
Q ss_pred CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccC
Q 012587 160 ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVR 239 (460)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~ 239 (460)
....+... ..++.++..+...+. .. ...++.++|.........
T Consensus 127 -----------------------~~~~r~~~------~~~d~ii~~~~~~~~-------~~-~~~~i~vi~n~v~~~~~~ 169 (357)
T PRK00726 127 -----------------------GLANKLLA------RFAKKVATAFPGAFP-------EF-FKPKAVVTGNPVREEILA 169 (357)
T ss_pred -----------------------cHHHHHHH------HHhchheECchhhhh-------cc-CCCCEEEECCCCChHhhc
Confidence 00001111 122333333211110 01 235678888654322111
Q ss_pred CCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCC--cEEEEEccCCCCCCCCCCCC
Q 012587 240 IPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKK--SFLWVIRPDLISGKDGENQI 317 (460)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~ 317 (460)
. ...-.+ +....++++|++..|+... ......+.++++++.. .+++.++.+ . .
T Consensus 170 ~-------------~~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g------~---~ 224 (357)
T PRK00726 170 L-------------AAPPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG------D---L 224 (357)
T ss_pred c-------------cchhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC------c---H
Confidence 0 000011 1112345677776666432 2222333366555432 344555321 1 1
Q ss_pred chHHHHH--hcCCceeeeecC-hHhhhcccccccccccCChhHHHHHHHhCCceecccc----cccchhhHHHHHhhhce
Q 012587 318 PEELLEA--TKERGCIAGWVP-QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS----FADQQINSRFVGEVWKL 390 (460)
Q Consensus 318 ~~~~~~~--~~~n~~~~~~vp-~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~~~e~~G~ 390 (460)
+.+.+. .+-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+. +.|.
T Consensus 225 -~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~-~~~~ 300 (357)
T PRK00726 225 -EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALV-DAGA 300 (357)
T ss_pred -HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH-HCCC
Confidence 222211 222367779984 5899999998 9999999999999999999999997 368999999995 7899
Q ss_pred eeeec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 012587 391 GLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLA 429 (460)
Q Consensus 391 g~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~ 429 (460)
|..+. ++++++.|.+++.++++| ++++++..+-++++
T Consensus 301 g~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~ 338 (357)
T PRK00726 301 ALLIPQSDLTPEKLAEKLLELLSD--PERLEAMAEAARAL 338 (357)
T ss_pred EEEEEcccCCHHHHHHHHHHHHcC--HHHHHHHHHHHHhc
Confidence 99997 677899999999999998 77776655544443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=8.6e-18 Score=163.13 Aligned_cols=317 Identities=17% Similarity=0.152 Sum_probs=187.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChH
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
||+|.+.++.||....+.|++.|.++||+|++++....... .... ..++++..++..-... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~-----~~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLVP--------KAGIPLHTIPVGGLRR-----KGSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hccc--------ccCCceEEEEecCcCC-----CChH
Confidence 68999999999999999999999999999999987432111 1000 1235565554211111 1111
Q ss_pred HHHHHHH--hhCcHHHHHHHHcCCCCccEEEEcCC--cchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCC
Q 012587 88 ELVDSLN--CATPPLLKEMVSDSKSPVNCIITDGY--MSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPI 163 (460)
Q Consensus 88 ~~~~~~~--~~~~~~l~~~~~~~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (460)
..+.... ......+..++++. +||+|++... ...+..+|...|+|++...... . +
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-~--------~---------- 124 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-V--------P---------- 124 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-C--------c----------
Confidence 1111111 11224456677776 9999998653 3356778899999998632110 0 0
Q ss_pred CCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCCCcc
Q 012587 164 KGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPEK 243 (460)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 243 (460)
. ... +.. ....+.++..+....+. . ...++..+|.........
T Consensus 125 -------------------~-~~~---~~~--~~~~~~vi~~s~~~~~~-----~---~~~~~~~i~n~v~~~~~~---- 167 (350)
T cd03785 125 -------------------G-LAN---RLL--ARFADRVALSFPETAKY-----F---PKDKAVVTGNPVREEILA---- 167 (350)
T ss_pred -------------------c-HHH---HHH--HHhhCEEEEcchhhhhc-----C---CCCcEEEECCCCchHHhh----
Confidence 0 000 110 12345555554322111 0 124577777554321110
Q ss_pred ccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCH-HHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHH
Q 012587 244 TYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSR-DQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL 322 (460)
Q Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 322 (460)
.... ...+....++++|++..|+...... +.+..++..+...+..+++.++.+ . .+.+.
T Consensus 168 ---------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g------~----~~~l~ 227 (350)
T cd03785 168 ---------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG------D----LEEVK 227 (350)
T ss_pred ---------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc------c----HHHHH
Confidence 0000 1122223356677776676643221 122233344433334455555321 1 12222
Q ss_pred HHh---cCCceeeeec-ChHhhhcccccccccccCChhHHHHHHHhCCceecccc----cccchhhHHHHHhhhceeeee
Q 012587 323 EAT---KERGCIAGWV-PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS----FADQQINSRFVGEVWKLGLDI 394 (460)
Q Consensus 323 ~~~---~~n~~~~~~v-p~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~~~e~~G~g~~~ 394 (460)
+.. .+|+.+.+|+ ....+|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+. +.|.|..+
T Consensus 228 ~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~-~~g~g~~v 304 (350)
T cd03785 228 KAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV-KAGAAVLI 304 (350)
T ss_pred HHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-hCCCEEEE
Confidence 222 3688888998 56889999998 9999999999999999999999986 357889999995 67999998
Q ss_pred c-CCcchHHHHHHHHHHHhHhHHHHHHHH
Q 012587 395 K-DLCDRNIVEKAVNDLMVERKEEFMESA 422 (460)
Q Consensus 395 ~-~~~~~~~l~~~i~~~l~~~~~~~~~~a 422 (460)
. .+.+.++|.+++.+++++ ++.+++.
T Consensus 305 ~~~~~~~~~l~~~i~~ll~~--~~~~~~~ 331 (350)
T cd03785 305 PQEELTPERLAAALLELLSD--PERLKAM 331 (350)
T ss_pred ecCCCCHHHHHHHHHHHhcC--HHHHHHH
Confidence 6 457899999999999987 6555443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.76 E-value=2.1e-16 Score=153.28 Aligned_cols=318 Identities=18% Similarity=0.169 Sum_probs=177.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchh-HHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
|||+|++.+..||+...+.|+++|.++||+|++++.+.... .+.+ ..+++++.++..-.. ..+
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~-----------~~g~~~~~i~~~~~~-----~~~ 64 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP-----------KAGIEFYFIPVGGLR-----RKG 64 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc-----------cCCCceEEEeccCcC-----CCC
Confidence 49999999999999988899999999999999998743211 1111 113555555421100 112
Q ss_pred hHHHHHHHHh--hCcHHHHHHHHcCCCCccEEEEcCCcc--hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCC
Q 012587 86 FPELVDSLNC--ATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGEL 161 (460)
Q Consensus 86 ~~~~~~~~~~--~~~~~l~~~~~~~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
+...+..... .....+.+++++. +||+|++..... .+..++..+|+|++..... ..
T Consensus 65 ~~~~l~~~~~~~~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~-~~----------------- 124 (348)
T TIGR01133 65 SFRLIKTPLKLLKAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN-AV----------------- 124 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-CC-----------------
Confidence 2222221111 1223456677775 999999875432 4566788899999743110 00
Q ss_pred CCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCCC
Q 012587 162 PIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIP 241 (460)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 241 (460)
.....+.. . ...+.++..+...-+ .. ...++|..........+
T Consensus 125 --------------------~~~~~~~~----~--~~~d~ii~~~~~~~~----------~~-~~~~i~n~v~~~~~~~~ 167 (348)
T TIGR01133 125 --------------------PGLTNKLL----S--RFAKKVLISFPGAKD----------HF-EAVLVGNPVRQEIRSLP 167 (348)
T ss_pred --------------------ccHHHHHH----H--HHhCeeEECchhHhh----------cC-CceEEcCCcCHHHhccc
Confidence 00000111 1 334555554421110 11 23455533321110000
Q ss_pred ccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhh---CCCcEEEEEccCCCCCCCCCCCCc
Q 012587 242 EKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVH---SKKSFLWVIRPDLISGKDGENQIP 318 (460)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~ 318 (460)
... ..+...+++++|.+..|+... ......+.++++. .+.++++..++. ..
T Consensus 168 ----------~~~----~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~---------~~- 221 (348)
T TIGR01133 168 ----------VPR----ERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN---------DL- 221 (348)
T ss_pred ----------chh----hhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc---------hH-
Confidence 000 112212245556555555542 2222223344433 345565544211 11
Q ss_pred hHHHHHhcC-Cc-eeeeec--ChHhhhcccccccccccCChhHHHHHHHhCCceeccccc---ccchhhHHHHHhhhcee
Q 012587 319 EELLEATKE-RG-CIAGWV--PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF---ADQQINSRFVGEVWKLG 391 (460)
Q Consensus 319 ~~~~~~~~~-n~-~~~~~v--p~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~~~e~~G~g 391 (460)
+.+.+...+ ++ .++.|. ....+|+.+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+. ..|.|
T Consensus 222 ~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~-~~~~G 298 (348)
T TIGR01133 222 EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE-DLGAG 298 (348)
T ss_pred HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH-HCCCE
Confidence 222221111 11 223333 56889999998 99999988999999999999999863 46788888884 78999
Q ss_pred eeec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 012587 392 LDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKK 431 (460)
Q Consensus 392 ~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~ 431 (460)
..+. ++.+++.|.+++.++++| ++.++ +|++..++
T Consensus 299 ~~~~~~~~~~~~l~~~i~~ll~~--~~~~~---~~~~~~~~ 334 (348)
T TIGR01133 299 LVIRQKELLPEKLLEALLKLLLD--PANLE---AMAEAARK 334 (348)
T ss_pred EEEecccCCHHHHHHHHHHHHcC--HHHHH---HHHHHHHh
Confidence 9886 567899999999999997 66554 34444443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=1.2e-16 Score=156.00 Aligned_cols=348 Identities=11% Similarity=0.016 Sum_probs=193.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCC-CCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD-GLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 85 (460)
.||+|++.++.||++|. +|+++|+++|++|.|++.... .+.+.+. ...+++..++- ++. ..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~--------~~~~~~~~l~v~G~~-------~~ 67 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC--------EVLYSMEELSVMGLR-------EV 67 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC--------ccccChHHhhhccHH-------HH
Confidence 48999999999999999 999999999999999986432 3333211 00122222221 110 01
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC-cch--HHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCC
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY-MSR--AIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELP 162 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~-~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (460)
+. .+..+.. ....+..++++. +||+||.-.. .+. ....|+.+|||++.+.+ |- .+..
T Consensus 68 l~-~~~~~~~-~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~--------~waw------- 127 (385)
T TIGR00215 68 LG-RLGRLLK-IRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQ--------VWAW------- 127 (385)
T ss_pred HH-HHHHHHH-HHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-Cc--------Hhhc-------
Confidence 11 1222222 223556777776 9999996433 223 33388999999997542 10 0000
Q ss_pred CCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCCCc
Q 012587 163 IKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPE 242 (460)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 242 (460)
.....+.+.+ .++.+++.+.. +... ... ...+..++|...........
T Consensus 128 -------------------~~~~~r~l~~------~~d~v~~~~~~--e~~~---~~~-~g~~~~~vGnPv~~~~~~~~- 175 (385)
T TIGR00215 128 -------------------RKWRAKKIEK------ATDFLLAILPF--EKAF---YQK-KNVPCRFVGHPLLDAIPLYK- 175 (385)
T ss_pred -------------------CcchHHHHHH------HHhHhhccCCC--cHHH---HHh-cCCCEEEECCchhhhccccC-
Confidence 0001112221 12222222211 1111 122 22356678854432111000
Q ss_pred cccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC-----CCcEEEEEccCCCCCCCCCCCC
Q 012587 243 KTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWVIRPDLISGKDGENQI 317 (460)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~ 317 (460)
....+..+-+....++++|.+-.||....-......++++++.+ +.++++..... ..
T Consensus 176 ---------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~---------~~ 237 (385)
T TIGR00215 176 ---------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF---------KR 237 (385)
T ss_pred ---------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc---------hh
Confidence 01111222222234678888888887643223344455444432 33455544211 01
Q ss_pred chHHH---HHhcCCceeeeec-ChHhhhcccccccccccCChhHHHHHHHhCCceecc----cccc---------cchhh
Q 012587 318 PEELL---EATKERGCIAGWV-PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW----PSFA---------DQQIN 380 (460)
Q Consensus 318 ~~~~~---~~~~~n~~~~~~v-p~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~----P~~~---------DQ~~n 380 (460)
...+. +....+..+..+. ....+++.+++ +|+-+|..|+ |++++|+|+|++ |+.. +|..|
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~ 314 (385)
T TIGR00215 238 RLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISL 314 (385)
T ss_pred HHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeec
Confidence 11111 1111233332221 34668898997 9999999988 999999999999 7632 38889
Q ss_pred HHHHHhhhceeeeec-CCcchHHHHHHHHHHHhHhHH----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012587 381 SRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKE----EFMESADRMANLAKKSVNKGGSSYCNLDRLVN 448 (460)
Q Consensus 381 a~~~~e~~G~g~~~~-~~~~~~~l~~~i~~~l~~~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 448 (460)
++.++ ..++...+. +++|++.|.+.+.++|+| + +++++.++--+.+++...++|.+.++++.+++
T Consensus 315 ~nil~-~~~~~pel~q~~~~~~~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 315 PNILA-NRLLVPELLQEECTPHPLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred cHHhc-CCccchhhcCCCCCHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 99996 668888877 789999999999999998 6 55555544444444444546666666554443
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.74 E-value=7.9e-16 Score=139.32 Aligned_cols=328 Identities=16% Similarity=0.124 Sum_probs=201.6
Q ss_pred CCCCcEEEEEcCC--CCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCC
Q 012587 3 KQDHVHVAILPLP--AVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRD 78 (460)
Q Consensus 3 ~~~~~~il~~~~~--~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (460)
.++++||+|++.- +.||+.+++.||++|.+. |.+|+++++......+. . ..++++..+|.....+
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~---~~gVd~V~LPsl~k~~ 74 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------G---PAGVDFVKLPSLIKGD 74 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------C---cccCceEecCceEecC
Confidence 3567799999986 889999999999999998 99999999855422221 1 3578999998532221
Q ss_pred --CC---CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchH-----HHHHHHh--CCceEEEecchhHHH
Q 012587 79 --HP---RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRA-----IDAAREV--GVSIIYFRTISACAF 146 (460)
Q Consensus 79 --~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~-----~~~A~~l--giP~v~~~~~~~~~~ 146 (460)
+. +...+ ...+.+.-...+...++.+ +||++|+|.+-+.. ..+++.- +-+++..-.
T Consensus 75 ~G~~~~~d~~~~----l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr------ 142 (400)
T COG4671 75 NGEYGLVDLDGD----LEETKKLRSQLILSTAETF--KPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLR------ 142 (400)
T ss_pred CCceeeeecCCC----HHHHHHHHHHHHHHHHHhc--CCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehH------
Confidence 11 11122 2333322234556666666 99999999765531 1111110 101111000
Q ss_pred HHHhhccccccCCCCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhc-CCCc
Q 012587 147 WSFHCIPDIIDAGELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNH-SCPN 225 (460)
Q Consensus 147 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~-~~~~ 225 (460)
-+.+.+.... ..+......+... ...+.+++...|.+..+...+.-+. .-..
T Consensus 143 ---------------------~i~D~p~~~~----~~w~~~~~~~~I~--r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k 195 (400)
T COG4671 143 ---------------------SIRDIPQELE----ADWRRAETVRLIN--RFYDLVLVYGDPDFYDPLTEFPFAPAIRAK 195 (400)
T ss_pred ---------------------hhhhchhhhc----cchhhhHHHHHHH--HhheEEEEecCccccChhhcCCccHhhhhh
Confidence 0111111111 1111111221112 4456777777776554432211110 1156
Q ss_pred eeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhh-CCCc--EEEE
Q 012587 226 IYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVH-SKKS--FLWV 302 (460)
Q Consensus 226 ~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~i~~ 302 (460)
+.++|.+..+.+...++ |.. .+.+..|+||-|... ...+++...++|-.. .+.+ .+++
T Consensus 196 ~~ytG~vq~~~~~~~~p-----------------~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~iv 256 (400)
T COG4671 196 MRYTGFVQRSLPHLPLP-----------------PHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIV 256 (400)
T ss_pred eeEeEEeeccCcCCCCC-----------------CcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEE
Confidence 99999983221111100 111 135567889988654 355667776666554 3444 4555
Q ss_pred EccCCCCCCCCCCCCchHHHH----Hhc--CCceeeeecCh-HhhhcccccccccccCChhHHHHHHHhCCceeccccc-
Q 012587 303 IRPDLISGKDGENQIPEELLE----ATK--ERGCIAGWVPQ-EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF- 374 (460)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~----~~~--~n~~~~~~vp~-~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~- 374 (460)
+++ ..|....+ ..+ +++.+..|-.+ ..++..++. +|+-||+||++|=|.+|+|.|++|..
T Consensus 257 tGP----------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~ 324 (400)
T COG4671 257 TGP----------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAA 324 (400)
T ss_pred eCC----------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCC
Confidence 532 34543332 223 68889999875 788888887 99999999999999999999999985
Q ss_pred --ccchhhHHHHHhhhceeeeec-CCcchHHHHHHHHHHHh
Q 012587 375 --ADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 375 --~DQ~~na~~~~e~~G~g~~~~-~~~~~~~l~~~i~~~l~ 412 (460)
.||-.-|.|+ +++|+.-++. +++++..|++++...++
T Consensus 325 p~eEQliRA~Rl-~~LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 325 PREEQLIRAQRL-EELGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred CcHHHHHHHHHH-HhcCcceeeCcccCChHHHHHHHHhccc
Confidence 3999999999 5899998887 89999999999999987
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.70 E-value=3.8e-15 Score=146.16 Aligned_cols=140 Identities=16% Similarity=0.269 Sum_probs=98.9
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHhhC-CCcEEEEEccCCCCCCCCCCCCchHHHH---HhcCCceeeeecCh-Hh
Q 012587 265 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGENQIPEELLE---ATKERGCIAGWVPQ-EE 339 (460)
Q Consensus 265 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~n~~~~~~vp~-~~ 339 (460)
+++++|++..|+.... ..+..+++++.+. +.++++..+.+ ..+.+.+.+ ..++|+.+.+|+++ .+
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~--------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~ 269 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN--------EALKQSLEDLQETNPDALKVFGYVENIDE 269 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC--------HHHHHHHHHHHhcCCCcEEEEechhhHHH
Confidence 3567888877887532 2245566666543 45666665421 011122221 22358888999986 58
Q ss_pred hhcccccccccccCChhHHHHHHHhCCceecc-cccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHH
Q 012587 340 VLAHSAVGGFLTHCGWNSTLESIVAGMPMICW-PSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEF 418 (460)
Q Consensus 340 il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~ 418 (460)
++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. .+.++|.+++.++++| ++.
T Consensus 270 l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~---~~~~~l~~~i~~ll~~--~~~ 341 (380)
T PRK13609 270 LFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI---RDDEEVFAKTEALLQD--DMK 341 (380)
T ss_pred HHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE---CCHHHHHHHHHHHHCC--HHH
Confidence 9999997 99999988999999999999885 6666778899888 467988866 4779999999999987 665
Q ss_pred HHHH
Q 012587 419 MESA 422 (460)
Q Consensus 419 ~~~a 422 (460)
+++.
T Consensus 342 ~~~m 345 (380)
T PRK13609 342 LLQM 345 (380)
T ss_pred HHHH
Confidence 4443
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=3.1e-15 Score=139.35 Aligned_cols=255 Identities=19% Similarity=0.226 Sum_probs=148.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCccch---hHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHH
Q 012587 16 AVGHVNSMLNLAELLGHAGIKITFLNTEHYY---DRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDS 92 (460)
Q Consensus 16 ~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
+.||+.++++||++|+++||+|+|++..... +.+.+ .++.+..+++...
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~------------~g~~v~~~~~~~~---------------- 64 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS------------AGFPVYELPDESS---------------- 64 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH------------cCCeEEEecCCCc----------------
Confidence 7899999999999999999999999975432 22222 2366666653210
Q ss_pred HHhhCcHHHHHHHHcCCCCccEEEEcCCcchH--HHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCCCccCC
Q 012587 93 LNCATPPLLKEMVSDSKSPVNCIITDGYMSRA--IDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGFLRCR 170 (460)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (460)
+..-...+.+++++. +||+||.|.+.... ....+..+.+++.+.-.....
T Consensus 65 -~~~d~~~~~~~l~~~--~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~------------------------- 116 (279)
T TIGR03590 65 -RYDDALELINLLEEE--KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRP------------------------- 116 (279)
T ss_pred -hhhhHHHHHHHHHhc--CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCC-------------------------
Confidence 011223456666665 99999999875522 222334456666543321000
Q ss_pred CCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC-CceeEeCccccccccCCCccccCCCC
Q 012587 171 DLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSS 249 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~ 249 (460)
..++ +++|..+..+ ...+... .+ ...+..|+-...... +
T Consensus 117 --------------------------~~~D-~vin~~~~~~--~~~y~~~-~~~~~~~l~G~~Y~~lr~----------e 156 (279)
T TIGR03590 117 --------------------------HDCD-LLLDQNLGAD--ASDYQGL-VPANCRLLLGPSYALLRE----------E 156 (279)
T ss_pred --------------------------cCCC-EEEeCCCCcC--HhHhccc-CcCCCeEEecchHHhhhH----------H
Confidence 1122 2223222111 1111000 01 135667762221110 1
Q ss_pred ccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC--CCcEEEEEccCCCCCCCCCCCCchHHHH--Hh
Q 012587 250 LWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLE--AT 325 (460)
Q Consensus 250 ~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~ 325 (460)
|+... .........+.|+|++|.... .+....++++++.. +.++.++++.. . ...+.+.+ ..
T Consensus 157 F~~~~----~~~~~~~~~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~------~--~~~~~l~~~~~~ 222 (279)
T TIGR03590 157 FYQLA----TANKRRKPLRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSS------N--PNLDELKKFAKE 222 (279)
T ss_pred HHHhh----HhhhcccccCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCC------C--cCHHHHHHHHHh
Confidence 11000 000011124678999996643 23455666777654 45677777532 1 12222322 12
Q ss_pred cCCceeeeecCh-HhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHH
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRF 383 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 383 (460)
..|+.+..++++ ..+|+.+++ +|++|| +|++|++++|+|+|++|...+|..||+.
T Consensus 223 ~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 223 YPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 458888899997 699999998 999999 9999999999999999999999999875
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=4.7e-14 Score=138.52 Aligned_cols=323 Identities=14% Similarity=0.069 Sum_probs=167.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
||||+|+..++.||++|.+ ++++|+++++++.+++.... .+.+... ...+.++.++- ..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~l~~----------~g 59 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC--------ESLFDMEELAV----------MG 59 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC--------ccccCHHHhhh----------cc
Confidence 4699999999999999999 99999999888888874331 2332211 00122222211 11
Q ss_pred hHHHHHH---HHhhCcHHHHHHHHcCCCCccEEEEcCC-cchH--HHHHHHhCCceEEEecchhHHHHHHhhccccccCC
Q 012587 86 FPELVDS---LNCATPPLLKEMVSDSKSPVNCIITDGY-MSRA--IDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (460)
Q Consensus 86 ~~~~~~~---~~~~~~~~l~~~~~~~~~~pD~vv~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
+...+.. +.. ....+..+++++ +||+|+.-.. ..+. ...|...|||++.+.....+ .
T Consensus 60 ~~~~~~~~~~~~~-~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~---------~----- 122 (380)
T PRK00025 60 LVEVLPRLPRLLK-IRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW---------A----- 122 (380)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh---------h-----
Confidence 1122222 221 345567788887 9999876332 2233 33467889998875321100 0
Q ss_pred CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccC
Q 012587 160 ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVR 239 (460)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~ 239 (460)
+ .......+. ..++.++..+... .. .... ..-++.++|-........
T Consensus 123 ---------------~------~~~~~~~~~------~~~d~i~~~~~~~--~~---~~~~-~g~~~~~~G~p~~~~~~~ 169 (380)
T PRK00025 123 ---------------W------RQGRAFKIA------KATDHVLALFPFE--AA---FYDK-LGVPVTFVGHPLADAIPL 169 (380)
T ss_pred ---------------c------CchHHHHHH------HHHhhheeCCccC--HH---HHHh-cCCCeEEECcCHHHhccc
Confidence 0 000111111 2233334333211 11 1122 212367777433221100
Q ss_pred CCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC-----CCcEEEEEccCCCCCCCCC
Q 012587 240 IPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWVIRPDLISGKDGE 314 (460)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~ 314 (460)
. .........+....++++|++..||...........++++++.+ +.+++++.+.+
T Consensus 170 ~-----------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~-------- 230 (380)
T PRK00025 170 L-----------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP-------- 230 (380)
T ss_pred c-----------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh--------
Confidence 0 01111222222223457777777776532222344444544432 34566654211
Q ss_pred CCCchHHHHHh----cCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccccc--------cchhh--
Q 012587 315 NQIPEELLEAT----KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFA--------DQQIN-- 380 (460)
Q Consensus 315 ~~~~~~~~~~~----~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--------DQ~~n-- 380 (460)
...+.+.+.. .-++.+.. -.-..+++.+++ +|+-+|.+++ ||+++|+|+|++|... .|..|
T Consensus 231 -~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~ 305 (380)
T PRK00025 231 -KRREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPY 305 (380)
T ss_pred -hhHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCe
Confidence 1112222211 11333322 124778899998 9999998888 9999999999995421 22222
Q ss_pred ---HHHHHhhhceeeeec-CCcchHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012587 381 ---SRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMA 426 (460)
Q Consensus 381 ---a~~~~e~~G~g~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~ 426 (460)
+..+. ..+++..+. ...+++.|.+.+.++++| ++.+++..+-.
T Consensus 306 ~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~ 352 (380)
T PRK00025 306 VSLPNLLA-GRELVPELLQEEATPEKLARALLPLLAD--GARRQALLEGF 352 (380)
T ss_pred eehHHHhc-CCCcchhhcCCCCCHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 23332 333344444 678999999999999998 76665444433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.62 E-value=2.9e-14 Score=139.99 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=107.5
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHH-hh-CCCcEEEEEccCCCCCCCCCCCCchHHHHH--hcCCceeeeecCh-Hh
Q 012587 265 PKQSVIYVSFGSIAVMSRDQLIEFYYGL-VH-SKKSFLWVIRPDLISGKDGENQIPEELLEA--TKERGCIAGWVPQ-EE 339 (460)
Q Consensus 265 ~~~~~V~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~n~~~~~~vp~-~~ 339 (460)
+++++|++..|+.... ..+..+++++ +. .+.+++++.+.+ ..+-+.+.+. ..+++.+.+|+.+ .+
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~--------~~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKS--------KELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCC--------HHHHHHHHHHhccCCCeEEEeccchHHH
Confidence 3578888988988631 2344444443 32 245666665421 0111222221 2357888899975 67
Q ss_pred hhcccccccccccCChhHHHHHHHhCCceecc-cccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHH
Q 012587 340 VLAHSAVGGFLTHCGWNSTLESIVAGMPMICW-PSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEF 418 (460)
Q Consensus 340 il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~ 418 (460)
+++.+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+ ++.|+|+... +.+++.++|.++++| ++.
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~---~~~~l~~~i~~ll~~--~~~ 341 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD---TPEEAIKIVASLTNG--NEQ 341 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC---CHHHHHHHHHHHhcC--HHH
Confidence 8999998 99988888999999999999998 6666677899999 5789998773 788999999999987 543
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012587 419 MESADRMANLAKKSVNKGGSSYCNLDRLVNDI 450 (460)
Q Consensus 419 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 450 (460)
.++|++..++. .+..+....++.+.+.+
T Consensus 342 ---~~~m~~~~~~~-~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 342 ---LTNMISTMEQD-KIKYATQTICRDLLDLI 369 (391)
T ss_pred ---HHHHHHHHHHh-cCCCCHHHHHHHHHHHh
Confidence 34455555543 11233334444444443
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.54 E-value=1.9e-12 Score=126.90 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=98.5
Q ss_pred CCCcEEEEEecCcccCCHH-HHHHHHHHHh-----hCCCcEEEEEccCCCCCCCCCCCCchHHHHH-hcCCceeeeecCh
Q 012587 265 PKQSVIYVSFGSIAVMSRD-QLIEFYYGLV-----HSKKSFLWVIRPDLISGKDGENQIPEELLEA-TKERGCIAGWVPQ 337 (460)
Q Consensus 265 ~~~~~V~vs~GS~~~~~~~-~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~vp~ 337 (460)
+++++|++..|+....... .++.+...+. ..+.++++.++.+ ..+-..+.+. ...++.+.+|+++
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~--------~~~~~~L~~~~~~~~v~~~G~~~~ 275 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN--------KKLQSKLESRDWKIPVKVRGFVTN 275 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC--------HHHHHHHHhhcccCCeEEEecccc
Confidence 4677887777766543332 2333332221 1234566666422 0111222211 1346778899985
Q ss_pred -HhhhcccccccccccCChhHHHHHHHhCCceecccccccch-hhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhH
Q 012587 338 -EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQ-INSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERK 415 (460)
Q Consensus 338 -~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~-~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~ 415 (460)
.+++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|+.+ -+++.|.+++.+++++
T Consensus 276 ~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~---~~~~~la~~i~~ll~~-- 347 (382)
T PLN02605 276 MEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS---ESPKEIARIVAEWFGD-- 347 (382)
T ss_pred HHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec---CCHHHHHHHHHHHHcC--
Confidence 888999998 999999999999999999999998766675 6888885 67999866 5889999999999974
Q ss_pred HHHHHHHHHHHHHHHH
Q 012587 416 EEFMESADRMANLAKK 431 (460)
Q Consensus 416 ~~~~~~a~~l~~~~~~ 431 (460)
. .+..++|++..++
T Consensus 348 ~--~~~~~~m~~~~~~ 361 (382)
T PLN02605 348 K--SDELEAMSENALK 361 (382)
T ss_pred C--HHHHHHHHHHHHH
Confidence 1 2334445555554
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.50 E-value=1.3e-15 Score=131.21 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=93.5
Q ss_pred EEEEEecCcccCCHH-HHHHHHHHHhh--CCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecC-hHhhhccc
Q 012587 269 VIYVSFGSIAVMSRD-QLIEFYYGLVH--SKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVP-QEEVLAHS 344 (460)
Q Consensus 269 ~V~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp-~~~il~~~ 344 (460)
+|+|+.||.....-. .+..+...+.. ...++++.++..... .....+ ...+.|+.+.+|++ ..++++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~------~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE------ELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH------HHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH------HHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 489999988632111 12223333332 246788887533100 000100 01125788999999 79999999
Q ss_pred ccccccccCChhHHHHHHHhCCceecccccc----cchhhHHHHHhhhceeeeec-CCcchHHHHHHHHHHHhH
Q 012587 345 AVGGFLTHCGWNSTLESIVAGMPMICWPSFA----DQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 345 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~----DQ~~na~~~~e~~G~g~~~~-~~~~~~~l~~~i~~~l~~ 413 (460)
++ +|||||.||++|++++|+|+|++|... +|..||..++ +.|+|..+. ...+.+.|.+.|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCcccCCHHHHHHHHHHHHcC
Confidence 98 999999999999999999999999987 9999999995 789999998 677799999999999986
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.42 E-value=1e-13 Score=115.49 Aligned_cols=124 Identities=22% Similarity=0.289 Sum_probs=80.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCC--CCCC--CCCCCC
Q 012587 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDG--LPRD--HPRTPD 84 (460)
Q Consensus 9 il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~ 84 (460)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+.+ . +++|.+++.. ++.. ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-~-----------Gl~~~~~~~~~~~~~~~~~~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-A-----------GLEFVPIPGDSRLPRSLEPLANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-T-----------T-EEEESSSCGGGGHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-c-----------CceEEEecCCcCcCcccchhhhhh
Confidence 7899999999999999999999999999999999887777744 3 4899988754 0000 000000
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcC------CCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHH
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDS------KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACA 145 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~------~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 145 (460)
........+ ....+.+.+...+. ...+|+++.+.....+..+||.+|||++.....+.+.
T Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 69 RLARLIRGL-EEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hHHHHhhhh-hHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 011111111 11222223333222 1367888888877789999999999999988876543
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.41 E-value=1.1e-10 Score=114.33 Aligned_cols=328 Identities=15% Similarity=0.076 Sum_probs=175.4
Q ss_pred CCCCHHHHHHHHHHHHh--CCCeEE---EEeCccchh-HHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHH
Q 012587 16 AVGHVNSMLNLAELLGH--AGIKIT---FLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPEL 89 (460)
Q Consensus 16 ~~Gh~~p~l~La~~L~~--rGH~Vt---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
++|-=.--++|+++|++ .|++|. +++...-++ ...+.. + .+..+| .+-.. ...+...
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~-----------g-~~~~~~----sgg~~-~~~~~~~ 68 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPII-----------G-PTKELP----SGGFS-YQSLRGL 68 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCcee-----------C-CCCCCC----CCCcc-CCCHHHH
Confidence 34555567889999998 699999 999855433 111110 1 222232 22111 1222333
Q ss_pred HHHHHh----hCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCC
Q 012587 90 VDSLNC----ATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKG 165 (460)
Q Consensus 90 ~~~~~~----~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (460)
+..... ....+ ..+++++..+||+|+.-.-+. ...+|...|+|++.+.+.=.- +++.. ..+..+...
T Consensus 69 ~~~~~~gl~~~~~~~-~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn------~~~~~-~~~~~~~~~ 139 (396)
T TIGR03492 69 LRDLRAGLVGLTLGQ-WRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSD------YYWES-GPRRSPSDE 139 (396)
T ss_pred HHHHHhhHHHHHHHH-HHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccc------eeecC-CCCCccchh
Confidence 333222 12222 334444324899999776555 888899999999995553111 11100 000000000
Q ss_pred CccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCCCcccc
Q 012587 166 FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTY 245 (460)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 245 (460)
|.++.. .....+ + ..+ -....++.++...-. ..++.+. ..-++.++|-...+.-..
T Consensus 140 ~~~~~G--------~~~~p~-e-~n~--l~~~~a~~v~~~~~~-----t~~~l~~-~g~k~~~vGnPv~d~l~~------ 195 (396)
T TIGR03492 140 YHRLEG--------SLYLPW-E-RWL--MRSRRCLAVFVRDRL-----TARDLRR-QGVRASYLGNPMMDGLEP------ 195 (396)
T ss_pred hhccCC--------CccCHH-H-HHH--hhchhhCEEeCCCHH-----HHHHHHH-CCCeEEEeCcCHHhcCcc------
Confidence 011100 001111 1 011 111444554444421 2222233 334799999554332210
Q ss_pred CCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC----CCcEEEEEccCCCCCCCCCCCCchHH
Q 012587 246 SSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS----KKSFLWVIRPDLISGKDGENQIPEEL 321 (460)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~ 321 (460)
.... . + .+++++|.+-.||....-.+.+..+.++++.+ +..+++.+.++. .. +.+
T Consensus 196 -------~~~~--~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~--------~~-~~~ 254 (396)
T TIGR03492 196 -------PERK--P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL--------SL-EKL 254 (396)
T ss_pred -------cccc--c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC--------CH-HHH
Confidence 0000 1 2 22567898999998644444455566666554 566777763221 01 111
Q ss_pred HHHhc-------------------CCceeeeec-ChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhH
Q 012587 322 LEATK-------------------ERGCIAGWV-PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINS 381 (460)
Q Consensus 322 ~~~~~-------------------~n~~~~~~v-p~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na 381 (460)
.+... +++.+..+. ...++++.+++ +|+-+|..| .|+..+|+|+|++|....|. |+
T Consensus 255 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na 330 (396)
T TIGR03492 255 QAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TY 330 (396)
T ss_pred HHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HH
Confidence 11111 124454554 34788999998 999999766 99999999999999766676 98
Q ss_pred HHHHhhh----ceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHH
Q 012587 382 RFVGEVW----KLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESA 422 (460)
Q Consensus 382 ~~~~e~~----G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a 422 (460)
... ++. |.++.+ .+.+.+.|.+++.++++| ++..++.
T Consensus 331 ~~~-~~~~~l~g~~~~l-~~~~~~~l~~~l~~ll~d--~~~~~~~ 371 (396)
T TIGR03492 331 GFA-EAQSRLLGGSVFL-ASKNPEQAAQVVRQLLAD--PELLERC 371 (396)
T ss_pred HHH-HhhHhhcCCEEec-CCCCHHHHHHHHHHHHcC--HHHHHHH
Confidence 766 342 666666 345669999999999987 6554433
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=3.2e-09 Score=103.02 Aligned_cols=329 Identities=14% Similarity=0.133 Sum_probs=170.6
Q ss_pred EEEEEcC---CC-CCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 8 HVAILPL---PA-VGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 8 ~il~~~~---~~-~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
||++++. |. .|+...+..|+++|.++||+|++++........ .. .....+..+.. +...
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-~~----------~~~~~~~~~~~--~~~~---- 63 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESE-GP----------ARVVPVPSVPL--PGYP---- 63 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhcc-CC----------CCceeeccccc--Cccc----
Confidence 4555542 22 789999999999999999999999974421111 00 00011111110 0000
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCC
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGE 160 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.....+ .....+...+++. +||+|++..... .+..++...++|++......... .......
T Consensus 64 -~~~~~~-----~~~~~~~~~~~~~--~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~------- 127 (364)
T cd03814 64 -EIRLAL-----PPRRRVRRLLDAF--APDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPE-YLRYYGL------- 127 (364)
T ss_pred -ceEecc-----cchhhHHHHHHhc--CCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHH-Hhhhccc-------
Confidence 000000 0123345555665 999998764432 46777888999998765432111 0000000
Q ss_pred CCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccCC
Q 012587 161 LPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRI 240 (460)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~ 240 (460)
...........+.. ...++.+++.+....+ ........++..+..........
T Consensus 128 -------------------~~~~~~~~~~~~~~--~~~~d~i~~~s~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~- 180 (364)
T cd03814 128 -------------------GPLSWLAWAYLRWF--HNRADRVLVPSPSLAD-----ELRARGFRRVRLWPRGVDTELFH- 180 (364)
T ss_pred -------------------chHhHhhHHHHHHH--HHhCCEEEeCCHHHHH-----HHhccCCCceeecCCCccccccC-
Confidence 00001111122211 2557777777765433 11210223444433322111100
Q ss_pred CccccCCCCccccchhhhhhhhcCCCCcEEEEEecCccc-CCHHHHHHHHHHHhhC-CCcEEEEEccCCCCCCCCCCCCc
Q 012587 241 PEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAV-MSRDQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGENQIP 318 (460)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~ 318 (460)
+.. ........+- ..++.+++..|+... ...+.+..++..+... +..+++.-.+. ..
T Consensus 181 ~~~--------~~~~~~~~~~---~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~----------~~ 239 (364)
T cd03814 181 PRR--------RDEALRARLG---PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP----------AR 239 (364)
T ss_pred ccc--------ccHHHHHHhC---CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc----------hH
Confidence 000 0011111121 133556677787653 2334444444444332 34554443211 11
Q ss_pred hHHHHHhcCCceeeeecChHh---hhcccccccccccCC----hhHHHHHHHhCCceecccccccchhhHHHHHhhhcee
Q 012587 319 EELLEATKERGCIAGWVPQEE---VLAHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLG 391 (460)
Q Consensus 319 ~~~~~~~~~n~~~~~~vp~~~---il~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g 391 (460)
..+. ...+|+.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ +..+.|
T Consensus 240 ~~~~-~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g 311 (364)
T cd03814 240 ARLE-ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENG 311 (364)
T ss_pred HHHh-ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcce
Confidence 1111 2457899999999654 7888887 776554 478999999999999887543 45556 456888
Q ss_pred eeecCCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 012587 392 LDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANL 428 (460)
Q Consensus 392 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~ 428 (460)
... ...+.+++.+++.++++| ++.+++..+-+..
T Consensus 312 ~~~-~~~~~~~l~~~i~~l~~~--~~~~~~~~~~~~~ 345 (364)
T cd03814 312 LLV-EPGDAEAFAAALAALLAD--PELRRRMAARARA 345 (364)
T ss_pred EEc-CCCCHHHHHHHHHHHHcC--HHHHHHHHHHHHH
Confidence 877 556788899999999997 6655544443333
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=8.5e-11 Score=103.83 Aligned_cols=294 Identities=15% Similarity=0.168 Sum_probs=182.9
Q ss_pred cEEEEEcCC----CCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 7 VHVAILPLP----AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 7 ~~il~~~~~----~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
|||+|.+-+ +.||+.+++.||++|.++|-.++|++.+...+.+-+. +.++.+. ..
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~----------~~~f~~~-------~~---- 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKV----------YEGFKVL-------EG---- 59 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhh----------hhhccce-------ee----
Confidence 689998875 6899999999999999999999999986644433221 1111111 00
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCC
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
.. ...+++- ++|++|.|.+.. -...+.++.|.+.+.+..-.........
T Consensus 60 ----------------~~-~n~ik~~--k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d--------- 111 (318)
T COG3980 60 ----------------RG-NNLIKEE--KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDND--------- 111 (318)
T ss_pred ----------------ec-ccccccc--cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhH---------
Confidence 00 1144554 999999999887 3577888999999998664322211000
Q ss_pred CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccC
Q 012587 160 ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVR 239 (460)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~ 239 (460)
.......+ -+..+.+.+. ...++.||-......
T Consensus 112 ------------------------~ivN~~~~------------a~~~y~~v~~----------k~~~~lGp~y~~lr~- 144 (318)
T COG3980 112 ------------------------LIVNAILN------------ANDYYGLVPN----------KTRYYLGPGYAPLRP- 144 (318)
T ss_pred ------------------------hhhhhhhc------------chhhccccCc----------ceEEEecCCceeccH-
Confidence 00000000 0111111000 113666765543221
Q ss_pred CCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCch
Q 012587 240 IPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPE 319 (460)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 319 (460)
.|....+ +-+. + ++.-|+|++|..- ..+..-+++..+.+.++.+-+++++. .....
T Consensus 145 ---------eF~~~r~---~~~~-r-~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~ 200 (318)
T COG3980 145 ---------EFYALRE---ENTE-R-PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--------NPTLK 200 (318)
T ss_pred ---------HHHHhHH---HHhh-c-chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--------Ccchh
Confidence 1111111 1122 1 3455999999652 34566778888888887776666421 12233
Q ss_pred HHHHH--hcCCceeeeecC-hHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecC
Q 012587 320 ELLEA--TKERGCIAGWVP-QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 396 (460)
Q Consensus 320 ~~~~~--~~~n~~~~~~vp-~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~ 396 (460)
+++.+ ..+|+.+..... ...++..|++ .|+-||. |+.|++..|+|.+++|....|---|... +.+|+-..+.-
T Consensus 201 ~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~ 276 (318)
T COG3980 201 NLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY 276 (318)
T ss_pred HHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC
Confidence 33322 345777765555 5778899997 8888775 8999999999999999999999999999 57788777752
Q ss_pred CcchHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012587 397 LCDRNIVEKAVNDLMVERKEEFMESADRMA 426 (460)
Q Consensus 397 ~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~ 426 (460)
.++.......+.++..| ...|.+...-.
T Consensus 277 ~l~~~~~~~~~~~i~~d--~~~rk~l~~~~ 304 (318)
T COG3980 277 HLKDLAKDYEILQIQKD--YARRKNLSFGS 304 (318)
T ss_pred CCchHHHHHHHHHhhhC--HHHhhhhhhcc
Confidence 46777777778888877 66666654433
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.35 E-value=7.1e-09 Score=104.50 Aligned_cols=328 Identities=16% Similarity=0.127 Sum_probs=165.0
Q ss_pred CCCcEEEEEcCCC-----CCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCC
Q 012587 4 QDHVHVAILPLPA-----VGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRD 78 (460)
Q Consensus 4 ~~~~~il~~~~~~-----~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (460)
.++|||+++..++ .|=-..+..+++.|.++||+|++++...... .+ ..++.+..... ++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~--~~-----------~~g~~v~~~~~-~~~~ 121 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP--QE-----------FHGAKVIGSWS-FPCP 121 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC--cc-----------ccCceeeccCC-cCCc
Confidence 4568999886543 3545678999999999999999999744221 01 11233322111 0000
Q ss_pred CCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchhHHHHHHhhcccc
Q 012587 79 HPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (460)
. ..... ..+ .....+..++++. +||+|.+..... .+..+|..+|+|+|......... ..+..
T Consensus 122 ~---~~~~~---~~~--~~~~~l~~~i~~~--kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~-----~~~~~ 186 (465)
T PLN02871 122 F---YQKVP---LSL--ALSPRIISEVARF--KPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPV-----YIPRY 186 (465)
T ss_pred c---CCCce---eec--cCCHHHHHHHHhC--CCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchh-----hhhcc
Confidence 0 00000 000 1222455667776 999997654322 35567889999998754321100 00000
Q ss_pred ccCCCCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcC---CCceeEeCcc
Q 012587 156 IDAGELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS---CPNIYSIGPL 232 (460)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~---~~~~~~vG~~ 232 (460)
.... ....+. .+.+. ....++.+++.+...-+. +.... ..++..+..-
T Consensus 187 ---------------~~~~------~~~~~~-~~~r~--~~~~ad~ii~~S~~~~~~-----l~~~~~~~~~kv~vi~nG 237 (465)
T PLN02871 187 ---------------TFSW------LVKPMW-DIIRF--LHRAADLTLVTSPALGKE-----LEAAGVTAANRIRVWNKG 237 (465)
T ss_pred ---------------cchh------hHHHHH-HHHHH--HHhhCCEEEECCHHHHHH-----HHHcCCCCcCeEEEeCCc
Confidence 0000 000010 11111 125577777777532211 12101 1223322211
Q ss_pred ccccccCCCccccCCCCccccchhhh-hhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC-CCcEEEEEccCCCCC
Q 012587 233 NAHLKVRIPEKTYSSSSLWKIDRSCM-AWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-KKSFLWVIRPDLISG 310 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~ 310 (460)
....... |. ....+.. .+....++ ..+++..|++.. ...+..++++++.. +.+++++- .
T Consensus 238 vd~~~f~-p~---------~~~~~~~~~~~~~~~~-~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG-~----- 298 (465)
T PLN02871 238 VDSESFH-PR---------FRSEEMRARLSGGEPE-KPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVG-D----- 298 (465)
T ss_pred cCccccC-Cc---------cccHHHHHHhcCCCCC-CeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEe-C-----
Confidence 1110000 00 0011111 12111123 344566687753 23355566777765 45555443 2
Q ss_pred CCCCCCCchHHHHH-hcCCceeeeecChH---hhhcccccccccccC---C-hhHHHHHHHhCCceecccccccchhhHH
Q 012587 311 KDGENQIPEELLEA-TKERGCIAGWVPQE---EVLAHSAVGGFLTHC---G-WNSTLESIVAGMPMICWPSFADQQINSR 382 (460)
Q Consensus 311 ~~~~~~~~~~~~~~-~~~n~~~~~~vp~~---~il~~~~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~ 382 (460)
| ...+.+.+. ...|+.+.+++++. .++..+++ +|.-. | ..++.||+++|+|+|+....+ ...
T Consensus 299 -G---~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~e 368 (465)
T PLN02871 299 -G---PYREELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPD 368 (465)
T ss_pred -C---hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHh
Confidence 1 111222221 13478888999854 47788887 66432 2 357899999999999876432 233
Q ss_pred HHHhh---hceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHH
Q 012587 383 FVGEV---WKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESA 422 (460)
Q Consensus 383 ~~~e~---~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a 422 (460)
.+ +. -+.|..+ ..-+.+++.++|.++++| ++.+++.
T Consensus 369 iv-~~~~~~~~G~lv-~~~d~~~la~~i~~ll~~--~~~~~~~ 407 (465)
T PLN02871 369 II-PPDQEGKTGFLY-TPGDVDDCVEKLETLLAD--PELRERM 407 (465)
T ss_pred hh-hcCCCCCceEEe-CCCCHHHHHHHHHHHHhC--HHHHHHH
Confidence 34 33 4677777 445789999999999987 5544433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.27 E-value=1.3e-08 Score=98.47 Aligned_cols=139 Identities=20% Similarity=0.164 Sum_probs=83.0
Q ss_pred CCcEEEEEecCcccC-CHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHh---hh
Q 012587 266 KQSVIYVSFGSIAVM-SRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEE---VL 341 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~---il 341 (460)
..+.+++..|+.... ..+.+..++..+...+.++++.-... . ...........+++.+.+++++.+ ++
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~-------~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 260 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGL-------E-LEEESYELEGDPRVEFLGAYPQEEIDDFY 260 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCch-------h-hhHHHHhhcCCCeEEEeCCCCHHHHHHHH
Confidence 446667778876532 23333333333333345555543211 0 000000001346888889997644 58
Q ss_pred cccccccccc----cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHH
Q 012587 342 AHSAVGGFLT----HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKE 416 (460)
Q Consensus 342 ~~~~~~~~I~----HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~ 416 (460)
..+++ +|+ ..|. .++.||+++|+|+|+.+. ..+...+ +..+.|..+ ..-+.+++.+++.++++| +
T Consensus 261 ~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~-~~~d~~~l~~~i~~l~~~--~ 330 (359)
T cd03823 261 AEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLF-PPGDAEDLAAALERLIDD--P 330 (359)
T ss_pred HhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEE-CCCCHHHHHHHHHHHHhC--h
Confidence 88887 552 2344 589999999999998754 3455566 454567777 445689999999999987 5
Q ss_pred HHHHHH
Q 012587 417 EFMESA 422 (460)
Q Consensus 417 ~~~~~a 422 (460)
..++..
