Query 012589
Match_columns 460
No_of_seqs 145 out of 1067
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 6.6E-22 2.3E-26 205.7 6.7 335 46-454 135-473 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.7 1.1E-17 3.8E-22 171.2 16.1 299 48-443 130-433 (451)
3 3o7q_A L-fucose-proton symport 99.7 6.3E-16 2.2E-20 157.7 18.8 290 45-439 125-428 (438)
4 2gfp_A EMRD, multidrug resista 99.6 5.1E-15 1.7E-19 148.3 12.6 257 45-418 96-353 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.6 1.6E-14 5.5E-19 150.0 16.8 346 44-450 115-478 (491)
6 2cfq_A Lactose permease; trans 99.5 2.3E-15 8E-20 154.1 6.1 146 286-455 265-411 (417)
7 2xut_A Proton/peptide symporte 99.2 4.7E-11 1.6E-15 124.9 11.3 149 291-452 346-511 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.2 9E-11 3.1E-15 121.6 11.2 183 227-445 11-198 (491)
9 2gfp_A EMRD, multidrug resista 99.1 2E-10 6.7E-15 114.7 11.1 178 233-450 4-181 (375)
10 1pw4_A Glycerol-3-phosphate tr 99.1 3.6E-10 1.2E-14 115.2 11.3 183 231-449 30-212 (451)
11 2xut_A Proton/peptide symporte 99.0 3E-09 1E-13 111.2 13.6 178 227-442 10-197 (524)
12 3o7q_A L-fucose-proton symport 99.0 5.5E-09 1.9E-13 106.0 14.6 147 285-450 66-237 (438)
13 4gc0_A D-xylose-proton symport 98.3 1.5E-06 5E-11 89.6 10.6 155 287-447 62-223 (491)
14 2cfq_A Lactose permease; trans 98.2 1.5E-07 5E-12 95.9 -0.0 182 229-447 7-191 (417)
15 2g9p_A Antimicrobial peptide l 27.1 29 0.001 19.6 1.4 13 300-312 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.84 E-value=6.6e-22 Score=205.69 Aligned_cols=335 Identities=10% Similarity=0.023 Sum_probs=203.7
Q ss_pred HHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHH
Q 012589 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (460)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~ 125 (460)
+..++.........+|++|.+|+++|++..++.+....+|.++++.++... ...... .......||.++.+..
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~ 207 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI--ARSGDA-----SWLNTDGWRYMFASEC 207 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSCT-----TTTTTTHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh--cccccc-----ccccchhhHHHhhhhh
Confidence 344555666778999999999999999999999999999999999887541 111100 0001246888888888
Q ss_pred HHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccccccc
Q 012589 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (460)
Q Consensus 126 i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (460)
++.++.. +..+..||+|++...+++.+++.+ .+++...+. ...++..+.++. ..+
T Consensus 208 ~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~--------~l~~~~~~~------------~~~~~~~~~~~~--~~~-- 262 (491)
T 4gc0_A 208 IPALLFL-MLLYTVPESPRWLMSRGKQEQAEG--------ILRKIMGNT------------LATQAVQEIKHS--LDH-- 262 (491)
T ss_dssp HHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHH--------HHHHHHHHH------------HHHHHHHHHHHH--HHH--
T ss_pred hhhhhhh-hhhhcCCCChHHHHHcCchhHHHH--------hHHHhcCCc------------hhHHHHHHHHHH--HHh--
Confidence 8876554 457789999988655443211110 010100000 000000000000 000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHH
Q 012589 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (460)
Q Consensus 206 ~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~ 285 (460)
.+.. .........++.....+...+.++.+.+.+.+|.+.+..+. +.+. .. ....
