Query 012588
Match_columns 460
No_of_seqs 281 out of 889
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rtx_A MRNA-capping enzyme; gu 100.0 9.2E-79 3.1E-83 617.4 20.5 323 88-435 7-342 (343)
2 3kyh_C MRNA-capping enzyme sub 100.0 2.3E-76 7.8E-81 615.6 26.6 340 94-453 14-415 (461)
3 1p16_A GTP--RNA, mRNA capping 100.0 2.6E-67 8.9E-72 544.8 28.2 327 94-434 11-377 (395)
4 1ckm_A MRNA capping enzyme; nu 100.0 2.7E-60 9.1E-65 481.2 23.1 301 88-432 19-328 (330)
5 1vs0_A Putative DNA ligase-lik 99.9 1.2E-27 4E-32 240.3 15.1 164 144-341 22-197 (310)
6 2cfm_A Thermostable DNA ligase 99.9 7.9E-27 2.7E-31 251.3 15.3 187 126-342 214-433 (561)
7 2hiv_A Thermostable DNA ligase 99.9 1.4E-25 4.9E-30 244.0 16.7 165 148-341 274-470 (621)
8 1x9n_A DNA ligase I; 5'-adenyl 99.9 1.2E-24 4.1E-29 238.8 18.2 172 144-341 327-530 (688)
9 3gde_A DNA ligase; DNA-binding 99.9 1.5E-24 5.3E-29 233.0 13.4 165 147-342 245-433 (558)
10 1fvi_A Chlorella virus DNA lig 99.9 7.2E-24 2.5E-28 211.5 13.7 217 146-403 18-296 (297)
11 3l2p_A DNA ligase 3; DNA ligas 99.9 1.8E-21 6.1E-26 209.9 24.5 166 147-342 247-441 (579)
12 1a0i_A DNA ligase; DNA replica 99.9 4.5E-22 1.6E-26 202.6 13.3 184 132-342 9-249 (348)
13 3vnn_A DNA ligase 4; non-homol 99.7 1.4E-17 4.6E-22 148.4 11.9 102 149-253 1-127 (139)
14 3qwu_A DNA ligase; structural 98.8 1.3E-08 4.4E-13 103.2 11.8 123 126-252 52-181 (370)
15 2vug_A PAB1020; RNA, ligase, A 98.8 8.5E-08 2.9E-12 98.7 14.5 172 125-331 72-251 (389)
16 1xk5_A Snurportin-1; protein-R 98.7 4E-07 1.4E-11 85.2 16.0 162 147-332 21-184 (204)
17 2c46_A MRNA capping enzyme; ph 98.7 1.6E-08 5.3E-13 97.7 5.8 62 1-63 158-219 (241)
18 3gjx_B Snurportin-1; transport 98.5 1.6E-06 5.4E-11 86.8 15.8 161 147-331 122-284 (365)
19 1s68_A RNA ligase 2; ribonucle 96.4 0.019 6.4E-07 55.3 10.7 108 144-251 25-145 (249)
20 2hvq_A ORF1, hypothetical 37.6 96.3 0.026 8.8E-07 56.7 11.7 110 143-252 25-147 (335)
21 1ta8_A DNA ligase, NAD-depende 96.1 0.059 2E-06 53.9 12.9 159 148-333 114-318 (332)
22 1b04_A Protein (DNA ligase); D 95.9 0.078 2.7E-06 52.8 12.7 159 148-333 108-312 (318)
23 4glw_A DNA ligase; inhibitor, 94.9 0.71 2.4E-05 45.6 15.7 157 147-332 102-304 (305)
24 4glx_A DNA ligase; inhibitor, 94.6 1.3 4.5E-05 47.5 18.1 169 147-343 108-327 (586)
25 2oud_A Dual specificity protei 94.0 0.033 1.1E-06 50.2 3.6 57 2-60 105-163 (177)
26 1ohe_A CDC14B, CDC14B2 phospha 93.3 0.056 1.9E-06 54.4 4.2 42 1-42 286-329 (348)
27 3jsl_A DNA ligase; NAD+-depend 93.1 2 6.7E-05 42.6 14.9 159 148-333 106-310 (318)
28 2hcm_A Dual specificity protei 93.1 0.081 2.8E-06 46.7 4.5 37 2-38 107-143 (164)
29 3uq8_A DNA ligase; adenylated 92.5 1.9 6.3E-05 42.9 13.8 158 148-333 108-316 (322)
30 1zau_A DNA ligase; AMP; HET: D 91.0 0.15 5.3E-06 50.8 4.2 147 147-318 116-306 (328)
31 1zzw_A Dual specificity protei 90.9 0.2 6.8E-06 43.3 4.4 41 2-42 101-141 (149)
32 2hxp_A Dual specificity protei 90.1 0.24 8.3E-06 43.3 4.2 43 1-43 102-144 (155)
33 2g6z_A Dual specificity protei 89.1 0.3 1E-05 45.6 4.2 41 1-41 100-140 (211)
34 2owo_A DNA ligase; protein-DNA 88.3 9.8 0.00033 41.4 16.0 166 148-343 109-327 (671)
35 2esb_A Dual specificity protei 87.4 0.49 1.7E-05 42.9 4.4 37 2-38 115-151 (188)
36 2wgp_A Dual specificity protei 87.3 0.47 1.6E-05 43.1 4.2 37 2-38 121-157 (190)
37 2y96_A Dual specificity phosph 85.5 0.61 2.1E-05 43.5 4.0 38 1-39 156-193 (219)
38 1wrm_A Dual specificity phosph 85.5 0.69 2.4E-05 40.7 4.2 40 2-41 101-140 (165)
39 1yz4_A DUSP15, dual specificit 85.4 0.71 2.4E-05 40.3 4.3 38 2-39 102-139 (160)
40 1xdn_A RNA editing ligase MP52 84.4 7.1 0.00024 37.8 11.0 106 144-250 30-189 (277)
41 3emu_A Leucine rich repeat and 84.2 0.88 3E-05 40.1 4.3 39 1-39 104-142 (161)
42 2i6j_A Ssoptp, sulfolobus solf 82.9 1 3.6E-05 38.8 4.2 43 1-43 106-148 (161)
43 1dgs_A DNA ligase; AMP complex 82.7 22 0.00077 38.6 15.3 168 148-343 110-325 (667)
44 3sgi_A DNA ligase; HET: DNA AM 81.8 20 0.00069 38.6 14.4 165 148-338 117-332 (615)
45 3n0a_A Tyrosine-protein phosph 75.9 2.5 8.5E-05 42.6 4.8 32 1-32 132-164 (361)
46 3nme_A Ptpkis1 protein, SEX4 g 74.4 2.5 8.6E-05 41.1 4.3 43 1-43 123-165 (294)
47 1d5r_A Phosphoinositide phosph 74.0 2 6.9E-05 42.4 3.6 34 1-34 128-165 (324)
48 3v0d_A Voltage-sensor containi 67.8 1.9 6.6E-05 43.1 1.8 26 1-26 136-162 (339)
49 1fpz_A Cyclin-dependent kinase 61.1 4.2 0.00014 37.1 2.7 42 1-42 150-193 (212)
50 1ohe_A CDC14B, CDC14B2 phospha 44.4 9 0.00031 38.2 2.1 25 1-25 97-121 (348)
51 2dam_A ETEA protein; KIAA0887, 22.5 46 0.0016 24.9 2.3 22 3-24 37-58 (67)
52 1v92_A NSFL1 cofactor P47; 3-h 22.2 40 0.0014 22.8 1.8 21 3-23 23-43 (46)
53 3e21_A HFAF1, FAS-associated f 20.3 29 0.001 24.1 0.7 19 3-21 24-42 (45)
No 1
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=100.00 E-value=9.2e-79 Score=617.45 Aligned_cols=323 Identities=38% Similarity=0.605 Sum_probs=223.0
Q ss_pred ccccCCCCCCCccccch--HHHHHHHHHHHhcccCCCCCCCCCCCCcccccccccccccccCceEEEEcCCeeEEEEEEE
Q 012588 88 VTMTNDDVLGDEIPNDQ--QDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT 165 (460)
Q Consensus 88 ~~~~~~~v~G~~~~~~~--~~~~r~~~~~l~~~~~~~~~~~~FPGsqPVSl~r~nl~~l~~~~Y~V~~K~DG~R~Ll~i~ 165 (460)
+||.+.+|.|+++++++ +.+||++|++||+|+. .+|||||||||+|+||+.|.+++|+|||||||+|+||++.
T Consensus 7 ~f~~~~~v~gv~~v~~~~~~~~l~~~v~~~~~~~~-----~~FPGsqPVS~~r~nl~~L~~~~y~v~~K~DG~R~ll~i~ 81 (343)
T 3rtx_A 7 IFLEGITVKGVTQVTTQPKLGEVQQKCHQFCGWEG-----SGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMMLID 81 (343)
T ss_dssp CSSSSSCCTTEEECCCTTHHHHHHHHHHHHTTCCS-----SSCCSEEEEECCTTGGGHHHHSCEEEEEECCCEEEEEEEC
T ss_pred eecCCcccCCeEEeCChHHHHHHHHHHHHHhCCCC-----CCCCCceeeccchhhHHhhccCCEEEEECCCceEEEEEEE
Confidence 68999999999999884 7899999999998864 8899999999999999999999999999999999999999
Q ss_pred -CCEEEEEeCCCccccc-cCcCCcccCCCCccccCCCceeeeeEEEEecCCCCCcceeEEEEeeeeecCCccccCCCHHH
Q 012588 166 -IDGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYE 243 (460)
Q Consensus 166 -~~~vyLidR~~~~~~v-~~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~~~~~~~~ryliFDiL~~~G~~l~~~pf~e 243 (460)
+++|||+||+++.+.+ +.+||+..+.. ..+.+||||||||+++..+. ..++|+|||+|+++|++++++||.+
T Consensus 82 ~~~~v~L~sR~~~~~~~~~~~FP~~~~~~----~~~~~tvLDGElV~~~~~g~--~~~~~~~FDlL~~~G~dl~~~pl~e 155 (343)
T 3rtx_A 82 GTNEVFMIDRDNSVFHVSNLEFPFRKDLR----MHLSNTLLDGEMIIDKVNGQ--AVPRYLIYDIIKFNAQPVGDCDFNI 155 (343)
T ss_dssp STTCEEEECTTCCEEEETTCCCEETTEEE----EECCSEEEEEEEEEEESSSS--EEEEEEEEEEEEBTTBCGGGSCHHH
T ss_pred cCCEEEEEeCCCCeEEeccccCCcchhhh----ccCCCeEEEEEEEEecCCCc--EeeEEEEEEEEeECCcCcccCCHHH
Confidence 7899999999986544 58999875421 23578999999999864432 4689999999999999999999999
Q ss_pred HHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHH-HHhccccCCCCceEEEEcCCCCCccCC
Q 012588 244 RWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLL-KEFIPKLSHDADGLVFQGWDDPYVPRT 322 (460)
Q Consensus 244 Rl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll-~~~~~~l~h~~DGLIF~p~~spY~~G~ 322 (460)
|+++|++.|++|+..++ +++.+..+.+||.|+.|+||++++++++| .++++++.|++|||||||.+ ||.+||
T Consensus 156 R~~~L~~~i~~p~~~~~------~~~~~~~~~~pf~vr~K~~~~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G~ 228 (343)
T 3rtx_A 156 RLQCIEREIISPRHEKM------KTGLIDKTQEPFSVRPKQFFDINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPGR 228 (343)
T ss_dssp HHHHHHHHTHHHHHHHH------HHSSCCTTTSSSEEEECCCEEGGGHHHHSCC----------CEEEEEESS-CCCCEE
T ss_pred HHHHHHHHhhhHHHHHh------hcccccccCCCcEEEEEEeEehhhHHHHHhhhhHhhcCCCCCeEEEEECc-cCcCCC
Confidence 99999999999987554 23334567899999999999999999999 46889999999999999999 999999
Q ss_pred CCCeEEEccCCCceEEEEEEEecCC-c-------eeEEEEeCCceeeecCceeEecCCCCCCCCceEEEEEEeCCCCeeE
Q 012588 323 HEGLLKWKYARMNSVDFLFEVTDDD-R-------QLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK 394 (460)
Q Consensus 323 ~~~~LKWKP~~~nTVDF~l~~~~~~-~-------~~L~v~~~g~~~~~~~~~~~f~~~~~~~~dg~IvEC~~d~~~~~W~ 394 (460)
|.+||||||+++|||||+|++.... . +.||+ +|...+|+. +..+ ++++++||+||||+|| +|+|+
T Consensus 229 ~~~~lKwKp~~~~tvDF~l~~~~~~~~g~~~~~~~~l~~--~g~~~~f~~--~~~t-~~l~~ld~~IvEC~~~--~~~W~ 301 (343)
T 3rtx_A 229 CDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYV--GGYERPFAQ--IKVT-KELKQYDNKIIECKFE--NNSWV 301 (343)
T ss_dssp EEEEEEECCSTTCC------------------------------------------------------------------
T ss_pred CcceEEEecCcceEEEEEEEecccCCCCccccccceEEE--CCeeeecce--eecc-ccchhcCCEEEEEEEE--CCEEE
Confidence 9999999999999999999887432 1 23444 344444442 2222 4567899999999998 68999
Q ss_pred EEEEecCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHhh
Q 012588 395 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEII 435 (460)
Q Consensus 395 f~R~R~DK~~pN~~~tv~~v~~SI~~~Vt~e~Ll~~i~~~~ 435 (460)
|||+|+||++||+++||.+||+||.++||+|+|+++|++..
T Consensus 302 ~~R~R~DK~~pN~~~tv~~v~~SI~d~Vt~e~L~~~i~~~~ 342 (343)
T 3rtx_A 302 FMRQRIDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCA 342 (343)
T ss_dssp ------------CHHHHHHHHHHHHSCCCHHHHHHHHHHHC
T ss_pred EEEEcCCCCCCchHHHHHHHHHHHHccCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998753
No 2
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-76 Score=615.63 Aligned_cols=340 Identities=31% Similarity=0.489 Sum_probs=281.6
Q ss_pred CCCCCccccchHHHHHHHHHHHhcccCCCCCCCCCCCCcccccccccc-cccccCceEEEEcCCeeEEEEEEEC------
Q 012588 94 DVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNL-QLLRQRYYYATWKADGTRYMMLITI------ 166 (460)
Q Consensus 94 ~v~G~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~FPGsqPVSl~r~nl-~~l~~~~Y~V~~K~DG~R~Ll~i~~------ 166 (460)
.++|+.++++.+.+||++|++||+|+. .+.+|||||||||+|+|| +.|..++|+|||||||+||||++..