T Consensus 331 ~~~~~~ 336 (359)
T cd03823 331 DLLERL 336 (359)
T ss_pred HHHHHH
Confidence 544443
No 49
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.25 E-value=2.8e-08 Score=98.71 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=57.0
Q ss_pred CCceeeeecChH---hhhcccccccccccCCh------hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCC
Q 012587 327 ERGCIAGWVPQE---EVLAHSAVGGFLTHCGW------NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 397 (460)
Q Consensus 327 ~n~~~~~~vp~~---~il~~~~~~~~I~HGG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~ 397 (460)
+|+.+.+|+|+. .++..+++-++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|..+ ..
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~-~~ 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCV-EP 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEe-CC
Confidence 478888999864 46788887444444332 347899999999999864331 112233 3 678777 44
Q ss_pred cchHHHHHHHHHHHhH
Q 012587 398 CDRNIVEKAVNDLMVE 413 (460)
Q Consensus 398 ~~~~~l~~~i~~~l~~ 413 (460)
-+.++|.++|.++++|
T Consensus 358 ~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 358 ESVEALVAAIAALARQ 373 (412)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 6789999999999986
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.20 E-value=2.2e-08 Score=97.78 Aligned_cols=345 Identities=18% Similarity=0.075 Sum_probs=168.9
Q ss_pred EEEEEcCCC----CCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 8 HVAILPLPA----VGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 8 ~il~~~~~~----~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
||++++... .|+-.....++++|+++||+|++++.................. ..++.+..++......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----- 72 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREE---VDGVRVHRVPLPPYKK----- 72 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEe---cCCeEEEEEecCCCCc-----
Confidence 577776643 4899999999999999999999999744322221100000000 2345555554321111
Q ss_pred CChHHHHHHHHhhCcHHHHHHH-HcCCCCccEEEEcCCcc----hHHHHHHHhCCceEEEecchhHHHHHHhhccccccC
Q 012587 84 DKFPELVDSLNCATPPLLKEMV-SDSKSPVNCIITDGYMS----RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA 158 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~pD~vv~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
......+.............+. +. .+||+|+...... .+..++...++|++............... .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~--~---- 144 (394)
T cd03794 73 NGLLKRLLNYLSFALSALLALLKRR--RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALG--L---- 144 (394)
T ss_pred cchHHHHHhhhHHHHHHHHHHHhcc--cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHcc--C----
Confidence 1111111111111112222232 23 4999999886222 34555666799998865432110000000 0
Q ss_pred CCCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHh-hcCC-CceeEeCcccccc
Q 012587 159 GELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIR-NHSC-PNIYSIGPLNAHL 236 (460)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~-~~~~-~~~~~vG~~~~~~ 236 (460)
...............+. ....++.++..+....+. .. .... .++..+.......
T Consensus 145 -----------------~~~~~~~~~~~~~~~~~--~~~~~d~vi~~s~~~~~~-----~~~~~~~~~~~~~i~~~~~~~ 200 (394)
T cd03794 145 -----------------LKNGSLLYRLLRKLERL--IYRRADAIVVISPGMREY-----LVRRGVPPEKISVIPNGVDLE 200 (394)
T ss_pred -----------------ccccchHHHHHHHHHHH--HHhcCCEEEEECHHHHHH-----HHhcCCCcCceEEcCCCCCHH
Confidence 00000000111222211 235667777777543221 11 1011 3444444333221
Q ss_pred ccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCccc-CCHHHHHHHHHHHhhC-CCcEEEEEccCCCCCCCCC
Q 012587 237 KVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAV-MSRDQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGE 314 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~ 314 (460)
..... .......... ...++.+++..|+... ...+.+...+..+.+. +.++++. +.+ .
T Consensus 201 ~~~~~----------~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~------~- 260 (394)
T cd03794 201 LFKPP----------PADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDG------P- 260 (394)
T ss_pred HcCCc----------cchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCc------c-
Confidence 11000 0000011111 2245667788888753 2334444444444433 4454443 211 1
Q ss_pred CCCchHHH----HHhcCCceeeeecChH---hhhcccccccccccCC---------hhHHHHHHHhCCceecccccccch
Q 012587 315 NQIPEELL----EATKERGCIAGWVPQE---EVLAHSAVGGFLTHCG---------WNSTLESIVAGMPMICWPSFADQQ 378 (460)
Q Consensus 315 ~~~~~~~~----~~~~~n~~~~~~vp~~---~il~~~~~~~~I~HGG---------~gs~~eal~~GvP~l~~P~~~DQ~ 378 (460)
..+.+. ....+|+.+.+++++. .++..+++ +|.... -+++.||+++|+|+|+.+..+.+.
T Consensus 261 --~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~ 336 (394)
T cd03794 261 --EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE 336 (394)
T ss_pred --cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh
Confidence 112221 1234688888999865 46778887 553221 345899999999999988654433
Q ss_pred hhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHH
Q 012587 379 INSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADR 424 (460)
Q Consensus 379 ~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~ 424 (460)
.+ ...+.|..+ ...+.+++.+++.++++| +..+++..+
T Consensus 337 ----~~-~~~~~g~~~-~~~~~~~l~~~i~~~~~~--~~~~~~~~~ 374 (394)
T cd03794 337 ----LV-EEAGAGLVV-PPGDPEALAAAILELLDD--PEERAEMGE 374 (394)
T ss_pred ----hh-ccCCcceEe-CCCCHHHHHHHHHHHHhC--hHHHHHHHH
Confidence 33 233667766 334889999999999986 555544433
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.18 E-value=4.6e-08 Score=94.27 Aligned_cols=319 Identities=16% Similarity=0.083 Sum_probs=164.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChH
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
||++++....|+......++++|.++||+|++++.......... ..++.+..++.... .....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~------~~~~~ 63 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE-----------ALGVKVIPIPLDRR------GINPF 63 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc-----------cCCceEEecccccc------ccChH
Confidence 68888888888999999999999999999999997544332111 22456555543210 01111
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc--hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCC
Q 012587 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKG 165 (460)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (460)
..+... ..+...++.. +||+|++..... .+..++...+.|.+........... . .
T Consensus 64 ~~~~~~-----~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~--~----------- 120 (359)
T cd03808 64 KDLKAL-----LRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF---T--S----------- 120 (359)
T ss_pred hHHHHH-----HHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh---c--c-----------
Confidence 111111 2345566665 999998875433 3444455456665554332111000 0 0
Q ss_pred CccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC---CceeEeCccccccccCCCc
Q 012587 166 FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC---PNIYSIGPLNAHLKVRIPE 242 (460)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~---~~~~~vG~~~~~~~~~~~~ 242 (460)
. ...........+.. ....+.+++.+....+. ...... ...+.+.+........
T Consensus 121 --------~-----~~~~~~~~~~~~~~--~~~~d~ii~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--- 177 (359)
T cd03808 121 --------G-----GLKRRLYLLLERLA--LRFTDKVIFQNEDDRDL-----ALKLGIIKKKKTVLIPGSGVDLDRF--- 177 (359)
T ss_pred --------c-----hhHHHHHHHHHHHH--HhhccEEEEcCHHHHHH-----HHHhcCCCcCceEEecCCCCChhhc---
Confidence 0 00011111122111 24456777777543221 111011 1222222222111100
Q ss_pred cccCCCCccccchhhhhhhhc-CCCCcEEEEEecCccc-CCHHHHHHHHHHHhhC--CCcEEEEEccCCCCCCCCCCCCc
Q 012587 243 KTYSSSSLWKIDRSCMAWLDK-QPKQSVIYVSFGSIAV-MSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIP 318 (460)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~l~~-~~~~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~ 318 (460)
.. ... ..+++.+++..|+... ...+.+...+..+.+. +.++++.-... .....
T Consensus 178 ---------~~-------~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~-------~~~~~ 234 (359)
T cd03808 178 ---------SP-------SPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD-------EENPA 234 (359)
T ss_pred ---------Cc-------cccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC-------cchhh
Confidence 00 000 1245667788887653 2334444444444432 34444443211 10111
Q ss_pred hH--HHH-HhcCCceeeeecC-hHhhhcccccccccccC----ChhHHHHHHHhCCceecccccccchhhHHHHHhhhce
Q 012587 319 EE--LLE-ATKERGCIAGWVP-QEEVLAHSAVGGFLTHC----GWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKL 390 (460)
Q Consensus 319 ~~--~~~-~~~~n~~~~~~vp-~~~il~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~ 390 (460)
.. ..+ ...+++.+.++.. ...++..+++ +|.-. -.+++.||+++|+|+|+.+.. .+...+ +..+.
T Consensus 235 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~ 307 (359)
T cd03808 235 AILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVN 307 (359)
T ss_pred HHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcc
Confidence 10 111 1235677777654 4778888887 66433 257899999999999986543 334455 34467
Q ss_pred eeeecCCcchHHHHHHHHHHHhHhHHHHHHHH
Q 012587 391 GLDIKDLCDRNIVEKAVNDLMVERKEEFMESA 422 (460)
Q Consensus 391 g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a 422 (460)
|... ..-+.+++.+++.++++| ++..++.
T Consensus 308 g~~~-~~~~~~~~~~~i~~l~~~--~~~~~~~ 336 (359)
T cd03808 308 GFLV-PPGDAEALADAIERLIED--PELRARM 336 (359)
T ss_pred eEEE-CCCCHHHHHHHHHHHHhC--HHHHHHH
Confidence 7776 445789999999999887 5544443
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.16 E-value=8.6e-08 Score=93.66 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=60.0
Q ss_pred cCCceeeeecCh-Hhhhcccccccccc---c-CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLT---H-CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~---H-GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
.+++.+.++.++ ..++..+++ +|. . |...++.||+++|+|+|+... ...+..+ +.-..|... ...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~-~~~~~ 323 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLV-DVGDV 323 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEc-CCCCH
Confidence 357777787764 778888887 552 2 334599999999999998643 3455555 343567666 44578
Q ss_pred HHHHHHHHHHHhHhHHHHHH
Q 012587 401 NIVEKAVNDLMVERKEEFME 420 (460)
Q Consensus 401 ~~l~~~i~~~l~~~~~~~~~ 420 (460)
+++.+++.+++++ +..++
T Consensus 324 ~~l~~~i~~l~~~--~~~~~ 341 (371)
T cd04962 324 EAMAEYALSLLED--DELWQ 341 (371)
T ss_pred HHHHHHHHHHHhC--HHHHH
Confidence 9999999999986 55433
No 53
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.11 E-value=2.5e-08 Score=97.30 Aligned_cols=326 Identities=13% Similarity=0.078 Sum_probs=165.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
|||++ -.+++-|+.=+.+|.++|.++ +.++.++.+....+...+.... + ++.. .++ +..+. ...+
T Consensus 1 ~~i~~-~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-~-------~i~~-~~~--~~~~~--~~~~ 66 (365)
T TIGR00236 1 LKVSI-VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-F-------HLPP-DYD--LNIMS--PGQT 66 (365)
T ss_pred CeEEE-EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-c-------CCCC-Cee--eecCC--CCCC
Confidence 47775 457889999999999999987 5566666655555443332110 0 0110 000 00010 1122
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcC--Cc-chHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCC
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDG--YM-SRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELP 162 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (460)
....... ....+.+++++. +||+|++-. .. .++..+|..+|||++.+.-.. ..... +.+
T Consensus 67 ~~~~~~~----~~~~l~~~l~~~--~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-------~s~~~-----~~~ 128 (365)
T TIGR00236 67 LGEITSN----MLEGLEELLLEE--KPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-------RTGDR-----YSP 128 (365)
T ss_pred HHHHHHH----HHHHHHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-------CcCCC-----CCC
Confidence 2222222 225667788887 999998763 22 257889999999998653210 00000 000
Q ss_pred CCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhh-cCC-CceeEeCccccccccCC
Q 012587 163 IKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRN-HSC-PNIYSIGPLNAHLKVRI 240 (460)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~-~~~-~~~~~vG~~~~~~~~~~ 240 (460)
..+...+.... ..++.++..+-.. .+.+.. ... .+++.+|-.........
T Consensus 129 ------------------~~~~~~r~~~~-----~~ad~~~~~s~~~-----~~~l~~~G~~~~~I~vign~~~d~~~~~ 180 (365)
T TIGR00236 129 ------------------MPEEINRQLTG-----HIADLHFAPTEQA-----KDNLLRENVKADSIFVTGNTVIDALLTN 180 (365)
T ss_pred ------------------CccHHHHHHHH-----HHHHhccCCCHHH-----HHHHHHcCCCcccEEEeCChHHHHHHHH
Confidence 00111111111 1123333333211 111111 011 35777775432111000
Q ss_pred CccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC-----CCcEEEEEccCCCCCCCCCC
Q 012587 241 PEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWVIRPDLISGKDGEN 315 (460)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~ 315 (460)
... ....++.+.+. .++++|+++.+-..... ..+..++++++++ +.++++...++ .
T Consensus 181 ~~~--------~~~~~~~~~~~--~~~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~-------~- 241 (365)
T TIGR00236 181 VEI--------AYSSPVLSEFG--EDKRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLN-------P- 241 (365)
T ss_pred Hhh--------ccchhHHHhcC--CCCCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCC-------h-
Confidence 000 00111222222 13466766654322211 2356666666553 45555553211 0
Q ss_pred CCchHHHHH--hcCCceeeeecCh---HhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhce
Q 012587 316 QIPEELLEA--TKERGCIAGWVPQ---EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKL 390 (460)
Q Consensus 316 ~~~~~~~~~--~~~n~~~~~~vp~---~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~ 390 (460)
.....+.+. ..+|+.+.+.+++ ..++..+++ +|+-.|.. +.||+++|+|+|.++..+++++ .+ + .|.
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~-~-~g~ 313 (365)
T TIGR00236 242 VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV-E-AGT 313 (365)
T ss_pred HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH-h-cCc
Confidence 111112221 2357887776664 456677886 88877644 7999999999999976565552 22 2 476
Q ss_pred eeeecCCcchHHHHHHHHHHHhHhHHHHHHHHH
Q 012587 391 GLDIKDLCDRNIVEKAVNDLMVERKEEFMESAD 423 (460)
Q Consensus 391 g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~ 423 (460)
+..+. .++++|.+++.++++| +..+++..
T Consensus 314 ~~lv~--~d~~~i~~ai~~ll~~--~~~~~~~~ 342 (365)
T TIGR00236 314 NKLVG--TDKENITKAAKRLLTD--PDEYKKMS 342 (365)
T ss_pred eEEeC--CCHHHHHHHHHHHHhC--hHHHHHhh
Confidence 66552 5789999999999987 66665543
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.11 E-value=4.4e-07 Score=88.10 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=78.3
Q ss_pred CCcEEEEEecCcccC-CHHHHHHHHHHHhh--CCCcEEEEEccCCCCCCCCCCCCchHHHH-----HhcCCceeeeecCh
Q 012587 266 KQSVIYVSFGSIAVM-SRDQLIEFYYGLVH--SKKSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQ 337 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~n~~~~~~vp~ 337 (460)
+++.+++..|+.... ..+.+..++..+.. .+.++++.-.+ . ..+.+.+ ...+|+.+.+++|+
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~-------~---~~~~~~~~~~~~~~~~~v~~~g~~~~ 269 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG-------P---EREELEELARELGLADRVIFTGFVPR 269 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC-------c---hHHHHHHHHHHcCCCCcEEEeccCCh
Confidence 345566777876532 33444444444443 23454444321 1 1112221 12468888899987
Q ss_pred Hh---hhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHH
Q 012587 338 EE---VLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDL 410 (460)
Q Consensus 338 ~~---il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~ 410 (460)
.+ ++..+++ +|.- |...++.||+++|+|+|+... ...+..+ +..+.|..+.. .+. ++.+++.++
T Consensus 270 ~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~-~~~-~~~~~i~~l 340 (374)
T cd03817 270 EELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP-GDE-ALAEALLRL 340 (374)
T ss_pred HHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC-CCH-HHHHHHHHH
Confidence 54 6778887 5533 334789999999999998653 3345555 45567777742 222 899999999
Q ss_pred HhH
Q 012587 411 MVE 413 (460)
Q Consensus 411 l~~ 413 (460)
+++
T Consensus 341 ~~~ 343 (374)
T cd03817 341 LQD 343 (374)
T ss_pred HhC
Confidence 986
No 55
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.09 E-value=2.8e-07 Score=91.07 Aligned_cols=88 Identities=23% Similarity=0.215 Sum_probs=60.6
Q ss_pred cCCceeeeecChHh---hhcccccccccc-cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 326 KERGCIAGWVPQEE---VLAHSAVGGFLT-HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 326 ~~n~~~~~~vp~~~---il~~~~~~~~I~-HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
.+++.+.+++|+.+ ++..+++-++.+ +.|. .++.||+++|+|+|... .......+ +.-..|..+ ...+.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv-~~~d~ 353 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLV-DFFDP 353 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEc-CCCCH
Confidence 35788889999754 567888722222 2233 48999999999999864 33455555 343456666 44579
Q ss_pred HHHHHHHHHHHhHhHHHHHHH
Q 012587 401 NIVEKAVNDLMVERKEEFMES 421 (460)
Q Consensus 401 ~~l~~~i~~~l~~~~~~~~~~ 421 (460)
+++.++|.++++| ++.+++
T Consensus 354 ~~la~~i~~ll~~--~~~~~~ 372 (396)
T cd03818 354 DALAAAVIELLDD--PARRAR 372 (396)
T ss_pred HHHHHHHHHHHhC--HHHHHH
Confidence 9999999999997 554433
No 56
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.09 E-value=4.4e-07 Score=90.08 Aligned_cols=120 Identities=18% Similarity=0.069 Sum_probs=70.3
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
++.||.+++....|+-..+..+|++|+++||+|++++.......-... . ..++.++.++..- .. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~-~--------~~~v~~~~~~~~~--~~---~~ 67 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL-S--------NPNITIHPLPPPP--QR---LN 67 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh-c--------CCCEEEEECCCCc--cc---cc
Confidence 456899999988889899999999999999999999964321111100 0 3357777775311 00 11
Q ss_pred ChHHHHHH---HHhhCcHHHHHHHHcCCCCccEEEEcCCc-c----hHHHHHHHhCCceEEEec
Q 012587 85 KFPELVDS---LNCATPPLLKEMVSDSKSPVNCIITDGYM-S----RAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 85 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~pD~vv~D~~~-~----~~~~~A~~lgiP~v~~~~ 140 (460)
.....+.. ........+..+++. .+||+|++.... . .+..++...|+|+|....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 68 KLPFLLFAPLKVLWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 11222211 111122333334444 389999875322 1 245556678999887533
No 57
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.09 E-value=2.4e-07 Score=91.34 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=61.9
Q ss_pred cCCceeeeecChHh---hhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCc
Q 012587 326 KERGCIAGWVPQEE---VLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 398 (460)
Q Consensus 326 ~~n~~~~~~vp~~~---il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~ 398 (460)
.+|+.+.+|+|+.+ ++..+++ +++. |-..++.||+++|+|+|+.... .....+ +..+.|... ...
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~-~~~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLV-DPR 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEe-CCC
Confidence 36888899999755 4788887 6643 2236899999999999987643 344456 455678877 445
Q ss_pred chHHHHHHHHHHHhHhHHHHH
Q 012587 399 DRNIVEKAVNDLMVERKEEFM 419 (460)
Q Consensus 399 ~~~~l~~~i~~~l~~~~~~~~ 419 (460)
+.+++.++|.+++++ +..+
T Consensus 354 ~~~~l~~~i~~l~~~--~~~~ 372 (398)
T cd03800 354 DPEALAAALRRLLTD--PALR 372 (398)
T ss_pred CHHHHHHHHHHHHhC--HHHH
Confidence 799999999999986 5443
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.07 E-value=3.6e-07 Score=91.17 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=57.8
Q ss_pred Hhhhcccccccccc----cCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhH
Q 012587 338 EEVLAHSAVGGFLT----HCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 338 ~~il~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~ 413 (460)
..+++.+++ +|+. =||..++.||+++|+|+|.-|...++.+....+ .+.|.++.. -+.++|.+++.++++|
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~---~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV---EDAEDLAKAVTYLLTD 388 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE---CCHHHHHHHHHHHhcC
Confidence 677788887 3342 134446999999999999999888888877776 355766655 3789999999999997
Q ss_pred hHHHHHHHH
Q 012587 414 RKEEFMESA 422 (460)
Q Consensus 414 ~~~~~~~~a 422 (460)
++.+++.
T Consensus 389 --~~~~~~m 395 (425)
T PRK05749 389 --PDARQAY 395 (425)
T ss_pred --HHHHHHH
Confidence 6554433
No 59
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.05 E-value=1.6e-07 Score=88.70 Aligned_cols=301 Identities=15% Similarity=0.100 Sum_probs=160.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccch-hHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY-DRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
|||.|--.-. -|+.-+..+.++|.++||+|.+.+-.... ..+.+.. ++++..+..- ..+
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y-----------g~~y~~iG~~--------g~~ 60 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY-----------GIDYIVIGKH--------GDS 60 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc-----------CCCeEEEcCC--------CCC
Confidence 5676654433 49999999999999999999999864332 2333433 3777776531 123
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCC
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKG 165 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (460)
....+....... ..+..++++. +||++|+- ....+..+|.-+|+|+|.+.-+..........+|. ...-..|.
T Consensus 61 ~~~Kl~~~~~R~-~~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pl-a~~i~~P~-- 133 (335)
T PF04007_consen 61 LYGKLLESIERQ-YKLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPL-ADVIITPE-- 133 (335)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehhc-CCeeECCc--
Confidence 333333333322 3345555555 99999976 44568889999999999998764322111111110 00000000
Q ss_pred CccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEE-EcChhhhchhHHHHHhhcCCCceeEeCccccccccCCCccc
Q 012587 166 FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLI-LNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPEKT 244 (460)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 244 (460)
.+ . ......+. .+ ..+. ++.+.++ .++=|
T Consensus 134 ---------~~-----~----~~~~~~~G--~~-~~i~~y~G~~E~----------------ayl~~------------- 163 (335)
T PF04007_consen 134 ---------AI-----P----KEFLKRFG--AK-NQIRTYNGYKEL----------------AYLHP------------- 163 (335)
T ss_pred ---------cc-----C----HHHHHhcC--Cc-CCEEEECCeeeE----------------EeecC-------------
Confidence 00 0 00000000 11 1111 2332211 11111
Q ss_pred cCCCCccccchhhhhhhhcCCCCcEEEEEecCcc----cCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchH
Q 012587 245 YSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIA----VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEE 320 (460)
Q Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 320 (460)
+.+++++.+-+. -.+++.|++-+-+.. ......+..+++.+++.+..+++.-... ..+.-
T Consensus 164 ------F~Pd~~vl~~lg-~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~---------~~~~~ 227 (335)
T PF04007_consen 164 ------FKPDPEVLKELG-LDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE---------DQREL 227 (335)
T ss_pred ------CCCChhHHHHcC-CCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc---------chhhH
Confidence 012333444444 225678888777643 2234557778889988887644333211 11111
Q ss_pred HHHHhcCCceee-eecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcc
Q 012587 321 LLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 399 (460)
Q Consensus 321 ~~~~~~~n~~~~-~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~ 399 (460)
+ + .-++.+. .-+...++|.++++ +|+-|| ....||...|+|.+-+ +.++-...-+.+. +.|+-.+ ..+
T Consensus 228 ~-~--~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gll~~---~~~ 296 (335)
T PF04007_consen 228 F-E--KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGLLYH---STD 296 (335)
T ss_pred H-h--ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCCeEe---cCC
Confidence 1 1 1123333 55666689999997 888777 7889999999999975 2223222335564 4566333 346
Q ss_pred hHHHHHHHHHHH
Q 012587 400 RNIVEKAVNDLM 411 (460)
Q Consensus 400 ~~~l~~~i~~~l 411 (460)
.+++.+.+.+.+
T Consensus 297 ~~ei~~~v~~~~ 308 (335)
T PF04007_consen 297 PDEIVEYVRKNL 308 (335)
T ss_pred HHHHHHHHHHhh
Confidence 666666554443
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.04 E-value=6.8e-07 Score=86.93 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=58.8
Q ss_pred hcCCceeeeecC-hH---hhhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecC
Q 012587 325 TKERGCIAGWVP-QE---EVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 396 (460)
Q Consensus 325 ~~~n~~~~~~vp-~~---~il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~ 396 (460)
...++.+.+|++ +. .++..+++ +|.- |...++.||+++|+|+|+.... .....+ ...+.|..+ .
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~-~ 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLA-K 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEe-C
Confidence 345777889998 43 56888887 6663 3357999999999999876532 233344 233466666 4
Q ss_pred CcchHHHHHHHHHHHhHhHHH
Q 012587 397 LCDRNIVEKAVNDLMVERKEE 417 (460)
Q Consensus 397 ~~~~~~l~~~i~~~l~~~~~~ 417 (460)
..+.+++.+++.+++++ ++
T Consensus 314 ~~~~~~~~~~l~~l~~~--~~ 332 (365)
T cd03825 314 PGDPEDLAEGIEWLLAD--PD 332 (365)
T ss_pred CCCHHHHHHHHHHHHhC--HH
Confidence 45789999999999987 55
No 61
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.03 E-value=8.8e-07 Score=85.46 Aligned_cols=320 Identities=17% Similarity=0.146 Sum_probs=164.5
Q ss_pred EEEEEcCC---C-CCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 8 HVAILPLP---A-VGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 8 ~il~~~~~---~-~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
||++++.. . .|+...+..+++.|.+.||+|++++............. ....... . ..
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~----------~~~~~~~-------~--~~ 61 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG----------GIVVVRP-------P--PL 61 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec----------CcceecC-------C--cc
Confidence 45555553 2 68899999999999999999999997443221111000 0000000 0 00
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHH--HHHHHhCCceEEEecchhHHHHHHhhccccccCCCC
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAI--DAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGEL 161 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
.......... .....+...++.. +||+|+......... ..+...++|++............ .
T Consensus 62 ~~~~~~~~~~--~~~~~~~~~~~~~--~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~----------- 125 (374)
T cd03801 62 LRVRRLLLLL--LLALRLRRLLRRE--RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPG-N----------- 125 (374)
T ss_pred cccchhHHHH--HHHHHHHHHhhhc--CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccc-c-----------
Confidence 0001011111 1223445556665 999999887665333 47888899998765542211000 0
Q ss_pred CCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC----CceeEeCccccccc
Q 012587 162 PIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC----PNIYSIGPLNAHLK 237 (460)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~----~~~~~vG~~~~~~~ 237 (460)
. ............ .......+.+++.+....+. ... .. .++..+........
T Consensus 126 ------------~----~~~~~~~~~~~~--~~~~~~~d~~i~~s~~~~~~-----~~~-~~~~~~~~~~~i~~~~~~~~ 181 (374)
T cd03801 126 ------------E----LGLLLKLARALE--RRALRRADRIIAVSEATREE-----LRE-LGGVPPEKITVIPNGVDTER 181 (374)
T ss_pred ------------c----hhHHHHHHHHHH--HHHHHhCCEEEEecHHHHHH-----HHh-cCCCCCCcEEEecCcccccc
Confidence 0 000000111111 12235667777777543221 122 21 14454443332111
Q ss_pred cCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhh---C--CCcEEEEEccCCCCCCC
Q 012587 238 VRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVH---S--KKSFLWVIRPDLISGKD 312 (460)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~ 312 (460)
.. ........-.. ...+..+++.+|+... ...+..+++++.. . +.++++.. ..
T Consensus 182 ~~------------~~~~~~~~~~~-~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~G-~~------ 239 (374)
T cd03801 182 FR------------PAPRAARRRLG-IPEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIVG-DG------ 239 (374)
T ss_pred cC------------ccchHHHhhcC-CcCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEEe-Cc------
Confidence 00 00000011111 2234556677887652 2223334444433 2 23443332 11
Q ss_pred CCCCCchHHHH-----HhcCCceeeeecCh---Hhhhcccccccccc----cCChhHHHHHHHhCCceecccccccchhh
Q 012587 313 GENQIPEELLE-----ATKERGCIAGWVPQ---EEVLAHSAVGGFLT----HCGWNSTLESIVAGMPMICWPSFADQQIN 380 (460)
Q Consensus 313 ~~~~~~~~~~~-----~~~~n~~~~~~vp~---~~il~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 380 (460)
.....+.+ ...+++.+.+++++ ..++..+++ +|. -|..+++.||+++|+|+|+.+. ...
T Consensus 240 ---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~ 310 (374)
T cd03801 240 ---PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGI 310 (374)
T ss_pred ---HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CCh
Confidence 11111111 14568888999974 456788887 553 3556799999999999998765 345
Q ss_pred HHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHH
Q 012587 381 SRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMES 421 (460)
Q Consensus 381 a~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~ 421 (460)
...+ +..+.|... ...+.+++.+++.+++++ +..++.
T Consensus 311 ~~~~-~~~~~g~~~-~~~~~~~l~~~i~~~~~~--~~~~~~ 347 (374)
T cd03801 311 PEVV-EDGETGLLV-PPGDPEALAEAILRLLDD--PELRRR 347 (374)
T ss_pred hHHh-cCCcceEEe-CCCCHHHHHHHHHHHHcC--hHHHHH
Confidence 5566 345677777 445689999999999987 554443
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.01 E-value=3e-07 Score=89.14 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=83.5
Q ss_pred CcEEEEEecCcccCCHHHHHHHHHHHhhCC-CcEEEEEccCCCCCCCCCCCCchHHHH-----HhcCCceeeeecChH--
Q 012587 267 QSVIYVSFGSIAVMSRDQLIEFYYGLVHSK-KSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQE-- 338 (460)
Q Consensus 267 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~n~~~~~~vp~~-- 338 (460)
+..+++..|+... ......++++++++. .++++... |. ....+.+ ...+|+.+.+|+|+.
T Consensus 190 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~-------g~---~~~~~~~~~~~~~~~~~V~~~g~v~~~~~ 257 (357)
T cd03795 190 GRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGE-------GP---LEAELEALAAALGLLDRVRFLGRLDDEEK 257 (357)
T ss_pred CCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeC-------Ch---hHHHHHHHHHhcCCcceEEEcCCCCHHHH
Confidence 3456677887652 223455667776665 55554432 11 1122221 134689999999974
Q ss_pred -hhhcccccccccc---cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhH
Q 012587 339 -EVLAHSAVGGFLT---HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 339 -~il~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~ 413 (460)
.++..+++-++.+ +.|. .++.||+++|+|+|+....+.. ..+.+..+.|... ..-+.+++.++|.++++|
T Consensus 258 ~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~~~g~~~-~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 258 AALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHGVTGLVV-PPGDPAALAEAIRRLLED 332 (357)
T ss_pred HHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCCCceEEe-CCCCHHHHHHHHHHHHHC
Confidence 5777888733333 2343 4799999999999987644433 2331113567666 445899999999999997
Q ss_pred hHHHHHH
Q 012587 414 RKEEFME 420 (460)
Q Consensus 414 ~~~~~~~ 420 (460)
++.++
T Consensus 333 --~~~~~ 337 (357)
T cd03795 333 --PELRE 337 (357)
T ss_pred --HHHHH
Confidence 54443
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.99 E-value=1e-06 Score=84.47 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=64.2
Q ss_pred cCCceeeeecC-hHhhhcccccccccccC----ChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 326 KERGCIAGWVP-QEEVLAHSAVGGFLTHC----GWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 326 ~~n~~~~~~vp-~~~il~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
..++.+.++.. -..++..+++ +|.-. ...++.||+++|+|+|+.+..+.+ ..+.+....|... +..+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~-~~~~~ 306 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLV-PNGDV 306 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEe-CCCCH
Confidence 34666666633 4778888887 55443 257899999999999987544333 2232332277777 45678
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 012587 401 NIVEKAVNDLMVERKEEFMESADRMANLAK 430 (460)
Q Consensus 401 ~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~ 430 (460)
+++.+++.++++| ++.+++..+-+..+.
T Consensus 307 ~~~~~~i~~ll~~--~~~~~~~~~~~~~~~ 334 (348)
T cd03820 307 EALAEALLRLMED--EELRKRMGANARESA 334 (348)
T ss_pred HHHHHHHHHHHcC--HHHHHHHHHHHHHHH
Confidence 9999999999998 776655554443333
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.99 E-value=3.9e-06 Score=83.15 Aligned_cols=88 Identities=17% Similarity=0.035 Sum_probs=62.3
Q ss_pred cCCceeeeecChH---hhhcccccccccc---cCC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCc
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLT---HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 398 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~ 398 (460)
.+|+.+.+++++. .+++.+++ +|. +.| ..++.||+++|+|+|+.... .....+ +..+.|..+ ..-
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~-~~~ 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLV-DGH 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEEC-CCC
Confidence 3578888999864 56888987 552 233 35899999999999986543 333445 344567766 445
Q ss_pred chHHHHHHHHHHHhHhHHHHHHHHH
Q 012587 399 DRNIVEKAVNDLMVERKEEFMESAD 423 (460)
Q Consensus 399 ~~~~l~~~i~~~l~~~~~~~~~~a~ 423 (460)
+.+++.+++.+++++ +..+++..
T Consensus 354 d~~~la~~i~~~l~~--~~~~~~~~ 376 (405)
T TIGR03449 354 DPADWADALARLLDD--PRTRIRMG 376 (405)
T ss_pred CHHHHHHHHHHHHhC--HHHHHHHH
Confidence 889999999999987 55444433
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.97 E-value=2.2e-06 Score=82.94 Aligned_cols=313 Identities=18% Similarity=0.115 Sum_probs=158.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHh
Q 012587 16 AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNC 95 (460)
Q Consensus 16 ~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
..|+..-...+++.|.+.||+|++++............. ................ ..........
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~---- 77 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK----------GRLVGVERLPVLLPVV-PLLKGPLLYL---- 77 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc----------cccccccccccCcchh-hccccchhHH----
Confidence 478888899999999999999999997543222211100 0000000000000000 0000111111
Q ss_pred hCcHHHHHHHH--cCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCCCccCC
Q 012587 96 ATPPLLKEMVS--DSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGFLRCR 170 (460)
Q Consensus 96 ~~~~~l~~~~~--~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (460)
.....+..+++ .. +||+|++..... ....++...|+|++........... .
T Consensus 78 ~~~~~~~~~l~~~~~--~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----~----------------- 133 (377)
T cd03798 78 LAARALLKLLKLKRF--RPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLL-----P----------------- 133 (377)
T ss_pred HHHHHHHHHHhcccC--CCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhccc-----C-----------------
Confidence 12234556665 54 999999885443 3556667788898875543211100 0
Q ss_pred CCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcC--C-CceeEeCccccccccCCCccccCC
Q 012587 171 DLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS--C-PNIYSIGPLNAHLKVRIPEKTYSS 247 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~--~-~~~~~vG~~~~~~~~~~~~~~~~~ 247 (460)
.........+ ......+.+++.+....+. ... . . .++..++..........
T Consensus 134 -----------~~~~~~~~~~--~~~~~~d~ii~~s~~~~~~-----~~~-~~~~~~~~~~i~~~~~~~~~~~------- 187 (377)
T cd03798 134 -----------RKRLLRALLR--RALRRADAVIAVSEALADE-----LKA-LGIDPEKVTVIPNGVDTERFSP------- 187 (377)
T ss_pred -----------chhhHHHHHH--HHHhcCCeEEeCCHHHHHH-----HHH-hcCCCCceEEcCCCcCcccCCC-------
Confidence 0001111111 2235667777777433221 122 2 1 34555554332211100
Q ss_pred CCccccchhhhhhhhcCCCCcEEEEEecCcccC-CHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHH--
Q 012587 248 SSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVM-SRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEA-- 324 (460)
Q Consensus 248 ~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-- 324 (460)
...... .-+. ...++.+++..|+.... ..+.+-..+..+...+.++.+.+.+. +. ....+.+.
T Consensus 188 ----~~~~~~-~~~~-~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~-----~~---~~~~~~~~~~ 253 (377)
T cd03798 188 ----ADRAEA-RKLG-LPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGD-----GP---LREALEALAA 253 (377)
T ss_pred ----cchHHH-Hhcc-CCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcC-----Cc---chHHHHHHHH
Confidence 000000 0111 22345677788876532 23333333344433322333333211 11 11112111
Q ss_pred ---hcCCceeeeecChH---hhhccccccccc----ccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeee
Q 012587 325 ---TKERGCIAGWVPQE---EVLAHSAVGGFL----THCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 394 (460)
Q Consensus 325 ---~~~n~~~~~~vp~~---~il~~~~~~~~I----~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~ 394 (460)
..+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+.+.. .....+ +..+.|...
T Consensus 254 ~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~ 326 (377)
T cd03798 254 ELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLV 326 (377)
T ss_pred hcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEE
Confidence 24688888999864 56778887 54 224567899999999999986543 344556 455666666
Q ss_pred cCCcchHHHHHHHHHHHhHhHHH
Q 012587 395 KDLCDRNIVEKAVNDLMVERKEE 417 (460)
Q Consensus 395 ~~~~~~~~l~~~i~~~l~~~~~~ 417 (460)
...+.+++.+++.+++++ +.
T Consensus 327 -~~~~~~~l~~~i~~~~~~--~~ 346 (377)
T cd03798 327 -PPGDPEALAEAILRLLAD--PW 346 (377)
T ss_pred -CCCCHHHHHHHHHHHhcC--cH
Confidence 556899999999999997 55
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.94 E-value=1.8e-06 Score=85.14 Aligned_cols=83 Identities=16% Similarity=0.078 Sum_probs=58.5
Q ss_pred cCCceeeeecChH---hhhccccccccccc---CC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCc
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLTH---CG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 398 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~ 398 (460)
.+|+.+.+++|.. .++..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+ ...+.|... . .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~-~-~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLC-E-P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEe-C-C
Confidence 4688899999975 56788887 5532 22 35789999999999987443 233445 343567666 3 3
Q ss_pred chHHHHHHHHHHHhHhHHHHH
Q 012587 399 DRNIVEKAVNDLMVERKEEFM 419 (460)
Q Consensus 399 ~~~~l~~~i~~~l~~~~~~~~ 419 (460)
+.+++.+++.+++++ ++.+
T Consensus 350 ~~~~~a~~i~~l~~~--~~~~ 368 (392)
T cd03805 350 TPEEFAEAMLKLAND--PDLA 368 (392)
T ss_pred CHHHHHHHHHHHHhC--hHHH
Confidence 789999999999987 5433
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.91 E-value=2.8e-06 Score=83.98 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=53.9
Q ss_pred cCCceeeeecCh---Hhhhcccccccccc---cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCc
Q 012587 326 KERGCIAGWVPQ---EEVLAHSAVGGFLT---HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 398 (460)
Q Consensus 326 ~~n~~~~~~vp~---~~il~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~ 398 (460)
.+++.+.+|+|+ ..+++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+ +. |-+... . .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~-~-~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA-E-P 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec-C-C
Confidence 456888899986 457778887 543 3344 49999999999999877542 22344 33 433222 2 3
Q ss_pred chHHHHHHHHHHHhH
Q 012587 399 DRNIVEKAVNDLMVE 413 (460)
Q Consensus 399 ~~~~l~~~i~~~l~~ 413 (460)
+.+++.+++.+++++
T Consensus 319 ~~~~l~~~l~~~l~~ 333 (398)
T cd03796 319 DVESIVRKLEEAISI 333 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999999884
No 68
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.91 E-value=7.1e-07 Score=85.06 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=88.6
Q ss_pred CcEEEEEecCcccCCHHHHHHHHHHHhhCCCc-EEEEEccCCCCCCCCCCCCchHHHHHhcC--CceeeeecChHhhhcc
Q 012587 267 QSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKS-FLWVIRPDLISGKDGENQIPEELLEATKE--RGCIAGWVPQEEVLAH 343 (460)
Q Consensus 267 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--n~~~~~~vp~~~il~~ 343 (460)
+++|.+-.||....-...+..+.++.+.+..+ .++.+.. .. .. +.+.+...+ .+.+.+ .-.+++..
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~-------a~-~~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPS-------FF-KG-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeC-------CC-cH-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 47899999998754445555455555543221 2222221 10 11 222222211 222232 34678888
Q ss_pred cccccccccCChhHHHHHHHhCCceeccccc--ccchhhHHHHH--hhhceeeee-------------c-CCcchHHHHH
Q 012587 344 SAVGGFLTHCGWNSTLESIVAGMPMICWPSF--ADQQINSRFVG--EVWKLGLDI-------------K-DLCDRNIVEK 405 (460)
Q Consensus 344 ~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~~~--e~~G~g~~~-------------~-~~~~~~~l~~ 405 (460)
+++ +|+-.|..|+ |+..+|+|||+ +.- .=|..||+++. ...|+.-.+ . +++|++.|.+
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 997 9999999999 99999999999 543 46788998884 033443222 2 5799999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHH
Q 012587 406 AVNDLMVERKEEFMESADRMANLA 429 (460)
Q Consensus 406 ~i~~~l~~~~~~~~~~a~~l~~~~ 429 (460)
.+.+ +.. ..+++..+++.+.+
T Consensus 312 ~i~~-~~~--~~~~~~~~~l~~~l 332 (347)
T PRK14089 312 AYKE-MDR--EKFFKKSKELREYL 332 (347)
T ss_pred HHHH-HHH--HHHHHHHHHHHHHh
Confidence 9888 333 55666666666655
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.90 E-value=7.2e-06 Score=79.47 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=61.1
Q ss_pred cCCceeeeecChH---hhhccccccccccc-CC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLTH-CG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~H-GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
.+++.+.+|+++. .++..+++-++-++ .| ..++.||+++|+|+|+.+. ......+ .. +.|.... .+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~--~~~ 332 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVD--DDV 332 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeC--CCh
Confidence 4688888999954 45788887222222 22 4689999999999998753 3344555 34 7777664 244
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012587 401 NIVEKAVNDLMVERKEEFMESADRMA 426 (460)
Q Consensus 401 ~~l~~~i~~~l~~~~~~~~~~a~~l~ 426 (460)
+++.+++.+++++ ++.+++..+-+
T Consensus 333 ~~~~~~i~~l~~~--~~~~~~~~~~~ 356 (375)
T cd03821 333 DALAAALRRALEL--PQRLKAMGENG 356 (375)
T ss_pred HHHHHHHHHHHhC--HHHHHHHHHHH
Confidence 9999999999997 54444443333
No 70
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.89 E-value=2e-07 Score=90.94 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=83.2
Q ss_pred CCcEEEEEecCcccC-CHHHHHHHHHHHhhCCC-cEEEEEccCCCCCCCCCCCCchHHHH---Hh---cCCceeeeecCh
Q 012587 266 KQSVIYVSFGSIAVM-SRDQLIEFYYGLVHSKK-SFLWVIRPDLISGKDGENQIPEELLE---AT---KERGCIAGWVPQ 337 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~---~~---~~n~~~~~~vp~ 337 (460)
+++.|++++|..... ....+..++++++.+.. ++++....+ . .....+.+ +. .+|+.+.++.++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~--~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------P--RTRPRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------C--ChHHHHHHHHHhhccCCCCEEEECCcCH
Confidence 467788888876543 24456777777776533 244443321 1 11122221 11 357777766654
Q ss_pred ---HhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhH
Q 012587 338 ---EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 338 ---~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~ 413 (460)
..++..+++ +|+-.| |.+.||+++|+|+|+++.. |. +..+. +.|++..+. .+.++|.+++.+++++
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~--~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG--TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC--CCHHHHHHHHHHHhcC
Confidence 356777887 999998 7888999999999998743 21 33343 457776663 2589999999999986
No 71
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.85 E-value=2.6e-05 Score=78.09 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=58.4
Q ss_pred cCCceeeeecChHhh---hccc----ccccccccC---C-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeee
Q 012587 326 KERGCIAGWVPQEEV---LAHS----AVGGFLTHC---G-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 394 (460)
Q Consensus 326 ~~n~~~~~~vp~~~i---l~~~----~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~ 394 (460)
.+++.+.+++++.++ ++.+ ++ ||.-. | ..++.||+++|+|+|+.... .....+ +....|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEe
Confidence 467777788886554 5544 55 66543 3 35999999999999988643 244445 343467766
Q ss_pred cCCcchHHHHHHHHHHHhHhHHHHH
Q 012587 395 KDLCDRNIVEKAVNDLMVERKEEFM 419 (460)
Q Consensus 395 ~~~~~~~~l~~~i~~~l~~~~~~~~ 419 (460)
..-+.++|.++|.++++| +..+
T Consensus 389 -~~~d~~~la~~i~~ll~~--~~~~ 410 (439)
T TIGR02472 389 -DVLDLEAIASALEDALSD--SSQW 410 (439)
T ss_pred -CCCCHHHHHHHHHHHHhC--HHHH
Confidence 446889999999999997 5543
No 72
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.84 E-value=2.7e-06 Score=82.93 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=62.4
Q ss_pred cCCceeeeecChH---hhhccccccccccc----------CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceee
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLTH----------CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 392 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~H----------GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~ 392 (460)
.+++.+.+++|+. .++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 5678888999864 44788887 5431 2357999999999999987653 355566 3557787
Q ss_pred eecCCcchHHHHHHHHHHHhHhHHHHHH
Q 012587 393 DIKDLCDRNIVEKAVNDLMVERKEEFME 420 (460)
Q Consensus 393 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 420 (460)
.+ ...+.+++.+++.++++| +..++
T Consensus 317 ~~-~~~d~~~l~~~i~~l~~~--~~~~~ 341 (367)
T cd05844 317 LV-PEGDVAALAAALGRLLAD--PDLRA 341 (367)
T ss_pred EE-CCCCHHHHHHHHHHHHcC--HHHHH
Confidence 77 456789999999999997 55443
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.83 E-value=1.7e-06 Score=83.19 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=77.0
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHH--hcCCceeeeecChH---hhhccc
Q 012587 270 IYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEA--TKERGCIAGWVPQE---EVLAHS 344 (460)
Q Consensus 270 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~n~~~~~~vp~~---~il~~~ 344 (460)
+++..|.... ......+++++++.+.++++.-.+. ....+.....+. ..+++.+.+++++. .+++.+
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~------~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVS------DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCC------CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 4455676642 2233456677777787776654211 000111111111 25788899999975 467888
Q ss_pred ccccccc--cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhH
Q 012587 345 AVGGFLT--HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 345 ~~~~~I~--HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~ 413 (460)
++-++-+ +-|. .++.||+++|+|+|+.... .....+ +....|...+. .+++.+++.++++.
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVDS---VEELAAAVARADRL 308 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeCC---HHHHHHHHHHHhcc
Confidence 8723323 2343 5899999999999987643 333445 34236776632 89999999998763
No 74
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.79 E-value=2.7e-05 Score=75.37 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=77.8
Q ss_pred CCcEEEEEecCccc-CCHHHHHHHHHHHhhC--CCcEEEEEccCCCCCCCCCCCCchHHH---H--HhcCCceeeeecC-
Q 012587 266 KQSVIYVSFGSIAV-MSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELL---E--ATKERGCIAGWVP- 336 (460)
Q Consensus 266 ~~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~--~~~~n~~~~~~vp- 336 (460)
+...+++..|++.. ...+.+...+..+... +.+++++-.+. ........+. . ...+++.+.+|.+
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~------~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ------GRRFYYAELLELIKRLGLQDRVTFVGHCSD 256 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc------ccchHHHHHHHHHHHcCCcceEEEcCCccc
Confidence 34556677787653 2345455555555543 34444433211 0001111111 1 1245788888854
Q ss_pred hHhhhcccccccccc--cCC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHh
Q 012587 337 QEEVLAHSAVGGFLT--HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 337 ~~~il~~~~~~~~I~--HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
...++..+++-++-+ +-| ..++.||+++|+|+|+.... .....+ ...+.|..+ ..-+.+.+.++|..++.
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i-~~~~~g~~~-~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETV-RPGETGLLV-PPGDAEALAQALDQILS 329 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHH-hCCCceEEe-CCCCHHHHHHHHHHHHh
Confidence 367888888833323 223 35999999999999986532 234455 344477777 45688999999976664
No 75
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.78 E-value=9.5e-06 Score=78.67 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=56.6
Q ss_pred cCCceee-eecCh---Hhhhcccccccccc--c----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec
Q 012587 326 KERGCIA-GWVPQ---EEVLAHSAVGGFLT--H----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK 395 (460)
Q Consensus 326 ~~n~~~~-~~vp~---~~il~~~~~~~~I~--H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~ 395 (460)
.+|+.+. .|+|+ ..++..+++ +|. + |..+++.||+++|+|+|+.+..+ ...+ ...+.|...
