Query 012592
Match_columns 460
No_of_seqs 377 out of 1561
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 1.9E-78 4.1E-83 636.1 22.9 255 89-359 256-527 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 1.1E-70 2.3E-75 540.3 20.7 223 100-347 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 3.5E-48 7.6E-53 352.7 15.0 137 143-291 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 1.6E-31 3.6E-36 253.8 18.0 197 119-356 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 2.5E-19 5.5E-24 168.9 11.3 168 120-323 4-186 (199)
6 smart00327 VWA von Willebrand 98.8 3.1E-08 6.8E-13 88.5 10.6 150 119-307 2-160 (177)
7 cd01461 vWA_interalpha_trypsin 98.8 1.3E-07 2.8E-12 85.3 13.6 147 119-303 3-150 (171)
8 PF13920 zf-C3HC4_3: Zinc fing 98.7 3.8E-09 8.3E-14 79.3 0.6 44 413-456 1-50 (50)
9 cd01463 vWA_VGCC_like VWA Volt 98.6 3.2E-07 7E-12 85.8 11.8 147 119-302 14-176 (190)
10 KOG4172 Predicted E3 ubiquitin 98.6 4E-09 8.6E-14 81.1 -1.9 46 415-460 8-60 (62)
11 cd00198 vWFA Von Willebrand fa 98.6 9.9E-07 2.2E-11 76.2 12.5 146 120-303 2-153 (161)
12 cd01471 vWA_micronemal_protein 98.6 7.1E-07 1.5E-11 82.7 11.6 169 119-321 1-178 (186)
13 cd01464 vWA_subfamily VWA subf 98.5 6.3E-07 1.4E-11 82.7 9.6 144 119-304 4-160 (176)
14 cd01450 vWFA_subfamily_ECM Von 98.4 1.6E-06 3.4E-11 76.7 10.5 145 120-303 2-153 (161)
15 PLN03208 E3 ubiquitin-protein 98.4 1E-07 2.2E-12 90.9 2.4 46 410-455 14-80 (193)
16 cd01466 vWA_C3HC4_type VWA C3H 98.4 2.3E-06 5.1E-11 77.7 11.1 141 120-303 2-145 (155)
17 PF15227 zf-C3HC4_4: zinc fing 98.4 8.1E-08 1.7E-12 70.3 0.6 33 417-449 1-42 (42)
18 KOG1571 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 97.0 1.7 48 413-460 304-353 (355)
19 cd01454 vWA_norD_type norD typ 98.4 8.7E-06 1.9E-10 74.9 13.5 150 120-294 2-154 (174)
20 KOG0823 Predicted E3 ubiquitin 98.3 1.6E-07 3.4E-12 91.3 1.5 49 412-460 45-103 (230)
21 PF13519 VWA_2: von Willebrand 98.3 4.5E-06 9.7E-11 74.2 10.7 139 120-295 1-139 (172)
22 KOG4275 Predicted E3 ubiquitin 98.3 8.2E-08 1.8E-12 95.9 -1.0 48 413-460 299-348 (350)
23 cd01465 vWA_subgroup VWA subgr 98.3 2.1E-05 4.5E-10 71.0 14.2 146 119-301 1-149 (170)
24 KOG0320 Predicted E3 ubiquitin 98.3 2E-07 4.2E-12 87.5 0.7 47 414-460 131-186 (187)
25 PHA02929 N1R/p28-like protein; 98.3 2.9E-07 6.4E-12 90.6 1.9 46 413-458 173-231 (238)
26 KOG0317 Predicted E3 ubiquitin 98.3 3E-07 6.4E-12 91.9 1.9 44 412-455 237-285 (293)
27 KOG4265 Predicted E3 ubiquitin 98.2 4.2E-07 9.1E-12 93.1 2.0 49 412-460 288-342 (349)
28 cd01456 vWA_ywmD_type VWA ywmD 98.2 1.1E-05 2.4E-10 76.3 10.4 160 119-301 21-188 (206)
29 KOG2164 Predicted E3 ubiquitin 98.1 1.4E-06 3.1E-11 92.8 3.6 42 414-455 186-237 (513)
30 cd01470 vWA_complement_factors 98.1 2.7E-05 6E-10 73.2 11.8 153 119-303 1-176 (198)
31 cd01482 vWA_collagen_alphaI-XI 98.1 2.6E-05 5.5E-10 71.2 11.2 142 120-303 2-151 (164)
32 cd01473 vWA_CTRP CTRP for CS 98.1 7.3E-05 1.6E-09 70.9 14.3 170 120-322 2-180 (192)
33 TIGR00599 rad18 DNA repair pro 98.1 1.2E-06 2.6E-11 92.0 2.0 50 406-455 18-72 (397)
34 PHA02926 zinc finger-like prot 98.1 9.8E-07 2.1E-11 85.6 1.2 46 412-457 168-233 (242)
35 cd01472 vWA_collagen von Wille 98.1 3.5E-05 7.5E-10 70.0 11.1 141 120-303 2-151 (164)
36 TIGR03788 marine_srt_targ mari 98.1 2.9E-05 6.3E-10 85.4 12.4 145 119-302 272-418 (596)
37 cd01476 VWA_integrin_invertebr 98.0 0.00012 2.6E-09 66.1 12.9 134 119-293 1-142 (163)
38 PF13639 zf-RING_2: Ring finge 98.0 1E-06 2.3E-11 64.3 -0.4 35 416-450 2-44 (44)
39 smart00504 Ubox Modified RING 97.9 5E-06 1.1E-10 64.3 2.4 41 415-455 2-47 (63)
40 PF13768 VWA_3: von Willebrand 97.9 6.3E-05 1.4E-09 67.6 9.8 142 120-301 2-145 (155)
41 PF13923 zf-C3HC4_2: Zinc fing 97.9 2.8E-06 6.1E-11 60.6 0.8 33 417-449 1-39 (39)
42 cd01467 vWA_BatA_type VWA BatA 97.9 0.00013 2.9E-09 66.7 11.8 140 119-292 3-142 (180)
43 cd01480 vWA_collagen_alpha_1-V 97.9 0.00014 3E-09 68.0 11.2 146 119-302 3-160 (186)
44 PF14634 zf-RING_5: zinc-RING 97.8 7.8E-06 1.7E-10 60.0 1.7 36 416-451 1-44 (44)
45 PF00092 VWA: von Willebrand f 97.8 0.00013 2.7E-09 65.7 9.8 145 120-302 1-153 (178)
46 cd01462 VWA_YIEM_type VWA YIEM 97.8 0.00041 8.8E-09 62.1 13.0 133 120-293 2-135 (152)
47 PTZ00441 sporozoite surface pr 97.7 0.00038 8.3E-09 76.2 13.3 142 118-293 42-189 (576)
48 cd01474 vWA_ATR ATR (Anthrax T 97.7 0.00021 4.6E-09 66.6 9.8 146 119-303 5-155 (185)
49 cd00162 RING RING-finger (Real 97.7 1.3E-05 2.7E-10 56.6 1.2 38 416-453 1-45 (45)
50 PF00097 zf-C3HC4: Zinc finger 97.7 9.3E-06 2E-10 58.0 -0.0 33 417-449 1-41 (41)
51 COG5574 PEX10 RING-finger-cont 97.7 1.5E-05 3.3E-10 79.0 1.3 44 412-455 213-263 (271)
52 cd01475 vWA_Matrilin VWA_Matri 97.6 0.00042 9E-09 66.8 11.0 142 119-302 3-155 (224)
53 KOG0978 E3 ubiquitin ligase in 97.6 1.5E-05 3.2E-10 88.4 0.7 44 412-455 641-690 (698)
54 cd01453 vWA_transcription_fact 97.6 0.00075 1.6E-08 63.6 11.7 139 119-293 4-147 (183)
55 cd01451 vWA_Magnesium_chelatas 97.6 0.0012 2.6E-08 61.2 12.9 145 121-301 3-153 (178)
56 cd01477 vWA_F09G8-8_type VWA F 97.6 0.00083 1.8E-08 64.1 11.9 139 119-293 20-172 (193)
57 cd01469 vWA_integrins_alpha_su 97.5 0.00099 2.1E-08 61.9 11.3 135 119-293 1-143 (177)
58 PF13445 zf-RING_UBOX: RING-ty 97.5 2.3E-05 5.1E-10 57.8 -0.0 26 417-443 1-31 (43)
59 cd01460 vWA_midasin VWA_Midasi 97.5 0.0014 3.1E-08 65.8 12.6 138 119-293 61-205 (266)
60 smart00184 RING Ring finger. E 97.5 8.3E-05 1.8E-09 50.5 2.4 33 417-449 1-39 (39)
61 PRK13685 hypothetical protein; 97.5 0.0019 4.1E-08 66.1 13.3 143 119-293 89-239 (326)
62 KOG0287 Postreplication repair 97.4 2.8E-05 6.1E-10 79.4 -0.6 46 410-455 19-69 (442)
63 KOG0311 Predicted E3 ubiquitin 97.4 7.3E-06 1.6E-10 84.0 -4.9 48 409-456 38-92 (381)
64 PF09967 DUF2201: VWA-like dom 97.3 0.00089 1.9E-08 59.8 8.2 121 121-301 1-125 (126)
65 PF14835 zf-RING_6: zf-RING of 97.3 6.2E-05 1.3E-09 60.1 0.4 43 412-454 5-51 (65)
66 KOG1785 Tyrosine kinase negati 97.3 7.6E-05 1.6E-09 77.7 0.8 42 415-456 370-418 (563)
67 cd01481 vWA_collagen_alpha3-VI 97.2 0.0046 1E-07 57.2 11.7 142 120-303 2-154 (165)
68 COG5540 RING-finger-containing 97.2 0.00012 2.6E-09 74.0 1.0 41 414-454 323-372 (374)
69 cd01458 vWA_ku Ku70/Ku80 N-ter 97.2 0.0082 1.8E-07 57.6 13.5 155 120-294 3-174 (218)
70 PF04564 U-box: U-box domain; 97.2 0.00013 2.9E-09 59.1 0.8 44 413-456 3-52 (73)
71 cd01455 vWA_F11C1-5a_type Von 97.1 0.0038 8.2E-08 60.0 10.6 156 120-301 2-161 (191)
72 KOG4628 Predicted E3 ubiquitin 97.1 0.0002 4.2E-09 74.2 1.6 41 415-455 230-279 (348)
73 COG5432 RAD18 RING-finger-cont 97.1 0.00014 3E-09 73.2 0.3 44 411-454 22-70 (391)
74 PRK13406 bchD magnesium chelat 97.0 0.0087 1.9E-07 66.3 13.8 166 119-321 402-570 (584)
75 TIGR02031 BchD-ChlD magnesium 97.0 0.011 2.4E-07 65.5 14.2 155 119-303 408-571 (589)
76 KOG0804 Cytoplasmic Zn-finger 96.9 0.00051 1.1E-08 72.6 2.7 46 408-453 169-221 (493)
77 KOG1100 Predicted E3 ubiquitin 96.9 0.00046 1E-08 66.9 2.0 45 416-460 160-206 (207)
78 PF12678 zf-rbx1: RING-H2 zinc 96.9 0.00045 9.8E-09 56.2 1.4 36 415-450 20-73 (73)
79 cd01452 VWA_26S_proteasome_sub 96.8 0.013 2.9E-07 56.0 11.4 161 121-320 6-174 (187)
80 TIGR03436 acidobact_VWFA VWFA- 96.8 0.015 3.2E-07 58.2 12.1 136 116-292 52-204 (296)
81 COG5243 HRD1 HRD ubiquitin lig 96.6 0.00083 1.8E-08 69.7 1.1 43 411-453 284-344 (491)
82 TIGR02442 Cob-chelat-sub cobal 96.5 0.049 1.1E-06 60.9 14.4 141 119-293 466-611 (633)
83 KOG0802 E3 ubiquitin ligase [P 96.3 0.0012 2.6E-08 72.2 0.7 42 412-453 289-340 (543)
84 KOG2879 Predicted E3 ubiquitin 96.3 0.0032 7E-08 63.2 3.3 42 413-454 238-287 (298)
85 COG5236 Uncharacterized conser 96.2 0.0022 4.7E-08 66.1 2.0 49 408-456 55-110 (493)
86 KOG4159 Predicted E3 ubiquitin 96.2 0.0018 3.8E-08 68.5 1.1 45 411-455 81-130 (398)
87 KOG4692 Predicted E3 ubiquitin 96.1 0.0019 4.1E-08 66.7 0.9 46 412-457 420-470 (489)
88 PF12861 zf-Apc11: Anaphase-pr 96.0 0.0035 7.6E-08 52.8 1.8 39 416-454 34-82 (85)
89 PRK10997 yieM hypothetical pro 95.8 0.16 3.5E-06 55.3 13.9 144 119-303 324-469 (487)
90 KOG1039 Predicted E3 ubiquitin 95.8 0.0038 8.2E-08 64.9 1.3 46 412-457 159-224 (344)
91 TIGR00868 hCaCC calcium-activa 95.7 0.08 1.7E-06 61.1 11.8 140 121-301 307-449 (863)
92 PF05762 VWA_CoxE: VWA domain 95.7 0.12 2.6E-06 50.2 11.2 121 119-279 58-179 (222)
93 KOG3002 Zn finger protein [Gen 95.6 0.0066 1.4E-07 62.0 2.1 44 411-454 45-91 (299)
94 PF14447 Prok-RING_4: Prokaryo 95.2 0.0098 2.1E-07 46.2 1.6 43 413-455 6-51 (55)
95 COG5152 Uncharacterized conser 94.8 0.0095 2.1E-07 57.4 0.4 41 415-455 197-242 (259)
96 KOG0825 PHD Zn-finger protein 94.5 0.0062 1.3E-07 68.3 -1.6 45 413-457 122-174 (1134)
97 KOG2660 Locus-specific chromos 94.4 0.01 2.2E-07 60.9 -0.2 46 411-456 12-63 (331)
98 KOG3039 Uncharacterized conser 94.1 0.026 5.7E-07 56.0 1.9 44 413-456 220-272 (303)
99 KOG0297 TNF receptor-associate 93.9 0.033 7.2E-07 58.9 2.3 45 411-455 18-68 (391)
100 KOG1813 Predicted E3 ubiquitin 93.9 0.026 5.6E-07 57.3 1.3 42 415-456 242-288 (313)
101 COG4245 TerY Uncharacterized p 93.8 0.76 1.6E-05 44.4 10.9 138 120-302 5-159 (207)
102 KOG2177 Predicted E3 ubiquitin 93.7 0.025 5.5E-07 53.6 1.0 34 416-451 18-55 (386)
103 PF14570 zf-RING_4: RING/Ubox 93.6 0.024 5.2E-07 43.0 0.5 37 417-453 1-47 (48)
104 PF04641 Rtf2: Rtf2 RING-finge 93.5 0.049 1.1E-06 54.4 2.6 45 411-455 110-162 (260)
105 KOG0828 Predicted E3 ubiquitin 93.2 0.025 5.3E-07 60.9 0.0 43 412-454 569-634 (636)
106 KOG1002 Nucleotide excision re 92.1 0.036 7.8E-07 60.1 -0.6 43 412-454 534-586 (791)
107 COG5175 MOT2 Transcriptional r 91.4 0.076 1.7E-06 55.0 0.9 42 413-454 13-64 (480)
108 KOG0826 Predicted E3 ubiquitin 90.9 0.2 4.4E-06 51.7 3.4 49 412-460 298-354 (357)
109 KOG1001 Helicase-like transcri 90.7 0.087 1.9E-06 59.5 0.6 40 415-455 455-501 (674)
110 KOG1734 Predicted RING-contain 89.9 0.16 3.4E-06 51.3 1.6 42 413-454 223-281 (328)
111 COG2425 Uncharacterized protei 88.3 4.7 0.0001 43.6 11.4 133 114-289 269-405 (437)
112 KOG1493 Anaphase-promoting com 88.2 0.1 2.3E-06 43.3 -0.8 41 414-454 31-81 (84)
113 COG5222 Uncharacterized conser 88.0 0.22 4.8E-06 50.9 1.1 37 415-451 275-318 (427)
114 PF11793 FANCL_C: FANCL C-term 87.5 0.16 3.4E-06 41.1 -0.2 43 414-456 2-68 (70)
115 PF11789 zf-Nse: Zinc-finger o 87.2 0.29 6.3E-06 38.2 1.2 36 413-448 10-53 (57)
116 KOG1814 Predicted E3 ubiquitin 86.6 0.21 4.6E-06 52.9 0.1 29 414-442 184-216 (445)
117 PF10367 Vps39_2: Vacuolar sor 85.4 0.47 1E-05 39.9 1.6 31 412-442 76-109 (109)
118 PF03731 Ku_N: Ku70/Ku80 N-ter 84.5 18 0.00039 34.5 12.3 149 121-290 2-172 (224)
119 COG1240 ChlD Mg-chelatase subu 82.8 7.8 0.00017 39.2 9.1 145 114-294 74-224 (261)
120 KOG2932 E3 ubiquitin ligase in 82.5 0.53 1.2E-05 48.4 0.8 28 428-455 106-135 (389)
121 COG5219 Uncharacterized conser 81.6 0.49 1.1E-05 54.8 0.2 44 412-455 1467-1524(1525)
122 KOG4445 Uncharacterized conser 79.5 0.35 7.6E-06 49.5 -1.6 40 415-454 116-186 (368)
123 PF10272 Tmpp129: Putative tra 77.9 1.6 3.6E-05 45.9 2.7 25 431-455 311-352 (358)
124 KOG1428 Inhibitor of type V ad 77.2 0.82 1.8E-05 55.1 0.3 44 412-455 3484-3545(3738)
125 COG5194 APC11 Component of SCF 73.0 2.1 4.4E-05 36.1 1.5 40 415-454 32-81 (88)
126 PF03854 zf-P11: P-11 zinc fin 73.0 1.7 3.8E-05 33.1 1.0 42 416-458 4-50 (50)
127 PF05290 Baculo_IE-1: Baculovi 73.0 1.3 2.8E-05 40.5 0.4 41 415-455 81-133 (140)
128 KOG0298 DEAD box-containing he 72.3 0.67 1.4E-05 55.2 -2.0 41 412-452 1151-1197(1394)
129 PHA03096 p28-like protein; Pro 72.0 1.2 2.7E-05 45.4 0.0 29 415-443 179-216 (284)
130 smart00744 RINGv The RING-vari 71.9 2.2 4.7E-05 32.2 1.3 35 416-450 1-49 (49)
131 KOG2114 Vacuolar assembly/sort 71.9 1.7 3.7E-05 50.0 1.1 41 415-455 841-884 (933)
132 PF11775 CobT_C: Cobalamin bio 70.8 12 0.00027 36.9 6.6 52 239-292 133-187 (219)
133 KOG4362 Transcriptional regula 67.5 1.5 3.3E-05 49.5 -0.5 45 411-455 18-70 (684)
134 PF05883 Baculo_RING: Baculovi 67.1 1.5 3.2E-05 40.1 -0.5 30 414-443 26-65 (134)
135 KOG3579 Predicted E3 ubiquitin 66.5 3.6 7.8E-05 42.1 1.9 30 413-442 267-301 (352)
136 KOG2817 Predicted E3 ubiquitin 66.2 2.4 5.3E-05 44.9 0.7 40 414-453 334-384 (394)
137 KOG2353 L-type voltage-depende 57.8 1.1E+02 0.0023 37.2 12.1 147 119-299 226-382 (1104)
138 COG4548 NorD Nitric oxide redu 57.6 30 0.00065 38.6 7.0 166 120-317 448-619 (637)
139 PF02891 zf-MIZ: MIZ/SP-RING z 55.8 7.7 0.00017 29.4 1.7 38 415-452 3-50 (50)
140 TIGR00578 ku70 ATP-dependent D 55.3 1.7E+02 0.0036 32.9 12.7 152 120-291 12-182 (584)
141 KOG1952 Transcription factor N 52.3 14 0.00031 42.8 3.7 43 413-455 190-248 (950)
142 KOG1812 Predicted E3 ubiquitin 52.0 6.8 0.00015 41.6 1.1 29 414-442 146-179 (384)
143 PF07191 zinc-ribbons_6: zinc- 51.0 2.9 6.3E-05 34.3 -1.4 37 415-454 2-41 (70)
144 PF04710 Pellino: Pellino; In 50.4 5.2 0.00011 42.6 0.0 42 414-455 328-402 (416)
145 TIGR01651 CobT cobaltochelatas 47.3 46 0.00099 37.5 6.6 62 227-293 501-568 (600)
146 KOG0825 PHD Zn-finger protein 47.2 12 0.00025 43.3 2.0 40 415-454 100-154 (1134)
147 PF07975 C1_4: TFIIH C1-like d 46.4 15 0.00032 28.4 1.9 21 430-450 26-50 (51)
148 KOG2113 Predicted RNA binding 45.3 14 0.0003 38.5 2.1 44 414-457 343-390 (394)
149 KOG2068 MOT2 transcription fac 45.0 16 0.00034 38.1 2.5 41 415-455 250-299 (327)
150 PF04131 NanE: Putative N-acet 44.6 1.8E+02 0.0038 28.4 9.3 97 103-255 53-155 (192)
151 KOG3842 Adaptor protein Pellin 44.4 13 0.00028 38.8 1.7 43 413-455 340-415 (429)
152 PHA02825 LAP/PHD finger-like p 43.0 17 0.00037 34.3 2.2 43 412-454 6-59 (162)
153 KOG2034 Vacuolar sorting prote 39.9 11 0.00025 43.8 0.6 30 412-441 815-847 (911)
154 KOG3899 Uncharacterized conser 39.1 10 0.00022 39.1 0.0 25 431-455 325-366 (381)
155 KOG4465 Uncharacterized conser 37.9 2.8E+02 0.0061 29.9 10.2 140 120-298 429-569 (598)
156 PF06415 iPGM_N: BPG-independe 37.9 63 0.0014 32.1 5.3 56 225-291 13-71 (223)
157 PF00113 Enolase_C: Enolase, C 37.1 1.6E+02 0.0035 30.4 8.3 153 98-287 77-233 (295)
158 PLN00191 enolase 36.4 3.1E+02 0.0066 30.1 10.7 70 99-169 241-312 (457)
159 cd01468 trunk_domain trunk dom 36.4 3E+02 0.0065 26.7 9.9 157 120-301 5-210 (239)
160 PF04811 Sec23_trunk: Sec23/Se 35.5 4.2E+02 0.0091 25.6 12.9 154 120-293 5-202 (243)
161 PF02601 Exonuc_VII_L: Exonucl 35.4 1E+02 0.0022 31.3 6.6 16 201-216 27-42 (319)
162 KOG1940 Zn-finger protein [Gen 34.1 10 0.00022 38.7 -0.8 35 417-451 161-204 (276)
163 PF14871 GHL6: Hypothetical gl 33.8 1.4E+02 0.003 27.0 6.5 69 102-174 44-129 (132)
164 KOG1941 Acetylcholine receptor 33.5 11 0.00024 40.2 -0.7 39 413-451 364-413 (518)
165 cd03313 enolase Enolase: Enola 33.1 4.6E+02 0.0099 28.0 11.3 65 99-169 211-278 (408)
166 COG1488 PncB Nicotinic acid ph 31.5 1.7E+02 0.0037 31.5 7.7 73 201-292 248-324 (405)
167 COG3959 Transketolase, N-termi 31.2 49 0.0011 33.2 3.3 69 203-284 89-171 (243)
168 KOG2807 RNA polymerase II tran 31.1 31 0.00068 36.1 2.1 146 113-292 56-203 (378)
169 COG4306 Uncharacterized protei 31.1 18 0.00038 33.1 0.2 23 434-456 29-52 (160)
170 KOG3970 Predicted E3 ubiquitin 30.7 21 0.00046 35.6 0.7 41 415-455 51-106 (299)
171 KOG3113 Uncharacterized conser 30.2 30 0.00064 35.1 1.6 44 412-455 109-159 (293)
172 COG2816 NPY1 NTP pyrophosphohy 30.0 23 0.0005 36.3 0.9 25 430-454 108-140 (279)
173 PF09297 zf-NADH-PPase: NADH p 29.8 13 0.00028 25.3 -0.6 20 432-451 2-29 (32)
174 PF04216 FdhE: Protein involve 29.2 13 0.00029 37.5 -1.0 43 413-455 171-223 (290)
175 COG5109 Uncharacterized conser 29.2 22 0.00048 37.1 0.6 40 413-452 335-385 (396)
176 KOG0183 20S proteasome, regula 29.1 2.8E+02 0.0061 27.7 8.0 38 91-140 92-129 (249)
177 PF04084 ORC2: Origin recognit 27.9 3.4E+02 0.0075 28.2 9.1 109 173-294 56-179 (326)
178 KOG3161 Predicted E3 ubiquitin 27.8 25 0.00053 39.9 0.7 23 427-450 29-53 (861)
179 KOG3799 Rab3 effector RIM1 and 27.6 24 0.00051 32.7 0.4 38 412-452 63-116 (169)
180 PF14569 zf-UDP: Zinc-binding 27.4 38 0.00083 28.4 1.6 41 414-454 9-62 (80)
181 PRK03564 formate dehydrogenase 27.2 53 0.0011 34.2 2.9 39 413-451 186-234 (309)
182 KOG2807 RNA polymerase II tran 26.8 3.9E+02 0.0085 28.3 9.0 37 415-451 331-375 (378)
183 PF02601 Exonuc_VII_L: Exonucl 25.8 2.9E+02 0.0063 28.0 8.0 20 269-292 97-116 (319)
184 PF10083 DUF2321: Uncharacteri 25.4 20 0.00044 33.7 -0.4 25 432-456 27-52 (158)
185 TIGR01562 FdhE formate dehydro 25.4 39 0.00085 35.0 1.6 40 413-452 183-233 (305)
186 PLN02189 cellulose synthase 24.5 50 0.0011 39.5 2.4 40 415-454 35-87 (1040)
187 PF02318 FYVE_2: FYVE-type zin 24.5 21 0.00046 31.4 -0.4 38 415-452 55-103 (118)
188 KOG2113 Predicted RNA binding 24.2 59 0.0013 34.1 2.6 45 412-456 134-185 (394)
189 KOG3268 Predicted E3 ubiquitin 24.2 30 0.00064 33.5 0.4 46 412-457 163-231 (234)
190 PF01363 FYVE: FYVE zinc finge 24.0 29 0.00062 27.2 0.3 29 413-441 8-41 (69)
191 PLN02436 cellulose synthase A 23.9 52 0.0011 39.5 2.4 40 415-454 37-89 (1094)
192 KOG2930 SCF ubiquitin ligase, 22.9 38 0.00082 30.0 0.8 23 430-452 80-106 (114)