T Consensus 14 ~~pG~~~~~~~~~~lr~~v~~l~~~~~---~~~~FPGsqPVS~~r~nl~~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~ 90 (461)
T 3kyh_C 14 EIPGLIQPGNVTQDLKMMVCKLLNSPK---PTKTFPGSQPVSFQHSDVEEKLLAHDYYVCEKTDGLRVLMFIVINPVTGE 90 (461)
T ss_dssp CCSSCBCCSHHHHHHHHHHHHHTTSCG---GGSSCSSCEEEECCHHHHHHTTSSSCEEEEEEECSEEEEEEEEECTTTCC
T ss_pred CCCCcccCHHHHHHHHHHHHHHHCCCC---CCCcCCCCcceeecHhhHHHHhccCCEEEEEcccceEEEEEEeccccCCC
Confidence 478999999999999999999998853 235999999999999999 6799999999999999999999982
Q ss_pred CEEEEEeCCCcccccc-CcCCcccCC--CCccccCCCceeeeeEEEEecCCCCCcceeEEEEeeeeecCCccccCCCHHH
Q 012588 167 DGCYLIDRCFNFRRVQ-MRFPCRNSN--EGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYE 243 (460)
Q Consensus 167 ~~vyLidR~~~~~~v~-~~FP~~~~~--~~l~~~~~~~TlLDGElV~d~~~~~~~~~~ryliFDiL~~~G~~l~~~pf~e 243 (460)
++|||+||+++++.++ ++||...+. +++....+.+||||||||+++.+.++...++|+|||||+++|++++++||.+
T Consensus 91 g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~~~~~TlLDGElV~d~~~~~~~~~~~y~~FDlL~~~G~dl~~~pl~e 170 (461)
T 3kyh_C 91 QGCFMIDRENNYYLVNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQTNPMTKLQELRYLMFDCLAINGRCLTQSPTSS 170 (461)
T ss_dssp EEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTCCCCSEEEEEEEEEEECTTTCCEEEEEEEEEEEEETTEECSSSBHHH
T ss_pred ceEEEEeCCCCeEEcccccCCcccccchhhhhhccCCCeEEEEEEEeccCCCCCccceEEEEEEEEeECCcCcccCCHHH
Confidence 5799999999977665 899987542 1222235789999999999875533335799999999999999999999999
Q ss_pred HHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHHHHhccccCCCCceEEEEcCCCCCcc-CC
Q 012588 244 RWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVP-RT 322 (460)
Q Consensus 244 Rl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~-G~ 322 (460)
|+++|++.|+.|+...++ .+| +....+||.|+.|+|+.++.++++|+ +++++.|++|||||||.++||.+ ||
T Consensus 171 R~~~Le~~I~~P~~~~~~-----~~p-~~~~~~pF~V~~K~~~~~~~~~~l~~-~~~~l~~~~EGLv~k~~~spY~~Ggr 243 (461)
T 3kyh_C 171 RLAHLGKEFFKPYFDLRA-----AYP-NRCTTFPFKISMKHMDFSYQLVKVAK-SLDKLPHLSDGLIFTPVKAPYTAGGK 243 (461)
T ss_dssp HHHHHHHTTHHHHHHHHH-----HCS-TTCSCCCSEEEECCCEEGGGHHHHHH-HHTTCSSCEEEEEEEESSSBCCSSSE
T ss_pred HHHHHHHHhcccchhhhh-----ccc-cccccCCcEEEeccchhhhhHHHHHH-hhhhccCCCCeEEEEeCCCCCcCCCc
Confidence 999999999888754441 233 34567899999999999999999998 67899999999999999999999 69
Q ss_pred CCCeEEEccCCCceEEEEEEEecC----------------------CceeEEEEeCCce---------eee--------c
Q 012588 323 HEGLLKWKYARMNSVDFLFEVTDD----------------------DRQLLYVFERGKK---------KLM--------E 363 (460)
Q Consensus 323 ~~~~LKWKP~~~nTVDF~l~~~~~----------------------~~~~L~v~~~g~~---------~~~--------~ 363 (460)
+..||||||+++|||||+|++... ..+.|||+.+|.+ .+| .
T Consensus 244 ~~~~lKwKp~~~nTVDF~L~i~~~~~~~~~~~~~~~~~~y~dy~~~p~~~L~v~~gg~~~~~~~~~~~~~f~~~~~~~l~ 323 (461)
T 3kyh_C 244 DSLLLKWKPEQENTVDFKLILDIPMVEDPSLPKDDRNRWYYNYDVKPVFSLYVWQGGADVNSRLKHFDQPFDRKEFEILE 323 (461)
T ss_dssp EEEEEECCCTTTCCCEEEEECCCC------------------CCSCCCCEEEEECTTCHHHHHHHHTTCSCTTTTHHHHT
T ss_pred CCCeEEEEcCCCeeEEEEEEecccccCCCcccccccccccccccccceeEEEEEeCCcccccccccccccccchhhhccc
Confidence 999999999999999999988620 0247899877621 111 1
Q ss_pred Cc-----eeEecCC-------CCCCCCceEEEEEEeCCCCeeEEEEEecCCCCCChHHHHHHHHHhcccCCCHHHHHHHH
Q 012588 364 GS-----SVEFTDR-------EPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEI 431 (460)
Q Consensus 364 ~~-----~~~f~~~-------~~~~~dg~IvEC~~d~~~~~W~f~R~R~DK~~pN~~~tv~~v~~SI~~~Vt~e~Ll~~i 431 (460)
+. .+.+++. ..+++||+||||+||+++|+|+|||+|+||++||+++||.+||+||.++||+|+|+++|
T Consensus 324 ~~~~~f~~l~~t~~ew~~lk~~~~~ld~~IvEC~~d~~~~~W~~~R~R~DK~~pN~~~tv~~vleSI~d~Vt~e~L~~~~ 403 (461)
T 3kyh_C 324 RTYRKFAELSVSDEEWQNLKNLEQPLNGRIVECAKNQETGAWEMLRFRDDKLNGNHTSVVQKVLESINDSVSLEDLEEIV 403 (461)
T ss_dssp TTEEEEEECCCCTTTHHHHHHSCCCCTTEEEEECCCTTTSSCCEEEECTTSSSCCCHHHHHHHHHHHHHCCCSHHHHTTT
T ss_pred ccceecceeeecHHHHHHHhhccCCCCCEEEEEEEeCCCCeEEEEEECCCCCCCCchHHHHHHHHHHhccCCHHHHHHHH
Confidence 11 2223322 24569999999999988999999999999999999999999999999999999999866
Q ss_pred HHhhcCccchhccccchhhhhh
Q 012588 432 QEIIRLPMYADRIRNDSKAHLH 453 (460)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~ 453 (460)
++ |+.+|+++++
T Consensus 404 ~~----------i~~~wk~r~~ 415 (461)
T 3kyh_C 404 GD----------IKRCWDERRA 415 (461)
T ss_dssp HH----------HHHHHHHHHH
T ss_pred HH----------HHHHHHHHHh
Confidence 55 5566776655
No 3
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=100.00 E-value=2.6e-67 Score=544.83 Aligned_cols=327 Identities=29% Similarity=0.502 Sum_probs=269.5
Q ss_pred CCCCCccccchHHHHHHHHHHHhcccCCCCCCCCCCCCcccccccccc-cccccCceEEEEcCCeeEEEEEE-----ECC
Q 012588 94 DVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNL-QLLRQRYYYATWKADGTRYMMLI-----TID 167 (460)
Q Consensus 94 ~v~G~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~FPGsqPVSl~r~nl-~~l~~~~Y~V~~K~DG~R~Ll~i-----~~~ 167 (460)
+|+|++++.+.+.+||+.|++||+|+ ..+|||+|||||+++|+ +.|...+|+||||+||+|+||++ .++
T Consensus 11 ~i~g~~~~~~~~~~l~~~v~~l~~~~-----~~~FPg~~Pvsl~~~~l~~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~ 85 (395)
T 1p16_A 11 VIPGNKLDEEETKELRLMVAELLGRR-----NTGFPGSQPVSFERRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKGE 85 (395)
T ss_dssp CCSSEECCHHHHHHHHHHHHHHHTCS-----CCSCCCEEEEECCHHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHCCC-----CCCCCCCceecccHHHHHHhhCcCCEEEEECccceEEEEEEeecccCCC
Confidence 37899999999999999999999874 48999999999999999 78888899999999999999999 346
Q ss_pred EEEEEeCCCcccccc-CcCCcccCCCCccccCCCceeeeeEEEEecCCCCCcceeEEEEeeeeecCCccccCCCHHHHHH
Q 012588 168 GCYLIDRCFNFRRVQ-MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWK 246 (460)
Q Consensus 168 ~vyLidR~~~~~~v~-~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~~~~~~~~ryliFDiL~~~G~~l~~~pf~eRl~ 246 (460)
++||++|+++++.++ .+||+......-....+.+|+||||||+++.++. +.+++|+|||||+++|++|+++||.+|++
T Consensus 86 ~v~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~~~-~~~~~f~~FDlL~~~G~dl~~~pl~eR~~ 164 (395)
T 1p16_A 86 GVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNVS-EPVLRYVIFDALAIHGKCIIDRPLPKRLG 164 (395)
T ss_dssp EEEEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSSS-CCEEEEEEEEEEEETTEECTTSCHHHHHH
T ss_pred EEEEEeCCCceEEeccccCCcccccccchhccCCcceeeeEEEEeccCCC-cceeEEEEEEEEEECCeEcccCCHHHHHH
Confidence 899999999866555 7899875421000123578999999999875432 25789999999999999999999999999
Q ss_pred HHHHHhcCccchhhccccccCCC-CccCCCCCeEEEeccceechhHHHHHHHhccccCCCCceEEEEcCCCCCccCCCCC
Q 012588 247 MLEKEVIEPRNYERHNIYQSRNP-YYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEG 325 (460)
Q Consensus 247 ~L~~~i~~pr~~~~~~l~~~~~~-~~~~~~~pf~I~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G~~~~ 325 (460)
+|++.++.|+...++ .+| ....+.+||.|+.++++++++++++|+. ++++.|++||||||+.++||.+|++..
T Consensus 165 ~L~~~i~~~~~~~~~-----~~~~~~~~~~~pf~v~~~~~~~~~~~~~~~~~-~~~~~~g~EGlI~K~~ds~Y~~Gr~~~ 238 (395)
T 1p16_A 165 YITENVMKPFDNFKK-----HNPDIVNSPEFPFKVGFKTMLTSYHADDVLSK-MDKLFHASDGLIYTCAETPYVFGTDQT 238 (395)
T ss_dssp HHHHHTHHHHHHHHH-----HCHHHHSCTTSCCEEEECCCEEGGGTHHHHTT-GGGCSSCEEEEEEEESSSCCCSEEEEE
T ss_pred HHHHHhhcccHhhhh-----cCccccccccCceEEEEecchhHHHHHHHHHH-HHhcCCCCCeEEEEeCCCCcCCCCccc
Confidence 999988777543221 111 1233568999999999999998899865 467899999999999999999999999
Q ss_pred eEEEccCCCceEEEEEEEec----------CCc-------------eeEEEEeCCce-eeecCceeEecCC-------CC
Q 012588 326 LLKWKYARMNSVDFLFEVTD----------DDR-------------QLLYVFERGKK-KLMEGSSVEFTDR-------EP 374 (460)
Q Consensus 326 ~LKWKP~~~nTVDF~l~~~~----------~~~-------------~~L~v~~~g~~-~~~~~~~~~f~~~-------~~ 374 (460)
||||||++.|||||+|.+.. .++ ..|+|+.+|.. .+|. .+.|++. ..
T Consensus 239 wlKwK~~~~~TvDfvl~~~~~~~~~~~~~g~G~~~~~~dy~~~p~~~~l~v~~~~~~~~~f~--~~~ltd~e~~~l~~~~ 316 (395)
T 1p16_A 239 LLKWKPAEENTVDFQLEFVFNEVQDPDLDERDPTSTYLDYDAKPNLIKLRVWQGSNVHTDFA--KLDLSDDDWERLKALE 316 (395)
T ss_dssp EEEECCGGGCCEEEEEEEECEEEECTTSCTTSTTCEEEECSSCCSEEEEEEECSTTCEEEEE--EECCCHHHHHHHHHSS
T ss_pred eEEEecCCCeEEEEEEEEEecccccccccccCccccccccccccceeEEEEEeCCcccceee--EEEeCHHHHHHhHhhc
Confidence 99999999999999998541 111 34678776643 3444 2344431 25
Q ss_pred CCCCceEEEEEEe-CCCCeeEEEEEecCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHh
Q 012588 375 SFYSGKIIECTWD-PDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEI 434 (460)
Q Consensus 375 ~~~dg~IvEC~~d-~~~~~W~f~R~R~DK~~pN~~~tv~~v~~SI~~~Vt~e~Ll~~i~~~ 434 (460)
+.++|+||||.|+ +++|.|+|+|+|+||+.||+++||.+||+||.++||+|+|++++++|
T Consensus 317 ~~~~~~IvEc~~~~~~~g~wr~~R~R~DK~~pN~~~t~~~vl~si~~~vt~eeL~~~~~~~ 377 (395)
T 1p16_A 317 QPLQGRIAECRQSTTKKGYWEMLRFRNDKSNGNHISVVEKILVSIKDGVKEKEVIEWCPKI 377 (395)
T ss_dssp SCCTTCEEEEEECSSSTTEEEEEEECTTCSSCCBHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred ccCCCEEEEEEeecCCCCccEEEEEeCCCCCcChHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6789999999998 56899999999999999999999999999999999999999998875
No 4
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=100.00 E-value=2.7e-60 Score=481.24 Aligned_cols=301 Identities=23% Similarity=0.382 Sum_probs=242.4
Q ss_pred ccccCCCCCCCccccch-HHHHHHHHHH--HhcccCCCCCCCCCCCCcccccccccccccccCceEEEEcCCeeEEEEEE
Q 012588 88 VTMTNDDVLGDEIPNDQ-QDAFRHFCYQ--TLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLI 164 (460)
Q Consensus 88 ~~~~~~~v~G~~~~~~~-~~~~r~~~~~--l~~~~~~~~~~~~FPGsqPVSl~r~nl~~l~~~~Y~V~~K~DG~R~Ll~i 164 (460)
.||.+. ++|++.++++ +..+.+.++. ||+|+ ..+|||+|||||+++|++.|...+|+||||+||+|++|++
T Consensus 19 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Fpg~~Pv~~~~~~~~~L~~~~y~ve~K~DG~R~ll~~ 92 (330)
T 1ckm_A 19 LTLNGL-QIKLHKVVGESRDDIVAKMKDLAMDDHK-----FPRLPGPNPVSIERKDFEKLKQNKYVVSEKTDGIRFMMFF 92 (330)
T ss_dssp EEETTE-EEEEEEECHHHHHHHHHHHHHHTTCCCS-----SCCCSSEEEEECCGGGHHHHHHSCEEEEEEECSEEEEEEE
T ss_pred cccCCc-ccccccCCchhhHHHHHHHHHhhhcCCC-----CCCCCCCceeCcchHHHhhCCcCCEEEEECcceEEEEEEE
Confidence 456554 6677666654 3344444443 58774 4999999999999999999988899999999999999999
Q ss_pred E---C-CEEEEEeCCCccccccCcCCcccCCCCccccCCCceeeeeEEEEecCCCCCcceeEEEEeeeeecCCccccCCC
Q 012588 165 T---I-DGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERP 240 (460)
Q Consensus 165 ~---~-~~vyLidR~~~~~~v~~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~~~~~~~~ryliFDiL~~~G~~l~~~p 240 (460)
+ + +++||+||+++.. +..||.... ..+.+|+||||||++..+ ..++|+|||||+++|++|+++|
T Consensus 93 ~~~~g~g~v~L~sR~~~~~--t~~fp~~~~------~~~~~~vLDGElv~~~~~----~~~~f~vFDlL~~~G~dl~~~p 160 (330)
T 1ckm_A 93 TRVFGFKVCTIIDRAMTVY--LLPFKNIPR------VLFQGSIFDGELCVDIVE----KKFAFVLFDAVVVSGVTVSQMD 160 (330)
T ss_dssp EEETTEEEEEEECTTCCEE--ECCCSCCCT------TGGGCEEEEEEEEEETTT----TEEEEEEEEEEEETTEECTTSC
T ss_pred EecCCCCEEEEEeCCCCEE--eccChhhhh------ccCCCeeEEEEEEEEcCC----CeEEEEEEeeeeeCCcccccCC
Confidence 8 4 6799999999843 456776421 235789999999998643 2489999999999999999999
Q ss_pred HHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHHHHhccccCC--CCceEEEEcCCCCC
Q 012588 241 FYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSH--DADGLVFQGWDDPY 318 (460)
Q Consensus 241 f~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~~~~l~h--~~DGLIF~p~~spY 318 (460)
|.+|+++|++.+..+. ....+||.|+.+++++. .++++|+++.+.+.| ++||||||+.++||
T Consensus 161 l~eRr~~L~~~l~~~~---------------~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~yg~EGlI~K~~dspY 224 (330)
T 1ckm_A 161 LASRFFAMKRSLKEFK---------------NVPEDPAILRYKEWIPL-EHPTIIKDHLKKANAIYHTDGLIIMSVDEPV 224 (330)
T ss_dssp HHHHHHHHHHHHTTCC---------------CCTTSSSEEEECCCEET-TCHHHHHHHHHHHHHHSCEEEEEEEESSSCC
T ss_pred HHHHHHHHHHHHhhhc---------------ccCCCCeEEEEEEEEeh-hHHHHHHHHHHHHhccCCCceEEEeeCCCcc
Confidence 9999999999773211 01246888999999999 888999877888999 99999999999999
Q ss_pred ccCCCCCeEEEccCCCceEEEEEEEecCCceeEEEEeCCceeeecCceeEecCCCCCCCCceEEEEEEeCCCCeeEEEEE
Q 012588 319 VPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRI 398 (460)
Q Consensus 319 ~~G~~~~~LKWKP~~~nTVDF~l~~~~~~~~~L~v~~~g~~~~~~~~~~~f~~~~~~~~dg~IvEC~~d~~~~~W~f~R~ 398 (460)
.+||+..||||||++.+|+||+|. .+.+...|+++..|... +|+....+.++|+||||.|+ +|.|+|+|+
T Consensus 225 ~~Gr~~~~lKwK~~~~~tvDfvi~-~g~g~~gl~~~~~~~~v-------p~~~~~k~~~~g~IvE~~~~--~G~wr~~R~ 294 (330)
T 1ckm_A 225 IYGRNFNLFKLKPGTHHTIDFIIM-SEDGTIGIFDPNLRKNV-------PVGKLDGYYNKGSIVECGFA--DGTWKYIQG 294 (330)
T ss_dssp CCEEEEEEEEECSTTCCCEEEEEC-STTCCEEEEETTTTEEE-------ECCCCSSCCCTTCEEEEEEE--TTEEEEEEE
T ss_pred cCCCccCeEEEEeCCCceEEEEEE-ccCCeEEEEeCCCCcee-------eeeeeehhhcCCeEEEEEEE--CCceEEEEE
Confidence 999999999999999999999996 33344445543333333 33322112289999999998 689999999
Q ss_pred ecCCCCCChHHHHHHHHHhcccCCCHHHHHHHHH
Q 012588 399 RTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQ 432 (460)
Q Consensus 399 R~DK~~pN~~~tv~~v~~SI~~~Vt~e~Ll~~i~ 432 (460)
|+||+.||+++|+.+|++||.++||+|+|+++|+
T Consensus 295 R~DK~~~n~~~t~~~v~~si~~~vt~eeL~~~~~ 328 (330)
T 1ckm_A 295 RSDKNQANDRLTYEKTLLNIEENITIDELLDLFK 328 (330)
T ss_dssp CTTCSSCCBHHHHHHHHHHHHHCCCHHHHTTCC-
T ss_pred eCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHhhc
Confidence 9999999999999999999999999999997654
No 5
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=99.95 E-value=1.2e-27 Score=240.30 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=127.2
Q ss_pred cccCceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCC-CCccccCCCceeeeeEEEEecCCCCC-----
Q 012588 144 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDSR----- 217 (460)
Q Consensus 144 l~~~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~l~~~~~~~TlLDGElV~d~~~~~~----- 217 (460)
+...+|++++|+||+|+++++.+++++|++|+++ .++..||+.... ..+ ...+++||||||.....+..