T Consensus 263 -------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------~~----~~~~ 317 (491)
T 4gc0_A 263 -------GRKT--GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL--GAST----------DI----ALLQ 317 (491)
T ss_dssp -------HHHH--TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--SCCH----------HH----HHHH
T ss_pred -------hhhh--hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc--CCCc----------cc----hhhH
Confidence 0000 00111223444444455556666777888887877655431 1110 01 1123
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012589 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
.++.++...+.+++..+++||+|||+..+.+...++++++..+.......+ +........+....+++
T Consensus 318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP------------GIVALLSMLFYVAAFAM 385 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc------------hHHHHHHHHHHHHHHHh
Confidence 345666778888999999999999999999998888887765544321100 10011112222223344
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc----CccchhHhHHHHHHHHHHHHhh
Q 012589 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG----GGNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g----~~~~~~f~~~~v~~lia~~~~~ 441 (460)
+++ .+++.+.+|..|.+ -+|+.+|+.+...++++++++.+++.+.+... ......|++.++++++++++++
T Consensus 386 ~~~---~~~~~~~~E~fPt~--~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 386 SWG---PVCWVLLSEIFPNA--IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp TTT---HHHHHHHHHSSCTT--THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHhCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444 46677999999974 55888899999999999999988776643210 0112468888999999999999
Q ss_pred hccCCCCCCCccC
Q 012589 442 LKLPHLSSNSFRS 454 (460)
Q Consensus 442 ~~vpe~~~~~~~~ 454 (460)
+++|||||||+..
T Consensus 461 ~~~PETkg~tLee 473 (491)
T 4gc0_A 461 KFVPETKGKTLEE 473 (491)
T ss_dssp HHCCCCTTCCHHH
T ss_pred heecCCCCCCHHH
Confidence 9999999999753
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.75 E-value=1.1e-17 Score=171.22 Aligned_cols=299 Identities=13% Similarity=0.116 Sum_probs=201.8
Q ss_pred hhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHH
Q 012589 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (460)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~ 127 (460)
.++......+..+++.|..|+++|++++++.+...++|.++|..+++.. .+. .++||+.|.+.+++
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~~------------~g~w~~~f~~~~~~ 195 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG--MAW------------FNDWHAALYMPAFC 195 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH--HHH------------TCCSTTCTHHHHHH
T ss_pred HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------hccHHHHHHHHHHH
Confidence 3444556678899999999999999999999999999999999888641 111 01388899988887
Q ss_pred HHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 012589 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (460)
Q Consensus 128 ~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (460)
.+++.++..+.+||+|.+...++. ++.++ +. ++..+.+ .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~---------------~~~~~~~-----~----- 234 (451)
T 1pw4_A 196 AILVALFAFAMMRDTPQSCGLPPI-EEYKN---------------DY---------------PDDYNEK-----A----- 234 (451)
T ss_dssp HHHHHHHHHHHCCCSSTTTCCCSC-TTTCC---------------C----------------------------------
T ss_pred HHHHHHHHHhhccCCHhhcCCCCh-hhhcc---------------cc---------------cccchhh-----h-----
Confidence 766666667778998754322111 00000 00 0000000 0
Q ss_pred CCCCCchhhHHHH-HHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012589 208 SFNDGPGAVLVNL-LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 208 ~~~~~~~~~~~~l-~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+++.+.++. ++... ..+.++.+++..++.+++...+..|.+.|+.+ .++.++ . ..| +.+
T Consensus 235 ----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---------~----~~~-~~~ 294 (451)
T 1pw4_A 235 ----EQELTAKQIFMQYVL-PNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL---------D----KSS-WAY 294 (451)
T ss_dssp --------CCTHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH---------H----HHH-HHH
T ss_pred ----hcccccccchHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH---------H----HHH-HHH
Confidence 000111121 22221 24667778888888899988899899988875 344332 1 122 345
Q ss_pred HHHHHHHHHHHHhHHHHhhhc--CchhHHHHHHHHHH-HHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012589 287 LLNSVVLGVSSFLIEPMCRWI--GSRLVWAISNFIVF-ACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~ri--G~r~l~~~g~~~~a-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
..+++..++.+++.+++.||+ |||+++.++..+.+ ++++...+... . +.+...+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~ 356 (451)
T 1pw4_A 295 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA---G---------------NPTVDMICMIVI 356 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT---T---------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc---c---------------CHHHHHHHHHHH
Confidence 567778888899999999999 99999887776665 44443332210 0 144555666678
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHH-HHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012589 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l-~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
|++.+......++++.|..|+ +.+|+.+|+.+....+ ++.+.+.+.|.+.+..|. ...|.+.+++.+++.++..+
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHH
Confidence 888887777777899999986 4679999999999999 999999999999888773 35788888888888776554
Q ss_pred c
Q 012589 443 K 443 (460)
Q Consensus 443 ~ 443 (460)
.