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~- 316 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLV- 316 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEE-
Confidence 4677777 45885 567788887 552 2 33568999999999999887544 2334 234667766
Q ss_pred CCcchHHHHHHHHHHHhH
Q 012587 396 DLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 396 ~~~~~~~l~~~i~~~l~~ 413 (460)
..-+.+++.+++.+++++
T Consensus 317 ~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 317 PPGDPAALAEAIRRLLAD 334 (366)
T ss_pred cCCCHHHHHHHHHHHHcC
Confidence 445689999999999986
No 76
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.77 E-value=1.7e-05 Score=76.53 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=54.6
Q ss_pred CCceeeeecC-hHhhhcccccccccccCC----hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchH
Q 012587 327 ERGCIAGWVP-QEEVLAHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 401 (460)
Q Consensus 327 ~n~~~~~~vp-~~~il~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~ 401 (460)
+++.+.+... ...++..+++ +|..+. .+++.||+++|+|+|+.. ...+...+ +. .|..+ ..-+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~-~~~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLV-PPGDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEe-CCCCHH
Confidence 4566555444 3678888887 665433 479999999999999854 34455555 34 55555 334789
Q ss_pred HHHHHHHHHHhH
Q 012587 402 IVEKAVNDLMVE 413 (460)
Q Consensus 402 ~l~~~i~~~l~~ 413 (460)
++.+++.+++++
T Consensus 321 ~l~~~i~~l~~~ 332 (365)
T cd03807 321 ALAEAIEALLAD 332 (365)
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
No 77
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.77 E-value=9.6e-06 Score=78.64 Aligned_cols=87 Identities=13% Similarity=0.146 Sum_probs=59.2
Q ss_pred cCCceeeeecCh-Hhhhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
.+|+.+.++..+ ..++..+++ +|.- |..+++.||+++|+|+|+. |...+...+ +. .|..+ ...+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~-~~~~~ 313 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIV-PISDP 313 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEe-CCCCH
Confidence 357888877654 678888887 4432 2257899999999999974 445555566 34 34344 33688
Q ss_pred HHHHHHHHHHHh-HhHHHHHHHHHH
Q 012587 401 NIVEKAVNDLMV-ERKEEFMESADR 424 (460)
Q Consensus 401 ~~l~~~i~~~l~-~~~~~~~~~a~~ 424 (460)
+++.+++.++++ + +.+++....
T Consensus 314 ~~~~~~i~~ll~~~--~~~~~~~~~ 336 (360)
T cd04951 314 EALANKIDEILKMS--GEERDIIGA 336 (360)
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHH
Confidence 999999999984 4 455544443
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.70 E-value=6.5e-06 Score=80.14 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=76.6
Q ss_pred cEEEEEecCcccCCHHHHHHHHHHHhhC--CCcEEEEEccCCCCCCCCCCCCchHHHH-----HhcCCceeeeecCh--H
Q 012587 268 SVIYVSFGSIAVMSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQ--E 338 (460)
Q Consensus 268 ~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~n~~~~~~vp~--~ 338 (460)
+.+++..|.........+..+++++... +.++++ ++. |. ..+.+.+ ..++++.+.+|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~------g~---~~~~l~~~~~~~~l~~~v~f~G~~~~~~~ 249 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGD------GS---DFEKCKAYSRELGIEQRIIWHGWQSQPWE 249 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeC------Cc---cHHHHHHHHHHcCCCCeEEEecccCCcHH
Confidence 4556777776432223345566666654 334444 322 11 1122221 13468888898753 3
Q ss_pred ---hhhcccccccccc--c--CChhHHHHHHHhCCceeccc-ccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHH
Q 012587 339 ---EVLAHSAVGGFLT--H--CGWNSTLESIVAGMPMICWP-SFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDL 410 (460)
Q Consensus 339 ---~il~~~~~~~~I~--H--GG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~ 410 (460)
+.+..+++ +|. + |-..++.||+++|+|+|+.- ..+ ....+ +....|..+ ..-+.+++.++|.++
T Consensus 250 ~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv-~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELY-TPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEE-CCCCHHHHHHHHHHH
Confidence 33445676 553 3 33579999999999999875 322 22344 444567777 456999999999999
Q ss_pred HhH
Q 012587 411 MVE 413 (460)
Q Consensus 411 l~~ 413 (460)
++|
T Consensus 322 ~~~ 324 (359)
T PRK09922 322 ISG 324 (359)
T ss_pred HhC
Confidence 997
No 79
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.69 E-value=3.4e-05 Score=74.62 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=58.4
Q ss_pred cCCceeeeecCh---Hhhhcccccccccc----------cCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceee
Q 012587 326 KERGCIAGWVPQ---EEVLAHSAVGGFLT----------HCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 392 (460)
Q Consensus 326 ~~n~~~~~~vp~---~~il~~~~~~~~I~----------HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~ 392 (460)
++|+.+.+++|+ ..++..+++ +|. -|...++.||+++|+|+|+.+... ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 468888999985 456677887 554 233579999999999999876422 23345 3434777
Q ss_pred eecCCcchHHHHHHHHHHHhH
Q 012587 393 DIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 393 ~~~~~~~~~~l~~~i~~~l~~ 413 (460)
.. ..-+.+++.++|.+++++
T Consensus 308 ~~-~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LV-PPGDPEALADAIERLLDD 327 (355)
T ss_pred Ee-CCCCHHHHHHHHHHHHhC
Confidence 77 445899999999999986
No 80
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.66 E-value=1.2e-05 Score=77.16 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=54.9
Q ss_pred cCCceeeeecCh-Hhhhcccccccccc--c--CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLT--H--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~--H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
.+++.+.++.+. ..++..+++ +|. + |..+++.||+++|+|+|+.... .....+ +..+.|... ..-+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~-~~~~~ 316 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLV-PVGDE 316 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEE-CCCCH
Confidence 457778888774 678888887 552 2 3356899999999999986443 455566 455677777 44566
Q ss_pred HHH---HHHHHHHHhH
Q 012587 401 NIV---EKAVNDLMVE 413 (460)
Q Consensus 401 ~~l---~~~i~~~l~~ 413 (460)
+.+ .+.+.+++++
T Consensus 317 ~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 317 AALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHHhccCC
Confidence 776 4555555555
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.64 E-value=2.9e-05 Score=75.30 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=81.9
Q ss_pred CCcEEEEEecCccc-CCHHHHHHHHHHHhhC--CCcEEEEEccCCCCCCCCCCCCchHHHH-----HhcCCceeeeecCh
Q 012587 266 KQSVIYVSFGSIAV-MSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQ 337 (460)
Q Consensus 266 ~~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~n~~~~~~vp~ 337 (460)
+.+.+++..|+... ...+.+-..+..+.+. +.+++++ +. |. ....+.+ ...+++.+.++..+
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~iv-G~------g~---~~~~~~~~~~~~~~~~~v~~~g~~~~ 259 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLV-GD------GE---LEEEIKKKVKELGLEDKVIFLGVRND 259 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEE-eC------Cc---hHHHHHHHHHhcCCCCcEEEecccCC
Confidence 44566677787653 2334444444444433 3344443 21 11 1111211 12467777777544
Q ss_pred -Hhhhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHh
Q 012587 338 -EEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 338 -~~il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
..++..+++ +|+- |-..++.||+++|+|+|+....+ ....+ +. +.|... ...++++++++|.++++
T Consensus 260 ~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~-~~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 260 VPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLS-LDESPEIWAEEILKLKS 330 (358)
T ss_pred HHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEe-CCCCHHHHHHHHHHHHh
Confidence 778888887 5532 44579999999999999865433 33345 34 566555 33468999999999999
Q ss_pred HhHHHHHHHH
Q 012587 413 ERKEEFMESA 422 (460)
Q Consensus 413 ~~~~~~~~~a 422 (460)
| +..+++.
T Consensus 331 ~--~~~~~~~ 338 (358)
T cd03812 331 E--DRRERSS 338 (358)
T ss_pred C--cchhhhh
Confidence 8 6655544
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.64 E-value=2.3e-05 Score=76.10 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=52.1
Q ss_pred hcCCceeeeecChHh---hhcccccccccccC----Ch-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecC
Q 012587 325 TKERGCIAGWVPQEE---VLAHSAVGGFLTHC----GW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 396 (460)
Q Consensus 325 ~~~n~~~~~~vp~~~---il~~~~~~~~I~HG----G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~ 396 (460)
..+++.+.+++++.+ ++..+++ ++.+. |. .++.||+++|+|+|+....+ +...+ +. .|....
T Consensus 246 ~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~- 315 (363)
T cd04955 246 ADPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFK- 315 (363)
T ss_pred CCCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEec-
Confidence 346888899999864 5666676 44433 32 58999999999999875432 22223 22 333332
Q ss_pred CcchHHHHHHHHHHHhHhHHHHHH
Q 012587 397 LCDRNIVEKAVNDLMVERKEEFME 420 (460)
Q Consensus 397 ~~~~~~l~~~i~~~l~~~~~~~~~ 420 (460)
.-+ .+.+++.+++++ ++..+
T Consensus 316 ~~~--~l~~~i~~l~~~--~~~~~ 335 (363)
T cd04955 316 VGD--DLASLLEELEAD--PEEVS 335 (363)
T ss_pred Cch--HHHHHHHHHHhC--HHHHH
Confidence 112 299999999987 54433
No 83
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.63 E-value=0.00012 Score=78.34 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=59.9
Q ss_pred cCCceeeeecChHh---hhccc----cccccccc---CCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeee
Q 012587 326 KERGCIAGWVPQEE---VLAHS----AVGGFLTH---CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 394 (460)
Q Consensus 326 ~~n~~~~~~vp~~~---il~~~----~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~ 394 (460)
.++|.+.+++++.+ ++..+ ++ ||.- =|+ .++.||+++|+|+|+....+ ....+ +....|..+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEE
Confidence 46777778888754 45544 34 6653 343 58999999999999986433 22333 233457666
Q ss_pred cCCcchHHHHHHHHHHHhHhHHHHHHHHHH
Q 012587 395 KDLCDRNIVEKAVNDLMVERKEEFMESADR 424 (460)
Q Consensus 395 ~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~ 424 (460)
...+.+.|+++|.++++| +..+++..+
T Consensus 620 -dP~D~eaLA~AL~~LL~D--pelr~~m~~ 646 (1050)
T TIGR02468 620 -DPHDQQAIADALLKLVAD--KQLWAECRQ 646 (1050)
T ss_pred -CCCCHHHHHHHHHHHhhC--HHHHHHHHH
Confidence 456889999999999997 665544433
No 84
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=0.00028 Score=67.30 Aligned_cols=308 Identities=16% Similarity=0.180 Sum_probs=172.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhC--CCeEEEEe-CccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHH
Q 012587 13 PLPAVGHVNSMLNLAELLGHA--GIKITFLN-TEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPEL 89 (460)
Q Consensus 13 ~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
=.-+.|-++-.++|.++|+++ ++.+++-+ ++...+.+.+..++ .+...-+| -+
T Consensus 55 HaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~---------~v~h~YlP----~D----------- 110 (419)
T COG1519 55 HAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD---------SVIHQYLP----LD----------- 110 (419)
T ss_pred EecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC---------CeEEEecC----cC-----------
Confidence 334789999999999999999 88888888 55667777666441 12222222 11
Q ss_pred HHHHHhhCcHHHHHHHHcCCCCccEEE-EcCCcc-hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCCCc
Q 012587 90 VDSLNCATPPLLKEMVSDSKSPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGFL 167 (460)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~pD~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (460)
....++..++.+ +||++| .++-.| ....-+++.|+|.+.++-=-. .. +
T Consensus 111 -------~~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS----------~r---S-------- 160 (419)
T COG1519 111 -------LPIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNARLS----------DR---S-------- 160 (419)
T ss_pred -------chHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec----------hh---h--------
Confidence 224567778887 999876 554444 456667789999999764210 00 0
Q ss_pred cCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCC-CceeEeCccccccccCCCccccC
Q 012587 168 RCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYS 246 (460)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~ 246 (460)
+. .-...+.+.+.. ..+.+.++..+-.+ -..+ .. .. +++...|-+-......+
T Consensus 161 --------~~----~y~k~~~~~~~~--~~~i~li~aQse~D--~~Rf---~~-LGa~~v~v~GNlKfd~~~~~------ 214 (419)
T COG1519 161 --------FA----RYAKLKFLARLL--FKNIDLILAQSEED--AQRF---RS-LGAKPVVVTGNLKFDIEPPP------ 214 (419)
T ss_pred --------hH----HHHHHHHHHHHH--HHhcceeeecCHHH--HHHH---Hh-cCCcceEEecceeecCCCCh------
Confidence 00 000111111111 24455666666322 1111 22 22 45677776543322110
Q ss_pred CCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhCC--CcEEEEEccCCCCCCCCCCCCch--HHH
Q 012587 247 SSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK--KSFLWVIRPDLISGKDGENQIPE--ELL 322 (460)
Q Consensus 247 ~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~--~~~ 322 (460)
....+...|-..-++...++|..+|.. ...+.+.....++.+.. ...||+ .-+ ++..+. ++.
T Consensus 215 -----~~~~~~~~~r~~l~~~r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlV-PRH-------pERf~~v~~l~ 280 (419)
T COG1519 215 -----QLAAELAALRRQLGGHRPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILV-PRH-------PERFKAVENLL 280 (419)
T ss_pred -----hhHHHHHHHHHhcCCCCceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEe-cCC-------hhhHHHHHHHH
Confidence 112223333332222133446666632 33344444555555432 333443 211 000100 000
Q ss_pred HH---------------hcCCceeeeecC-hHhhhcccccccc-----cccCChhHHHHHHHhCCceecccccccchhhH
Q 012587 323 EA---------------TKERGCIAGWVP-QEEVLAHSAVGGF-----LTHCGWNSTLESIVAGMPMICWPSFADQQINS 381 (460)
Q Consensus 323 ~~---------------~~~n~~~~~~vp-~~~il~~~~~~~~-----I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na 381 (460)
.+ ...++.+.+-+- ...++.-+++ +| +-+||+| ..|++++|+|++.=|+...|.+-+
T Consensus 281 ~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~ 358 (419)
T COG1519 281 KRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIA 358 (419)
T ss_pred HHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHH
Confidence 00 123566666554 3455555555 44 4588887 579999999999999999999999
Q ss_pred HHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHH
Q 012587 382 RFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESA 422 (460)
Q Consensus 382 ~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a 422 (460)
+++ ++.|.|+.++ +.+.|.+++..+++| +..+++.
T Consensus 359 ~~l-~~~ga~~~v~---~~~~l~~~v~~l~~~--~~~r~~~ 393 (419)
T COG1519 359 ERL-LQAGAGLQVE---DADLLAKAVELLLAD--EDKREAY 393 (419)
T ss_pred HHH-HhcCCeEEEC---CHHHHHHHHHHhcCC--HHHHHHH
Confidence 999 5889999994 388888888888886 4444444
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.55 E-value=7.1e-05 Score=73.19 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCceee-eecChHhh---hcccccccccc----c--CC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec
Q 012587 327 ERGCIA-GWVPQEEV---LAHSAVGGFLT----H--CG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK 395 (460)
Q Consensus 327 ~n~~~~-~~vp~~~i---l~~~~~~~~I~----H--GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~ 395 (460)
+|+.+. .|+|+.++ |+.+++ +|. . -| -+++.||+++|+|+|+.... .+...+ +.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC
Confidence 456655 47887555 889998 552 1 12 35799999999999997532 245555 4556788874
Q ss_pred CCcchHHHHHHHHHHH
Q 012587 396 DLCDRNIVEKAVNDLM 411 (460)
Q Consensus 396 ~~~~~~~l~~~i~~~l 411 (460)
+.++|.+++.++|
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 5888988888774
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.53 E-value=0.00022 Score=70.04 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=76.2
Q ss_pred cEEEEEecCcccCCHHHHHHHHHHHhhC--CCcEEEEEccCCCCCCCCCCCCchHHHHH---h---cCCceee-eecCh-
Q 012587 268 SVIYVSFGSIAVMSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLEA---T---KERGCIA-GWVPQ- 337 (460)
Q Consensus 268 ~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~---~~n~~~~-~~vp~- 337 (460)
..+++..|.... ...+..++++++.+ +.++++..++. ....+...+.+. . .+++.+. +++++
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAP------DTPEVAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCC------CcHHHHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 445566777653 22344555556554 45555554321 100111111111 1 1235544 67775
Q ss_pred --Hhhhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch------HHHHH
Q 012587 338 --EEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR------NIVEK 405 (460)
Q Consensus 338 --~~il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~------~~l~~ 405 (460)
..++..+++ +|.= |...++.||+++|+|+|+... ......+ +..+.|..++ .-+. +.+.+
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~-~~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVP-PDNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcC-CCCCcccchHHHHHH
Confidence 556788887 5532 223577999999999998654 2344555 4445687775 2233 88999
Q ss_pred HHHHHHhHhHHHHHH
Q 012587 406 AVNDLMVERKEEFME 420 (460)
Q Consensus 406 ~i~~~l~~~~~~~~~ 420 (460)
+|.++++| +..++
T Consensus 345 ~i~~l~~~--~~~~~ 357 (388)
T TIGR02149 345 AINILLAD--PELAK 357 (388)
T ss_pred HHHHHHhC--HHHHH
Confidence 99999987 55443
No 87
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.53 E-value=0.00011 Score=72.77 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=51.1
Q ss_pred eeeecChHhhhcccccccccccC----ChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHH
Q 012587 331 IAGWVPQEEVLAHSAVGGFLTHC----GWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKA 406 (460)
Q Consensus 331 ~~~~vp~~~il~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~ 406 (460)
+.++....+++..+++ ||.-+ =..++.||+++|+|+|+.-..+ + ..+ ..-+-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec---CCHHHHHHH
Confidence 3466667779988887 77663 3478999999999999886443 2 334 233444444 368899999
Q ss_pred HHHHHhH
Q 012587 407 VNDLMVE 413 (460)
Q Consensus 407 i~~~l~~ 413 (460)
+.++|++
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999984
No 88
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.47 E-value=0.00023 Score=71.89 Aligned_cols=134 Identities=12% Similarity=0.110 Sum_probs=74.0
Q ss_pred CcEEEEEecCccc-CCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHH---HHhcCCcee-eeecCh--Hh
Q 012587 267 QSVIYVSFGSIAV-MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL---EATKERGCI-AGWVPQ--EE 339 (460)
Q Consensus 267 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~~~-~~~vp~--~~ 339 (460)
+..+++..|.+.. ...+.+...+..+.+.+.+++++-. |.. ...+.+. ++.+.++.+ .+|-.. ..
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~-------g~~-~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGT-------GDP-ELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEec-------CcH-HHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 3445667777653 2233333333333333667666532 110 1112222 234456554 355322 35
Q ss_pred hhcccccccccc---cCChh-HHHHHHHhCCceecccccc--cchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHh
Q 012587 340 VLAHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 340 il~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
+++.+++ +|. +-|.| +.+||+++|+|.|+....+ |.-.+...-. .-+.|..+ ..-++++|.+++.++++
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~-~~~~G~lv-~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPED-GEATGFVF-DDFNAEDLLRALRRALE 427 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCC-CCCceEEe-CCCCHHHHHHHHHHHHH
Confidence 7888887 553 34554 8899999999999875432 3221111111 22678887 45688999999999886
No 89
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.46 E-value=0.00015 Score=69.72 Aligned_cols=195 Identities=13% Similarity=0.076 Sum_probs=104.7
Q ss_pred hhcCCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhh---C
Q 012587 219 RNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVH---S 295 (460)
Q Consensus 219 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~---~ 295 (460)
.. ..-++.+||-.....-... ..+....+.+ -..++++|.+-.||-...=...+..+.++.+. .
T Consensus 149 ~~-~g~~~~~VGHPl~d~~~~~-----------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~ 215 (373)
T PF02684_consen 149 KK-HGVPVTYVGHPLLDEVKPE-----------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQ 215 (373)
T ss_pred hc-cCCCeEEECCcchhhhccC-----------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44 4467999995443322111 1122222232 23478999999998763323334444444443 2
Q ss_pred --CCcEEEEEccCCCCCCCCCCCCchHHHH---HhcCCceee-eecChHhhhcccccccccccCChhHHHHHHHhCCcee
Q 012587 296 --KKSFLWVIRPDLISGKDGENQIPEELLE---ATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMI 369 (460)
Q Consensus 296 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~n~~~~-~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l 369 (460)
+.++++..... .....+.+ ....++.+. ..-.-.++|..+++ ++++.| ..++|+..+|+|||
T Consensus 216 ~p~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~-al~~SG--TaTLE~Al~g~P~V 283 (373)
T PF02684_consen 216 RPDLQFVVPVAPE---------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA-ALAASG--TATLEAALLGVPMV 283 (373)
T ss_pred CCCeEEEEecCCH---------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc-hhhcCC--HHHHHHHHhCCCEE
Confidence 44555554211 11111111 112233333 22245678888887 455554 46889999999999
Q ss_pred cccccc-cchhhHHHHHhhhc------------eeeee-cCCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhc
Q 012587 370 CWPSFA-DQQINSRFVGEVWK------------LGLDI-KDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNK 435 (460)
Q Consensus 370 ~~P~~~-DQ~~na~~~~e~~G------------~g~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~ 435 (460)
++=-.. =-...|+++. +.. +-..+ ++++|++.|.+++.++|+| +..++......+.+++..+.
T Consensus 284 v~Yk~~~lt~~iak~lv-k~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~ 360 (373)
T PF02684_consen 284 VAYKVSPLTYFIAKRLV-KVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN--PEKRKKQKELFREIRQLLGP 360 (373)
T ss_pred EEEcCcHHHHHHHHHhh-cCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhhhh
Confidence 874221 1223344442 211 11111 2489999999999999998 65565555666666665444
Q ss_pred CCChHH
Q 012587 436 GGSSYC 441 (460)
Q Consensus 436 ~g~~~~ 441 (460)
|.++..
T Consensus 361 ~~~~~~ 366 (373)
T PF02684_consen 361 GASSRA 366 (373)
T ss_pred ccCCHH
Confidence 555443
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.45 E-value=0.00019 Score=70.25 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=57.7
Q ss_pred CCceeeeecC-hHhhhccccccccc--cc--CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchH
Q 012587 327 ERGCIAGWVP-QEEVLAHSAVGGFL--TH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 401 (460)
Q Consensus 327 ~n~~~~~~vp-~~~il~~~~~~~~I--~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~ 401 (460)
+++.+.++.. -..++..+++ +| ++ |-..++.||+++|+|+|+.... .+...+ +.-..|..+ ..-+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~-~~~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALV-PPGDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEe-CCCCHH
Confidence 4555555544 3788889998 55 33 3357999999999999997643 344455 343457666 446789
Q ss_pred HHHHHHHHHHhHhHHHHH
Q 012587 402 IVEKAVNDLMVERKEEFM 419 (460)
Q Consensus 402 ~l~~~i~~~l~~~~~~~~ 419 (460)
++.+++.+++++ +..+
T Consensus 327 ~la~~i~~l~~~--~~~~ 342 (374)
T TIGR03088 327 ALARALQPYVSD--PAAR 342 (374)
T ss_pred HHHHHHHHHHhC--HHHH
Confidence 999999999986 5433
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.42 E-value=6.9e-05 Score=72.55 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=61.8
Q ss_pred hcCCceeeeecChH---hhhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCC
Q 012587 325 TKERGCIAGWVPQE---EVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 397 (460)
Q Consensus 325 ~~~n~~~~~~vp~~---~il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~ 397 (460)
..+|+.+.+++|+. .++..+++ +|.- |...++.||+++|+|+|+.... .....+ .. .|..+ ..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~--~~~~~-~~ 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GD--AALYF-DP 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cC--ceeee-CC
Confidence 45688888999875 56778887 4432 3346899999999999986542 122223 23 34444 33
Q ss_pred cchHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 012587 398 CDRNIVEKAVNDLMVERKEEFMESADRMANL 428 (460)
Q Consensus 398 ~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~ 428 (460)
.+.+++.+++.++++| +..+.+..+-+..
T Consensus 321 ~~~~~~~~~i~~l~~~--~~~~~~~~~~~~~ 349 (365)
T cd03809 321 LDPEALAAAIERLLED--PALREELRERGLA 349 (365)
T ss_pred CCHHHHHHHHHHHhcC--HHHHHHHHHHHHH
Confidence 4889999999999987 7766655554443
No 92
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.42 E-value=0.00038 Score=70.19 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=91.1
Q ss_pred hhcCCCceeEeCccccccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHh--hC-
Q 012587 219 RNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLV--HS- 295 (460)
Q Consensus 219 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~--~~- 295 (460)
+. ..-++.+||-...+.-... ...++..+-+...+++++|-+-.||-...=...+..+.++.+ .+
T Consensus 377 ~~-~gv~v~yVGHPL~d~i~~~-----------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~ 444 (608)
T PRK01021 377 KD-SPLRTVYLGHPLVETISSF-----------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA 444 (608)
T ss_pred Hh-cCCCeEEECCcHHhhcccC-----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 44 5578999995443322100 112222222332346799999999876433344555666665 33
Q ss_pred -CCcEEEEEccCCCCCCCCCCCCchHHHHHhc-CC---ceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceec
Q 012587 296 -KKSFLWVIRPDLISGKDGENQIPEELLEATK-ER---GCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMIC 370 (460)
Q Consensus 296 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~n---~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~ 370 (460)
+.++++..... ...+.+.+... .+ +.++.--...++++.|++ .+.-.|. .++|+..+|+|||+
T Consensus 445 ~~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV 512 (608)
T PRK01021 445 STHQLLVSSANP---------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIV 512 (608)
T ss_pred cCeEEEEecCch---------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEE
Confidence 34555543211 11112222121 12 122211012688988997 5555543 57899999999998
Q ss_pred ccccc-cchhhHHHHHhh--------------hceeeeec---CCcchHHHHHHHHHHHhHhHHHHHHHHH
Q 012587 371 WPSFA-DQQINSRFVGEV--------------WKLGLDIK---DLCDRNIVEKAVNDLMVERKEEFMESAD 423 (460)
Q Consensus 371 ~P~~~-DQ~~na~~~~e~--------------~G~g~~~~---~~~~~~~l~~~i~~~l~~~~~~~~~~a~ 423 (460)
+=-.. =-..-|+++. + ..+-..+- +++|++.|.+++ ++|.| +..+++.+
T Consensus 513 ~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d--~~~r~~~~ 579 (608)
T PRK01021 513 TCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT--SQSKEKQK 579 (608)
T ss_pred EEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC--HHHHHHHH
Confidence 63211 1122344443 2 11111111 368999999997 77776 54443333
No 93
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=7.9e-05 Score=70.33 Aligned_cols=331 Identities=14% Similarity=0.123 Sum_probs=178.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCC-CeEEEEeCccch--hHHhhccccccccccCCCCceEEecC-CCCCCCC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAG-IKITFLNTEHYY--DRVIRHSSDAFSRYMQIPGFQFKTLT-DGLPRDH 79 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rG-H~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (460)
|+|+||+++ +|++=.++-+-+|.+++.+.+ -+..++.+..++ +..... ++...++ +.+.-..
T Consensus 1 m~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~-------------le~~~i~~pdy~L~i 66 (383)
T COG0381 1 MKMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV-------------LELFGIRKPDYDLNI 66 (383)
T ss_pred CCceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH-------------HHHhCCCCCCcchhc
Confidence 356676654 689999999999999999997 666666554555 222211 2222222 1122222
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEE--cCCcc-hHHHHHHHhCCceEEEecchhHHHHHHhhccccc
Q 012587 80 PRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIIT--DGYMS-RAIDAAREVGVSIIYFRTISACAFWSFHCIPDII 156 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~--D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (460)
....++......... ..+.+++.+. +||+|+. |..+. ++.++|.+.+||+.-+.-.--+.
T Consensus 67 ~~~~~tl~~~t~~~i----~~~~~vl~~~--kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~----------- 129 (383)
T COG0381 67 MKPGQTLGEITGNII----EGLSKVLEEE--KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG----------- 129 (383)
T ss_pred cccCCCHHHHHHHHH----HHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC-----------
Confidence 222344444444443 6678888886 9999985 44433 56899999999998865532100
Q ss_pred cCCCCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCC-ceeEeCccccc
Q 012587 157 DAGELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCP-NIYSIGPLNAH 235 (460)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~-~~~~vG~~~~~ 235 (460)
+.. ..+...+.+.. .-+...+..+-- ..-...+....+ +++.+|-....
T Consensus 130 --------------~~~-------~PEE~NR~l~~-----~~S~~hfapte~----ar~nLl~EG~~~~~IfvtGnt~iD 179 (383)
T COG0381 130 --------------DLY-------FPEEINRRLTS-----HLSDLHFAPTEI----ARKNLLREGVPEKRIFVTGNTVID 179 (383)
T ss_pred --------------CCC-------CcHHHHHHHHH-----HhhhhhcCChHH----HHHHHHHcCCCccceEEeCChHHH
Confidence 000 01111111111 111122222211 111111221223 47777743221
Q ss_pred cccCCCccccCCCCccccchhhhhh-hhcCCCCcEEEEEecCcccCCHHHHHHHHH----HHhhC-CCcEEEEEccCCCC
Q 012587 236 LKVRIPEKTYSSSSLWKIDRSCMAW-LDKQPKQSVIYVSFGSIAVMSRDQLIEFYY----GLVHS-KKSFLWVIRPDLIS 309 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~----al~~~-~~~~i~~~~~~~~~ 309 (460)
.-.. +.+....+.....- +. ..++..|++|+=-..+.. +.++.+.+ .+++. ++.+|..+-.. .
T Consensus 180 al~~-------~~~~~~~~~~~~~~~~~-~~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~--~ 248 (383)
T COG0381 180 ALLN-------TRDRVLEDSKILAKGLD-DKDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR--P 248 (383)
T ss_pred HHHH-------HHhhhccchhhHHhhhc-cccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC--h
Confidence 1100 00000111112211 22 335678999875544444 33444444 44444 44555544211 0
Q ss_pred CCCCCCCCchHHHHHhc--CCceee---eecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHH
Q 012587 310 GKDGENQIPEELLEATK--ERGCIA---GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFV 384 (460)
Q Consensus 310 ~~~~~~~~~~~~~~~~~--~n~~~~---~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~ 384 (460)
.+..-...++. +|+.+. +|.++..++.++-+ ++|-.|. -.-||-..|+|.+++=...++++ ++
T Consensus 249 ------~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v 316 (383)
T COG0381 249 ------RVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV 316 (383)
T ss_pred ------hhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce
Confidence 01110012233 356665 77788999999987 8888763 46799999999999999999986 44
Q ss_pred HhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHH
Q 012587 385 GEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADR 424 (460)
Q Consensus 385 ~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~ 424 (460)
+ .|.-+.+ ..+.+.|.+++.+++++ +++.++-..
T Consensus 317 -~-agt~~lv--g~~~~~i~~~~~~ll~~--~~~~~~m~~ 350 (383)
T COG0381 317 -E-AGTNILV--GTDEENILDAATELLED--EEFYERMSN 350 (383)
T ss_pred -e-cCceEEe--CccHHHHHHHHHHHhhC--hHHHHHHhc
Confidence 3 4655555 25679999999999998 666665444
No 94
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.37 E-value=1.4e-06 Score=69.78 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=73.6
Q ss_pred CcEEEEEecCcccCCHHHH-----HHHHHHHhhCCC-cEEEEEccCCCCCCCCCCCCchHHHH-HhcCCcee--eeecCh
Q 012587 267 QSVIYVSFGSIAVMSRDQL-----IEFYYGLVHSKK-SFLWVIRPDLISGKDGENQIPEELLE-ATKERGCI--AGWVPQ 337 (460)
Q Consensus 267 ~~~V~vs~GS~~~~~~~~~-----~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~~~--~~~vp~ 337 (460)
...+|||-||..- ++++ +...+.+.+.|+ +.|+..+.+... .++.... +..+.+.+ .+|-|-
T Consensus 3 ~~~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 3 LMTVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred ceEEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCcc
Confidence 3579999998761 2222 234566667775 567777654211 1111110 12233333 477884
Q ss_pred -HhhhcccccccccccCChhHHHHHHHhCCceecccc----cccchhhHHHHHhhhc
Q 012587 338 -EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS----FADQQINSRFVGEVWK 389 (460)
Q Consensus 338 -~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~~~e~~G 389 (460)
.+..+.+++ +|+|+|.||++|.|..|+|.++++. ...|.+-|..++ +.|
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~eg 127 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEG 127 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcC
Confidence 666667887 9999999999999999999999995 357999998885 434
No 95
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.36 E-value=0.0059 Score=64.20 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=50.1
Q ss_pred cCCceeeeec-Ch---Hhhhcc----cccccccc---cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeee
Q 012587 326 KERGCIAGWV-PQ---EEVLAH----SAVGGFLT---HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD 393 (460)
Q Consensus 326 ~~n~~~~~~v-p~---~~il~~----~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~ 393 (460)
.+++.+.++. +. .+++.. +++ ||. .=|. -++.||+++|+|+|+.-..+ ....+ +.-..|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEE
Confidence 3577777664 32 234432 234 653 2333 59999999999999875442 44455 34345777
Q ss_pred ecCCcchHHHHHHHHHHH
Q 012587 394 IKDLCDRNIVEKAVNDLM 411 (460)
Q Consensus 394 ~~~~~~~~~l~~~i~~~l 411 (460)
+ ...+.++++++|.+++
T Consensus 691 V-dp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 I-DPYHGEEAAEKIVDFF 707 (784)
T ss_pred e-CCCCHHHHHHHHHHHH
Confidence 7 4457888999988876
No 96
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.35 E-value=0.00016 Score=70.28 Aligned_cols=318 Identities=11% Similarity=0.072 Sum_probs=160.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCccchhH-----HhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFLNTEHYYDR-----VIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
|||+++ .|++-.+.=+.+|.++|.+. +.++.++.+...++. ..... ..++... + ...-...
T Consensus 1 ~ki~~v-~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~---------~~~~~~~--~-~~~~~~~ 67 (365)
T TIGR03568 1 KKICVV-TGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIE---------KDGFDID--E-KIEILLD 67 (365)
T ss_pred CeEEEE-EecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHH---------HcCCCCC--C-ccccccC
Confidence 366544 57777888888888889874 788888877554421 11110 0011111 1 0110000
Q ss_pred -CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcC--Ccc-hHHHHHHHhCCceEEEecchhHHHHHHhhccccc
Q 012587 81 -RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDG--YMS-RAIDAAREVGVSIIYFRTISACAFWSFHCIPDII 156 (460)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~--~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (460)
....+....+.. ....+.+++++. +||+|+.-. +.. ++..+|..+|||++-+.-.-...
T Consensus 68 ~~~~~~~~~~~~~----~~~~~~~~~~~~--~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~----------- 130 (365)
T TIGR03568 68 SDSNAGMAKSMGL----TIIGFSDAFERL--KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTE----------- 130 (365)
T ss_pred CCCCCCHHHHHHH----HHHHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCC-----------
Confidence 011222333322 335667788886 999998654 322 68999999999999765431100
Q ss_pred cCCCCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHH-hhcC-CCceeEeCcccc
Q 012587 157 DAGELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQI-RNHS-CPNIYSIGPLNA 234 (460)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~-~~~~-~~~~~~vG~~~~ 234 (460)
+ ..+...+...... ++..+..+. ...+.. +... ..+++.+|-...
T Consensus 131 --------------~---------~~eE~~r~~i~~l-----a~l~f~~t~-----~~~~~L~~eg~~~~~i~~tG~~~i 177 (365)
T TIGR03568 131 --------------G---------AIDESIRHAITKL-----SHLHFVATE-----EYRQRVIQMGEDPDRVFNVGSPGL 177 (365)
T ss_pred --------------C---------CchHHHHHHHHHH-----HhhccCCCH-----HHHHHHHHcCCCCCcEEEECCcHH
Confidence 0 0001111111111 111111111 111111 1101 134666775432
Q ss_pred ccccCCCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcc--c-CCHHHHHHHHHHHhhCCCcEEEEEccCCCCCC
Q 012587 235 HLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIA--V-MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGK 311 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 311 (460)
..-.... ....+++.+.+.-..+++.|+|++=... + ...+.+..+++++...+.++++....+. .
T Consensus 178 D~l~~~~---------~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p-- 245 (365)
T TIGR03568 178 DNILSLD---------LLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-A-- 245 (365)
T ss_pred HHHHhhh---------ccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-C--
Confidence 2111000 0012223333321224578878775432 3 3356788899999887766655543210 0
Q ss_pred CCCCCCchHHHHHh--cCCceeeeecC---hHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHh
Q 012587 312 DGENQIPEELLEAT--KERGCIAGWVP---QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGE 386 (460)
Q Consensus 312 ~~~~~~~~~~~~~~--~~n~~~~~~vp---~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e 386 (460)
+. ..+...+.+.. .+|+.+.+.++ ...++.++++ +|+-++.|- .||.+.|+|.|.+- +.+ .-+ +
T Consensus 246 ~~-~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~ 314 (365)
T TIGR03568 246 GS-RIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L 314 (365)
T ss_pred Cc-hHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h
Confidence 00 01111122211 35788876555 5667889997 998875555 99999999999774 211 112 2
Q ss_pred hhceeeeecCCcchHHHHHHHHHHHh
Q 012587 387 VWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 387 ~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
.|..+.+ =..+.++|.+++.++++
T Consensus 315 -~g~nvl~-vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 315 -RADSVID-VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred -hcCeEEE-eCCCHHHHHHHHHHHhC
Confidence 2433331 14678999999999654
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.0033 Score=65.81 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=62.6
Q ss_pred cCCceeeeecCh-Hhhhcccccccccc---cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec-CCcc
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLT---HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCD 399 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~-~~~~ 399 (460)
.+++.+.+|.++ ..++..+++ +|. +.|. +++.||+++|+|+|+.... .....+ +.-..|..++ .+.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCCCCC
Confidence 467888888875 778888887 553 4554 7999999999999997643 244455 3434687776 4556
Q ss_pred hHHHHHHHHHHHh----HhHHHHHHHHHHHH
Q 012587 400 RNIVEKAVNDLMV----ERKEEFMESADRMA 426 (460)
Q Consensus 400 ~~~l~~~i~~~l~----~~~~~~~~~a~~l~ 426 (460)
.+++.+++.+++. + +.+++++++..
T Consensus 646 ~~~La~aL~~ll~~l~~~--~~l~~~ar~~a 674 (694)
T PRK15179 646 APDVAEALARIHDMCAAD--PGIARKAADWA 674 (694)
T ss_pred hHHHHHHHHHHHhChhcc--HHHHHHHHHHH
Confidence 6666666666554 4 66666665443
No 98
>PLN00142 sucrose synthase
Probab=98.30 E-value=0.00031 Score=73.57 Aligned_cols=87 Identities=11% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCceeee----ecChHhhhc----ccccccccc---cCChh-HHHHHHHhCCceecccccccchhhHHHHHhhhceeeee
Q 012587 327 ERGCIAG----WVPQEEVLA----HSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 394 (460)
Q Consensus 327 ~n~~~~~----~vp~~~il~----~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~ 394 (460)
+++.+.+ ..+..++.. .+++ ||. +-|.| ++.||+++|+|+|+....+ ....+ +.-..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV-~dG~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEII-VDGVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEe
Confidence 4555543 333344543 2344 554 34554 8999999999999875433 44455 343457777
Q ss_pred cCCcchHHHHHHHHHHH----hHhHHHHHHHHH
Q 012587 395 KDLCDRNIVEKAVNDLM----VERKEEFMESAD 423 (460)
Q Consensus 395 ~~~~~~~~l~~~i~~~l----~~~~~~~~~~a~ 423 (460)
...+.+++.++|.+++ +| +..+++..
T Consensus 715 -~P~D~eaLA~aI~~lLekLl~D--p~lr~~mg 744 (815)
T PLN00142 715 -DPYHGDEAANKIADFFEKCKED--PSYWNKIS 744 (815)
T ss_pred -CCCCHHHHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 4457778877776654 55 55554433
No 99
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.29 E-value=0.00014 Score=71.82 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=60.6
Q ss_pred cCCceeeeecCh-Hhhhccccccccc--cc--CCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcc
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFL--TH--CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 399 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I--~H--GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~ 399 (460)
.+++.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+. +.+..|.|..+. .+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv~--~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLVA--AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEeC--CC
Confidence 467888899985 677888888 54 32 455 4699999999999998754322 111236676663 58
Q ss_pred hHHHHHHHHHHHhHhHHHHHHH
Q 012587 400 RNIVEKAVNDLMVERKEEFMES 421 (460)
Q Consensus 400 ~~~l~~~i~~~l~~~~~~~~~~ 421 (460)
.+++.++|.++++| +..+++
T Consensus 349 ~~~la~ai~~ll~~--~~~~~~ 368 (397)
T TIGR03087 349 PADFAAAILALLAN--PAEREE 368 (397)
T ss_pred HHHHHHHHHHHHcC--HHHHHH
Confidence 99999999999997 654433
No 100
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.29 E-value=0.0015 Score=63.87 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=55.1
Q ss_pred cCCceeeeec--Ch---HhhhcccccccccccC---C-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecC
Q 012587 326 KERGCIAGWV--PQ---EEVLAHSAVGGFLTHC---G-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 396 (460)
Q Consensus 326 ~~n~~~~~~v--p~---~~il~~~~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~ 396 (460)
.+++.+.++. ++ ..+++.+++ ++.-. | ..++.||+++|+|+|+....+ ....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC-
Confidence 3567777776 43 356788887 66432 2 349999999999999876432 23344 3434566553
Q ss_pred CcchHHHHHHHHHHHhHhHHHHHHH
Q 012587 397 LCDRNIVEKAVNDLMVERKEEFMES 421 (460)
Q Consensus 397 ~~~~~~l~~~i~~~l~~~~~~~~~~ 421 (460)
+.+.+..++.+++++ ++.++.
T Consensus 323 --~~~~~a~~i~~ll~~--~~~~~~ 343 (372)
T cd03792 323 --TVEEAAVRILYLLRD--PELRRK 343 (372)
T ss_pred --CcHHHHHHHHHHHcC--HHHHHH
Confidence 456778899999986 555443
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.27 E-value=8.7e-06 Score=78.27 Aligned_cols=255 Identities=12% Similarity=0.112 Sum_probs=127.6
Q ss_pred CcHHHHHHHHcCCCCccEEEE--cCCcc-hHHHHHHHhCCceEEEecchhHHHHHHhhccccccCCCCCCCCCccCCCCC
Q 012587 97 TPPLLKEMVSDSKSPVNCIIT--DGYMS-RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGFLRCRDLP 173 (460)
Q Consensus 97 ~~~~l~~~~~~~~~~pD~vv~--D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 173 (460)
....+.+++... +||+|+. |.+.. ++..+|..++||++-+.-..- . .+. .
T Consensus 55 ~~~~~~~~~~~~--~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlR-s-------~d~-----------------~ 107 (346)
T PF02350_consen 55 AIIELADVLERE--KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLR-S-------GDR-----------------T 107 (346)
T ss_dssp HHHHHHHHHHHH--T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-------------S-T-----------------T
T ss_pred HHHHHHHHHHhc--CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCC-c-------ccc-----------------C
Confidence 346677888886 9999874 54433 679999999999776544311 0 000 0
Q ss_pred CcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhh-c-CCCceeEeCccccccccCCCccccCCCCcc
Q 012587 174 SFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRN-H-SCPNIYSIGPLNAHLKVRIPEKTYSSSSLW 251 (460)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~-~-~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~ 251 (460)
. ...+...+... . .-+...+..+-.. ...+.. . ...+++.+|......-....+
T Consensus 108 ~-----g~~de~~R~~i---~--~la~lhf~~t~~~-----~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~--------- 163 (346)
T PF02350_consen 108 E-----GMPDEINRHAI---D--KLAHLHFAPTEEA-----RERLLQEGEPPERIFVVGNPGIDALLQNKE--------- 163 (346)
T ss_dssp S-----STTHHHHHHHH---H--HH-SEEEESSHHH-----HHHHHHTT--GGGEEE---HHHHHHHHHHH---------
T ss_pred C-----CCchhhhhhhh---h--hhhhhhccCCHHH-----HHHHHhcCCCCCeEEEEChHHHHHHHHhHH---------
Confidence 0 00111222222 2 3345555555332 111122 0 124689999654332110000
Q ss_pred ccchhh--hhhhhcCCCCcEEEEEecCcccCC-H---HHHHHHHHHHhhC-CCcEEEEEccCCCCCCCCCCCCchHHHHH
Q 012587 252 KIDRSC--MAWLDKQPKQSVIYVSFGSIAVMS-R---DQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGENQIPEELLEA 324 (460)
Q Consensus 252 ~~~~~l--~~~l~~~~~~~~V~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 324 (460)
...+++ .+++. ..+++.|+|++=...+.. + ..+..+++++.+. ++++||.+... +.....+.+.
T Consensus 164 ~~~~~~~~~~i~~-~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~--------p~~~~~i~~~ 234 (346)
T PF02350_consen 164 EIEEKYKNSGILQ-DAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN--------PRGSDIIIEK 234 (346)
T ss_dssp TTCC-HHHHHHHH-CTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S---------HHHHHHHHHH
T ss_pred HHhhhhhhHHHHh-ccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC--------chHHHHHHHH
Confidence 001111 12222 357899999985555544 3 3455556666655 67888887421 0111222222
Q ss_pred hc--CCceeeeecC---hHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcc
Q 012587 325 TK--ERGCIAGWVP---QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 399 (460)
Q Consensus 325 ~~--~n~~~~~~vp---~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~ 399 (460)
.. +|+.++..++ +..+|.++++ +|+..| |-.-||.++|+|.|.+ .|+-..=.-+ + .|..+.+ + .+
T Consensus 235 l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r-~-~~~nvlv-~-~~ 304 (346)
T PF02350_consen 235 LKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGR-E-RGSNVLV-G-TD 304 (346)
T ss_dssp HTT-TTEEEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHH-H-TTSEEEE-T-SS
T ss_pred hcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHH-h-hcceEEe-C-CC
Confidence 21 4888886665 5777889997 999999 4444999999999999 2222222222 2 3555554 3 78
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHH
Q 012587 400 RNIVEKAVNDLMVERKEEFMESAD 423 (460)
Q Consensus 400 ~~~l~~~i~~~l~~~~~~~~~~a~ 423 (460)
.++|.+++.+++++ ....++.+
T Consensus 305 ~~~I~~ai~~~l~~--~~~~~~~~ 326 (346)
T PF02350_consen 305 PEAIIQAIEKALSD--KDFYRKLK 326 (346)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhC--hHHHHhhc
Confidence 99999999999985 44444443
No 102
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.24 E-value=0.0018 Score=65.63 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=75.0
Q ss_pred cEEEEEecCccc-CCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHH---HHhcCCceeeeecChH---hh
Q 012587 268 SVIYVSFGSIAV-MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL---EATKERGCIAGWVPQE---EV 340 (460)
Q Consensus 268 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~~~~~~vp~~---~i 340 (460)
..+++..|.+.. ...+.+...+..+.+.+.++++.-. |.+ ...+.+. ++.+.++.+....+.. .+
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~-------g~~-~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGT-------GDP-ELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECC-------CCH-HHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 445566777763 2334444444444334566655432 110 1112222 2334566666555543 57
Q ss_pred hcccccccccc---cCChh-HHHHHHHhCCceecccccc--cchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHh
Q 012587 341 LAHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 341 l~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
++.+++ +|. +-|.| +.+||+++|+|.|+....+ |.-.+...-. .-+.|..+ ...++++|.++|.++++
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~-~~~~G~l~-~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEA-ESGTGFLF-EEYDPGALLAALSRALR 436 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCC-CCCceEEe-CCCCHHHHHHHHHHHHH
Confidence 888887 553 23444 7899999999999876532 3221111000 12678777 55688999999999987
No 103
>PLN02316 synthase/transferase
Probab=98.15 E-value=0.011 Score=63.95 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=66.2
Q ss_pred cCCceeeeecChH---hhhccccccccccc---CCh-hHHHHHHHhCCceecccccc--cchhhH----HHHH--hhhce
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLTH---CGW-NSTLESIVAGMPMICWPSFA--DQQINS----RFVG--EVWKL 390 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~--DQ~~na----~~~~--e~~G~ 390 (460)
++++.+....+.. .+++.+++ |+.- =|+ -+.+||+++|+|.|+....+ |.-... .+.. ..-+.