T Consensus 22 ~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~--~~t~~fPel~~~~~~l---~~~~~iLDGElv~~d~~g~~~F~~l 96 (310)
T 1vs0_A 22 LKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGR--DVTAEYPQLRALAEDL---ADHHVVLDGEAVVLDSSGVPSFSQM 96 (310)
T ss_dssp CCTTTEEEEEECCSEEEEEEEETTEEEEEETTCC--BCGGGCGGGHHHHHHT---TTCEEEEEEEEECBCTTSCBCHHHH
T ss_pred cCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCC--CchhhchhHHHHHHhC---CCccEEEeeEEEEECCCCCcCHHHH
Confidence 3466899999999999999999999999999998 447789976432 111 12589999999996432210
Q ss_pred -----cceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHH
Q 012588 218 -----RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVN 292 (460)
Q Consensus 218 -----~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~ 292 (460)
...++|++||||++||++++++||.+|+++|++.+...+ +...+++.. .+.
T Consensus 97 ~~r~~~~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~~-----------------------i~~~~~~~~-~~~ 152 (310)
T 1vs0_A 97 QNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATS-----------------------LTVPELLPG-DGA 152 (310)
T ss_dssp HTCCTTSCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHSC-----------------------CCCCCCCCS-SHH
T ss_pred HhhccCCcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCCc-----------------------EEECccCch-HHH
Confidence 124799999999999999999999999999999764211 111122222 356
Q ss_pred HHHHHhccccCCCCceEEEEcCCCCCccC-CCCCeEEEccCCCceEEEEE
Q 012588 293 KLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLF 341 (460)
Q Consensus 293 ~ll~~~~~~l~h~~DGLIF~p~~spY~~G-~~~~~LKWKP~~~nTVDF~l 341 (460)
++|+. .+.|+.||||+|+.+++|.+| |+..|||||+. +|+||+|
T Consensus 153 ~~~~~---~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~--~~~D~vv 197 (310)
T 1vs0_A 153 QAFAC---SRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHW--NTQEVVI 197 (310)
T ss_dssp HHHHH---HHHTTCCEEEEEETTCCCCTTCEEEEEEEEESS--EEEEEEE
T ss_pred HHHHH---HHHcCCceEEEeCCCCCcCCCCcChHHhccchh--eEEEEEE
Confidence 67764 468999999999999999999 78899999985 7999988
No 6
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=99.94 E-value=7.9e-27 Score=251.33 Aligned_cols=187 Identities=17% Similarity=0.222 Sum_probs=136.4
Q ss_pred CCCCCCcccccccc----cccc-cc--cCceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCCCccccC
Q 012588 126 MQFPGSHPVSLNSD----NLQL-LR--QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKT 198 (460)
Q Consensus 126 ~~FPGsqPVSl~r~----nl~~-l~--~~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~l~~~~ 198 (460)
.+++..+||..--- .+.. +. ..+|+++||+||+|+++++.++++++++|++. .++..||+.... +....
T Consensus 214 ~~~~~~~P~~PmLA~~~~~~~~~~~~~~~~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~--~~t~~fPel~~~--~~~~l 289 (561)
T 2cfm_A 214 VQVQLGKPIKPMLAQQAASIRDALLEMGGEAEFEIKYDGARVQVHKDGSKIIVYSRRLE--NVTRAIPEIVEA--LKEAI 289 (561)
T ss_dssp CCCCTTSCCCCCEEEEESCHHHHHHHTTSCEEEEEECCSEEEEEEEETTEEEEECTTCC--BCGGGCHHHHHH--HHHHB
T ss_pred cCCCCCCCCCCeeCCcCCChhHHHhhcCCcEEEEEeEceEEEEEEEECCEEEEEeCCCC--CchhhhhhHHHH--HHHhC
Confidence 45666677753221 2221 21 23899999999999999999999999999987 446789975321 11012
Q ss_pred -CCceeeeeEEEEecCCCC-------------C--------cceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCcc
Q 012588 199 -HHFTLLDGEMIIDKLPDS-------------R--------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPR 256 (460)
Q Consensus 199 -~~~TlLDGElV~d~~~~~-------------~--------~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr 256 (460)
..+++||||||.....+. . ..+++|++||||++||++++++||.+|+++|++.+...
T Consensus 290 ~~~~~iLDGElv~~d~~g~~~~F~~L~~r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~- 368 (561)
T 2cfm_A 290 IPEKAIVEGELVAIGENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN- 368 (561)
T ss_dssp CSSEEEEEEEEEEBCTTSSBCCTHHHHHHHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-
T ss_pred CCcceEeeeEEEEEcCCCcccCHHHHHHHhhcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-
Confidence 268999999999642111 0 12478999999999999999999999999999866321
Q ss_pred chhhccccccCCCCccCCCCCeEEEeccceech---hHHHHHHHhccccCCCCceEEEEcCCCCCccC-CCCCeEEEccC
Q 012588 257 NYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYA 332 (460)
Q Consensus 257 ~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~---~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G-~~~~~LKWKP~ 332 (460)
+. +...+++..+ .++++|+. .+.++.||||+|+.++||.+| |+..||||||.
T Consensus 369 ------------~~---------i~~~~~~~~~~~~~~~~~~~~---~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~ 424 (561)
T 2cfm_A 369 ------------EK---------IKVAENLITKKVEEAEAFYKR---ALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPT 424 (561)
T ss_dssp ------------SS---------EEECCEEEESCHHHHHHHHHH---HHHTTCCEEEEECTTCCCCTTCEEEEEEEECSS
T ss_pred ------------Cc---------EEEeeeEEcCCHHHHHHHHHH---HHHcCCceeEEeCCCCCCCCCCcCCCeEEEccc
Confidence 00 3344444443 34556653 578999999999999999999 57889999996
Q ss_pred CCceEEEEEE
Q 012588 333 RMNSVDFLFE 342 (460)
Q Consensus 333 ~~nTVDF~l~ 342 (460)
. +|+||+|-
T Consensus 425 ~-dt~D~vVi 433 (561)
T 2cfm_A 425 M-ENLDLVII 433 (561)
T ss_dssp C-CCEEEEEE
T ss_pred C-cceeEEEE
Confidence 5 89999983
No 7
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=99.93 E-value=1.4e-25 Score=243.96 Aligned_cols=165 Identities=16% Similarity=0.269 Sum_probs=127.5
Q ss_pred ceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCCCccccC-CCceeeeeEEEEec--CCCC--------
Q 012588 148 YYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKT-HHFTLLDGEMIIDK--LPDS-------- 216 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~l~~~~-~~~TlLDGElV~d~--~~~~-------- 216 (460)
+|+++||+||+|+++++.++++++++|+++ .++..||+.... +.... ..+++||||||... .+..
T Consensus 274 ~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~--~~t~~fP~l~~~--~~~~l~~~~~iLDGElv~~d~~~g~~l~F~~L~~ 349 (621)
T 2hiv_A 274 NAIVDYKYDGERAQIHKKEDKIFIFSRRLE--NITSQYPDVVDY--VSKYIEGKEFIIEGEIVAIDPESGEMRPFQELMH 349 (621)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEECTTCC--BCGGGCHHHHHH--HHHHBCCSSEEEEEEEEEBCTTTCCBCCTHHHHH
T ss_pred cEEEEEEEcceeEEEEEcCCEEEEEcCCCc--CcHhhhhhHHHH--HHHhCCCcCeEEeEEEEEeecCCCCcCCHHHHhh
Confidence 899999999999999999999999999997 446779875321 11011 36899999999953 1210
Q ss_pred ---C--------cceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccc
Q 012588 217 ---R--------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 285 (460)
Q Consensus 217 ---~--------~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f 285 (460)
. ..+++|++||||++||++++++||.+|+++|++.+... +. +...++
T Consensus 350 r~~~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-------------~~---------i~~~~~ 407 (621)
T 2hiv_A 350 RKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-------------DY---------VKIAHH 407 (621)
T ss_dssp HHHCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-------------SS---------EEECCE
T ss_pred hccccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-------------Cc---------EEEeee
Confidence 0 12578999999999999999999999999999976431 00 333444
Q ss_pred eech---hHHHHHHHhccccCCCCceEEEEcC--CCCCccC-CCCCeEEEccCCCc----eEEEEE
Q 012588 286 WLLS---TVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYARMN----SVDFLF 341 (460)
Q Consensus 286 ~~~~---~~~~ll~~~~~~l~h~~DGLIF~p~--~spY~~G-~~~~~LKWKP~~~n----TVDF~l 341 (460)
+..+ .+.++|+. .+.++.||||+|+. ++||.+| |+..||||||..++ |+||+|
T Consensus 408 ~~~~~~~~~~~~~~~---~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~dt~D~vV 470 (621)
T 2hiv_A 408 IQANNVEDLKSFFYR---AISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVV 470 (621)
T ss_dssp EEESSHHHHHHHHHH---HHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSCEEEEEEE
T ss_pred EEeCCHHHHHHHHHH---HHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcCceeEEEE
Confidence 4443 34556654 57899999999999 9999999 67899999998765 999998
No 8
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=99.92 E-value=1.2e-24 Score=238.79 Aligned_cols=172 Identities=15% Similarity=0.227 Sum_probs=127.2
Q ss_pred cccCceEEEEcCCeeEEEEEEECC-EEEEEeCCCccccccCcCCcccCC-CCccccCCCceeeeeEEEEecCCCC-----
Q 012588 144 LRQRYYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS----- 216 (460)
Q Consensus 144 l~~~~Y~V~~K~DG~R~Ll~i~~~-~vyLidR~~~~~~v~~~FP~~~~~-~~l~~~~~~~TlLDGElV~d~~~~~----- 216 (460)
+...+|+++||+||+|++++++++ .++|++|+++ .++..||+.... ..+......+++||||||.....++
T Consensus 327 ~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~--d~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F 404 (688)
T 1x9n_A 327 FEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQE--DNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPF 404 (688)
T ss_dssp TTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSC--BCTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCH
T ss_pred cCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCC--cccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCH
Confidence 455689999999999999999654 6999999997 446789876431 1111012368999999999432111
Q ss_pred ---------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEE
Q 012588 217 ---------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVR 281 (460)
Q Consensus 217 ---------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~ 281 (460)
....++|++||||++||++++++||.+|+++|++.+.... +. +.
T Consensus 405 ~~L~~r~r~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~------------~~---------i~ 463 (688)
T 1x9n_A 405 QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETE------------GE---------FV 463 (688)
T ss_dssp HHHTTSCSSCCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBT------------TT---------EE
T ss_pred HHHHHHhhcccchhhcccceEEEEEechhhcCCccccCCHHHHHHHHHHhhccCC------------Cc---------EE
Confidence 0125899999999999999999999999999999764211 00 23
Q ss_pred eccceech---hHHHHHHHhccccCCCCceEEEEcC--CCCCccC-CCCCeEEEccCCC----ceEEEEE
Q 012588 282 RKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYARM----NSVDFLF 341 (460)
Q Consensus 282 ~K~f~~~~---~~~~ll~~~~~~l~h~~DGLIF~p~--~spY~~G-~~~~~LKWKP~~~----nTVDF~l 341 (460)
..+++... .+..+|+. .+.|+.||||+++. +++|.+| |+..||||||..+ +|+||+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~---a~~~g~EGlV~K~~~~ds~Y~~GkRs~~WlK~K~~y~~~~~dt~D~vV 530 (688)
T 1x9n_A 464 FATSLDTKDIEQIAEFLEQ---SVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVV 530 (688)
T ss_dssp ECCEECCCCHHHHHHHHHH---HHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEHHHHHSSCEEEEEEE
T ss_pred EEeeEecCCHHHHHHHHHH---HHhcCCceeEEeecccCCCCCCCCcCchHheeehhhhccccccccEEE
Confidence 33333333 44556654 57899999999999 8999998 5779999999653 7999987
No 9
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=99.91 E-value=1.5e-24 Score=233.00 Aligned_cols=165 Identities=23% Similarity=0.338 Sum_probs=125.0
Q ss_pred CceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCCCccccCCCceeeeeEEEEecCCCC----------
Q 012588 147 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS---------- 216 (460)
Q Consensus 147 ~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~~~---------- 216 (460)
.+|++++|+||+|+++++.++++.+++|++. .++..||+.... +......+++||||||....+..