T Consensus 433 ~ 433 (451)
T 1pw4_A 433 V 433 (451)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.69 E-value=6.3e-16 Score=157.69 Aligned_cols=290 Identities=12% Similarity=0.072 Sum_probs=184.2
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccccccccccccccccc------------chhhc
Q 012589 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTS------------RACCA 112 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~------------~~~~~ 112 (460)
.+..++....+.+..+++.|..|+++|+++.++.+...++|.++|..++... ..+..+...+ .....
T Consensus 125 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (438)
T 3o7q_A 125 FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLSAYKHS 203 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH-HHTSSCCCCHHHHHHSCHHHHHHHHHH
T ss_pred HHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccccCCcchhhhhhhh
Confidence 4455556667778999999999999999999999999999999999988752 1011100000 00000
Q ss_pred cccchhHHHHHHHHHHHHHhhhe-eEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCccc
Q 012589 113 ACGNLKAAFLVAVVFLTLCALVT-IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHES 191 (460)
Q Consensus 113 ~~~~~~~~f~i~~i~~~i~~~it-l~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (460)
...+||+.|.+.+++.++..++. ....||++....+++
T Consensus 204 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----------------------------------------- 242 (438)
T 3o7q_A 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA----------------------------------------- 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-----------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-----------------------------------------
Confidence 00128999976665554443332 222333321100000
Q ss_pred chhhhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhcccc-ccceeecCCCCCCCh
Q 012589 192 DANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDW-MGREVYHGDPKGNDH 270 (460)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~-vg~~vf~~~p~~~~~ 270 (460)
+ + ...+..++++++ . +.++..++..++.+.+...+..|.+.| +.+ .++.++
T Consensus 243 -----------~---~---~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----- 294 (438)
T 3o7q_A 243 -----------K---Q---GSFSASLSRLAR----I-RHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-IPGMTA----- 294 (438)
T ss_dssp -----------S---T---TSHHHHHHHHTT----C-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTCCH-----
T ss_pred -----------c---c---cchhhhHHHHHh----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcch-----
Confidence 0 0 011222333332 2 345666777777777777887888888 554 444332
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcc
Q 012589 271 EVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQ 350 (460)
Q Consensus 271 ~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (460)
+ ..| +....+.+...+..++.+++.||+|||+++.++.++.+++++...+.. +
T Consensus 295 -----~---~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------- 347 (438)
T 3o7q_A 295 -----G---FAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG----G-------------- 347 (438)
T ss_dssp -----H---HHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC----H--------------
T ss_pred -----h---HHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC----C--------------
Confidence 0 122 344556777888899999999999999999998888877665544432 1
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHH
Q 012589 351 AIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLAS 430 (460)
Q Consensus 351 ~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~ 430 (460)
.. ..+.+.+.|++.+....+.++++.|..|++ .+...++.+ ...+++.+.+.+.|.+.+..|+. ...|.+.+
T Consensus 348 --~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~ 419 (438)
T 3o7q_A 348 --HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI-PTAELIPA 419 (438)
T ss_dssp --HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS-GGGGHHHH
T ss_pred --cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch-HHHHHHHH
Confidence 22 233446788888888888888988988863 466667776 56799999999999998888733 24677766
Q ss_pred HHHHHHHHH
Q 012589 431 LSALAGGVV 439 (460)
Q Consensus 431 v~~lia~~~ 439 (460)
++.++..++
T Consensus 420 ~~~~~~~~~ 428 (438)
T 3o7q_A 420 LCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.59 E-value=5.1e-15 Score=148.35 Aligned_cols=257 Identities=13% Similarity=0.006 Sum_probs=175.0
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012589 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++.........+++.|..|+++|++++++.+...++|.++|..+++.. .+. .+||..|.+.