193 PRK00286 xseA exodeoxyribonucl 22.7 2E+02 0.0042 30.8 6.3 36 268-303 178-213 (438)
194 KOG3039 Uncharacterized conser 22.7 48 0.0011 33.6 1.6 32 410-441 39-71 (303)
195 PTZ00081 enolase; Provisional 22.5 9.6E+02 0.021 26.1 11.5 66 100-169 227-298 (439)
196 PLN02400 cellulose synthase 22.5 59 0.0013 39.1 2.5 40 415-454 37-89 (1085)
197 PRK13886 conjugal transfer pro 22.1 3.3E+02 0.0071 27.3 7.3 90 199-303 67-174 (241)
198 PF10571 UPF0547: Uncharacteri 21.6 50 0.0011 21.9 1.0 20 416-435 2-24 (26)
199 TIGR00622 ssl1 transcription f 21.6 82 0.0018 28.2 2.6 36 415-450 56-110 (112)
200 COG3864 Uncharacterized protei 21.1 86 0.0019 33.0 3.0 51 218-292 324-374 (396)
201 PF05502 Dynactin_p62: Dynacti 21.0 48 0.001 36.4 1.3 14 413-426 25-38 (483)
202 PF10235 Cript: Microtubule-as 20.3 53 0.0012 28.2 1.2 37 414-454 44-80 (90)
203 PF10217 DUF2039: Uncharacteri 20.3 30 0.00065 29.9 -0.3 20 433-452 71-90 (92)
204 PLN02638 cellulose synthase A 20.1 1.1E+02 0.0024 36.9 4.0 40 415-454 18-70 (1079)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-78 Score=636.14 Aligned_cols=255 Identities=47% Similarity=0.711 Sum_probs=237.5
Q ss_pred HhhhcccccccccccHHHHHHHHHhcCcceeceEEEEecCCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhcccc
Q 012592 89 KLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSS 167 (460)
Q Consensus 89 ~~~~~~~~i~~~y~~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~-~~N~Yq~AI~~Ig~il~~ 167 (460)
.++.++..+.++|+++++++-++..+|++++||+||||||+||+|++.+ .|||||++ .+|+||+||++||+||++
T Consensus 256 ~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~----sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ 331 (529)
T KOG1327|consen 256 SYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNP----SSLHYIDPHQPNPYEQAIRSVGETLQD 331 (529)
T ss_pred cccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCC----CcceecCCCCCCHHHHHHHHHhhhhcc
Confidence 3566899999999999999999999999999999999999999998754 59999996 789999999999999999
Q ss_pred cCCCCccceEeeCCCCCC---CCc--ccccCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC---
Q 012592 168 FDEDNLIPCFGFGDASTH---DQE--VFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--- 239 (460)
Q Consensus 168 yD~D~~ip~fGFGa~~~~---~~~--vF~~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~--- 239 (460)
||+||+||+|||||+.+. .++ +|+|+|.|++|+|++|||+||++++|+|+|+|||+|||||++|+++|+++.
T Consensus 332 ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~ 411 (529)
T KOG1327|consen 332 YDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTA 411 (529)
T ss_pred cCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCC
Confidence 999999999999999664 344 456778999999999999999999999999999999999999999999986
Q ss_pred CceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCCCccccccCCCCCc-------cccce
Q 012592 240 GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPA-------RAFDN 312 (460)
Q Consensus 240 ~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd~~~~-------R~~Dn 312 (460)
++||||||||||+||| |++|++|||.||++|||||||||||+||++|++||++++. |.|||
T Consensus 412 ~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~ 479 (529)
T KOG1327|consen 412 GQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDN 479 (529)
T ss_pred cceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCcccccccccccccc
Confidence 8999999999999997 9999999999999999999999999999999999998776 78999
Q ss_pred eeeeccccccccccccchhHHHHHHHHHHHhHHHHHHHHHh-cccccC
Q 012592 313 FQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEF-NILGAQ 359 (460)
Q Consensus 313 vqFV~f~~~~~~~~~~~~~~~~la~~~L~EIP~Q~~~~~~l-~~l~~r 359 (460)
||||+|++|+.++.+.+.++++||+.+|||||+||++||++ |++.++
T Consensus 480 vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~~ 527 (529)
T KOG1327|consen 480 VQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPKP 527 (529)
T ss_pred eEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCCC
Confidence 99999999999888888899999999999999999999999 555543
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=1.1e-70 Score=540.26 Aligned_cols=223 Identities=54% Similarity=0.894 Sum_probs=203.5
Q ss_pred ccccHHHHHHHHHhcCcceeceEEEEecCCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhcccccCCCCccceEe
Q 012592 100 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFG 178 (460)
Q Consensus 100 ~y~~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~-~~N~Yq~AI~~Ig~il~~yD~D~~ip~fG 178 (460)
.|+||||+ ++|+| +||+||||||+||||+++ ++||||+++ .+|+||+||++||+||+.||+|++||+||
T Consensus 19 ~~tFldy~-----~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYR-----SAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHH-----hCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 89999999 89999 599999999999999864 589999976 58999999999999999999999999999
Q ss_pred eCCCCCCCCccccc---CCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCcc
Q 012592 179 FGDASTHDQEVFSF---YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQV 253 (460)
Q Consensus 179 FGa~~~~~~~vF~~---~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~--~Y~VLlIiTDG~i 253 (460)
||++.+++..++++ ++++|+|.|++|||++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 99998766555444 588999999999999999999999999999999999999999987643 4999999999999
Q ss_pred ccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCCCccccccCC-------CCCccccceeeeecccccccccc
Q 012592 254 TRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD-------NIPARAFDNFQFVNFTEIMSKNV 326 (460)
Q Consensus 254 ~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd-------~~~~R~~DnvqFV~f~~~~~~~~ 326 (460)
+| +++|++||++||++||||||||||+++|+.|++||+ +++.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 97 999999999999999999999999999999999998 4567889999999999997431
Q ss_pred ccchhHHHHHHHHHHHhHHHH
Q 012592 327 DRSRKEAEFALAALMEIPSQY 347 (460)
Q Consensus 327 ~~~~~~~~la~~~L~EIP~Q~ 347 (460)
..++.+||+++|+|||+||
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1357899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=3.5e-48 Score=352.74 Aligned_cols=137 Identities=47% Similarity=0.882 Sum_probs=129.1
Q ss_pred CccccCCC-CCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCC---CcccccC--CCCCccCCHHHHHHHHHHhcCcc
Q 012592 143 SLHHIGDD-QNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHD---QEVFSFY--PDEKFCNGFEEVLRRYRELVPHL 216 (460)
Q Consensus 143 SLH~i~~~-~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~---~~vF~~~--~~~~~c~G~egvl~~Yr~~l~~v 216 (460)
||||+++. +|+||+||++||++|++||+|++||+|||||+.+.+ +++|+|+ +++++|.|++|||++|++++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 89999984 899999999999999999999999999999998765 4568776 57899999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHHh---cCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecC
Q 012592 217 RLAGPTSFAPIIEMAITIVEH---SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVG 291 (460)
Q Consensus 217 ~LsGPT~FapVI~~a~~~~~~---s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVG 291 (460)
+|+|||+|+|||++|++++++ .+++|+||||||||+|+| |++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999997 999999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.98 E-value=1.6e-31 Score=253.80 Aligned_cols=197 Identities=22% Similarity=0.334 Sum_probs=166.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
..+.+.||-|+|+. .++ +....|.+++++..+...||+|+.+++|.||....+..+| .
T Consensus 2 ArV~LVLD~SGSM~----------~~y----k~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t 59 (200)
T PF10138_consen 2 ARVYLVLDISGSMR----------PLY----KDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------T 59 (200)
T ss_pred cEEEEEEeCCCCCc----------hhh----hCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------C
Confidence 36899999999994 222 2467999999999999999999999999999987665554 2
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc-CC-ceEEEEEEeCCccccCCCcccCccchhHHHHHHHHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-GG-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 276 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s-~~-~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv 276 (460)
...+++.++.....++.+...|-|+++|||++|++.+.++ +. .....|+||||.++| .+++.++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~ 127 (200)
T PF10138_consen 60 LDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIR 127 (200)
T ss_pred HHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHH
Confidence 3466777755444444456557799999999999998754 22 356678999999996 899999999
Q ss_pred HhcCCCeEEEEEecCCCCCccccccCCCCCccccceeeeeccccccccccccchhHHHHHHHHHHHhHHHHHHHHHhccc
Q 012592 277 KASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNIL 356 (460)
Q Consensus 277 ~AS~~PLSIIiVGVGd~~f~~M~~lDd~~~~R~~DnvqFV~f~~~~~~~~~~~~~~~~la~~~L~EIP~Q~~~~~~l~~l 356 (460)
+||++||+|+|||||+.+|+.+++||+ +.+|.+||+.||.+.++. ..++++|++.+|.|+|.|+++++.+|+|
T Consensus 128 ~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~------~lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 128 EASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDID------ELSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred hccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCcc------cCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 799999999999999884 2478999999999999999999999986
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.80 E-value=2.5e-19 Score=168.85 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=127.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
+++++||.|+||.+.. .+.++| ..+.+++++..++.++..||.|+...+|+||.... ++. +
T Consensus 4 dvv~~ID~SgSM~~~~----~~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~-------~ 64 (199)
T cd01457 4 DYTLLIDKSGSMAEAD----EAKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDN-------V 64 (199)
T ss_pred CEEEEEECCCcCCCCC----CCCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCC-------c
Confidence 6899999999998542 123444 46899999999999999999999777777665421 111 1
Q ss_pred CCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc--C----CceEEEEEEeCCccccCCCcccCccchhHHHHHH
Q 012592 200 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--G----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 273 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s--~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~ 273 (460)
. .+++.++|.+ +...|+|++++.|+.+++...+. + ..+.++||||||..++ .+++.+
T Consensus 65 ~-~~~v~~~~~~----~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAE----NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 5666666654 34469999999999998543221 1 1278889999999886 678899
Q ss_pred HHHHhcCC-----CeEEEEEecCCC--CCccccccCCCC--Cccccceeeeeccccccc
Q 012592 274 AIVKASEY-----PLSIILVGVGDG--PWDMMREFDDNI--PARAFDNFQFVNFTEIMS 323 (460)
Q Consensus 274 aIv~AS~~-----PLSIIiVGVGd~--~f~~M~~lDd~~--~~R~~DnvqFV~f~~~~~ 323 (460)
+|++|++. +|.|.|||||++ .+..|++||+.+ ..+.||||+||+|.++..
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~ 186 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMER 186 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhc
Confidence 99999863 888999999885 799999999853 346789999999999854
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.81 E-value=3.1e-08 Score=88.48 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=108.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||.|.|+. ......+...+..++..+.. +..|-+++|++.... .+++.
T Consensus 2 ~~v~l~vD~S~SM~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~---~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV---LFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE---EEccc--
Confidence 47899999999994 13455555555555555555 889999999985322 22222
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc--C---CceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--G---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s--~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
...+.+.+++......+. ..|.|.+...|+++++.+++. . +...+++|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 356778888777665543 568899999999999987521 1 12579999999998851 45
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC-CCccccccCCCCCc
Q 012592 271 TVEAIVKASEYPLSIILVGVGDG-PWDMMREFDDNIPA 307 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~-~f~~M~~lDd~~~~ 307 (460)
+.+++..+.+..+.|++||+|+. +.+.|+.|.....+
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 66777777777899999999998 89999999875443
No 7
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.78 E-value=1.3e-07 Score=85.29 Aligned_cols=147 Identities=19% Similarity=0.267 Sum_probs=103.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.++++.+|.|+|+.. ...+.|...+..++..+..+..|-+++|+...... +.. ..
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~---~~~----~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEF---SPS----SV 57 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceee---cCc----ce
Confidence 389999999999951 23667777788888888888889999999864321 110 01
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHh
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
..+.+.+ +...+.+..+...|-|++...|+.+.+..+...+.--++++||||...+ .+++.+++.++
T Consensus 58 ~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 1122222 2233444556668899999999999888765333457889999999764 46677888887
Q ss_pred cCCCeEEEEEecCC-CCCccccccCC
Q 012592 279 SEYPLSIILVGVGD-GPWDMMREFDD 303 (460)
Q Consensus 279 S~~PLSIIiVGVGd-~~f~~M~~lDd 303 (460)
.+..+.|..||+|. .+...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 77788999999996 45666666644
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.69 E-value=3.8e-09 Score=79.29 Aligned_cols=44 Identities=41% Similarity=1.089 Sum_probs=35.9
Q ss_pred CCCcccccccCCCccee-CCCCc-cchhhhhcC----CCCCccccccccc
Q 012592 413 DNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDL----DLCPICRSFIQTR 456 (460)
Q Consensus 413 e~~~CpICl~~~kdvv~-~CGH~-fC~~Ci~~l----~~CPiCR~~I~~~ 456 (460)
++..|.||++...++++ +|||. ||..|+.++ ..||+||++|+.+
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35689999999999554 99999 999999887 6999999998753
No 9
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.63 E-value=3.2e-07 Score=85.78 Aligned_cols=147 Identities=14% Similarity=0.240 Sum_probs=99.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCC--
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDE-- 196 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~-- 196 (460)
.++++.||.|+|+.. +..+.|-..+..++..+..+..|-++.|+..... ++++..+.
T Consensus 14 ~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~---~~~~~~~~~~ 72 (190)
T cd01463 14 KDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNP---VVPCFNDTLV 72 (190)
T ss_pred ceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeE---EeeecccceE
Confidence 689999999999951 3456666667777788888889999999987542 22222110
Q ss_pred -CccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHh---c------CCceEEEEEEeCCccccCCCcccCccch
Q 012592 197 -KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH---S------GGQYHVLVIIADGQVTRSVDTEHGQLSS 266 (460)
Q Consensus 197 -~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~---s------~~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 266 (460)
......+.++ +.+..++..|.|++...|+.|.+..++ . ...-.++++||||..++
T Consensus 73 ~~~~~~~~~~~----~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 137 (190)
T cd01463 73 QATTSNKKVLK----EALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN----------- 137 (190)
T ss_pred ecCHHHHHHHH----HHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-----------
Confidence 0011233333 345667788999999999999887765 1 12236789999999764
Q ss_pred hHHHHHHHHHHh--cCCCeEEEEEecCCC--CCccccccC
Q 012592 267 QEKKTVEAIVKA--SEYPLSIILVGVGDG--PWDMMREFD 302 (460)
Q Consensus 267 ~~~~Ti~aIv~A--S~~PLSIIiVGVGd~--~f~~M~~lD 302 (460)
..+.++++... .+.++-|..||||.+ +...|++|=
T Consensus 138 -~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 138 -YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred -HhHHHHHhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 34455554422 235899999999975 577777664
No 10
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4e-09 Score=81.08 Aligned_cols=46 Identities=46% Similarity=1.059 Sum_probs=39.9
Q ss_pred CcccccccCCCcce-eCCCCcc-chhhhhcCC-----CCCccccccccccccC
Q 012592 415 HVCPICLTDPKDMA-FGCGHQT-CCGCGQDLD-----LCPICRSFIQTRIKLY 460 (460)
Q Consensus 415 ~~CpICl~~~kdvv-~~CGH~f-C~~Ci~~l~-----~CPiCR~~I~~~irly 460 (460)
.+|-||++.+.|.+ .-|||++ |.+|+.+++ .||+||.+|+.+||.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 58999999999955 4999994 669998764 6999999999999877
No 11
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.57 E-value=9.9e-07 Score=76.23 Aligned_cols=146 Identities=17% Similarity=0.342 Sum_probs=98.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~~ 196 (460)
++++.||.|+|+. ....+.+...+..++..+.. ...+-+++|+.... .++.+...