T Consensus 245 ~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~--d~t~~fPel~~~--~~~~l~~~~iLDGElv~~~~g~~~~F~~L~~r~ 320 (558)
T 3gde_A 245 RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLE--NVTNALPDIVEE--IKKSVKPGVILDGEVIAVKEGKPMPFQHVLRRF 320 (558)
T ss_dssp SSEEEEEECSSEEEEEEECSSCCEEEETTCC--BCGGGCHHHHHH--HHHHBCSSEEEEEEEEEEETTEEECHHHHHHHH
T ss_pred cceEEEEeEeeEEEEEEEeCCEEEEEcCCCC--cccccchHHHHH--HHhhCCCCeEEEeEEEEcCCCcCCCHHHHHHHh
Confidence 6899999999999999999999999999987 557789976421 11112335999999998632210
Q ss_pred --C--------cceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccce
Q 012588 217 --R--------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFW 286 (460)
Q Consensus 217 --~--------~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~ 286 (460)
. ..+++|++||+|++|| +++++||.+|+++|++.+..+. . |...+.+
T Consensus 321 ~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~~~-------------~---------i~~~~~~ 377 (558)
T 3gde_A 321 RRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNESE-------------K---------IKLAKQI 377 (558)
T ss_dssp HC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCCCS-------------S---------EEECCEE
T ss_pred ccccchhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCCCC-------------e---------EEEeeeE
Confidence 0 1247899999999999 9999999999999999764211 0 2233333
Q ss_pred ec---hhHHHHHHHhccccCCCCceEEEEcCCCCCccC-CCCCeEEEccCCCceEEEEEE
Q 012588 287 LL---STVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLFE 342 (460)
Q Consensus 287 ~~---~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G-~~~~~LKWKP~~~nTVDF~l~ 342 (460)
.. ..+..+|+. .+.++.||||+++.++||.+| |+..|+||||. ..|+||+|-
T Consensus 378 ~~~~~~~~~~~~~~---~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~-~~t~D~vVi 433 (558)
T 3gde_A 378 VTDSVDEVRKMYDE---AISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAI-METLDLVVV 433 (558)
T ss_dssp EESCHHHHHHHHHH---HHHTTCCEEEEECTTCBCCTTCEEEEEEEEESS-CCCEEEEEE
T ss_pred ecCCHHHHHHHHHH---HHHcCCceeEEecCCCCCCCCCcCCceEEEecc-cceEEEEEE
Confidence 33 344556654 568999999999999999999 67899999985 689999983
No 10
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=99.90 E-value=7.2e-24 Score=211.53 Aligned_cols=217 Identities=17% Similarity=0.147 Sum_probs=135.2
Q ss_pred cCceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCCCccccCCCceeeeeEEEEecCC-----------
Q 012588 146 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP----------- 214 (460)
Q Consensus 146 ~~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~l~~~~~~~TlLDGElV~d~~~----------- 214 (460)
..+|++|+|+||+|+++ ++ +|++|+++. ++ .|+... .+... . +++||||||+....
T Consensus 18 ~~~~~~E~K~DG~R~~~----~g-~l~SR~g~~--~t--~p~l~~--~~~~~-~-~~iLDGElv~~~~~F~~l~~~~~~~ 84 (297)
T 1fvi_A 18 QFPCLATPKIAGIRSVK----QT-QMLSRTFKP--IR--NSVMNR--LLTEL-L-PEGSDGEISIEGATFQDTTSAVMTG 84 (297)
T ss_dssp CSSEEEEECCCSEEEEE----SS-SEECTTSCB--CS--CHHHHH--HHHHH-S-CTTEEEEEECTTSCHHHHHHHHHSC
T ss_pred CCcEEEEeeEeeeeEEe----cC-EEECCCCcc--cC--cHHHHH--HHHhc-C-CeeEEEEEEECCCCHHHHHHHhccC
Confidence 46899999999999987 44 999999872 22 354321 11111 2 89999999984310
Q ss_pred CC-CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEecc--ce---ec
Q 012588 215 DS-RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKD--FW---LL 288 (460)
Q Consensus 215 ~~-~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~--f~---~~ 288 (460)
.. ....++|++||||+++ +..||.+|+++|++.+...... . .. .. |+..+ .+ ..
T Consensus 85 ~~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~-~------~~-------~~--i~~~~~~~~~~~~~ 144 (297)
T 1fvi_A 85 HKMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHI-L------EH-------AQ--VKIIPLIPVEINNI 144 (297)
T ss_dssp C----CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGG-G------GC-------SS--EEEEECCCEEECSH
T ss_pred CCCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCc-c------cc-------ce--EEEcCcceEecCCH
Confidence 00 1135899999999987 7899999999999977431100 0 00 01 22222 22 33
Q ss_pred hhHHHHHHHhccccCCCCceEEEEcCCCCCccCCCC----CeEEEccCCCceEEEEEEEe--c-----------------
Q 012588 289 STVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHE----GLLKWKYARMNSVDFLFEVT--D----------------- 345 (460)
Q Consensus 289 ~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G~~~----~~LKWKP~~~nTVDF~l~~~--~----------------- 345 (460)
..+.++|+. .+.++.||||+++.++||.+||+. .||||||. .|+||+|--. +
T Consensus 145 ~~~~~~~~~---~~~~g~EGlv~K~~ds~Y~~GRs~~~~g~wlK~K~~--~~~d~vVig~~~g~~~~~~~~~~~~g~~~r 219 (297)
T 1fvi_A 145 TELLQYERD---VLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQF--KDAEATIISMTALFKNTNTKTKDNFGYSKR 219 (297)
T ss_dssp HHHHHHHHH---HHHTTCCSEEEECTTCCCCSSBCCTTTTSSEEECCC--EEEEEEEEEEEESCC---------------
T ss_pred HHHHHHHHH---HHHCCCcEEEEECCCCCcCCCCCCCCCCCeEEECCC--CCEEEEEEEEEeCccccccccccccccccc
Confidence 445556654 578999999999999999999988 99999995 5999998322 2
Q ss_pred ----CCc------eeEEEEeCCceeeecCceeEecCC-------CCCCCCceEEEEEEeCC--CC---eeEEEEEecCCC
Q 012588 346 ----DDR------QLLYVFERGKKKLMEGSSVEFTDR-------EPSFYSGKIIECTWDPD--VQ---LWKCMRIRTDKS 403 (460)
Q Consensus 346 ----~~~------~~L~v~~~g~~~~~~~~~~~f~~~-------~~~~~dg~IvEC~~d~~--~~---~W~f~R~R~DK~ 403 (460)
.++ +.|.+...|. .+. -..-|++. ....+.|+||||.|..- +| .|+|+|+|+||+
T Consensus 220 ~~~~~G~~~~g~~g~ll~~~~g~--~~~-vgtGftd~~~~~l~~~~~p~~g~v~ev~~~~~t~~g~lRfP~f~r~R~Dk~ 296 (297)
T 1fvi_A 220 STHKSGKVEEDVMGSIEVDYDGV--VFS-IGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEED 296 (297)
T ss_dssp ----CCCTTCCCEEEEEECSTTC--CEE-ECSSCCHHHHHHHHHTHHHHTTCEEEEEEECC-----CEEEEEEEEC----
T ss_pred cccCCCcccCCcEEEEEEccCCe--EEE-ECCCCCHHHHHHHHhhcCcccCcEEEEEEEEeCCCCCccCCeEEEEEcCCC
Confidence 211 1223322121 000 00013331 12346789999999742 22 699999999995
No 11
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=99.88 E-value=1.8e-21 Score=209.94 Aligned_cols=166 Identities=19% Similarity=0.310 Sum_probs=120.7
Q ss_pred CceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccC-CCC-ccc--cCCCceeeeeEEEEecC--CCC----
Q 012588 147 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNS-NEG-LGE--KTHHFTLLDGEMIIDKL--PDS---- 216 (460)
Q Consensus 147 ~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~-~~~-l~~--~~~~~TlLDGElV~d~~--~~~---- 216 (460)
.+|+++||+||.|++++..++++.+++|++.- + ||+... ... +.. ....+++||||||.-.. +..
T Consensus 247 ~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~--~---~p~~~~~l~~~l~~~~~~~~~~iLDGElv~~d~~~g~~~~F~ 321 (579)
T 3l2p_A 247 NGMFSEIKYDGERVQVHKNGDHFSYFSRSLKP--V---LPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFG 321 (579)
T ss_dssp TCEEEEECCCSEEEEEEEETTEEEEECTTSCB--C---CGGGTTTGGGTHHHHSTTCSEEEEEEEEEEBCTTTCCBCCGG
T ss_pred CCeEEEEccCcEEEEEEEECCEEEEECCCCCc--c---ChhHHHHHHHHHHHhcCcCCceEEEeEEEEEeCCCCcccCHH
Confidence 57999999999999999999999999999862 1 454311 100 100 11357999999998432 111
Q ss_pred ----------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccce
Q 012588 217 ----------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFW 286 (460)
Q Consensus 217 ----------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~ 286 (460)
...++.|++||+|++||++++++||.+|+++|++.+.. .. + + +...++.
T Consensus 322 ~L~~~~~~~~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~-~~-----------~-------~--i~~~~~~ 380 (579)
T 3l2p_A 322 TLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVE-IP-----------N-------R--IMFSEMK 380 (579)
T ss_dssp GGSHHHHHHCSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCC-BT-----------T-------T--EEECCEE
T ss_pred HHHHHhhhhcccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhc-CC-----------C-------e--EEEeeeE
Confidence 01257999999999999999999999999999986642 10 1 1 2222222
Q ss_pred ---echhHHHHHHHhccccCCCCceEEEEcCCCCCccCCCCCeEEEccCCC------ceEEEEEE
Q 012588 287 ---LLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARM------NSVDFLFE 342 (460)
Q Consensus 287 ---~~~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G~~~~~LKWKP~~~------nTVDF~l~ 342 (460)
....+.++|+. .+.++.||||++..++||.+|+. .|+|||+..+ .|+|++|-
T Consensus 381 ~~~~~~~~~~~~~~---a~~~g~EGlv~K~~ds~Y~~Grr-~WlK~K~~y~~~g~~~~t~D~vVi 441 (579)
T 3l2p_A 381 RVTKALDLADMITR---VIQEGLEGLVLKDVKGTYEPGKR-HWLKVKKDYLNEGAMADTADLVVL 441 (579)
T ss_dssp EECSHHHHHHHHHH---HHHTTCCCEEEEESSCCCCTTCE-EEEEECTTTCC---CCEEEEEEEE
T ss_pred EcCCHHHHHHHHHH---HHHhCCCceEEecCcCCCCCCCe-eeEEEechhhccccccccccEEEE
Confidence 23345556654 56889999999999999999987 8999999754 69999873
No 12
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=99.87 E-value=4.5e-22 Score=202.58 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=128.3
Q ss_pred cccccccccccc-cc-cCceEEEEcCCeeEEEEEEE-CCEEEEEeCCCc-cccc---cCcCCcccCCCCccc---cCCCc
Q 012588 132 HPVSLNSDNLQL-LR-QRYYYATWKADGTRYMMLIT-IDGCYLIDRCFN-FRRV---QMRFPCRNSNEGLGE---KTHHF 201 (460)
Q Consensus 132 qPVSl~r~nl~~-l~-~~~Y~V~~K~DG~R~Ll~i~-~~~vyLidR~~~-~~~v---~~~FP~~~~~~~l~~---~~~~~ 201 (460)
+||+.....+.. +. ...|++++|+||+|+++++. ++.++|++|+++ |..+ +..||..... +.. ....+
T Consensus 9 ~pv~pmL~~~~~~l~~~~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~--l~~~~~~~~~~ 86 (348)
T 1a0i_A 9 KAVSFVESAIKKALDNAGYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRL--LNDDRCFYKDG 86 (348)
T ss_dssp EEEECCHHHHHHHHHHHSSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHH--HHSTTCCCTTE
T ss_pred CcCchhhhcHHHHHhhcCcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHH--HhhhhccCCCC
Confidence 577554455543 32 24788888999999999998 578999999976 2211 1134433110 100 12348
Q ss_pred eeeeeEEEEecCC-----------------------------CC--------CcceeEEEEeeeeecC----Cccc---c
Q 012588 202 TLLDGEMIIDKLP-----------------------------DS--------RRQERRYLIYDMMAIN----QASV---I 237 (460)
Q Consensus 202 TlLDGElV~d~~~-----------------------------~~--------~~~~~ryliFDiL~~~----G~~l---~ 237 (460)
++||||||+...+ .. ....++|++||||++| |+++ +
T Consensus 87 ~iLDGElv~~~~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFDll~l~~~~~G~~l~~~~ 166 (348)
T 1a0i_A 87 FMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYAILPLHIVESGEDCDVMT 166 (348)
T ss_dssp EEEEEEEEESSSCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEEEEEHHHHHHCCCEEEEH
T ss_pred EEEEEEEEEeCCCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEeeEeeCCCCCCccchhhc
Confidence 9999999984211 00 0124799999999999 9999 8
Q ss_pred CCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceec---hhHHHHHHHhccccCCCCceEEEEcC
Q 012588 238 ERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL---STVNKLLKEFIPKLSHDADGLVFQGW 314 (460)
Q Consensus 238 ~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~---~~~~~ll~~~~~~l~h~~DGLIF~p~ 314 (460)
.+||.+|+++|++.+.. . ..+ .++..+++.+ ..+.++|+. .+.++.||||+++.
T Consensus 167 ~~pl~eRr~~L~~l~~~-~----------~~~---------~i~~~~~~~~~~~~~~~~~~~~---~~~~g~EGlv~K~~ 223 (348)
T 1a0i_A 167 LLMQEHVKNMLPLLQEY-F----------PEI---------EWQAAESYEVYDMVELQQLYEQ---KRAEGHEGLIVKDP 223 (348)
T ss_dssp HHHHHHHHHHHHHHHHH-C----------TTS---------EEEECCEEEESSHHHHHHHHHH---HHTTTCCCEEEECT
T ss_pred cCCHHHHHHHHHHHhhh-C----------CCC---------eEEEeccEecCCHHHHHHHHHH---HHHcCCceEEEeCC
Confidence 99999999999986531 0 000 2455555554 344556653 67899999999999
Q ss_pred CCCCccCCCCCeEEEccCCCceEEEEEE
Q 012588 315 DDPYVPRTHEGLLKWKYARMNSVDFLFE 342 (460)
Q Consensus 315 ~spY~~G~~~~~LKWKP~~~nTVDF~l~ 342 (460)
++||.+|++..||||||.. |+||+|.
T Consensus 224 ds~Y~~Grr~~wlK~K~~~--~~D~vVi 249 (348)
T 1a0i_A 224 MCIYKRGKKSGWWKMKPEN--EADGIIQ 249 (348)
T ss_dssp TCEECSEEEEEEEEESCCE--EEEEEEE
T ss_pred CCCCCCCCccCcEEEeecc--cEEEEEE
Confidence 9999999876799999965 9999983
No 13
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=148.41 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=80.7
Q ss_pred eEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCC--------CCccccCCCceeeeeEEEEecCCCC----
Q 012588 149 YYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN--------EGLGEKTHHFTLLDGEMIIDKLPDS---- 216 (460)
Q Consensus 149 Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~--------~~l~~~~~~~TlLDGElV~d~~~~~---- 216 (460)
|++++|+||+|+++++.++++.+++|++. .++..||+.... ..+. ....+++||||||.-...+.