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3466665444542 58888887 6642 233 58999999999988865532 322211 0100 01246
Q ss_pred eeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012587 391 GLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 450 (460)
Q Consensus 391 g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 450 (460)
|..+ ...+++.|..+|.++|++ |.+..+.+++..++.+... -+++...+-...|
T Consensus 977 Gflf-~~~d~~aLa~AL~raL~~----~~~~~~~~~~~~r~~m~~d-FSW~~~A~~Y~~L 1030 (1036)
T PLN02316 977 GFSF-DGADAAGVDYALNRAISA----WYDGRDWFNSLCKRVMEQD-WSWNRPALDYMEL 1030 (1036)
T ss_pred eEEe-CCCCHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 7777 567899999999999974 3333334444444433223 3344433333333
No 104
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.11 E-value=0.0024 Score=64.80 Aligned_cols=135 Identities=13% Similarity=0.046 Sum_probs=75.4
Q ss_pred CcEEEEEecCcccC-CHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHH---HHhcCCceeeeecCh---Hh
Q 012587 267 QSVIYVSFGSIAVM-SRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL---EATKERGCIAGWVPQ---EE 339 (460)
Q Consensus 267 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~~~~~~vp~---~~ 339 (460)
+..+++..|.+... ..+.+...+..+.+.+.++++.-. |. ......+. ++.++|+.+....++ ..
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~-------g~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGS-------GD-PEYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEec-------CC-HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 34456777777632 234444444444444566655532 11 01112222 122467776533343 34
Q ss_pred hhccccccccccc---CCh-hHHHHHHHhCCceecccccc--cchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhH
Q 012587 340 VLAHSAVGGFLTH---CGW-NSTLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 340 il~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~ 413 (460)
+++.+++ ++.- -|. -+.+||+++|+|.|+....+ |--.+.... .+-|.|..+ ...+.++|.+++.++++.
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~-~~~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVF-EGYNADALLAALRRALAL 442 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEe-CCCCHHHHHHHHHHHHHH
Confidence 6788887 5532 233 47899999999999876532 322222111 123578888 456789999999999863
No 105
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=0.0019 Score=61.09 Aligned_cols=348 Identities=15% Similarity=0.138 Sum_probs=171.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
|+||++++.=..||+.-. .|.++|++|=-+|.|++-.. ++..+.+- .++ ++.... ...+
T Consensus 1 ~~ki~i~AGE~SGDllGa-~LikaLk~~~~~~efvGvgG--~~m~aeG~--------------~sl---~~~~el-svmG 59 (381)
T COG0763 1 MLKIALSAGEASGDLLGA-GLIKALKARYPDVEFVGVGG--EKMEAEGL--------------ESL---FDMEEL-SVMG 59 (381)
T ss_pred CceEEEEecccchhhHHH-HHHHHHHhhCCCeEEEEecc--HHHHhccC--------------ccc---cCHHHH-HHhh
Confidence 579999999999998754 57788888722777776422 22222210 000 011000 1223
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcC-CCCccEEE-EcCCcc--hHHHHHHHhC--CceEEEecchhHHHHHHhhccccccCC
Q 012587 86 FPELVDSLNCATPPLLKEMVSDS-KSPVNCII-TDGYMS--RAIDAAREVG--VSIIYFRTISACAFWSFHCIPDIIDAG 159 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~-~~~pD~vv-~D~~~~--~~~~~A~~lg--iP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
+.+.+..+.. .....+++++.+ ..+||++| .|.-.+ ....-.++.| ||.|.+..- ++|..
T Consensus 60 f~EVL~~lp~-llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~P---------sVWAW---- 125 (381)
T COG0763 60 FVEVLGRLPR-LLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSP---------SVWAW---- 125 (381)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECc---------ceeee----
Confidence 3333333332 112223333322 23999987 665433 3444455667 898875442 22221
Q ss_pred CCCCCCCccCCCCCCcccCCCCCChHHHHHHHHhhhhcCCCEEEEcChhhhchhHHHHHhhcCCCceeEeCccccccccC
Q 012587 160 ELPIKGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVR 239 (460)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~p~~~~~~~~~~~~~~~vG~~~~~~~~~ 239 (460)
......... ...+.++.--. +|++.. .. ..-+..|||--....-.-
T Consensus 126 ----------------------r~~Ra~~i~------~~~D~lLailP--FE~~~y---~k-~g~~~~yVGHpl~d~i~~ 171 (381)
T COG0763 126 ----------------------RPKRAVKIA------KYVDHLLAILP--FEPAFY---DK-FGLPCTYVGHPLADEIPL 171 (381)
T ss_pred ----------------------chhhHHHHH------HHhhHeeeecC--CCHHHH---Hh-cCCCeEEeCChhhhhccc
Confidence 000111111 22222222221 233333 33 333489999544322211
Q ss_pred CCccccCCCCccccchhhhhhhhcCCCCcEEEEEecCcccCCHHHHHHHHHHHhhC-----CCcEEEEEccCCCCCCCCC
Q 012587 240 IPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWVIRPDLISGKDGE 314 (460)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~ 314 (460)
. ...+...+-+....+++++.+-.||-...=...+..+.++...+ +.++++-+.....
T Consensus 172 ~-----------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~------ 234 (381)
T COG0763 172 L-----------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY------ 234 (381)
T ss_pred c-----------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH------
Confidence 1 12222333343345789999999997643333344444444433 4566666532100
Q ss_pred CCCchHHHHHhcCCc-eeeeecC---hHhhhcccccccccccCChhHHHHHHHhCCceecccccc-cchhhHHHHHhhhc
Q 012587 315 NQIPEELLEATKERG-CIAGWVP---QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFA-DQQINSRFVGEVWK 389 (460)
Q Consensus 315 ~~~~~~~~~~~~~n~-~~~~~vp---~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~-DQ~~na~~~~e~~G 389 (460)
+.+.. +....+. ...-++. -...+..|++ ++++. | .-+.|+..+|+|||+.=-.. =-..-++++. +..
T Consensus 235 ~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~aD~-al~aS-G-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~ 307 (381)
T COG0763 235 RRIIE---EALKWEVAGLSLILIDGEKRKAFAAADA-ALAAS-G-TATLEAALAGTPMVVAYKVKPITYFIAKRLV-KLP 307 (381)
T ss_pred HHHHH---HHhhccccCceEEecCchHHHHHHHhhH-HHHhc-c-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCC
Confidence 00111 1111111 1222222 2446777776 34444 4 34789999999999862110 0111223322 111
Q ss_pred ------------eeeee-cCCcchHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012587 390 ------------LGLDI-KDLCDRNIVEKAVNDLMVER--KEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 450 (460)
Q Consensus 390 ------------~g~~~-~~~~~~~~l~~~i~~~l~~~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 450 (460)
+...+ +++++++.|.+++..++.|. ...+++...++.+.++. ++.+..+++.+++.+
T Consensus 308 yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~ 379 (381)
T COG0763 308 YVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELL 379 (381)
T ss_pred cccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHh
Confidence 11111 14799999999999999971 12456666666666665 556677777777665
No 106
>PLN02949 transferase, transferring glycosyl groups
Probab=98.04 E-value=0.017 Score=57.97 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=52.1
Q ss_pred cCCceeeeecChHh---hhcccccccccc---cCChh-HHHHHHHhCCceecccccccchhhHHHHHh-hhc-eeeeecC
Q 012587 326 KERGCIAGWVPQEE---VLAHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFADQQINSRFVGE-VWK-LGLDIKD 396 (460)
Q Consensus 326 ~~n~~~~~~vp~~~---il~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e-~~G-~g~~~~~ 396 (460)
.+++.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|.|+....+--. ..+.+ ..| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 56888889998654 5777886 553 23444 7999999999999987543100 01101 002 34333
Q ss_pred CcchHHHHHHHHHHHh
Q 012587 397 LCDRNIVEKAVNDLMV 412 (460)
Q Consensus 397 ~~~~~~l~~~i~~~l~ 412 (460)
-+.+++++++.++++
T Consensus 407 -~~~~~la~ai~~ll~ 421 (463)
T PLN02949 407 -TTVEEYADAILEVLR 421 (463)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 288999999999997
No 107
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.87 E-value=0.037 Score=55.05 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=54.0
Q ss_pred cCCceeeeecChH---hhhccccccccccc---CCh-hHHHHHHHhCCceecccccccchhhHHHHHh---hhceeeeec
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLTH---CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGE---VWKLGLDIK 395 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e---~~G~g~~~~ 395 (460)
.+++.+.+++|+. .+|..+++ +|+- -|. -++.||+++|+|.|+.-..+.- ...+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe-
Confidence 4688888999864 56778887 5532 222 4889999999999986533211 1112 2 23467665
Q ss_pred CCcchHHHHHHHHHHHhH
Q 012587 396 DLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 396 ~~~~~~~l~~~i~~~l~~ 413 (460)
. +++++.+++.+++++
T Consensus 377 ~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 S--TAEEYAEAIEKILSL 392 (419)
T ss_pred C--CHHHHHHHHHHHHhC
Confidence 2 899999999999984
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.84 E-value=0.031 Score=54.64 Aligned_cols=78 Identities=21% Similarity=0.113 Sum_probs=51.8
Q ss_pred cCCceeeeecChHh---hhccccccccc------ccCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec
Q 012587 326 KERGCIAGWVPQEE---VLAHSAVGGFL------THCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK 395 (460)
Q Consensus 326 ~~n~~~~~~vp~~~---il~~~~~~~~I------~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~ 395 (460)
.+|+.+.+++|+.+ .+.++++.++- +.++. ..+.|++++|+|+|..+. ...+ +..+.+...
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~- 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLI- 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEe-
Confidence 37999999999654 57788873321 22333 458999999999998752 2222 222323333
Q ss_pred CCcchHHHHHHHHHHHhH
Q 012587 396 DLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 396 ~~~~~~~l~~~i~~~l~~ 413 (460)
. -+.+++.++|.+++.+
T Consensus 324 ~-~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 324 A-DDPEEFVAAIEKALLE 340 (373)
T ss_pred C-CCHHHHHHHHHHHHhc
Confidence 2 3899999999998763
No 109
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00023 Score=56.18 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=67.0
Q ss_pred EEEEecCcccCCHHHHHH--HHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeec--C-hHhhhccc
Q 012587 270 IYVSFGSIAVMSRDQLIE--FYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWV--P-QEEVLAHS 344 (460)
Q Consensus 270 V~vs~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~v--p-~~~il~~~ 344 (460)
||||-||....=...+.. +..-.+....++|+..+.+ +..|- . ..++.+|. + ...+...+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~--------d~kpv------a-gl~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG--------DIKPV------A-GLRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC--------Ccccc------c-ccEEEeechHHHHHHHhhcc
Confidence 789999884221122222 2222223345788888532 12231 1 13455443 4 45666666
Q ss_pred ccccccccCChhHHHHHHHhCCceecccccc--------cchhhHHHHHhhhceeeee
Q 012587 345 AVGGFLTHCGWNSTLESIVAGMPMICWPSFA--------DQQINSRFVGEVWKLGLDI 394 (460)
Q Consensus 345 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~~~~e~~G~g~~~ 394 (460)
++ +|+|+|.||+..++..++|.+++|-.. .|-.-|..++ +.+.=...
T Consensus 67 rI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~ 121 (161)
T COG5017 67 RI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVAC 121 (161)
T ss_pred eE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEE
Confidence 66 999999999999999999999999754 4777777775 45554444
No 110
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.73 E-value=0.021 Score=57.79 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred cCCceeeeecChHhhhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhh-----c-eeeeec
Q 012587 326 KERGCIAGWVPQEEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVW-----K-LGLDIK 395 (460)
Q Consensus 326 ~~n~~~~~~vp~~~il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~-----G-~g~~~~ 395 (460)
.+|+.+.+...-..+++.+++ +|.- |--.++.||+++|+|+|+... ......+ +.. | .|..+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv- 424 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVV- 424 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEE-
Confidence 468888886666888888887 4432 334689999999999998543 3333444 331 2 56666
Q ss_pred CCcchHHHHHHHHHHHhHhHHHHHHHH
Q 012587 396 DLCDRNIVEKAVNDLMVERKEEFMESA 422 (460)
Q Consensus 396 ~~~~~~~l~~~i~~~l~~~~~~~~~~a 422 (460)
...+.+++.+++.++++| +..+++.
T Consensus 425 ~~~d~~~la~ai~~ll~~--~~~~~~~ 449 (475)
T cd03813 425 PPADPEALARAILRLLKD--PELRRAM 449 (475)
T ss_pred CCCCHHHHHHHHHHHhcC--HHHHHHH
Confidence 556899999999999997 6554443
No 111
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.69 E-value=0.0025 Score=62.48 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=61.3
Q ss_pred hcCCceeeeecChH---hhhccccccccccc----CCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecC
Q 012587 325 TKERGCIAGWVPQE---EVLAHSAVGGFLTH----CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 396 (460)
Q Consensus 325 ~~~n~~~~~~vp~~---~il~~~~~~~~I~H----GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~ 396 (460)
...++.+.+++|+. .+++.+++ +|.- .|. .++.||+++|+|+|+.... .+...+ +.-..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeC
Confidence 45678888999864 45888888 5532 443 5788999999999997653 234445 34346765545
Q ss_pred CcchHHHHHHHHHHHhHhHHHHH
Q 012587 397 LCDRNIVEKAVNDLMVERKEEFM 419 (460)
Q Consensus 397 ~~~~~~l~~~i~~~l~~~~~~~~ 419 (460)
..+.+++.++|.++++| +..+
T Consensus 328 ~~d~~~la~~I~~ll~d--~~~~ 348 (380)
T PRK15484 328 PMTSDSIISDINRTLAD--PELT 348 (380)
T ss_pred CCCHHHHHHHHHHHHcC--HHHH
Confidence 56899999999999997 6543
No 112
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.67 E-value=0.00026 Score=68.62 Aligned_cols=135 Identities=14% Similarity=0.085 Sum_probs=86.7
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChH---hhhccccc
Q 012587 270 IYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQE---EVLAHSAV 346 (460)
Q Consensus 270 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~---~il~~~~~ 346 (460)
.++..|++.. ......++++++.++.+++++-.+ ...+.+.+...+|+.+.+++|+. .++..+++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g----------~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDG----------PELDRLRAKAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECC----------hhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 3456677652 233566777778777776665421 11123333456899999999974 56788887
Q ss_pred ccccccCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHH-HHHHHHHH
Q 012587 347 GGFLTHCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKE-EFMESADR 424 (460)
Q Consensus 347 ~~~I~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~-~~~~~a~~ 424 (460)
-++-+.-|. -++.||+++|+|+|+....+ ....+ +..+.|..+ ..-+.+.+.++|.++++| + ..++++++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~-~~~~~~~la~~i~~l~~~--~~~~~~~~~~ 336 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILF-EEQTVESLAAAVERFEKN--EDFDPQAIRA 336 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEe-CCCCHHHHHHHHHHHHhC--cccCHHHHHH
Confidence 333234444 46789999999999986433 33345 344577777 445788899999999987 5 34444433
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.58 E-value=0.003 Score=62.22 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHH------hcCCceeeeecChH
Q 012587 265 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEA------TKERGCIAGWVPQE 338 (460)
Q Consensus 265 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~n~~~~~~vp~~ 338 (460)
++..++|.+|.+..+.+++.+....+.++..+...+|....+. .-...+.++ .++++.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~--------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA--------SGEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST--------THHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH--------HHHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 4568999999999999999999999999999888888775321 111222211 13577777887754
Q ss_pred hhh---ccccccccc---ccCChhHHHHHHHhCCceecccccccc-hhhHHHHHhhhceeeeecCCcchHHHHHHHHHHH
Q 012587 339 EVL---AHSAVGGFL---THCGWNSTLESIVAGMPMICWPSFADQ-QINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLM 411 (460)
Q Consensus 339 ~il---~~~~~~~~I---~HGG~gs~~eal~~GvP~l~~P~~~DQ-~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l 411 (460)
+-| ..+++ ++ ..+|.+|++|||+.|||+|.+|-..=. ..-+..+ ..+|+...+.. +.++-.+.--++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA~--s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIAD--SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-S--SHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcCC--CHHHHHHHHHHHh
Confidence 433 44665 43 568999999999999999999954322 2233445 46777755532 3444333333343
Q ss_pred hH
Q 012587 412 VE 413 (460)
Q Consensus 412 ~~ 413 (460)
+|
T Consensus 429 ~D 430 (468)
T PF13844_consen 429 TD 430 (468)
T ss_dssp H-
T ss_pred CC
Confidence 44
No 114
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.58 E-value=0.0031 Score=62.38 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=60.5
Q ss_pred cCCceeeeecChH---hhhcccccccccc--c-------CCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceee
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLT--H-------CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 392 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~--H-------GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~ 392 (460)
.+++.+.+|+|+. .++..+++ +|. . -|. .+++||+++|+|+|+....+ ....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 4678888999975 46778887 553 2 344 57899999999999875432 33445 3434677
Q ss_pred eecCCcchHHHHHHHHHHHh-HhHHHHH
Q 012587 393 DIKDLCDRNIVEKAVNDLMV-ERKEEFM 419 (460)
Q Consensus 393 ~~~~~~~~~~l~~~i~~~l~-~~~~~~~ 419 (460)
.+ ..-+.+++.++|.++++ | ++.+
T Consensus 351 lv-~~~d~~~la~ai~~l~~~d--~~~~ 375 (406)
T PRK15427 351 LV-PENDAQALAQRLAAFSQLD--TDEL 375 (406)
T ss_pred Ee-CCCCHHHHHHHHHHHHhCC--HHHH
Confidence 76 44689999999999998 7 5533
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.57 E-value=0.004 Score=53.39 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=64.5
Q ss_pred hcCCceeeeecC---hHhhhccccccccccc----CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCC
Q 012587 325 TKERGCIAGWVP---QEEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 397 (460)
Q Consensus 325 ~~~n~~~~~~vp---~~~il~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~ 397 (460)
..+++.+.++++ ...++..+++ +|+. |...++.||+++|+|+|+.- ...+...+ ...+.|..++ .
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~-~ 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFD-P 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEES-T
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeC-C
Confidence 346888899998 2677788887 6665 56779999999999999753 44555556 4556688885 3
Q ss_pred cchHHHHHHHHHHHhHhHHHHHHHHH
Q 012587 398 CDRNIVEKAVNDLMVERKEEFMESAD 423 (460)
Q Consensus 398 ~~~~~l~~~i~~~l~~~~~~~~~~a~ 423 (460)
.+.+++.++|.+++++ ++.+++..
T Consensus 143 ~~~~~l~~~i~~~l~~--~~~~~~l~ 166 (172)
T PF00534_consen 143 NDIEELADAIEKLLND--PELRQKLG 166 (172)
T ss_dssp TSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC--HHHHHHHH
Confidence 4999999999999998 64444433
No 116
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.55 E-value=0.0074 Score=61.90 Aligned_cols=75 Identities=11% Similarity=0.014 Sum_probs=51.2
Q ss_pred CceeeeecChH-hhhcccccccccc---cCC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHH
Q 012587 328 RGCIAGWVPQE-EVLAHSAVGGFLT---HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNI 402 (460)
Q Consensus 328 n~~~~~~vp~~-~il~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~ 402 (460)
++.+.++.++. .+++.+++ ||. +=| ..++.||+++|+|+|+....+.. . + .. |.+..+. -+.++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V-~~-g~nGll~--~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-F-RS-FPNCLTY--KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-E-ee-cCCeEec--CCHHH
Confidence 34455666654 58988887 664 223 46899999999999998765422 1 3 22 3332332 47899
Q ss_pred HHHHHHHHHhH
Q 012587 403 VEKAVNDLMVE 413 (460)
Q Consensus 403 l~~~i~~~l~~ 413 (460)
+.+++.++|++
T Consensus 671 fAeAI~~LLsd 681 (794)
T PLN02501 671 FVAKVKEALAN 681 (794)
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 117
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.53 E-value=0.0032 Score=62.39 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=60.1
Q ss_pred CCceeeeecChHh---hhcccccccccccCC----hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcc
Q 012587 327 ERGCIAGWVPQEE---VLAHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 399 (460)
Q Consensus 327 ~n~~~~~~vp~~~---il~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~ 399 (460)
+++.+.+|+++.+ ++..+++.++|...- ..+++||+++|+|+|+.... .....+ +..+.|..+....+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i-~~~~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIV-DNGGNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHh-cCCCcEEEeCCCCC
Confidence 4677789999764 444433333654432 46899999999999986533 345556 45347887755568
Q ss_pred hHHHHHHHHHHHhHhHHHHHH
Q 012587 400 RNIVEKAVNDLMVERKEEFME 420 (460)
Q Consensus 400 ~~~l~~~i~~~l~~~~~~~~~ 420 (460)
.+++.++|.++++| +..++
T Consensus 364 ~~~la~~I~~ll~~--~~~~~ 382 (407)
T cd04946 364 PNELVSSLSKFIDN--EEEYQ 382 (407)
T ss_pred HHHHHHHHHHHHhC--HHHHH
Confidence 89999999999986 55443
No 118
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.31 E-value=0.21 Score=49.45 Aligned_cols=181 Identities=10% Similarity=0.105 Sum_probs=100.6
Q ss_pred hhhhhhcCCCCcEEEEEecCcccC------C-HHH---HHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCC--chHHHHH
Q 012587 257 CMAWLDKQPKQSVIYVSFGSIAVM------S-RDQ---LIEFYYGLVHSKKSFLWVIRPDLISGKDGENQI--PEELLEA 324 (460)
Q Consensus 257 l~~~l~~~~~~~~V~vs~GS~~~~------~-~~~---~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 324 (460)
+..|+...+.+++|-|+.-..... . .+. +..+++.+.+.|+++++..-...... ...+.. ...+.+.
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~-~~~dD~~~~~~l~~~ 302 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDS-YNKDDRMVALNLRQH 302 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccC-CCCchHHHHHHHHHh
Confidence 344554334567888876543211 1 122 33444555556888766542110000 000111 1122233
Q ss_pred hc--CCceee--eecCh--HhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeee-ec-C
Q 012587 325 TK--ERGCIA--GWVPQ--EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD-IK-D 396 (460)
Q Consensus 325 ~~--~n~~~~--~~vp~--~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~-~~-~ 396 (460)
++ ++..+. ++-+. ..++.+|++ +|..==+ ++.-|+..|||.+.++. |....+ .+ +.+|.... .+ +
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~~K~~~-~~-~~lg~~~~~~~~~ 375 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--EHKSAG-IM-QQLGLPEMAIDIR 375 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--hHHHHH-HH-HHcCCccEEechh
Confidence 32 233332 33343 477888886 7764333 45568899999999987 433333 34 46787765 44 7
Q ss_pred CcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012587 397 LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKM 452 (460)
Q Consensus 397 ~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 452 (460)
+++.++|.+.+.++++|+ +.+++..++-.+++++. ....+.++++.+.+
T Consensus 376 ~l~~~~Li~~v~~~~~~r-~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~~ 424 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQL-PALNARLAEAVSRERQT------GMQMVQSVLERIGE 424 (426)
T ss_pred hCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 889999999999999953 56777766666665552 14456666666543
No 119
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.30 E-value=0.0017 Score=62.42 Aligned_cols=111 Identities=17% Similarity=0.331 Sum_probs=78.7
Q ss_pred hcCCceeeeecChHhhh---ccccccccccc-------CCh------hHHHHHHHhCCceecccccccchhhHHHHHhhh
Q 012587 325 TKERGCIAGWVPQEEVL---AHSAVGGFLTH-------CGW------NSTLESIVAGMPMICWPSFADQQINSRFVGEVW 388 (460)
Q Consensus 325 ~~~n~~~~~~vp~~~il---~~~~~~~~I~H-------GG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~ 388 (460)
..+|+.+.+|+|+.++. .. +.+++... +.+ +-+.+++++|+|+|+. ++...+..+ ++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~ 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VEN 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhC
Confidence 44689999999987664 33 33222211 111 2377889999999985 456677777 578
Q ss_pred ceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012587 389 KLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVN 448 (460)
Q Consensus 389 G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 448 (460)
++|..++ +.+++.+.+.++..++-..+++|++++++++++ |..-.+++.+++.
T Consensus 279 ~~G~~v~---~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD---SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC---CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 9999995 667899999887655446789999999999997 6665666665554
No 120
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.29 E-value=0.071 Score=54.16 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=62.9
Q ss_pred cCCceeeeecChHhhhcccccccccc---cCCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec-C--Cc
Q 012587 326 KERGCIAGWVPQEEVLAHSAVGGFLT---HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-D--LC 398 (460)
Q Consensus 326 ~~n~~~~~~vp~~~il~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~-~--~~ 398 (460)
.+++.+.++.+...++..+++ +|. .-|. -+++||+++|+|+|+..... .+...+ +.-..|..++ . .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCcccc
Confidence 456777788888899999997 554 3343 58999999999999975421 133344 3323466654 1 22
Q ss_pred c----hHHHHHHHHHHHhH-hHHHHHHHHHHHHHHH
Q 012587 399 D----RNIVEKAVNDLMVE-RKEEFMESADRMANLA 429 (460)
Q Consensus 399 ~----~~~l~~~i~~~l~~-~~~~~~~~a~~l~~~~ 429 (460)
+ .+.|+++|.+++++ ....+.+++.+.++.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 3 78899999999963 1123445555544443
No 121
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.27 E-value=0.031 Score=54.51 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=58.8
Q ss_pred cCCceeeeecCh-Hhhhccccccccccc--CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHH
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLTH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNI 402 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~ 402 (460)
++++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..+ ...+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv-~~~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLV-PKGDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEe-CCCcHHH
Confidence 456777777664 678888998444454 33468999999999999864321 123344 344567776 5568999
Q ss_pred HHHHHHHHHhH
Q 012587 403 VEKAVNDLMVE 413 (460)
Q Consensus 403 l~~~i~~~l~~ 413 (460)
+.++|.++++|
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 99999999997
No 122
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.21 E-value=0.051 Score=52.61 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=66.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCceE-EecCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQF-KTLTDGLPRDHPRTP 83 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (460)
|||+|+-..+.||+.-+.++.++|+++ +.+|++++.+.+.+-++. .|.++- ..++.. .. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~-----------~P~vd~vi~~~~~--~~----~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR-----------MPEVNEAIPMPLG--HG----A 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc-----------CCccCEEEecccc--cc----h
Confidence 589999999999999999999999996 999999998665444433 333432 222211 00 0
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEE
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 137 (460)
..+ ... .. +...++. .++|++|.-........++...|+|.-.
T Consensus 64 ~~~----~~~----~~-l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 LEI----GER----RR-LGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hhh----HHH----HH-HHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 000 11 1222333 3999999765555667778888888655
No 123
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.15 E-value=0.2 Score=48.47 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCce-EEecCCCCCC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQ-FKTLTDGLPR 77 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (460)
|.+ +++||+|+-....||+.-+.++.++|+++ +.+|++++.+.+.+-+.. .|.++ +..++..
T Consensus 1 ~~~-~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~-----------~P~id~vi~~~~~--- 65 (352)
T PRK10422 1 MDK-PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE-----------NPEINALYGIKNK--- 65 (352)
T ss_pred CCC-CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc-----------CCCceEEEEeccc---
Confidence 444 46799999999999999999999999998 899999998766554432 33343 3333311
Q ss_pred CCCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEE
Q 012587 78 DHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 137 (460)
.......+..+. ..++ .++. .++|++|.-........++...|.|...
T Consensus 66 -----~~~~~~~~~~~~----~l~~-~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 66 -----KAGASEKIKNFF----SLIK-VLRA--NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -----cccHHHHHHHHH----HHHH-HHhh--CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 001111111111 1112 2233 3999999665444556677777887755
No 124
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.11 E-value=0.34 Score=47.95 Aligned_cols=100 Identities=11% Similarity=0.006 Sum_probs=59.4
Q ss_pred HHHHHHHHhhCCCcE-EEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecC-h---Hhhhccccccccccc----CCh
Q 012587 285 LIEFYYGLVHSKKSF-LWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVP-Q---EEVLAHSAVGGFLTH----CGW 355 (460)
Q Consensus 285 ~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp-~---~~il~~~~~~~~I~H----GG~ 355 (460)
+..+++++..++.++ ++.++.+ .. . ...++...++.. + ..++..+++ ||.- |--
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g------~~-~--------~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp 320 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKF------SP-F--------TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYP 320 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCC------Cc-c--------cccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCc
Confidence 456778887765443 3444321 10 1 123555556653 2 445666786 6643 234
Q ss_pred hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHH
Q 012587 356 NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVN 408 (460)
Q Consensus 356 gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~ 408 (460)
.++.||+++|+|+|.....+ ....+ +. +.|..++ .-+.+.|++.++
T Consensus 321 ~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~-~~d~~~La~~~~ 366 (405)
T PRK10125 321 LILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVS-EEEVLQLAQLSK 366 (405)
T ss_pred CHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEEC-CCCHHHHHhccC
Confidence 68999999999999997654 22234 33 5687774 447777876543
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.05 E-value=0.082 Score=46.93 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=35.6
Q ss_pred cCCceeeeecCh----HhhhcccccccccccCC----hhHHHHHHHhCCceecccccc
Q 012587 326 KERGCIAGWVPQ----EEVLAHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFA 375 (460)
Q Consensus 326 ~~n~~~~~~vp~----~~il~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~ 375 (460)
.+|+.+.+++++ ..++..+++ +|+-.. .+++.||+++|+|+|+.+..+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 457888887632 334444777 776665 689999999999999988654
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.92 E-value=0.017 Score=47.55 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChH
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.+..++.. .....
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-----------~~~i~~~~~~~~--------~k~~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI-----------IEGIKVIRLPSP--------RKSPL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH-----------hCCeEEEEecCC--------CCccH
Confidence 678887776666 45779999999999999998444333322 234777766422 11122
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhC-CceEEEec
Q 012587 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVG-VSIIYFRT 140 (460)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lg-iP~v~~~~ 140 (460)
..+. . -.+..++++. +||+|.+..... .+..++...| +|+|....
T Consensus 59 ~~~~-----~-~~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 59 NYIK-----Y-FRLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH-----H-HHHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 2221 1 2557777776 999997766543 3556678888 89986544
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.92 E-value=0.00091 Score=50.97 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=42.4
Q ss_pred hhhhhhhcCCCCcEEEEEecCcccC---CH--HHHHHHHHHHhhCCCcEEEEEccC
Q 012587 256 SCMAWLDKQPKQSVIYVSFGSIAVM---SR--DQLIEFYYGLVHSKKSFLWVIRPD 306 (460)
Q Consensus 256 ~l~~~l~~~~~~~~V~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 306 (460)
.+.+|+...+++|.|+||+||.... .. ..+..++++++.++..+|+.+...
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 3667998888999999999998754 22 478889999999999999998654
No 128
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.91 E-value=0.34 Score=44.65 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc-hhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY-YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
||.|- .+-.-|+.-+..|-.+|.++||+|.+-+-... ...+.+.+| +.+..+... ...++
T Consensus 2 kVwiD-I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg-----------f~~~~Igk~-------g~~tl 62 (346)
T COG1817 2 KVWID-IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG-----------FPYKSIGKH-------GGVTL 62 (346)
T ss_pred eEEEE-cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC-----------CCeEeeccc-------CCccH
Confidence 44432 33446888889999999999999999886332 224444443 666666531 11233
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchh
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~ 143 (460)
...+-.... -.-.+.+++.+. +||+.+. .....+..+|.-+|+|.|.+....-
T Consensus 63 ~~Kl~~~~e-R~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 63 KEKLLESAE-RVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHHHHHHHH-HHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 323222222 223457777776 9999999 5667789999999999999887643
No 129
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.89 E-value=0.004 Score=50.98 Aligned_cols=80 Identities=26% Similarity=0.321 Sum_probs=50.1
Q ss_pred cCCceeeeecCh-Hhhhccccccccccc--CC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchH
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLTH--CG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 401 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~H--GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~ 401 (460)
.+|+.+.+|++. .++++.+++.+..+. .| .+++.|++++|+|+|+.+.. ..... +..+.|..+ .-+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--ANDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---TT-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--CCCHH
Confidence 469999999873 677889998555442 23 48999999999999997651 22223 335777766 35999
Q ss_pred HHHHHHHHHHhH
Q 012587 402 IVEKAVNDLMVE 413 (460)
Q Consensus 402 ~l~~~i~~~l~~ 413 (460)
++.+++.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 130
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.86 E-value=0.11 Score=49.54 Aligned_cols=131 Identities=14% Similarity=0.045 Sum_probs=74.1
Q ss_pred CCcEEEEEecCcc---cCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeee--cC-hHh
Q 012587 266 KQSVIYVSFGSIA---VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGW--VP-QEE 339 (460)
Q Consensus 266 ~~~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~--vp-~~~ 339 (460)
+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+++ .+......+.+..+ +..+.+- ++ -.+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~------~e~~~~~~i~~~~~-~~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND------AEKQRAERIAEALP-GAVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH------HHHHHHHHHHhhCC-CCeecCCCCHHHHHH
Confidence 4566666666533 3456678888888876677776654321 00011112222222 2233332 33 377
Q ss_pred hhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHHhhhcee---eee-c-CCcchHHHHHHHHHHH
Q 012587 340 VLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLG---LDI-K-DLCDRNIVEKAVNDLM 411 (460)
Q Consensus 340 il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g---~~~-~-~~~~~~~l~~~i~~~l 411 (460)
++++|++ +|+. -.|.++=|.+.|+|+|.+=-..+ ..+-. =+|-. +.- . ...+++++.+++.++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~----p~~~~-P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATD----PGRTG-GYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCC----Hhhcc-cCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 8888886 7776 78999999999999987621111 11110 01111 111 1 5789999999888765
No 131
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.80 E-value=0.73 Score=46.84 Aligned_cols=74 Identities=20% Similarity=0.146 Sum_probs=49.6
Q ss_pred cCCceeeeecCh-Hhhhcccccccccc---cCC-hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 326 KERGCIAGWVPQ-EEVLAHSAVGGFLT---HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 326 ~~n~~~~~~vp~-~~il~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
.+++.+.+|..+ ..+|..+++ ||. +-| .+++.||+++|+|+|+.... .+...+ +.-..|..++ .-+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp-~~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILD-DAQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEEC-CCCh
Confidence 467888888654 667888897 764 345 46999999999999977643 345555 3445677774 2344
Q ss_pred HHHHHHH
Q 012587 401 NIVEKAV 407 (460)
Q Consensus 401 ~~l~~~i 407 (460)
+.+.+++
T Consensus 526 ~aLa~ai 532 (578)
T PRK15490 526 VNLDQAC 532 (578)
T ss_pred hhHHHHH
Confidence 4454444
No 132
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.70 E-value=0.33 Score=46.60 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
||||+++-....||+.=++++-+.|+++ +.++++++.+.+.+-+... +.++-...-.. . .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~-----------p~I~~vi~~~~--~-----~ 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN-----------PEIDKVIIIDK--K-----K 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC-----------hHhhhhccccc--c-----c
Confidence 6899999999999999999999999998 5999999985554444322 22221111000 0 0
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcC-CCCccEEEEcCCcchHHHHHHHhCCceEE
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 137 (460)
.. ........+.+.+ ..++|+|+.=...+-...++...++|.-.
T Consensus 63 ~~----------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 63 KG----------LGLKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred cc----------cchHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 01 0112223333333 23899999877777677777788888765
No 133
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.60 E-value=0.2 Score=48.20 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCce-EEecCCCCCCCCCCCCC
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQ-FKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (460)
||+|+-..+.||+.-+.++.++|++. +.+|++++.+.+.+-+.. .+.++ +..++.. .. ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~-----------~p~id~v~~~~~~--~~----~~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER-----------MPEIRQAIDMPLG--HG----AL 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc-----------CchhceeeecCCc--cc----ch
Confidence 69999999999999999999999997 999999998554444432 22332 2222210 00 00
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEE
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 137 (460)
.+. . . ..+...++. .++|++|.-........++...|+|.-.
T Consensus 64 ~~~----~----~-~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 64 ELT----E----R-RRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred hhh----H----H-HHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 110 0 0 111222333 3999999876655666777788888643
No 134
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.56 E-value=0.05 Score=54.38 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=80.7
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHH---HH---hcCCceeeeecChH
Q 012587 265 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL---EA---TKERGCIAGWVPQE 338 (460)
Q Consensus 265 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~---~~~n~~~~~~vp~~ 338 (460)
++..+||++|--....++..++..++.++..+..++|....+.. |. ..++ +. .++.+.+.+-++..
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~---ge-----~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV---GE-----QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc---ch-----HHHHHHHHHhCCCccceeeccccchH
Confidence 46789999999999999999999999999999999999864311 11 1221 11 24566665555533
Q ss_pred hh-----hcccccccccccCChhHHHHHHHhCCceecccccccchhhH-HHHHhhhceeeeec
Q 012587 339 EV-----LAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINS-RFVGEVWKLGLDIK 395 (460)
Q Consensus 339 ~i-----l~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na-~~~~e~~G~g~~~~ 395 (460)
+= |..-.+.-..+. |..|.++.|+.|||||.+|...--...| -.+ -.+|+|..+.
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hlia 888 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLIA 888 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHHh
Confidence 22 222222224444 7889999999999999999754333333 344 3689998663
No 135
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.47 E-value=0.32 Score=46.96 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=67.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCce-EEecCCCCCCCCCCCCC
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQ-FKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (460)
||+|+-....||+.-+.++.++|+++ +.+|++++.+.+.+-+.. .+.++ +..++.... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~-----------~p~vd~vi~~~~~~~------~~ 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE-----------NPDINALYGLDRKKA------KA 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc-----------CCCccEEEEeChhhh------cc
Confidence 69999999999999999999999997 899999999665544433 33343 344432100 00
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEE
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 137 (460)
.... +.. ....+.+ ++. .++|++|.-........++...|.|.-.
T Consensus 64 ~~~~-~~~----~~~l~~~-lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 64 GERK-LAN----QFHLIKV-LRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred hHHH-HHH----HHHHHHH-HHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0110 111 1122222 333 3999999665555677888888999755
No 136
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.91 E-value=0.014 Score=48.88 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcHHH
Q 012587 22 SMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLL 101 (460)
Q Consensus 22 p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (460)
-+..|+++|.++||+|++++........... ..++.+..++...... ...... ....+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-------~~~~~~-----~~~~~ 63 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE----------EDGVRVHRLPLPRRPW-------PLRLLR-----FLRRL 63 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE----------ETTEEEEEE--S-SSS-------GGGHCC-----HHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc----------cCCceEEeccCCccch-------hhhhHH-----HHHHH
Confidence 4678999999999999999974433322111 2346766665211111 000100 11233
Q ss_pred HHHH--HcCCCCccEEEEcCCcc--hHHHHHHHhCCceEEEec
Q 012587 102 KEMV--SDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 102 ~~~~--~~~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~~ 140 (460)
..++ +. .+||+|.+..... .+..+....++|+|....
T Consensus 64 ~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 64 RRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 4444 34 4999998776432 234434388999988655
No 137
>PRK14098 glycogen synthase; Provisional
Probab=95.78 E-value=0.18 Score=51.24 Aligned_cols=131 Identities=8% Similarity=0.014 Sum_probs=76.3
Q ss_pred cEEEEEecCcccC-CHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHH---HHhcCCceeeeecCh---Hhh
Q 012587 268 SVIYVSFGSIAVM-SRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL---EATKERGCIAGWVPQ---EEV 340 (460)
Q Consensus 268 ~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~~~~~~vp~---~~i 340 (460)
..+++..|.+... ..+.+...+..+.+.+.++++.-. |.. .....+. ++.++++.+..+++. ..+
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~-------G~~-~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGS-------GDK-EYEKRFQDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeC-------CCH-HHHHHHHHHHHHCCCCEEEEEecCHHHHHHH
Confidence 3455666766532 334444433344334566655432 111 1112222 234578888888886 467
Q ss_pred hcccccccccccC---Ch-hHHHHHHHhCCceecccccc--cchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHh
Q 012587 341 LAHSAVGGFLTHC---GW-NSTLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 341 l~~~~~~~~I~HG---G~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
++.+++ ++.-. |. .+.+||+++|+|.|+....+ |...+ .. +.-+.|..+ ...+++.|.++|.++++
T Consensus 379 ~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~-~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 379 IAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIF-HDYTPEALVAKLGEALA 450 (489)
T ss_pred HHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEe-CCCCHHHHHHHHHHHHH
Confidence 888887 65422 33 37789999999888876533 32211 11 123677777 55689999999998764
No 138
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.71 E-value=1 Score=41.99 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCccchhHHhhccccccccccCCCCce-EEecCCCCCCCCCCCCC
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQ-FKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (460)
||+++-..+.|++.-+.++.++|+++. -+|++++.+.+.+.+ +. .+.++ +..++... ...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~-~~----------~p~id~v~~~~~~~------~~~ 63 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL-EL----------MPEVDRVIVLPKKH------GKL 63 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH-hc----------CCccCEEEEcCCcc------ccc
Confidence 689999999999999999999999974 899999996554444 32 22342 33332110 001
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcC-CCCccEEEEcCCcchHHHHHHHhCCceEE
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 137 (460)
.. ..+..+++.+ ..++|+++.-........++...+++...
T Consensus 64 ~~------------~~~~~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 64 GL------------GARRRLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ch------------HHHHHHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 11 1112222222 23899999776655555566666766654
No 139
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.14 Score=51.05 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=83.6
Q ss_pred CCCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHH---H---hcCCceeeeecCh
Q 012587 264 QPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLE---A---TKERGCIAGWVPQ 337 (460)
Q Consensus 264 ~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~---~~~n~~~~~~vp~ 337 (460)
-++..+||++|+...+..++.+..-...++..+-.++|...++ +...+...+++ + .++++++.+-.|.
T Consensus 426 lp~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~------~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 426 LPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG------DDAEINARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC------CcHHHHHHHHHHHHHcCCChhheeecCCCCC
Confidence 3467999999999999999999999999999998999988642 12223333332 1 1356777666664
Q ss_pred ---Hhhhccccccccc---ccCChhHHHHHHHhCCceecccccccchh--hHHHHHhhhceeeee
Q 012587 338 ---EEVLAHSAVGGFL---THCGWNSTLESIVAGMPMICWPSFADQQI--NSRFVGEVWKLGLDI 394 (460)
Q Consensus 338 ---~~il~~~~~~~~I---~HGG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~~~e~~G~g~~~ 394 (460)
.+=+..+++ |+ --||..|+.|+|..|||+|..+ ++|+. |+.-++..+|+-..+
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 444455665 65 4699999999999999999984 66653 333333444554444
No 140
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.29 E-value=0.11 Score=45.40 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=63.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCC-C-CCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPR-D-HPRTPD 84 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 84 (460)
||||+..=-+. +.--+.+|+++|++.||+|+++.+.....-. |..... ...+++.....+... + ......
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~----g~sit~---~~pl~~~~~~~~~~~~~~~~~~v~ 72 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT----GHSITL---HKPLRVTEVEPGHDPGGVEAYAVS 72 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS----TTS--S---SSEEEEEEEE-TTCCSTTEEEEES
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc----ceeecC---CCCeEEEEEEecccCCCCCEEEEc
Confidence 68888877665 5556889999998889999999986543222 221111 112444333211111 1 001112
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC----------cc---hHHHHHHHhCCceEEEecch
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRTIS 142 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~----------~~---~~~~~A~~lgiP~v~~~~~~ 142 (460)
....-|-.+ .+..++.+ .+||+||+..- +. .+..-|...|||.|.++...
T Consensus 73 GTPaDcv~~------al~~~~~~--~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 73 GTPADCVKL------ALDGLLPD--KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp S-HHHHHHH------HHHCTSTT--SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred CcHHHHHHH------HHHhhhcc--CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 223222222 22333333 26999997532 22 45666778999999988753
No 141
>PHA01633 putative glycosyl transferase group 1
Probab=95.17 E-value=0.8 Score=43.76 Aligned_cols=85 Identities=13% Similarity=-0.016 Sum_probs=56.3
Q ss_pred hcCCceee---eecCh---Hhhhccccccccccc---CC-hhHHHHHHHhCCceecccc------cccc------hhhHH
Q 012587 325 TKERGCIA---GWVPQ---EEVLAHSAVGGFLTH---CG-WNSTLESIVAGMPMICWPS------FADQ------QINSR 382 (460)
Q Consensus 325 ~~~n~~~~---~~vp~---~~il~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~------~~DQ------~~na~ 382 (460)
.++++.+. +++++ ..+++.+++ +|.- =| ..++.||+++|+|+|..-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45678877 45554 466788887 6643 34 3578999999999988633 2232 23333
Q ss_pred HHHh-hhceeeeecCCcchHHHHHHHHHHHh
Q 012587 383 FVGE-VWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 383 ~~~e-~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
...+ ..|.|..+ ...+++++.+++.++++
T Consensus 277 ~~~~~~~g~g~~~-~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 277 EYYDKEHGQKWKI-HKFQIEDMANAIILAFE 306 (335)
T ss_pred HhcCcccCceeee-cCCCHHHHHHHHHHHHh
Confidence 2221 23666666 56899999999999965
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.89 E-value=0.31 Score=36.65 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=44.0
Q ss_pred cCChhHHHHHHHhCCceecccccccchhhHHHHHhhhc-eeeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012587 352 HCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWK-LGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMA 426 (460)
Q Consensus 352 HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G-~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~ 426 (460)
+|-..-+.|++++|+|+|.-.. ......+ +. | -++.. . +.+++.+.+.++++| +..+++..+-+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~-~--~~~el~~~i~~ll~~--~~~~~~ia~~a 73 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY-N--DPEELAEKIEYLLEN--PEERRRIAKNA 73 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE-C--CHHHHHHHHHHHHCC--HHHHHHHHHHH
Confidence 4556789999999999998864 3333334 22 4 34444 2 999999999999998 65554444333
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.41 E-value=0.48 Score=40.46 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=62.9
Q ss_pred EcCCCCCCHHHHHHHHHHH-HhC-CCeEEEEeCccchhH--HhhccccccccccCCCCceEEecCCCCCCCCCCCCCChH
Q 012587 12 LPLPAVGHVNSMLNLAELL-GHA-GIKITFLNTEHYYDR--VIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (460)
Q Consensus 12 ~~~~~~Gh~~p~l~La~~L-~~r-GH~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
+..++.||..=++.|.+.+ .++ .++..+++..+.... +.+ ..... .....+..+|...... +...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~-~~~~~-----~~~~~~~~~~r~r~v~-----q~~~ 71 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQ-LEKSS-----SKRHKILEIPRAREVG-----QSYL 71 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHH-HHHhc-----cccceeeccceEEEec-----hhhH
Confidence 3456679999999999999 333 566666665333221 111 11000 0001233333211111 1111
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc--hHHHHHHHh------CCceEEEecc
Q 012587 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREV------GVSIIYFRTI 141 (460)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~--~~~~~A~~l------giP~v~~~~~ 141 (460)
.............+.-+.++ +||+||+..-.. ..+.+|..+ |.+.|.+.+.
T Consensus 72 ~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 72 TSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred hhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 11122222233444555555 999999887655 578889999 9999998776
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=93.08 E-value=4.5 Score=38.77 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=45.8
Q ss_pred eecChHh---hhccccccccccc-CC-hhHHHHHHHhCCceecccccc--cchh---hHHHHHhh-----------hcee
Q 012587 333 GWVPQEE---VLAHSAVGGFLTH-CG-WNSTLESIVAGMPMICWPSFA--DQQI---NSRFVGEV-----------WKLG 391 (460)
Q Consensus 333 ~~vp~~~---il~~~~~~~~I~H-GG-~gs~~eal~~GvP~l~~P~~~--DQ~~---na~~~~e~-----------~G~g 391 (460)
.++|+.+ +++.+++-++-++ .| ..++.||+++|+|+|+.-..+ |... |+-.+ +. .++|
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHVG 274 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcccc
Confidence 3477544 5788888222233 33 458999999999999976543 3222 22111 10 1345
Q ss_pred eeecCCcchHHHHHHHHHHHhH
Q 012587 392 LDIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 392 ~~~~~~~~~~~l~~~i~~~l~~ 413 (460)
..++ .+.+++.+.+.++|.|
T Consensus 275 ~~v~--~~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 275 YFLD--PDIEDAYQKLLEALAN 294 (331)
T ss_pred cccC--CCHHHHHHHHHHHHhC
Confidence 5442 3667777778787774
No 145
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.38 E-value=2.7 Score=38.31 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=63.6
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCC-CCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP-RTP 83 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (460)
++||||+..=-+. |.--+.+|+++|++.| +|+++.+....... |..... ...+++..+.. ..... ...
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~----g~ait~---~~pl~~~~~~~--~~~~~~y~v 72 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGM----SHAMTL---GVPLRIKEYQK--NNRFFGYTV 72 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCC----cccccC---CCCeEEEEEcc--CCCceEEEE
Confidence 3469887765432 3345778999999888 79988875532211 222222 22355554431 10100 011
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC-------------cchHHHHHHHhCCceEEEecc
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY-------------MSRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~-------------~~~~~~~A~~lgiP~v~~~~~ 141 (460)
.....-|-.+ .+..++.+ +||+||+... +..+..-|..+|||.|.++..
T Consensus 73 ~GTPaDCV~l------al~~~~~~---~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 73 SGTPVDCIKV------ALSHILPE---KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred cCcHHHHHHH------HHHhhcCC---CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 2223333222 22334433 8999987543 225666778899999998763
No 146
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.27 E-value=5.6 Score=37.68 Aligned_cols=58 Identities=16% Similarity=0.036 Sum_probs=41.4
Q ss_pred cChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchh-hH---HHHHhhhceeeeec
Q 012587 335 VPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQI-NS---RFVGEVWKLGLDIK 395 (460)
Q Consensus 335 vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~-na---~~~~e~~G~g~~~~ 395 (460)
=|+..+|..++. ++||---.+=+.||+..|+|+.+++... +.. .. +.+ ++.|.-..+.