T Consensus 2 ~v~~viD~S~Sm~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~---~~~~~~~~- 59 (161)
T cd00198 2 DIVFLLDVSGSMG------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNAR---VVLPLTTD- 59 (161)
T ss_pred cEEEEEeCCCCcC------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccc---eeeccccc-
Confidence 6899999999982 24566666666666666665 77899999997422 12222211
Q ss_pred CccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCccchhHHHHHHH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA 274 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~a 274 (460)
...+.+.+.-.. +.. ...|.|.+...++.+.+...+. .....++++||||..++. .....+.
T Consensus 60 ---~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 60 ---TDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred ---CCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 233343333222 221 3678999999999999998764 456789999999987751 1234455
Q ss_pred HHHhcCCCeEEEEEecCC-CCCccccccCC
Q 012592 275 IVKASEYPLSIILVGVGD-GPWDMMREFDD 303 (460)
Q Consensus 275 Iv~AS~~PLSIIiVGVGd-~~f~~M~~lDd 303 (460)
+..+....+.|.+||+|+ .+-..++.|+.
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhc
Confidence 555666699999999998 66666666665
No 12
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.55 E-value=7.1e-07 Score=82.71 Aligned_cols=169 Identities=14% Similarity=0.172 Sum_probs=106.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
+++++.||-|+|++. .|-++++...+..+++.+. ++-.+-++.|+.... .+++|...
T Consensus 1 ~Dv~~vlD~SgSm~~-----------------~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGSIGY-----------------SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCCccc-----------------hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc
Confidence 368999999999852 1235667777777777664 445899999997542 23444332
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCccccCCCcccCccchhHHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 271 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 271 (460)
. -...+.+++.-+.+......+|-|+++..++.|.+...+. ...-.+++|||||..++ ..++
T Consensus 61 ~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~ 126 (186)
T cd01471 61 N--STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRT 126 (186)
T ss_pred c--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------Ccch
Confidence 1 1122332222223333345678999999999999887652 12235779999999765 2234
Q ss_pred HHHHHHhcCCCeEEEEEecCC-CCCccccccCCCC-Cccccceeeeeccccc
Q 012592 272 VEAIVKASEYPLSIILVGVGD-GPWDMMREFDDNI-PARAFDNFQFVNFTEI 321 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd-~~f~~M~~lDd~~-~~R~~DnvqFV~f~~~ 321 (460)
+++..++-+.++-|.+||||. .+.+.|+.|-+.. ..-..++.-+.+|+++
T Consensus 127 ~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~ 178 (186)
T cd01471 127 LKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEV 178 (186)
T ss_pred hHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHH
Confidence 444455556689999999997 4777777776532 1112366666666665
No 13
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.49 E-value=6.3e-07 Score=82.72 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=95.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
+++++.||.|+|+... . ...-.+|+..+...|...+ ++..+-++.|+.... .++++...
T Consensus 4 ~~v~~llD~SgSM~~~--------~-------~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~~ 65 (176)
T cd01464 4 LPIYLLLDTSGSMAGE--------P-------IEALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTPL 65 (176)
T ss_pred CCEEEEEECCCCCCCh--------H-------HHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCccH
Confidence 6899999999999521 1 1233455555555554432 345799999998542 23344321
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCc---------eEEEEEEeCCccccCCCcccCccch
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQ---------YHVLVIIADGQVTRSVDTEHGQLSS 266 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~---------Y~VLlIiTDG~i~d~~d~~~~~~~~ 266 (460)
.. .....+...|-|++...+++|.+........ -.++++||||+.+|
T Consensus 66 -------~~------~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 121 (176)
T cd01464 66 -------ES------FQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD----------- 121 (176)
T ss_pred -------Hh------cCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc-----------
Confidence 11 1234566789999999999999887543211 24789999999876
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEecCC-CCCccccccCCC
Q 012592 267 QEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFDDN 304 (460)
Q Consensus 267 ~~~~Ti~aIv~AS~~PLSIIiVGVGd-~~f~~M~~lDd~ 304 (460)
+.....+++.++-...+-|..||||. .+.+.|+++-+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 122 DLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred hHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 23444577877777789999999995 677777777653
No 14
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.44 E-value=1.6e-06 Score=76.69 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=95.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhc---ccccCCCCccceEeeCCCCCCCCcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKT---LSSFDEDNLIPCFGFGDASTHDQEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~i---l~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~ 196 (460)
++++.+|.|+|+.. ..++.+...+..+ +...+.+-.+-++.|++... .++.+....
T Consensus 2 di~~llD~S~Sm~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~---~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSESVGP------------------ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR---VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce---EEEECCCCC
Confidence 68899999999951 1344444444444 44445578999999998643 233443221
Q ss_pred CccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCccccCCCcccCccchhHHHHH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 272 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti 272 (460)
..+.+++......... .|-|++...++.+.+...+.. ..-.++++||||..++. .+..
T Consensus 61 ----~~~~~~~~i~~~~~~~--~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~ 122 (161)
T cd01450 61 ----SKDDLLKAVKNLKYLG--GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPK 122 (161)
T ss_pred ----CHHHHHHHHHhcccCC--CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchH
Confidence 3455555444322111 137999999999999887653 56689999999988751 1334
Q ss_pred HHHHHhcCCCeEEEEEecCCCCCccccccCC
Q 012592 273 EAIVKASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 273 ~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
+++.+..+..+-|+.||+|..+.+.|++|-+
T Consensus 123 ~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 123 EAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 4444444558999999999988888887754
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.42 E-value=1e-07 Score=90.91 Aligned_cols=46 Identities=30% Similarity=0.761 Sum_probs=38.2
Q ss_pred CCCCCCcccccccCCCc-ceeCCCCccchhhhhcC--------------------CCCCcccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL--------------------DLCPICRSFIQT 455 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l--------------------~~CPiCR~~I~~ 455 (460)
...++..|+||++..++ ++++|||.||..|+.+| ..||+||..+..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34466899999999999 55699999999999753 379999999864
No 16
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.42 E-value=2.3e-06 Score=77.70 Aligned_cols=141 Identities=14% Similarity=0.257 Sum_probs=93.2
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
++++.||.|+|+.. +..+.|-.++..++..+.++..+-+++|+..... ++++.+.+.
T Consensus 2 ~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~~-- 58 (155)
T cd01466 2 DLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMTA-- 58 (155)
T ss_pred cEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccCH--
Confidence 68999999999951 2345555555566666666667999999986432 233332111
Q ss_pred CCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHH
Q 012592 200 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 277 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~ 277 (460)
.+-+.+ .+.+..+...|-|+...-++.+.+..++.. +.-.++++||||..++ . .++..
T Consensus 59 ~~~~~~----~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~ 118 (155)
T cd01466 59 KGKRSA----KRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLR 118 (155)
T ss_pred HHHHHH----HHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhc
Confidence 112222 334444667888999999999999876542 2346889999998764 1 23344
Q ss_pred hcCCCeEEEEEecC-CCCCccccccCC
Q 012592 278 ASEYPLSIILVGVG-DGPWDMMREFDD 303 (460)
Q Consensus 278 AS~~PLSIIiVGVG-d~~f~~M~~lDd 303 (460)
+.+.++.|..||+| +.+.+.|+++=+
T Consensus 119 ~~~~~v~v~~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 119 ADNAPIPIHTFGLGASHDPALLAFIAE 145 (155)
T ss_pred ccCCCceEEEEecCCCCCHHHHHHHHh
Confidence 56679999999999 456666766643
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.38 E-value=8.1e-08 Score=70.26 Aligned_cols=33 Identities=48% Similarity=1.084 Sum_probs=25.4
Q ss_pred ccccccCCCc-ceeCCCCccchhhhhcC--------CCCCcc
Q 012592 417 CPICLTDPKD-MAFGCGHQTCCGCGQDL--------DLCPIC 449 (460)
Q Consensus 417 CpICl~~~kd-vv~~CGH~fC~~Ci~~l--------~~CPiC 449 (460)
|+||++.+++ ++++|||.||..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 77899999999999754 268887
No 18
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.2e-07 Score=97.02 Aligned_cols=48 Identities=42% Similarity=1.037 Sum_probs=43.4
Q ss_pred CCCcccccccCCCccee-CCCCccch-hhhhcCCCCCccccccccccccC
Q 012592 413 DNHVCPICLTDPKDMAF-GCGHQTCC-GCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 413 e~~~CpICl~~~kdvv~-~CGH~fC~-~Ci~~l~~CPiCR~~I~~~irly 460 (460)
....|.||++.+++.+| +|||.+|| .|.+.+..||+||+.|...+++|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence 34689999999999665 99999998 99999999999999999998877
No 19
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.35 E-value=8.7e-06 Score=74.90 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=94.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC-CCccceEeeCCCCCCC--CcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHD--QEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~-D~~ip~fGFGa~~~~~--~~vF~~~~~~ 196 (460)
.+.+.||.|+|+.. .+..+.|-..+..++...+. +-.+-+|+|+...+.. ..++...+-+
T Consensus 2 ~v~~llD~SgSM~~-----------------~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRS-----------------DRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCC-----------------CcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 57899999999952 13444444444444444443 5579999998763111 1122111101
Q ss_pred CccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 276 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv 276 (460)
. . +..+.++.+..+...|-|.++..|+.+.+...+....--++++||||..++. +...+++. ..++.++++.
T Consensus 65 ~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 E---S---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVI 136 (174)
T ss_pred c---c---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHH
Confidence 0 0 1112233444566678899999999999988765444568899999998763 22223331 2445566688
Q ss_pred HhcCCCeEEEEEecCCCC
Q 012592 277 KASEYPLSIILVGVGDGP 294 (460)
Q Consensus 277 ~AS~~PLSIIiVGVGd~~ 294 (460)
+|-+..+.+..||||+..
T Consensus 137 ~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 137 EARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHhCCcEEEEEEecCcc
Confidence 888889999999999865
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.6e-07 Score=91.30 Aligned_cols=49 Identities=35% Similarity=0.735 Sum_probs=40.7
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC-------CCCCccccccc--cccccC
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQ--TRIKLY 460 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-------~~CPiCR~~I~--~~irly 460 (460)
.....|.|||+..+| |+..|||.||..|+-+| +.||+|+..++ ++|.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 345899999999999 56699999999999877 37999998875 456665
No 21
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.33 E-value=4.5e-06 Score=74.19 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=96.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
+++|.||-|+|+.+.+ ...+..++|...+..++..+..+ .|-+++|+.... .++.+ .
T Consensus 1 dvv~v~D~SgSM~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~---~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYD-------------GNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSR---TLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTTT-------------SSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCE---EEEEE------E
T ss_pred CEEEEEECCcccCCCC-------------CCCcHHHHHHHHHHHHHHHCCCC-EEEEEEeccccc---ccccc------c
Confidence 5899999999996431 12578889999999999988755 999999998531 12333 3
Q ss_pred CCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhc
Q 012592 200 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKAS 279 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS 279 (460)
.+.+.+.++..+..+.....|.|.+...|+.|.++.......=-++|+||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 46777777777666666668899999999999999887653446668899997553 2223556667
Q ss_pred CCCeEEEEEecCCCCC
Q 012592 280 EYPLSIILVGVGDGPW 295 (460)
Q Consensus 280 ~~PLSIIiVGVGd~~f 295 (460)
+..+.|.+||+|...-
T Consensus 124 ~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSD 139 (172)
T ss_dssp CTTEEEEEEEES-TT-
T ss_pred HcCCeEEEEEECCCcc
Confidence 8889999999998654
No 22
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.2e-08 Score=95.85 Aligned_cols=48 Identities=38% Similarity=1.134 Sum_probs=43.2
Q ss_pred CCCcccccccCCCcce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 012592 413 DNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 413 e~~~CpICl~~~kdvv-~~CGH~-fC~~Ci~~l~~CPiCR~~I~~~irly 460 (460)
...+|.||++.+.|.+ ++|||. .|..|+.++..||+||+.|.+++|+|
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence 3679999999999955 599999 67799999999999999999999887
No 23
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.29 E-value=2.1e-05 Score=70.97 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=97.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
+|+++.+|.|.|+.. ...+.|...+..++..+..+..+-++.|+.... .++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~---~~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAE---TVLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc---EEecCccc---
Confidence 489999999999941 126777777778888888888999999998632 22232221
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCccchhHHHHHHHHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 276 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv 276 (460)
...+.+++ .+..++..|.|++...++.+.+.+++.. ..--.+++||||..++.. .+.++..+++.
T Consensus 57 -~~~~~l~~----~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAILA----AIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHHH----HHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 12233333 3334556789999999999998886542 222557899999876411 12355556666
Q ss_pred HhcCCCeEEEEEecCCC-CCcccccc
Q 012592 277 KASEYPLSIILVGVGDG-PWDMMREF 301 (460)
Q Consensus 277 ~AS~~PLSIIiVGVGd~-~f~~M~~l 301 (460)
++.+..+-|..||+|+. +...|+++
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~i 149 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAI 149 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHH
Confidence 66667888999999943 44445544
No 24
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2e-07 Score=87.52 Aligned_cols=47 Identities=36% Similarity=0.909 Sum_probs=37.5
Q ss_pred CCcccccccCCCc-c--eeCCCCccchhhhhcC----CCCCccccccccc--cccC
Q 012592 414 NHVCPICLTDPKD-M--AFGCGHQTCCGCGQDL----DLCPICRSFIQTR--IKLY 460 (460)
Q Consensus 414 ~~~CpICl~~~kd-v--v~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~--irly 460 (460)
...|||||+-... + ...|||.||..|+++. ..||+||..|+.+ +++|
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3789999998776 3 3599999999999865 4899999988754 4554
No 25
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.27 E-value=2.9e-07 Score=90.61 Aligned_cols=46 Identities=30% Similarity=0.730 Sum_probs=36.8
Q ss_pred CCCcccccccCCCc--------cee-CCCCccchhhhhcC----CCCCccccccccccc
Q 012592 413 DNHVCPICLTDPKD--------MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTRIK 458 (460)
Q Consensus 413 e~~~CpICl~~~kd--------vv~-~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ir 458 (460)
++..|+||++...+ .++ +|||.||.+|+..| ..||+||.++..+++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 45799999997543 133 89999999999876 389999999887654
No 26
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3e-07 Score=91.88 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=38.1
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcCC----CCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD----LCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l~----~CPiCR~~I~~ 455 (460)
+....|.+|++...+ ...||||.||..|+..|. .||+||++++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 345799999999999 667999999999998773 79999998864
No 27
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.2e-07 Score=93.12 Aligned_cols=49 Identities=37% Similarity=0.979 Sum_probs=40.4
Q ss_pred CCCCcccccccCCCc-ceeCCCCcc-chhhhhcCC----CCCccccccccccccC
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQT-CCGCGQDLD----LCPICRSFIQTRIKLY 460 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~f-C~~Ci~~l~----~CPiCR~~I~~~irly 460 (460)
+...+|.||++..+| +++||.|.+ |..|++.+. +||+||++|...+.+|
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 335799999999999 556999995 559998764 6999999998876654
No 28
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.18 E-value=1.1e-05 Score=76.34 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=95.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCC--C-cccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHD--Q-EVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~--~-~vF~~~~~ 195 (460)
.++++.||.|+|+.... ....+..+.|...+..++..+.++..|-++.|+...... . .+++..+-
T Consensus 21 ~~vv~vlD~SgSM~~~~------------~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREVD------------GGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCCC------------CCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 58999999999996310 012356667777777777778778899999999854321 1 11111110
Q ss_pred CCccCCHH-HHHHHHHHhcCcce-ecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHH
Q 012592 196 EKFCNGFE-EVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 273 (460)
Q Consensus 196 ~~~c~G~e-gvl~~Yr~~l~~v~-LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~ 273 (460)
-....+.. .-.+...+.+..++ ..|-|+....|+.+.+..+ .+.-..+|+||||..++.- +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~---------~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGP---------DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCC---------CHHHHHH
Confidence 00111210 11222233455565 7788999999999988875 2333678999999876411 1223334
Q ss_pred HHHHh--cCCCeEEEEEecCCC-CCcccccc
Q 012592 274 AIVKA--SEYPLSIILVGVGDG-PWDMMREF 301 (460)
Q Consensus 274 aIv~A--S~~PLSIIiVGVGd~-~f~~M~~l 301 (460)
.+.+. ..-++.|.+||||.. +-+.|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44432 124788999999975 33444433
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.4e-06 Score=92.75 Aligned_cols=42 Identities=43% Similarity=0.839 Sum_probs=35.3
Q ss_pred CCcccccccCCCcc-eeCCCCccchhhhhc---------CCCCCcccccccc
Q 012592 414 NHVCPICLTDPKDM-AFGCGHQTCCGCGQD---------LDLCPICRSFIQT 455 (460)
Q Consensus 414 ~~~CpICl~~~kdv-v~~CGH~fC~~Ci~~---------l~~CPiCR~~I~~ 455 (460)
+..||||++.+.-. ...|||.||+.|+-. +..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67999999998874 448999999999952 3589999999876
No 30
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.13 E-value=2.7e-05 Score=73.16 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=91.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~---~yD~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
+|+++.||.|.|++. +.++++...+..++. .+..+-.+-++.|+.... .+|++...
T Consensus 1 ~di~~vlD~SgSM~~------------------~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~---~~~~~~~~ 59 (198)
T cd01470 1 LNIYIALDASDSIGE------------------EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPK---EIVSIRDF 59 (198)
T ss_pred CcEEEEEECCCCccH------------------HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCce---EEEecccC
Confidence 479999999999951 234445444444444 444456799999988643 23444321
Q ss_pred CCccCCHHHHHHHHHHhcCcce-ecCCCChHHHHHHHHHHHHhc----C----CceEEEEEEeCCccccCCCcccCccch
Q 012592 196 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHS----G----GQYHVLVIIADGQVTRSVDTEHGQLSS 266 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapVI~~a~~~~~~s----~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 266 (460)
.-...+.++++-...-.... ..|-|++...|+++.+..... . ..-.++++||||+-++. . +
T Consensus 60 --~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g------~-~- 129 (198)
T cd01470 60 --NSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG------G-S- 129 (198)
T ss_pred --CCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC------C-C-
Confidence 11234455544333222221 246699999999887764211 0 12378899999997641 1 1
Q ss_pred hHHHHHHHHHHh----------cCCCeEEEEEecCCC-CCccccccCC
Q 012592 267 QEKKTVEAIVKA----------SEYPLSIILVGVGDG-PWDMMREFDD 303 (460)
Q Consensus 267 ~~~~Ti~aIv~A----------S~~PLSIIiVGVGd~-~f~~M~~lDd 303 (460)
.....+.|.++ .+..+.|..||||+. +.+.|+++=.
T Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 130 -PLPTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred -hhHHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 23334444433 334689999999964 7777777744
No 31
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.13 E-value=2.6e-05 Score=71.23 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=93.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~~ 196 (460)
++++.+|-|.|++. ..++++...+-.++..|+ ++..|-++.|+.... .+|.|+.
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC--
Confidence 68999999999851 234555555555555543 567899999998642 2344431
Q ss_pred CccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCccchhHHHH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 271 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 271 (460)
....+.++++..++- ...|.|+....|+.+.+...+. ...-.++||||||.-++ +.++.
T Consensus 59 --~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELP 122 (164)
T ss_pred --CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHH
Confidence 234566666544431 1468899999999887654221 23457889999998654 23344
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCccccccCC
Q 012592 272 VEAIVKASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
.+.+. +..+-|..||+|+.+...|+++-+
T Consensus 123 a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 123 ARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 44444 458899999999987777776654
No 32
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.11 E-value=7.3e-05 Score=70.93 Aligned_cols=170 Identities=16% Similarity=0.255 Sum_probs=108.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHH-HHHHHHhhcccccCCC---CccceEeeCCCCCCCCcccccCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYE-QAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq-~AI~~Ig~il~~yD~D---~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.+++.||-|.|.+. ..++ .++..+-.++..|+-. -.+-+.=|++... ..|+|+.+
T Consensus 2 Di~fllD~S~Si~~------------------~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESASIGY------------------SNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCcccH------------------HHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc
Confidence 57899999999851 2344 3555666667776643 5788888887542 23455432
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCC----ceEEEEEEeCCccccCCCcccCccchhHHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG----QYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 271 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~----~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 271 (460)
. -..-++++++=++.-+.....|-|+....|+.|.+......+ .--|+|+||||.-++. +....