T Consensus 1 f~~E~K~DG~R~q~~~~g~~v~l~SR~g~--d~t~~fPel~~~~~l~~~i~~~~~-~~~~~~iLDGEiv~~d~~~~~f~~ 77 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDVYKYFSRNGY--NYTDQFGASPTEGSLTPFIHNAFK-ADIQICILDGEMMAYNPNTQTFMQ 77 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEECSSCC--BCTTTSCSSTTC--CCSGGGSCCC-TTCCEEEEEEEEEEEETTTTEECC
T ss_pred CEEEEEECeEEEEEEEECCEEEEEeCCCC--CchhhccchhhhcchhHHHHHHHh-ccCCceEeeeEEEEecCCCCCHHH
Confidence 67899999999999999999999999997 568899976421 1111 11367999999999432211
Q ss_pred -------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhc
Q 012588 217 -------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVI 253 (460)
Q Consensus 217 -------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~ 253 (460)
...++.|++||+|++||++++++||.+|+++|++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~ 127 (139)
T 3vnn_A 78 KGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFT 127 (139)
T ss_dssp C-------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCC
T ss_pred HHhhhhhhhhhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhh
Confidence 0135799999999999999999999999999999663
No 14
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=98.84 E-value=1.3e-08 Score=103.22 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=78.0
Q ss_pred CCCCCCcccccccccccccccCceEEEEcCCeeEEEEEEECCEEEEEeCCCcccc-ccCcCCcccCCCCccccCCCceee
Q 012588 126 MQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRR-VQMRFPCRNSNEGLGEKTHHFTLL 204 (460)
Q Consensus 126 ~~FPGsqPVSl~r~nl~~l~~~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~-v~~~FP~~~~~~~l~~~~~~~TlL 204 (460)
.+||--.-+-+-..-+.......|+|+||.||.+.-++..+++++.++|.+.+.. .+-++|...++ .+. ..+.+.+|
T Consensus 52 ~GyP~I~R~~~L~~~i~~~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~-~f~-~~~P~l~L 129 (370)
T 3qwu_A 52 WGYPHIGRIFLLETGLREQFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDL-RIL-DENPDLVI 129 (370)
T ss_dssp CCCCCCEEESCHHHHHHHHCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCC-HHH-HHCTTEEE
T ss_pred CCCCChhhhhchhhhhhhcCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCc-hhh-hcCCCeEE
Confidence 7888543332222223322247999999999977777767788999999986310 02223322221 111 11368999
Q ss_pred eeEEEEecCC------CCCcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHh
Q 012588 205 DGEMIIDKLP------DSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEV 252 (460)
Q Consensus 205 DGElV~d~~~------~~~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i 252 (460)
||||+.-..+ ........|+|||+... ....-+|+.+|++++++.-
T Consensus 130 dGEl~g~~npy~~~s~~y~~~~i~F~VFDV~d~--~~~~~L~~~eR~~ll~~~~ 181 (370)
T 3qwu_A 130 CAEVAGPENPYIEESPPYVKEDVQLFVFDFMKK--NEQGFLSQEEKMELIEKYN 181 (370)
T ss_dssp EEEEECTTCSSCSCCCTTCCSSCEEEEEEEEET--TCCSCCCHHHHHHHHHHHT
T ss_pred EEEEEcCCCCccccCCcccccCceEEEEeCccc--cCCCcCCHHHHHHHHHHCC
Confidence 9999985421 11124579999999974 3456689999999988753
No 15
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=98.75 E-value=8.5e-08 Score=98.65 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=103.4
Q ss_pred CCCCCCCccc-ccccccccccccCceEEEEcCCeeEEEEEEECCEEEEEeCCCcccccc-CcCCcccCCCCccccCCCce
Q 012588 125 NMQFPGSHPV-SLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQ-MRFPCRNSNEGLGEKTHHFT 202 (460)
Q Consensus 125 ~~~FPGsqPV-Sl~r~nl~~l~~~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~-~~FP~~~~~~~l~~~~~~~T 202 (460)
..+||--.|. |++..--....-..|+|++|.||.|+.++..++.+.+.+|++....++ -.||.... ..+.. .....
T Consensus 72 ~~~fpkv~~mlsL~~~~~~~~~~~~~vvEeKlDG~~v~l~y~~G~v~a~TRg~g~e~iT~n~i~~wip-~~L~~-~~~~l 149 (389)
T 2vug_A 72 IPGFPHIKRIINLRSGIRRIFKRGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFICPFTTERIPDFVP-QEFFK-DNPNL 149 (389)
T ss_dssp ECCCCCCEEESSSHHHHHHHSSSCEEEEEEECCSEEEEEEEETTEEEEEETTSCBCHHHHHHGGGTSC-THHHH-HCTTE
T ss_pred ccCCCCcccccCchhhhhhhccCCeEEEEEeecCcEEEEEEECCEEEEEeCCCCCCCCchhhhhHhHH-HHHhc-CCCcE
Confidence 3678865443 444431111113579999999999999988888889999998641121 14454211 01110 13568
Q ss_pred eeeeEEEEecCC----C--CCcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCC
Q 012588 203 LLDGEMIIDKLP----D--SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLE 276 (460)
Q Consensus 203 lLDGElV~d~~~----~--~~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~ 276 (460)
+||||++.-..+ + ....++.|++||++..++.. -.|+.+|++.|++.-+.. .|.
T Consensus 150 ~L~GEvv~~~~~f~~~n~~np~r~l~F~vFDV~~~~~g~--~~s~~er~~~L~~lG~~~------------vp~------ 209 (389)
T 2vug_A 150 ILVGEMAGPESPYLVEGPPYVKEDIQFFLFDVQEIKTGR--SLPVEERLKIAEEYGINH------------VEV------ 209 (389)
T ss_dssp EEEEEEESSSCSSCSCCCTTCCSSCEEEEEEEEETTTCC--BCCHHHHHHHHHHHTCCB------------CCE------
T ss_pred EEEEEEEecCChHHHhcccCcccCCEEEEEEeeccCCCC--cCCHHHHHHHHHHcCCCC------------CCe------
Confidence 999999875421 1 01246899999998876332 278999999999853321 111
Q ss_pred CeEEEeccceechhHHHHHHHhccccCCCCceEEEEcCCCCCccCCCCCeEEEcc
Q 012588 277 PFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKY 331 (460)
Q Consensus 277 pf~I~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~spY~~G~~~~~LKWKP 331 (460)
+.....-.+..+.++++.+. .++.||||++..+ .. .++||+-
T Consensus 210 ---~~~~~~~~~eel~~~i~~~~---~~~~EGvViK~~d------~~-~~lkyt~ 251 (389)
T 2vug_A 210 ---FGKYTKDDVDELYQLIERLS---KEGREGIIMKSPD------MK-KIVKYVT 251 (389)
T ss_dssp ---EEEEEGGGHHHHHHHHHHHH---HTTCCEEEEECTT------SC-CEEEEEC
T ss_pred ---EEEEcCCCHHHHHHHHHHhc---CCCCCeEEEEECC------hh-hhcCcee
Confidence 11111112244555665433 7899999999976 12 4666653
No 16
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=98.70 E-value=4e-07 Score=85.17 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=112.4
Q ss_pred CceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCCCcccc--CCCceeeeeEEEEecCCCCCcceeEEE
Q 012588 147 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEK--THHFTLLDGEMIIDKLPDSRRQERRYL 224 (460)
Q Consensus 147 ~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~l~~~--~~~~TlLDGElV~d~~~~~~~~~~ryl 224 (460)
.+|+|-+-.-|.|+|+....+.+-+.+|++.. -.+||..-. .|-... ...-||||+-...+ .-+|+
T Consensus 21 ~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~---~~~F~S~LP-gG~~~~~~~~~~tILDCI~~e~--------~~tyY 88 (204)
T 1xk5_A 21 QEWIVVVCPVGKRALIVASRGSTSAYTKSGYC---VNRFSSLLP-GGNRRNSTAKDYTILDCIYNEV--------NQTYY 88 (204)
T ss_dssp HHEEEEEEESSEEEEEEEETTEEEEECTTSCE---EEEECCSSS-SSCSSSCCTTCCEEEEEEEEGG--------GTEEE
T ss_pred CCeEEEECCCCcEEEEEecCCeEEEECCCCcE---EEEEcccCC-CCCcccCCCCCCEEEEEEEecC--------CcEEE
Confidence 48988899999999999999988888998852 123443211 010001 23569999977633 24799
Q ss_pred EeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHHHHhccccCC
Q 012588 225 IYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSH 304 (460)
Q Consensus 225 iFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~~~~l~h 304 (460)
|.|+|+++|.++.++...=|.--|+.-+.+... ... . ....++.+..-++++.+. +.|-+-+......
T Consensus 89 VLDvl~W~g~~l~dcetefRffWl~skl~E~~~--l~~----~-----s~~n~~~f~~lp~~~c~~-~~l~~~~~~~~~~ 156 (204)
T 1xk5_A 89 VLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEG--LGE----K-----TKLNPFKFVGLKNFPCTP-ESLCDVLSMDFPF 156 (204)
T ss_dssp EEEEEEETTEECTTSCHHHHHHHHHHHTTTSTT--TTS----C-----BTTBSSEEEECCEEECSH-HHHHHHHTCCCSS
T ss_pred EEEEEEECCceeecCcHHHHHHHHHHHhccccc--ccc----c-----cccCCcceEecccccCCH-HHHHHHHccCCCC
Confidence 999999999999999999999999887654210 100 0 123566777778887763 2233333345678
Q ss_pred CCceEEEEcCCCCCccCCCCCeEEEccC
Q 012588 305 DADGLVFQGWDDPYVPRTHEGLLKWKYA 332 (460)
Q Consensus 305 ~~DGLIF~p~~spY~~G~~~~~LKWKP~ 332 (460)
+.|||+|-.+++-|.+|+++-+.=+||-
T Consensus 157 ~~DGlLFyHK~a~Y~~G~TPLv~WLkp~ 184 (204)
T 1xk5_A 157 EVDGLLFYHKQTHYSPGSTPLVGWLRPY 184 (204)
T ss_dssp CEEEEEEEESSCCCCSEEEEEEEEECGG
T ss_pred CcceEEEEeccccccCCCCChhhhcchh
Confidence 9999999999999999987654433553
No 17
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A
Probab=98.67 E-value=1.6e-08 Score=97.68 Aligned_cols=62 Identities=37% Similarity=0.745 Sum_probs=55.9
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHHHhccCCCCCCCCCCCCccccccc
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELD 63 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~~y~~~~~~~~~~p~~p~w~~~~~ 63 (460)
|||+||+++.+|++++|++.|.++||++|.+..|++.||.+|.+... .+.+|+.|+|+.+.+
T Consensus 158 ~ia~yLm~~~~~s~~eAi~~vr~~R~~~i~~~~~l~~L~~~~~~~~~-~~~~~~~p~W~~~~~ 219 (241)
T 2c46_A 158 LICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIEE-APPPPLLPDWCFEDD 219 (241)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHSCGGG-CCCCCCCCTTCCCCT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhhccc-CCCCCCccchhccCC
Confidence 58999999999999999999999999999999999999999997543 578999999987443
No 18
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=98.53 E-value=1.6e-06 Score=86.81 Aligned_cols=161 Identities=15% Similarity=0.170 Sum_probs=111.1
Q ss_pred CceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCCCcc-cc-CCCceeeeeEEEEecCCCCCcceeEEE
Q 012588 147 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLG-EK-THHFTLLDGEMIIDKLPDSRRQERRYL 224 (460)
Q Consensus 147 ~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~l~-~~-~~~~TlLDGElV~d~~~~~~~~~~ryl 224 (460)
.+|+|-.=.-|.|+|+....+.+-.++|++.. + .+||..-. .|-. .. ....||||.-..-. .-+|+
T Consensus 122 ~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~--l-~~F~S~LP-GG~~~~s~~~~~TILDCIy~e~--------~~tyY 189 (365)
T 3gjx_B 122 QEWIVVVCPVGKRALIVASRGSTSAYTKSGYC--V-NRFSSLLP-GGNRRNSTAKDYTILDCIYNEV--------NQTYY 189 (365)
T ss_dssp HHEEEEEEESSEEEEEEEETTEEEEECTTCCE--E-EEECCSST-TTCC----CCCCEEEEEEEETT--------TTEEE
T ss_pred cCeeEEeccCCcEEEEEecCceEEEECCCCCE--E-eeeCCCCC-CCCccccCCCCCEEEEEEeecC--------CceEE
Confidence 37888888889999999998888888998852 1 24543211 0100 00 13579999976632 23799
Q ss_pred EeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCCccCCCCCeEEEeccceechhHHHHHHHhccccCC
Q 012588 225 IYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSH 304 (460)
Q Consensus 225 iFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~~~~l~h 304 (460)
|.|||+|+|.++.++...-|.--|..-+.+.. .+ .. . ....||.+..-+.++.+. +.|-..+....++
T Consensus 190 VLDVL~W~g~~l~dCeteFRffWl~SKL~E~~--~l---~e-~-----s~~np~~Fv~lp~~~C~~-esL~~~ls~~~pf 257 (365)
T 3gjx_B 190 VLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEE--GL---GE-K-----TKLNPFKFVGLKNFPCTP-ESLCDVLSMDFPF 257 (365)
T ss_dssp EEEEEEETTEECTTSCHHHHHHHHHHHGGGST--TT---TS-C-----CSSCCSEEEECCEEECCH-HHHHHHTTCCCSS
T ss_pred EEEEeeeCCcccccCchHHHHHHHHHHhhhcc--cc---cc-c-----ccCCCCceeccCCCCcCH-HHHHHHhccCCCC
Confidence 99999999999999999999999988765421 01 00 1 123567777777777654 3344444456788
Q ss_pred CCceEEEEcCCCCCccCCCCCeEEEcc
Q 012588 305 DADGLVFQGWDDPYVPRTHEGLLKWKY 331 (460)
Q Consensus 305 ~~DGLIF~p~~spY~~G~~~~~LKWKP 331 (460)
+.|||+|-...+-|.+|.++-+.=+||
T Consensus 258 e~DGLLFYHK~ahY~~G~TPLVgWLkP 284 (365)
T 3gjx_B 258 EVDGLLFYHKQTHYSPGSTPLVGWLRP 284 (365)
T ss_dssp CEEEEEEEETTCCCCSEEEEEEEEECH
T ss_pred ccceEEEEeccccccCCCCccceecch
Confidence 999999999999999998764443354
No 19
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=96.36 E-value=0.019 Score=55.26 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=66.3
Q ss_pred cccCceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCC-------CccccC----CCceeeeeEEEEec
Q 012588 144 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNE-------GLGEKT----HHFTLLDGEMIIDK 212 (460)
Q Consensus 144 l~~~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~-------~l~~~~----~~~TlLDGElV~d~ 212 (460)
|....+.|+||.||+-+-+++.++++.+.+|+..+..-+-.++-..... .+.+.. ..+.+|=||++--+
T Consensus 25 ~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~~ 104 (249)
T 1s68_A 25 LTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPG 104 (249)
T ss_dssp CSCSCEEEEECCCSEEEEEEEESSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESTT
T ss_pred cCCCCEEEEEEECCcceEEEEECCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEcccc
Confidence 5556899999999999999988888999999875421111111100000 010111 14677889999532
Q ss_pred CCCC-CcceeEEEEeeee-ecCCccccCCCHHHHHHHHHHH
Q 012588 213 LPDS-RRQERRYLIYDMM-AINQASVIERPFYERWKMLEKE 251 (460)
Q Consensus 213 ~~~~-~~~~~ryliFDiL-~~~G~~l~~~pf~eRl~~L~~~ 251 (460)
.... .-....|++|||. ..++.+..-+++.+|.++++..