T Consensus 96 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~-------------~~~~~~~~~~ 160 (375)
T 2gfp_A 96 AMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL--DTM-------------WNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS--SCH-------------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHh-------------ccHHHHHHHH
Confidence 3445556667778899999999999999999999999999999999888652 111 2689999988
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012589 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.+++.++..+.+||+|.++.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 187 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAPRTR----------------------------------------------------- 187 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCCCCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCcccCCCCccccc-----------------------------------------------------
Confidence 888877777667778887633211000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012589 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
.+..++++++. |.++.+++..++.+.+...+..|.+.|+.+ .++.+ + ...| +
T Consensus 188 --------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~------------~-~~~g-~ 239 (375)
T 2gfp_A 188 --------LLTSYKTLFGN-----SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGLS------------S-MTVS-I 239 (375)
T ss_dssp --------TTTCSTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHHHH------------H-HHHH-H
T ss_pred --------HHHHHHHHhcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC------------H-HHHH-H
Confidence 01112334443 456777888888888888888888887764 22211 1 1122 3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHH-HHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012589 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFI-VFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~-~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
....+++...+.+.+.+++.||+++|. ..+... ..+++....+... ..+ +.+...+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~l~ 301 (375)
T 2gfp_A 240 LFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF-GVM---------------NVWTLLVPAALF 301 (375)
T ss_dssp HHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-HHH---------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-ccc---------------cHHHHHHHHHHH
Confidence 445567777888899999999988732 233222 2111111111110 000 144555667788
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecc
Q 012589 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~ 418 (460)
|++.+.......+++.|..|+ .+|+.+|+.+....+++.+.+.+.|.+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~p~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 302 FFGAGMLFPLATSGAMEPFPF---LAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HHHHHHTSSTTHHHHHTHHHH---HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhCCc---ccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999883 4699999999999999999999888876543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.59 E-value=1.6e-14 Score=149.98 Aligned_cols=346 Identities=11% Similarity=0.050 Sum_probs=182.5
Q ss_pred HHHHhhcccccchhHHHHHhcCCCccc--hhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHH
Q 012589 44 FWLLDLANNTVQGPARALLADLSGPDQ--RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (460)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~q--r~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f 121 (460)
..+..++......+..+++.|..|+++ |+++.++++...++|..+|..+++. +.+. .+||+.|
T Consensus 115 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--l~~~-------------~g~~~~f 179 (491)
T 4aps_A 115 IILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA--AQEA-------------AGYHVAF 179 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------------SCHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH--HHhh-------------hhHHHHH
Confidence 344556666677789999999999988 6778888999999999999988865 2111 2699999
Q ss_pred HHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCcc-ccccccccCCCC---CCCCCCCCCccCCcccchhhhh
Q 012589 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQ-RNAISKSKHDMP---AAPNANGNKVESGHESDANLKH 197 (460)
Q Consensus 122 ~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 197 (460)
.+.++..+++.++..+..|+... +..+.+ ++ + .+.++ +...+....-.- ....... ..+. .+.++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~--~~~~-~~~~~~~~ 251 (491)
T 4aps_A 180 SLAAIGMFIGLLVYYFGGKKTLD-PHYLRP-TD--P-LAPEEVKPLLVKVSLAVAGFIAIIVVMN--LVGW-NSLPAYIN 251 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-SCCSCC-SC--C-CSHHHHHHHHHHCCCCCHHHHHHHHHHH--HHSS-CCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccc-ccccCC-CC--c-cccchhHHHHHHHHHHHHHHHHHHHHHH--hccC-cccccchh
Confidence 99888776666554433333221 111110 00 0 00000 000000000000 0000000 0000 00000000
Q ss_pred h-cccccccCCCCCCCchhhHHHHHHHhc------cCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCCh
Q 012589 198 I-SKKAEDTNGSFNDGPGAVLVNLLTSLR------HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDH 270 (460)
Q Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~l~~s~~------~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~ 270 (460)
. ..... . .....+...++... +.......+++..++.|..+.....+.+.|..+ .++.++..