T Consensus 61 ~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~ 128 (192)
T cd01473 61 E--RYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKEL 128 (192)
T ss_pred c--ccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhH
Confidence 1 123456666555544333446889999999999887654321 2689999999998751 13345
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCccccccCCCC-Cccccceeeeecccccc
Q 012592 272 VEAIVKASEYPLSIILVGVGDGPWDMMREFDDNI-PARAFDNFQFVNFTEIM 322 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd~~-~~R~~DnvqFV~f~~~~ 322 (460)
.++...+-+.-+-|..||||..+-..++.+=+.- ....-.+|=..+|+++.
T Consensus 129 ~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~~f~~l~ 180 (192)
T cd01473 129 QDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKTEWNNLN 180 (192)
T ss_pred HHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEecchhhHH
Confidence 5666677788999999999998766666554421 11112344445566553
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.09 E-value=1.2e-06 Score=92.03 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=41.5
Q ss_pred CCCCCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 406 PPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 406 ~~~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
+....++....|+||++.+.+ ++++|||.||..|+..+ ..||.||..+..
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 344567788999999999999 55699999999999754 379999998764
No 34
>PHA02926 zinc finger-like protein; Provisional
Probab=98.09 E-value=9.8e-07 Score=85.62 Aligned_cols=46 Identities=30% Similarity=0.634 Sum_probs=35.4
Q ss_pred CCCCcccccccCC------Cc---cee-CCCCccchhhhhcCC----------CCCcccccccccc
Q 012592 412 SDNHVCPICLTDP------KD---MAF-GCGHQTCCGCGQDLD----------LCPICRSFIQTRI 457 (460)
Q Consensus 412 ~e~~~CpICl~~~------kd---vv~-~CGH~fC~~Ci~~l~----------~CPiCR~~I~~~i 457 (460)
.++.+|+||++.. .+ -++ +|+|.||..|+..|. .||+||..+..++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3567999999863 12 234 999999999998764 3999999887543
No 35
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.08 E-value=3.5e-05 Score=70.03 Aligned_cols=141 Identities=16% Similarity=0.282 Sum_probs=90.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~~ 196 (460)
++++.||-|+|+.. ..++.+...+..++..|+ .+-.+-++-|+.... .++++..
T Consensus 2 Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~---~~~~~~~-- 58 (164)
T cd01472 2 DIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPR---TEFYLNT-- 58 (164)
T ss_pred CEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCcee---EEEecCC--
Confidence 78999999999951 234444455555555554 345899999997542 2334432
Q ss_pred CccCCHHHHHHHHHHhcCccee-cCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~L-sGPT~FapVI~~a~~~~~~s-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
....+.+.++ +..++. .|.|+....++.|.+..... .+.-.++++||||.-++ +..+
T Consensus 59 --~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-----------~~~~ 121 (164)
T cd01472 59 --YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD-----------DVEE 121 (164)
T ss_pred --CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc-----------hHHH
Confidence 1234444443 333443 78899999999999887642 23347789999997553 1222
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCccccccCC
Q 012592 271 TVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
....+ .+..+.|..||+|+.+.+.|+.+=+
T Consensus 122 ~~~~l---~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 122 PAVEL---KQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred HHHHH---HHCCCEEEEEECCcCCHHHHHHHHC
Confidence 23333 3467899999999988777777644
No 36
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.07 E-value=2.9e-05 Score=85.43 Aligned_cols=145 Identities=23% Similarity=0.252 Sum_probs=96.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.++++.||.|+|+. | +..++|-..+..+|....++..|-++.|+...... +... .
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~---~~~~----~ 326 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLL---FPVP----V 326 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEe---cccc----c
Confidence 47999999999995 1 23567777777788888888899999999865321 1110 0
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc-CCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 277 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s-~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~ 277 (460)
..+ ++-+++..+.+..++..|-|++...|+.|.+..... .+.--.+++||||.+.+ +.+.++++..
T Consensus 327 ~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 327 PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 011 122333344455677789999999999998763222 22334568899999875 5677777765
Q ss_pred hcCCCeEEEEEecCCC-CCccccccC
Q 012592 278 ASEYPLSIILVGVGDG-PWDMMREFD 302 (460)
Q Consensus 278 AS~~PLSIIiVGVGd~-~f~~M~~lD 302 (460)
+. -..-|..||||+. +...|+.+-
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHH
Confidence 43 2456778899975 555666553
No 37
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.00 E-value=0.00012 Score=66.10 Aligned_cols=134 Identities=21% Similarity=0.328 Sum_probs=88.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
+++++.+|-|.|+.. .|+++...+..++..+.. .-.+-+.+|+.... ..-.|++...
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~-~~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGR-QRVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCc-eEEEecCCCC
Confidence 478999999999841 255566666666776664 67899999988532 1123444321
Q ss_pred CCccCCHHHHHHHHHHhcCcce-ecCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapVI~~a~~~~~~s----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
+..+.++++-. .++ ..|.|+....|+.+.+...+. .+...+++++|||..++ +..+
T Consensus 61 ----~~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEK 121 (163)
T ss_pred ----CCHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHH
Confidence 23344444433 233 467899999999999887521 12347899999998764 1334
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 012592 271 TVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
..+.+.+ ..-+.|+.||+|+.
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~ 142 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDP 142 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCc
Confidence 4555655 46688999999986
No 38
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.00 E-value=1e-06 Score=64.27 Aligned_cols=35 Identities=40% Similarity=1.040 Sum_probs=28.5
Q ss_pred cccccccCCCc----ceeCCCCccchhhhhcC----CCCCccc
Q 012592 416 VCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICR 450 (460)
Q Consensus 416 ~CpICl~~~kd----vv~~CGH~fC~~Ci~~l----~~CPiCR 450 (460)
.|+||++.+.+ +.++|||.||.+|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999998742 44599999999999876 4899997
No 39
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.94 E-value=5e-06 Score=64.34 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=35.6
Q ss_pred CcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 415 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
..|+||.+..++ ++++|||.||.+|+.++ ..||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 579999999999 66699999999999865 479999998853
No 40
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.93 E-value=6.3e-05 Score=67.59 Aligned_cols=142 Identities=18% Similarity=0.321 Sum_probs=88.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
++++.||.|.|+... ...-..||+. +|+...+...|-++.||.....-... +-+ ..-
T Consensus 2 ~vvilvD~S~Sm~g~----------------~~~~k~al~~---~l~~L~~~d~fnii~f~~~~~~~~~~--~~~--~~~ 58 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE----------------KELVKDALRA---ILRSLPPGDRFNIIAFGSSVRPLFPG--LVP--ATE 58 (155)
T ss_pred eEEEEEeCCCCCCCc----------------HHHHHHHHHH---HHHhCCCCCEEEEEEeCCEeeEcchh--HHH--HhH
Confidence 689999999999521 1233444544 44555556699999999854311110 000 001
Q ss_pred CCHHHHHHHHHHhcCccee-cCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHh
Q 012592 200 NGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~L-sGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
.+.+.+++ .+..+.. .|.|+....++.|.+.. ...+.-..+++||||..++ ..+++.+.+..+
T Consensus 59 ~~~~~a~~----~I~~~~~~~G~t~l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~ 122 (155)
T PF13768_consen 59 ENRQEALQ----WIKSLEANSGGTDLLAALRAALALL-QRPGCVRAIILLTDGQPVS-----------GEEEILDLVRRA 122 (155)
T ss_pred HHHHHHHH----HHHHhcccCCCccHHHHHHHHHHhc-ccCCCccEEEEEEeccCCC-----------CHHHHHHHHHhc
Confidence 23333333 3444666 79999999999988764 2233456678999999743 246777777654
Q ss_pred cCCCeEEEEEecCC-CCCcccccc
Q 012592 279 SEYPLSIILVGVGD-GPWDMMREF 301 (460)
Q Consensus 279 S~~PLSIIiVGVGd-~~f~~M~~l 301 (460)
. -.+-|..+|+|. .+...|++|
T Consensus 123 ~-~~~~i~~~~~g~~~~~~~L~~L 145 (155)
T PF13768_consen 123 R-GHIRIFTFGIGSDADADFLREL 145 (155)
T ss_pred C-CCceEEEEEECChhHHHHHHHH
Confidence 3 557788899997 456666655
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.93 E-value=2.8e-06 Score=60.65 Aligned_cols=33 Identities=42% Similarity=1.114 Sum_probs=26.4
Q ss_pred ccccccCCCcc-e-eCCCCccchhhhhcC----CCCCcc
Q 012592 417 CPICLTDPKDM-A-FGCGHQTCCGCGQDL----DLCPIC 449 (460)
Q Consensus 417 CpICl~~~kdv-v-~~CGH~fC~~Ci~~l----~~CPiC 449 (460)
|+||++...+. + ++|||.||.+|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999994 4 499999999999754 479987
No 42
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.92 E-value=0.00013 Score=66.73 Aligned_cols=140 Identities=19% Similarity=0.299 Sum_probs=84.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.+++|.||.|.|+... .+. ..+--+.|...+...+...+ +..+-++.|++.... ++.+..+.
T Consensus 3 ~~vv~vlD~S~SM~~~---~~~---------~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~---~~~~~~~~-- 64 (180)
T cd01467 3 RDIMIALDVSGSMLAQ---DFV---------KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT---QAPLTLDR-- 64 (180)
T ss_pred ceEEEEEECCcccccc---cCC---------CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee---ccCCCccH--
Confidence 5799999999999642 110 13444555555666666554 458999999875421 22222110
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHh
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
.-++.+++... .....|.|+...-|+.+.+........-.+++|||||.-+. |..++ .+..+ .+
T Consensus 65 -~~~~~~l~~l~----~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~~---~~ 128 (180)
T cd01467 65 -ESLKELLEDIK----IGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAAE---LA 128 (180)
T ss_pred -HHHHHHHHHhh----hcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHHH---HH
Confidence 11223333322 23357889998888888888765544557889999997653 22222 22232 23
Q ss_pred cCCCeEEEEEecCC
Q 012592 279 SEYPLSIILVGVGD 292 (460)
Q Consensus 279 S~~PLSIIiVGVGd 292 (460)
....+-|..||||+
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 35577888888887
No 43
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.87 E-value=0.00014 Score=68.01 Aligned_cols=146 Identities=15% Similarity=0.230 Sum_probs=93.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---------CCCCccceEeeCCCCCCCCcc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---------DEDNLIPCFGFGDASTHDQEV 189 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~y---------D~D~~ip~fGFGa~~~~~~~v 189 (460)
+++++.||-|.|.+. ..++.+...+-.++..+ ..+-.+-++.|+.... .+
T Consensus 3 ~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~---~~ 61 (186)
T cd01480 3 VDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQE---VE 61 (186)
T ss_pred eeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCce---ee
Confidence 589999999999951 23455554444455555 2235789999997543 23
Q ss_pred cccCCCCCccCCHHHHHHHHHHhcCcce-ecCCCChHHHHHHHHHHHHh--cCCceEEEEEEeCCccccCCCcccCccch
Q 012592 190 FSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEH--SGGQYHVLVIIADGQVTRSVDTEHGQLSS 266 (460)
Q Consensus 190 F~~~~~~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapVI~~a~~~~~~--s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 266 (460)
|.+..+ -...+.++++ +..++ ..|.|+....|+.|.+.... ..+.-.++++||||..++..
T Consensus 62 ~~l~~~---~~~~~~l~~~----i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~--------- 125 (186)
T cd01480 62 AGFLRD---IRNYTSLKEA----VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP--------- 125 (186)
T ss_pred Eecccc---cCCHHHHHHH----HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc---------
Confidence 455421 1234444443 44444 47899999999999988765 22335788999999864311
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEecCCCCCccccccC
Q 012592 267 QEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 302 (460)
Q Consensus 267 ~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lD 302 (460)
.....+++.++.+..+.|..||||..+-..|+++=
T Consensus 126 -~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA 160 (186)
T cd01480 126 -DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred -chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHH
Confidence 12233455556678999999999986655555543
No 44
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.83 E-value=7.8e-06 Score=59.98 Aligned_cols=36 Identities=39% Similarity=0.923 Sum_probs=30.1
Q ss_pred cccccccCCCc----ceeCCCCccchhhhhcCC----CCCcccc
Q 012592 416 VCPICLTDPKD----MAFGCGHQTCCGCGQDLD----LCPICRS 451 (460)
Q Consensus 416 ~CpICl~~~kd----vv~~CGH~fC~~Ci~~l~----~CPiCR~ 451 (460)
.|+||++.+.+ .+++|||.||..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999998822 445999999999999876 8999985
No 45
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.82 E-value=0.00013 Score=65.70 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=88.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~---~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~ 196 (460)
++++.||-|.|++. +.++++...|-.++. ..+..-.+-+.-||.... .+|+|+..
T Consensus 1 DivflvD~S~sm~~------------------~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSG------------------DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY- 58 (178)
T ss_dssp EEEEEEE-STTSCH------------------HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH-
T ss_pred CEEEEEeCCCCCch------------------HHHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc-
Confidence 57999999999952 335555555555555 566667899999998654 34555322
Q ss_pred CccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCccchhHHHH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 271 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 271 (460)
...+.+++.= ........|-|+++..|+.|.+..... .....++++||||..++.. .....
T Consensus 59 ---~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~---------~~~~~ 124 (178)
T PF00092_consen 59 ---QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD---------SPSEE 124 (178)
T ss_dssp ---SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------GHHHH
T ss_pred ---cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------chHHH
Confidence 2344554432 233445679999999999999986543 4578999999999998721 12233
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCccccccC
Q 012592 272 VEAIVKASEYPLSIILVGVGDGPWDMMREFD 302 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd~~f~~M~~lD 302 (460)
...+.+. .-+.++.||++..+-..|+.|-
T Consensus 125 ~~~~~~~--~~i~~~~ig~~~~~~~~l~~la 153 (178)
T PF00092_consen 125 AANLKKS--NGIKVIAIGIDNADNEELRELA 153 (178)
T ss_dssp HHHHHHH--CTEEEEEEEESCCHHHHHHHHS
T ss_pred HHHHHHh--cCcEEEEEecCcCCHHHHHHHh
Confidence 3333322 4555555555345555555543
No 46
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.82 E-value=0.00041 Score=62.13 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=78.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
.+++.||.|.|+... ..-.-..++..++..+.. .+..+-++.|+... ....+. .-
T Consensus 2 ~v~illD~SgSM~~~---------------k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~----~~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMYGA---------------PEEVAKAVALALLRIALA--ENRDTYLILFDSEF----QTKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCCCC---------------HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc----eEEecC----Cc
Confidence 578999999999521 011233444445554444 24478999998861 111111 12
Q ss_pred CCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCc-cccCCCcccCccchhHHHHHHHHHHh
Q 012592 200 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQ-VTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~-i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
..+..+++. +..+...|.|++++.++.+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEF----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 345555554 3345667999999999999998876543336789999995 222 12332222333
Q ss_pred cCCCeEEEEEecCCC
Q 012592 279 SEYPLSIILVGVGDG 293 (460)
Q Consensus 279 S~~PLSIIiVGVGd~ 293 (460)
....+-|..||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344566677777763
No 47
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.73 E-value=0.00038 Score=76.21 Aligned_cols=142 Identities=14% Similarity=0.208 Sum_probs=96.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-C--ccceEeeCCCCCCCCcccccCC
Q 012592 118 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED-N--LIPCFGFGDASTHDQEVFSFYP 194 (460)
Q Consensus 118 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D-~--~ip~fGFGa~~~~~~~vF~~~~ 194 (460)
.++++|.||-|+|.+. .|-.++|+..+..++..|+.. . .+-+..|+.... .+|.|..
T Consensus 42 ~lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfpL~s 101 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIRLGS 101 (576)
T ss_pred CceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEecCC
Confidence 3689999999999962 244577888888888888542 2 333467776532 3455543
Q ss_pred CCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccccCCCcccCccchhHHHH
Q 012592 195 DEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 271 (460)
Q Consensus 195 ~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 271 (460)
.. -...+.++.+-.++...+...|-|++...+..|.+...+.+ ..--|+|+||||.-++ ..++
T Consensus 102 ~~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dv 167 (576)
T PTZ00441 102 GA--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRA 167 (576)
T ss_pred Cc--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccH
Confidence 21 12345666666666666667799999999999988776432 2236889999999654 2344
Q ss_pred HHHHHHhcCCCeEEEEEecCCC
Q 012592 272 VEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd~ 293 (460)
++++....+.-+-|..||||.+
T Consensus 168 leaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 168 LEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHHCCCEEEEEEeCCC
Confidence 5555555567889999999974
No 48
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.72 E-value=0.00021 Score=66.55 Aligned_cols=146 Identities=15% Similarity=0.204 Sum_probs=87.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC-CCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD-EDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD-~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
+++++.||-|+|++.. +..++..+-.++..|+ .+..+-++.|+... ..+|+|+...
T Consensus 5 ~Dvv~llD~SgSm~~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~---~~~~~l~~~~- 61 (185)
T cd01474 5 FDLYFVLDKSGSVAAN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRA---TKILPLTDDS- 61 (185)
T ss_pred eeEEEEEeCcCchhhh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCc---eEEEeccccH-
Confidence 5799999999999521 1122222333333443 34689999998753 2356664322
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHh--cCCce--EEEEEEeCCccccCCCcccCccchhHHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--SGGQY--HVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 273 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~--s~~~Y--~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~ 273 (460)
+.+.++.. .+..+...|-|+...-|+.|.+.+.. .++.. .++++||||..++.. ...+.+
T Consensus 62 -----~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~ 125 (185)
T cd01474 62 -----SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEH 125 (185)
T ss_pred -----HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHH
Confidence 12222221 23445557889999999999887632 22222 788999999975310 112233
Q ss_pred HHHHhcCCCeEEEEEecCCCCCccccccCC
Q 012592 274 AIVKASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 274 aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
+...+-+.-+-|..||||+.+.+.|+.+=+
T Consensus 126 ~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 126 EAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 333344467789999998877777776644
No 49
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.71 E-value=1.3e-05 Score=56.61 Aligned_cols=38 Identities=39% Similarity=1.065 Sum_probs=30.5
Q ss_pred cccccccCCCc-cee-CCCCccchhhhhcC-----CCCCcccccc
Q 012592 416 VCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFI 453 (460)
Q Consensus 416 ~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l-----~~CPiCR~~I 453 (460)
.|+||++...+ +.+ +|||.||..|+..+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999855 445 69999999999744 4799999753
No 50
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.67 E-value=9.3e-06 Score=58.04 Aligned_cols=33 Identities=42% Similarity=1.100 Sum_probs=28.0
Q ss_pred ccccccCCCc-c-eeCCCCccchhhhhcC------CCCCcc
Q 012592 417 CPICLTDPKD-M-AFGCGHQTCCGCGQDL------DLCPIC 449 (460)
Q Consensus 417 CpICl~~~kd-v-v~~CGH~fC~~Ci~~l------~~CPiC 449 (460)
|+||++.+.+ + +++|||.||..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999998 4 4599999999999754 369987
No 51
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.5e-05 Score=79.00 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=36.6
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhc-C-----CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD-L-----DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~-l-----~~CPiCR~~I~~ 455 (460)
..+..|.||++...+ +..+|||.||+.|+-. | ..||+||+....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 446799999999998 5679999999999976 4 269999987653
No 52
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.65 E-value=0.00042 Score=66.78 Aligned_cols=142 Identities=17% Similarity=0.239 Sum_probs=92.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC---CccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D---~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
+++++.||-|.|.+ ...++++...+..++..|+-. -.+-++.|+.... .+|+|+..