T Consensus 105 Iq~~v~Y~~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 105 IQKNVDYCDKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp TSSSCCCCSCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred ccCCcccCCCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 1111 0013589999997 4343334567899999998874
No 20
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=96.29 E-value=0.026 Score=56.70 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=67.9
Q ss_pred ccccCceEEEEcCCeeEEEEEEECCEEEEEeCCCccccccCcCCcccCCC-------CccccC----CCceeeeeEEEEe
Q 012588 143 LLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNE-------GLGEKT----HHFTLLDGEMIID 211 (460)
Q Consensus 143 ~l~~~~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~-------~l~~~~----~~~TlLDGElV~d 211 (460)
.|....++|+||.||+-+-+++.++++.+.+|+..+..-.-.|+...... .+.+.. ..+.+|=||++--
T Consensus 25 ~l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~ 104 (335)
T 2hvq_A 25 GLTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 104 (335)
T ss_dssp TCSCSCEEEEECCSSEEEEEEEETTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESB
T ss_pred ccCCCcEEEEEEecCcceEEEEECCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccC
Confidence 45566899999999999999999899999999876421111111110000 111111 1467789999943
Q ss_pred cCCCC-CcceeEEEEeeee-ecCCccccCCCHHHHHHHHHHHh
Q 012588 212 KLPDS-RRQERRYLIYDMM-AINQASVIERPFYERWKMLEKEV 252 (460)
Q Consensus 212 ~~~~~-~~~~~ryliFDiL-~~~G~~l~~~pf~eRl~~L~~~i 252 (460)
+...+ .-....|++|||. ..++..-.-+|+.+|.++++..-
T Consensus 105 ~Iq~~i~Y~~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~g 147 (335)
T 2hvq_A 105 GIQKNVDYGDKDFYVFDIIVTTESGDVTYVDDYMMESFCNTFK 147 (335)
T ss_dssp TTBSSCCCCSSEEEEEEEEEEETTCCEEECCHHHHHHHHHHHT
T ss_pred cccCCcccCCCeEEEEEEEEecCCCceeeCCHHHHHHHHHHcC
Confidence 21111 0013489999997 43433344589999999998853
No 21
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=96.08 E-value=0.059 Score=53.93 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=91.7
Q ss_pred ceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--cccCcCCcccC-CCCccccCCCceeeeeEEEEecC----------
Q 012588 148 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKL---------- 213 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~l~~~~~~~TlLDGElV~d~~---------- 213 (460)
.|++++|.||..+-|...++. +..++|.+-.. .|+.......+ +..+. ......+-||+++.+.
T Consensus 114 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~--~p~~leVRGEv~m~~~~F~~lN~~~~ 191 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLT--EPISVEVRGECYMPKQSFVALNEERE 191 (332)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSBCS--SCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred eEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcCCccccC--CCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 699999999999988877666 68999964321 23222211111 11121 1233789999998531
Q ss_pred --CCC---------------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCC
Q 012588 214 --PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 270 (460)
Q Consensus 214 --~~~---------------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~ 270 (460)
+.. .+..+.|++|++...+|... ....+++..|+++-+.. ++.
T Consensus 192 ~~g~~~faNPRNaAAGsLrqld~~ita~R~L~ff~y~i~~~~~~~~--~t~~e~l~~L~~~GF~v------------~~~ 257 (332)
T 1ta8_A 192 ENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKA--KTQFEALEELSAIGFRT------------NPE 257 (332)
T ss_dssp HTTCCCCSSHHHHHHHHHTCSBHHHHHTSCCEEEEEEESCCTTCCC--SBHHHHHHHHHHTTCCC------------CTT
T ss_pred hcCCccccChHHHHHHHHHccChhhHhhCCCEEEEEecccccCCCC--CCHHHHHHHHHHcCCCC------------CCc
Confidence 110 02368999999954434322 56889999998854421 111
Q ss_pred ccCCCCCeEEEeccceechhHHHHHHHh---ccccCCCCceEEEEcCCCCCc------cCCCCCeEEEccCC
Q 012588 271 YRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPYV------PRTHEGLLKWKYAR 333 (460)
Q Consensus 271 ~~~~~~pf~I~~K~f~~~~~~~~ll~~~---~~~l~h~~DGLIF~p~~spY~------~G~~~~~LKWKP~~ 333 (460)
. .+ +-.+..+...++.+ ...++++.||||++-.+.++. ......-+=||+|.
T Consensus 258 ~-------~~----~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpa 318 (332)
T 1ta8_A 258 R-------QL----CQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPP 318 (332)
T ss_dssp C-------EE----ESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC-
T ss_pred c-------eE----eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCC
Confidence 0 01 11222333333322 467899999999997665543 22234556677663
No 22
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=95.87 E-value=0.078 Score=52.77 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=90.5
Q ss_pred ceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--cccCcCCcccC-CCCccccCCCceeeeeEEEEecC----------
Q 012588 148 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKL---------- 213 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~l~~~~~~~TlLDGElV~d~~---------- 213 (460)
.|++++|.||..+-|...++. +..++|.+-.. .|+.......+ +..+. ......+-||+++.+.
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~--~p~~levRGEv~m~~~~F~~lN~~~~ 185 (318)
T 1b04_A 108 AYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLK--EPVSLEARGEAFMPKASFLRLNEERK 185 (318)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTSCSBCS--SCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred eEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCCCcccC--CCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 699999999999988777664 67899964321 22221111111 11121 1233789999998531
Q ss_pred --CC-----C----------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCC
Q 012588 214 --PD-----S----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 270 (460)
Q Consensus 214 --~~-----~----------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~ 270 (460)
+. + .+..+.|++|++...+|.. -.+..+++..|+.+-+.. ++.
T Consensus 186 ~~g~~~faNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v------------~~~ 251 (318)
T 1b04_A 186 ARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKV------------NPE 251 (318)
T ss_dssp HC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCC------------CTT
T ss_pred HcCCCccchhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCC------------CCc
Confidence 10 0 0236899999995433422 257889999998854421 111
Q ss_pred ccCCCCCeEEEeccceechhHHHHHHHh---ccccCCCCceEEEEcCCCCCc------cCCCCCeEEEccCC
Q 012588 271 YRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPYV------PRTHEGLLKWKYAR 333 (460)
Q Consensus 271 ~~~~~~pf~I~~K~f~~~~~~~~ll~~~---~~~l~h~~DGLIF~p~~spY~------~G~~~~~LKWKP~~ 333 (460)
. .+ .+ .+..+.+.++.+ ...++++.||||++-.+.++. ......-+=||+|.
T Consensus 252 ~-------~~-~~---~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpa 312 (318)
T 1b04_A 252 R-------RR-CA---NIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPA 312 (318)
T ss_dssp C-------EE-ES---SHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEECCC
T ss_pred c-------eE-eC---CHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeeecCCc
Confidence 0 01 11 122333333322 467899999999997655443 33334556666654
No 23
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=94.86 E-value=0.71 Score=45.57 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=87.8
Q ss_pred CceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--cccCcCCcccC-CCCccccCCCceeeeeEEEEecC---------
Q 012588 147 RYYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKL--------- 213 (460)
Q Consensus 147 ~~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~l~~~~~~~TlLDGElV~d~~--------- 213 (460)
..|++++|.||.=+.|...++. +..++|.+-.. .++.......+ +..+ .......+=||+++.+.
T Consensus 102 ~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~IP~~l--~~~~~levRGEv~m~~~~F~~~n~~~ 179 (305)
T 4glw_A 102 PTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTL--PEELDITVRGECYMPRASFDQVNQAR 179 (305)
T ss_dssp CCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTTSCSBC--SSCCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccCCcccC--CCcccccccceEEeehhhHHHHHHHH
Confidence 3699999999999877776665 68899985321 22211100000 0111 11234678999997431
Q ss_pred ---CCC---------------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCC
Q 012588 214 ---PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNP 269 (460)
Q Consensus 214 ---~~~---------------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~ 269 (460)
+.. ....+.|++|++...+|. ....+++..|+++-.. .++
T Consensus 180 ~~~g~~~faNpRNaaAGslrq~d~~~~~~r~L~f~~y~~~~~~~~----~s~~e~l~~L~~~Gf~------------~~~ 243 (305)
T 4glw_A 180 QENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTR----DSQEKGLKYLEQLGFV------------VNP 243 (305)
T ss_dssp HHTTCCCCSSHHHHHHHHHSSSBHHHHHHSCCEEEEEEESSSCSS----SBHHHHHHHHHHHTCC------------CCC
T ss_pred HhcCCccchhhhHHHhhhhhccCchhhhhhcceEEEeeecccccc----chHHHHHHHHHhCCCc------------cCC
Confidence 110 013588999998766553 3567889998875432 111
Q ss_pred CccCCCCCeEEEeccceechhHHHHHHH---hccccCCCCceEEEEcCCCC------CccCCCCCeEEEccC
Q 012588 270 YYRYDLEPFRVRRKDFWLLSTVNKLLKE---FIPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYA 332 (460)
Q Consensus 270 ~~~~~~~pf~I~~K~f~~~~~~~~ll~~---~~~~l~h~~DGLIF~p~~sp------Y~~G~~~~~LKWKP~ 332 (460)
.. ...+ .+..+.+.++. .-..++++.||||++-.+-+ |+.+....-+=||+|
T Consensus 244 ~~--------~~~~---~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn~~~~q~~lG~tsk~PrWAiA~Kfp 304 (305)
T 4glw_A 244 KR--------ILAE---NIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFP 304 (305)
T ss_dssp CC--------EEES---SHHHHHHHHHHHHHHGGGSSSCEEEEEEEECBHHHHHHHCBCSSSBSSEEEEECC
T ss_pred ce--------EEeC---CHHHHHHHHHHHHHHhhcCCCCCCeEEEEEeCHHHHHHcCCcCCCCCceEEeCcc
Confidence 10 1111 12233333322 23578999999999853322 333334456777765
No 24
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=94.59 E-value=1.3 Score=47.52 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=96.2
Q ss_pred CceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--ccc---CcC---CcccCCCCccccCCCceeeeeEEEEecC----
Q 012588 147 RYYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ---MRF---PCRNSNEGLGEKTHHFTLLDGEMIIDKL---- 213 (460)
Q Consensus 147 ~~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~---~~F---P~~~~~~~l~~~~~~~TlLDGElV~d~~---- 213 (460)
-.|++++|.||.=+.|...++. +..++|.+-.. .++ .+. |..-. + ........+=||++..+.
T Consensus 108 ~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~IPl~l~--~--~~~p~~leVRGEv~m~~~~F~~ 183 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH--G--ENIPARLEVRGEVFLPQAGFEK 183 (586)
T ss_dssp -CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSBCC--S--SSCCSEEEEEEEEECCHHHHHH
T ss_pred ceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccCcccccc--c--CCCCceEEEEEEEEEEhhhccc
Confidence 3699999999999877777665 68999975421 222 111 22110 0 011234567899997431
Q ss_pred --------CCC---------------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhcccc
Q 012588 214 --------PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIY 264 (460)
Q Consensus 214 --------~~~---------------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~ 264 (460)
++. ....+.|++|++..++|.++. ....+++..|+++-+.
T Consensus 184 ln~~~~~~g~~~faNpRNaaAGslrqld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~---------- 252 (586)
T 4glx_A 184 INEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLP---------- 252 (586)
T ss_dssp HHHHHHHTTCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCC----------
T ss_pred cchhhhhccCccchhhHHHHhccccccchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCC----------
Confidence 110 023589999999988876543 3467889888875332
Q ss_pred ccCCCCccCCCCCeEEEeccceechhHHHHHH---HhccccCCCCceEEEEcCCCC------CccCCCCCeEEEccCCCc
Q 012588 265 QSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLK---EFIPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARMN 335 (460)
Q Consensus 265 ~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~---~~~~~l~h~~DGLIF~p~~sp------Y~~G~~~~~LKWKP~~~n 335 (460)
.++.+ .+ .+ .+..+.+.++ .....++++.||||++-.+-+ |+.+....-+=||+|...
T Consensus 253 --v~~~~-------~~-~~---~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e~ 319 (586)
T 4glx_A 253 --VSDRV-------TL-CE---SAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQE 319 (586)
T ss_dssp --CCTTC-------EE-ES---SHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCCE
T ss_pred --Cccce-------ee-ec---cHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccchh
Confidence 11111 11 11 1222222222 234578999999999864322 334444567888887655
Q ss_pred eEEEEEEE
Q 012588 336 SVDFLFEV 343 (460)
Q Consensus 336 TVDF~l~~ 343 (460)
-.--+..+
T Consensus 320 ~~T~v~~I 327 (586)
T 4glx_A 320 QMTFVRDV 327 (586)
T ss_dssp EEEEEEEE
T ss_pred heeEeEEE
Confidence 44444333
No 25
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=94.02 E-value=0.033 Score=50.20 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=43.7
Q ss_pred chhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHH--HhccCCCCCCCCCCCCcccc
Q 012588 2 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYT--FYHEKRLDSTPCPSTPEWKR 60 (460)
Q Consensus 2 i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~--~y~~~~~~~~~~p~~p~w~~ 60 (460)
+++||+...||+.++|++.+..+||.-.-...|+..|.. ...... ..+....|.|..
T Consensus 105 v~ayLm~~~~~~~~~A~~~v~~~Rp~~~pn~~f~~qL~~~e~~l~~~--~~~~~~~p~~~~ 163 (177)
T 2oud_A 105 VIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQLLEFEEDLNNG--VTPRILTPKLMG 163 (177)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHT--SSCCCCCTTSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHHHHHHhcC--CCCcccCcchhH
Confidence 578999999999999999999999987788888888743 333222 235566677764
No 26
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A
Probab=93.27 E-value=0.056 Score=54.44 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=37.9
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcc--hhHHHHHHHHHh
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIY--KNEYIEALYTFY 42 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~--~~~y~~~l~~~y 42 (460)
++++||+...||++++|++.+..+||++|. .+.|+.+|....
T Consensus 286 vvaayLm~~~g~s~~eAl~~vr~~Rp~~i~~pnq~Fl~qL~~~~ 329 (348)
T 1ohe_A 286 LIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLVMKQTNL 329 (348)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHSTTCSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 478999999999999999999999999998 788999987654
No 27
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=93.08 E-value=2 Score=42.63 Aligned_cols=159 Identities=15% Similarity=0.151 Sum_probs=89.2
Q ss_pred ceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--cccCcCCcccC-CCCccccCCCceeeeeEEEEecC----------
Q 012588 148 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKL---------- 213 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~l~~~~~~~TlLDGElV~d~~---------- 213 (460)
.|++++|.||.=+-|...++. +..++|.+-.. .|+.......+ +..+ .......+=||+++.+.
T Consensus 106 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L--~~~~~levRGEv~m~~~~F~~lN~~~~ 183 (318)
T 3jsl_A 106 EYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKM--KEPLNVEVRGEAYMPRRSFLRLNEEKE 183 (318)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSBC--SSCCCEEEEEEEECCHHHHHHHHHHHB
T ss_pred eEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcCCcccc--CCCCcEEEEEEEEEcHHHHHHHHHHHH
Confidence 799999999999977776654 57999965321 22211100000 0011 01124678999998421
Q ss_pred --CCC---------------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccccCCCC
Q 012588 214 --PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 270 (460)
Q Consensus 214 --~~~---------------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~~~ 270 (460)
+.. .+..+.|++|.+...+|... ....+++..|+++-+.- ++.