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 368899999997 5666666688899999999999999876 221 11 234 3457766664
No 147
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=91.95 E-value=2.4 Score=38.32 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
||||+..=-+ =|.--+.+|+++|+ .+++|+++.+.....-.... ... ...++...+.. ... .....
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~s----lTl---~~Plr~~~~~~----~~~-av~GT 66 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHS----LTL---HEPLRVRQVDN----GAY-AVNGT 66 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccc----ccc---ccCceeeEecc----ceE-EecCC
Confidence 4676655433 34445778899999 99999999986643332221 111 11233333322 111 11122
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC-------------cchHHHHHHHhCCceEEEecc
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY-------------MSRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~-------------~~~~~~~A~~lgiP~v~~~~~ 141 (460)
..-|-. -.+..++++. +||+||+... +.+|.+=|..+|||.|.++..
T Consensus 67 PaDCV~------lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 67 PADCVI------LGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred hHHHHH------HHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 222222 2346667664 6999987543 224666678999999998775
No 148
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=91.68 E-value=3.6 Score=37.48 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC-CCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT-DGLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 85 (460)
||||+..=-+. |.--+.+|+++|++ +|+|+++.+.....-. |..... ...++...+. ++.....+ ....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~----g~sit~---~~pl~~~~~~~~~~~~~~~-~v~G 70 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS----SHSITI---YEPIIIKEVKLEGINSKAY-SISG 70 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc----cccccC---CCCeEEEeeccCCCCccEE-EECC
Confidence 47777665433 33337889999975 6899999875542221 222222 2224444332 10000000 1122
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC----------cc---hHHHHHHHhCCceEEEecc
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~----------~~---~~~~~A~~lgiP~v~~~~~ 141 (460)
...-|-.+ .+..++. .+||+||+..- ++ .+..-|..+|||.|.++..
T Consensus 71 TPaDcV~l------al~~l~~---~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 71 TPADCVRV------ALDKLVP---DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred cHHHHHHH------HHHHhcC---CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 22222222 1233443 38999987532 22 5667778999999998763
No 149
>PLN02939 transferase, transferring glycosyl groups
Probab=91.39 E-value=6.4 Score=42.79 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=55.4
Q ss_pred cCCceeeeecChH---hhhccccccccccc---CC-hhHHHHHHHhCCceecccccc--cchhh--HHHHHhhhceeeee
Q 012587 326 KERGCIAGWVPQE---EVLAHSAVGGFLTH---CG-WNSTLESIVAGMPMICWPSFA--DQQIN--SRFVGEVWKLGLDI 394 (460)
Q Consensus 326 ~~n~~~~~~vp~~---~il~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~--DQ~~n--a~~~~e~~G~g~~~ 394 (460)
.+++.+..+.+.. .+++.+++ ||.- =| ..+.+||+++|+|.|+....+ |-..+ ...+.+.-+.|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578887887764 58889997 6642 23 348999999999999876543 32211 11111123567776
Q ss_pred cCCcchHHHHHHHHHHHh
Q 012587 395 KDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 395 ~~~~~~~~l~~~i~~~l~ 412 (460)
...+++.|..++.++++
T Consensus 914 -~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 -LTPDEQGLNSALERAFN 930 (977)
T ss_pred -cCCCHHHHHHHHHHHHH
Confidence 44688889999988875
No 150
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.31 E-value=1.9 Score=34.27 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
||++.+.++..|.....-++..|.++|++|.++...-..+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 68999999999999999999999999999999876444444444
No 151
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.28 E-value=1 Score=37.97 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 16 AVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 16 ~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
..|=-.-+..|+++|+++||+|++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4455566889999999999999999873
No 152
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.94 E-value=0.6 Score=38.24 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=42.6
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhcc
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHS 53 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 53 (460)
|+..||++.+.++.+|-.-..-++..|.++|++|++++..-..+.+.+..
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a 50 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA 50 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 45679999999999999999999999999999999999755556665543
No 153
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=90.90 E-value=3.8 Score=37.21 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=61.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
||||+.-=-+ =|.--+.+|+++|++.| +|+++.+.....-.. ..... ...+++..++..-.. ........
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g----~ait~---~~pl~~~~~~~~~~~-~~~~v~GT 70 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTG----HSLTL---FEPLRVGQVKVKNGA-HIYAVDGT 70 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccc----cCcCC---CCCeEEEEeccCCCc-cEEEEcCc
Confidence 4777554433 23334778999999998 899998855422221 22221 223555554310000 00111222
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC-------------cchHHHHHHHhCCceEEEecc
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY-------------MSRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~-------------~~~~~~~A~~lgiP~v~~~~~ 141 (460)
..-|-.+. +..++.+ +||+||+..- +..+..-|..+|||.|.++..
T Consensus 71 PaDcv~~g------l~~l~~~---~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 71 PTDCVILG------INELMPE---VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred HHHHHHHH------HHHhccC---CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 22232222 2333333 7999987543 125667778899999998763
No 154
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=90.85 E-value=2 Score=36.61 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=53.2
Q ss_pred hCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCC--CCCCCCCCCChHHHHHHHHhhCcHHHHHHHHcCC
Q 012587 32 HAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGL--PRDHPRTPDKFPELVDSLNCATPPLLKEMVSDSK 109 (460)
Q Consensus 32 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (460)
++||+|+|+|.... .... ++++...+...- .++......++......-. .+...+.++-++ +
T Consensus 1 q~gh~v~fl~~~~~-~~~~-------------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~-G 64 (171)
T PF12000_consen 1 QRGHEVVFLTERKR-PPIP-------------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQ-G 64 (171)
T ss_pred CCCCEEEEEecCCC-CCCC-------------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHc-C
Confidence 57999999995332 2221 146666554311 1111111222222222111 133444554444 5
Q ss_pred CCccEEEEcCCcchHHHHHHHh-CCceEEEecc
Q 012587 110 SPVNCIITDGYMSRAIDAAREV-GVSIIYFRTI 141 (460)
Q Consensus 110 ~~pD~vv~D~~~~~~~~~A~~l-giP~v~~~~~ 141 (460)
..||+|+.......+..+-+.+ ++|.+...-.
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 6999999997766788899999 8999886654
No 155
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=90.68 E-value=2 Score=43.18 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=65.2
Q ss_pred eecChHh---hhcccccccccc---cCCh-hHHHHHHHhCCc----eecccccccchhhHHHHHhhhceeeeecCCcchH
Q 012587 333 GWVPQEE---VLAHSAVGGFLT---HCGW-NSTLESIVAGMP----MICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 401 (460)
Q Consensus 333 ~~vp~~~---il~~~~~~~~I~---HGG~-gs~~eal~~GvP----~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~ 401 (460)
..+++.+ ++..+++ ++. +=|. .++.||+++|+| +|+--+.+- +..+ +-|..+ ...+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllV-nP~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLV-NPYDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEE-CCCCHH
Confidence 4566654 4678887 554 3465 488899999999 665544331 2222 345555 557899
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012587 402 IVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 451 (460)
Q Consensus 402 ~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 451 (460)
.++++|.++|+....+-+++.+++.+.+.+ -+...-+++++++|.
T Consensus 411 ~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 411 GMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 999999999983224555666666666554 333445667776653
No 156
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=90.55 E-value=2.4 Score=38.82 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
|||+++..- | . -..|++.|.++||+|+..+............+ ...+. ...+
T Consensus 1 m~ILvlGGT--~--e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g----------~~~v~--~g~l----------- 52 (256)
T TIGR00715 1 MTVLLMGGT--V--D-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ----------ALTVH--TGAL----------- 52 (256)
T ss_pred CeEEEEech--H--H-HHHHHHHHHhCCCeEEEEEccCCccccccccC----------CceEE--ECCC-----------
Confidence 466665432 2 2 67899999999999999886443222211111 01110 0000
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEE
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYF 138 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~ 138 (460)
....+.+++++. ++|+||--++-+ -+..+|+.+|||++.+
T Consensus 53 ----------~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ----------DPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ----------CHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 123466777775 899888665544 3678899999999996
No 157
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.96 E-value=0.51 Score=37.47 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCC---CHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVG---HVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~G---h~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|||+|+.-|-.+ .-.-+++|+.+-.+|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 689999888644 34678999999999999999998744
No 158
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=89.85 E-value=6.5 Score=35.79 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
||||+..=-+. |.--+.+|+++|++. |+|+++.+.....-. |..... ...+++..+..+ .......
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~----g~ait~---~~pl~~~~~~~~-----~~~v~GT 66 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGA----SHSLTL---TRPLRVEKVDNG-----FYAVDGT 66 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCC----cccccC---CCCeEEEEecCC-----eEEECCc
Confidence 47776655443 344478899999998 799999885532222 222221 222444444211 1112222
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC----------c---chHHHHHHHhCCceEEEecc
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------M---SRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~----------~---~~~~~~A~~lgiP~v~~~~~ 141 (460)
..-|-.+ .+..++.+ +||+||+..- + ..+..-|...|||.|.++..
T Consensus 67 PaDcV~~------gl~~l~~~---~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 67 PTDCVHL------ALNGLLDP---KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred HHHHHHH------HHHhhccC---CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 2222222 22333433 8999987543 1 24666677899999998763
No 159
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=89.23 E-value=7.5 Score=35.43 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=60.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCC-CCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDH-PRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 85 (460)
||||+..=-+. |.--+.+|+++|++ +|+|+++.+.....-. |..... ...+.+..+.. ..+. ......
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~----g~ait~---~~pl~~~~~~~--~~~~~~y~v~G 69 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSAT----GHAITI---RVPLWAKKVFI--SERFVAYATTG 69 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccc----cccccC---CCCceEEEeec--CCCccEEEECC
Confidence 47777665543 34447788999975 6899999885542222 221111 11234333321 0010 001122
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC----------cc---hHHHHHHHhCCceEEEecc
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~----------~~---~~~~~A~~lgiP~v~~~~~ 141 (460)
...-|-.+. +..++.+ +||+||+... ++ .+..-|..+|||.|.++..
T Consensus 70 TPaDcV~la------l~~~~~~---~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 129 (253)
T PRK13935 70 TPADCVKLG------YDVIMDK---KVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSA 129 (253)
T ss_pred cHHHHHHHH------HHhhccC---CCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcc
Confidence 222222222 2333433 8999987532 22 4666677899999998863
No 160
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.20 E-value=3.6 Score=39.01 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.7
Q ss_pred CcEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
++||+|++. |+-|-..-.-++|-.|++.|.+|.+++++.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 468988888 799998889999999999999988887644
No 161
>PRK14099 glycogen synthase; Provisional
Probab=88.70 E-value=8.2 Score=39.19 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=47.5
Q ss_pred cCCc-eeeeecCh-Hhhh-cccccccccc---cCChh-HHHHHHHhCCceecccccc--cchhhHHHHHhh--hceeeee
Q 012587 326 KERG-CIAGWVPQ-EEVL-AHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFA--DQQINSRFVGEV--WKLGLDI 394 (460)
Q Consensus 326 ~~n~-~~~~~vp~-~~il-~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~--~G~g~~~ 394 (460)
++++ .+.+|-.. ..++ +.+++ |+. +=|.| +.+||+++|+|.|+....+ |--.......+. -+.|..+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4454 34466332 2223 45676 664 34544 7789999998777654322 322221111011 1467777
Q ss_pred cCCcchHHHHHHHHH---HHhH
Q 012587 395 KDLCDRNIVEKAVND---LMVE 413 (460)
Q Consensus 395 ~~~~~~~~l~~~i~~---~l~~ 413 (460)
...++++|.+++.+ +++|
T Consensus 427 -~~~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 427 -SPVTADALAAALRKTAALFAD 447 (485)
T ss_pred -CCCCHHHHHHHHHHHHHHhcC
Confidence 45689999999997 4555
No 162
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.26 E-value=3.9 Score=34.20 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=62.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCC-----CCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPR-----DHP 80 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 80 (460)
+|||++.-.|+.|-.--.+.|++.|.++|++|-=+-+++-. ..|. ..+|.+..+..+-.. +..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR-----~gGk-------R~GF~Ivdl~tg~~~~la~~~~~ 72 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR-----EGGK-------RIGFKIVDLATGEEGILARVGFS 72 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee-----cCCe-------EeeeEEEEccCCceEEEEEcCCC
Confidence 57999999999999999999999999999998755554532 2221 335777777643211 110
Q ss_pred -CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCc
Q 012587 81 -RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYM 121 (460)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~ 121 (460)
.....+.-..+.+.....+.++..+++ .|+||.|-..
T Consensus 73 ~~rvGkY~V~v~~le~i~~~al~rA~~~----aDvIIIDEIG 110 (179)
T COG1618 73 RPRVGKYGVNVEGLEEIAIPALRRALEE----ADVIIIDEIG 110 (179)
T ss_pred CcccceEEeeHHHHHHHhHHHHHHHhhc----CCEEEEeccc
Confidence 011222233444443344555554433 6999999653
No 163
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=88.04 E-value=15 Score=31.83 Aligned_cols=57 Identities=23% Similarity=0.340 Sum_probs=39.0
Q ss_pred CcEEEEEcC---C-CCCCHHHHH-HHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC
Q 012587 6 HVHVAILPL---P-AVGHVNSML-NLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT 72 (460)
Q Consensus 6 ~~~il~~~~---~-~~Gh~~p~l-~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (460)
|.||+++-. | -+|=+.-+. .|+..|.++||+|+++|.....+.-... +.+++...+|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~----------y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE----------YNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc----------cCCeEEEEeC
Confidence 457877754 3 367777655 6889999999999999985544322221 5567777776
No 164
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.57 E-value=2 Score=39.54 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=70.6
Q ss_pred cCCceee-eecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhH--HHHHhhhceeeeecCCcchHH
Q 012587 326 KERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINS--RFVGEVWKLGLDIKDLCDRNI 402 (460)
Q Consensus 326 ~~n~~~~-~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na--~~~~e~~G~g~~~~~~~~~~~ 402 (460)
.+|..+. .|-.+.++|.++++ .|--.|.. +-.++=.|||+|.+|-.+-|+.-+ .|-..-+|+.+.+.+ -++..
T Consensus 293 kdnc~l~lsqqsfadiLH~ada--algmAGTA-tEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~ 368 (412)
T COG4370 293 KDNCSLWLSQQSFADILHAADA--ALGMAGTA-TEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQA 368 (412)
T ss_pred cCceEEEEeHHHHHHHHHHHHH--HHHhccch-HHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-Cchhh
Confidence 3566655 77788888888886 66555432 345678999999999999996544 444345677776642 23333
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHH-HHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012587 403 VEKAVNDLMVERKEEFMESADRM-ANLAKKSVNKGGSSYCNLDRLVNDIKM 452 (460)
Q Consensus 403 l~~~i~~~l~~~~~~~~~~a~~l-~~~~~~~~~~~g~~~~~~~~~~~~l~~ 452 (460)
-..+.+++|.| +.+.+++++= ++++-+ -| ++..+.|.+.+
T Consensus 369 a~~~~q~ll~d--p~r~~air~nGqrRiGq----aG----aa~rIAe~l~e 409 (412)
T COG4370 369 AAQAVQELLGD--PQRLTAIRHNGQRRIGQ----AG----AARRIAEELGE 409 (412)
T ss_pred HHHHHHHHhcC--hHHHHHHHhcchhhccC----cc----hHHHHHHHHHH
Confidence 33445559998 8877776632 233332 23 44555555554
No 165
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=87.19 E-value=5.7 Score=35.06 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=36.5
Q ss_pred CcEEEEEcCC--CCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHH
Q 012587 6 HVHVAILPLP--AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (460)
Q Consensus 6 ~~~il~~~~~--~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (460)
|.+|.+++.| +-|-.--+-+|+.+|+++|++|.++-..--...+
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNL 46 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNL 46 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhh
Confidence 5688888885 8899999999999999999999999764444333
No 166
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=86.84 E-value=3.8 Score=36.68 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=26.9
Q ss_pred CCccEEE-EcCCcc-hHHHHHHHhCCceEEEecchhH
Q 012587 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISAC 144 (460)
Q Consensus 110 ~~pD~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 144 (460)
.-||+++ .|+..- .+..=|.++|||+|.++-+-+.
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC
Confidence 3499875 776654 6888899999999998876443
No 167
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=86.75 E-value=12 Score=34.28 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC---CCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHA---GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~r---GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
||||+.-=-+ =|.--+.+|+++|... |++|+++.+....... |...+. ...+++..+.++ .+ ..
T Consensus 1 M~ILlTNDDG-I~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~----ghaiT~---~~pl~~~~~~~~----~y-av 67 (261)
T PRK13931 1 MRILITNDDG-INAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGV----GHCISY---THPMMIAELGPR----RF-AA 67 (261)
T ss_pred CeEEEEcCCC-CCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCC----cccccC---CCCeEEEEeCCC----eE-EE
Confidence 3665554332 1333466788888773 4799999875532211 222222 223555554321 11 12
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC----------cc---hHHHHHHHhCCceEEEec
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~----------~~---~~~~~A~~lgiP~v~~~~ 140 (460)
.....-|-.+. +..++.. .+||+||+..- ++ .+..-|..+|||.|.++.
T Consensus 68 ~GTPaDCV~la------l~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 68 EGSPADCVLAA------LYDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred cCchHHHHHHH------HHHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 22232332222 2344432 38999987533 22 466677899999999886
No 168
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=86.53 E-value=12 Score=35.03 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCceee-eecC---hHhhhccccccccccc--CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec-CCcc
Q 012587 327 ERGCIA-GWVP---QEEVLAHSAVGGFLTH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCD 399 (460)
Q Consensus 327 ~n~~~~-~~vp---~~~il~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~-~~~~ 399 (460)
+|+.+. +++| +..+|+.|+++.|+|+ =|.||+.-.+.+|+|+++-- +-+.|.... | .|+-+-.. +.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e-~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-E-QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-h-CCCeEEecCCccc
Confidence 688765 7887 5789999999777775 48999999999999999753 345555544 3 58877555 6787
Q ss_pred hHHHHHHHHHH
Q 012587 400 RNIVEKAVNDL 410 (460)
Q Consensus 400 ~~~l~~~i~~~ 410 (460)
...++++=+++
T Consensus 281 ~~~v~e~~rql 291 (322)
T PRK02797 281 EDIVREAQRQL 291 (322)
T ss_pred HHHHHHHHHHH
Confidence 77777654444
No 169
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=86.07 E-value=13 Score=34.13 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCC-CCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD-GLPRDHPRTPDK 85 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 85 (460)
||||+..=-+. |.--+.+|+++|...| +|+++.+.....-. |..... ...+....+.. +. ..+ ....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~----g~aiT~---~~pl~~~~~~~~~~--~~y-~v~G 68 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT----GLGITL---HKPLRMYEVDLCGF--KVY-ATSG 68 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc----cccccC---CCCcEEEEeccCCc--ceE-EeCC
Confidence 47776665443 4455889999999888 79998875532222 121111 12244444431 11 001 1222
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcC-----------Ccc---hHHHHHHHhCCceEEEec
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDG-----------YMS---RAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~-----------~~~---~~~~~A~~lgiP~v~~~~ 140 (460)
...-|-.+. +..+ . .+||+||+.. +++ .+..-|..+|||.|.++.
T Consensus 69 TPaDCV~la------l~~l--~--~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 69 TPSDTIYLA------TYGL--G--RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred CHHHHHHHH------HHhc--c--CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 232333221 1222 2 3899998742 222 456667789999999876
No 170
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=86.02 E-value=1.1 Score=36.23 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
|||++...|+.+=.. ...+.+.|.++|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 589999999977777 99999999999999999999665444443
No 171
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=85.26 E-value=2.7 Score=42.38 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=45.3
Q ss_pred eecChHh---hhcccccccccc---cCCh-hHHHHHHHhCCc----eecccccccchhhHHHHHhhhceeeeecCCcchH
Q 012587 333 GWVPQEE---VLAHSAVGGFLT---HCGW-NSTLESIVAGMP----MICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 401 (460)
Q Consensus 333 ~~vp~~~---il~~~~~~~~I~---HGG~-gs~~eal~~GvP----~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~ 401 (460)
+++++.+ ++..+++ +|. +-|. .++.||+++|+| +|+.-..+ .. +...-|..+ ...+.+
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~-------~~~~~g~lv-~p~d~~ 415 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AA-------EELSGALLV-NPYDID 415 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-ch-------hhcCCCEEE-CCCCHH
Confidence 6777654 4778887 553 3455 477999999999 44432221 11 111234555 456899
Q ss_pred HHHHHHHHHHhH
Q 012587 402 IVEKAVNDLMVE 413 (460)
Q Consensus 402 ~l~~~i~~~l~~ 413 (460)
+++++|.++|++
T Consensus 416 ~la~ai~~~l~~ 427 (460)
T cd03788 416 EVADAIHRALTM 427 (460)
T ss_pred HHHHHHHHHHcC
Confidence 999999999984
No 172
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=85.15 E-value=1.3 Score=41.87 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=32.1
Q ss_pred cEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 7 VHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 7 ~~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
||++|+.. |+-|-..-..++|..++++|++|.+++++..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 57777766 7999999999999999999999999998553
No 173
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=84.60 E-value=4.1 Score=35.60 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcH
Q 012587 20 VNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPP 99 (460)
Q Consensus 20 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
+.-.+.+.+.+..+|-+|.|+++......+.+.... . ....-+...+..+..............+......
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~-------~--~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~ 112 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAE-------R--TGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKE 112 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH-------H--cCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHH
Confidence 334445567777789999999986555544333220 0 0111111223333322222222222221111112
Q ss_pred HHHHHHHcC---CCCccEEE-EcCCcc-hHHHHHHHhCCceEEEecch
Q 012587 100 LLKEMVSDS---KSPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTIS 142 (460)
Q Consensus 100 ~l~~~~~~~---~~~pD~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (460)
.++..+... ...||+|| .|...- .+..=|.++|||+|.+..+.
T Consensus 113 ~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 113 KLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 223333333 36899987 444332 67778999999999998764
No 174
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=83.85 E-value=5.6 Score=35.00 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=39.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
..||++.+.++..|-....-++..|.++|++|++++..-..+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 46999999999999999999999999999999998865555555544
No 175
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=83.57 E-value=6.3 Score=34.65 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCcc-chh--HHhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTEH-YYD--RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rG--H~Vt~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
||||+|++.|...-+. +|.+++.+.+ ++|.++.+.. ... ...+.. ++.+..++.....
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~-----------gIp~~~~~~~~~~--- 63 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA-----------GIPTFVLDHKDFP--- 63 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc-----------CCCEEEECccccC---
Confidence 6899999998744333 5666677654 7787765433 222 222222 3555544321000
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
+ .....+.+.+.++++ +||++|+-.+.. ....+-+.....++-++++
T Consensus 64 ----~--------~~~~~~~~~~~l~~~--~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHps 111 (200)
T PRK05647 64 ----S--------REAFDAALVEALDAY--QPDLVVLAGFMRILGPTFVSAYEGRIINIHPS 111 (200)
T ss_pred ----c--------hhHhHHHHHHHHHHh--CcCEEEhHHhhhhCCHHHHhhccCCEEEEeCc
Confidence 0 001224556667776 999999865532 2333333344445555443
No 176
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=83.56 E-value=5.4 Score=34.62 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccc-hhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 9 VAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHY-YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 9 il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
.+-+=..+.|-+.-..+|+++|.++ |+.|.+-++... .+.+.+...+ .+...-+|- +
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~---------~v~~~~~P~----D------- 82 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD---------RVDVQYLPL----D------- 82 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG---------G-SEEE-------S-------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC---------CeEEEEeCc----c-------
Confidence 3444456789999999999999998 899988886333 3344333211 122221321 1
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcch--HHHHHHHhCCceEEEecc
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSR--AIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~--~~~~A~~lgiP~v~~~~~ 141 (460)
....++..++.+ +||++|.--...| ....|++.|||.+.++--
T Consensus 83 -----------~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 83 -----------FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp -----------SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred -----------CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 335567888888 9999875444444 455677889999998653
No 177
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=83.33 E-value=6.2 Score=39.63 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCcEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCccchh---HHhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 5 DHVHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD---RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 5 ~~~~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
+|.+|+|... ..-|-..-+..|++.|+++|++|..+-...... ...... +.+..+.
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~--------------------g~~~~~l 61 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAAT--------------------GRPSRNL 61 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHHh--------------------CCCcccC
Confidence 4556777755 468999999999999999999999886532110 000000 1111110
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC------------cchHHHHHHHhCCceEEEecch
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY------------MSRAIDAAREVGVSIIYFRTIS 142 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 142 (460)
+ .. ....+.+.+.+..+..+.|++|.+.. ......+|+.++.|+|.+....
T Consensus 62 d----~~-------~~~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 62 D----SW-------MMGEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred C----ce-------eCCHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 0 00 00123444555444347899987443 1236789999999999998643
No 178
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=83.27 E-value=25 Score=29.19 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=72.5
Q ss_pred cEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccc
Q 012587 268 SVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVG 347 (460)
Q Consensus 268 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~ 347 (460)
|.|-|-+||.+ +....+++...|++.|..+-+.+- ..+..|+.+.+... . +.+...+
T Consensus 1 p~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~--------saHR~p~~l~~~~~----------~---~~~~~~~ 57 (150)
T PF00731_consen 1 PKVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVA--------SAHRTPERLLEFVK----------E---YEARGAD 57 (150)
T ss_dssp -EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE----------TTTSHHHHHHHHH----------H---TTTTTES
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEE--------eccCCHHHHHHHHH----------H---hccCCCE
Confidence 34566677765 778889999999999877644442 11234544322111 0 1111223
Q ss_pred cccccCCh----hHHHHHHHhCCceecccccccchhhH----HHHHhhhceeeeecCCcchHHHHHHHHHHHh--HhHHH
Q 012587 348 GFLTHCGW----NSTLESIVAGMPMICWPSFADQQINS----RFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV--ERKEE 417 (460)
Q Consensus 348 ~~I~HGG~----gs~~eal~~GvP~l~~P~~~DQ~~na----~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~--~~~~~ 417 (460)
+||.=.|. .++..++. -+|++.+|...++.... ..+..=-|+++..-.--+...-.-.--++|. | ++
T Consensus 58 viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d--~~ 134 (150)
T PF00731_consen 58 VIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKD--PE 134 (150)
T ss_dssp EEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT---HH
T ss_pred EEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCC--HH
Confidence 37776664 34444444 79999999876644222 2222222555444211133333333344544 5 89
Q ss_pred HHHHHHHHHHHHHHH
Q 012587 418 FMESADRMANLAKKS 432 (460)
Q Consensus 418 ~~~~a~~l~~~~~~~ 432 (460)
++++.+..++++++.
T Consensus 135 l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 135 LREKLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999998888763
No 179
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=82.91 E-value=13 Score=27.72 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEE-ecCCCCCCCCCCCCCChHHHHHHHHhhCcHHH
Q 012587 23 MLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFK-TLTDGLPRDHPRTPDKFPELVDSLNCATPPLL 101 (460)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (460)
++.+++.|.+.|++|. .| +..++.+.+. | +.+. .++. ...+ .+.+
T Consensus 2 ~~~~~~~l~~lG~~i~-AT-~gTa~~L~~~-G-----------i~~~~~~~k-i~~~-------------------~~~i 47 (90)
T smart00851 2 LVELAKRLAELGFELV-AT-GGTAKFLREA-G-----------LPVKTLHPK-VHGG-------------------ILAI 47 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ec-cHHHHHHHHC-C-----------CcceeccCC-CCCC-------------------CHHH
Confidence 4688999999999983 44 4667777653 3 4332 1111 0011 0234
Q ss_pred HHHHHcCCCCccEEEEcCC---------cchHHHHHHHhCCceEE
Q 012587 102 KEMVSDSKSPVNCIITDGY---------MSRAIDAAREVGVSIIY 137 (460)
Q Consensus 102 ~~~~~~~~~~pD~vv~D~~---------~~~~~~~A~~lgiP~v~ 137 (460)
.+++++ .+.|+||.-.. .....-+|...+||+++
T Consensus 48 ~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 48 LDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred HHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 555655 49999987432 11456778899999864
No 180
>PRK05973 replicative DNA helicase; Provisional
Probab=82.56 E-value=8.5 Score=34.78 Aligned_cols=45 Identities=22% Similarity=0.090 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
=+++...|+.|-..-.+.++...+++|..|.|++.+...+.+.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 567788889999999999999988899999999988776666544
No 181
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=82.37 E-value=6.7 Score=37.36 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHH
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRV 49 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~ 49 (460)
|||+++-..+.||+.-+.++.+.|+++ +.+|++++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 599999999999999999999999997 9999999986654433
No 182
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=81.59 E-value=45 Score=30.93 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=55.3
Q ss_pred CCceeeeecC---hHhhhccccccccccc---CChh-HHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcc
Q 012587 327 ERGCIAGWVP---QEEVLAHSAVGGFLTH---CGWN-STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 399 (460)
Q Consensus 327 ~n~~~~~~vp---~~~il~~~~~~~~I~H---GG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~ 399 (460)
.++.+.++++ ...++..+++ ++.- .|.| ++.||+++|+|++... .......+ ...+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCCCC
Confidence 5677788888 3446666776 5544 3554 4699999999996664 33333344 2322466 433237
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHH
Q 012587 400 RNIVEKAVNDLMVERKEEFMESAD 423 (460)
Q Consensus 400 ~~~l~~~i~~~l~~~~~~~~~~a~ 423 (460)
.+.+..++..++++ .+.++...
T Consensus 329 ~~~~~~~i~~~~~~--~~~~~~~~ 350 (381)
T COG0438 329 VEELADALEQLLED--PELREELG 350 (381)
T ss_pred HHHHHHHHHHHhcC--HHHHHHHH
Confidence 89999999999987 53344333
No 183
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=81.02 E-value=16 Score=30.61 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCHHHHH-HHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCC--------CCC
Q 012587 9 VAILPLPAVGHVNSML-NLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLP--------RDH 79 (460)
Q Consensus 9 il~~~~~~~Gh~~p~l-~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 79 (460)
|+.+.+...+.+..++ .+|+.|.++|++|.=+........-.. ...+....++++.. ++.
T Consensus 1 iaav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~-----------~~~m~l~dl~~G~~~~IsQ~LG~gs 69 (159)
T PF10649_consen 1 IAAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGG-----------RCDMDLRDLPSGRRIRISQDLGPGS 69 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCC-----------ccceEEEECCCCCEEEEeeccCCCC
Confidence 3455666678888866 689999999999987775221111100 22355555554322 222
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---------hHHHHHHHhCCceEEEecchhHHHH
Q 012587 80 PRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---------RAIDAAREVGVSIIYFRTISACAFW 147 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---------~~~~~A~~lgiP~v~~~~~~~~~~~ 147 (460)
.....+...+-. ....++..+.+ ++|++|.+-|.- .....|-..|||+++..+......+
T Consensus 70 ~gCrLD~~~La~-----A~~~l~~al~~---~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~~W 138 (159)
T PF10649_consen 70 RGCRLDPGALAE-----ASAALRRALAE---GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLEAW 138 (159)
T ss_pred cccccCHHHHHH-----HHHHHHHHHhc---CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHHHH
Confidence 112222222211 22344555555 899999997733 2344466889999998876554433
No 184
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=79.90 E-value=48 Score=30.27 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=45.6
Q ss_pred HHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCce-----e-----eeecChHhhhcccccccccccC-Chh
Q 012587 288 FYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGC-----I-----AGWVPQEEVLAHSAVGGFLTHC-GWN 356 (460)
Q Consensus 288 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~-----~-----~~~vp~~~il~~~~~~~~I~HG-G~g 356 (460)
+.+.+++.|.+++++.+. ..|+.....+..|+. + .++=|+-++|+.++. +|.-. ..+
T Consensus 189 l~k~l~~~g~~~lisfSR----------RTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSin 256 (329)
T COG3660 189 LVKILENQGGSFLISFSR----------RTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSIN 256 (329)
T ss_pred HHHHHHhCCceEEEEeec----------CCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhh
Confidence 446666677788877753 233333222222221 1 144589999998886 55554 468
Q ss_pred HHHHHHHhCCceecc
Q 012587 357 STLESIVAGMPMICW 371 (460)
Q Consensus 357 s~~eal~~GvP~l~~ 371 (460)
-..||...|+|+.++
T Consensus 257 M~sEAasTgkPv~~~ 271 (329)
T COG3660 257 MCSEAASTGKPVFIL 271 (329)
T ss_pred hhHHHhccCCCeEEE
Confidence 889999999999665
No 185
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=79.68 E-value=9.1 Score=38.19 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
..+.+.+++. +||+|+.+.. ...+|+++|+|++.+.
T Consensus 361 ~el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 4456667675 9999999975 5788999999998754
No 186
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=79.33 E-value=18 Score=32.85 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 21 NSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
.-.-.|+++|+++||+|+++++ .. ..+.+
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P-~y-~~~~~ 48 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMP-KY-GFIDE 48 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE--T-HHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEc-cc-hhhhh
Confidence 3456889999999999999997 33 44433
No 187
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.88 E-value=5.9 Score=31.32 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
|+++.+.+..-|-.-...|+..|+++||+|.++......+.+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 78999999999999999999999999999999965443444433
No 188
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=78.78 E-value=8.8 Score=33.08 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCe--E-EEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIK--I-TFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~--V-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
|||+|+..++. ..+..+-++|.+++|+ + .+++.++......... ..++....+.... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~---------~~~~~~~~~~~~~-------~ 61 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAI---------KNGIPAQVADEKN-------F 61 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHH---------HTTHHEEEHHGGG-------S
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccc---------cCCCCEEeccccC-------C
Confidence 69999977765 4566778899999998 4 4444433322111111 0112222221100 0
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
... ....+.+.+.++++ +||++|.-.+.. ....+-+.....++-++++
T Consensus 62 -~~~-------~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 62 -QPR-------SENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -SSH-------HHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -Cch-------HhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000 01224566777777 999999876643 4444556667777877765
No 189
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=78.52 E-value=21 Score=35.64 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
..+.+.++.. +||++|.... ...+|+++|||++.+.
T Consensus 367 ~e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 4456666776 9999999864 6788999999998764
No 190
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=78.32 E-value=9.7 Score=35.20 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=33.4
Q ss_pred ceeeeecChHhhhcccccccccccCChhHHHHHHHhCCceecccc
Q 012587 329 GCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS 373 (460)
Q Consensus 329 ~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 373 (460)
+.+.+-++-.+++.+++. +||-.+ ++-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 334477888999999996 777644 588999999999999874
No 191
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=78.16 E-value=24 Score=27.55 Aligned_cols=85 Identities=13% Similarity=0.189 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCc
Q 012587 19 HVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATP 98 (460)
Q Consensus 19 h~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (460)
+=.-++.+++.|.+.|+++. +++...+.+.+. | +.+..+... ..+ ..
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~-G-----------i~~~~v~~~-~~~------------------g~ 56 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADA-G-----------IPVRAVSKR-HED------------------GE 56 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHc-C-----------CceEEEEec-CCC------------------CC
Confidence 44568899999999999983 445777777663 3 444433211 010 12
Q ss_pred HHHHHHHHc-CCCCccEEEE--cCCc--------chHHHHHHHhCCceEEE
Q 012587 99 PLLKEMVSD-SKSPVNCIIT--DGYM--------SRAIDAAREVGVSIIYF 138 (460)
Q Consensus 99 ~~l~~~~~~-~~~~pD~vv~--D~~~--------~~~~~~A~~lgiP~v~~ 138 (460)
+++.+++++ - ++|+||. +... ....-+|-..+||+++-
T Consensus 57 ~~i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 57 PTVDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred cHHHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 445566655 4 8999986 3222 13566688999999983
No 192
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=77.76 E-value=8 Score=38.57 Aligned_cols=130 Identities=11% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHhhCC-CcEEEEEccCCCCCCCCCCCCchHHH--HHhcCCceee-eecC--hHh
Q 012587 266 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK-KSFLWVIRPDLISGKDGENQIPEELL--EATKERGCIA-GWVP--QEE 339 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~~-~~vp--~~~ 339 (460)
...++++| ..+.++.+...++.++ +.|=+.... ...+.+. ++- +|+.+. ++.+ -..
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~t----------e~s~kL~~L~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALT----------EMSSKLMSLDKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecC----------cccHHHHHHHhc-CCcEEECCcChHHHHH
Confidence 45666666 2566666666666653 455433321 1112221 223 677776 6677 388
Q ss_pred hhcccccccccccCC--hhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHH
Q 012587 340 VLAHSAVGGFLTHCG--WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEE 417 (460)
Q Consensus 340 il~~~~~~~~I~HGG--~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~ 417 (460)
++..|++-+-|+||. ..++.||+.+|+|++..=...- +...+ .. |-.. ..-+.+++.++|.++|.+ ++
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~-~~~~~~~m~~~i~~lL~d--~~ 413 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIF-EHNEVDQLISKLKDLLND--PN 413 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---Ccee-cCCCHHHHHHHHHHHhcC--HH
Confidence 999999989999987 4799999999999997754321 11233 12 4344 445789999999999997 64
Q ss_pred -HHHHHH
Q 012587 418 -FMESAD 423 (460)
Q Consensus 418 -~~~~a~ 423 (460)
++++..
T Consensus 414 ~~~~~~~ 420 (438)
T TIGR02919 414 QFRELLE 420 (438)
T ss_pred HHHHHHH
Confidence 444443
No 193
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.73 E-value=3.7 Score=35.81 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (460)
+.+||++...|+.|=+.-...+.+.|.++||+|.++.++.-.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 346899998888665555799999999999999999985533
No 194
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=77.29 E-value=34 Score=30.11 Aligned_cols=143 Identities=10% Similarity=0.035 Sum_probs=78.1
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhc-CCceeeeecChHhhhcc
Q 012587 265 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATK-ERGCIAGWVPQEEVLAH 343 (460)
Q Consensus 265 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~~~~vp~~~il~~ 343 (460)
.++.++.|..|.++ ...++.|...|.++.++.. ...+.+.+..+ .++..........-+..
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-----------~~~~~l~~l~~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-----------ELTENLVKLVEEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-----------CCCHHHHHHHhCCCEEEEecCCChhhcCC
Confidence 36788889888775 4455666667877665542 12222222222 23444444445566777
Q ss_pred cccccccccCChhHHHHHHH----hCCceecccccccchhhHH-----HHHhhhce--eeeec--CCcchHHHHHHHHHH
Q 012587 344 SAVGGFLTHCGWNSTLESIV----AGMPMICWPSFADQQINSR-----FVGEVWKL--GLDIK--DLCDRNIVEKAVNDL 410 (460)
Q Consensus 344 ~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~-----~~~e~~G~--g~~~~--~~~~~~~l~~~i~~~ 410 (460)
+++ +|.--+...+.+.++ .++++-+ .|.+..+. .+ ++-++ |++-. ...-+..|++.|..+
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G~sP~la~~lr~~ie~~ 143 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDGASPKLAKKIRDELEAL 143 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCCCChHHHHHHHHHHHHH
Confidence 786 777666555555544 4554433 34433332 23 22233 33332 134446678888877
Q ss_pred HhHhHHHHHHHHHHHHHHHHHH
Q 012587 411 MVERKEEFMESADRMANLAKKS 432 (460)
Q Consensus 411 l~~~~~~~~~~a~~l~~~~~~~ 432 (460)
+...-..+-+.+.++++.+++.
T Consensus 144 ~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 144 YDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHh
Confidence 7532245666777777777764
No 195
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=77.02 E-value=33 Score=31.09 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=57.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
+++|+++-. ..=...|++.|...++.+++.+....-....+..+. .. ...
T Consensus 2 ~~~ilvlGG-----T~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~-------------~~------------~~G 51 (257)
T COG2099 2 MMRILLLGG-----TSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP-------------VR------------VGG 51 (257)
T ss_pred CceEEEEec-----cHHHHHHHHHhhccCccEEEEEcccccccchhccCC-------------ee------------ecC
Confidence 457776532 233578999999999888888764432222221110 00 001
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEE
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYF 138 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~ 138 (460)
+ ...+.+.+++++. +.|+||=-++-+ -+..+|+..|||++.+
T Consensus 52 ~---------l~~e~l~~~l~e~--~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 52 F---------LGAEGLAAFLREE--GIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred c---------CCHHHHHHHHHHc--CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1 1347788888886 999988444433 3678899999999995
No 196
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=76.87 E-value=26 Score=34.81 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=53.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChH
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
|++++..+. + .+.+++.|.+-|-+|..++++.......+..- ..+.- . +.... ...++.
T Consensus 282 kv~v~g~~~--~---~~~la~~L~elGmevv~~~t~~~~~~~~~~~~---------~~l~~--~--~~~v~---~~~~~~ 340 (416)
T cd01980 282 RVLVSGYEG--N---ELLVARLLIESGAEVPYVSTSIPKTSLSAPDY---------EWLSA--L--GVEVR---YRKSLE 340 (416)
T ss_pred eEEEECCCc--h---hHHHHHHHHHcCCEEEEEecCCCChhhhHHHH---------HHHHh--c--CCccc---cCCCHH
Confidence 666655444 3 66699999999999999988532111111100 00000 0 00000 011111
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
...+++++. +||++|.... +..+|+++|||.+.+..
T Consensus 341 ------------~~~~~~~~~--~pDl~Ig~s~---~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 341 ------------DDIAAVEEY--RPDLAIGTTP---LVQYAKEKGIPALYYTN 376 (416)
T ss_pred ------------HHHHHHhhc--CCCEEEeCCh---hhHHHHHhCCCEEEecC
Confidence 113444555 9999998843 77889999999999654
No 197
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=76.65 E-value=3.5 Score=35.67 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCccchhHHh
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~ 50 (460)
|+||++...|+.| .+=...+.+.|.+ .||+|.++.++...+.+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 5699999999877 7779999999999 599999999955444443
No 198
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=76.58 E-value=18 Score=35.98 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc----chhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH----YYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
|+.++..+.. .+.+++.|.+-|-+|..+++.. +.+...+... .+..... ..
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~---------------~~~~~v~-----~~ 341 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLE---------------MLGVEVK-----YR 341 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHH---------------hcCCCce-----ec
Confidence 7777776665 8899999999999999987642 1111111100 0000000 00
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
.++ .+.+ +.+++. +||++|.... +..+|+++|||.+.+.
T Consensus 342 ~dl-----------~~~~-~~l~~~--~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASL-----------EDDM-EAVLEF--EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred cCH-----------HHHH-HHHhhC--CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 111 1122 333555 9999999844 6778999999999964
No 199
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=76.51 E-value=45 Score=28.05 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=58.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe---Cc--cchhHHhhccccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN---TE--HYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
-|.+.+.++.|-....+.+|-....+|++|.|+- +. .....+.+. .+++.+.....++.-..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~----------l~~v~~~~~g~~~~~~~--- 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER----------LPNIEIHRMGRGFFWTT--- 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh----------CCCcEEEECCCCCccCC---
Confidence 5778888899999999999999999999999943 31 111122222 34577777765432211
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS 122 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~ 122 (460)
.+...-.... .......++.+.. .++|+||-|-...
T Consensus 71 -~~~~~~~~~a-~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 71 -ENDEEDIAAA-AEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred -CChHHHHHHH-HHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 1111111111 1233444555555 4999999996643
No 200
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.42 E-value=73 Score=30.43 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=74.1
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc--hhHHhhccccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY--YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
++.|+.++..|..|+--++--=|..|++.|.+|.+++.-+. .+.+.. .+++++++++.. +..+. .
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~-----------hprI~ih~m~~l-~~~~~-~ 77 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN-----------HPRIRIHGMPNL-PFLQG-G 77 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc-----------CCceEEEeCCCC-cccCC-C
Confidence 45699999999999999999999999999999999986332 233322 567999998752 21110 1
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEc-CCcchHHHHHH----HhCCceEEEecchhHH
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITD-GYMSRAIDAAR----EVGVSIIYFRTISACA 145 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D-~~~~~~~~~A~----~lgiP~v~~~~~~~~~ 145 (460)
..-+.-.++.++..+ ..+-.++-. .++|.|+.- .-+.....++. ..|...|.=+....+.
T Consensus 78 p~~~~l~lKvf~Qfl-~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 78 PRVLFLPLKVFWQFL-SLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred chhhhhHHHHHHHHH-HHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 111122223333211 122223322 488888654 33334444443 4477777766665554
No 201
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=76.25 E-value=13 Score=31.81 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHH-HhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCC-------------CCCC-----C
Q 012587 18 GHVNSMLNLAELL-GHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD-------------GLPR-----D 78 (460)
Q Consensus 18 Gh~~p~l~La~~L-~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-----~ 78 (460)
+.+.-.+..|+.| .+.|.+|.+..+ .+++.+.+... +.+..++. .... +
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~~-----------iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~ 84 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHVS-----------IPVVEIPISGFDILRALAKAKKYGPKIAVVG 84 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC-S-----------S-EEEE---HHHHHHHHHHCCCCTSEEEEEE
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhCC-----------CCEEEECCCHhHHHHHHHHHHhcCCcEEEEe
Confidence 6677889999999 889999999887 77888888754 33333320 0000 0
Q ss_pred CCCCCCChHHHHHHHHhh-------CcHHHHHHHHcC-CCCccEEEEcCCcchHHHHHHHhCCceEEEecch
Q 012587 79 HPRTPDKFPELVDSLNCA-------TPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTIS 142 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~-~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 142 (460)
......+...+...+... ....++..++.+ ..+.|+||.+.. ...+|+++|+|++.+.+..
T Consensus 85 ~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 85 YPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp ESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred cccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 001122223222222111 244555555555 458999999964 5788999999999987753
No 202
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=75.34 E-value=3.6 Score=35.53 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHH
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (460)
|+||++...|+.|=+. ...+.+.|+++|++|.++.++. ..++
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~-A~~f 42 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKA-ATKF 42 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChh-HHHH
Confidence 5689999999877665 8999999999999999999855 4443
No 203
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=75.32 E-value=10 Score=35.88 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=26.0
Q ss_pred CCccEEE-EcCCcc-hHHHHHHHhCCceEEEecchh
Q 012587 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 110 ~~pD~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (460)
..||+|| .|...- .+..=|.++|||+|.+.-+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 4799886 555433 688889999999999887644
No 204
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=75.20 E-value=10 Score=38.76 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCceeeeecCh---HhhhcccccccccccC---ChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcch
Q 012587 327 ERGCIAGWVPQ---EEVLAHSAVGGFLTHC---GWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 400 (460)
Q Consensus 327 ~n~~~~~~vp~---~~il~~~~~~~~I~HG---G~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~ 400 (460)
..+.+.++... ..++..+.+ +|.=+ |.+|..||+.+|+|+| .......+ +...=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe---CCH
Confidence 45666677773 456666666 77766 6789999999999999 33334455 343445555 488
Q ss_pred HHHHHHHHHHHhH
Q 012587 401 NIVEKAVNDLMVE 413 (460)
Q Consensus 401 ~~l~~~i~~~l~~ 413 (460)
.+|.+++..+|.+
T Consensus 476 ~~l~~al~~~L~~ 488 (519)
T TIGR03713 476 SELLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHHHhC
Confidence 8999999999986
No 205
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=74.70 E-value=11 Score=37.41 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
++||||++-.+++-| +|++.|++.++-..+++.|.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 468999999998776 689999999866666666565
No 206
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=74.65 E-value=12 Score=33.80 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=52.2
Q ss_pred CCcEEEEEecCcc---cCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcC----Cce-eeeecC-
Q 012587 266 KQSVIYVSFGSIA---VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKE----RGC-IAGWVP- 336 (460)
Q Consensus 266 ~~~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----n~~-~~~~vp- 336 (460)
+++.|.+..|+.. ..+.+.+..+++.+.+.++++++..+.. +. .....+...+ ++. +.+-..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~l 174 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE--------EQ-EKEIADQIAAGLQNPVINLAGKTSL 174 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH--------HH-HHHHHHHHHTTHTTTTEEETTTS-H
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch--------HH-HHHHHHHHHHhcccceEeecCCCCH
Confidence 5677888888765 3466778899999988886765544211 00 0111111222 222 222222
Q ss_pred --hHhhhcccccccccccCChhHHHHHHHhCCceecc
Q 012587 337 --QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 371 (460)
Q Consensus 337 --~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 371 (460)
...++.++++ +|+. ..|.++=|.+.|+|+|++
T Consensus 175 ~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 175 RELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 3577788885 6665 689999999999999998
No 207
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=74.40 E-value=32 Score=27.02 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=57.4
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHH
Q 012587 11 ILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELV 90 (460)
Q Consensus 11 ~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
|++.... +-.-++.+++.|.+.|.+|. +++..++.+.+. | +.+..+.+....+. .