T Consensus 3 ~DlvfllD~S~Sm~------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRSVR------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc
Confidence 47999999999984 245788888888888888643 4899999998743 34666532
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHH-h-c---CCc---eEEEEEEeCCccccCCCcccCccchh
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE-H-S---GGQ---YHVLVIIADGQVTRSVDTEHGQLSSQ 267 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~-~-s---~~~---Y~VLlIiTDG~i~d~~d~~~~~~~~~ 267 (460)
...+++.++-.. ++. +.|.|.-.-.|+.|.+.+- + . .+. -.|+|+||||.-.| +
T Consensus 62 ----~~~~~l~~~i~~-i~~--~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~-----------~ 123 (224)
T cd01475 62 ----KSKADLKRAVRR-MEY--LETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD-----------D 123 (224)
T ss_pred ----CCHHHHHHHHHh-CcC--CCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------c
Confidence 233455554332 222 3566777777777766531 1 1 111 47899999998664 2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCccccccC
Q 012592 268 EKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 302 (460)
Q Consensus 268 ~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lD 302 (460)
..+..+.+. ..-+.|..||||+.+.+.|+++=
T Consensus 124 ~~~~a~~lk---~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 124 VSEVAAKAR---ALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred HHHHHHHHH---HCCcEEEEEeCCcCCHHHHHHHh
Confidence 344444443 45688999999997766665553
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=1.5e-05 Score=88.43 Aligned_cols=44 Identities=32% Similarity=0.662 Sum_probs=37.6
Q ss_pred CCCCcccccccCCCccee-CCCCccchhhhhc-----CCCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQD-----LDLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv~-~CGH~fC~~Ci~~-----l~~CPiCR~~I~~ 455 (460)
.+-+.|++|-++++|+++ .|||.||..|++. .+.||.|...|..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345899999999999665 9999999999974 3699999999853
No 54
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.60 E-value=0.00075 Score=63.57 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=89.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.+++|+||.|.|+... +-.+|-.++|-..+...+..+.+ ...+-++.|++...+. +.+++.|
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~D 68 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTGN 68 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCCC
Confidence 4799999999998632 11379999999999999988733 3578889996543321 2233222
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccCCCcccCccchhHHHHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 273 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~--~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~ 273 (460)
.+.++..-+.. +...|-|++...|+.|.+..++... +=.|+||++||.-.+ ..+..+
T Consensus 69 ------~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 69 ------PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred ------HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 23333333222 2445779999999999988865322 224788899987554 111223
Q ss_pred HHHHhcCCCeEEEEEecCCC
Q 012592 274 AIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 274 aIv~AS~~PLSIIiVGVGd~ 293 (460)
++..+.+..+-|-+||||.+
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 34444455688888999853
No 55
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.59 E-value=0.0012 Score=61.19 Aligned_cols=145 Identities=17% Similarity=0.253 Sum_probs=90.0
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 121 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 121 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~-~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
+++.||.|+|+.. .+..+.|...+..++. .+..+..+-++.|.+...+ .++.+ .
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~------t 57 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPP------T 57 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCC------C
Confidence 5789999999951 1356666666666664 3455668999999764211 12222 1
Q ss_pred CCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHH-hc--CCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHH
Q 012592 200 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE-HS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 276 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~-~s--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv 276 (460)
.+.+.+.+ .+..+...|-|++..-++.+.+.++ +. .+.-.++++||||..+...| +......+++.
T Consensus 58 ~~~~~~~~----~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~-------~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAKR----RLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPD-------PTADRALAAAR 126 (178)
T ss_pred CCHHHHHH----HHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCC-------chhHHHHHHHH
Confidence 23444433 3445667899999999999998872 22 12247889999998763111 11112244555
Q ss_pred HhcCCCeEEEEEecCCCCC--cccccc
Q 012592 277 KASEYPLSIILVGVGDGPW--DMMREF 301 (460)
Q Consensus 277 ~AS~~PLSIIiVGVGd~~f--~~M~~l 301 (460)
++....+.|+.||+|..+. +.|++|
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHH
Confidence 5566788889999987543 345544
No 56
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.59 E-value=0.00083 Score=64.10 Aligned_cols=139 Identities=11% Similarity=0.141 Sum_probs=96.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---------CCccceEeeCCCCCCCCcc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---------DNLIPCFGFGDASTHDQEV 189 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---------D~~ip~fGFGa~~~~~~~v 189 (460)
+.++++||-|.|.+ .+.++++..-|..++..++. .-.+-+.-|+.... -.
T Consensus 20 ~DivfvlD~S~Sm~------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~---~~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMT------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT---VV 78 (193)
T ss_pred eeEEEEEeCCCCcc------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE---EE
Confidence 46999999999985 24588888888887777765 24788888877532 23
Q ss_pred cccCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCcc
Q 012592 190 FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQL 264 (460)
Q Consensus 190 F~~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s-----~~~Y~VLlIiTDG~i~d~~d~~~~~~ 264 (460)
|+|+ .....++++++....++.+...|-|+...-|++|.+..... .+.--|+|+||||.-...
T Consensus 79 ~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-------- 146 (193)
T cd01477 79 ADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-------- 146 (193)
T ss_pred Eecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC--------
Confidence 5553 13467788888777666665667799999999998887643 123578899999854321
Q ss_pred chhHHHHHHHHHHhcCCCeEEEEEecCCC
Q 012592 265 SSQEKKTVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 265 ~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
.....++..++.+..+-|.-||||.+
T Consensus 147 ---~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 147 ---SNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred ---CCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 01122333344567999999999984
No 57
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.52 E-value=0.00099 Score=61.91 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=92.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
+.+++.||-|.|.+ ...++++..-+..++..|+. .-.+-+..|+.... ..|+|..
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecCc-
Confidence 36899999998874 35688888888888888886 35888999988642 2355542
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHH--HhcC---CceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV--EHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~--~~s~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
-...+.++++=+. ++ .+.|.|+....|+.|.+.. ...+ +.-.|+|+||||.-++.. .
T Consensus 59 ---~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~ 120 (177)
T cd01469 59 ---YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------L 120 (177)
T ss_pred ---cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------c
Confidence 1234555554332 22 2567899999999998875 2221 345788999999988622 1
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 012592 271 TVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
+.+++..|-..-+-|.-||||+.
T Consensus 121 ~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 121 LKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred cHHHHHHHHHCCcEEEEEEeccc
Confidence 23344445567889999999984
No 58
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.49 E-value=2.3e-05 Score=57.80 Aligned_cols=26 Identities=46% Similarity=0.986 Sum_probs=16.6
Q ss_pred ccccccCCCc-----ceeCCCCccchhhhhcC
Q 012592 417 CPICLTDPKD-----MAFGCGHQTCCGCGQDL 443 (460)
Q Consensus 417 CpICl~~~kd-----vv~~CGH~fC~~Ci~~l 443 (460)
|+||.+ +.+ ++++|||.||.+|++++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 544 66799999999999865
No 59
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.48 E-value=0.0014 Score=65.82 Aligned_cols=138 Identities=18% Similarity=0.334 Sum_probs=91.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.++++|||-|+|+...+ + .++..| |+..|.+.+..-.. +.+-+.+||.... .+.+|+.+
T Consensus 61 ~qIvlaID~S~SM~~~~-------~------~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~d--- 119 (266)
T cd01460 61 YQILIAIDDSKSMSENN-------S------KKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDEQ--- 119 (266)
T ss_pred ceEEEEEecchhccccc-------c------cccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCCC---
Confidence 57999999999996421 1 356766 88888888887775 6899999998632 22333221
Q ss_pred cCCHHHHHHHHHHhcCcceec-CCCChHHHHHHHHHHHHhcC-----C-ceEEEEEEeCCccccCCCcccCccchhHHHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLA-GPTSFAPIIEMAITIVEHSG-----G-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 271 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~Ls-GPT~FapVI~~a~~~~~~s~-----~-~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 271 (460)
+.. ++.-+++....+. +-|+.+..|..+++..++.. + .--++|||+||...+ ++...
T Consensus 120 ---~~~--~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~-----------~e~~~ 183 (266)
T cd01460 120 ---FSS--QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEF-----------SEGAQ 183 (266)
T ss_pred ---chh--hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCccc-----------CccHH
Confidence 111 1222233322222 34999999999999876541 1 137999999999433 12333
Q ss_pred HHHHHHhcCCCeEEEEEecCCC
Q 012592 272 VEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd~ 293 (460)
..++.+|.+..+.+++|||=+.
T Consensus 184 ~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 184 KVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHcCCeEEEEEEcCC
Confidence 4457788888999999999664
No 60
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.46 E-value=8.3e-05 Score=50.49 Aligned_cols=33 Identities=48% Similarity=1.254 Sum_probs=27.5
Q ss_pred ccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcc
Q 012592 417 CPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPIC 449 (460)
Q Consensus 417 CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiC 449 (460)
|+||++...+ +.++|||.||..|+..+ ..||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899999777 45699999999999754 469987
No 61
>PRK13685 hypothetical protein; Provisional
Probab=97.46 E-value=0.0019 Score=66.13 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=92.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.+++++||-|+|+..++ ..+|-.+.|-..+..++..+.++..+-++.|++...- +.++.
T Consensus 89 ~~vvlvlD~S~SM~~~D-------------~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRATD-------------VEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCCC-------------CCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC-----
Confidence 46999999999996321 1358889999999999999877778999999986431 12222
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~--------s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
...+.+.+ .+..+...|-|+...-|..|.+.+++ ++...-++|+||||.-+...+ ..+...
T Consensus 148 -~d~~~l~~----~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~------~~~~~~ 216 (326)
T PRK13685 148 -TNREATKN----AIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN------PDNPRG 216 (326)
T ss_pred -CCHHHHHH----HHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC------CCCccc
Confidence 23333322 33445566778888888888887653 111234668999998653110 000111
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 012592 271 TVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
..++...|.+..+.|-.||||..
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCC
Confidence 23455556677888888899863
No 62
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.41 E-value=2.8e-05 Score=79.44 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=38.9
Q ss_pred CCCCCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
.+.+-+.|-||.++++. ++.+|+|.||.-|+++. ..||.|+.+++.
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 35566899999999999 55699999999999865 489999988764
No 63
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=7.3e-06 Score=84.03 Aligned_cols=48 Identities=31% Similarity=0.685 Sum_probs=39.3
Q ss_pred CCCCCCCcccccccCCCc-cee-CCCCccchhhhhcC-----CCCCccccccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTR 456 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l-----~~CPiCR~~I~~~ 456 (460)
..+..+..|+|||++.+. ++. .|+|.||.+|+... ..||.||+....+
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 445667899999999888 554 99999999999754 4899999987654
No 64
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.34 E-value=0.00089 Score=59.81 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=79.8
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCccC
Q 012592 121 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCN 200 (460)
Q Consensus 121 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c~ 200 (460)
+.||||-|+|.. .....+++..|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis------------------~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----------~ 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS------------------DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----------R 50 (126)
T ss_pred CEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----------e
Confidence 579999999983 357888999999999999 3448888887765433222 1
Q ss_pred CHHHHHHHHHHhcCccee--cCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHh
Q 012592 201 GFEEVLRRYRELVPHLRL--AGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 201 G~egvl~~Yr~~l~~v~L--sGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
..+ ..+..+++ .|-|+|.|+++.+.+. .....++|+||||..... ..+
T Consensus 51 ~~~-------~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~ 100 (126)
T PF09967_consen 51 SLE-------DELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEA 100 (126)
T ss_pred ccc-------ccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCC
Confidence 101 11222232 4679999999998643 345678889999988531 112
Q ss_pred cCCCeEEEEEe--cCCCCCcccccc
Q 012592 279 SEYPLSIILVG--VGDGPWDMMREF 301 (460)
Q Consensus 279 S~~PLSIIiVG--VGd~~f~~M~~l 301 (460)
=.+|+=|++.| -...||+..-.|
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEEe
Confidence 37899999999 223456554433
No 65
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.31 E-value=6.2e-05 Score=60.08 Aligned_cols=43 Identities=30% Similarity=0.763 Sum_probs=24.8
Q ss_pred CCCCcccccccCCCc-cee-CCCCccchhhhhcC--CCCCccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL--DLCPICRSFIQ 454 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l--~~CPiCR~~I~ 454 (460)
++.+.|++|.+..+. +.+ .|.|.||..|+.+. ..||+|+.|-.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence 445789999999999 444 99999999999876 47999998863
No 66
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.29 E-value=7.6e-05 Score=77.69 Aligned_cols=42 Identities=36% Similarity=0.889 Sum_probs=37.5
Q ss_pred CcccccccCCCccee-CCCCccchhhhhcCC------CCCccccccccc
Q 012592 415 HVCPICLTDPKDMAF-GCGHQTCCGCGQDLD------LCPICRSFIQTR 456 (460)
Q Consensus 415 ~~CpICl~~~kdvv~-~CGH~fC~~Ci~~l~------~CPiCR~~I~~~ 456 (460)
.+|.||-++.+|+.+ +|||..|..|+..|. .||.||-.|...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 589999999999888 999999999998774 799999988653
No 67
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.21 E-value=0.0046 Score=57.22 Aligned_cols=142 Identities=14% Similarity=0.229 Sum_probs=92.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~~ 196 (460)
.+++.||-|.|.+ ...++++..-|.+++..|+ +.-.+.+.-|+.... ..|.|+.-
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc-
Confidence 5789999998874 3567888888888888887 345788888887542 24666422
Q ss_pred CccCCHHHHHHHHHHhcCcceecC-CCChHHHHHHHHHHHHh--c-----CCceEEEEEEeCCccccCCCcccCccchhH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRLAG-PTSFAPIIEMAITIVEH--S-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQE 268 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~LsG-PT~FapVI~~a~~~~~~--s-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 268 (460)
...++++++-.++ +. ..| .|+-...|+.+.+.+-. . .+--.|||+||||.-.| +.
T Consensus 60 ---~~~~~l~~~i~~i-~~--~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~~ 122 (165)
T cd01481 60 ---STKADVLGAVRRL-RL--RGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------DV 122 (165)
T ss_pred ---CCHHHHHHHHHhc-cc--CCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------hH
Confidence 2456676654432 22 245 47888888888765421 1 12357999999999765 23
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCCCccccccCC
Q 012592 269 KKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 269 ~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
.+..+.+.+ .-+-|+.||+|..+.+.|+.+-+
T Consensus 123 ~~~a~~lr~---~gv~i~~vG~~~~~~~eL~~ias 154 (165)
T cd01481 123 ERPAVALKR---AGIVPFAIGARNADLAELQQIAF 154 (165)
T ss_pred HHHHHHHHH---CCcEEEEEeCCcCCHHHHHHHhC
Confidence 444445554 45777888888666555555543
No 68
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00012 Score=74.02 Aligned_cols=41 Identities=29% Similarity=0.733 Sum_probs=35.4
Q ss_pred CCcccccccCCCc----ceeCCCCccchhhhhcCC-----CCCccccccc
Q 012592 414 NHVCPICLTDPKD----MAFGCGHQTCCGCGQDLD-----LCPICRSFIQ 454 (460)
Q Consensus 414 ~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l~-----~CPiCR~~I~ 454 (460)
..+|.||++.+.. +++||.|.|-..|+.+|. .||.||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3799999998754 667999999999999984 7999999875
No 69
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.18 E-value=0.0082 Score=57.59 Aligned_cols=155 Identities=12% Similarity=0.216 Sum_probs=97.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCC----CCccccc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSF 192 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~---yD~D~~ip~fGFGa~~~~----~~~vF~~ 192 (460)
.++++||.|.|+... -+ +..++..+.|+..+..+++. ......+-++.||...+. ..+|+.+
T Consensus 3 ~ivf~iDvS~SM~~~----~~-------~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES----KD-------GEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC----CC-------CCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 479999999999621 00 11368999999999999997 666779999999987543 2344444
Q ss_pred CCCCCccCCHHHHHHHHHHhcCcce--------ecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccC
Q 012592 193 YPDEKFCNGFEEVLRRYRELVPHLR--------LAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHG 262 (460)
Q Consensus 193 ~~~~~~c~G~egvl~~Yr~~l~~v~--------LsGPT~FapVI~~a~~~~~~s~--~~Y~VLlIiTDG~i~d~~d~~~~ 262 (460)
.|-+ .... +.++.+.+.+.... -++.|.+..+|..|.++..+.. ..=-.+++||||.-.- +
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------G 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------C
Confidence 3311 1122 23333343332221 2457899999999998877521 1124678999986320 0
Q ss_pred ccchhHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 012592 263 QLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 294 (460)
Q Consensus 263 ~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 294 (460)
.=....++..+.+.+..+.-+.|.+||||..+
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 00011344455566677778999999998754
No 70
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.16 E-value=0.00013 Score=59.12 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCccccccccc
Q 012592 413 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 456 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~~ 456 (460)
+.+.|+||.+.++| |+++|||.|++.|+.++ ..||+|++++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 56899999999999 66799999999999765 4799999988753
No 71
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.14 E-value=0.0038 Score=59.98 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=90.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
+++++||.|+|+.. |+ . .+...-.-..|...+.+.+..|.+.......||++....-..+ .+ +.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~--~---~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~~l-t~--d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN--G---YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFV-KT--NHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh--c---cCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccCcc-cc--ccCcc
Confidence 58999999999952 21 0 1222333444555555556666677777788886643221111 11 33333
Q ss_pred CCHH--HHHHHHHHhcCcceecCCCChHHHHHHHHHHHH-hcCCceEEEEEEeCCccccCCCcccCccchhHHHHHH-HH
Q 012592 200 NGFE--EVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE-HSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE-AI 275 (460)
Q Consensus 200 ~G~e--gvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~-~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~-aI 275 (460)
..-+ ++|...-.- -++-++|+..= .-|..+++..+ ++..+=.|+++||||.-+. |.++| ++ |-
T Consensus 69 ~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P-----~~aAa 135 (191)
T cd01455 69 NNKERLETLKMMHAH-SQFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQP-----KKLAD 135 (191)
T ss_pred cchhHHHHHHHHHHh-cccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCCh-----HHHHH
Confidence 3333 333333222 23456776433 88888888887 6655556889999999764 44555 22 12
Q ss_pred HHhcCCCeEEEEEecCCCCCcccccc
Q 012592 276 VKASEYPLSIILVGVGDGPWDMMREF 301 (460)
Q Consensus 276 v~AS~~PLSIIiVGVGd~~f~~M~~l 301 (460)
.-|.+.-+=|-.||||..+.+.++.+
T Consensus 136 ~lA~~~gV~iytIgiG~~d~~~l~~i 161 (191)
T cd01455 136 ALAREPNVNAFVIFIGSLSDEADQLQ 161 (191)
T ss_pred HHHHhCCCEEEEEEecCCCHHHHHHH
Confidence 33556677788888887654444443
No 72
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0002 Score=74.18 Aligned_cols=41 Identities=32% Similarity=0.758 Sum_probs=34.6
Q ss_pred CcccccccCCCc----ceeCCCCccchhhhhcCC-----CCCcccccccc
Q 012592 415 HVCPICLTDPKD----MAFGCGHQTCCGCGQDLD-----LCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l~-----~CPiCR~~I~~ 455 (460)
..|.||+|.++. .+|||.|.|-+.|+..|. .||+|++.+.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 499999998776 346999999999998873 59999997754
No 73
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.09 E-value=0.00014 Score=73.21 Aligned_cols=44 Identities=27% Similarity=0.532 Sum_probs=36.9
Q ss_pred CCCCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCccccccc
Q 012592 411 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQ 454 (460)
Q Consensus 411 l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~ 454 (460)
+.....|-||-+.++. +..+|||.||.-|+.+. ..||+||.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 4455799999999998 55599999999999865 48999998764
No 74
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.04 E-value=0.0087 Score=66.32 Aligned_cols=166 Identities=13% Similarity=0.206 Sum_probs=105.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcc-cccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTL-SSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il-~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
..+++.||.|+|+. .|.-..|-..+-.+| ..|-....+-++.|+..... .+++.
T Consensus 402 ~~vvfvvD~SGSM~------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~--~~lpp----- 456 (584)
T PRK13406 402 TTTIFVVDASGSAA------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAE--LLLPP----- 456 (584)
T ss_pred ccEEEEEECCCCCc------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCcee--EEcCC-----
Confidence 67999999999983 145556666666656 34766668999999653211 12221
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCccchhHHHHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAI 275 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aI 275 (460)
-..++.+. +.+..+.-.|-|.++.-|..|.+.+++. .+.-.++|+||||..+...+...|. .....+...+.
T Consensus 457 -T~~~~~~~----~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~a 530 (584)
T PRK13406 457 -TRSLVRAK----RSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAAA 530 (584)
T ss_pred -CcCHHHHH----HHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHHH
Confidence 22444443 4455777789999999999999887654 2335788999999976432211111 11234445555
Q ss_pred HHhcCCCeEEEEEecCCCCCccccccCCCCCccccceeeeeccccc
Q 012592 276 VKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEI 321 (460)
Q Consensus 276 v~AS~~PLSIIiVGVGd~~f~~M~~lDd~~~~R~~DnvqFV~f~~~ 321 (460)
..+...-+.+++|++|......|++|=+.+. ..|+.+.+.
T Consensus 531 ~~~~~~gi~~~vId~g~~~~~~~~~LA~~~g------g~y~~l~~~ 570 (584)
T PRK13406 531 RALRAAGLPALVIDTSPRPQPQARALAEAMG------ARYLPLPRA 570 (584)
T ss_pred HHHHhcCCeEEEEecCCCCcHHHHHHHHhcC------CeEEECCCC
Confidence 5566667889999999887667776644332 345665555
No 75
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.00 E-value=0.011 Score=65.46 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=93.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~-yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
..++|.||-|+|+. .+..+.|-..+..++.. |-....+-++.|+..... .++++
T Consensus 408 ~~v~fvvD~SGSM~------------------~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~--~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAA------------------VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE--VLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCC------------------hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce--EECCC-----
Confidence 34889999999994 14566666666666653 433447999999754211 12222
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCccch---hHHHH-
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSS---QEKKT- 271 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~---~~~~T- 271 (460)
-.+.+.+. +.+..+..+|.|.++.-|..|.+.+++.. ..-.++|+||||.-+-.++..++...+ +..+.