T Consensus 184 ~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~--~t~~e~l~~L~~~GF~v------------~~~ 249 (318)
T 3jsl_A 184 KNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNA--RSQSEALDELDKLGFTT------------NKN 249 (318)
T ss_dssp TTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCCC--SBHHHHHHHHHHHTCCC------------CTT
T ss_pred HhCCccccChHHHHHHHHHccChhhhhhCcceEEEEecccccCCCC--CCHHHHHHHHHHCCCCc------------CCc
Confidence 100 02358999999987665432 46789999998864321 111
Q ss_pred ccCCCCCeEEEeccceechhHHHHHHH---hccccCCCCceEEEEcCCCC------CccCCCCCeEEEccCC
Q 012588 271 YRYDLEPFRVRRKDFWLLSTVNKLLKE---FIPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYAR 333 (460)
Q Consensus 271 ~~~~~~pf~I~~K~f~~~~~~~~ll~~---~~~~l~h~~DGLIF~p~~sp------Y~~G~~~~~LKWKP~~ 333 (460)
. -..+ .+..+...++. ....+++..||+|++=.+-. |+......-+=||+|.
T Consensus 250 ~--------~~~~---~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKfp~ 310 (318)
T 3jsl_A 250 R--------ARVN---NIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPA 310 (318)
T ss_dssp C--------EEES---SHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC-
T ss_pred c--------eEeC---CHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHHHhCCCCCCCCceEEECCCC
Confidence 0 1111 22333333332 34679999999999965443 3333234556666553
No 28
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=93.08 E-value=0.081 Score=46.71 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=33.9
Q ss_pred chhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHH
Q 012588 2 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEAL 38 (460)
Q Consensus 2 i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l 38 (460)
+++||+...||++++|++.+.++||.-+-...|+..|
T Consensus 107 ~~ayLm~~~~~~~~~A~~~v~~~R~~~~pn~~f~~qL 143 (164)
T 2hcm_A 107 CTAYLMRHRGHSLDRAFQMVKSARPVAEPNLGFWAQL 143 (164)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHCTTCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHCCCcCCCHHHHHHH
Confidence 5799999999999999999999999878888888887
No 29
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=92.52 E-value=1.9 Score=42.91 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=90.0
Q ss_pred ceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--ccc--C----cCCcccCCCCccccCCCceeeeeEEEEecC-----
Q 012588 148 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M----RFPCRNSNEGLGEKTHHFTLLDGEMIIDKL----- 213 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~--~----~FP~~~~~~~l~~~~~~~TlLDGElV~d~~----- 213 (460)
.|++++|.||.=+-|...++. +..++|.+-.. .|+ + .-|..-. + ........+=||+++.+.
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IPl~L~--~--~~~p~~leVRGEv~m~~~~F~~l 183 (322)
T 3uq8_A 108 TFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLL--T--DNPPARLEVRGEVFMPHAGFERL 183 (322)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTTSCSBCS--C--SSCCSEEEEEEEEECCHHHHHHH
T ss_pred eEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcCCCcccc--C--CCCCceEEEEEEEEeeHHHHHHH
Confidence 699999999999877776654 67999965321 222 1 1122110 0 001234678899997531
Q ss_pred -------CCC---------------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccc
Q 012588 214 -------PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQ 265 (460)
Q Consensus 214 -------~~~---------------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~ 265 (460)
+.. .+..+.|++|.+...+|... .....+++..|+++-..
T Consensus 184 N~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~----------- 251 (322)
T 3uq8_A 184 NKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIP----------- 251 (322)
T ss_dssp HHHHHHTTCCCCSSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCC-----------
T ss_pred HHHHHHhCCccccchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCC-----------
Confidence 110 12358999999977666432 24678999999875432
Q ss_pred cCCCCccCCCCCeEEEeccceechhHHHHHHH---hccccCCCCceEEEEcCCCCC------ccCCCCCeEEEccCC
Q 012588 266 SRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKE---FIPKLSHDADGLVFQGWDDPY------VPRTHEGLLKWKYAR 333 (460)
Q Consensus 266 ~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~---~~~~l~h~~DGLIF~p~~spY------~~G~~~~~LKWKP~~ 333 (460)
.++. ... +-.+..+...++. ....+++..||+|++-.+-++ +......-+=||+|.
T Consensus 252 -v~~~--------~~~---~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpa 316 (322)
T 3uq8_A 252 -VNPE--------IRL---CNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPA 316 (322)
T ss_dssp -CCTT--------CEE---EESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESBHHHHHHHCEETTEETTEEEEECCC
T ss_pred -CCCC--------cEE---eCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCHHHHHHcCccCCCCCceEEEcCCc
Confidence 1111 011 1122333333332 345789999999999654433 222234566677664
No 30
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=91.03 E-value=0.15 Score=50.83 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=81.3
Q ss_pred CceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--cccCcCCcccC-CCCc-c-c--cCCCceeeeeEEEEecC-----
Q 012588 147 RYYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGL-G-E--KTHHFTLLDGEMIIDKL----- 213 (460)
Q Consensus 147 ~~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~l-~-~--~~~~~TlLDGElV~d~~----- 213 (460)
-.|++++|.||.-+-|...++. +..++|.+-.. .|+.......+ +..+ . . .......+-||+++.+.
T Consensus 116 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~~g~~~~~p~~leVRGEv~m~~~~F~~l 195 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 (328)
T ss_dssp SCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSSCCSBCCCBTTBCCCSCCEEEEEEBCCHHHHHHH
T ss_pred cceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcCCChhhccCCcCCCCCeEEEEEEEEEEHHHHHHH
Confidence 3799999999999977665443 57889954311 22211111111 0001 0 0 01233689999997531
Q ss_pred -------CCC---------------------CcceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccc
Q 012588 214 -------PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQ 265 (460)
Q Consensus 214 -------~~~---------------------~~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~ 265 (460)
+.. .+..+.|++|++..+++... ....+++..|+++-+..
T Consensus 196 N~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~f~~y~i~~~~~~~~--~t~~e~l~~L~~~Gf~v---------- 263 (328)
T 1zau_A 196 NASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRP--ATLHQAYLALRAWGLPV---------- 263 (328)
T ss_dssp HHSCSSTTSCCCSSHHHHHHHHHTCSSHHHHHHSCCBCCCCBCCCCSSCCC--SBHHHHHHHHHTTTCCC----------
T ss_pred HHHHHHcCCccccChHHHHHHHHHccChhhhhcCcceEEEEeccccCCCCC--CCHHHHHHHHHHcCCCC----------
Confidence 110 01358999999965554322 46788998888754321
Q ss_pred cCCCCccCCCCCeEEEeccceechhHHHHHHHh---ccccCCCCceEEEEcCCCCC
Q 012588 266 SRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPY 318 (460)
Q Consensus 266 ~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~---~~~l~h~~DGLIF~p~~spY 318 (460)
++.. +-+-.+..+.+.++.+ ...++++.||||++-.+..+
T Consensus 264 --~~~~-----------~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~ 306 (328)
T 1zau_A 264 --SEHT-----------TLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVAL 306 (328)
T ss_dssp --CCCC-----------CCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHH
T ss_pred --CCce-----------EEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHH
Confidence 1110 0111233344444433 45788999999999755444
No 31
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=90.95 E-value=0.2 Score=43.27 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=36.6
Q ss_pred chhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHHHh
Q 012588 2 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFY 42 (460)
Q Consensus 2 i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~~y 42 (460)
+++||+...||++++|++.+..+||.-.-...|+..|....
T Consensus 101 ~~ayl~~~~~~~~~~a~~~v~~~R~~~~pn~~f~~qL~~~e 141 (149)
T 1zzw_A 101 VIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQLLEFE 141 (149)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHHH
Confidence 57899999999999999999999998888999999886544
No 32
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=90.11 E-value=0.24 Score=43.32 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=36.7
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHHHhc
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 43 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~~y~ 43 (460)
++++||+...+|++++|++.+..+||.-.-...|+..|.....
T Consensus 102 vv~ayLm~~~~~~~~~A~~~v~~~R~~~~pn~~f~~qL~~~e~ 144 (155)
T 2hxp_A 102 VTVAYLMQKLHLSLNDAYDLVKRKKSNISPNFNFMGQLLDFER 144 (155)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 3679999999999999999999999976668899999865543
No 33
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=89.09 E-value=0.3 Score=45.58 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=35.5
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHHH
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTF 41 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~~ 41 (460)
++++||+...+|++++|++.+.++||.-.-...|+..|...
T Consensus 100 vv~AYLm~~~g~s~~eAl~~vr~~Rp~i~pN~~f~~qL~~~ 140 (211)
T 2g6z_A 100 ICMAYLMKTKQFRLKEAFDYIKQRRSMVSPNFGFMGQLLQY 140 (211)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHH
Confidence 36899999999999999999999999777788888887443
No 34
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=88.35 E-value=9.8 Score=41.43 Aligned_cols=166 Identities=15% Similarity=0.166 Sum_probs=94.6
Q ss_pred ceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--cccC---c---CCcccCCCCccc-cCCCceeeeeEEEEecC----
Q 012588 148 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQM---R---FPCRNSNEGLGE-KTHHFTLLDGEMIIDKL---- 213 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~~---~---FP~~~~~~~l~~-~~~~~TlLDGElV~d~~---- 213 (460)
.|++++|.||.=+-|.+.++. +...+|.+-.. .++. + -|.. +.. .......+=||++..+.
T Consensus 109 ~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~IP~~-----l~~~~~p~~levRGEv~m~~~~F~~ 183 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLK-----LHGENIPARLEVRGEVFLPQAGFEK 183 (671)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTTSCSB-----CCSSSCCSEEEEEEEEECCHHHHHH
T ss_pred eEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcCCCcc-----ccCCCCCCeEEEEEEEEEEHHHHHH
Confidence 799999999999977777654 57899975321 1221 1 1221 100 01223678999998531
Q ss_pred --------CCC---------------------CcceeEEEEeeeeecCC-ccccCCCHHHHHHHHHHHhcCccchhhccc
Q 012588 214 --------PDS---------------------RRQERRYLIYDMMAINQ-ASVIERPFYERWKMLEKEVIEPRNYERHNI 263 (460)
Q Consensus 214 --------~~~---------------------~~~~~ryliFDiL~~~G-~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l 263 (460)
+.. .+..+.|++|++...+| .+. ....++++.|+++-+..
T Consensus 184 lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~R~L~~~~y~~~~~~~~~~~--~t~~e~l~~L~~~Gf~v-------- 253 (671)
T 2owo_A 184 INEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP--DTHLGRLLQFKKWGLPV-------- 253 (671)
T ss_dssp HHHHHHHSSCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCC--SBHHHHHHHHHHHTCCC--------
T ss_pred HHHHHHhcCCCcccChHHHHHHHHHhcChhhHhcCCCEEEEEECcccCCCCCC--CCHHHHHHHHHHCCCCC--------
Confidence 110 02468999999965554 222 46788999998865431
Q ss_pred cccCCCCccCCCCCeEEEeccceechhHHHHHH---HhccccCCCCceEEEEcCCCC------CccCCCCCeEEEccCCC
Q 012588 264 YQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLK---EFIPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARM 334 (460)
Q Consensus 264 ~~~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~---~~~~~l~h~~DGLIF~p~~sp------Y~~G~~~~~LKWKP~~~ 334 (460)
++.. -..+ .+..+.+.++ +....++++.||+|++=.+-+ |+......-+=||+|..
T Consensus 254 ----~~~~--------~~~~---~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae 318 (671)
T 2owo_A 254 ----SDRV--------TLCE---SAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQ 318 (671)
T ss_dssp ----CTTC--------EEES---SHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCC
T ss_pred ----CCcc--------eeeC---CHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCc
Confidence 1110 0111 1223333333 234679999999999964443 34333455677777765
Q ss_pred ceEEEEEEE
Q 012588 335 NSVDFLFEV 343 (460)
Q Consensus 335 nTVDF~l~~ 343 (460)
.-.--+..|
T Consensus 319 ~~~T~l~~I 327 (671)
T 2owo_A 319 EQMTFVRDV 327 (671)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 444333333
No 35
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=87.39 E-value=0.49 Score=42.86 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=33.0
Q ss_pred chhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHH
Q 012588 2 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEAL 38 (460)
Q Consensus 2 i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l 38 (460)
+++||+...||++++|++.+.++||.-.-...|+..|
T Consensus 115 v~ayLm~~~~~s~~~A~~~v~~~Rp~~~pn~~f~~qL 151 (188)
T 2esb_A 115 CLAYLMKYHAMSLLDAHTWTKSCRPIIRPNSGFWEQL 151 (188)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHCTTCCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHH
Confidence 6799999999999999999999999766677887777
No 36
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}
Probab=87.29 E-value=0.47 Score=43.09 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=33.2
Q ss_pred chhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHH
Q 012588 2 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEAL 38 (460)
Q Consensus 2 i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l 38 (460)
+++||+...+|++++|++.+..+||.-.-...|+..|
T Consensus 121 v~ayLm~~~~~s~~~A~~~v~~~R~~~~pn~~f~~qL 157 (190)
T 2wgp_A 121 CIAYLMKFHNVCLLEAYNWVKARRPVIRPNVGFWRQL 157 (190)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHH
Confidence 5799999999999999999999999766778888777
No 37
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Probab=85.54 E-value=0.61 Score=43.51 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=32.4
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHH
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALY 39 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~ 39 (460)
++++||+...+|++++|++.+.++|| -.-...|+..|.
T Consensus 156 vv~aYLm~~~~~s~~eAl~~vr~~R~-i~pn~~f~~qL~ 193 (219)
T 2y96_A 156 LVLAYLMIHKDMTLVDAIQQVAKNRC-VLPNRGFLKQLR 193 (219)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHTTSC-CCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-CCCCHHHHHHHH
Confidence 47899999999999999999999995 445777888773
No 38
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=85.54 E-value=0.69 Score=40.71 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=33.6
Q ss_pred chhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHHH
Q 012588 2 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTF 41 (460)
Q Consensus 2 i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~~ 41 (460)
+++||+...+|++++|++.+.++||--.-...|+..|...
T Consensus 101 ~~ayLm~~~~~~~~~A~~~v~~~R~~~~pn~~f~~qL~~~ 140 (165)
T 1wrm_A 101 VIAYIMTVTDFGWEDALHTVRAGRSCANPNVGFQRQLQEF 140 (165)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHhHHHHHHHH
Confidence 5899999999999999999999999655577777776443
No 39
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=85.43 E-value=0.71 Score=40.29 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=33.4
Q ss_pred chhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHH
Q 012588 2 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALY 39 (460)
Q Consensus 2 i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~ 39 (460)
+++||+...||++++|++.+..+||.-.-...|++.|.
T Consensus 102 ~~aylm~~~~~~~~~a~~~v~~~R~~~~pn~~f~~qL~ 139 (160)
T 1yz4_A 102 VTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQLE 139 (160)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHH
Confidence 57999999999999999999999997666778888873
No 40
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=84.42 E-value=7.1 Score=37.76 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=61.9
Q ss_pred cccCceEEEEcCCeeEEEEEE--ECCE--EEEEeCCCccccccCcC-------Cccc----CC-CCcc----ccCCCcee
Q 012588 144 LRQRYYYATWKADGTRYMMLI--TIDG--CYLIDRCFNFRRVQMRF-------PCRN----SN-EGLG----EKTHHFTL 203 (460)
Q Consensus 144 l~~~~Y~V~~K~DG~R~Ll~i--~~~~--vyLidR~~~~~~v~~~F-------P~~~----~~-~~l~----~~~~~~Tl 203 (460)
|....|+|+||.||+-+-+++ +++. +..-.|+.-+- .+-.| |... .. +.+. .......+
T Consensus 30 l~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~-~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~ 108 (277)
T 1xdn_A 30 LAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMD-PNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLV 108 (277)
T ss_dssp GGGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECC-TTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEE
T ss_pred CCCCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccC-cccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEE
Confidence 455689999999999998888 6666 78888875321 11111 1000 00 0000 00124567
Q ss_pred eeeEEEEec---------------CCC---------CCc-------ceeEEEEeeeeecCC---ccccCCCHHHHHHHHH
Q 012588 204 LDGEMIIDK---------------LPD---------SRR-------QERRYLIYDMMAINQ---ASVIERPFYERWKMLE 249 (460)
Q Consensus 204 LDGElV~d~---------------~~~---------~~~-------~~~ryliFDiL~~~G---~~l~~~pf~eRl~~L~ 249 (460)
+=||+.--. .+. -++ ....|++|||...++ .+..-++|.+=.+.+.