T Consensus 252 ~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 320 (491)
T 4aps_A 252 LLTIVAI---A----IPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE-RVDSSWFP--- 320 (491)
T ss_dssp HHHHHHH---H----HHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH-SCCCSSSC---
T ss_pred hhhHHHH---H----HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HhccCccC---
Confidence 0 00000 0 00000000000000 000112334555666666666666666666554 33333110
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHH-----HHHHHHHHHHHHHHHhhhhccccccCccccC
Q 012589 271 EVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA-----ISNFIVFACMATTAIISVISVREYSGGIEHG 345 (460)
Q Consensus 271 ~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~-----~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 345 (460)
.+ +.....++...+.+.+.+++.||+|||+... ++.++.+++++.+.+......+ ...
T Consensus 321 ------~~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 383 (491)
T 4aps_A 321 ------VS-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT----SGK-- 383 (491)
T ss_dssp ------SG-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC----CTT--
T ss_pred ------HH-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC----CCC--
Confidence 11 1223445566677888899999999986654 6777777766555443211000 000
Q ss_pred CCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchh
Q 012589 346 IGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPA 425 (460)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~ 425 (460)
...+...+.+.+.|++.+......++++.|..|++ .+|+.+|+.+....+++.+.+.+.|.+.+. +. ...
T Consensus 384 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~--~~~ 453 (491)
T 4aps_A 384 -----VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA--FNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SE--VAY 453 (491)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT--CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-ST--THH
T ss_pred -----ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cH--HHH
Confidence 01344556677789998888888889999999974 568888999999999999999987776543 32 346
Q ss_pred HhHHHHHHHHHHHHhhhccCCCCCC
Q 012589 426 FVLASLSALAGGVVATLKLPHLSSN 450 (460)
Q Consensus 426 f~~~~v~~lia~~~~~~~vpe~~~~ 450 (460)
|...++++++++++.++..|+.+.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 454 FSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777777777654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.55 E-value=2.3e-15 Score=154.14 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012589 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
..+..+...+..++.+++.||+|||++...+.++++++++...+.. + .+..++...+.++
T Consensus 265 ~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~~~ 324 (417)
T 2cfq_A 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT----S----------------ALEVVILKTLHMF 324 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC----S----------------HHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHH
Confidence 3455566677788999999999999999888877777655443321 1 2333444444565
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhh-hHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012589 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi-~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
+.+......+++++|..|+ +.+|+..|+ +|....+++++.|.+.|.+.+..| ....|.+.+++++++++...+..
T Consensus 325 ~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 325 EVPFLLVGCFKYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhh
Confidence 5554444456789999987 456887888 599999999999999998887665 23578888999999988777788
Q ss_pred CCCCCCCccCC
Q 012589 445 PHLSSNSFRSS 455 (460)
Q Consensus 445 pe~~~~~~~~~ 455 (460)
||++..|.-+.