T Consensus 463 -t~~~~~~~----~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQAK----RRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHHH----HHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 23444443 45677888999999999999999886532 223678999999875322210000011 01111
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCC--ccccccCC
Q 012592 272 VEAIVKASEYPLSIILVGVGDGPW--DMMREFDD 303 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd~~f--~~M~~lDd 303 (460)
..+..+.....+.+++||+|.+.. +.|++|=+
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~ 571 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLAR 571 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHH
Confidence 222222335568999999997644 33665543
No 76
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.92 E-value=0.00051 Score=72.64 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=36.9
Q ss_pred CCCCCCCCcccccccCCCc-c----eeCCCCccchhhhhcCC--CCCcccccc
Q 012592 408 ASSTSDNHVCPICLTDPKD-M----AFGCGHQTCCGCGQDLD--LCPICRSFI 453 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd-v----v~~CGH~fC~~Ci~~l~--~CPiCR~~I 453 (460)
+..+.+..+|||||+.... + +..|-|.|-|.|+..|. .||+||-..
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q 221 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQ 221 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhc
Confidence 3446677899999998765 2 34999999999999986 899999643
No 77
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00046 Score=66.92 Aligned_cols=45 Identities=29% Similarity=0.707 Sum_probs=38.2
Q ss_pred cccccccCCCccee-CCCCcc-chhhhhcCCCCCccccccccccccC
Q 012592 416 VCPICLTDPKDMAF-GCGHQT-CCGCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 416 ~CpICl~~~kdvv~-~CGH~f-C~~Ci~~l~~CPiCR~~I~~~irly 460 (460)
.|..|.+....|++ ||.|.+ |..|...+..||+|+.+....+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 39999999998665 999995 5599988889999999988877665
No 78
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.86 E-value=0.00045 Score=56.20 Aligned_cols=36 Identities=31% Similarity=0.841 Sum_probs=27.6
Q ss_pred CcccccccCC-----------Cc--cee-CCCCccchhhhhcC----CCCCccc
Q 012592 415 HVCPICLTDP-----------KD--MAF-GCGHQTCCGCGQDL----DLCPICR 450 (460)
Q Consensus 415 ~~CpICl~~~-----------kd--vv~-~CGH~fC~~Ci~~l----~~CPiCR 450 (460)
..|.||++.+ .+ +++ .|||.|...|+.+| ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3599999877 12 333 89999999999876 4899998
No 79
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.84 E-value=0.013 Score=56.02 Aligned_cols=161 Identities=12% Similarity=0.193 Sum_probs=100.7
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCCCC
Q 012592 121 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 121 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
.+|+||.|.|+...+ + .+|-++.+...+..++..|-+ ...+-+..|+++.... +.+++.
T Consensus 6 ~vi~lD~S~sM~a~D---~----------~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT~--- 67 (187)
T cd01452 6 TMICIDNSEYMRNGD---Y----------PPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLTN--- 67 (187)
T ss_pred EEEEEECCHHHHcCC---C----------CCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCCC---
Confidence 799999999985321 1 479999999999888744443 3477788888743321 112222
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccccCCCcccCccchhHHHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA 274 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~a 274 (460)
..+.++.. +..+.+.|.+++...|+.|....+... ..=-|++|++++.-.| .....++
T Consensus 68 ---D~~~~~~~----L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~~ 128 (187)
T cd01452 68 ---DQGKILSK----LHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVKL 128 (187)
T ss_pred ---CHHHHHHH----HHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHHH
Confidence 23444443 335567799999999999988775432 1225566666654333 4555566
Q ss_pred HHHhcCCCeEEEEEecCCCC--CccccccCCCCCccccceeeeecccc
Q 012592 275 IVKASEYPLSIILVGVGDGP--WDMMREFDDNIPARAFDNFQFVNFTE 320 (460)
Q Consensus 275 Iv~AS~~PLSIIiVGVGd~~--f~~M~~lDd~~~~R~~DnvqFV~f~~ 320 (460)
+.++.+.-+.+-+||+|+.. =+.++.|-+... .-||-+||....
T Consensus 129 ~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~--~~~~s~~~~~~~ 174 (187)
T cd01452 129 AKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN--GKDGSHLVSVPP 174 (187)
T ss_pred HHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc--CCCCceEEEeCC
Confidence 77777778999999999762 233333322222 136777776433
No 80
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.81 E-value=0.015 Score=58.21 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=80.4
Q ss_pred cceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCcccccCC
Q 012592 116 LESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYP 194 (460)
Q Consensus 116 le~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~-yD~D~~ip~fGFGa~~~~~~~vF~~~~ 194 (460)
.. +++++.||.|+|+. +..+.|...+...|.. +..+..+-++.|++.... ++.|.
T Consensus 52 ~p-~~vvlvlD~SgSM~-------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t- 107 (296)
T TIGR03436 52 LP-LTVGLVIDTSGSMR-------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT- 107 (296)
T ss_pred CC-ceEEEEEECCCCch-------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC-
Confidence 44 68999999999984 2245566666666655 566789999999986432 22232
Q ss_pred CCCccCCHHHHHHHHHHhcC-----------cceecCCCChHHHHHHHH-HHHHhcC----CceEEEEEEeCCccccCCC
Q 012592 195 DEKFCNGFEEVLRRYRELVP-----------HLRLAGPTSFAPIIEMAI-TIVEHSG----GQYHVLVIIADGQVTRSVD 258 (460)
Q Consensus 195 ~~~~c~G~egvl~~Yr~~l~-----------~v~LsGPT~FapVI~~a~-~~~~~s~----~~Y~VLlIiTDG~i~d~~d 258 (460)
...+.+.++-....+ .+...|.|.+..-|..+. +...+.. +. -++|+||||.-+.+.
T Consensus 108 -----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~~- 180 (296)
T TIGR03436 108 -----SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRSR- 180 (296)
T ss_pred -----CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcchH-
Confidence 234444444433322 123367788777765554 3333221 22 578999999754310
Q ss_pred cccCccchhHHHHHHHHHHhcCCCeEEEEEecCC
Q 012592 259 TEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 292 (460)
Q Consensus 259 ~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd 292 (460)
.+.+++++.+ .+.-+.|..||+|+
T Consensus 181 -------~~~~~~~~~~---~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 181 -------DTLERAIDAA---QRADVAIYSIDARG 204 (296)
T ss_pred -------HHHHHHHHHH---HHcCCEEEEeccCc
Confidence 1233444444 34467777888875
No 81
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.00083 Score=69.67 Aligned_cols=43 Identities=33% Similarity=0.796 Sum_probs=34.1
Q ss_pred CCCCCcccccccCC-----------Cc---ceeCCCCccchhhhhcC----CCCCcccccc
Q 012592 411 TSDNHVCPICLTDP-----------KD---MAFGCGHQTCCGCGQDL----DLCPICRSFI 453 (460)
Q Consensus 411 l~e~~~CpICl~~~-----------kd---vv~~CGH~fC~~Ci~~l----~~CPiCR~~I 453 (460)
..++..|-||++.. +| -.++|||.+--+|++.| .+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 34678999999862 12 34699999999999876 5899999984
No 82
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.47 E-value=0.049 Score=60.92 Aligned_cols=141 Identities=15% Similarity=0.215 Sum_probs=87.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~-~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
..++|.||.|+|+.- .+..+.|...+..++. .|-....+-+++|++... ..++++
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCC-----
Confidence 468899999999951 2456667766666653 466667899999975311 112222
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHh----cCCceEEEEEEeCCccccCCCcccCccchhHHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 273 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~----s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~ 273 (460)
-.+.+.+. +.+..+...|-|.++.-|..|.+.+.. ....=.++|+||||.-+.+ |. + ..-.++..+
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 12444433 244556678999999999999988773 2233467899999987642 11 1 011223333
Q ss_pred HHHHhcCCCeEEEEEecCCC
Q 012592 274 AIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 274 aIv~AS~~PLSIIiVGVGd~ 293 (460)
+-....+.-+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445677888888664
No 83
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0012 Score=72.22 Aligned_cols=42 Identities=29% Similarity=0.746 Sum_probs=34.6
Q ss_pred CCCCcccccccCCCc------ceeCCCCccchhhhhcC----CCCCcccccc
Q 012592 412 SDNHVCPICLTDPKD------MAFGCGHQTCCGCGQDL----DLCPICRSFI 453 (460)
Q Consensus 412 ~e~~~CpICl~~~kd------vv~~CGH~fC~~Ci~~l----~~CPiCR~~I 453 (460)
..+..|+||++.... ..++|||.||-.|+..| ..||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346799999998666 34699999999999877 4899999843
No 84
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0032 Score=63.15 Aligned_cols=42 Identities=29% Similarity=0.731 Sum_probs=34.4
Q ss_pred CCCcccccccCCCc-cee-CCCCccchhhhhcC------CCCCccccccc
Q 012592 413 DNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l------~~CPiCR~~I~ 454 (460)
...+|++|-+.+.. .+. +|||.+|..|+..- ..||.|-++..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45699999999998 444 79999999999743 38999988765
No 85
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.24 E-value=0.0022 Score=66.13 Aligned_cols=49 Identities=31% Similarity=0.762 Sum_probs=38.4
Q ss_pred CCCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC------CCCCccccccccc
Q 012592 408 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL------DLCPICRSFIQTR 456 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l------~~CPiCR~~I~~~ 456 (460)
....+++..|.||-+-..- .++||+|..|.-|+-++ +.|++||..-..+
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 3344667899999988777 45699999999999766 4899999865543
No 86
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0018 Score=68.50 Aligned_cols=45 Identities=24% Similarity=0.606 Sum_probs=37.5
Q ss_pred CCCCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
...+..|.||+..+-. ++.+|||.||..|+.+. ..||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3567899999998887 66799999999997654 489999988753
No 87
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0019 Score=66.72 Aligned_cols=46 Identities=33% Similarity=0.913 Sum_probs=37.6
Q ss_pred CCCCcccccccCCCccee-CCCCccchhhhhcC----CCCCcccccccccc
Q 012592 412 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQTRI 457 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv~-~CGH~fC~~Ci~~l----~~CPiCR~~I~~~i 457 (460)
.|+.+||||...+.+.+| ||+|.-|..|+.+. +.|=.|...+..++
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 466799999999999777 99999999999743 57888888776543
No 88
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.01 E-value=0.0035 Score=52.83 Aligned_cols=39 Identities=28% Similarity=0.694 Sum_probs=27.5
Q ss_pred cccccccCCCc--cee-CCCCccchhhhhcC-------CCCCccccccc
Q 012592 416 VCPICLTDPKD--MAF-GCGHQTCCGCGQDL-------DLCPICRSFIQ 454 (460)
Q Consensus 416 ~CpICl~~~kd--vv~-~CGH~fC~~Ci~~l-------~~CPiCR~~I~ 454 (460)
.||.|...-.+ +++ .|+|.|-..|+.++ ..||+||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34444433334 344 89999999999765 37999999875
No 89
>PRK10997 yieM hypothetical protein; Provisional
Probab=95.82 E-value=0.16 Score=55.31 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=85.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHH-HHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAI-SIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI-~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
-.+||.||-|+|+. |- .-.|.+|+ -.++.++.. ....+-++.|++..... .+.
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~--q~dr~~li~Fs~~i~~~----~l~---- 377 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALA--ENRRCYIMLFSTEVVTY----ELT---- 377 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHh--cCCCEEEEEecCCceee----ccC----
Confidence 46999999999994 21 12555553 333443322 22346688998864321 121
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 277 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~ 277 (460)
.-.|+..+++.-.. .+.|.|++++.++.+++.+++..-.=-.+|||+|+.... +++++.+.++.+.+
T Consensus 378 ~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~--------~~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQR--------LPDELVAKVKELQR 444 (487)
T ss_pred CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCC--------ChHHHHHHHHHHHH
Confidence 23588887776533 258999999999999988875422236789999996543 11234455555555
Q ss_pred hcCCCeEEEEEecCC-CCCccccccCC
Q 012592 278 ASEYPLSIILVGVGD-GPWDMMREFDD 303 (460)
Q Consensus 278 AS~~PLSIIiVGVGd-~~f~~M~~lDd 303 (460)
....=+--+.| |+ +.=+.|+.||.
T Consensus 445 ~~~~rf~~l~i--~~~~~p~l~~ifD~ 469 (487)
T PRK10997 445 QHQHRFHAVAM--SAHGKPGIMRIFDH 469 (487)
T ss_pred hcCcEEEEEEe--CCCCCchHHHhcCe
Confidence 44444444444 43 22234666664
No 90
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0038 Score=64.89 Aligned_cols=46 Identities=28% Similarity=0.609 Sum_probs=37.0
Q ss_pred CCCCcccccccCCCcce---------eCCCCccchhhhhcCC-----------CCCcccccccccc
Q 012592 412 SDNHVCPICLTDPKDMA---------FGCGHQTCCGCGQDLD-----------LCPICRSFIQTRI 457 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv---------~~CGH~fC~~Ci~~l~-----------~CPiCR~~I~~~i 457 (460)
..+.+|-||++...+.. .+|-|.||..|+..|. .||.||.+...++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 35679999999876644 3799999999998663 7999999876554
No 91
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=95.75 E-value=0.08 Score=61.14 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=83.3
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHH-hhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 121 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISII-GKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 121 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~I-g~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
++++||.|+|+... + ..+.-.+|+... ..+ +..+..+-++.|+....-. ..|.+-.
T Consensus 307 VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL~~~---l~~~DrVGLVtFsssA~vl---~pLt~It--- 363 (863)
T TIGR00868 307 VCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFLLQT---VEKGSWVGMVTFDSAAYIK---NELIQIT--- 363 (863)
T ss_pred EEEEEECCcccccc-------C-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCceeEe---eccccCC---
Confidence 88899999999521 0 134445555543 233 3456699999999864321 2222111
Q ss_pred CCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHH
Q 012592 200 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 277 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~--~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~ 277 (460)
. ....++-...++ ....|-|++..-|+.|.+..++... .=-.+++||||+-.+ ..+.+++
T Consensus 364 -s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~~l~~--- 425 (863)
T TIGR00868 364 -S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISSCFEE--- 425 (863)
T ss_pred -c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHHHHHH---
Confidence 1 122333333444 3367889999999999999876431 124668889998553 2233333
Q ss_pred hcCCCeEEEEEecCCCCCcccccc
Q 012592 278 ASEYPLSIILVGVGDGPWDMMREF 301 (460)
Q Consensus 278 AS~~PLSIIiVGVGd~~f~~M~~l 301 (460)
+....+.|-.||+|...=..|+++
T Consensus 426 lk~~gVtI~TIg~G~dad~~L~~I 449 (863)
T TIGR00868 426 VKQSGAIIHTIALGPSAAKELEEL 449 (863)
T ss_pred HHHcCCEEEEEEeCCChHHHHHHH
Confidence 334578888899997643444443
No 92
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=95.66 E-value=0.12 Score=50.18 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=73.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHH-HhhcccccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISI-IGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~-Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
..++|.+|.|+|+.. |...+.. +..+...+. .+-+|-|+.........+ .
T Consensus 58 ~~lvvl~DvSGSM~~--------------------~s~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l--~---- 108 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAG--------------------YSEFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLL--R---- 108 (222)
T ss_pred ccEEEEEeCCCChHH--------------------HHHHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhh--c----
Confidence 379999999999952 2222222 222333333 788999997654222111 1
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 277 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~ 277 (460)
-.+.++.+......... ++|-|+++..++++.+......-.-.++|||+||.-++ ..+...+.++.|.+
T Consensus 109 -~~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~--------~~~~~~~~l~~l~~ 177 (222)
T PF05762_consen 109 -RRDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTN--------DPEPLAEELRRLRR 177 (222)
T ss_pred -cCCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccC--------ChHHHHHHHHHHHH
Confidence 12445555554443333 88999999999999988764432458889999994333 12345566666665
Q ss_pred hc
Q 012592 278 AS 279 (460)
Q Consensus 278 AS 279 (460)
..
T Consensus 178 r~ 179 (222)
T PF05762_consen 178 RG 179 (222)
T ss_pred hC
Confidence 53
No 93
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.55 E-value=0.0066 Score=62.04 Aligned_cols=44 Identities=34% Similarity=0.778 Sum_probs=37.7
Q ss_pred CCCCCcccccccCCCcceeCC--CCccchhhhh-cCCCCCccccccc
Q 012592 411 TSDNHVCPICLTDPKDMAFGC--GHQTCCGCGQ-DLDLCPICRSFIQ 454 (460)
Q Consensus 411 l~e~~~CpICl~~~kdvv~~C--GH~fC~~Ci~-~l~~CPiCR~~I~ 454 (460)
..+-+.||||.+...-.++.| ||..|..|-. ....||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccc
Confidence 345589999999999988888 7999999985 4468999999987
No 94
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.24 E-value=0.0098 Score=46.23 Aligned_cols=43 Identities=23% Similarity=0.576 Sum_probs=35.1
Q ss_pred CCCcccccccCCCc-ceeCCCCccchhhhh--cCCCCCcccccccc
Q 012592 413 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQ--DLDLCPICRSFIQT 455 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~--~l~~CPiCR~~I~~ 455 (460)
....|..|....+. ++++|||..|..|-. +..-||+|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 45678889888666 778999999999975 44689999998864
No 95
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.75 E-value=0.0095 Score=57.43 Aligned_cols=41 Identities=29% Similarity=0.682 Sum_probs=33.4
Q ss_pred CcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 415 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
..|-||-..++. ++..|||.||..|+.+- ..|-+|......
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 699999998888 77799999999998633 489999775543
No 96
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.54 E-value=0.0062 Score=68.26 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=36.4
Q ss_pred CCCcccccccCCCc-ce---eCCCCccchhhhhcCC----CCCcccccccccc
Q 012592 413 DNHVCPICLTDPKD-MA---FGCGHQTCCGCGQDLD----LCPICRSFIQTRI 457 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv---~~CGH~fC~~Ci~~l~----~CPiCR~~I~~~i 457 (460)
....|++|+..+.+ .+ ..|+|.||..|+..|. .||+||..+..++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 34689999988877 22 3899999999998874 8999999887654
No 97
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.42 E-value=0.01 Score=60.89 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=37.6
Q ss_pred CCCCCcccccccCCCcce-e-CCCCccchhhhhc----CCCCCccccccccc
Q 012592 411 TSDNHVCPICLTDPKDMA-F-GCGHQTCCGCGQD----LDLCPICRSFIQTR 456 (460)
Q Consensus 411 l~e~~~CpICl~~~kdvv-~-~CGH~fC~~Ci~~----l~~CPiCR~~I~~~ 456 (460)
+....+|.+|-.++.|.+ + .|-|.||..|+-+ ...||.|...|...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 445679999999999943 3 9999999999964 46899999877654
No 98
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.026 Score=56.05 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=36.9
Q ss_pred CCCcccccccCCCc----cee-CCCCccchhhhhcCC----CCCccccccccc
Q 012592 413 DNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDLD----LCPICRSFIQTR 456 (460)
Q Consensus 413 e~~~CpICl~~~kd----vv~-~CGH~fC~~Ci~~l~----~CPiCR~~I~~~ 456 (460)
....||||.+...+ +++ +|||.+|.+|.+++. .||+|-.+...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 45799999998877 455 999999999999874 799999888654
No 99
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.88 E-value=0.033 Score=58.86 Aligned_cols=45 Identities=36% Similarity=0.927 Sum_probs=37.8
Q ss_pred CCCCCcccccccCCCcc-e-eCCCCccchhhhhcC----CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKDM-A-FGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kdv-v-~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
++++..|++|.....+. . ..|||.||..|+..+ ..||.||..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 67889999999999994 3 399999999999766 379999887654
No 100
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.026 Score=57.34 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=35.3
Q ss_pred CcccccccCCCc-ceeCCCCccchhhhhcC----CCCCccccccccc
Q 012592 415 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 456 (460)
Q Consensus 415 ~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ 456 (460)
..|-||...+.+ |+..|||.||..|+... ..|.+|.+.+...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 469999999998 77799999999998643 4799999877654
No 101
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=93.79 E-value=0.76 Score=44.44 Aligned_cols=138 Identities=19% Similarity=0.265 Sum_probs=76.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc--cC-CCCccceEeeCCCCC---CCCcccccC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS--FD-EDNLIPCFGFGDAST---HDQEVFSFY 193 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~--yD-~D~~ip~fGFGa~~~---~~~~vF~~~ 193 (460)
-+.+-+|.++|+- ++++|.. |.=.|.+ ...|.. |- +--.+-+.-||.... ..-++-+|+
T Consensus 5 P~~lllDtSgSM~--------Ge~Ieal----N~Glq~m---~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF~ 69 (207)
T COG4245 5 PCYLLLDTSGSMI--------GEPIEAL----NAGLQMM---IDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANFN 69 (207)
T ss_pred CEEEEEecCcccc--------cccHHHH----HHHHHHH---HHHHHhChhhhheeEEEEEEecCcceEEechhhHhhcC
Confidence 4678999999984 4577743 3322222 222221 10 112477788885321 111223343
Q ss_pred CCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc--------CCce-EEEEEEeCCccccCCCcccCcc
Q 012592 194 PDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--------GGQY-HVLVIIADGQVTRSVDTEHGQL 264 (460)
Q Consensus 194 ~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s--------~~~Y-~VLlIiTDG~i~d~~d~~~~~~ 264 (460)
+ |.+.-.|-|...-.|+.+.+.+++. .+.| .+..+||||..+|
T Consensus 70 ~-------------------p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD--------- 121 (207)
T COG4245 70 P-------------------PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD--------- 121 (207)
T ss_pred C-------------------CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch---------
Confidence 3 4456668899999999999988754 1334 3456789999998
Q ss_pred chhHHHH--HHHHHHhcCCCeEEEEEecCCCCCccccccC
Q 012592 265 SSQEKKT--VEAIVKASEYPLSIILVGVGDGPWDMMREFD 302 (460)
Q Consensus 265 ~~~~~~T--i~aIv~AS~~PLSIIiVGVGd~~f~~M~~lD 302 (460)
+.++- +-.--+++.--+-+..||+-..+-..++++-
T Consensus 122 --~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 122 --DWQAGAALVFQGERRAKSVAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred --HHHhHHHHhhhcccccceEEEEEecccccccHHHHHHH
Confidence 23333 3333334444444444444445655555543
No 102
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.025 Score=53.61 Aligned_cols=34 Identities=32% Similarity=0.888 Sum_probs=25.4
Q ss_pred cccccccCCCcceeCCCCccchhhhhcCC----CCCcccc
Q 012592 416 VCPICLTDPKDMAFGCGHQTCCGCGQDLD----LCPICRS 451 (460)
Q Consensus 416 ~CpICl~~~kdvv~~CGH~fC~~Ci~~l~----~CPiCR~ 451 (460)
.|--=+..+ ++++|||.||..|+..+. .||.||.