T Consensus 109 VyGELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~~~IQ~~i~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~~~~ 188 (277)
T 1xdn_A 109 LNGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFVEFSS 188 (277)
T ss_dssp EEEEEEEEECCCTTSCCCCCEEECTTSCEEEGGGCCSCCCSSCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHHHHHH
T ss_pred EEEEEecCccCCccccccccccccCccccCcccccccccccccccCCCceEEEEEEEEecCCCccccccCCHHHHHHHHH
Confidence 889998533 000 011 136899999998752 2445788887666665
Q ss_pred H
Q 012588 250 K 250 (460)
Q Consensus 250 ~ 250 (460)
+
T Consensus 189 ~ 189 (277)
T 1xdn_A 189 K 189 (277)
T ss_dssp T
T ss_pred H
Confidence 5
No 41
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=84.22 E-value=0.88 Score=40.06 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=33.4
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHH
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALY 39 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~ 39 (460)
++++||+...+|++++|++.....||.--=...|+..|-
T Consensus 104 vv~ayLm~~~~~s~~~A~~~v~~~Rp~i~pn~~f~~qL~ 142 (161)
T 3emu_A 104 IVIAFLMYYQRLSFINAFNKVQGLYPLIDIESGFILQLK 142 (161)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHCCCcCCCHHHHHHHH
Confidence 368999999999999999999999997555777877774
No 42
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Probab=82.90 E-value=1 Score=38.81 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=37.3
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHHHhc
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 43 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~~y~ 43 (460)
++++||+...|+++++|++.+...||..+-...+..-|+....
T Consensus 106 ~~~~~l~~~~~~~~~~a~~~~r~~R~~~~~~~~q~~~l~~~~~ 148 (161)
T 2i6j_A 106 ILASYLILTEGLEVESAIDEVRLVRPGAVQTYEQEMFLLRVEG 148 (161)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHSTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcccCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999988888887766543
No 43
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=82.68 E-value=22 Score=38.58 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=89.9
Q ss_pred ceEEEEcCCeeEEEEEEECCEEEEEeCCCccc--cccCcCCcccC-CCCccccCCCceeeeeEEEEecC-----------
Q 012588 148 YYYATWKADGTRYMMLITIDGCYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKL----------- 213 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~vyLidR~~~~~--~v~~~FP~~~~-~~~l~~~~~~~TlLDGElV~d~~----------- 213 (460)
.|++++|.||.=+ |...++. ..++|.+-.. .++.......+ +..+... .....+=||++..+.
T Consensus 110 ~~~~e~KiDGlai-L~Ye~G~-~a~TRGDG~~GedvT~n~rtI~~iP~~l~~~-p~~levRGEv~m~~~~F~~lN~~~~~ 186 (667)
T 1dgs_A 110 LYTVEHKVDGLSV-LYYEEGV-WSTGSGDGEVGEEVTQNLLTIPTIPRRLKGV-PDRLEVRGEVYMPIEAFLRLNEELEE 186 (667)
T ss_dssp EEEEEECCSCEEE-EEEETTE-EEEEECSSSEEEBCTGGGTSSTTSCSBCSSC-CSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEEccceeEE-EEEcCCC-EEEeeCCCcchhhHHHHHhhhcCCCcccCCC-CCeEEEEEEEEEEHHHHHHHHHHHHh
Confidence 6999999999999 6666666 8999975321 22211111111 0111000 122578999997531
Q ss_pred -CCC---------------------Cccee--EEEEeeeee-cCCccccCCCHHHHHHHHHHHhcCccchhhccccccCC
Q 012588 214 -PDS---------------------RRQER--RYLIYDMMA-INQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRN 268 (460)
Q Consensus 214 -~~~---------------------~~~~~--ryliFDiL~-~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~~~~ 268 (460)
+.. .+..+ .|++|.++. .++.. -....+++..|+++-+.. +
T Consensus 187 ~g~~~faNpRNaaAGsLrqld~~~~a~r~L~~~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v------------~ 252 (667)
T 1dgs_A 187 RGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGLEESG--LKSQYELLLWLKEKGFPV------------E 252 (667)
T ss_dssp HTCCCCSSHHHHHHHHHSCSSHHHHHHSCCEEECCCBCTTTTTTSCC--CCBHHHHHHHHHHTTCCC------------C
T ss_pred cCCCcccChHHHHHHHHHhcChhhhhhCCCCCEEEEEEeeccCCCCC--CCCHHHHHHHHHHCCCCC------------C
Confidence 110 02357 899998741 13221 246778888888754321 1
Q ss_pred CCccCCCCCeEEEeccceechhHHHHHHHh---ccccCCCCceEEEEcCCCC------CccCCCCCeEEEccCCCceEEE
Q 012588 269 PYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARMNSVDF 339 (460)
Q Consensus 269 ~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~---~~~l~h~~DGLIF~p~~sp------Y~~G~~~~~LKWKP~~~nTVDF 339 (460)
+. .-. +-.+..+...++.+ ...++++.||+|++=.+-. |+......-+=||+|...-.--
T Consensus 253 ~~--------~~~---~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae~~~T~ 321 (667)
T 1dgs_A 253 HC--------YEK---ALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPAEEKETR 321 (667)
T ss_dssp SC--------EEE---EEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCCCCEEEE
T ss_pred cc--------ceE---eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCCceEEEE
Confidence 11 001 11222333333332 3678999999999975544 3333334556677765544433
Q ss_pred EEEE
Q 012588 340 LFEV 343 (460)
Q Consensus 340 ~l~~ 343 (460)
++.|
T Consensus 322 l~~I 325 (667)
T 1dgs_A 322 LLDV 325 (667)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3333
No 44
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=81.81 E-value=20 Score=38.55 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=91.3
Q ss_pred ceEEEEcCCeeEEEEEEECCE-EEEEeCCCccc--ccc--C----cCCcccCCCCccccCCCceeeeeEEEEecC-----
Q 012588 148 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M----RFPCRNSNEGLGEKTHHFTLLDGEMIIDKL----- 213 (460)
Q Consensus 148 ~Y~V~~K~DG~R~Ll~i~~~~-vyLidR~~~~~--~v~--~----~FP~~~~~~~l~~~~~~~TlLDGElV~d~~----- 213 (460)
.|++++|.||.=+-|.+.++. +..++|.+-.. .++ + .-|..-...+. ........+=||++..+.
T Consensus 117 ~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~~~~~-~~~p~~levRGEv~m~~~~F~~l 195 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDD-YPVPEVLEVRGEVFFRLDDFQAL 195 (615)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSSSCSSCCCCSS-CCCCSEEEEEEEEECCHHHHHHH
T ss_pred eEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcCcchhhcCCcc-cCCCCeEEEEEEEEEeHHHHHHH
Confidence 799999999999977777665 58899965321 121 1 11221100000 001234678899997531
Q ss_pred -------CC------------------CC---cceeEEEEeeeeecCCccccCCCHHHHHHHHHHHhcCccchhhccccc
Q 012588 214 -------PD------------------SR---RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQ 265 (460)
Q Consensus 214 -------~~------------------~~---~~~~ryliFDiL~~~G~~l~~~pf~eRl~~L~~~i~~pr~~~~~~l~~ 265 (460)
+. .. +..+.|++|.+...+|... ....++++.|+++-+.-
T Consensus 196 N~~~~~~g~~~faNpRNaAAGsLRqld~~ita~R~L~~f~y~~~~~~~~~~--~t~~e~l~~L~~~Gf~v---------- 263 (615)
T 3sgi_A 196 NASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRP--ATLHQAYLALRAWGLPV---------- 263 (615)
T ss_dssp HTTCSSSSSCCCSSHHHHHHHHHTCSSTTHHHHSCCEEEEEEEEEEESCCC--SBTTTHHHHHHHTTCCC----------
T ss_pred HHHHHHcCCCcCCChHHHHHHHHHcCChhhHhhCcceEEEEeccccCCCCC--cCHHHHHHHHHHCCCCC----------
Confidence 10 00 1358999999987765432 24568888888754321
Q ss_pred cCCCCccCCCCCeEEEeccceechhHHHHHHHh---ccccCCCCceEEEEcCCCCC------ccCCCCCeEEEccCCCce
Q 012588 266 SRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPY------VPRTHEGLLKWKYARMNS 336 (460)
Q Consensus 266 ~~~~~~~~~~~pf~I~~K~f~~~~~~~~ll~~~---~~~l~h~~DGLIF~p~~spY------~~G~~~~~LKWKP~~~nT 336 (460)
++.. +-+-.+..+.+..+.+ ...+++..||+|++=.+-++ +......-+=||+|...-
T Consensus 264 --~~~~-----------~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~Kfpaee~ 330 (615)
T 3sgi_A 264 --SEHT-----------TLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEA 330 (615)
T ss_dssp --CCCC-----------CCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCSEE
T ss_pred --CCCe-----------EeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEEcCCCcee
Confidence 1110 1111223333333332 35789999999998755433 333334566777765533
Q ss_pred EE
Q 012588 337 VD 338 (460)
Q Consensus 337 VD 338 (460)
.-
T Consensus 331 ~T 332 (615)
T 3sgi_A 331 QT 332 (615)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 45
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus}
Probab=75.87 E-value=2.5 Score=42.63 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=27.6
Q ss_pred CchhhhHHhcCC-CHHHHHHHHHhhCCCCcchh
Q 012588 1 MIVHFLMRSQSM-SVAQAIKKFAEVRPPGIYKN 32 (460)
Q Consensus 1 ~i~~yl~~~~~~-~~~~a~~~F~~~rppgi~~~ 32 (460)
+|||||+....+ +.++||+.|+..||+..-..
T Consensus 132 ~ia~~Li~~~~~~~~~eAl~~~~~~R~~~~~~p 164 (361)
T 3n0a_A 132 LVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSP 164 (361)
T ss_dssp HHHHHHHHTTSCSSHHHHHHHHHHHSTTCCCCH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCCH
Confidence 589999998887 99999999999998766543
No 46
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=74.41 E-value=2.5 Score=41.15 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=33.1
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhCCCCcchhHHHHHHHHHhc
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 43 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~rppgi~~~~y~~~l~~~y~ 43 (460)
++++||+...+||+++|++.....||-..-..-.....+....
T Consensus 123 vv~ayLm~~~g~s~~~A~~~v~~~Rp~~Pn~~~l~~~~~~~L~ 165 (294)
T 3nme_A 123 VALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILT 165 (294)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCCChhhhhHHHHHhhh
Confidence 4689999999999999999999999984444444444455555
No 47
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1
Probab=74.00 E-value=2 Score=42.37 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=28.8
Q ss_pred CchhhhHHhcCC-CHHHHHHHHHhhC---CCCcchhHH
Q 012588 1 MIVHFLMRSQSM-SVAQAIKKFAEVR---PPGIYKNEY 34 (460)
Q Consensus 1 ~i~~yl~~~~~~-~~~~a~~~F~~~r---ppgi~~~~y 34 (460)
+||+||+....| ++++|++.|+..| |+||..+.-
T Consensus 128 ~ia~yL~~~~~~~~~~eal~~~~~~R~~r~~~v~~~~Q 165 (324)
T 1d5r_A 128 MICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQ 165 (324)
T ss_dssp HHHHHHHHHTSCSSHHHHHHHHHHHHCSSSCSSCSHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCCCCCCCHHH
Confidence 579999999996 9999999999888 488876543
No 48
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Probab=67.76 E-value=1.9 Score=43.06 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=24.4
Q ss_pred CchhhhHHhcCC-CHHHHHHHHHhhCC
Q 012588 1 MIVHFLMRSQSM-SVAQAIKKFAEVRP 26 (460)
Q Consensus 1 ~i~~yl~~~~~~-~~~~a~~~F~~~rp 26 (460)
+|||||+....| +.++||+.|+.+||
T Consensus 136 ~ia~~Li~~~~~~~~~~Al~~~~~~R~ 162 (339)
T 3v0d_A 136 LVSSWLLEDGKFDTAKEALEYFGSRRT 162 (339)
T ss_dssp HHHHHHHHTTSCSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 479999999998 89999999999998
No 49
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=61.06 E-value=4.2 Score=37.06 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=30.9
Q ss_pred CchhhhHH-hcCCCHHHHHHHHHhhCCCCcch-hHHHHHHHHHh
Q 012588 1 MIVHFLMR-SQSMSVAQAIKKFAEVRPPGIYK-NEYIEALYTFY 42 (460)
Q Consensus 1 ~i~~yl~~-~~~~~~~~a~~~F~~~rppgi~~-~~y~~~l~~~y 42 (460)
++++||+. ..||++++|++.+...||||+.. .....-|+..+
T Consensus 150 ~~a~~L~~~~~g~~~~~a~~~vr~~R~~~~~~~~~Q~~~l~~~~ 193 (212)
T 1fpz_A 150 VAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFR 193 (212)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHCTTSSCSHHHHHHHTTHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 36799999 68999999999999999766653 33444444433
No 50
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A
Probab=44.43 E-value=9 Score=38.19 Aligned_cols=25 Identities=4% Similarity=0.025 Sum_probs=23.0
Q ss_pred CchhhhHHhcCCCHHHHHHHHHhhC
Q 012588 1 MIVHFLMRSQSMSVAQAIKKFAEVR 25 (460)
Q Consensus 1 ~i~~yl~~~~~~~~~~a~~~F~~~r 25 (460)
||+||+|-.++||+++|+..|...-
T Consensus 97 L~~~y~~~~~~~~~~~a~~~~~~~~ 121 (348)
T 1ohe_A 97 LVGCYMVIYLGRTPEEAYRILIFGE 121 (348)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 6899999999999999999999774
No 51
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.51 E-value=46 Score=24.92 Aligned_cols=22 Identities=5% Similarity=0.147 Sum_probs=18.9
Q ss_pred hhhhHHhcCCCHHHHHHHHHhh
Q 012588 3 VHFLMRSQSMSVAQAIKKFAEV 24 (460)
Q Consensus 3 ~~yl~~~~~~~~~~a~~~F~~~ 24 (460)
|.++.+..+|.++.||..|-..
T Consensus 37 A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 37 CRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHhC
Confidence 5678899999999999998764
No 52
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=22.25 E-value=40 Score=22.78 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=17.2
Q ss_pred hhhhHHhcCCCHHHHHHHHHh
Q 012588 3 VHFLMRSQSMSVAQAIKKFAE 23 (460)
Q Consensus 3 ~~yl~~~~~~~~~~a~~~F~~ 23 (460)
+..+.+..+|.++.||..|-.
T Consensus 23 A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 23 ARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHc
Confidence 456678899999999999854
No 53
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=20.28 E-value=29 Score=24.15 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.0
Q ss_pred hhhhHHhcCCCHHHHHHHH
Q 012588 3 VHFLMRSQSMSVAQAIKKF 21 (460)
Q Consensus 3 ~~yl~~~~~~~~~~a~~~F 21 (460)
|.+..|..+|.+++|+..|
T Consensus 24 A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 24 AITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHcCCcHHHHHHHH
Confidence 5677889999999999766
Done!