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~-g-----------i~~~~v~~~~~~~~---~------- 58 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN-G-----------IPVTPVAWPSEEPQ---N------- 58 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc-C-----------CCceEeeeccCCCC---C-------
Confidence 3344433 55668899999999999883 455778877753 3 33333211000000 0
Q ss_pred HHHHhhCcHHHHHHHHcCCCCccEEEEcCC---------cchHHHHHHHhCCceEE
Q 012587 91 DSLNCATPPLLKEMVSDSKSPVNCIITDGY---------MSRAIDAAREVGVSIIY 137 (460)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~---------~~~~~~~A~~lgiP~v~ 137 (460)
-.+.+.+++++ .++|+||.-.. .....-.|-.+|||+++
T Consensus 59 ------~~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 59 ------DKPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ------CchhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 01456667776 49999987432 23467779999999975
No 208
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=74.06 E-value=5.4 Score=33.71 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=60.5
Q ss_pred EEEEEcCCCCCCHHH----HHHHHHHHHhC-CCeEEEEeCcc---chhHHhhccccccccccCCCCc-eEEecCCCCCCC
Q 012587 8 HVAILPLPAVGHVNS----MLNLAELLGHA-GIKITFLNTEH---YYDRVIRHSSDAFSRYMQIPGF-QFKTLTDGLPRD 78 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p----~l~La~~L~~r-GH~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (460)
+|+++.--..|.++| .+..|+.|++. |.+|+.++-.. ..+.+.+..+ ..+. +.+.+.......
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~--------~~G~d~v~~~~~~~~~~ 72 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALA--------KYGADKVYHIDDPALAE 72 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHH--------STTESEEEEEE-GGGTT
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhh--------hcCCcEEEEecCccccc
Confidence 355555555666666 57889999985 78888887542 2223222111 0112 233332110000
Q ss_pred CCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecc
Q 012587 79 HPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~ 141 (460)
.+.. .....+.+++++. +||+|+...... .+..+|.+||.|++.-...
T Consensus 73 -----~~~~--------~~a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~ 123 (164)
T PF01012_consen 73 -----YDPE--------AYADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTD 123 (164)
T ss_dssp -----C-HH--------HHHHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEE
T ss_pred -----cCHH--------HHHHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEE
Confidence 0111 1235556677775 999999886554 5788899999999996553
No 209
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=73.83 E-value=33 Score=34.23 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
.||++...+ ...+.+++.|.+.|-+|..+......+...+. ..+.. ...+
T Consensus 312 krvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~-----------------------~~~~~-~~~D- 361 (432)
T TIGR01285 312 KKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL-----------------------PVETV-VIGD- 361 (432)
T ss_pred CEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC-----------------------CcCcE-EeCC-
Confidence 477766533 46788888899999998877764432221110 00000 0011
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
...+.+++++. +||+|+.+.. ...+|+++|||++.+.
T Consensus 362 -----------~~~l~~~i~~~--~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 362 -----------LEDLEDLACAA--GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred -----------HHHHHHHHhhc--CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 13456777776 9999999864 5789999999999853
No 210
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=73.81 E-value=4.7 Score=39.39 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=63.8
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEe-CccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLN-TEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 8 ~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
+|+|... .+.|-..-++.|.++|++||++|.=+= +|++. +-.|+..-.+.+..+.+.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYI------------------DP~~H~~atG~~srNLD~--- 60 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYI------------------DPGYHTAATGRPSRNLDS--- 60 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCcc------------------CchhhhHhhCCccCCCch---
Confidence 4555444 588999999999999999999997543 22221 112333323333333211
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC------------cchHHHHHHHhCCceEEEecchhHHH
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY------------MSRAIDAAREVGVSIIYFRTISACAF 146 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~------------~~~~~~~A~~lgiP~v~~~~~~~~~~ 146 (460)
++- ..+.+++++.......|+.|.+.. ...+..+|+.+|+|+|.+........
T Consensus 61 -------~mm-~~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~ 125 (451)
T COG1797 61 -------WMM-GEEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSR 125 (451)
T ss_pred -------hhc-CHHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhH
Confidence 111 223344444443334455443321 23578999999999999988765543
No 211
>PRK14098 glycogen synthase; Provisional
Probab=73.17 E-value=5.6 Score=40.45 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=29.2
Q ss_pred CCcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLP------AVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~------~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+||||++++.= +.|=..-.-+|.++|+++||+|.++.+
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P 47 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMP 47 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcC
Confidence 57999998741 333344456788999999999999987
No 212
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=72.37 E-value=43 Score=25.93 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhC
Q 012587 18 GHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCAT 97 (460)
Q Consensus 18 Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (460)
.+-.-++.+++.|.+.|+++. +++..++.+.+. | +.+..+.... . .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~-g-----------i~~~~v~~~~-~-------------------~ 55 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA-G-----------IPVEVVNKVS-E-------------------G 55 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc-C-----------CeEEEEeecC-C-------------------C
Confidence 356678899999999999983 445777777653 2 4443332110 0 2
Q ss_pred cHHHHHHHHcCCCCccEEEEcCC-------cchHHHHHHHhCCceEE
Q 012587 98 PPLLKEMVSDSKSPVNCIITDGY-------MSRAIDAAREVGVSIIY 137 (460)
Q Consensus 98 ~~~l~~~~~~~~~~pD~vv~D~~-------~~~~~~~A~~lgiP~v~ 137 (460)
.+.+.+++++- ++|+||.-.- ....+-.|-..|||+++
T Consensus 56 ~~~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 RPNIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred chhHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 25566777764 9999987432 23567779999999996
No 213
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=72.33 E-value=4.3 Score=36.59 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCCCHHHH------------HHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPLPAVGHVNSM------------LNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~------------l~La~~L~~rGH~Vt~~~~ 42 (460)
|||++.+.|++=.+.|. .+||++|.++||+|+++..
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEEC
Confidence 57888888777776663 3889999999999999975
No 214
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=72.19 E-value=21 Score=36.70 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=46.7
Q ss_pred ChHhhhcccccccccc-cCCh-hHHHHHHHhCCceecccccc-cchhhHHHHHhhh-ceeeeec-C-----CcchHHHHH
Q 012587 336 PQEEVLAHSAVGGFLT-HCGW-NSTLESIVAGMPMICWPSFA-DQQINSRFVGEVW-KLGLDIK-D-----LCDRNIVEK 405 (460)
Q Consensus 336 p~~~il~~~~~~~~I~-HGG~-gs~~eal~~GvP~l~~P~~~-DQ~~na~~~~e~~-G~g~~~~-~-----~~~~~~l~~ 405 (460)
+..+++..|++.++=+ +=|+ -+..||+++|+|+|+....+ .... ..+.... ..|+.+. + ..+.+.|.+
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 4678888899833322 4554 49999999999999987642 2221 2221111 2466664 1 235577788
Q ss_pred HHHHHHh
Q 012587 406 AVNDLMV 412 (460)
Q Consensus 406 ~i~~~l~ 412 (460)
++.++++
T Consensus 545 ~m~~~~~ 551 (590)
T cd03793 545 YMYEFCQ 551 (590)
T ss_pred HHHHHhC
Confidence 8888775
No 215
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=71.76 E-value=1.9 Score=37.33 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCCHHHH------------HHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSM------------LNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~------------l~La~~L~~rGH~Vt~~~~~~ 44 (460)
.||++.+.|++=.+.|. .+||+++..+||+|+++.++.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 47777777776666653 589999999999999999853
No 216
>PRK06988 putative formyltransferase; Provisional
Probab=71.30 E-value=42 Score=31.83 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
||||+|+..+. -.+..-++|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 57999996654 3456677888899998877764
No 217
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=70.80 E-value=7.9 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=32.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.-++++..|...|...+-.+|+.|.++|..|..+-.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 578999999999999999999999999999987643
No 218
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=70.62 E-value=9.5 Score=30.42 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
||++.+.++..|-.-..-++.-|+.+|++|.+.+..-..+.+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~ 45 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEA 45 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 689999999999999999999999999999999975444544433
No 219
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=70.30 E-value=18 Score=33.17 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=33.2
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 10 AILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 10 l~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
++..-|+.|...-..++|..++++|++|.++..+. ...+...
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~-~~sl~~~ 45 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP-AHSLSDS 45 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC-cccHHHH
Confidence 44445799999999999999999999999998754 3455443
No 220
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=70.15 E-value=8.6 Score=32.98 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
|||.++.-. |++ --.|.++...|||+||-++..
T Consensus 1 mKIaiIgAs--G~~--Gs~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGAS--GKA--GSRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecC--chh--HHHHHHHHHhCCCeeEEEEeC
Confidence 578776543 333 236789999999999999863
No 221
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=69.62 E-value=6.9 Score=38.07 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=59.9
Q ss_pred cCCceee-eecChHhhhcccccccccccCChhHHHHHHHhCCceecccccccchhhHHHHH---hhhceeeeecCCcchH
Q 012587 326 KERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVG---EVWKLGLDIKDLCDRN 401 (460)
Q Consensus 326 ~~n~~~~-~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~---e~~G~g~~~~~~~~~~ 401 (460)
.+++..+ +..+..++|..+++ +||=- .+.+.|.++.++|++......|.....+.+. +...-|... -+.+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~---~~~~ 324 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV---YNFE 324 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE---SSHH
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee---CCHH
Confidence 3566655 55567899999998 99986 5589999999999998866555542221110 112333333 5789
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 012587 402 IVEKAVNDLMVERKEEFMESADRMANLAKK 431 (460)
Q Consensus 402 ~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~ 431 (460)
+|.++|..++++. ..++++.+++.+++-.
T Consensus 325 eL~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 325 ELIEAIENIIENP-DEYKEKREKFRDKFFK 353 (369)
T ss_dssp HHHHHHTTHHHHH-HHTHHHHHHHHHHHST
T ss_pred HHHHHHHhhhhCC-HHHHHHHHHHHHHhCC
Confidence 9999999998851 4455666666666644
No 222
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.50 E-value=10 Score=31.00 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
++.||++.+.+..||-...--+++.|+..|.+|...+.-..-+.+..
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~ 57 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVR 57 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHH
Confidence 56899999999999999999999999999999999875333344433
No 223
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=69.28 E-value=39 Score=33.02 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCcEEEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILP-LPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~-~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.++||+|+- .|..|. .+|+.|+++||+|+++..
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCC
Confidence 357899986 788775 689999999999999985
No 224
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=69.22 E-value=61 Score=28.56 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=75.1
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHH-hcCCceeeeecChHhhhccc
Q 012587 266 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEA-TKERGCIAGWVPQEEVLAHS 344 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~vp~~~il~~~ 344 (460)
+++++.|..|... ..-+..|.+.|.++.++... ..+.+.+. ...++....--.+...+..+
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~-----------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEE-----------LESELTLLAEQGGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCC-----------CCHHHHHHHHcCCEEEEeCCCCHHHhCCc
Confidence 5788888888665 34456666678887665421 11222211 12355544222234456777
Q ss_pred ccccccccCChhHH-----HHHHHhCCceecc--cccccchhhHHHHHhhhce--eeeec--CCcchHHHHHHHHHHHhH
Q 012587 345 AVGGFLTHCGWNST-----LESIVAGMPMICW--PSFADQQINSRFVGEVWKL--GLDIK--DLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 345 ~~~~~I~HGG~gs~-----~eal~~GvP~l~~--P~~~DQ~~na~~~~e~~G~--g~~~~--~~~~~~~l~~~i~~~l~~ 413 (460)
++ +|..-|...+ .+|-..|+|+-++ |-..| +.....+ ++-++ |++-. ...-+..|++.|.+++.+
T Consensus 71 ~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 71 FL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGGAAPVLARLLRERIETLLPP 146 (205)
T ss_pred EE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCCCCcHHHHHHHHHHHHhcch
Confidence 76 6666666533 3444568887333 32222 2222223 22223 33332 234446678888888762
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012587 414 RKEEFMESADRMANLAKKS 432 (460)
Q Consensus 414 ~~~~~~~~a~~l~~~~~~~ 432 (460)
.-..+-+...++++.+++.
T Consensus 147 ~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 147 SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 2244555666666666653
No 225
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=69.13 E-value=49 Score=27.72 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 012587 13 PLPAVGHVNSMLNLAELLGHAGIKITFL 40 (460)
Q Consensus 13 ~~~~~Gh~~p~l~La~~L~~rGH~Vt~~ 40 (460)
+.+.-|-..-.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4467888899999999999999999997
No 226
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=69.12 E-value=39 Score=33.70 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
..+.++++.. +||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 4567777776 9999999975 5788999999998754
No 227
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=68.92 E-value=59 Score=32.74 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
..+.+++++. +||++|.... ...+|.++|||++.++
T Consensus 385 ~e~~~~i~~~--~pDl~ig~~~---~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 385 RELLKLLLEY--KADLLIAGGK---ERYTALKLGIPFCDIN 420 (456)
T ss_pred HHHHHHHhhc--CCCEEEEccc---hHHHHHhcCCCEEEcc
Confidence 4556777776 9999998743 5777889999998853
No 228
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=68.81 E-value=45 Score=29.59 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=27.2
Q ss_pred EEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 012587 9 VAILP-LPAVGHVNSMLNLAELLGHAGIKITFLN 41 (460)
Q Consensus 9 il~~~-~~~~Gh~~p~l~La~~L~~rGH~Vt~~~ 41 (460)
|++.. ....|-..-++.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 44443 3578999999999999999999998875
No 229
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=68.70 E-value=65 Score=26.50 Aligned_cols=100 Identities=8% Similarity=0.136 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
.+|+|++... ..+-.-++.+++.|.+. |+++ ++ ++...+.+.+..| +.+..+-.+ +.+
T Consensus 3 ~~~~v~lsv~--d~dK~~l~~~a~~l~~ll~Gf~l-~A-T~gTa~~L~~~~G-----------i~v~~vi~~-~~g---- 62 (142)
T PRK05234 3 ARKRIALIAH--DHKKDDLVAWVKAHKDLLEQHEL-YA-TGTTGGLIQEATG-----------LDVTRLLSG-PLG---- 62 (142)
T ss_pred cCcEEEEEEe--ccchHHHHHHHHHHHHHhcCCEE-EE-eChHHHHHHhccC-----------CeeEEEEcC-CCC----
Confidence 3568877774 45667899999999999 9995 34 4477777776434 443333100 000
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcC--Ccc--------hHHHHHHHhCCceEEEec
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDG--YMS--------RAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~--~~~--------~~~~~A~~lgiP~v~~~~ 140 (460)
..+++.+++++ .+.|+||.-. ... ...-.|-..+||+++-..
T Consensus 63 --------------g~~~i~~~I~~--g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 63 --------------GDQQIGALIAE--GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred --------------CchhHHHHHHc--CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 12455666666 4999998732 221 345668899999998443
No 230
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=68.64 E-value=19 Score=35.77 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=25.0
Q ss_pred HHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEE
Q 012587 102 KEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (460)
Q Consensus 102 ~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 138 (460)
.+.+++. +||+||.... ...+|+++|||++.+
T Consensus 351 ~~~~~~~--~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 351 FEILEML--KPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHhc--CCCEEEecCc---cchhhhhcCCCEEec
Confidence 3445665 9999999865 346899999999986
No 231
>PRK14099 glycogen synthase; Provisional
Probab=68.35 E-value=8.2 Score=39.19 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=28.8
Q ss_pred CCcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLP------AVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~------~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+.|||++++.= +.|=..-.-+|.++|+++||+|.++.+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P 45 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVP 45 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 56899998741 334444456788999999999999987
No 232
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.26 E-value=34 Score=31.20 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
|++|+++..=+.| ..|++.|.++|+.|++.+...... .+. .+.... .+.
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~--~~~-----------~~~~v~-------~G~------ 50 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG--PAD-----------LPGPVR-------VGG------ 50 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC--ccc-----------CCceEE-------ECC------
Confidence 5688887665554 578999999999998877634211 110 011111 000
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEEe
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFR 139 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~ 139 (460)
+. ..+.+.+++++- ++++||=-++-+ -+..+|+.+|||++.+.
T Consensus 51 l~---------~~~~l~~~l~~~--~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 51 FG---------GAEGLAAYLREE--GIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CC---------CHHHHHHHHHHC--CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 00 235667777775 999987333322 46788999999999964
No 233
>PRK05920 aromatic acid decarboxylase; Validated
Probab=67.98 E-value=7.5 Score=34.21 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
++||++...|+.+= +=.+.+.+.|.+.||+|.++.+..-.+.+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 46899888887555 688999999999999999999955444443
No 234
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=67.93 E-value=23 Score=38.45 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=61.9
Q ss_pred Hhhhcccccccccc---cCChh-HHHHHHHhCCc---eecccccccchhhHHHHHhhhc-eeeeecCCcchHHHHHHHHH
Q 012587 338 EEVLAHSAVGGFLT---HCGWN-STLESIVAGMP---MICWPSFADQQINSRFVGEVWK-LGLDIKDLCDRNIVEKAVND 409 (460)
Q Consensus 338 ~~il~~~~~~~~I~---HGG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~~~e~~G-~g~~~~~~~~~~~l~~~i~~ 409 (460)
.+++..+++ |+. .-|.| +..|++++|+| +++++-.. ..+. .+| -|+.+ ...+.+.++++|.+
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allV-nP~D~~~lA~AI~~ 439 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLV-NPWNITEVSSAIKE 439 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEE-CCCCHHHHHHHHHH
Confidence 466778887 554 34775 77899999999 44444221 1121 133 35666 56799999999999
Q ss_pred HHh-HhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 012587 410 LMV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 453 (460)
Q Consensus 410 ~l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 453 (460)
+|+ + ..+-+++.+++.+.+++. ....-++++++.|...
T Consensus 440 aL~m~-~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 440 ALNMS-DEERETRHRHNFQYVKTH-----SAQKWADDFMSELNDI 478 (797)
T ss_pred HHhCC-HHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHH
Confidence 998 4 133445555555555542 2344566677766554
No 235
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=67.90 E-value=31 Score=31.46 Aligned_cols=94 Identities=22% Similarity=0.403 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
|||+++..=+.| ..|++.|.++|+ |++-+..+....+.+.. .+..... .+. +
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~---------~~~~~v~-------~G~------l 52 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE---------LPGLEVR-------VGR------L 52 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc---------cCCceEE-------ECC------C
Confidence 578887655544 579999999999 66555433322332110 0011111 000 0
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEEe
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFR 139 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~ 139 (460)
. ..+.+.+++++- ++|+||=-++-+ -+..+|+.+|||++.+.
T Consensus 53 g---------~~~~l~~~l~~~--~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 53 G---------DEEGLAEFLREN--GIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred C---------CHHHHHHHHHhC--CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 0 235667777775 999988433332 46888999999999963
No 236
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=67.82 E-value=8.9 Score=28.98 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcHHHH
Q 012587 23 MLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLLK 102 (460)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (460)
++.+|+.|.+.|+++ ++++..++.+.+. | ++...+-........ ..+. .++.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~-G-----------i~~~~v~~~~~~~~~-~~g~-------------~~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH-G-----------IEVTEVVNKIGEGES-PDGR-------------VQIM 53 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT-T-------------EEECCEEHSTG-G-GTHC-------------HHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc-C-----------CCceeeeeecccCcc-CCch-------------hHHH
Confidence 578999999999665 5566778888754 3 443333211111000 0000 1566
Q ss_pred HHHHcCCCCccEEEEcCCcc---------hHHHHHHHhCCceEE
Q 012587 103 EMVSDSKSPVNCIITDGYMS---------RAIDAAREVGVSIIY 137 (460)
Q Consensus 103 ~~~~~~~~~pD~vv~D~~~~---------~~~~~A~~lgiP~v~ 137 (460)
+++++- +.|+||...... ....+|...+||+++
T Consensus 54 ~~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 54 DLIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 777774 999998765433 236678899999874
No 237
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=67.19 E-value=56 Score=27.57 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=21.5
Q ss_pred cccccCCh------hHHHHHHHhCCceecccc
Q 012587 348 GFLTHCGW------NSTLESIVAGMPMICWPS 373 (460)
Q Consensus 348 ~~I~HGG~------gs~~eal~~GvP~l~~P~ 373 (460)
++++|.|- +.+.+|...++|+|++.-
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 48888774 478899999999999964
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.85 E-value=10 Score=34.77 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=41.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
...++|.-.++.|-..=..+||.+|.++|+.|+|++.++....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 45788888899999999999999999889999999998887777654
No 239
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=66.62 E-value=50 Score=32.28 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=61.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC-CeEEEEeCc-cchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAG-IKITFLNTE-HYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rG-H~Vt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
|+||+++-.|..|+ .+|+-|+++| ++|++++.. ..++++....+ ..+++..++-.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~--------- 57 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDAA--------- 57 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEeccc---------
Confidence 67999998877765 5789999999 999999863 44555544321 12444444310
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchhH
Q 012587 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISAC 144 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~ 144 (460)
-.+.+.+++++ +|+||.=.-.+ ..+.+|-+.|++++-++.....
T Consensus 58 -------------d~~al~~li~~----~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 58 -------------DVDALVALIKD----FDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred -------------ChHHHHHHHhc----CCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch
Confidence 22455666655 27766443322 3555677888888876655433
No 240
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=65.96 E-value=77 Score=26.97 Aligned_cols=94 Identities=9% Similarity=0.111 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCccc-hhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcHHH
Q 012587 23 MLNLAELLGHAGIKITFLNTEHY-YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLL 101 (460)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (460)
+-.|.+...++|..|.++++.+- .+.+.+.... ++|++.+.....++-.. ...+.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~------~yP~l~ivg~~~g~f~~-----------------~~~~~i 93 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRR------RYPGLRIVGYHHGYFDE-----------------EEEEAI 93 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH------HCCCeEEEEecCCCCCh-----------------hhHHHH
Confidence 44566667778999999986332 2222222111 17778888765432211 123455
Q ss_pred HHHHHcCCCCccEEEEcCCcc----hHHHHHHHhCCceEEEecch
Q 012587 102 KEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIYFRTIS 142 (460)
Q Consensus 102 ~~~~~~~~~~pD~vv~D~~~~----~~~~~A~~lgiP~v~~~~~~ 142 (460)
.+.+++. +||+|+...-++ +.....+.++.+ +.+....
T Consensus 94 ~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~ 135 (172)
T PF03808_consen 94 INRINAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGG 135 (172)
T ss_pred HHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECc
Confidence 5566665 999999987766 677778888888 4444443
No 241
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=65.93 E-value=85 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=28.1
Q ss_pred cEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.|++.++. |+.|--.-.+.||.+|++.|++|.++-.
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 46655555 4677777788899999999999999965
No 242
>PRK09620 hypothetical protein; Provisional
Probab=65.47 E-value=8.4 Score=34.68 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCCHHHH------------HHHHHHHHhCCCeEEEEeCc
Q 012587 6 HVHVAILPLPAVGHVNSM------------LNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~------------l~La~~L~~rGH~Vt~~~~~ 43 (460)
.+||++.+.|++=.+.|. ..||++|.++|++|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458888888876665553 48999999999999999763
No 243
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=65.26 E-value=12 Score=34.38 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=32.3
Q ss_pred cHHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEEecc
Q 012587 98 PPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 98 ~~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (460)
...+...+++. .||+|++...+. -+..+|+.||+|+++....
T Consensus 101 A~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 101 ASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34556666666 799999876554 4788999999999997664
No 244
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=64.97 E-value=28 Score=31.21 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=32.9
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 012587 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (460)
Q Consensus 8 ~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (460)
=|.|++. |+-|-.--.+.||.+|+++|-.|+++=.+++.
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQ 42 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4555555 79999999999999999999999999976653
No 245
>PRK06849 hypothetical protein; Provisional
Probab=64.95 E-value=13 Score=36.60 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+.+++|++.... ..-.+.++++|.++||+|+++....
T Consensus 2 ~~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346799888533 3368999999999999999998743
No 246
>PRK08506 replicative DNA helicase; Provisional
Probab=64.84 E-value=29 Score=35.12 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
-=|++...|+.|-..-.+.+|....+.|+.|.|++.+...+.+...
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~R 238 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLR 238 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHH
Confidence 3577888899999999999999998899999999987776666543
No 247
>PRK12342 hypothetical protein; Provisional
Probab=64.78 E-value=12 Score=34.23 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEEecc
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (460)
..+...++.. .||+|++...+. -+..+|+.||+|+++....
T Consensus 99 ~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 99 KALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 4455666665 799999876655 3899999999999997654
No 248
>PRK05595 replicative DNA helicase; Provisional
Probab=64.78 E-value=21 Score=35.78 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCccchhHHhhc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
=|++...|+.|-..-.+.+|..++ ++|+.|.|++.+...+.+...
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence 467788899999999999998876 569999999987666655443
No 249
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=64.69 E-value=35 Score=34.28 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=62.1
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChH
Q 012587 9 VAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (460)
Q Consensus 9 il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
|+|... ..-|-..-+..|++.|+++|++|..+=+.... +.. .+ +..-.+.+..+. +.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~--~D~-------------~~--~~~~~g~~~~~l----d~- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY--IDP-------------MF--HTQATGRPSRNL----DS- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC--CCH-------------HH--HHHHhCCchhhC----Cc-
Confidence 455544 45788999999999999999999998642210 000 00 000001111110 00
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCC-------c-----chHHHHHHHhCCceEEEecch
Q 012587 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY-------M-----SRAIDAAREVGVSIIYFRTIS 142 (460)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~-------~-----~~~~~~A~~lgiP~v~~~~~~ 142 (460)
+ . ...+.+.+.+..+..+.|++|.+.. . .....+|+.++.|+|.+....
T Consensus 60 -~----~-~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 60 -F----F-MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred -c----c-CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 0 0 1234455555554347899996654 1 136789999999999998765
No 250
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.65 E-value=17 Score=31.89 Aligned_cols=48 Identities=15% Similarity=0.019 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhcc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHS 53 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 53 (460)
..||++.+.++..|-....-++..|..+|.+|++++..-..+.+.+..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~ 131 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV 131 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH
Confidence 359999999999999999999999999999999999766666665543
No 251
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=64.58 E-value=41 Score=25.78 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=50.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
|||+++-.|++-| +||..|.+--.--.+++.|.+.- +.+. -....+ ..
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G-~~~~-------------~~~~~~----~~--------- 48 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPG-TAEL-------------GKNVPI----DI--------- 48 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TT-GGGT-------------SEEE-S-----T---------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHH-HHhh-------------ceecCC----CC---------
Confidence 7999999999888 58899987532223333334311 1110 011111 00
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEE
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIY 137 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~ 137 (460)
.-.+.+.+..++. ++|+||...-.+ .....-+..|||++-
T Consensus 49 ---------~d~~~l~~~a~~~--~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 49 ---------TDPEELADFAKEN--KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp ---------T-HHHHHHHHHHT--TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred ---------CCHHHHHHHHHHc--CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 0224555666665 999999987665 456667778998864
No 252
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=64.41 E-value=55 Score=33.18 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEE
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 137 (460)
..+.+++++. +||++|.+. ....+|+++|||++-
T Consensus 383 ~e~~~~i~~~--~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKEA--KADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhhc--CCCEEEecC---chhhhhhhcCCCEEE
Confidence 3445666665 999999983 467889999999984
No 253
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=64.33 E-value=1e+02 Score=29.52 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCceee-eecC---hHhhhccccccccccc--CChhHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeec-CCcc
Q 012587 327 ERGCIA-GWVP---QEEVLAHSAVGGFLTH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCD 399 (460)
Q Consensus 327 ~n~~~~-~~vp---~~~il~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~-~~~~ 399 (460)
+|+.+. +++| +..+|..|++..|.|. =|.|++.-.|..|+|+++- .+-+.+-... + .|+-+... ++++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-E-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-h-CCCeEEeccccCC
Confidence 477654 7888 5788999999666664 5899999999999999875 3344444444 4 48877666 7899
Q ss_pred hHHHHHHHHHHHh
Q 012587 400 RNIVEKAVNDLMV 412 (460)
Q Consensus 400 ~~~l~~~i~~~l~ 412 (460)
...|+++=+++.+
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988777765
No 254
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=64.23 E-value=6.6 Score=34.58 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHh
Q 012587 16 AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNC 95 (460)
Q Consensus 16 ~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
+..|+...+.++..++.+|=.+.|+++....+...+..... ..-+.+...+..+.+ .+....+..+..
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r---------~~gy~~~~~w~~G~l---TN~~~l~g~~~~ 157 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARR---------AGGYSHNRKWLGGLL---TNARELFGALVR 157 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHH---------hcCceeeeeecccee---ecchhhcccccc
Confidence 55678888899999999999999999866555554433311 111111111222211 111111111111
Q ss_pred --hCcHHHHHHHHcCCCCccEEEE-cCCcc-hHHHHHHHhCCceEEEecchh
Q 012587 96 --ATPPLLKEMVSDSKSPVNCIIT-DGYMS-RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 96 --~~~~~l~~~~~~~~~~pD~vv~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (460)
...+....++... .+|+||. |...- .+..=|.+++||.|.+.-.-.
T Consensus 158 ~~~~~pd~~~f~~t~--~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 158 KFLSLPDALCFLPTL--TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred cccCCCcceeecccC--CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 0222223333333 7798875 44433 678889999999999876644
No 255
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=63.95 E-value=36 Score=30.20 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=56.1
Q ss_pred CCCCCHHHHH---HHHHHHHhCCCeEEEEeCccchh-HHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHH
Q 012587 15 PAVGHVNSML---NLAELLGHAGIKITFLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELV 90 (460)
Q Consensus 15 ~~~Gh~~p~l---~La~~L~~rGH~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
+=.||+++++ .+++-|+.+|++|.++++-.... ++...+. +...++..+.
T Consensus 34 ~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~--------------------------~~g~~p~e~~ 87 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAR--------------------------EEGLSWKEVA 87 (213)
T ss_pred cccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHH--------------------------HcCCCHHHHH
Confidence 3469999877 56888888999999999633322 3322211 0123445555
Q ss_pred HHHHhhCcHHHHHHHHcCC-CCccEEEEcCCcchHHHHHHHhCCce
Q 012587 91 DSLNCATPPLLKEMVSDSK-SPVNCIITDGYMSRAIDAAREVGVSI 135 (460)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~-~~pD~vv~D~~~~~~~~~A~~lgiP~ 135 (460)
+.+. ..+.+.++.++ ..||..+.--+..|+.++.+.+|-|+
T Consensus 88 ~~~~----~~f~~~~~~l~i~~~d~~~rtWh~ec~am~~~~lg~~~ 129 (213)
T cd00672 88 DYYT----KEFFEDMKALNVLPPDVVPRVWHIECSAMAMKYLGETF 129 (213)
T ss_pred HHHH----HHHHHHHHHcCCCCCCcceeehhHHHHHHHHHHcCCCc
Confidence 5554 45566666663 24466665544448888888888665
No 256
>PRK06321 replicative DNA helicase; Provisional
Probab=63.53 E-value=33 Score=34.69 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCccchhHHhhc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~~ 52 (460)
=|++...|+.|-..-.+.+|...+. .|..|.|++.+...+.+...
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 4678888999999999999999874 59999999987766655443
No 257
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=63.41 E-value=64 Score=30.63 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|||+|+..+. ..+...++|.++||+|..+.+
T Consensus 1 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (313)
T TIGR00460 1 LRIVFFGTPT-----FSLPVLEELREDNFEVVGVVT 31 (313)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCcEEEEEc
Confidence 5899986654 336777889999999986665
No 258
>PRK09739 hypothetical protein; Provisional
Probab=63.41 E-value=18 Score=31.70 Aligned_cols=39 Identities=5% Similarity=0.038 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCCC-H-HH-HHHHHHHHHhCCCeEEEEeC
Q 012587 4 QDHVHVAILPLPAVGH-V-NS-MLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh-~-~p-~l~La~~L~~rGH~Vt~~~~ 42 (460)
|+||||+++...-+.+ . .- .-.+.+.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 4578998886543332 2 21 33456677778999998753
No 259
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=63.20 E-value=35 Score=33.83 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEE
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 138 (460)
..+.+.++.. +||+++.+.. ...+|+++|||++..
T Consensus 346 ~e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 4456777776 9999999954 467899999999854
No 260
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=63.06 E-value=17 Score=33.74 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
+++|+|+-.|..|. .+|+.|+++||.|.++.-+.........
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 56999999998886 4799999999999999987776665544
No 261
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=62.88 E-value=9.1 Score=33.15 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
.||++...|+.|=+.-.+.+.+.|.+.|++|+++.++.-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 378999999888888888999999999999999998543
No 262
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=62.73 E-value=36 Score=34.14 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 100 ~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
.+.+.+++. +||++|.... +..+|+++|||++.+.
T Consensus 378 e~~~~i~~~--~pdllig~s~---~~~~A~~lgip~~~~~ 412 (443)
T TIGR01862 378 EFEEILEKL--KPDIIFSGIK---EKFVAQKLGVPYRQMH 412 (443)
T ss_pred HHHHHHHhc--CCCEEEEcCc---chhhhhhcCCCeEecC
Confidence 345556665 9999998864 5778999999999853
No 263
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.40 E-value=12 Score=35.42 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
|.+ .+|||+|+-.|+.|= .+|..|++.||+|++++... .+.+.
T Consensus 1 ~~~-~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~ 43 (313)
T PRK06249 1 MDS-ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVR 43 (313)
T ss_pred CCC-cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHH
Confidence 444 347999998888774 46788999999999999744 44443
No 264
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=62.20 E-value=1.1e+02 Score=26.70 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc-----hhHHhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY-----YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
.-.|.+++..+.|-....+.+|-....+|++|.++-.=.. ...+.+. .+++.+...+.++.-..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~----------l~~v~~~~~g~~~~~~~- 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF----------GGGVEFHVMGTGFTWET- 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc----------CCCcEEEECCCCCcccC-
Confidence 3588999999999999999999999999999999863111 1111111 34577777765433211
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS 122 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~ 122 (460)
.+...-... ........++.+.+ .++|+||-|-...
T Consensus 91 ---~~~~e~~~~-~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 ---QDRERDIAA-AREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred ---CCcHHHHHH-HHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 111111111 11223344455544 4999999996543
No 265
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=62.11 E-value=29 Score=33.01 Aligned_cols=132 Identities=12% Similarity=-0.005 Sum_probs=73.3
Q ss_pred CcEEE-EEecCcc--cCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeee--cC-hHhh
Q 012587 267 QSVIY-VSFGSIA--VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGW--VP-QEEV 340 (460)
Q Consensus 267 ~~~V~-vs~GS~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~--vp-~~~i 340 (460)
++.|. +..||.. ..+.+.+.++++.+.+.++++++..+++ .+...-..+.+ ...++.+.+- +. -..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~------~e~~~~~~i~~-~~~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE------HEEQRAKRLAE-GFPYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH------HHHHHHHHHHc-cCCcceecCCCCHHHHHHH
Confidence 45554 4444433 3566778888888877777766543321 00011111111 1123333332 33 3677
Q ss_pred hcccccccccccCChhHHHHHHHhCCceecccccccchhhH------HHHHhhhceeeeecCCcchHHHHHHHHHHHh
Q 012587 341 LAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINS------RFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 341 l~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na------~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~ 412 (460)
+.+|++ +|+. ..|.++=|.+.|+|+|++=-..|...++ ..+ . .++..+ .+.+++.+.++++++|+
T Consensus 251 i~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~--~~~~cm-~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-R--SPGKSM-ADLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-c--CCCccc-ccCCHHHHHHHHHHHhh
Confidence 888886 7776 6899999999999999884322221111 111 0 011111 57888888888887764
No 266
>PRK00784 cobyric acid synthase; Provisional
Probab=61.80 E-value=77 Score=32.26 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=28.7
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 8 ~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.|+|... ..-|-..-+..|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4666645 4689999999999999999999987744
No 267
>PLN02470 acetolactate synthase
Probab=61.76 E-value=26 Score=36.58 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=51.5
Q ss_pred EecCcccCCH--HHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecC-hHhh-------hc
Q 012587 273 SFGSIAVMSR--DQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVP-QEEV-------LA 342 (460)
Q Consensus 273 s~GS~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp-~~~i-------l~ 342 (460)
+|||-...+. ...+.+++.|++.|.+.|+.+.++... .+-+.+. ..++++++.--. +.+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~------~l~dal~--~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM------EIHQALT--RSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH------HHHHHHh--ccCCceEEEeccHHHHHHHHHHHHHH
Confidence 4555543333 235667888888888888877543111 1222221 112344332111 1111 12
Q ss_pred ccccccccccCCh------hHHHHHHHhCCceecccc
Q 012587 343 HSAVGGFLTHCGW------NSTLESIVAGMPMICWPS 373 (460)
Q Consensus 343 ~~~~~~~I~HGG~------gs~~eal~~GvP~l~~P~ 373 (460)
...++++++|.|- +.+++|...++|+|++.-
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 2334458888884 488999999999999953
No 268
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=61.73 E-value=1e+02 Score=26.84 Aligned_cols=103 Identities=11% Similarity=0.122 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCC--eEEEEeCcc-chh--HHhhccccccccccCCCCceEEecCC-CCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGI--KITFLNTEH-YYD--RVIRHSSDAFSRYMQIPGFQFKTLTD-GLPRDHP 80 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH--~Vt~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 80 (460)
+||++++.+...-+. ++.+.+.+.++ +|.++.+.. .+. ...+.. ++.+..++. .+..
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~-----------gip~~~~~~~~~~~--- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLERAAQA-----------GIPTFVLSLKDFPS--- 63 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHHHHHc-----------CCCEEEECccccCc---
Confidence 589999887754444 56666776655 666654432 222 122222 355444321 1110
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
.....+.+.+.++++ +||++|+-.+.. ....+-......++-++++
T Consensus 64 -------------~~~~~~~~~~~l~~~--~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 64 -------------REAFDQAIIEELRAH--EVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred -------------hhhhhHHHHHHHHhc--CCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
Confidence 001234566777777 999999876533 3333333344445555443
No 269
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.31 E-value=4.6 Score=33.89 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
||.++-.|..|+ ++|..|.++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577777777665 78999999999999999753
No 270
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=61.14 E-value=77 Score=26.75 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=32.1
Q ss_pred cHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecc
Q 012587 98 PPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 98 ~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~ 141 (460)
...+.+++++. +||+|+...... .+..+|.+||.|++.-+..
T Consensus 72 a~al~~~i~~~--~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 72 APALVALAKKE--KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHhc--CCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 35556666665 899999776544 5888999999999996664
No 271
>PRK08760 replicative DNA helicase; Provisional
Probab=61.03 E-value=19 Score=36.44 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCccchhHHhh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~ 51 (460)
=|++...|+.|-..-.+.+|...+. .|+.|.|++.+...+.+..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 4678888999999999999998875 5999999998766665544
No 272
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=61.02 E-value=21 Score=30.30 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHH----H-Hh-CCceEEEecc
Q 012587 93 LNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAA----R-EV-GVSIIYFRTI 141 (460)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A----~-~l-giP~v~~~~~ 141 (460)
+.....+.+.+++++. +||+||+-..+.....++ + .+ ++|.+++.|-
T Consensus 73 ~~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 73 LSRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 3333456788888887 999999886654332122 2 24 5888877765
No 273
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=60.99 E-value=10 Score=38.06 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCCCHHHH------------HHHHHHHHhCCCeEEEEeCcc
Q 012587 5 DHVHVAILPLPAVGHVNSM------------LNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~------------l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+..||++...|++=.+.|. .+||+++..+|++||+++++.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3469999999999888885 489999999999999999754
No 274
>PRK10867 signal recognition particle protein; Provisional
Probab=60.28 E-value=44 Score=33.31 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCccchh
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFLNTEHYYD 47 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~r-GH~Vt~~~~~~~~~ 47 (460)
+.-|+++-.++-|-..-...||..|+.+ |++|.+++.+.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 3455666667999999999999999999 99999999865443
No 275
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=60.26 E-value=33 Score=32.53 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTE 43 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rG--H~Vt~~~~~ 43 (460)
||||++...++. + .++++|++.| |+|..+...
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCC
Confidence 789999988654 2 7899999984 988888664
No 276
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=60.23 E-value=8.2 Score=32.58 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~ 41 (460)
|+||.|+-.|..| .++|+.|.++||+|+++-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 6899999988766 578999999999999886
No 277
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.19 E-value=22 Score=28.90 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
.+|++.+.++.+|-.----++..|.++|++|..++..-..+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999875555555444
No 278
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=60.15 E-value=27 Score=31.14 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhcc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHS 53 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 53 (460)
-+++...|+.|--.-.+.++....++|+.|.|++.+...+.+.+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~ 63 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 4566666788888888888888777899999999988777765543
No 279
>PRK07206 hypothetical protein; Provisional
Probab=60.07 E-value=35 Score=33.76 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
.+|+++-.... ...++++++++|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 36676665433 3468999999999999888643
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=59.58 E-value=39 Score=32.91 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
=+++.-.|+.|--.=++.++..+.++|.+|.|++.++..+.+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 3566666799999999999999999999999999876655543
No 281
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=59.46 E-value=10 Score=36.41 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
||||+|+-.|..| ..+|..|.++||+|+++....
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 4799999888877 457888999999999998643
No 282
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=58.61 E-value=66 Score=27.52 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecc
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~ 141 (460)
..+.+++++. +||+|+...... .+..+|.+||.|++.=+..
T Consensus 81 ~~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~ 124 (181)
T cd01985 81 KALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQISDVTK 124 (181)
T ss_pred HHHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcceeEEE
Confidence 4556666665 899999876655 5888999999999985554
No 283
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=58.22 E-value=64 Score=30.74 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred EEEEEcCCCCC-----CHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 8 HVAILPLPAVG-----HVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 8 ~il~~~~~~~G-----h~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
-|+|.+..+.| ...-+..|++.|.++|.+|.+++++...+...+... . .+.... + .
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~----------~-----~~~~~~--~--l 236 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA----------L-----LPGELR--N--L 236 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH----------h-----CCcccc--c--C
Confidence 45555544333 123578999999989999999988655443332210 0 000000 0 0
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
.. .....++-.+++ +.|++|+.- .+...+|..+|+|+|.+..
T Consensus 237 ~g----------~~sL~el~ali~----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 237 AG----------ETSLDEAVDLIA----LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred CC----------CCCHHHHHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 00 001123333333 568999763 3578899999999998755
No 284
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=57.98 E-value=45 Score=29.55 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHH---h-
Q 012587 20 VNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLN---C- 95 (460)
Q Consensus 20 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 95 (460)
+.-.+.+...+..+|-+|.|+++......+.+..... .+..+. ...+-.+..............+. .
T Consensus 42 L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~-------~~~~yi--~~rWi~G~LTN~~~i~~~i~~l~~l~~~ 112 (211)
T PF00318_consen 42 LRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKR-------TGSFYI--NERWIGGTLTNWKTIKKSIKKLKKLEKL 112 (211)
T ss_dssp HHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHH-------HTCEEE--ESS-STTTTTTTTHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHH-------hCCCcc--CceecCcccCcHHHHHHHHHHHHHHHHh
Confidence 3345566677778899999999865555443332210 011121 12333443322222221111111 0
Q ss_pred ---------hCcHHHHHHHHcC------CCCccEEEEc-CCcc-hHHHHHHHhCCceEEEecchhH
Q 012587 96 ---------ATPPLLKEMVSDS------KSPVNCIITD-GYMS-RAIDAAREVGVSIIYFRTISAC 144 (460)
Q Consensus 96 ---------~~~~~l~~~~~~~------~~~pD~vv~D-~~~~-~~~~~A~~lgiP~v~~~~~~~~ 144 (460)
........+-+.+ ...||+||.- ...- .+..=|..+|||+|.++.+...
T Consensus 113 ~~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~ 178 (211)
T PF00318_consen 113 FKLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCN 178 (211)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-
T ss_pred hhccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhHHHHHhcCceEEEeecCCCC
Confidence 0112222333223 3569998754 3332 5777788999999999876443
No 285
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=57.33 E-value=13 Score=34.96 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC-ccchhHHhh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT-EHYYDRVIR 51 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~-~~~~~~~~~ 51 (460)
|||+|+-.|..| ..+|..|.+.||+|+++.. +...+.+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence 588888888777 4678889999999999986 343444443
No 286
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=57.28 E-value=1.2e+02 Score=29.10 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCC-----CHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCC
Q 012587 7 VHVAILPLPAVG-----HVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPR 81 (460)
Q Consensus 7 ~~il~~~~~~~G-----h~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (460)
..|+|.+..+.| -..-+..|++.|.++|.+|.+++++...+...+.... ..+... +..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-------~~~~~~------l~~---- 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-------LPNAVI------LAG---- 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-------cCCccc------cCC----
Confidence 466777663432 2445889999999999999999887444444333210 000000 000
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecc
Q 012587 82 TPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (460)
.. ...++..+++ ..|++|+.- .+...+|..+|.|+|.+...
T Consensus 239 -k~------------sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 239 -KT------------SLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred -CC------------CHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECC
Confidence 11 1123333332 678888652 35789999999999998764
No 287
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=57.28 E-value=50 Score=33.92 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=66.1
Q ss_pred CCCHHHHHHHH-HHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC-CCCC------------C-----
Q 012587 17 VGHVNSMLNLA-ELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT-DGLP------------R----- 77 (460)
Q Consensus 17 ~Gh~~p~l~La-~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~----- 77 (460)
.|++.=.+.++ +.+.+.|++|.+..+ .+++.+.+... +.+..++ .+++ .
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~~-----------iPVv~i~~s~~Dil~al~~a~~~~~~ia~v 103 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRLS-----------LPVIVIKPTGFDVMQALARARRIASSIGVV 103 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhCC-----------CCEEEecCChhhHHHHHHHHHhcCCcEEEE
Confidence 47788888888 447777999988876 77888887643 2222222 0111 0
Q ss_pred CCCCCCCChHHHHHHHHhh-------CcHHHHHHHHcC-CCCccEEEEcCCcchHHHHHHHhCCceEEEecc
Q 012587 78 DHPRTPDKFPELVDSLNCA-------TPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~-~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (460)
+..........+++.+... ..+.++..++++ ..+.++||.|.. +..+|+++|++.|.+.+.
T Consensus 104 g~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 104 THQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred ecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 0000111122222222111 234455555555 459999999964 688999999999998774
No 288
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=57.23 E-value=94 Score=29.04 Aligned_cols=111 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCC
Q 012587 2 EKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPR 81 (460)
Q Consensus 2 ~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (460)
...++|||+|+..+....+..++.-.+.=.-...=+.+++..+....+++..| +.+..++........
T Consensus 85 ~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----------Ip~~~~~~~~~~~~~- 152 (286)
T PRK13011 85 DPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHG-----------IPFHHFPITPDTKPQ- 152 (286)
T ss_pred ecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhC-----------CCEEEeCCCcCchhh-
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 82 TPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
....+.+.++++ ++|+||.-.+.. ....+-+.+.-.++-++++
T Consensus 153 ---------------~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 153 ---------------QEAQVLDVVEES--GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ---------------hHHHHHHHHHHh--CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 289
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=57.14 E-value=13 Score=35.00 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
|||+|+-.|..| ..+|..|+++||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 589999888776 457888999999999998744444444
No 290
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=56.85 E-value=57 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=33.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
-.|.|.-.|+-|--.-.=+|++.|.++||+|-++.-++
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 47888888999999999999999999999999998533
No 291
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=56.79 E-value=31 Score=31.28 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=56.8
Q ss_pred HHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCC-CCCCCChHHHHHHHHhhCcHHHH
Q 012587 24 LNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDH-PRTPDKFPELVDSLNCATPPLLK 102 (460)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 102 (460)
-.+++.+.+.|-+|.+.++..+...+..... ...+-+..+|....... .+..-....++-.--....+.=+
T Consensus 118 ~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~--------~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~ 189 (257)
T COG2099 118 EEAAEAAKQLGRRVFLTTGRQNLAHFVAADA--------HSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNK 189 (257)
T ss_pred HHHHHHHhccCCcEEEecCccchHHHhcCcc--------cceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHH
Confidence 3566777777777777777677777765533 11233444442111000 00000000011010111234446
Q ss_pred HHHHcCCCCccEEEEcCCcc-----hHHHHHHHhCCceEEEe
Q 012587 103 EMVSDSKSPVNCIITDGYMS-----RAIDAAREVGVSIIYFR 139 (460)
Q Consensus 103 ~~~~~~~~~pD~vv~D~~~~-----~~~~~A~~lgiP~v~~~ 139 (460)
.+++.+ +.|+||+-.... .=..+|..+|||+|.+.
T Consensus 190 all~q~--~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 190 ALLEQY--RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHh--CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 788887 999999864433 23778999999999964
No 292
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=56.24 E-value=64 Score=29.91 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
.-|+|+..++-|-..-...||..|+++|++|.+++.+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 345666667999999999999999999999999997543
No 293
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=56.20 E-value=2.2e+02 Score=29.71 Aligned_cols=144 Identities=10% Similarity=0.122 Sum_probs=72.4
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccc
Q 012587 266 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSA 345 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~ 345 (460)
+++.|-|-+||.+ +....+.....|+.+|..+-+.+. ..+.+|+.+.+. +-.. ....