T Consensus 401 ~~~~~~~~~~~ 411 (417)
T 2cfq_A 401 SGPGPLSLLRR 411 (417)
T ss_dssp CCSCTTCSSSS
T ss_pred cCCCchHHHHH
Confidence 98888776554
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.20 E-value=4.7e-11 Score=124.89 Aligned_cols=149 Identities=9% Similarity=0.023 Sum_probs=86.3
Q ss_pred HHHHHHHHhHHHHh----hhcCc----hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHH
Q 012589 291 VVLGVSSFLIEPMC----RWIGS----RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (460)
Q Consensus 291 i~~~l~s~i~~~l~----~riG~----r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (460)
+...+.+.+.+++. ||.|+ ++...+|.++.+++++.+.+......+ .... +.+...+.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~l 414 (524)
T 2xut_A 346 LLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDG----GSAL-------SIFWQILPYAL 414 (524)
T ss_dssp GGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT----TCCC-------CSHHHHHHHHH
T ss_pred HHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCc-------CHHHHHHHHHH
Confidence 33444455555443 44443 355667877777776655443210000 0000 13345556677
Q ss_pred hhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccC---------ccchhHhHHHHHH
Q 012589 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG---------GNIPAFVLASLSA 433 (460)
Q Consensus 363 ~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~---------~~~~~f~~~~v~~ 433 (460)
.|++.+......++++.|..|++ .+|+.+|+.|+...+++++.+.+.|.+.+..+. .....|.+.++++
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKA--MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFA 492 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTT--CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHH
Confidence 88888888888888999999874 568899999999999999999998887763210 0012377778888
Q ss_pred HHHHHHhhhccCCCCCCCc
Q 012589 434 LAGGVVATLKLPHLSSNSF 452 (460)
Q Consensus 434 lia~~~~~~~vpe~~~~~~ 452 (460)
++++++..++.|+.+.+.-
T Consensus 493 ~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 493 ILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHhccchh
Confidence 8888776677787776653
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.16 E-value=9e-11 Score=121.61 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhcccccccee----ecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012589 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREV----YHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEP 302 (460)
Q Consensus 227 mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~v----f~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~ 302 (460)
.|+.++.++...++..++++.+..+.+.|+.+.. ++.++ . ..| +....+.+...+.+++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------~----~~~-~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITR---------A----TAA-SIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCH---------H----HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCH---------H----HHH-HHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888778888776532 33221 0 122 3556678888899999999
Q ss_pred Hhhh-cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhcc
Q 012589 303 MCRW-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAEL 381 (460)
Q Consensus 303 l~~r-iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~ 381 (460)
+.|| +|||+++.++.++.+++.+...+.. + .+..++...+.|++.+.......++++|.
T Consensus 77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 136 (491)
T 4aps_A 77 VADRIIGARPAVFWGGVLIMLGHIVLALPF----G----------------ASALFGSIILIIIGTGFLKPNVSTLVGTL 136 (491)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHSCC----S----------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999 8999999999999888776655432 2 34456667788999998888889999999
Q ss_pred ccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012589 382 TADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 382 ~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
.|+++|++|..+++++....++.++.+.+.+.+.+..| ..+.|.+.++..+++.+...+..|
T Consensus 137 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 137 YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99866667888999999999999999999888877665 345788888777777665544433
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=2e-10 Score=114.73 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhH
Q 012589 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 312 (460)
Q Consensus 233 ~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l 312 (460)
.+++..++.++++..+..+.+.+..+ ++.++. ..| +....+.+...+.+.+.+++.||+|||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~-------------~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 67 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD--LNVREG-------------AVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPV 67 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--SSSTTH-------------HHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH--cCCCHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 45777888888877777777766543 443321 122 34556777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccc
Q 012589 313 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLA 392 (460)
Q Consensus 313 ~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~ 392 (460)
+.++.++.+++.+...+.. + .+..++...+.|++.+.......++++|..|++ ++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~ 125 (375)
