BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012588
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S24|A Chain A, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|B Chain B, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|C Chain C, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|D Chain D, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|E Chain E, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|G Chain G, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|F Chain F, Crystal Structure Of Human Mrna Guanylyltransferase
Length = 347
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 176/343 (51%), Gaps = 48/343 (13%)
Query: 112 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG--- 168
C+Q F G FPG+ PVS++ N++LL + Y +WKADGTRYMML IDG
Sbjct: 29 CHQ-----FCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMML--IDGTNE 81
Query: 169 CYLIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLI 225
++IDR + F + FP R + H TLLDGEMIID++ + + RYLI
Sbjct: 82 VFMIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDRV--NGQAVPRYLI 133
Query: 226 YDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 285
YD++ N V + F R + +E+E+I PR+ + + EPF VR K F
Sbjct: 134 YDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQ------EPFSVRNKPF 187
Query: 286 WLLSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 344
+ + T KLL+ F ++SH+ DGL+FQ Y P + +LKWK +NSVDF ++T
Sbjct: 188 FDICTSRKLLEGNFAKEVSHEMDGLIFQP-TGKYKPGRCDDILKWKPPSLNSVDFRLKIT 246
Query: 345 --------DDDRQLLYV--FERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK 394
+ LLYV +ER ++ +E Y KIIEC ++ + W
Sbjct: 247 RMGGEGLLPQNVGLLYVGGYERPFAQIK-------VTKELKQYDNKIIECKFENNS--WV 297
Query: 395 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRL 437
MR RTDKS PN NT V SI + +T+E+L I L
Sbjct: 298 FMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAL 340
>pdb|3RTX|A Chain A, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
pdb|3RTX|B Chain B, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
Length = 343
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 175/337 (51%), Gaps = 48/337 (14%)
Query: 112 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG--- 168
C+Q F G FPG+ PVS++ N++LL Q+ Y +WKADGTRYMML IDG
Sbjct: 33 CHQ-----FCGWEGSGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMML--IDGTNE 85
Query: 169 CYLIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLI 225
++IDR + F + FP R + H TLLDGEMIIDK+ + + RYLI
Sbjct: 86 VFMIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDKV--NGQAVPRYLI 137
Query: 226 YDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 285
YD++ N V + F R + +E+E+I PR+ + + EPF VR K F
Sbjct: 138 YDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQ------EPFSVRPKQF 191
Query: 286 WLLSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 344
+ ++ KLL+ F ++SH+ DGL+FQ Y P + +LKWK +NSVDF ++T
Sbjct: 192 FDINISRKLLEGNFAKEVSHEMDGLIFQPIGK-YKPGRCDDILKWKPPSLNSVDFRLKIT 250
Query: 345 --------DDDRQLLYV--FERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK 394
+ LLYV +ER ++ +E Y KIIEC ++ + W
Sbjct: 251 RMGGEGLLPQNVGLLYVGGYERPFAQIK-------VTKELKQYDNKIIECKFENNS--WV 301
Query: 395 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEI 431
MR R DKS PN NT V SI + +T+E+L I
Sbjct: 302 FMRQRIDKSFPNAYNTAMAVCNSISNPVTKEMLFEFI 338
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|D Chain D, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 461
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 167/370 (45%), Gaps = 73/370 (19%)
Query: 128 FPGSHPVSL-NSDNLQLLRQRYYYATWKADGTRYMMLITID------GCYLIDRCFNFRR 180
FPGS PVS +SD + L YY K DG R +M I I+ GC++IDR N+
Sbjct: 45 FPGSQPVSFQHSDVEEKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYL 104
Query: 181 VQ-MRFP--CRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVI 237
V RFP + E L E TLLDGE++I P ++ QE RYL++D +AIN +
Sbjct: 105 VNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQTNPMTKLQELRYLMFDCLAINGRCLT 164
Query: 238 ERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKE 297
+ P R L KE +P ++ Y +R + PF++ K + K+ K
Sbjct: 165 QSPTSSRLAHLGKEFFKPY-FDLRAAYPNRCTTF-----PFKISMKHMDFSYQLVKVAKS 218
Query: 298 FIPKLSHDADGLVFQGWDDPYVPRTHEG-LLKWKYARMNSVDFLF----------EVTDD 346
+ KL H +DGL+F PY + LLKWK + N+VDF + D
Sbjct: 219 -LDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQENTVDFKLILDIPMVEDPSLPKD 277
Query: 347 DRQ------------LLYV-----------------FERGKKKLMEGSSVEFTDREPS-- 375
DR LYV F+R + +++E + +F + S
Sbjct: 278 DRNRWYYNYDVKPVFSLYVWQGGADVNSRLKHFDQPFDRKEFEILERTYRKFAELSVSDE 337
Query: 376 ----------FYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEE 425
+G+I+EC + + W+ +R R DK N + +KV+ SI D+++
Sbjct: 338 EWQNLKNLEQPLNGRIVECAKNQETGAWEMLRFRDDKLNGNHTSVVQKVLESINDSVS-- 395
Query: 426 VLLNEIQEII 435
L +++EI+
Sbjct: 396 --LEDLEEIV 403
>pdb|1P16|A Chain A, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
pdb|1P16|B Chain B, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
Length = 395
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 45/353 (12%)