T Consensus 18 iC~~~~~~p--~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 18 ICLEYFREP--VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hhHHHhhcC--ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 444333434 677999999999998764 8999993
No 103
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.63 E-value=0.024 Score=43.00 Aligned_cols=37 Identities=41% Similarity=0.901 Sum_probs=17.8
Q ss_pred ccccccCCC--ccee---CCCCccchhhhhcCC-----CCCcccccc
Q 012592 417 CPICLTDPK--DMAF---GCGHQTCCGCGQDLD-----LCPICRSFI 453 (460)
Q Consensus 417 CpICl~~~k--dvv~---~CGH~fC~~Ci~~l~-----~CPiCR~~I 453 (460)
||+|.+... +..| +||++.|..|..++. .||.||++-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788988762 2333 789999999976543 799999864
No 104
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.49 E-value=0.049 Score=54.40 Aligned_cols=45 Identities=18% Similarity=0.473 Sum_probs=37.2
Q ss_pred CCCCCcccccccCCCc----cee-CCCCccchhhhhcCC---CCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDLD---LCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd----vv~-~CGH~fC~~Ci~~l~---~CPiCR~~I~~ 455 (460)
......|||+...+.. +.+ +|||.|+..|+..+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 3456899999988754 455 999999999999886 79999999864
No 105
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.025 Score=60.89 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=32.8
Q ss_pred CCCCcccccccCC-----------------Cc-ceeCCCCccchhhhhcCC-----CCCccccccc
Q 012592 412 SDNHVCPICLTDP-----------------KD-MAFGCGHQTCCGCGQDLD-----LCPICRSFIQ 454 (460)
Q Consensus 412 ~e~~~CpICl~~~-----------------kd-vv~~CGH~fC~~Ci~~l~-----~CPiCR~~I~ 454 (460)
+....|+||+..- ++ ++.||.|.|-..|++.|. .||.||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3456899999731 12 344999999999999773 7999999875
No 106
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=92.10 E-value=0.036 Score=60.13 Aligned_cols=43 Identities=23% Similarity=0.641 Sum_probs=35.0
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC---------CCCCccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL---------DLCPICRSFIQ 454 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l---------~~CPiCR~~I~ 454 (460)
.++.+|.+|-+...+ +...|.|.||+-|+... .+||.|...+.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 456799999999999 56699999999999532 48999976543
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.39 E-value=0.076 Score=54.96 Aligned_cols=42 Identities=31% Similarity=0.778 Sum_probs=30.8
Q ss_pred CCCcccccccCCCc--c-ee--CCCCccchhhhhcCC-----CCCccccccc
Q 012592 413 DNHVCPICLTDPKD--M-AF--GCGHQTCCGCGQDLD-----LCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kd--v-v~--~CGH~fC~~Ci~~l~-----~CPiCR~~I~ 454 (460)
++..||.|++.... - .+ +||.+.|.-|...++ .||.||...+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 44469999987532 2 23 789999999986553 8999998654
No 108
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=0.2 Score=51.72 Aligned_cols=49 Identities=27% Similarity=0.614 Sum_probs=34.5
Q ss_pred CCCCcccccccCCCc-cee-CCCCccchhhhhc----CCCCCcccccc--ccccccC
Q 012592 412 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQD----LDLCPICRSFI--QTRIKLY 460 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~----l~~CPiCR~~I--~~~irly 460 (460)
.+...||||+....+ .++ --|-.||..|+-. -..||+-.-+. +.-+|+|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 345699999998877 554 5699999999964 35899755443 3344443
No 109
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.74 E-value=0.087 Score=59.46 Aligned_cols=40 Identities=33% Similarity=0.877 Sum_probs=32.3
Q ss_pred CcccccccCCCc-ceeCCCCccchhhhhcC------CCCCcccccccc
Q 012592 415 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL------DLCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l------~~CPiCR~~I~~ 455 (460)
..|.+|++ ... +...|||.+|.+|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 444 45599999999999754 269999987654
No 110
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=0.16 Score=51.33 Aligned_cols=42 Identities=21% Similarity=0.566 Sum_probs=32.1
Q ss_pred CCCcccccccCCCc-----------ceeCCCCccchhhhhcC------CCCCccccccc
Q 012592 413 DNHVCPICLTDPKD-----------MAFGCGHQTCCGCGQDL------DLCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kd-----------vv~~CGH~fC~~Ci~~l------~~CPiCR~~I~ 454 (460)
++..|.||-..... -.+.|+|.|-..|++.| .+||-|++.++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45689999764322 23699999999999876 48999998775
No 111
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=88.34 E-value=4.7 Score=43.60 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=83.1
Q ss_pred cCcceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHH--HHH-HHHhhcccccCCCCccceEeeCCCCCCCCccc
Q 012592 114 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYE--QAI-SIIGKTLSSFDEDNLIPCFGFGDASTHDQEVF 190 (460)
Q Consensus 114 ~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq--~AI-~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF 190 (460)
++.+ --+++-||=|+|+.- +.++ +|+ -++.++... +++.+-++-|-.. +|
T Consensus 269 gk~~-GpvilllD~SGSM~G------------------~~e~~AKAvalAl~~~ala--enR~~~~~lF~s~------~~ 321 (437)
T COG2425 269 GKSE-GPVILLLDKSGSMSG------------------FKEQWAKAVALALMRIALA--ENRDCYVILFDSE------VI 321 (437)
T ss_pred cCCC-CCEEEEEeCCCCcCC------------------cHHHHHHHHHHHHHHHHHH--hccceEEEEeccc------ce
Confidence 4444 479999999999952 2232 221 222232222 3455777888662 22
Q ss_pred ccCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC-CceEEEEEEeCCccccCCCcccCccchhHH
Q 012592 191 SFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG-GQYHVLVIIADGQVTRSVDTEHGQLSSQEK 269 (460)
Q Consensus 191 ~~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~-~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 269 (460)
..- ..+...|++++++- +..+--+| |+|...|..|++.+++.. .+ .=||+||||.-.. +.+..
T Consensus 322 ~~e-l~~k~~~~~e~i~f----L~~~f~GG-TD~~~~l~~al~~~k~~~~~~-adiv~ITDg~~~~---------~~~~~ 385 (437)
T COG2425 322 EYE-LYEKKIDIEELIEF----LSYVFGGG-TDITKALRSALEDLKSRELFK-ADIVVITDGEDER---------LDDFL 385 (437)
T ss_pred eee-ecCCccCHHHHHHH----HhhhcCCC-CChHHHHHHHHHHhhcccccC-CCEEEEeccHhhh---------hhHHH
Confidence 111 12345699999884 33332335 999999999999998653 23 4459999997543 13567
Q ss_pred HHHHHHHHhcCCCeEEEEEe
Q 012592 270 KTVEAIVKASEYPLSIILVG 289 (460)
Q Consensus 270 ~Ti~aIv~AS~~PLSIIiVG 289 (460)
..++.+.++++.=+--|+||
T Consensus 386 ~~v~e~~k~~~~rl~aV~I~ 405 (437)
T COG2425 386 RKVKELKKRRNARLHAVLIG 405 (437)
T ss_pred HHHHHHHHHhhceEEEEEec
Confidence 88888888888776666654
No 112
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=0.1 Score=43.26 Aligned_cols=41 Identities=29% Similarity=0.605 Sum_probs=30.4
Q ss_pred CCcccccccCCCc--cee-CCCCccchhhhhcCC-------CCCccccccc
Q 012592 414 NHVCPICLTDPKD--MAF-GCGHQTCCGCGQDLD-------LCPICRSFIQ 454 (460)
Q Consensus 414 ~~~CpICl~~~kd--vv~-~CGH~fC~~Ci~~l~-------~CPiCR~~I~ 454 (460)
+..||-|.-.-.| .++ -|.|.|-..|+.++. .||+||+..+
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4566666655555 344 799999999998762 7999998764
No 113
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.98 E-value=0.22 Score=50.92 Aligned_cols=37 Identities=32% Similarity=0.727 Sum_probs=31.2
Q ss_pred CcccccccCCCc-cee-CCCCccchhhhhcC-----CCCCcccc
Q 012592 415 HVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRS 451 (460)
Q Consensus 415 ~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l-----~~CPiCR~ 451 (460)
+.|+.|--...+ +.. .|+|.||.+|+... ..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 689999999888 555 79999999999843 58999965
No 114
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.49 E-value=0.16 Score=41.13 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=20.0
Q ss_pred CCcccccccCCC-c---cee-----CCCCccchhhhhcCC---------------CCCccccccccc
Q 012592 414 NHVCPICLTDPK-D---MAF-----GCGHQTCCGCGQDLD---------------LCPICRSFIQTR 456 (460)
Q Consensus 414 ~~~CpICl~~~k-d---vv~-----~CGH~fC~~Ci~~l~---------------~CPiCR~~I~~~ 456 (460)
+..|.||+.... + ..+ .|++.|-..|+.+|. .||.|+++|+-+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999998754 2 122 577777779986541 599999998643
No 115
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=87.20 E-value=0.29 Score=38.20 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=23.7
Q ss_pred CCCcccccccCCCc-cee-CCCCccchhhhhcCC------CCCc
Q 012592 413 DNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDLD------LCPI 448 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l~------~CPi 448 (460)
-...|||.+..+++ +.- .|||.|..+.+..+. .||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999999999 443 999999999987542 6887
No 116
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=0.21 Score=52.93 Aligned_cols=29 Identities=31% Similarity=0.738 Sum_probs=23.9
Q ss_pred CCcccccccCCCc---cee-CCCCccchhhhhc
Q 012592 414 NHVCPICLTDPKD---MAF-GCGHQTCCGCGQD 442 (460)
Q Consensus 414 ~~~CpICl~~~kd---vv~-~CGH~fC~~Ci~~ 442 (460)
...|.||++...- +.+ ||+|.||..|+.+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kd 216 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKD 216 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHH
Confidence 4689999998765 444 9999999999964
No 117
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.41 E-value=0.47 Score=39.91 Aligned_cols=31 Identities=23% Similarity=0.644 Sum_probs=24.6
Q ss_pred CCCCcccccccCCCc---ceeCCCCccchhhhhc
Q 012592 412 SDNHVCPICLTDPKD---MAFGCGHQTCCGCGQD 442 (460)
Q Consensus 412 ~e~~~CpICl~~~kd---vv~~CGH~fC~~Ci~~ 442 (460)
.+...|.+|-....+ +++||||.+...|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 455689999998776 4569999999999753
No 118
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=84.47 E-value=18 Score=34.49 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=78.1
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCC-------Cccc
Q 012592 121 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHD-------QEVF 190 (460)
Q Consensus 121 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~---yD~D~~ip~fGFGa~~~~~-------~~vF 190 (460)
+++.||.+.|+..... +. ..+.+.|++.|-.+++. ..+.-.+-++.||...+.+ .+||
T Consensus 2 ~vflID~s~sM~~~~~-----------~~-~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSS-----------ES-ESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS-BT-----------TC-S-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCCCC-----------Cc-chhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 6899999999963210 11 11788888888776653 3333579999999876643 4455
Q ss_pred ccCCCCCccCCHHHHHHHHHHhcC------cceecCCCChHHHHHHHHHHHHh--cCCce--EEEEEEeCCccccCCCcc
Q 012592 191 SFYPDEKFCNGFEEVLRRYRELVP------HLRLAGPTSFAPIIEMAITIVEH--SGGQY--HVLVIIADGQVTRSVDTE 260 (460)
Q Consensus 191 ~~~~~~~~c~G~egvl~~Yr~~l~------~v~LsGPT~FapVI~~a~~~~~~--s~~~Y--~VLlIiTDG~i~d~~d~~ 260 (460)
.+.+-+. -+++.+.+.-....+ ...-.....+..++-.+..+..+ ...++ --+++|||++--.
T Consensus 70 ~l~~l~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~----- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH----- 142 (224)
T ss_dssp EEEECC----BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT-----
T ss_pred EeecCCc--cCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC-----
Confidence 5543221 133333221111100 00012345677777778777654 22332 4557789875321
Q ss_pred cCccchhHHHHHHH--HHHhcCCCeEEEEEec
Q 012592 261 HGQLSSQEKKTVEA--IVKASEYPLSIILVGV 290 (460)
Q Consensus 261 ~~~~~~~~~~Ti~a--Iv~AS~~PLSIIiVGV 290 (460)
+ =.++.+.+++. ..+....-+.|.++.+
T Consensus 143 -~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 143 -E-DDDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp -T--CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred -C-CHHHHHHHHHhhccccchhcCcceeEeec
Confidence 1 12246666666 6667778888888888
No 119
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=82.82 E-value=7.8 Score=39.20 Aligned_cols=145 Identities=16% Similarity=0.225 Sum_probs=92.8
Q ss_pred cCcceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHH-Hhh-cccccCCCCccceEeeCCCCCCCCcccc
Q 012592 114 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISI-IGK-TLSSFDEDNLIPCFGFGDASTHDQEVFS 191 (460)
Q Consensus 114 ~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~-Ig~-il~~yD~D~~ip~fGFGa~~~~~~~vF~ 191 (460)
.|=...=++++||-|+|+.- +.=.+|.+. +.. +-..|-.-..+-+.+|=..- .++ -
T Consensus 74 ~~r~g~lvvfvVDASgSM~~------------------~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~---A~l-l 131 (261)
T COG1240 74 EGRAGNLIVFVVDASGSMAA------------------RRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEK---AEL-L 131 (261)
T ss_pred ccCcCCcEEEEEeCcccchh------------------HHHHHHHHHHHHHHHHHHHHccceEEEEEecCCc---ceE-E
Confidence 34443447789999999962 211223332 222 22456666788888885421 121 1
Q ss_pred cCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCccccCCCcccCccchh
Q 012592 192 FYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQ 267 (460)
Q Consensus 192 ~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~~ 267 (460)
+.| -..++.+- +.+..+.-.|-|-.++-|.++.++..+.. ..-.|+|+||||..++.. .+.+
T Consensus 132 l~p----T~sv~~~~----~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~-----~~~~- 197 (261)
T COG1240 132 LPP----TSSVELAE----RALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPI-----PLGP- 197 (261)
T ss_pred eCC----cccHHHHH----HHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCC-----CCch-
Confidence 112 22444443 34556777899999999999999875442 355788999999977522 1222
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCC
Q 012592 268 EKKTVEAIVKASEYPLSIILVGVGDGP 294 (460)
Q Consensus 268 ~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 294 (460)
+.+|.++-.++...++-+++|....+.
T Consensus 198 ~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 198 KAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 678888888888888888998887765
No 120
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=82.47 E-value=0.53 Score=48.43 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=23.0
Q ss_pred eeCCCCccchhhhhcC--CCCCcccccccc
Q 012592 428 AFGCGHQTCCGCGQDL--DLCPICRSFIQT 455 (460)
Q Consensus 428 v~~CGH~fC~~Ci~~l--~~CPiCR~~I~~ 455 (460)
.++|.|.||.+|+..- +.||.|-.++.+
T Consensus 106 mIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred ccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 4599999999999744 589999877654
No 121
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.58 E-value=0.49 Score=54.80 Aligned_cols=44 Identities=30% Similarity=0.607 Sum_probs=32.6
Q ss_pred CCCCcccccccCCC--ccee------CCCCccchhhhhcC------CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPK--DMAF------GCGHQTCCGCGQDL------DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~k--dvv~------~CGH~fC~~Ci~~l------~~CPiCR~~I~~ 455 (460)
....+|+||..... +-.+ .|.|.|-..|+-+| .+||+||..|+-
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44579999987643 2222 57799999999877 389999988763
No 122
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=79.48 E-value=0.35 Score=49.53 Aligned_cols=40 Identities=30% Similarity=0.678 Sum_probs=30.2
Q ss_pred CcccccccCCCc----ceeCCCCccchhhhhcC---------------------------CCCCccccccc
Q 012592 415 HVCPICLTDPKD----MAFGCGHQTCCGCGQDL---------------------------DLCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l---------------------------~~CPiCR~~I~ 454 (460)
..|.|||--+.+ ++..|-|.+-+.|+.+. ..||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 578899887766 33499999988887421 16999999885
No 123
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=77.89 E-value=1.6 Score=45.89 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=17.4
Q ss_pred CCCccchhhhhcCC-----------------CCCcccccccc
Q 012592 431 CGHQTCCGCGQDLD-----------------LCPICRSFIQT 455 (460)
Q Consensus 431 CGH~fC~~Ci~~l~-----------------~CPiCR~~I~~ 455 (460)
|.-+.|.+|+-+|. .||+||+.+.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 44455778875541 69999998753
No 124
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=77.16 E-value=0.82 Score=55.06 Aligned_cols=44 Identities=27% Similarity=0.702 Sum_probs=32.1
Q ss_pred CCCCcccccccCCCc----ceeCCCCccchhhhhc-----C---------CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD----MAFGCGHQTCCGCGQD-----L---------DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~-----l---------~~CPiCR~~I~~ 455 (460)
..+..|.||+...-. +.+.|+|.|-..|.++ | ..||+|.++|.-
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345689999986433 4569999997777642 2 279999998864
No 125
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=73.05 E-value=2.1 Score=36.08 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=29.0
Q ss_pred CcccccccCCC---c--cee-CCCCccchhhhhcCC----CCCccccccc
Q 012592 415 HVCPICLTDPK---D--MAF-GCGHQTCCGCGQDLD----LCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~~k---d--vv~-~CGH~fC~~Ci~~l~----~CPiCR~~I~ 454 (460)
..|+-|..... + ++. -|.|.|--.|+.++. .||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 46666665322 2 334 799999999999873 7999998764
No 126
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=73.00 E-value=1.7 Score=33.06 Aligned_cols=42 Identities=33% Similarity=0.749 Sum_probs=22.1
Q ss_pred cccccccCCCcceeCCC-CccchhhhhcC----CCCCccccccccccc
Q 012592 416 VCPICLTDPKDMAFGCG-HQTCCGCGQDL----DLCPICRSFIQTRIK 458 (460)
Q Consensus 416 ~CpICl~~~kdvv~~CG-H~fC~~Ci~~l----~~CPiCR~~I~~~ir 458 (460)
-|.-|.-..+. .+.|. |..|-.|+..+ ..||+|..++.+++|
T Consensus 4 nCKsCWf~~k~-Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANKG-LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--SS-EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred cChhhhhcCCC-eeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 47777754444 33575 77899999866 379999999988775
No 127
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=72.95 E-value=1.3 Score=40.53 Aligned_cols=41 Identities=29% Similarity=0.848 Sum_probs=32.7
Q ss_pred CcccccccCCCccee-----CCCCccchhhhhcC-------CCCCcccccccc
Q 012592 415 HVCPICLTDPKDMAF-----GCGHQTCCGCGQDL-------DLCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~kdvv~-----~CGH~fC~~Ci~~l-------~~CPiCR~~I~~ 455 (460)
-+|-||.+...+-.| -||-..|--|-..+ ..||.|+..+..