T Consensus 409 ~~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~--------sahr~~~~~~~~----------~~~~---~~~~ 465 (577)
T PLN02948 409 GTPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIV--------SAHRTPERMFSY----------ARSA---HSRG 465 (577)
T ss_pred CCCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEE--------CCccCHHHHHHH----------HHHH---HHCC
Confidence 3455666666654 556667777777777766544332 112344433211 0000 0012
Q ss_pred cccccccCChhHHHHHHH---hCCceecccccccc--hhhH-HHHHhhh--ceeeee---cCCcchHHHHHHHHHHHhHh
Q 012587 346 VGGFLTHCGWNSTLESIV---AGMPMICWPSFADQ--QINS-RFVGEVW--KLGLDI---KDLCDRNIVEKAVNDLMVER 414 (460)
Q Consensus 346 ~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~DQ--~~na-~~~~e~~--G~g~~~---~~~~~~~~l~~~i~~~l~~~ 414 (460)
++++|.=.|.-.-+-.+. .-+|++.+|....- -..+ .-.. ++ |+.+.. ++..++.-++..|..+- |
T Consensus 466 ~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~-~- 542 (577)
T PLN02948 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-QMPRGVPVATVAIGNATNAGLLAVRMLGAS-D- 542 (577)
T ss_pred CCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-cCCCCCeEEEEecCChHHHHHHHHHHHhcC-C-
Confidence 234777766533222222 35899999985321 1122 1121 34 543222 13344444443332222 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 012587 415 KEEFMESADRMANLAKKSVNKG 436 (460)
Q Consensus 415 ~~~~~~~a~~l~~~~~~~~~~~ 436 (460)
+.++++.+..++++++.+.+.
T Consensus 543 -~~~~~~~~~~~~~~~~~~~~~ 563 (577)
T PLN02948 543 -PDLLDKMEAYQEDMRDMVLEK 563 (577)
T ss_pred -HHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999988864443
No 294
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=56.02 E-value=19 Score=35.43 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=36.6
Q ss_pred CCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHH
Q 012587 3 KQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (460)
Q Consensus 3 ~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (460)
+++++||++...|+. ..+=...+.+.|.+.|++|.++.++.-.+.+
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 445679999988876 5667889999999999999999985544444
No 295
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=56.00 E-value=70 Score=29.36 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (460)
=+++.-.|+.|-..-.+.++...+++|..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 456666779999999999999888899999999986433
No 296
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=55.76 E-value=1.2e+02 Score=25.21 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=77.5
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhhCCCcEE-EEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccc
Q 012587 269 VIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFL-WVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVG 347 (460)
Q Consensus 269 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~ 347 (460)
.|-|=+||.+ +-+..+...+.|+++++.+- +++..+ ..|+...+. +- =.....++
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH---------RTPe~m~~y----------a~---~a~~~g~~ 59 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH---------RTPEKMFEY----------AE---EAEERGVK 59 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc---------CCHHHHHHH----------HH---HHHHCCCe
Confidence 4667788875 55667788899999988763 333322 344432211 10 01223455
Q ss_pred cccccCChh----HHHHHHHhCCceecccccccc---hhhHHHHHhhhceeeeec-----CCcchHHHHHHHHHHHhHhH
Q 012587 348 GFLTHCGWN----STLESIVAGMPMICWPSFADQ---QINSRFVGEVWKLGLDIK-----DLCDRNIVEKAVNDLMVERK 415 (460)
Q Consensus 348 ~~I~HGG~g----s~~eal~~GvP~l~~P~~~DQ---~~na~~~~e~~G~g~~~~-----~~~~~~~l~~~i~~~l~~~~ 415 (460)
++|.-.|.. .+. |-.--+|++.+|....- .+----++ ++--|+-+. +..|+.-|...|-.+- |
T Consensus 60 viIAgAGgAAHLPGmv-Aa~T~lPViGVPv~s~~L~GlDSL~SiV-QMP~GvPVaTvaIg~a~NAallAa~ILa~~-d-- 134 (162)
T COG0041 60 VIIAGAGGAAHLPGMV-AAKTPLPVIGVPVQSKALSGLDSLLSIV-QMPAGVPVATVAIGNAANAALLAAQILAIK-D-- 134 (162)
T ss_pred EEEecCcchhhcchhh-hhcCCCCeEeccCccccccchHHHHHHh-cCCCCCeeEEEeecchhhHHHHHHHHHcCC-C--
Confidence 577665532 222 33347899999986422 12222232 344454331 3345444544443333 5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 012587 416 EEFMESADRMANLAKKSVNK 435 (460)
Q Consensus 416 ~~~~~~a~~l~~~~~~~~~~ 435 (460)
+.++++.+++++.+++.+.+
T Consensus 135 ~~l~~kl~~~r~~~~~~V~~ 154 (162)
T COG0041 135 PELAEKLAEFREAQTEEVLE 154 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999886433
No 297
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=55.70 E-value=1e+02 Score=28.85 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=56.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHh--CCCeEEEEeCcc-chhHHhhccccccccccCCCCceEEecCCCCCCCCC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGH--AGIKITFLNTEH-YYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~--rGH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460)
.+++||+++..|....+.-++ ++..+ -+++|..+.+.. ....+++..| +.+..++... . .
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----------Ip~~~~~~~~-~-~- 149 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVERFG-----------IPFHHVPVTK-E-T- 149 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHHHhC-----------CCEEEeccCc-c-c-
Confidence 467899999999855555444 33333 267887776533 3444544433 6655554210 0 0
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEec
Q 012587 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~ 140 (460)
.......+.+.++++ +||+||.-.+.. ....+-+.+.-.++-+++
T Consensus 150 -------------~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 150 -------------KAEAEARLLELIDEY--QPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred -------------cchhHHHHHHHHHHh--CCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 001223456667777 999999876543 333333434334444433
No 298
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=55.57 E-value=30 Score=30.75 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
..||++.+.++..|-....=++..|..+|.+|++++..-..+.+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 46999999999999999999999999999999999975555555444
No 299
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.41 E-value=46 Score=32.80 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchh
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (460)
.++..|+++-.-+.|-.--+-.||+.|+.+|++|.+++.+-+..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 34567888888899999999999999999999999999755443
No 300
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=55.34 E-value=13 Score=31.97 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
||++...|+.|-+. ...+.+.|.++|++|.++.++.-.+.+.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 46677677666555 4889999999999999999955444443
No 301
>PRK11823 DNA repair protein RadA; Provisional
Probab=55.16 E-value=39 Score=33.89 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
-+++.-.|+.|--.-++.++..+.++|.+|.|++.++..+.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 4566666799999999999999998999999999877766653
No 302
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.95 E-value=46 Score=31.59 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=40.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSS 54 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 54 (460)
+--|+|+-.-+-|-.--.-.||+-|.+.|++|.++...-|.....+.+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~ 187 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLE 187 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH
Confidence 4456777777999999999999999999999999999777665555543
No 303
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.89 E-value=95 Score=27.96 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=34.0
Q ss_pred HhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEE
Q 012587 94 NCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYF 138 (460)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~ 138 (460)
+..-...++.+++++ .+-++.+.|..++ -+..+|...|||++.=
T Consensus 133 ~tsn~~aM~~~m~~L-k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 133 FTSNEDAMEKLMEAL-KERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred hcCcHHHHHHHHHHH-HHCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 333456677788777 5779999998887 3678899999999883
No 304
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=53.91 E-value=19 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
||+|+|+-.|-.| -+||+.|...||+|++.+.
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~ 32 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSS 32 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecC
Confidence 6788887776655 5789999999999999975
No 305
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=53.66 E-value=46 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCccEEE-EcCCcc-hHHHHHHHhCCceEEEecchh
Q 012587 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 110 ~~pD~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (460)
..||+|| .|...- .+..=|.++|||+|.++.+-.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 5799986 554433 577889999999999987643
No 306
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=53.25 E-value=69 Score=32.24 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
=+++.--|+.|--.-++.++..+.++|++|.|++.++..+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 4566666899999999999999999999999999877666553
No 307
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=53.22 E-value=25 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|||+|+-=|+-|-..-.+.||.+|+++|++|.++-...
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 57999999999999999999999999999999987644
No 308
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=52.94 E-value=19 Score=31.64 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|+-|++.-+|+.|-.-..-.||++|.+++|+|.-.+.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 4567888889999999999999999999999988765
No 309
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=52.65 E-value=1.3e+02 Score=33.40 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
..+.+++++. +||++|.... ...+|+++|||++..+.
T Consensus 379 ~el~~~i~~~--~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 379 AGLLRVMREK--MPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred HHHHHHHHhc--CCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 3456667776 9999999754 56789999999997653
No 310
>PRK10490 sensor protein KdpD; Provisional
Probab=52.21 E-value=63 Score=35.75 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+.||.+=..|+-|-.+.+|.-|++|+++|++|.+---
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~ 60 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVV 60 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3699999999999999999999999999999987654
No 311
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=52.08 E-value=63 Score=33.09 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
..+++++... +||++|.++. +..+|+.+|||+|.+.
T Consensus 427 ~~l~~~l~~~--~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 427 WHLRSLVFTE--PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHHhhc--CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 4556666665 9999999864 6788999999998864
No 312
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=51.97 E-value=65 Score=32.05 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (460)
.-|+++-.++-|-.--...||..|+++|++|.+++.+.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3566777789999999999999999999999999985544
No 313
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=51.94 E-value=25 Score=32.42 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=30.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
.|.++.=|+-|-..-...||.+|+++|++|.++-..
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 445554579999999999999999999999999653
No 314
>PRK13768 GTPase; Provisional
Probab=51.71 E-value=52 Score=30.08 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
-|++...++.|--.-...++..|+++|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4556666788888889999999999999999997644
No 315
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=51.11 E-value=29 Score=30.44 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCCCHHHHHH-HHHHHHh-CCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLN-LAELLGH-AGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~-La~~L~~-rGH~Vt~~~~ 42 (460)
||||+++-+...||..-+.. +++.+.+ .|++|.++.-
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 56999999988999999776 5666776 8999988875
No 316
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=51.01 E-value=1.7e+02 Score=27.65 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|||+|+..+. -.+...++|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 6899985543 456778888888999886664
No 317
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=51.01 E-value=89 Score=26.45 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=36.9
Q ss_pred cccccCCh------hHHHHHHHhCCceeccccccc---------c-hhhHHHHHhhhceeeeecCCcchHHHHHHHHHHH
Q 012587 348 GFLTHCGW------NSTLESIVAGMPMICWPSFAD---------Q-QINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLM 411 (460)
Q Consensus 348 ~~I~HGG~------gs~~eal~~GvP~l~~P~~~D---------Q-~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l 411 (460)
++++|.|- +++.+|...++|+|++.-..+ | ..+...+.+ .+......-.+++++...+++.+
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~--~~~k~~~~v~~~~~~~~~~~~A~ 144 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFR--PVTKWSYRVTSPDDLPEALDRAF 144 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHG--GGSSEEEEECSGGGHHHHHHHHH
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhhcchhc--cccchhcccCCHHHHHHHHHHHH
Confidence 47888774 478899999999999975321 2 233333322 34433323346666666666665
Q ss_pred h
Q 012587 412 V 412 (460)
Q Consensus 412 ~ 412 (460)
.
T Consensus 145 ~ 145 (172)
T PF02776_consen 145 R 145 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 318
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=50.84 E-value=61 Score=32.32 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCccchhHHhh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~ 51 (460)
=+++...|+.|-..-.+.++..++. .|+.|.|++.+...+.+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 4677888899999999999998875 6999999998777666643
No 319
>PRK10037 cell division protein; Provisional
Probab=50.79 E-value=27 Score=31.82 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=32.1
Q ss_pred CcEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|+.|.++.. |+-|-..-...||.+|+++|++|.++=...
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 345666666 799999999999999999999999996533
No 320
>PRK05636 replicative DNA helicase; Provisional
Probab=50.37 E-value=31 Score=35.14 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCccchhHHh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~ 50 (460)
=|++...|+.|-..-.+.+|...+ +.|..|.|++.+...+.+.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 467888899999999999998876 4689999999866655553
No 321
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=50.34 E-value=22 Score=35.34 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|.++||.|+-.|-.| +.+|..|+++||+|+.+-.
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 346799999777655 5789999999999998864
No 322
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=50.23 E-value=43 Score=32.39 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccccccccccCChhH---HHHHHHhCCceecc
Q 012587 343 HSAVGGFLTHCGWNS---TLESIVAGMPMICW 371 (460)
Q Consensus 343 ~~~~~~~I~HGG~gs---~~eal~~GvP~l~~ 371 (460)
++++ +|++||+-| +..|...|+|.++.
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 4665 999999986 99999999999874
No 323
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=50.12 E-value=80 Score=31.65 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|+|||++-.+.. .+.+++++++.|++|..+.+..
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~~ 35 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKELGIKTVAVHSTA 35 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHHcCCeEEEEcChh
Confidence 569999854433 5888999999999999987644
No 324
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=50.10 E-value=31 Score=30.43 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=30.8
Q ss_pred cHHHHHHHHcCCCCccEEEEcCCcc-------hHHHHHHHhCCceEEEecc
Q 012587 98 PPLLKEMVSDSKSPVNCIITDGYMS-------RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 98 ~~~l~~~~~~~~~~pD~vv~D~~~~-------~~~~~A~~lgiP~v~~~~~ 141 (460)
.+.+.++++.+..+||+|+.|.+.. .|..++-.+++|.|-+.=.
T Consensus 76 ~P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~ 126 (206)
T PF04493_consen 76 LPCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKS 126 (206)
T ss_dssp HHHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS
T ss_pred HHHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCc
Confidence 3566777777766899999998865 4677788999999997554
No 325
>PRK08462 biotin carboxylase; Validated
Probab=50.07 E-value=1.3e+02 Score=30.11 Aligned_cols=100 Identities=7% Similarity=0.017 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
+|.|||++..|.. .+++.+++++.|++|..+.+..+.....-. ... +...++.......
T Consensus 3 ~~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~----------~ad-~~~~~~~~~~~~~----- 61 (445)
T PRK08462 3 EIKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTADKDALYLK----------YAD-AKICIGGAKSSES----- 61 (445)
T ss_pred CCCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechhhcCCchhh----------hCC-EEEEeCCCchhcc-----
Confidence 4569999877653 678889999999998888764432111000 000 1122221111000
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc----hHHHHHHHhCCceEE
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIY 137 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~----~~~~~A~~lgiP~v~ 137 (460)
+. -.+.+.++.++. ++|+|+...-.. ....+++.+|+|++.
T Consensus 62 --------y~--~~~~l~~~~~~~--~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g 106 (445)
T PRK08462 62 --------YL--NIPAIISAAEIF--EADAIFPGYGFLSENQNFVEICSHHNIKFIG 106 (445)
T ss_pred --------cC--CHHHHHHHHHHc--CCCEEEECCCccccCHHHHHHHHHCCCeEEC
Confidence 00 124556666775 999999664321 223467899999875
No 326
>PRK09165 replicative DNA helicase; Provisional
Probab=49.83 E-value=56 Score=33.34 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC---------------CCeEEEEeCccchhHHhhc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHA---------------GIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~r---------------GH~Vt~~~~~~~~~~~~~~ 52 (460)
=|++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+...
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 46788889999999999998888753 8899999987777666543
No 327
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=49.77 E-value=2.4e+02 Score=30.24 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=29.4
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 8 HVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 8 ~il~~~~~-~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.|.+.+.. ..|-..-++.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 56666554 689999999999999999999999864
No 328
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=49.75 E-value=46 Score=35.83 Aligned_cols=111 Identities=12% Similarity=0.026 Sum_probs=63.8
Q ss_pred eeeecChH---hhhccccccccccc---CCh-hHHHHHHHhCCceecccccccchhhHHHHHhhhceeeeecCCcchHHH
Q 012587 331 IAGWVPQE---EVLAHSAVGGFLTH---CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIV 403 (460)
Q Consensus 331 ~~~~vp~~---~il~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~~~~l 403 (460)
+.+++++. ++++.+++ ++.- -|. .++.||+++|+|-..+|...+--.-+..+ .-|+.+ ...+.+.+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv-~P~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLV-NPNDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEE-CCCCHHHH
Confidence 34677865 46678887 5543 354 47899999977622222222211111222 225666 55789999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 012587 404 EKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 453 (460)
Q Consensus 404 ~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 453 (460)
+++|.++|+....+.+++.+++.+.+++ -+...-++++++.+.+.
T Consensus 419 a~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 419 AAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 9999999983114445555555555433 23345566667666554
No 329
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=49.70 E-value=1.2e+02 Score=32.13 Aligned_cols=38 Identities=8% Similarity=0.015 Sum_probs=24.0
Q ss_pred HHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 102 KEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 102 ~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
.+.++++ +||++|+-.+.. ....+-+.....++-++++
T Consensus 68 ~~~l~~~--~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 68 VERIREL--APDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHhc--CCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 4556666 999998765533 3444445455567777766
No 330
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.68 E-value=33 Score=30.65 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=26.6
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|..+++++|++. |+.|.+ -..|++.|.++||+|++++.
T Consensus 1 ~~~~~~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 1 MGSLMGRVALVT--GAARGL--GRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCCCCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeC
Confidence 566666677763 334543 46788999999999977665
No 331
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=49.68 E-value=1.5e+02 Score=30.18 Aligned_cols=46 Identities=9% Similarity=0.040 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
.-+++.-.|+-|--.-.+.++.+.+++|.+|.+++.++..+.+.+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 4567777789999999999999999999999999998887777554
No 332
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=49.57 E-value=43 Score=28.56 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=36.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 9 il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
+++.-.|+.|--.-.+.++.+..++|..|.|++.+...+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH
Confidence 46667778899999999999999999999999987777665443
No 333
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=49.51 E-value=1.3e+02 Score=30.05 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=29.1
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~-~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.+|+|.... +.|-..-++.|++.|+++|.+|..+=.
T Consensus 2 ~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 2 KGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 356666664 788999999999999999999976654
No 334
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=49.34 E-value=28 Score=31.46 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCccchhHHhh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~ 51 (460)
||++.-.|+.+=++-.+.|.+.|.++ ||+|.++-++. ...+.+
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~-a~~~i~ 45 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRA-GEEVVR 45 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh-HHhHHh
Confidence 46666666655558899999999999 99999999844 444433
No 335
>PRK10586 putative oxidoreductase; Provisional
Probab=49.31 E-value=1.3e+02 Score=29.31 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=59.3
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhCC-CeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCC
Q 012587 7 VHVAILPLP-AVGHVNSMLNLAELLGHAG-IKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 7 ~~il~~~~~-~~Gh~~p~l~La~~L~~rG-H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
+|+...|.- .+|+ .-+-.|++.+.+.| .++.+++.+...+........... ..++.+..+....
T Consensus 6 ~~~~~~p~~y~~G~-ga~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~----~~~~~~~~~~g~~--------- 71 (362)
T PRK10586 6 IRVVVGPANYFSHP-GSIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFE----LPGAKHILFRGHC--------- 71 (362)
T ss_pred chheeCCcceEECc-CHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHH----HcCCeEEEeCCCC---------
Confidence 455444432 3442 24567888888877 789999886655444221110000 1124444333110
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchhH
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISAC 144 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~ 144 (460)
+ .+.++++.+....++|+||.=.-.. .+-.+|..+++|+|.+.|.+.+
T Consensus 72 ~------------~~~v~~l~~~~~~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~t 122 (362)
T PRK10586 72 S------------ESDVAQLAAASGDDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTIAAT 122 (362)
T ss_pred C------------HHHHHHHHHHhccCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCCccc
Confidence 0 1222222222222789998544332 4666677789999998887543
No 336
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.28 E-value=33 Score=35.32 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=30.1
Q ss_pred CcEEEEEcCC-------CCCCHHHHH---HHHHHHHhCCCeEEEEeCccc
Q 012587 6 HVHVAILPLP-------AVGHVNSML---NLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 6 ~~~il~~~~~-------~~Gh~~p~l---~La~~L~~rGH~Vt~~~~~~~ 45 (460)
|.+++|.+.. =.||+++++ .+|+-++.+||+|.|+|+.+.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4577665532 359999877 468888889999999997444
No 337
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=49.22 E-value=1.7e+02 Score=25.03 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe---Ccc--chhHHhhccccccccccCCCCceEEecCCCCCCCCCC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN---TEH--YYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPR 81 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (460)
--|.+++..+.|-..-.+.+|-....+|++|.++- +.. -...+.+. . ++.+.....++.-..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~----------~-~~~~~~~g~g~~~~~-- 72 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP----------H-GVEFQVMGTGFTWET-- 72 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh----------c-CcEEEECCCCCeecC--
Confidence 36778888999999999999999999999997662 210 11111111 1 477777766543221
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCc
Q 012587 82 TPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYM 121 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~ 121 (460)
.+....... ........++.+.+ .++|+||-|-..
T Consensus 73 --~~~~~~~~~-~~~~~~~a~~~l~~--~~~DlvVLDEi~ 107 (173)
T TIGR00708 73 --QNREADTAI-AKAAWQHAKEMLAD--PELDLVLLDELT 107 (173)
T ss_pred --CCcHHHHHH-HHHHHHHHHHHHhc--CCCCEEEehhhH
Confidence 111111111 22223344455544 499999999654
No 338
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=49.12 E-value=49 Score=29.84 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=50.2
Q ss_pred cEEEEEcCCCCCC----HHHHHHHHHHHHhCCCeEEEEeCccch-hHHhhccccccccccCCCCce--EEecCCCCCCCC
Q 012587 7 VHVAILPLPAVGH----VNSMLNLAELLGHAGIKITFLNTEHYY-DRVIRHSSDAFSRYMQIPGFQ--FKTLTDGLPRDH 79 (460)
Q Consensus 7 ~~il~~~~~~~Gh----~~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 79 (460)
..|+|.+..+... ..-+..|++.|.++|.+|.+++++... +...+... .+.. +..+.
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~---------~~~~~~~~~~~------- 169 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA---------AGLQNPVINLA------- 169 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH---------TTHTTTTEEET-------
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH---------HhcccceEeec-------
Confidence 3566666554321 222689999999999999888876651 22222111 0010 11110
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecc
Q 012587 80 PRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (460)
...+ ..++-.+++ ..|++|+.- .+...+|..+|+|+|.+...
T Consensus 170 --~~~~------------l~e~~ali~----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 170 --GKTS------------LRELAALIS----RADLVIGND--TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp --TTS-------------HHHHHHHHH----TSSEEEEES--SHHHHHHHHTT--EEEEESS
T ss_pred --CCCC------------HHHHHHHHh----cCCEEEecC--ChHHHHHHHHhCCEEEEecC
Confidence 0001 122333443 568998652 35889999999999998654
No 339
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=48.82 E-value=36 Score=28.41 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCCCHHH-HHHHHHHHHhC--CCeEEEEeCccchhHHhhccc
Q 012587 5 DHVHVAILPLPAVGHVNS-MLNLAELLGHA--GIKITFLNTEHYYDRVIRHSS 54 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p-~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~ 54 (460)
..+||+-.-.|+ ||..| +..+-++|+++ +|+|+++.+ ...+.+.+.+|
T Consensus 7 ~~~rIaWgITGa-G~~L~Et~~imk~lk~~~~~~~v~v~lS-kageeVvk~Yg 57 (187)
T COG1036 7 KKKRIAWGITGA-GHLLPETYQIMKELKKEYGDVEVDVFLS-KAGEEVVKMYG 57 (187)
T ss_pred ccceEEEEEecc-ccccHHHHHHHHHHHhhcCCceEEEeeh-hhHHHHHHHHH
Confidence 346788776666 88777 89999999998 799999988 55666666655
No 340
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=48.71 E-value=1.2e+02 Score=30.37 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+||||++-.|++.| +|++.|++.|++|.++-.
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 47999988888776 578899998987777744
No 341
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=48.48 E-value=1e+02 Score=28.63 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=31.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC-C-CeEEEEeCccc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHA-G-IKITFLNTEHY 45 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~r-G-H~Vt~~~~~~~ 45 (460)
-|+|+-..+-|-..-...||..+..+ | ++|.+++.+.+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45555556899999999999999987 6 99999998654
No 342
>PRK11519 tyrosine kinase; Provisional
Probab=48.48 E-value=3e+02 Score=29.71 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=31.5
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
..|+++++. |+.|--.-...||..|+..|++|.++-...
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 346666655 688888889999999999999999997643
No 343
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=48.24 E-value=4.1 Score=21.83 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=14.8
Q ss_pred ChhHHHHHHHhCCceecc
Q 012587 354 GWNSTLESIVAGMPMICW 371 (460)
Q Consensus 354 G~gs~~eal~~GvP~l~~ 371 (460)
|.|++.-.|+.|.|.++-
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 789999999999998764
No 344
>CHL00067 rps2 ribosomal protein S2
Probab=48.20 E-value=66 Score=28.95 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=25.8
Q ss_pred CCccEEE-EcCCcc-hHHHHHHHhCCceEEEecchh
Q 012587 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 110 ~~pD~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (460)
..||+|| .|...- .+..=|..+|||+|.++.+-.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 5799886 454433 678889999999999987644
No 345
>PRK04148 hypothetical protein; Provisional
Probab=48.12 E-value=49 Score=26.90 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.+||+.+-.| .| ..+|..|++.||+|+.+=.
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi 47 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDI 47 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEEC
Confidence 3688888888 34 3468888999999999864
No 346
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=48.05 E-value=19 Score=34.16 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
||||+|+-.|..| ..+|..|.++||+|+++..
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r 32 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWAR 32 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 5799999888776 4678889999999999876
No 347
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=47.92 E-value=31 Score=31.74 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
|+|.++-=|+-|-..-...||.+|+++|++|.++-..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5788887789999999999999999999999998654
No 348
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.84 E-value=50 Score=24.98 Aligned_cols=39 Identities=5% Similarity=0.108 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+++.||+++|..+.+--.-.-.+=+.+.++|.++.+...
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 356799999998777444445666667778998877654
No 349
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=47.64 E-value=34 Score=29.97 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
..||.+-..|+-|-.+.||.=|+.|+++|.+|.+..-
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~v 41 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYV 41 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4799999999999999999999999999999999775
No 350
>PRK06756 flavodoxin; Provisional
Probab=47.50 E-value=35 Score=28.06 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCCHHHHH-HHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSML-NLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l-~La~~L~~rGH~Vt~~~~ 42 (460)
||||+++-....||..-+. .|++.|.++|++|.++-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 5789888888899998854 678999999999987653
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=47.43 E-value=1.2e+02 Score=25.52 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 012587 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (460)
Q Consensus 9 il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (460)
+++.-.++-|-......++..|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56667789999999999999999999999999875543
No 352
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.42 E-value=36 Score=33.32 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHH
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (460)
=|++---|+.|--.=++.++..|+++| +|.++++++....+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 466667789999999999999999999 99999998776655
No 353
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.37 E-value=61 Score=31.47 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (460)
+.=|.|+-.-+.|-..-+-.+|..+.++|+++.++|.+-|.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 34567777889999999999999999999999999986653
No 354
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=47.23 E-value=33 Score=31.59 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|+|.+.-=|+-|-..-.+.||.+|+++|++|.++-...
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 57888866899999999999999999999999986533
No 355
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=47.21 E-value=1.1e+02 Score=31.39 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=24.7
Q ss_pred HHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEE
Q 012587 103 EMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (460)
Q Consensus 103 ~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 138 (460)
+.+++. +||++|.... ...+|+++|||++..
T Consensus 392 ~~l~~~--~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEML--KPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHhc--CCCEEEecCc---cchhHhhcCCCEEEc
Confidence 445665 9999999976 447899999999775
No 356
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=47.16 E-value=42 Score=26.40 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=35.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 9 il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
++..+.++..|-....-++..|.++|++|.++......+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5777888899999999999999999999999976444444443
No 357
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=46.91 E-value=27 Score=28.26 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCccchhHH
Q 012587 19 HVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (460)
Q Consensus 19 h~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (460)
-..-.+-++..|+++||+|++.+++....-+
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 3444678899999999999999996644433
No 358
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=46.86 E-value=71 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=25.7
Q ss_pred CCccEEE-EcCCcc-hHHHHHHHhCCceEEEecchh
Q 012587 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 110 ~~pD~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (460)
..||+|| .|...- .+..=|..+|||+|.+..+-.
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 5799886 554433 577889999999999887644
No 359
>PLN02939 transferase, transferring glycosyl groups
Probab=46.58 E-value=33 Score=37.55 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCcEEEEEcC---C---CCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 5 DHVHVAILPL---P---AVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 5 ~~~~il~~~~---~---~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
+.|||++++. | +.|=..-.-+|.++|+++||+|.++++.
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~ 524 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPK 524 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5689999875 1 3333344568899999999999999973
No 360
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=46.47 E-value=21 Score=35.81 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc--hHHHHHHHhCCceEEEecch
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTIS 142 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~ 142 (460)
++.++..+.. ...+++.+++..+||+|+..-.-. .|.++++++|||.+.+..+.
T Consensus 379 lWPyLe~fa~---d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 379 LWPYLEEFAD---DAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp -GGGHHHHHH---HHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred chhhHHHHHH---HHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 4445555543 333445554445999999763222 68889999999999876653
No 361
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=46.46 E-value=2.7e+02 Score=26.58 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
|+||.++-.|++| -+||+.|+++||+|++.+..
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 5799999999988 57999999999999999863
No 362
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=46.45 E-value=55 Score=28.37 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecchh
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (460)
..+.+++++...+..++|..++.. .+..+|+++|+|.|.++|...
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 445667777611123666554433 678889999999999988754
No 363
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=46.16 E-value=1.8e+02 Score=24.60 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCcc-chhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcHHH
Q 012587 23 MLNLAELLGHAGIKITFLNTEH-YYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLL 101 (460)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (460)
+..|.+...++|..|.++++.+ ..+.+.+.... . +|++.+....+++-... ..+.+
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~---~---yp~l~i~g~~~g~~~~~-----------------~~~~i 91 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERLRA---R---YPGLKIVGYHHGYFGPE-----------------EEEEI 91 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHH---H---CCCcEEEEecCCCCChh-----------------hHHHH
Confidence 4466677777899999998632 22232211111 1 67788877543221110 11224
Q ss_pred HHHHHcCCCCccEEEEcCCcc----hHHHHHHHhCCceEE
Q 012587 102 KEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIY 137 (460)
Q Consensus 102 ~~~~~~~~~~pD~vv~D~~~~----~~~~~A~~lgiP~v~ 137 (460)
.+.+++. +||+|+...-.+ ++....+.++.+++.
T Consensus 92 ~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~ 129 (171)
T cd06533 92 IERINAS--GADILFVGLGAPKQELWIARHKDRLPVPVAI 129 (171)
T ss_pred HHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 5555665 999999997776 666767777666554
No 364
>PRK13236 nitrogenase reductase; Reviewed
Probab=46.14 E-value=43 Score=31.49 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|...+|..|.|.-=|+-|--.-.+.||.+|+++|++|.++-...
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 45555544455555799999999999999999999999996533
No 365
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=45.82 E-value=34 Score=32.48 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=30.0
Q ss_pred cEEEEEcCC---CCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLP---AVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~---~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|||+|+.-| ---+.+-+++|.++..+|||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 588888765 23345578899999999999999999744
No 366
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=45.73 E-value=41 Score=30.53 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=31.1
Q ss_pred CcEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|..|+|... |+-|-..=..+||..|+++|++|..+=-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 445655555 7999999999999999999999999875
No 367
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=45.65 E-value=2.1e+02 Score=25.01 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=85.2
Q ss_pred CCcEEEEEecCcccCCHH-HHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhccc
Q 012587 266 KQSVIYVSFGSIAVMSRD-QLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHS 344 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~ 344 (460)
+-|..++.-.... +.. +-..+.+.+...+..+|+.. |.-..+.+.|.++-+.+++ =-|+
T Consensus 50 gIpt~~~~~k~~~--~r~~~d~~l~~~l~~~~~dlvvLA--------GyMrIL~~~fl~~~~grIl----------NIHP 109 (200)
T COG0299 50 GIPTVVLDRKEFP--SREAFDRALVEALDEYGPDLVVLA--------GYMRILGPEFLSRFEGRIL----------NIHP 109 (200)
T ss_pred CCCEEEeccccCC--CHHHHHHHHHHHHHhcCCCEEEEc--------chHHHcCHHHHHHhhcceE----------ecCc
Confidence 4455555544433 343 44558899999998988776 4434566776655444332 2367
Q ss_pred ccccccccCChhHHHHHHHhCCceecccccc--cchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHH
Q 012587 345 AVGGFLTHCGWNSTLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESA 422 (460)
Q Consensus 345 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a 422 (460)
++ .=.++|..+..+|+.+|+..-.+-.+. +..+-+-.+. +..+-+...-|.+.|.+.|...=. .-|-+..
T Consensus 110 SL--LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~~Dt~etl~~RV~~~Eh---~lyp~~v 181 (200)
T COG0299 110 SL--LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVLPGDTAETLEARVLEQEH---RLYPLAV 181 (200)
T ss_pred cc--ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeecCCCCHHHHHHHHHHHHH---HHHHHHH
Confidence 76 778899999999999999986666543 4444443342 233333334588888888777533 5676777
Q ss_pred HHHHHH
Q 012587 423 DRMANL 428 (460)
Q Consensus 423 ~~l~~~ 428 (460)
+.+.+.
T Consensus 182 ~~~~~g 187 (200)
T COG0299 182 KLLAEG 187 (200)
T ss_pred HHHHhC
Confidence 666553
No 368
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=45.44 E-value=33 Score=29.32 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCCHHH-HHHHHHHHHh-CCCeEEEEeCccchhHHhh
Q 012587 8 HVAILPLPAVGHVNS-MLNLAELLGH-AGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p-~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~ 51 (460)
||++.-.|+ ||... .+.+.+.|++ +||+|.++.++. .+++.+
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~-A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKA-GEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHh-HHHHHH
Confidence 466666666 78766 8899999985 599999999844 444433
No 369
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=45.34 E-value=95 Score=28.35 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCC-CeEEEEeCccchhHHhh-ccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcHH
Q 012587 23 MLNLAELLGHAG-IKITFLNTEHYYDRVIR-HSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPL 100 (460)
Q Consensus 23 ~l~La~~L~~rG-H~Vt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (460)
+-..++.|.+.+ .+|.+.++....+.+.+ ... ...+-+..+|..-. . ..-....++...-....+.
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~--------~~r~~~RvLp~~~~--~--~g~~~~~iia~~GPfs~e~ 185 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLP--------GERLFARVLPTPES--A--LGFPPKNIIAMQGPFSKEL 185 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccC--------CCEEEEEECCCccc--c--CCCChhhEEEEeCCCCHHH
Confidence 345677777777 78877777777777754 111 11233344442101 0 0001111111111112334
Q ss_pred HHHHHHcCCCCccEEEEcCCcc----hHHHHHHHhCCceEEEe
Q 012587 101 LKEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIYFR 139 (460)
Q Consensus 101 l~~~~~~~~~~pD~vv~D~~~~----~~~~~A~~lgiP~v~~~ 139 (460)
=..+++++ +.|+||+=-... .=..+|..+|||+|.+.
T Consensus 186 n~al~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 186 NRALFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 47888888 999999754322 23678999999999963
No 370
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=45.25 E-value=1.2e+02 Score=30.42 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
+..|+|+-.++-|-..-...||..|.++|++|.+++.+.+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3466777778999999999999999999999999997554
No 371
>PRK07236 hypothetical protein; Provisional
Probab=44.64 E-value=41 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|..|.+++|+|+-.|- -=+.+|..|+++|++|+++=-
T Consensus 1 ~~~~~~~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 1 MTHMSGPRAVVIGGSL-----GGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCCCeEEEECCCH-----HHHHHHHHHHhCCCCEEEEec
Confidence 5667778999987773 347899999999999999864
No 372
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=44.64 E-value=1.8e+02 Score=27.13 Aligned_cols=108 Identities=12% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
+++||+++..+...-+..++.-.+.=.-.+.=+.+++.......+++..| +.+..++........
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~g-----------Ip~~~~~~~~~~~~~---- 147 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFG-----------IPFHYIPATKDNRVE---- 147 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhC-----------CCEEEcCCCCcchhh----
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
....+.+.+++. ++|+||.-.+.. ....+-+.+.-.++-++++
T Consensus 148 ------------~e~~~~~~l~~~--~~Dlivlagym~il~~~~l~~~~~~iINiHpS 191 (280)
T TIGR00655 148 ------------HEKRQLELLKQY--QVDLVVLAKYMQILSPDFVKRYPNKIINIHHS 191 (280)
T ss_pred ------------hHHHHHHHHHHh--CCCEEEEeCchhhCCHHHHhhccCCEEEecCC
No 373
>PRK07773 replicative DNA helicase; Validated
Probab=44.59 E-value=79 Score=34.94 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCccchhHHhhc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHA-GIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~ 52 (460)
=|++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+...
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 47888889999999999999988754 8999999987776666544
No 374
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.33 E-value=29 Score=33.17 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
++|||.|+-.|..| .++|..|.++||+|+++..
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r 35 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWAR 35 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 36799999888877 4688999999999999986
No 375
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=44.09 E-value=26 Score=30.05 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
||++...|+.| .+-...+.+.|+++|++|.++.++.-
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 78888888754 55667999999999999999998443
No 376
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=44.02 E-value=51 Score=29.44 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCe-EEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIK-ITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~-Vt~~~~ 42 (460)
|.-|+|.-.|..|--.....|.++|.++||+ +..+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 4578999999999999999999999999987 444433
No 377
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=43.93 E-value=61 Score=28.32 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (460)
-|+|+-..+-|-..-..+||..++.+|.+|.+++.+.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 345555568899999999999999999999999985553
No 378
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=43.55 E-value=42 Score=32.03 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=30.2
Q ss_pred CcHHHHHHHHcCCCCccEEEEcCCcch----------HHHHHHHhCCceEEEec
Q 012587 97 TPPLLKEMVSDSKSPVNCIITDGYMSR----------AIDAAREVGVSIIYFRT 140 (460)
Q Consensus 97 ~~~~l~~~~~~~~~~pD~vv~D~~~~~----------~~~~A~~lgiP~v~~~~ 140 (460)
....+.++++++ +||++|+...+-. +..+.++++||.++-..
T Consensus 68 a~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 68 ALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 345566777776 9999999987652 23356799999997543
No 379
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=43.50 E-value=2.1e+02 Score=26.76 Aligned_cols=106 Identities=8% Similarity=0.002 Sum_probs=56.6
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccc
Q 012587 266 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSA 345 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~ 345 (460)
++.+..+.+|.+. ..++..+...|.++.+.-.. +...............+....+++..++
T Consensus 151 gk~v~IiG~G~iG-------~avA~~L~~~G~~V~v~~R~------------~~~~~~~~~~g~~~~~~~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTG-------MTIARTFSALGARVFVGARS------------SADLARITEMGLIPFPLNKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHH-------HHHHHHHHHCCCEEEEEeCC------------HHHHHHHHHCCCeeecHHHHHHHhccCC
Confidence 5688889999876 67778888888876554321 1111111111222233434466788888
Q ss_pred cccccccCChhHHHHHHHhCC--ceecccccccchhh-HHHHHhhhceeee
Q 012587 346 VGGFLTHCGWNSTLESIVAGM--PMICWPSFADQQIN-SRFVGEVWKLGLD 393 (460)
Q Consensus 346 ~~~~I~HGG~gs~~eal~~Gv--P~l~~P~~~DQ~~n-a~~~~e~~G~g~~ 393 (460)
+ +|.|...+.+.+...... -.+++=...+.... -+.+ +++|+-..
T Consensus 212 i--Vint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf~~A-k~~G~~a~ 259 (287)
T TIGR02853 212 I--VINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDFEYA-KKRGIKAL 259 (287)
T ss_pred E--EEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCHHHH-HHCCCEEE
Confidence 7 998887765444332222 23444333222111 1333 56677655
No 380
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=43.28 E-value=49 Score=31.05 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCCCH----HHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLPAVGHV----NSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~----~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.++||+++..|....- ....+++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 4679999998754432 3345789999999999988753
No 381
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.20 E-value=63 Score=26.17 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=37.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHH
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (460)
+.||++...+..+|-..--=++..|...|.+|...+.....+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 56999999999999999999999999999999998864333333
No 382
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=43.10 E-value=1.4e+02 Score=28.72 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=55.4
Q ss_pred EEEEEcCCCCC--C---HHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCC
Q 012587 8 HVAILPLPAVG--H---VNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (460)
Q Consensus 8 ~il~~~~~~~G--h---~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (460)
-|+|.|..+.| - ..-+..|++.|.++|++|.+++++...+...+... . .+......
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~-------------~--~~~~~~~~---- 242 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA-------------A--LNTEQQAW---- 242 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH-------------h--cccccccc----
Confidence 45666643222 1 23478999999988999999988654443332211 0 00000000
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
..+ +.. .-.+.++..-+ .+.|++|+.- .....+|..+|+|+|.+..
T Consensus 243 ~~~-------l~g--~~sL~el~ali-~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 243 CRN-------LAG--ETQLEQAVILI-AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred eee-------ccC--CCCHHHHHHHH-HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 000 000 01123333322 3568998763 3578999999999999765
No 383
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=43.02 E-value=2.1e+02 Score=26.43 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
|.=|+++-.|+.|--.....|.+.|.+.|.+|.++.. +... +.+. .+. .. .
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~-~~~~-~~~~---------------------~y~-----~~-~ 51 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISD-DSLG-IDRN---------------------DYA-----DS-K 51 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-T-HHHH--TTS---------------------SS-------G-G
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcc-cccc-cchh---------------------hhh-----ch-h
Confidence 4468888889999999999999999999999999874 2211 1110 000 00 1
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEEecchhHH
Q 012587 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTISACA 145 (460)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~ 145 (460)
-....+. .....+...+.. -++||.|.... -..-+|+..+.+++.++...+.-
T Consensus 52 ~Ek~~R~---~l~s~v~r~ls~----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e 110 (270)
T PF08433_consen 52 KEKEARG---SLKSAVERALSK----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLE 110 (270)
T ss_dssp GHHHHHH---HHHHHHHHHHTT-----SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HH
T ss_pred hhHHHHH---HHHHHHHHhhcc----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 1111111 122334444433 38999998765 35778999999998887765543
No 384
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=42.52 E-value=28 Score=30.79 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcc-------hHHHHHHHhCCceEEEecc
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMS-------RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~-------~~~~~A~~lgiP~v~~~~~ 141 (460)
+.+.+.++.+...||+|+.|.+.. .|..+...+++|+|-+.=.
T Consensus 81 p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 81 PPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 446677777645799999998865 2555556777888886443
No 385
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=42.51 E-value=59 Score=30.41 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
..+|+++-+|++||.. |.-|+..|.+|.+...+.
T Consensus 18 gK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g 51 (338)
T COG0059 18 GKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKG 51 (338)
T ss_pred CCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCC
Confidence 3599999999999976 567899999999988644
No 386
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=42.35 E-value=1.9e+02 Score=23.71 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=20.9
Q ss_pred cccccCCh------hHHHHHHHhCCceecccc
Q 012587 348 GFLTHCGW------NSTLESIVAGMPMICWPS 373 (460)
Q Consensus 348 ~~I~HGG~------gs~~eal~~GvP~l~~P~ 373 (460)
++++|+|- +.+.+|...++|+|++..
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 48888663 478899999999999964
No 387
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.27 E-value=1.5e+02 Score=28.58 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchh
Q 012587 103 EMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 103 ~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 143 (460)
+..++. ++|+||.=.-.. .+-.+|..+++|+|.+-|...
T Consensus 72 ~~~~~~--~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~g 113 (345)
T cd08171 72 KNPAVQ--EADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIAS 113 (345)
T ss_pred HHHhhc--CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCccc
Confidence 344444 999999654433 566777778999999887653
No 388
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=42.22 E-value=33 Score=33.68 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHH
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (460)
.+||++...|+.|= +-.+.+.+.|.+.|++|.++.++.-.+.+
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 46899998887555 55899999999999999999985544444
No 389
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=42.06 E-value=2.1e+02 Score=25.84 Aligned_cols=35 Identities=6% Similarity=0.062 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCCHHHHH--HHHHHHHhCCCeEEEEeC
Q 012587 8 HVAILPLPAVGHVNSML--NLAELLGHAGIKITFLNT 42 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l--~La~~L~~rGH~Vt~~~~ 42 (460)
||+++......++...+ .+-+++.++|.++.+...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAA 37 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEcc
Confidence 46666655555555433 566777888888877653
No 390
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=41.99 E-value=1.4e+02 Score=25.79 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC--CCCCCCCCCCCCChHH-HHHHHHhh
Q 012587 20 VNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT--DGLPRDHPRTPDKFPE-LVDSLNCA 96 (460)
Q Consensus 20 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~ 96 (460)
-.-.+.+|+.|.+.|.++. . +...++.+.+. ++.+..+. .++|+......+++-. ...-+...
T Consensus 10 K~~l~~lAk~L~~lGf~I~-A-T~GTAk~L~e~------------GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~ 75 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-S-TGGTAKFLKEA------------GIPVTDVSDITGFPEILGGRVKTLHPKIHGGILAR 75 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-E-ccHHHHHHHHc------------CCeEEEhhhccCCcHhhCCccccCChhhhhhhhcC
Confidence 3447899999999999984 4 44677777665 35555554 3555543333333322 22222221
Q ss_pred --CcHHHHHHHHcCC-CCccEEEEcCCc
Q 012587 97 --TPPLLKEMVSDSK-SPVNCIITDGYM 121 (460)
Q Consensus 97 --~~~~l~~~~~~~~-~~pD~vv~D~~~ 121 (460)
....+ -+++.+ ...|+||++..-
T Consensus 76 ~~~~~~~--~~~~~~i~~idlVvvNlYp 101 (187)
T cd01421 76 RDNEEHK--DLEEHGIEPIDLVVVNLYP 101 (187)
T ss_pred CCChhHH--HHHHcCCCCeeEEEEcccC
Confidence 12222 344442 578999988543
No 391
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=41.74 E-value=1.8e+02 Score=28.28 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCC-CeEEEEeCcc
Q 012587 23 MLNLAELLGHAG-IKITFLNTEH 44 (460)
Q Consensus 23 ~l~La~~L~~rG-H~Vt~~~~~~ 44 (460)
.-.|+..|.+.| .+|.+++...
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~ 33 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPG 33 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcc
Confidence 446778888876 7888887644
No 392
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.74 E-value=33 Score=32.42 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
..|||+|+-.|..| .++|+.|.++||+|+++..
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSR 35 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 35799999888776 4789999999999999876
No 393
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.72 E-value=61 Score=24.77 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|+||+++|..+.+-=.=.-.+-++...+|-++++-..
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~ 37 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAY 37 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEe
Confidence 5799999999888776667777888889999998765
No 394
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=41.63 E-value=35 Score=34.38 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 1 ~~~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|+..+++||+|+-.|..| +-++|+.|+++|++|+..-.
T Consensus 2 ~~~~~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~ 39 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDL 39 (461)
T ss_pred CCcCCCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECC
Confidence 455566799999999866 33489999999999988653
No 395
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=41.47 E-value=1.5e+02 Score=25.33 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=63.0
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhccc
Q 012587 265 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHS 344 (460)
Q Consensus 265 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~ 344 (460)
.++.+-.+.+|.++ +.+++.++..|.+++..-.. ...... ..-....+.+.+++++.+
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~-----------~~~~~~----~~~~~~~~~~l~ell~~a 92 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRS-----------PKPEEG----ADEFGVEYVSLDELLAQA 92 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESS-----------CHHHHH----HHHTTEEESSHHHHHHH-
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEeccc-----------CChhhh----cccccceeeehhhhcchh
Confidence 46889999999988 77888888899988776532 111100 011123777899999999
Q ss_pred ccccccccCChhHHHHHHHhCCceeccccc--ccchhhHHHHHhhhceeeeec-----CCcchHHHHHHHH
Q 012587 345 AVGGFLTHCGWNSTLESIVAGMPMICWPSF--ADQQINSRFVGEVWKLGLDIK-----DLCDRNIVEKAVN 408 (460)
Q Consensus 345 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~~~e~~G~g~~~~-----~~~~~~~l~~~i~ 408 (460)
++ ++.|. |.. ..+..|+..+ ++++=|..+- .-.+.+.|.++++
T Consensus 93 Di--v~~~~------------------plt~~T~~li~~~~l-~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 93 DI--VSLHL------------------PLTPETRGLINAEFL-AKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SE--EEE-S------------------SSSTTTTTSBSHHHH-HTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hh--hhhhh------------------ccccccceeeeeeee-eccccceEEEeccchhhhhhhHHHHHHh
Confidence 97 76664 433 3567788888 4777654442 2566666666654
No 396
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=41.26 E-value=93 Score=32.27 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=40.8
Q ss_pred cChHhhhcccccccccccCC-h-hHHHHHHHhCCceecccccc-cchhhH---HHHHhhhceeeeecCCcchHHHHHHHH
Q 012587 335 VPQEEVLAHSAVGGFLTHCG-W-NSTLESIVAGMPMICWPSFA-DQQINS---RFVGEVWKLGLDIKDLCDRNIVEKAVN 408 (460)
Q Consensus 335 vp~~~il~~~~~~~~I~HGG-~-gs~~eal~~GvP~l~~P~~~-DQ~~na---~~~~e~~G~g~~~~~~~~~~~l~~~i~ 408 (460)
+++.+++..|++++|-+-== | =|=+||.++|||.|..=..+ -++.+- ... ..|+-+.=+...+.++..+.+.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~--~~GV~VvdR~~~n~~e~v~~la 538 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPE--EYGVYVVDRRDKNYDESVNQLA 538 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHG--GGTEEEE-SSSS-HHHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCc--CCcEEEEeCCCCCHHHHHHHHH
Confidence 46888888888866665211 2 38899999999999887643 222111 222 3466655555555555555555
Q ss_pred HHH
Q 012587 409 DLM 411 (460)
Q Consensus 409 ~~l 411 (460)
..|
T Consensus 539 ~~l 541 (633)
T PF05693_consen 539 DFL 541 (633)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 397
>PRK05246 glutathione synthetase; Provisional
Probab=40.80 E-value=44 Score=31.73 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=30.5
Q ss_pred CcEEEEEcCC---CCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPLP---AVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~~---~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+|||+|+.-| -.-..+.+.+|+++-.++||+|.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 3689888875 22334678899999999999999999733
No 398
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.54 E-value=30 Score=32.27 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
++.||.|+-.|..| ..+|..|+++||+|+++..