T 2gfp_A 68 ILVGMSIFMLATLVAVTTS----S----------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERT--QLRHA 125 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHH----H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCCSH
T ss_pred HHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH--HHHHH
Confidence 9999999988887766654 2 556677778899999999999999999999874 56889
Q ss_pred hhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCCC
Q 012589 393 IGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSN 450 (460)
Q Consensus 393 ~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~~ 450 (460)
+|+.+....++.++.+.+.+.+.+..|. ...|.+.++..++..+...+.+||++.+
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 126 NSLLNMGILVSPLLAPLIGGLLDTMWNW--RACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCHHHH--HHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999999998888776552 3578888888887777666778887654
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.08 E-value=3.6e-10 Score=115.15 Aligned_cols=183 Identities=15% Similarity=0.077 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCch
Q 012589 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR 310 (460)
Q Consensus 231 l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r 310 (460)
+..+++..++..+....+..+.+.+..+ + .++. ..| +...++.+...+.+.+.+++.||+|||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~s~~-------------~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r 92 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQ--G-FSRG-------------DLG-FALSGISIAYGFSKFIMGSVSDRSNPR 92 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSS--T-TCSS-------------CHH-HHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-ccHh-------------HHH-HHHHHHHHHHHHHHHhHHHHHHhcCch
Confidence 3456677777777777777777776654 2 3322 122 345567778888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcc
Q 012589 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQG 390 (460)
Q Consensus 311 ~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G 390 (460)
+++.++.++++++.++.++......+ .+..++...+.|++.+.....-.++++|..|+ +++|
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~ 154 (451)
T 1pw4_A 93 VFLPAGLILAAAVMLFMGFVPWATSS----------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--KERG 154 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHSS----------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT--THHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc----------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCc--hhhh
Confidence 99999999999988877762100001 34566677789999998888888999999986 4579
Q ss_pred cchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCC
Q 012589 391 LAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (460)
Q Consensus 391 ~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~ 449 (460)
+.+|+.+....+++++.+.+.+.+.+..|+ ..++|.+.++++++.++..++.+||++.
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCC-STTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999988887766651 2357888888888888777777887643
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.98 E-value=3e-09 Score=111.15 Aligned_cols=178 Identities=13% Similarity=0.012 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhccccccceeec------CCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012589 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYH------GDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (460)
Q Consensus 227 mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~------~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~ 300 (460)
.|+.++.+++..++..++++.+..+.+.|+.++ ++ .++. ..| +.+..+.+...+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~s~~-------------~~g-~~~~~~~~~~~~~~~~~ 74 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIPEELRGA-------------VAK-DVFHSFVIGVYFFPLLG 74 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCSSSTTTT-------------THH-HHHHHHHHHHHHTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccCHH-------------HHH-HHHHHHHHHHHHHHHHH
Confidence 345667788888888888888887888777653 44 2221 122 34556777788889999
Q ss_pred HHHhhhc-CchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhh
Q 012589 301 EPMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITA 379 (460)
Q Consensus 301 ~~l~~ri-G~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis 379 (460)
+++.||+ |||+++.++.++.+++.++..+... + .+..++...+.|++.+.....-.++++
T Consensus 75 G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~ 135 (524)
T 2xut_A 75 GWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH---S----------------VQGFYTGLFLIALGSGGIKPLVSSFMG 135 (524)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS---C----------------HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc---c----------------HHHHHHHHHHHHHhccccchhHHHHHH
Confidence 9999999 9999999999888887766554420 1 445666677889999988888889999
Q ss_pred ccccCCCCCcccchhh---hHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012589 380 ELTADSGGGQGLAIGV---LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 380 ~~~~~~~~~~G~~~Gi---~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
|..|+++ +|+..++ .+....++.++.+.+.+.+.+..| ..+.|.+.+++.+++.+...+
T Consensus 136 ~~~~~~~--r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 136 DQFDQSN--KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HTCSTTT--TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 9998753 4544444 999999999999999888876655 245788888877777665443