Query: 122 GRGNMQFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITID-----GCYLIDRC 175
GR N FPGS PVS +L+ L Q+ Y+ K DG R ++ + D G +L+ R
Sbjct: 34 GRRNTGFPGSQPVSFERRHLEETLXQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRE 93
Query: 176 FNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQA 234
++ + + FP + HH TLLDGE++++ + RY+I+D +AI+
Sbjct: 94 NDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENR-NVSEPVLRYVIFDALAIHGK 152
Query: 235 SVIERPFYERWKMLEKEVIEP-RNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNK 293
+I+RP +R + + V +P N+++HN +P + PF+V K +
Sbjct: 153 CIIDRPLPKRLGYITENVXKPFDNFKKHNPDIVNSPEF-----PFKVGFKTXLTSYHADD 207
Query: 294 LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYV 353
+L + KL H +DGL++ + PYV T + LLKWK A N+VDF E ++ Q +
Sbjct: 208 VLSK-XDKLFHASDGLIYTCAETPYVFGTDQTLLKWKPAEENTVDFQLEFVFNEVQDPDL 266
Query: 354 FERG---------------KKKLMEGSSV--EFTDREPS------------FYSGKIIEC 384
ER K ++ +GS+V +F + S G+I EC
Sbjct: 267 DERDPTSTYLDYDAKPNLIKLRVWQGSNVHTDFAKLDLSDDDWERLKALEQPLQGRIAEC 326
Query: 385 TWDPDVQ-LWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIR 436
+ W+ +R R DKS N I+ K++ SI+D + E+ ++ +I R
Sbjct: 327 RQSTTKKGYWEXLRFRNDKSNGNHISVVEKILVSIKDGVKEKEVIEWCPKISR 379
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 140/309 (45%), Gaps = 44/309 (14%)
Query: 127 QFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQ 182
+ PG +PVS+ + + L+Q Y + K DG R+MM T C +IDR +
Sbjct: 55 RLPGPNPVSIERKDFEKLKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLP 114
Query: 183 MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFY 242
+ R +G ++ DGE+ +D + ++ ++++D + ++ +V +
Sbjct: 115 FKNIPRVLFQG--------SIFDGELCVDIV----EKKFAFVLFDAVVVSGVTVSQMDLA 162
Query: 243 ERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL 302
R+ +++ + E +N +P +R K+ W+ ++K+ + K
Sbjct: 163 SRFFAMKRSLKEFKNVPE---------------DPAILRYKE-WIPLEHPTIIKDHLKKA 206
Query: 303 S--HDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKK 360
+ + DGL+ D+P + + L K K +++DF+ D + +F+ +K
Sbjct: 207 NAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSEDGT---IGIFDPNLRK 263
Query: 361 LMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRD 420
+V + + G I+EC + WK ++ R+DK+ ND TY K + +I +
Sbjct: 264 -----NVPVGKLDGYYNKGSIVECGFADGT--WKYIQGRSDKNQANDRLTYEKTLLNIEE 316
Query: 421 NITEEVLLN 429
NIT + LL+
Sbjct: 317 NITIDELLD 325
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 139/309 (44%), Gaps = 44/309 (14%)
Query: 127 QFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQ 182
+ PG +PVS+ + + L+Q Y + DG R+MM T C +IDR +
Sbjct: 55 RLPGPNPVSIERKDFEKLKQNKYVVSEXTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLP 114
Query: 183 MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFY 242
+ R +G ++ DGE+ +D + ++ ++++D + ++ +V +
Sbjct: 115 FKNIPRVLFQG--------SIFDGELCVDIV----EKKFAFVLFDAVVVSGVTVSQMDLA 162
Query: 243 ERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL 302
R+ +++ + E +N +P +R K+ W+ ++K+ + K
Sbjct: 163 SRFFAMKRSLKEFKNVPE---------------DPAILRYKE-WIPLEHPTIIKDHLKKA 206
Query: 303 S--HDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKK 360
+ + DGL+ D+P + + L K K +++DF+ D + +F+ +K
Sbjct: 207 NAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSEDGT---IGIFDPNLRK 263
Query: 361 LMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRD 420
+V + + G I+EC + WK ++ R+DK+ ND TY K + +I +
Sbjct: 264 -----NVPVGKLDGYYNKGSIVECGFADGT--WKYIQGRSDKNQANDRLTYEKTLLNIEE 316
Query: 421 NITEEVLLN 429
NIT + LL+
Sbjct: 317 NITIDELLD 325
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEW 58
+I FL+ S+ A+ FA+ RPPGIYK +Y++ L+ Y + ++ P P P+W
Sbjct: 136 LICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE-EAPPPPVLPDW 192
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEW 58
+I FL+ S+ A+ FA+ RPPGIYK +Y++ L+ Y + ++ P P P+W
Sbjct: 136 LICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE-EAPPPPVLPDW 192
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 44
+I FL+ S+ A+ FA+ RPPGIYK +Y++ L+ Y +
Sbjct: 158 LICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGD 201
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 317 PYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQ 349
P+V L W YAR F+F + D D Q
Sbjct: 34 PHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQ 66
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 317 PYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQ 349
P+V L W YAR F+F + D D Q
Sbjct: 34 PHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQ 66
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 317 PYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQ 349
P+V L W YAR F+F + D D Q
Sbjct: 19 PHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQ 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,208,919
Number of Sequences: 62578
Number of extensions: 601482
Number of successful extensions: 1236
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 16
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)