T Consensus 2 ~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~ 34 (287)
T PRK08293 2 DIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDI 34 (287)
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeC
Confidence 45699999888877 5688899999999999975
No 399
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=40.53 E-value=2.1e+02 Score=29.12 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=66.6
Q ss_pred eeeeecChHh---hhcccccccccc--cCChhHH-HHHHHhCC----ceecccccccchhhHHHHHhhhceeeeecCCcc
Q 012587 330 CIAGWVPQEE---VLAHSAVGGFLT--HCGWNST-LESIVAGM----PMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 399 (460)
Q Consensus 330 ~~~~~vp~~~---il~~~~~~~~I~--HGG~gs~-~eal~~Gv----P~l~~P~~~DQ~~na~~~~e~~G~g~~~~~~~~ 399 (460)
++.+.+|+.+ ++..+++ ++|| .-|+|.+ .|.++++. |+|+--+. -|. +.+.-++.+ ...+
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa---~~l~~AllV-NP~d 434 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA---VELKGALLT-NPYD 434 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch---hhcCCCEEE-CCCC
Confidence 4457788765 5567777 4444 4588854 59999987 44433222 222 234445666 6689
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 012587 400 RNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 453 (460)
Q Consensus 400 ~~~l~~~i~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 453 (460)
.+.++++|.++|+....+=+++.+++.+.++.. ....=+++++++|...
T Consensus 435 ~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 435 PVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSPQ 483 (487)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhhc
Confidence 999999999999942234455555555555542 2244467777777543
No 400
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=40.46 E-value=69 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
||++..-|+.|--.....+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5888889999999999999999999999999988744
No 401
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=40.42 E-value=50 Score=30.81 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
+||.|+-.|..| .++|+.|.++||+|+++...
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 488999888877 58899999999999999853
No 402
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=40.34 E-value=42 Score=34.41 Aligned_cols=35 Identities=6% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 100 ~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
.+.+.+++. +||+|+.+.. ...+|+++|||++.+.
T Consensus 353 el~~~i~~~--~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 445556665 9999998853 6778999999998765
No 403
>PRK13604 luxD acyl transferase; Provisional
Probab=40.19 E-value=59 Score=30.68 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~ 41 (460)
..+.++++.|..++-.-+..+|+.|.++|..|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 347788899988888779999999999999998874
No 404
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.14 E-value=67 Score=28.02 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=29.5
Q ss_pred cEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+|++.++. ++-|-..-...||.+|+++|++|.++-...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 55544444 577788889999999999999999986533
No 405
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=40.11 E-value=54 Score=25.34 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|.||+++|..+.+--.-.-.+-+.+.++|.++.+-..
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~ 37 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAI 37 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 4589999998875555555666667778888777543
No 406
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=40.02 E-value=1.2e+02 Score=31.17 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCCHH---HHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 17 VGHVN---SMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 17 ~Gh~~---p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
.||+. ..-.++++|+.+|++|.+++....++.+.+
T Consensus 39 iG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRk 76 (510)
T PRK00750 39 IGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRK 76 (510)
T ss_pred cccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccc
Confidence 35554 455789999999999999998776665443
No 407
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=39.97 E-value=1.7e+02 Score=29.83 Aligned_cols=124 Identities=11% Similarity=0.091 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecC--CCCCCCCCCCC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT--DGLPRDHPRTP 83 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 83 (460)
|+++++...- -.-++.+|+.|.+.|.++. ++...++.+.+. ++.+..+. +++|+-.....
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~------------GI~v~~V~k~TgfpEil~GRV 65 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKALVELGVEIL--STGGTAKLLAEA------------GIPVTEVSDVTGFPEILDGRV 65 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHHHHCCCEEE--EcchHHHHHHHC------------CCeeEEeecccCCchhcCCcc
Confidence 4566666654 3458899999999999984 445778888765 35554444 35565433333
Q ss_pred CChHHH-HHHHHh-h-CcHHHHHHHHcCC-CCccEEEEcCCcch----------------------HHHHHHHhCCceEE
Q 012587 84 DKFPEL-VDSLNC-A-TPPLLKEMVSDSK-SPVNCIITDGYMSR----------------------AIDAAREVGVSIIY 137 (460)
Q Consensus 84 ~~~~~~-~~~~~~-~-~~~~l~~~~~~~~-~~pD~vv~D~~~~~----------------------~~~~A~~lgiP~v~ 137 (460)
+++-.. ..-+.. . ....+ +-+++.+ ...|+||++.+-+. ++.-|..-+-..|.
T Consensus 66 KTLHP~IhgGiLa~r~~~~h~-~~l~~~~i~~IDlVvvNLYPF~~tv~~~~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~ 144 (513)
T PRK00881 66 KTLHPKIHGGILARRDNPEHV-AALEEHGIEPIDLVVVNLYPFEETVAKPGVTLEEAIENIDIGGPTMVRAAAKNHKDVA 144 (513)
T ss_pred ccCCchhhhhhccCCCCHHHH-HHHHHcCCCceeEEEEeCcChHHHhccCCCCHHHHHhcccCCcHHHHHHHHhCCCCEE
Confidence 333222 222221 1 12232 2333332 47799988855331 12223344566777
Q ss_pred EecchhHHHHH
Q 012587 138 FRTISACAFWS 148 (460)
Q Consensus 138 ~~~~~~~~~~~ 148 (460)
+.+.|..+...
T Consensus 145 Vv~dp~dY~~v 155 (513)
T PRK00881 145 VVVDPADYDAV 155 (513)
T ss_pred EECCHHHHHHH
Confidence 77766555433
No 408
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=39.90 E-value=78 Score=32.89 Aligned_cols=82 Identities=10% Similarity=-0.004 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecC-hHhhh-------cccccccccccCC
Q 012587 283 DQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVP-QEEVL-------AHSAVGGFLTHCG 354 (460)
Q Consensus 283 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp-~~~il-------~~~~~~~~I~HGG 354 (460)
...+.+++.|++.|.+.++.+.++... .+-+.+.+ .++++++.-.. +.+.+ .+....++++|.|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~------~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~G 85 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAIL------PLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSG 85 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccH------HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCC
Confidence 345667777777777777766532111 12122210 12343332111 11111 1122334787777
Q ss_pred h------hHHHHHHHhCCceeccc
Q 012587 355 W------NSTLESIVAGMPMICWP 372 (460)
Q Consensus 355 ~------gs~~eal~~GvP~l~~P 372 (460)
- +.+++|...++|+|++.
T Consensus 86 pG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 86 PGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 47899999999999985
No 409
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=39.88 E-value=2.4e+02 Score=26.44 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+..|+|.-.++-|--.-+..|+..|.++|+.|.++..+.
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 446667766799999999999999999999999988644
No 410
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.81 E-value=51 Score=30.21 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
..|.|+.=|+-|-..-...||.+|+++|++|.++=...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 36788866899999999999999999999999997644
No 411
>PRK06703 flavodoxin; Provisional
Probab=39.73 E-value=52 Score=27.14 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCCHHHHH-HHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSML-NLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l-~La~~L~~rGH~Vt~~~~ 42 (460)
||||+++-....|+..-+. .|++.|...|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 5688777777889888755 678889889999988754
No 412
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=39.58 E-value=59 Score=30.53 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=32.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|.+|.|..=|+-|-..-...||.+|+++|++|.++-...
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 346677766899999999999999999999999996533
No 413
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=39.58 E-value=2.3e+02 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=23.0
Q ss_pred CccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 111 PVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 111 ~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
+.|++|+. -...+.+|..+|+|+|.+..
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 66999977 34588999999999999764
No 414
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=39.48 E-value=1.9e+02 Score=25.95 Aligned_cols=45 Identities=16% Similarity=-0.065 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
.-+++.-.|+.|--.-.+.++.+-.++|-.+.|++.++..+.+.+
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 456777778999888888877776688999999998887766655
No 415
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.01 E-value=67 Score=26.79 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=27.0
Q ss_pred CCCccEEEEcCCcc----------hHHHHHHHhCCceEEEecchh
Q 012587 109 KSPVNCIITDGYMS----------RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 109 ~~~pD~vv~D~~~~----------~~~~~A~~lgiP~v~~~~~~~ 143 (460)
++.||+|++...+- -+..+|+++|+|++-.+....
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 68999999875432 477889999999998766543
No 416
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=38.93 E-value=1.6e+02 Score=30.04 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~r--GH~Vt~~~~ 42 (460)
||||++-.|++.| +|+.+|++. |++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6999999998877 578888876 999888854
No 417
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.87 E-value=1.9e+02 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCccEEEEcCCcc-----hHHHHHHHhCCceEEEe
Q 012587 100 LLKEMVSDSKSPVNCIITDGYMS-----RAIDAAREVGVSIIYFR 139 (460)
Q Consensus 100 ~l~~~~~~~~~~pD~vv~D~~~~-----~~~~~A~~lgiP~v~~~ 139 (460)
.=..+++++ ++|+||+=-..- .=..+|..+|||+|.+.
T Consensus 188 ~n~al~~~~--~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~ 230 (256)
T TIGR00715 188 LEKALLREY--RIDAVVTKASGEQGGELEKVKAAEALGINVIRIA 230 (256)
T ss_pred HHHHHHHHc--CCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEe
Confidence 337888888 999999754322 33678999999999964
No 418
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=38.68 E-value=57 Score=26.28 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=23.8
Q ss_pred cEEEEEcC-CCCCCH--HHHHHHHHHHHhCCCeE-EEEeC
Q 012587 7 VHVAILPL-PAVGHV--NSMLNLAELLGHAGIKI-TFLNT 42 (460)
Q Consensus 7 ~~il~~~~-~~~Gh~--~p~l~La~~L~~rGH~V-t~~~~ 42 (460)
|||+|+-. +-+|+- .-.+.+|+++.++||+| .++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 46655433 333444 45778899999999994 66655
No 419
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.65 E-value=37 Score=33.76 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
..+.+++++. +||+++.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3456666666 9999999875 6678999999998764
No 420
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=38.60 E-value=2.6e+02 Score=27.55 Aligned_cols=136 Identities=10% Similarity=0.122 Sum_probs=74.1
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCC-ceeeee-------cCh
Q 012587 266 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKER-GCIAGW-------VPQ 337 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~~~~~-------vp~ 337 (460)
++.+++.-.||+... ....+++.|.+.|+++-+++... ...-+.+...+...++ ++..-| +.+
T Consensus 6 ~k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~------A~~fi~~~~l~~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 6 GKRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEA------AKKFVTPLTFQALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CCeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHh------HHHHHhHHHHHHhhCCceEccccccccCCCcch
Confidence 456777666766421 33446677777787775655421 0001111112233444 322112 234
Q ss_pred HhhhcccccccccccCChhHHHH-------------HHHhCCceecccccc----c---chhhHHHHHhhhceeeeec--
Q 012587 338 EEVLAHSAVGGFLTHCGWNSTLE-------------SIVAGMPMICWPSFA----D---QQINSRFVGEVWKLGLDIK-- 395 (460)
Q Consensus 338 ~~il~~~~~~~~I~HGG~gs~~e-------------al~~GvP~l~~P~~~----D---Q~~na~~~~e~~G~g~~~~-- 395 (460)
-.+...+++ .+|.=+-.||+.. ++.+++|++++|... + -..|-.++. +.|+-+.-+
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~-~~G~~ii~P~~ 154 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLR-SRGVEIIGPAS 154 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHH-HCCCEEECCCC
Confidence 444445565 5666666555433 466799999999543 2 245777784 667665443
Q ss_pred -----------CCcchHHHHHHHHHHHh
Q 012587 396 -----------DLCDRNIVEKAVNDLMV 412 (460)
Q Consensus 396 -----------~~~~~~~l~~~i~~~l~ 412 (460)
+-.+.++|...+.+.+.
T Consensus 155 g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 155 GRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 23567888777877764
No 421
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.37 E-value=31 Score=34.62 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|||+|+-.|- --|+-|.+|+++||+||++=...
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccC
Confidence 5788776664 34888999999999999986533
No 422
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=38.31 E-value=25 Score=34.61 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCCHHHHH---HHHHHHHhCCCeEEEEeCccc
Q 012587 17 VGHVNSML---NLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 17 ~Gh~~p~l---~La~~L~~rGH~Vt~~~~~~~ 45 (460)
.||++|++ .+++-++.+||+|.|+++.+.
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 49999877 578888899999999997443
No 423
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=38.24 E-value=2.1e+02 Score=27.56 Aligned_cols=32 Identities=41% Similarity=0.459 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGI-KITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH-~Vt~~~~ 42 (460)
.+||+++-.|+.| -.+|+.|++.|+ +++++-.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 4689999888877 678999999998 6776644
No 424
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.24 E-value=44 Score=34.24 Aligned_cols=36 Identities=3% Similarity=0.075 Sum_probs=27.4
Q ss_pred HHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 100 ~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
.+.+.+++. +||+|+.+.. ...+|+++|||++.+..
T Consensus 355 ei~~~i~~~--~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhc--CCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 444555555 8999999963 67789999999988654
No 425
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=38.16 E-value=1.1e+02 Score=28.29 Aligned_cols=87 Identities=10% Similarity=0.100 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcHH
Q 012587 21 NSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPL 100 (460)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (460)
.-+..|++.|.++|++|.+++++...+...+... .+ .-+... ......+ ..+
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~----------~~---~~~~~~---~~~~~~~------------l~e 191 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAA----------AL---GGPRVV---NLAGKTS------------LRE 191 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH----------hc---CCCccc---cCcCCCC------------HHH
Confidence 3478999999999999999987654443332210 00 000000 0000001 122
Q ss_pred HHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecc
Q 012587 101 LKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 101 l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (460)
+-.+++ +.|++|+-- .....+|..+|+|++.+...
T Consensus 192 ~~~li~----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 192 LAALLA----RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 333333 568888652 25788889999999998653
No 426
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=38.06 E-value=76 Score=28.44 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
-+++.-.++-|--.-...++....++|..|.|++.+...+.+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 45666777899999999998887789999999998777665544
No 427
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=38.00 E-value=1.3e+02 Score=29.88 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEE
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFL 40 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~r-GH~Vt~~ 40 (460)
|||+++-.|++.| +|+++|++. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 6999999997766 599999886 4444444
No 428
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=37.98 E-value=1.7e+02 Score=29.52 Aligned_cols=97 Identities=9% Similarity=0.068 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
.|||++-.|.. .+.+++++++.|+++..+.+..+.....-. .. =+.+.++....
T Consensus 3 ~kvLi~~~gei-----a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~----------~a-D~~~~i~~~~~---------- 56 (472)
T PRK07178 3 KKILIANRGEI-----AVRIVRACAEMGIRSVAIYSEADRHALHVK----------RA-DEAYSIGADPL---------- 56 (472)
T ss_pred cEEEEECCcHH-----HHHHHHHHHHcCCeEEEEeCCCccCCccHh----------hC-CEEEEcCCCch----------
Confidence 48888855432 578999999999999998875432111000 00 11222322100
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc----hHHHHHHHhCCceEE
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIY 137 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~----~~~~~A~~lgiP~v~ 137 (460)
..+. -.+.+.++.++. ++|+|+....+. ....+++.+|+|++.
T Consensus 57 ----~~y~--d~~~i~~~a~~~--~~D~I~pg~g~lse~~~~a~~~e~~Gi~~ig 103 (472)
T PRK07178 57 ----AGYL--NPRRLVNLAVET--GCDALHPGYGFLSENAELAEICAERGIKFIG 103 (472)
T ss_pred ----hhhc--CHHHHHHHHHHH--CCCEEEeCCCCcccCHHHHHHHHHcCCCccC
Confidence 0000 124556666665 899999653111 234567788988875
No 429
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=37.91 E-value=59 Score=30.13 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|.+|.|+-=|+-|-..-.+.||.+|+++|++|.++-.+.
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 447888866899999999999999999999999996533
No 430
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=37.88 E-value=31 Score=31.01 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 012587 24 LNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~ 42 (460)
.+||++|.++|++|+++..
T Consensus 29 ~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHCCCEEEEEcC
Confidence 4889999999999998754
No 431
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=37.61 E-value=59 Score=27.88 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=36.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
..++|.-.++.|-..=..++++++.++|+.|.|++.+...+.+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 478888888999999999999999999999999998776666643
No 432
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=37.59 E-value=1.8e+02 Score=28.61 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
||||++-.|++-| +||..|++.+-.-.+++.+.|
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN 34 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGN 34 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCC
Confidence 6999999999999 589999987755555555454
No 433
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=37.57 E-value=1.7e+02 Score=23.07 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=15.0
Q ss_pred CcHHHHHHHHcCCCCccEEEEcC
Q 012587 97 TPPLLKEMVSDSKSPVNCIITDG 119 (460)
Q Consensus 97 ~~~~l~~~~~~~~~~pD~vv~D~ 119 (460)
....+.++++++ +||+|++-.
T Consensus 88 ~~~~l~~~i~~~--~p~~V~t~~ 108 (128)
T PF02585_consen 88 LVRDLEDLIREF--RPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHH---ESEEEEE-
T ss_pred HHHHHHHHHHHc--CCCEEEECC
Confidence 446678888887 999998764
No 434
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.51 E-value=1.8e+02 Score=29.02 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+||+++-.+.. .+.+++++++.|++|.++.+..
T Consensus 3 ~~ililg~g~~-----~~~~~~~a~~lG~~~v~~~~~~ 35 (450)
T PRK06111 3 QKVLIANRGEI-----AVRIIRTCQKLGIRTVAIYSEA 35 (450)
T ss_pred ceEEEECCcHH-----HHHHHHHHHHcCCeEEEEechh
Confidence 58888866654 3788889999999999987633
No 435
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.39 E-value=52 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcch--HHHHHHHhCCceEEEec
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSR--AIDAAREVGVSIIYFRT 140 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~--~~~~A~~lgiP~v~~~~ 140 (460)
..++.+++. +||+||....... ....-+..|||++.+..
T Consensus 60 ~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 455666654 9999998654332 44445789999988753
No 436
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=37.33 E-value=69 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
+|++.+..+.+|-.----++..|..+|++|..++..-..+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 588899999999999988999999999999999865555555444
No 437
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.32 E-value=51 Score=32.85 Aligned_cols=35 Identities=6% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 101 LKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 101 l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
+.+++++. +||++|.+.. ...+|+++|+|++.+..
T Consensus 362 ~~~~i~~~--~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 362 VGDMIART--EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHhh--CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 45555554 8999999974 55678999999998754
No 438
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=37.27 E-value=2.3e+02 Score=27.75 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
.||++. |+-...+.|++.|.+.|-+|..+......+...+........ . ...+.. .
T Consensus 272 ~~v~i~-----~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~---~-~~~v~~------------~--- 327 (398)
T PF00148_consen 272 KRVAIY-----GDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEE---S-DPEVII------------D--- 327 (398)
T ss_dssp -EEEEE-----SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHT---T-CSEEEE------------S---
T ss_pred ceEEEE-----cCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhC---C-CcEEEe------------C---
Confidence 467763 344667789999999999998888645433222110000000 0 000000 0
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
.....+.+++++. +||+++.+.. ...+|+++++|++.+..
T Consensus 328 ---------~~~~~~~~~l~~~--~pdl~ig~~~---~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 328 ---------PDPEEIEELLEEL--KPDLLIGSSH---ERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp ---------CBHHHHHHHHHHH--T-SEEEESHH---HHHHHHHTT--EEE-SS
T ss_pred ---------CCHHHHHHHHHhc--CCCEEEechh---hHHHHHHhCCCeEEEeC
Confidence 0124567777776 9999999954 77889999899888543
No 439
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=37.26 E-value=70 Score=28.94 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 3 KQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 3 ~~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+.++++|+++-.. | .--..|++.|.++||+|+.++.
T Consensus 14 ~~~~~~ilItGas--G--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVAGAT--G--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEECCC--c--HHHHHHHHHHHhCCCEEEEEec
Confidence 4566788776542 2 2235788899999999988764
No 440
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=37.24 E-value=75 Score=25.01 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCCHHHHH---HHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSML---NLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l---~La~~L~~rGH~Vt~~~~ 42 (460)
||||++++....|-...++ +|.++-.++||++.+=+.
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~q 41 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQ 41 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4788888887778777776 677777889999998775
No 441
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=37.23 E-value=33 Score=32.41 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+++||+|+-.|..| .++|..|+++||+|+++..
T Consensus 1 ~~~~V~VIG~G~mG-----~~iA~~la~~G~~V~v~d~ 33 (308)
T PRK06129 1 PMGSVAIIGAGLIG-----RAWAIVFARAGHEVRLWDA 33 (308)
T ss_pred CCcEEEEECccHHH-----HHHHHHHHHCCCeeEEEeC
Confidence 35689998777655 4688899999999999975
No 442
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.21 E-value=50 Score=33.84 Aligned_cols=35 Identities=6% Similarity=0.097 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 100 ~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
.+.+.+++. +||+|+.+.. ...+|+++|||++.++
T Consensus 365 ei~~~I~~~--~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV--EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc--CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 445666665 8999999963 5667999999998865
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=37.18 E-value=2.2e+02 Score=27.12 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
--|+|+-.++-|-.--+..||..|+.+|++|.+++.+.+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 355667667999999999999999999999999987543
No 444
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=37.14 E-value=1.3e+02 Score=27.94 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCeEEEEeCccc
Q 012587 24 LNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
.++|..++++|++|.++.....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~ 24 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCC
Confidence 4688899999999999998543
No 445
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=36.97 E-value=42 Score=23.44 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 012587 24 LNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~ 42 (460)
+..|..|+++|++|+++=.
T Consensus 9 l~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHCCCcEEEEec
Confidence 6778999999999999864
No 446
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=36.91 E-value=55 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
.++||+++-.|-.| +++++.|+++|++|++.-...+
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 37899999999888 9999999999999999985343
No 447
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=36.74 E-value=65 Score=29.58 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=31.8
Q ss_pred cHHHHHHHHcCCCCccEEEEcCCcc------hHHHHHHHhCCceEEEecc
Q 012587 98 PPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 98 ~~~l~~~~~~~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (460)
...+.+.++.. ++|+|++.-.+. -+..+|+.||+|+++...-
T Consensus 100 a~~Laa~~~~~--~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 100 AKALAAAVKKI--GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHHhc--CCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 34556667776 999999765443 5899999999999996553
No 448
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.63 E-value=3.5e+02 Score=29.33 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=31.1
Q ss_pred cEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 7 VHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 7 ~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
.||+.++. |+-|--.-...||..|+..|++|.++-.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 46555544 6889999999999999999999999976433
No 449
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.54 E-value=2.8e+02 Score=25.93 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
+.+||+++..+...-+.-++.-.+.=.-.+.=+.+++..+.....++..| +.+..++........
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~g-----------Ip~~~~~~~~~~~~~---- 156 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHD-----------IPFHHLPVTPDTKAQ---- 156 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcC-----------CCEEEeCCCcccccc----
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
....+.+.++++ ++|+||.-.+.. ....+-+.+.-.++-++++
T Consensus 157 ------------~~~~~~~~l~~~--~~Dlivlagym~il~~~~l~~~~~~iiNiHpS 200 (289)
T PRK13010 157 ------------QEAQILDLIETS--GAELVVLARYMQVLSDDLSRKLSGRAINIHHS 200 (289)
T ss_pred ------------hHHHHHHHHHHh--CCCEEEEehhhhhCCHHHHhhccCCceeeCcc
No 450
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=36.31 E-value=70 Score=28.48 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=27.0
Q ss_pred CcEEEEEcCC----CCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 6 HVHVAILPLP----AVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 6 ~~~il~~~~~----~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
|+||+++..+ ..-...=++.--..|.+.|++|+++++.
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~ 42 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPD 42 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCC
Confidence 3588887652 1124445667788999999999999973
No 451
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.17 E-value=37 Score=32.34 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|||.|+-.|+.| ..+|..|.+.||+|+++..
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r 31 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGR 31 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEec
Confidence 488888888876 4678899999999999886
No 452
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.13 E-value=3.3e+02 Score=24.64 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=23.2
Q ss_pred HHHHHHcCCCCccEEEEcCCcch----HHHHHHHhCCceEEEec
Q 012587 101 LKEMVSDSKSPVNCIITDGYMSR----AIDAAREVGVSIIYFRT 140 (460)
Q Consensus 101 l~~~~~~~~~~pD~vv~D~~~~~----~~~~A~~lgiP~v~~~~ 140 (460)
++.++.. ++|.||....... ....+...|||+|.+..
T Consensus 48 i~~~~~~---~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 48 VEDLLTR---GVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHc---CCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence 3444444 8998887543321 23445678999999864
No 453
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=36.13 E-value=2.8e+02 Score=23.77 Aligned_cols=89 Identities=8% Similarity=0.009 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCccc-hhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCChHHHHHHHHhhCcHHH
Q 012587 23 MLNLAELLGHAGIKITFLNTEHY-YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLL 101 (460)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (460)
+..|.+...++|+.|.++++.+. .+.+.+.... ++|++.+... .++-.. ...+.+
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~------~yP~l~i~g~-~g~f~~-----------------~~~~~i 92 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIK------EYPKLKIVGA-FGPLEP-----------------EERKAA 92 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHH------HCCCCEEEEE-CCCCCh-----------------HHHHHH
Confidence 44566666778999999986332 2222222111 1667777655 221100 011334
Q ss_pred HHHHHcCCCCccEEEEcCCcc----hHHHHHHHhCCceEE
Q 012587 102 KEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIY 137 (460)
Q Consensus 102 ~~~~~~~~~~pD~vv~D~~~~----~~~~~A~~lgiP~v~ 137 (460)
.+.+++. +||+|+...-.+ |.......++.+++.
T Consensus 93 ~~~I~~s--~~dil~VglG~PkQE~~~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 93 LAKIARS--GAGIVFVGLGCPKQEIWMRNHRHLKPDAVMI 130 (177)
T ss_pred HHHHHHc--CCCEEEEEcCCcHhHHHHHHhHHhCCCcEEE
Confidence 5555555 999999987766 455555555555443
No 454
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=36.03 E-value=1.5e+02 Score=28.81 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=28.2
Q ss_pred HHHHHHcCCCCccEEEEcCCcc---hHHHHHHHhCCceEEEecchh
Q 012587 101 LKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTISA 143 (460)
Q Consensus 101 l~~~~~~~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 143 (460)
+.+.+++. ++|+||.=.-.. .+-.+|..+++|+|.+.|...
T Consensus 76 ~~~~~~~~--~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTtag 119 (366)
T PRK09423 76 LVAIAEEN--GCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIAS 119 (366)
T ss_pred HHHHHHhc--CCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCccc
Confidence 34445554 899999654433 466667778999999887643
No 455
>PLN02735 carbamoyl-phosphate synthase
Probab=35.81 E-value=3e+02 Score=31.40 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCC--CCCH----HHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 5 DHVHVAILPLPA--VGHV----NSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 5 ~~~~il~~~~~~--~Gh~----~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
.+.||+++-.|. .|+. +.-..++++|++.|++|..+.+..
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 356999998875 3533 557889999999999999987633
No 456
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.75 E-value=1.5e+02 Score=24.90 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=49.3
Q ss_pred hHHHHHHHhCCceeccccc-ccchhhHHHHHhhhceeeeec-CCcchHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHH
Q 012587 356 NSTLESIVAGMPMICWPSF-ADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAK 430 (460)
Q Consensus 356 gs~~eal~~GvP~l~~P~~-~DQ~~na~~~~e~~G~g~~~~-~~~~~~~l~~~i~~~l~-~~~~~~~~~a~~l~~~~~ 430 (460)
-|+.|--.+|.=.+.==-. .=+..|+++. +++|.=..+- +..|.+.|..+..+=|+ ++..++++++.++.+..+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4666777776654421111 1257899999 6999887776 77788888777776655 555678888777766544
No 457
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=35.64 E-value=89 Score=24.18 Aligned_cols=37 Identities=3% Similarity=0.038 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~ 41 (460)
.|.||+++|..+.|-=.-.-.+-++...+|.++.+-.
T Consensus 2 ~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 2 EKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3569999999988876655577777788898887744
No 458
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=35.61 E-value=63 Score=29.85 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
..|.|+.=|+-|-..-.+.||.+|+++|++|.++-...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dp 39 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDP 39 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46777766899999999999999999999999996533
No 459
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=35.59 E-value=1.5e+02 Score=29.56 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCccchh
Q 012587 8 HVAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYD 47 (460)
Q Consensus 8 ~il~~~~~~~Gh~~p~l~La~~L~-~rGH~Vt~~~~~~~~~ 47 (460)
-|+++..++.|-..-...||..|. ++|.+|.+++.+.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 456666679999999999999997 5899999999865433
No 460
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=35.51 E-value=2.8e+02 Score=27.77 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
|.||+++..| .+ .+.+++++++.|++|..+.+.
T Consensus 2 ~kkili~g~g---~~--~~~~~~aa~~lG~~vv~~~~~ 34 (449)
T TIGR00514 2 LDKILIANRG---EI--ALRILRACKELGIKTVAVHST 34 (449)
T ss_pred cceEEEeCCC---HH--HHHHHHHHHHcCCeEEEEECh
Confidence 4588888433 33 678889999999999998763
No 461
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=35.44 E-value=1.4e+02 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 99 ~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
..+.+.+++. +||+++.+.. ....++++|||++.+..
T Consensus 338 ~~~~~~~~~~--~pdl~ig~~~---~~~~~~~~~ip~~~~~~ 374 (399)
T cd00316 338 EELEELIREL--KPDLIIGGSK---GRYIAKKLGIPLVRIGF 374 (399)
T ss_pred HHHHHHHhhc--CCCEEEECCc---HHHHHHHhCCCEEEcCC
Confidence 4455666665 9999999964 56778889999986543
No 462
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=35.37 E-value=59 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=27.6
Q ss_pred cEEEEEcCC-CCCCHH---HHHHHHHHHHhCCCeEEEEeCc
Q 012587 7 VHVAILPLP-AVGHVN---SMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 7 ~~il~~~~~-~~Gh~~---p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
+||++++.+ +.=|-. -...+.++|.++||+|.++...
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 499888865 323333 4578999999999999998653
No 463
>PRK10818 cell division inhibitor MinD; Provisional
Probab=35.15 E-value=62 Score=29.73 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.1
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|+||+-+.. |+-|--.-...||..|+++|++|.++-...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 446533333 799999999999999999999999998644
No 464
>PRK13054 lipid kinase; Reviewed
Probab=35.12 E-value=85 Score=29.48 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.|+|++|+-.|..+...-...+.+.|.++|+++.+..+
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t 39 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT 39 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe
Confidence 46788888888766556666778889999999887665
No 465
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=35.06 E-value=89 Score=26.84 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
|+||++--.|+.|=.+. +.|-+.|++.|+++.++.+......+..+
T Consensus 2 ~~riivgisGASG~iyg-vrlLe~L~~~~~e~hlviS~~a~~~~~~E 47 (191)
T COG0163 2 MKRIIVGISGASGAIYG-VRLLEVLRELGVETHLVISKAAKKTLKYE 47 (191)
T ss_pred CcEEEEEEeccccHHHH-HHHHHHHHhcCceEEEEEcHHHHHHHHHH
Confidence 56899999999887765 67889999999999999985544444443
No 466
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=35.04 E-value=42 Score=34.24 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhc
Q 012587 18 GHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (460)
Q Consensus 18 Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (460)
+.+.+.-.++++|+.+|++|.+++..+.++.+.+-
T Consensus 38 ~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKv 72 (515)
T TIGR00467 38 REVITADAIARALRDSGSEARFIYIADNYDPLRKV 72 (515)
T ss_pred hhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccc
Confidence 33556678999999999999999988877766654
No 467
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=34.92 E-value=55 Score=28.28 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (460)
|||.++-. ||+ -+.+|..|+++||+|+.+-. +.+++..
T Consensus 1 M~I~ViGl---Gyv--Gl~~A~~lA~~G~~V~g~D~--~~~~v~~ 38 (185)
T PF03721_consen 1 MKIAVIGL---GYV--GLPLAAALAEKGHQVIGVDI--DEEKVEA 38 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S---HHHHHH
T ss_pred CEEEEECC---Ccc--hHHHHHHHHhCCCEEEEEeC--ChHHHHH
Confidence 68888744 443 37889999999999999864 3344433
No 468
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.82 E-value=3.7e+02 Score=29.05 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=30.7
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
..|++.++. |+.|--.-.+.||..|+..|++|.++-...
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 346666655 477778888999999999999999997643
No 469
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=34.68 E-value=1.2e+02 Score=29.12 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=22.7
Q ss_pred CccEEEEcCCcchHHHHHHHhCCceEEEec
Q 012587 111 PVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 111 ~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 140 (460)
+.|++|+.- ...+.+|..+|+|+|.+..
T Consensus 262 ~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 568999763 4578899999999999764
No 470
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.67 E-value=61 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (460)
.||+++-.|..| ...++.|.+.||+|+++.+ ...+.+.
T Consensus 14 ~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp-~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP-EICKEMK 51 (157)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC-ccCHHHH
Confidence 578887666533 6788999999999999964 5555554
No 471
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=34.60 E-value=52 Score=32.61 Aligned_cols=31 Identities=35% Similarity=0.525 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|||.|+-.|..| +++|..|+++||+|+.+..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 489998777766 6889999999999998864
No 472
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=34.41 E-value=2.3e+02 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.1
Q ss_pred CccEEEEcCCcchHHHHHHHhCCceEEEe
Q 012587 111 PVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (460)
Q Consensus 111 ~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 139 (460)
+||+++.+.. ...+|+++|||++.+.
T Consensus 371 ~~dliig~s~---~~~~a~~~gip~~~~g 396 (455)
T PRK14476 371 GADLLITNSH---GRQAAERLGIPLLRVG 396 (455)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 7999999965 5778999999998753
No 473
>PRK00170 azoreductase; Reviewed
Probab=34.40 E-value=81 Score=27.41 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCC---HHHHH-HHHHHHHhC--CCeEEEEeC
Q 012587 6 HVHVAILPLPAVGH---VNSML-NLAELLGHA--GIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh---~~p~l-~La~~L~~r--GH~Vt~~~~ 42 (460)
||||+++...-+.+ -.-++ .+.+.|.++ ||+|+++--
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 57887766644433 22222 345666667 999988764
No 474
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=34.29 E-value=83 Score=26.54 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=31.9
Q ss_pred CcEE-EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHV-AILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~i-l~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
||+| .|+-+-..|-.-=+-+|.+.|++||++|..+=+..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 3455 56666688988889999999999999999998744
No 475
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=34.14 E-value=92 Score=28.25 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=31.3
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 6 ~~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|++|.++.. |+.|--.....||..|+.+|++|.++-...
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~ 41 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDP 41 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 456655554 688888889999999999999999997643
No 476
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=34.03 E-value=2.1e+02 Score=26.62 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCeEEEEeCc
Q 012587 24 LNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~~ 43 (460)
-+|...|.+.||+|++++-.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 36788999999999999953
No 477
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.01 E-value=84 Score=28.63 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=28.5
Q ss_pred CCCCCC-cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 1 MEKQDH-VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 1 ~~~~~~-~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|.+..+ -|+++++.++.|. ---.++|+.|+++|++|.+...
T Consensus 1 ~~~~~~~~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNM-SISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred CCCcccCCcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEeC
Confidence 444333 2888999887631 0335788999999999988654
No 478
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=33.99 E-value=2.5e+02 Score=25.10 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=24.3
Q ss_pred CccEEEEcCCcc---hHHHHHHHhCCceEEEec
Q 012587 111 PVNCIITDGYMS---RAIDAAREVGVSIIYFRT 140 (460)
Q Consensus 111 ~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~ 140 (460)
+.|+||-|...+ --..+++.+|+|++.-..
T Consensus 178 gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 178 GADLIVLDCMGYTQEMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHH
Confidence 999999998776 246778899999998444
No 479
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=33.81 E-value=70 Score=31.63 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=31.0
Q ss_pred cEE-EEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHV-AILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~i-l~~~~-~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
|+| .|+.. |+-|-..-.+.||..|+.+|++|.++=...
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 454 44444 799999999999999999999999996544
No 480
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.68 E-value=62 Score=29.49 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=30.9
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHH-hCCCeEEEEeCccc
Q 012587 8 HVAILPL-PAVGHVNSMLNLAELLG-HAGIKITFLNTEHY 45 (460)
Q Consensus 8 ~il~~~~-~~~Gh~~p~l~La~~L~-~rGH~Vt~~~~~~~ 45 (460)
.|.|+.. |+-|-..-.+.||.+|+ .+||+|.++=..+.
T Consensus 4 iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 4 IIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4444444 79999999999999999 66799999987554
No 481
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=33.44 E-value=50 Score=29.62 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccchhHHhhccccccccccCCCCceEEecCCCCCCCCCCCCCCh
Q 012587 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (460)
Q Consensus 7 ~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
|+|+++-.|-.| ..||+.|.++||+|+.+-. +.+.+.+.... .+..+.+-
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~--d~~~~~~~~~~---------~~~~~~v~-------------- 50 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDR--DEERVEEFLAD---------ELDTHVVI-------------- 50 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEc--CHHHHHHHhhh---------hcceEEEE--------------
Confidence 467777666544 6799999999999999864 33444331110 01111111
Q ss_pred HHHHHHHHhhCcHHHHHHHHcC-CCCccEEEEcCCcc----hHHHHH-HHhCCceEEEecchhHH
Q 012587 87 PELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMS----RAIDAA-REVGVSIIYFRTISACA 145 (460)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~-~~~pD~vv~D~~~~----~~~~~A-~~lgiP~v~~~~~~~~~ 145 (460)
....-.+.+++. -.+.|++|+.+..- ..+.+| +.+|+|.+..-......
T Consensus 51 ----------gd~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~ 105 (225)
T COG0569 51 ----------GDATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEH 105 (225)
T ss_pred ----------ecCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHH
Confidence 001113344444 25889988765542 344445 55999998876655443
No 482
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=33.31 E-value=74 Score=28.78 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 4 ~~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
+..++|+++...-.--..-+-.....|.++||+|++++-
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 445788766654444456667777888999999999983
No 483
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=33.03 E-value=80 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=31.9
Q ss_pred cEEEEEcCC---CCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLP---AVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~---~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+|.+|++.| +.|-=.-.-+||.-|++||++||..=-++
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDP 41 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDP 41 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccc
Confidence 477888876 77788888999999999999999987533
No 484
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.96 E-value=45 Score=31.16 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 5 ~~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
++.||.++-.|..|. .+|..|+.+||+|+++..
T Consensus 4 ~~~~V~ViGaG~mG~-----~iA~~~a~~G~~V~l~d~ 36 (286)
T PRK07819 4 AIQRVGVVGAGQMGA-----GIAEVCARAGVDVLVFET 36 (286)
T ss_pred CccEEEEEcccHHHH-----HHHHHHHhCCCEEEEEEC
Confidence 456999998888774 678899999999999975
No 485
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=32.88 E-value=79 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=29.4
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 8 HVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 8 ~il~~~~~-~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.|.+.+.+ .-|-..-++.|++.|+++|++|.++=+
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KP 39 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKP 39 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECc
Confidence 46666554 689999999999999999999999754
No 486
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=32.82 E-value=43 Score=29.77 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=23.7
Q ss_pred cEEEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 7 VHVAILP-LPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 7 ~~il~~~-~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
|||.|+- .|..| ..|+..|.++||+|+++..
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 5788874 55444 4788999999999998864
No 487
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=32.81 E-value=3.4e+02 Score=23.75 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=33.9
Q ss_pred cHHHHHHHHcCCCCccEEEEcCCcchHHHHHHHhCCceEEEecchhHH
Q 012587 98 PPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACA 145 (460)
Q Consensus 98 ~~~l~~~~~~~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 145 (460)
.+++++.++. +.+.+|+-.+.......|...|+|++.=..++.-.
T Consensus 70 ~e~a~~a~~a---GA~FivSP~~~~~v~~~~~~~~i~~iPG~~TptEi 114 (196)
T PF01081_consen 70 AEQAEAAIAA---GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPTEI 114 (196)
T ss_dssp HHHHHHHHHH---T-SEEEESS--HHHHHHHHHHTSEEEEEESSHHHH
T ss_pred HHHHHHHHHc---CCCEEECCCCCHHHHHHHHHcCCcccCCcCCHHHH
Confidence 4566667766 99999999888889999999999999976665443
No 488
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=32.71 E-value=57 Score=29.84 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.7
Q ss_pred cEEEEEcCC---CCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 7 VHVAILPLP---AVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 7 ~~il~~~~~---~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
+|.+|++.| +.|-=.-.-.||.-|..||++|++.=-++
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DP 41 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDP 41 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecc
Confidence 478888876 66777778899999999999999987533
No 489
>CHL00175 minD septum-site determining protein; Validated
Probab=32.62 E-value=86 Score=29.03 Aligned_cols=41 Identities=12% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCCcEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 012587 4 QDHVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (460)
Q Consensus 4 ~~~~~il~~~~--~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (460)
.+|+||+.+.. |+-|--.-...||.+|+++|++|.++-.+.
T Consensus 12 ~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34567766665 688888999999999999999999986533
No 490
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=32.59 E-value=75 Score=31.21 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=29.8
Q ss_pred CcHHHHHHHHcCCCCccEEEEcCCcch----------HHHHHHHhCCceEEEe
Q 012587 97 TPPLLKEMVSDSKSPVNCIITDGYMSR----------AIDAAREVGVSIIYFR 139 (460)
Q Consensus 97 ~~~~l~~~~~~~~~~pD~vv~D~~~~~----------~~~~A~~lgiP~v~~~ 139 (460)
....+.+++++. +||++|+...+-. +..+.+++|||.++-.
T Consensus 64 a~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 64 AKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 345567777776 9999999987652 2335668999998865
No 491
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.59 E-value=76 Score=31.20 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=29.4
Q ss_pred cHHHHHHHHcCCCCccEEEEcCCcch----------HHHHHHHhCCceEEEe
Q 012587 98 PPLLKEMVSDSKSPVNCIITDGYMSR----------AIDAAREVGVSIIYFR 139 (460)
Q Consensus 98 ~~~l~~~~~~~~~~pD~vv~D~~~~~----------~~~~A~~lgiP~v~~~ 139 (460)
...+.+++++. +||++|+...+-. +..+.+++|||.++-.
T Consensus 65 ~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 65 VARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 35566777776 9999999987652 2335668999998865
No 492
>PRK11914 diacylglycerol kinase; Reviewed
Probab=32.49 E-value=1.8e+02 Score=27.31 Aligned_cols=83 Identities=7% Similarity=-0.022 Sum_probs=0.0
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccc
Q 012587 266 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSA 345 (460)
Q Consensus 266 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~ 345 (460)
.+-.++++.-|........+..+.+.+++.+..+.+... .-+....+. -........+
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t-----------~~~~~~~~~-----------a~~~~~~~~d 66 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVG-----------TDAHDARHL-----------VAAALAKGTD 66 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe-----------CCHHHHHHH-----------HHHHHhcCCC
Q ss_pred cccccccCChhHHHHHH----HhCCceeccc
Q 012587 346 VGGFLTHCGWNSTLESI----VAGMPMICWP 372 (460)
Q Consensus 346 ~~~~I~HGG~gs~~eal----~~GvP~l~~P 372 (460)
+ +|.-||=||+.|++ ..++|+-++|
T Consensus 67 ~--vvv~GGDGTi~evv~~l~~~~~~lgiiP 95 (306)
T PRK11914 67 A--LVVVGGDGVISNALQVLAGTDIPLGIIP 95 (306)
T ss_pred E--EEEECCchHHHHHhHHhccCCCcEEEEe
No 493
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=32.41 E-value=93 Score=25.32 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=29.3
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 10 AILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 10 l~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.++..|..--++|.+-++...+..|++|+++.+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 455667888999999999999999999999988
No 494
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=32.30 E-value=75 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=21.3
Q ss_pred chhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhH
Q 012587 377 QQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 413 (460)
Q Consensus 377 Q~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~ 413 (460)
..+.+..- +..|||+.+ |++++.++|.+.++.
T Consensus 101 ~~d~~~Fe-~~cGVGV~V----T~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 101 PIDVAEFE-KACGVGVVV----TPEQIEAAVEKYIEE 132 (164)
T ss_dssp G--HHHHH-HTTTTT--------HHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHcCCCeEE----CHHHHHHHHHHHHHH
Confidence 45555555 578999999 999999999999984
No 495
>PLN02285 methionyl-tRNA formyltransferase
Probab=32.26 E-value=4.6e+02 Score=25.13 Aligned_cols=40 Identities=8% Similarity=-0.017 Sum_probs=23.2
Q ss_pred HHHHHHHcCCCCccEEEEcCCcc-hHHHHHHHhCCceEEEecc
Q 012587 100 LLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTI 141 (460)
Q Consensus 100 ~l~~~~~~~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 141 (460)
.+.+.++++ +||++|+-.+.. ....+-+.....++-++++
T Consensus 84 ~~~~~l~~~--~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpS 124 (334)
T PLN02285 84 DFLSALREL--QPDLCITAAYGNILPQKFLDIPKLGTVNIHPS 124 (334)
T ss_pred HHHHHHHhh--CCCEEEhhHhhhhcCHHHHhhccCCEEEEecc
Confidence 344556676 999999775533 2333334444456666655
No 496
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.99 E-value=3.5e+02 Score=26.63 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=30.8
Q ss_pred EE-EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 012587 8 HV-AILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (460)
Q Consensus 8 ~i-l~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (460)
+| +|+-..+.|-..-...||..+..+|++|.+++.+.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 44 444445888888999999999999999999998554
No 497
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=31.78 E-value=4.2e+02 Score=24.77 Aligned_cols=115 Identities=7% Similarity=0.028 Sum_probs=71.5
Q ss_pred HHHHHHhhCCCcEEEEEccCCCCCCCCCCCCchHHHHHhcCCceeeeecChHhhhcccccccccccCChhHHHHHHHhCC
Q 012587 287 EFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGM 366 (460)
Q Consensus 287 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~vp~~~il~~~~~~~~I~HGG~gs~~eal~~Gv 366 (460)
.+.+.++..+.++++..+ .-..+++.+.+..+..+ |=-|+++ .=...|.+.+..|+.+|+
T Consensus 156 ~~~~~l~~~~~Dlivlag--------y~~il~~~~l~~~~~~i----------iNiHpSL--LP~yrG~~~~~~ai~~G~ 215 (286)
T PRK06027 156 RLLELIDEYQPDLVVLAR--------YMQILSPDFVARFPGRI----------INIHHSF--LPAFKGAKPYHQAYERGV 215 (286)
T ss_pred HHHHHHHHhCCCEEEEec--------chhhcCHHHHhhccCCc----------eecCccc--CCCCCCCCHHHHHHHCCC
Confidence 456667777777777763 33355665544332211 1223333 333458899999999999
Q ss_pred ceeccccc--ccchhhHHHHHhhhceeeeecCCcchHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 012587 367 PMICWPSF--ADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMAN 427 (460)
Q Consensus 367 P~l~~P~~--~DQ~~na~~~~e~~G~g~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~a~~l~~ 427 (460)
..-.+-.+ .+..+.+..+. .-.+.+...-|.++|.+.+..+-. .-|-+..+.+.+
T Consensus 216 ~~tG~TiH~v~~~~D~G~Ii~---Q~~v~i~~~dt~~~L~~ri~~~E~---~~~~~ai~~~~~ 272 (286)
T PRK06027 216 KLIGATAHYVTADLDEGPIIE---QDVIRVDHRDTAEDLVRAGRDVEK---QVLARAVRWHLE 272 (286)
T ss_pred CeEEEEEEEEcCCCcCCCcEE---EEEEEcCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 98777654 35667776663 344455456788889888877644 567776666554
No 498
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=31.68 E-value=79 Score=25.02 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 012587 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 6 ~~~il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
..+|+++++|+. +...+..++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 357888988876 56789999999999999888764
No 499
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=31.68 E-value=2.9e+02 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCc
Q 012587 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (460)
Q Consensus 9 il~~~~~~~Gh~~p~l~La~~L~~rGH~Vt~~~~~ 43 (460)
|++.-.++-|--..+..++..|.++|++|.++...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 66777788899999999999999999999998864
No 500
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=31.63 E-value=57 Score=25.14 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 012587 21 NSMLNLAELLGHAGIKITFLNT 42 (460)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~ 42 (460)
.|.+.|+++|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7999999999999999998865
Done!