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.97 E-value=5.5e-09 Score=106.04 Aligned_cols=147 Identities=9% Similarity=-0.052 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012589 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+++.+++.||+|||+++.++.++++++.++....... + +.+..++...+.|
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~---------------~~~~l~~~~~l~G 128 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--M---------------NYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--T---------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--c---------------cHHHHHHHHHHHH
Confidence 4556777888889999999999999999999999999888766332211 1 2566777888899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce-ecccCc----------------------
Q 012589 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD-ALFGGG---------------------- 421 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~-~~~g~~---------------------- 421 (460)
++.+.....-.++++|..|+ +++|..+|+.+....++.++.+.+.+.+. +..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVL 206 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhh
Confidence 99999998989999999987 45688999999999999999999988877 443310
Q ss_pred -cchhHhHHHHHHHHHHHHhh-hccCCCCCC
Q 012589 422 -NIPAFVLASLSALAGGVVAT-LKLPHLSSN 450 (460)
Q Consensus 422 -~~~~f~~~~v~~lia~~~~~-~~vpe~~~~ 450 (460)
..+.|.+.++..++..+... ...||++.+
T Consensus 207 ~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 23456556655555544433 346776653
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.34 E-value=1.5e-06 Score=89.62 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhcccccc-CccccCCCCcchhHHHHHHHHHHhhh
Q 012589 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYS-GGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
..+.+-.++.+++.+++.||+|||+++.++.+++.++-++.++.......... ......+- .+....++.-.+.|+
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a---~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA---GYVPEFVIYRIIGGI 138 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG---GCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh---hhHHHHHHHHHHHHH
Confidence 34566677889999999999999999999999998887766643210000000 00000000 025667778889999
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc-----Ccc-chhHhHHHHHHHHHHHH
Q 012589 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-----GGN-IPAFVLASLSALAGGVV 439 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g-----~~~-~~~f~~~~v~~lia~~~ 439 (460)
+.|....+-.++++|..|+ +.+|...++.+.+..++++++......+....+ ... ...+....+.+++..+
T Consensus 139 g~G~~~~~~~~~i~E~~p~--~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (491)
T 4gc0_A 139 GVGLASMLSPMYIAELAPA--HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM- 215 (491)
T ss_dssp HHHHHHHHHHHHHHTTSCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhCCH--HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-
Confidence 9999999999999999997 466999999999999999988776544332221 111 1124444444444333
Q ss_pred hhhccCCC
Q 012589 440 ATLKLPHL 447 (460)
Q Consensus 440 ~~~~vpe~ 447 (460)
..+.+||+
T Consensus 216 ~~~~~peS 223 (491)
T 4gc0_A 216 LLYTVPES 223 (491)
T ss_dssp HGGGSCCC
T ss_pred hhhcCCCC
Confidence 34678987
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.23 E-value=1.5e-07 Score=95.93 Aligned_cols=182 Identities=13% Similarity=0.042 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012589 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
|.++.++...++.++++..+..|.+.|+.++ ++-++. ..| +.+..+.+...+.+.+.|+++||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~~-------------~~g-~~~~~~~~~~~i~~~~~G~lsDr~G 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-NHISKS-------------DTG-IIFAAISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTT-TCCCTT-------------TSH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777777777777777778877642 443332 122 2445667788889999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHH---HhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCC
Q 012589 309 SRLVWAISNFIVFACMATTA---IISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~ 385 (460)
||+++.++..+++++..... +......+ .+....+.|+..+.......+++.++.++.
T Consensus 72 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 132 (417)
T 2cfq_A 72 LRKYLLWIITGMLVMFAPFFIFIFGPLLQYN-------------------ILVGSIVGGIYLGFCFNAGAPAVEAFIEKV 132 (417)
T ss_dssp TCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT-------------------CCHHHHGGGSSTTHHHHTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 99999988776654221111 11100000 011112223322222222223444444332
Q ss_pred CCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012589 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 386 ~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
.|+.|...|..+....++..+.+.+.+.+.+. + ....|++.++..++..+...+..||+
T Consensus 133 ~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N--NQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C--SHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 23457777888888888888888877777653 3 23567777776665555443344554
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=27.06 E-value=29 Score=19.58 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHhhhcCchhH
Q 012589 300 IEPMCRWIGSRLV 312 (460)
Q Consensus 300 ~~~l~~riG~r~l 312 (460)
.+++++++|||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4789999999854
Done!