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 489999998888443 58999999887654 389999998865
No 128
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=72.29 E-value=0.67 Score=55.22 Aligned_cols=41 Identities=44% Similarity=1.067 Sum_probs=33.8
Q ss_pred CCCCcccccccCCCc--ceeCCCCccchhhhhcC----CCCCccccc
Q 012592 412 SDNHVCPICLTDPKD--MAFGCGHQTCCGCGQDL----DLCPICRSF 452 (460)
Q Consensus 412 ~e~~~CpICl~~~kd--vv~~CGH~fC~~Ci~~l----~~CPiCR~~ 452 (460)
.+...|.||++..++ .++.|||.+||.|...+ ..||+|..-
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 344699999999886 67799999999999866 489999753
No 129
>PHA03096 p28-like protein; Provisional
Probab=72.00 E-value=1.2 Score=45.39 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=22.7
Q ss_pred CcccccccCCCc--------cee-CCCCccchhhhhcC
Q 012592 415 HVCPICLTDPKD--------MAF-GCGHQTCCGCGQDL 443 (460)
Q Consensus 415 ~~CpICl~~~kd--------vv~-~CGH~fC~~Ci~~l 443 (460)
..|.||+++... -.+ .|-|.||-.|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 589999987432 234 89999999999865
No 130
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=71.94 E-value=2.2 Score=32.21 Aligned_cols=35 Identities=26% Similarity=0.697 Sum_probs=24.5
Q ss_pred cccccccCCC--c-ceeCCC-----CccchhhhhcC------CCCCccc
Q 012592 416 VCPICLTDPK--D-MAFGCG-----HQTCCGCGQDL------DLCPICR 450 (460)
Q Consensus 416 ~CpICl~~~k--d-vv~~CG-----H~fC~~Ci~~l------~~CPiCR 450 (460)
.|.||++... + .+.||. |.+-..|+.+| ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998322 2 444885 56777999876 2799994
No 131
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.93 E-value=1.7 Score=49.98 Aligned_cols=41 Identities=29% Similarity=0.578 Sum_probs=32.3
Q ss_pred CcccccccCCCc--ceeCCCCccchhhhhc-CCCCCcccccccc
Q 012592 415 HVCPICLTDPKD--MAFGCGHQTCCGCGQD-LDLCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~kd--vv~~CGH~fC~~Ci~~-l~~CPiCR~~I~~ 455 (460)
..|..|-....- |-|.|||.+-..|+.+ ...||.|+.....
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRG 884 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhh
Confidence 489999876655 4469999999999984 4689999875443
No 132
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=70.79 E-value=12 Score=36.92 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=33.5
Q ss_pred CCceEEEEEEeCCccccCC---CcccCccchhHHHHHHHHHHhcCCCeEEEEEecCC
Q 012592 239 GGQYHVLVIIADGQVTRSV---DTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 292 (460)
Q Consensus 239 ~~~Y~VLlIiTDG~i~d~~---d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd 292 (460)
..+=-||++|+||...|.. +-...-|..+++++++.|.. .-++-++-||||.
T Consensus 133 ~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~--~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 133 PEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIET--RSDVELIAIGIGH 187 (219)
T ss_pred CccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhc--cCCcEEEEEEcCC
Confidence 3345699999999998621 11122355566666666653 3477788888886
No 133
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=67.50 E-value=1.5 Score=49.51 Aligned_cols=45 Identities=31% Similarity=0.610 Sum_probs=36.1
Q ss_pred CCCCCcccccccCCCc-ceeCCCCccchhhhhcC-------CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-------~~CPiCR~~I~~ 455 (460)
.....+|+||+...+. +.+.|-|.||..|+..+ ..||+|+..+..
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 3456799999998887 56799999999998644 379999976654
No 134
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=67.14 E-value=1.5 Score=40.14 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=24.0
Q ss_pred CCcccccccCCCc----ceeCCC------CccchhhhhcC
Q 012592 414 NHVCPICLTDPKD----MAFGCG------HQTCCGCGQDL 443 (460)
Q Consensus 414 ~~~CpICl~~~kd----vv~~CG------H~fC~~Ci~~l 443 (460)
..+|.||++.-.+ +.+.|| |.||.+|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 4689999997544 445887 78999999988
No 135
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.55 E-value=3.6 Score=42.11 Aligned_cols=30 Identities=27% Similarity=0.790 Sum_probs=25.2
Q ss_pred CCCcccccccCCCccee-CC----CCccchhhhhc
Q 012592 413 DNHVCPICLTDPKDMAF-GC----GHQTCCGCGQD 442 (460)
Q Consensus 413 e~~~CpICl~~~kdvv~-~C----GH~fC~~Ci~~ 442 (460)
..+.|-+|.+...|.-| .| .|.||.-|.+.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSRe 301 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRE 301 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHH
Confidence 44899999999999776 88 59999999863
No 136
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.21 E-value=2.4 Score=44.91 Aligned_cols=40 Identities=28% Similarity=0.515 Sum_probs=31.4
Q ss_pred CCcccccccCCCc----ceeCCCCccchhhhhcC-------CCCCcccccc
Q 012592 414 NHVCPICLTDPKD----MAFGCGHQTCCGCGQDL-------DLCPICRSFI 453 (460)
Q Consensus 414 ~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l-------~~CPiCR~~I 453 (460)
-..|||=.+...+ +.+.|||..|.+-+.++ .+||.|-...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 3689998877554 77899999999998766 3799996543
No 137
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.75 E-value=1.1e+02 Score=37.19 Aligned_cols=147 Identities=14% Similarity=0.248 Sum_probs=91.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
-.+.|-+|-++|.. +..+| -|-..+-.+|.-+.+|.-+-..-|+-.......|| .+..
T Consensus 226 KdiviLlD~SgSm~--------g~~~~----------lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~----~~~l 283 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--------GLRLD----------LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCF----NGTL 283 (1104)
T ss_pred cceEEEEecccccc--------chhhH----------HHHHHHHHHHHhcccCCeEEEEeeccccCcccccc----cCce
Confidence 47888999999984 22333 33444555666666676777777876544333332 2334
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc---------CCceEEEEEEeCCccccCCCcccCccchhHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS---------GGQYHVLVIIADGQVTRSVDTEHGQLSSQEK 269 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s---------~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 269 (460)
+++--.-.+..++.+..+...|-++|.-+.+.|.+..... +.-+.+.++||||...+ -+
T Consensus 284 vqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~ 351 (1104)
T KOG2353|consen 284 VQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AK 351 (1104)
T ss_pred eecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc------------HH
Confidence 4444455666677788888889999999999998875432 11578889999999765 23
Q ss_pred HHHHHHHHh-cCCCeEEEEEecCCCCCcccc
Q 012592 270 KTVEAIVKA-SEYPLSIILVGVGDGPWDMMR 299 (460)
Q Consensus 270 ~Ti~aIv~A-S~~PLSIIiVGVGd~~f~~M~ 299 (460)
+..+.--.- -..-++=.+||-+..+|+.++
T Consensus 352 ~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 352 EIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred HHHHhhccCCCceEEEEEEecccccccccch
Confidence 333322221 123345566666666666543
No 138
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=57.64 E-value=30 Score=38.57 Aligned_cols=166 Identities=14% Similarity=0.203 Sum_probs=96.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCC---CCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCC---CCcccccC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGD---DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTH---DQEVFSFY 193 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~---~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~---~~~vF~~~ 193 (460)
-|.+-||.|.|.... .++ ..--..+|+..++.-++.-.+- ..+|+|-.+... -+.|-.|+
T Consensus 448 a~TLLvD~S~St~a~------------mdetrRvidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~FD 513 (637)
T COG4548 448 AFTLLVDVSASTDAK------------MDETRRVIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKDFD 513 (637)
T ss_pred eeEEEeecccchHHH------------hhhhhhhHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeeccc
Confidence 478899999998521 111 1234556666666554443322 334555443221 12222232
Q ss_pred CCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHH
Q 012592 194 PDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 273 (460)
Q Consensus 194 ~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~ 273 (460)
+..-.-++. .+-.++..--|--...|++|.+..-...+.=-.|+++|||...| +|--.|+. -...|.+
T Consensus 514 --es~~~~~~~-------RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd-~d~YEgr~--gIeDTr~ 581 (637)
T COG4548 514 --ESMGETVGP-------RIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND-FDHYEGRF--GIEDTRE 581 (637)
T ss_pred --cccccccch-------hheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc-cccccccc--chhhHHH
Confidence 111111111 12234444457778889999877655445567889999999997 66334444 3688999
Q ss_pred HHHHhcCCCeEEEEEecCCCCCccccccCCCCCccccceeeeec
Q 012592 274 AIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVN 317 (460)
Q Consensus 274 aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd~~~~R~~DnvqFV~ 317 (460)
|+.+|-+.-|+++-|=|-...-+.+-.+-+ .|.+-||.
T Consensus 582 AV~eaRk~Gi~VF~Vtld~ea~~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 582 AVIEARKSGIEVFNVTLDREAISYLPALFG------QNGYAFVE 619 (637)
T ss_pred HHHHHHhcCceEEEEEecchhhhhhHHHhc------cCceEEcc
Confidence 999999999999999887765443332211 26667775
No 139
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=55.75 E-value=7.7 Score=29.38 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=17.8
Q ss_pred CcccccccCCCcce-e-CCCCccchhhhh--------cCCCCCccccc
Q 012592 415 HVCPICLTDPKDMA-F-GCGHQTCCGCGQ--------DLDLCPICRSF 452 (460)
Q Consensus 415 ~~CpICl~~~kdvv-~-~CGH~fC~~Ci~--------~l~~CPiCR~~ 452 (460)
+.||+.....+..+ - .|.|.-|.+=.. ..+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 57999998877733 3 899998774321 23589999864
No 140
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=55.29 E-value=1.7e+02 Score=32.94 Aligned_cols=152 Identities=13% Similarity=0.229 Sum_probs=88.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCC----CCccccc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSF 192 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~---yD~D~~ip~fGFGa~~~~----~~~vF~~ 192 (460)
-+++.||.|.|+-.. . .. .+...+.+.|++.|-.+++. +.+.-+|-++-||...+. ..+|+-+
T Consensus 12 ailflIDvs~sM~~~---~---~~----~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE---S---QG----EDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC---C---cC----cCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 599999999998521 0 01 11357888888888776553 455669999999987654 2355444
Q ss_pred CC-CCCccCCHHHHHHHHHHhcCc---------ceecCCCChHHHHHHHHHHHHhcCCce--EEEEEEeCCccccCCCcc
Q 012592 193 YP-DEKFCNGFEEVLRRYRELVPH---------LRLAGPTSFAPIIEMAITIVEHSGGQY--HVLVIIADGQVTRSVDTE 260 (460)
Q Consensus 193 ~~-~~~~c~G~egvl~~Yr~~l~~---------v~LsGPT~FapVI~~a~~~~~~s~~~Y--~VLlIiTDG~i~d~~d~~ 260 (460)
++ +.| +++.|.+. ....+. ...+...+++.++-.++++....+.+| -=+++|||-+ .+
T Consensus 82 ~~L~~p---~a~~i~~L-~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D------~P 151 (584)
T TIGR00578 82 QELDNP---GAKRILEL-DQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED------NP 151 (584)
T ss_pred eeCCCC---CHHHHHHH-HHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC------CC
Confidence 43 333 33333221 111111 111122478999998888876433233 2357888743 33
Q ss_pred cCccchhHHHHHHHHHHhcCCCeEEEEEecC
Q 012592 261 HGQLSSQEKKTVEAIVKASEYPLSIILVGVG 291 (460)
Q Consensus 261 ~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVG 291 (460)
|+.=+...+.+..-+.+..++-+.|-++.+.
T Consensus 152 ~~~~~~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 152 HGNDSAKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred CCCchhHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 3332222344444566777889999888775
No 141
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=52.26 E-value=14 Score=42.81 Aligned_cols=43 Identities=28% Similarity=0.508 Sum_probs=32.4
Q ss_pred CCCcccccccCCCc--cee---CCCCccchhhhhcC-----------CCCCcccccccc
Q 012592 413 DNHVCPICLTDPKD--MAF---GCGHQTCCGCGQDL-----------DLCPICRSFIQT 455 (460)
Q Consensus 413 e~~~CpICl~~~kd--vv~---~CGH~fC~~Ci~~l-----------~~CPiCR~~I~~ 455 (460)
+..+|.||.+..+. -+. .|-|.|-..|+.+| +.||.|+.....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~ 248 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKT 248 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhcc
Confidence 34789999998665 344 56699988999766 589999865443
No 142
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.98 E-value=6.8 Score=41.60 Aligned_cols=29 Identities=34% Similarity=0.926 Sum_probs=21.3
Q ss_pred CCcccccc-cCCCc-c---eeCCCCccchhhhhc
Q 012592 414 NHVCPICL-TDPKD-M---AFGCGHQTCCGCGQD 442 (460)
Q Consensus 414 ~~~CpICl-~~~kd-v---v~~CGH~fC~~Ci~~ 442 (460)
...|.||. +.... . +..|+|.||.+|..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~ 179 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQ 179 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHH
Confidence 46899999 44333 2 337999999999973
No 143
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=51.03 E-value=2.9 Score=34.27 Aligned_cols=37 Identities=32% Similarity=0.861 Sum_probs=18.2
Q ss_pred CcccccccCCCcceeCCCCccchhhhhcCC---CCCccccccc
Q 012592 415 HVCPICLTDPKDMAFGCGHQTCCGCGQDLD---LCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~~kdvv~~CGH~fC~~Ci~~l~---~CPiCR~~I~ 454 (460)
..||.|....... . ||..|..|..+.. .||-|.++++
T Consensus 2 ~~CP~C~~~L~~~--~-~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--G-GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--T-TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--C-CEEECccccccceecccCCCcccHHH
Confidence 5799998753322 1 6667777776543 6777777654
No 144
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=50.39 E-value=5.2 Score=42.61 Aligned_cols=42 Identities=29% Similarity=0.652 Sum_probs=0.0
Q ss_pred CCcccccccC--------------CCc-----cee-CCCCccchhhhhcC-------------CCCCcccccccc
Q 012592 414 NHVCPICLTD--------------PKD-----MAF-GCGHQTCCGCGQDL-------------DLCPICRSFIQT 455 (460)
Q Consensus 414 ~~~CpICl~~--------------~kd-----vv~-~CGH~fC~~Ci~~l-------------~~CPiCR~~I~~ 455 (460)
..+||+|+.. ..| -+| ||||.+-...+.-| ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 5799999862 122 345 99998655666543 169999998875
No 145
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=47.32 E-value=46 Score=37.55 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeCCccccCCCcc-----cCccchhHHHHHHHHHHhcCC-CeEEEEEecCCC
Q 012592 227 IIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTE-----HGQLSSQEKKTVEAIVKASEY-PLSIILVGVGDG 293 (460)
Q Consensus 227 VI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~-----~~~~~~~~~~Ti~aIv~AS~~-PLSIIiVGVGd~ 293 (460)
.|.-|.+...+...+=-|||+|+||+..| |-+ .+-|-.+++++|..| ... ++=++-||||..
T Consensus 501 Al~wa~~rL~~R~e~rKiL~ViSDG~P~D--~~TlsvN~~~~l~~hLr~vi~~~---e~~~~vel~aigIg~D 568 (600)
T TIGR01651 501 ALMWAHQRLIARPEQRRILMMISDGAPVD--DSTLSVNPGNYLERHLRAVIEEI---ETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHHhcCcccceEEEEEeCCCcCC--ccccccCchhHHHHHHHHHHHHH---hccCCceEEEeecccc
Confidence 33444443334445568999999999986 211 223433344444444 343 788888888873
No 146
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=47.22 E-value=12 Score=43.31 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=25.5
Q ss_pred CcccccccCCCc--cee---CCCCccchhhhhcC----------CCCCccccccc
Q 012592 415 HVCPICLTDPKD--MAF---GCGHQTCCGCGQDL----------DLCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~~kd--vv~---~CGH~fC~~Ci~~l----------~~CPiCR~~I~ 454 (460)
..|-+|+....| -.. .|+|.+|..|+..+ ..|+.|..-|.
T Consensus 100 ~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 100 PVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred chhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 356666665443 112 59999999999754 25777765443
No 147
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=46.39 E-value=15 Score=28.36 Aligned_cols=21 Identities=33% Similarity=0.920 Sum_probs=13.3
Q ss_pred CCCCccchhhhh----cCCCCCccc
Q 012592 430 GCGHQTCCGCGQ----DLDLCPICR 450 (460)
Q Consensus 430 ~CGH~fC~~Ci~----~l~~CPiCR 450 (460)
.|++.||.+|-. .+.+||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 688999999973 567999994
No 148
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=45.29 E-value=14 Score=38.48 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=32.5
Q ss_pred CCcccccccCCCccee-CCCCc-cchhhhhcC--CCCCcccccccccc
Q 012592 414 NHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDL--DLCPICRSFIQTRI 457 (460)
Q Consensus 414 ~~~CpICl~~~kdvv~-~CGH~-fC~~Ci~~l--~~CPiCR~~I~~~i 457 (460)
..+|-+|-......++ +|+|+ ||.+|+.-. ..||.|....-..+
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~ 390 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLV 390 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeee
Confidence 3689999887776554 99999 788999743 48999976544333
No 149
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=45.03 E-value=16 Score=38.14 Aligned_cols=41 Identities=34% Similarity=0.802 Sum_probs=30.8
Q ss_pred CcccccccCC--Cc-cee--CCCCccchhhhhcC----CCCCcccccccc
Q 012592 415 HVCPICLTDP--KD-MAF--GCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~--kd-vv~--~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
..|++|.+.. .+ ..+ +||+..|..|.... ..||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 4799998854 23 334 78999999998766 389999987654
No 150
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=44.58 E-value=1.8e+02 Score=28.41 Aligned_cols=97 Identities=26% Similarity=0.421 Sum_probs=56.5
Q ss_pred cHHHHHHHHHhcCcceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCC
Q 012592 103 SLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDA 182 (460)
Q Consensus 103 ~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~ 182 (460)
++++| ++|.++|.+ |||+|.|.... |.+|+ +.-+.|+ +.| ++-++|
T Consensus 53 T~~ev-~~l~~aGad----IIAlDaT~R~R--------p~~l~-------~li~~i~------~~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEV-DALAEAGAD----IIALDATDRPR--------PETLE-------ELIREIK------EKY-------QLVMAD- 98 (192)
T ss_dssp SHHHH-HHHHHCT-S----EEEEE-SSSS---------SS-HH-------HHHHHHH------HCT-------SEEEEE-
T ss_pred CHHHH-HHHHHcCCC----EEEEecCCCCC--------CcCHH-------HHHHHHH------HhC-------cEEeee-
Confidence 67787 678899999 69999997652 23444 2222222 222 333333
Q ss_pred CCCCCcccccCCCCCccCCHHHHHHHHHHhcCcc--eecCCCChH----HHHHHHHHHHHhcCCceEEEEEEeCCcccc
Q 012592 183 STHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHL--RLAGPTSFA----PIIEMAITIVEHSGGQYHVLVIIADGQVTR 255 (460)
Q Consensus 183 ~~~~~~vF~~~~~~~~c~G~egvl~~Yr~~l~~v--~LsGPT~Fa----pVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d 255 (460)
|..+|+.+++.+--+--| .|+|-|... |=++.+.++++.. . -+|..|.|..
T Consensus 99 ----------------ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~--~----pvIaEGri~t 155 (192)
T PF04131_consen 99 ----------------ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQAD--V----PVIAEGRIHT 155 (192)
T ss_dssp -----------------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTT--S----EEEEESS--S
T ss_pred ----------------cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCC--C----cEeecCCCCC
Confidence 567888888877665544 377766554 7777777777652 1 2889999985
No 151
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=44.39 E-value=13 Score=38.77 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=26.5
Q ss_pred CCCcccccccCC--------------Cc-----cee-CCCCccchhhhhcC-------------CCCCcccccccc
Q 012592 413 DNHVCPICLTDP--------------KD-----MAF-GCGHQTCCGCGQDL-------------DLCPICRSFIQT 455 (460)
Q Consensus 413 e~~~CpICl~~~--------------kd-----vv~-~CGH~fC~~Ci~~l-------------~~CPiCR~~I~~ 455 (460)
.+.+||+|+..- .| -+| ||||++-..-..-| ..||.|-+.+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 357899998631 11 245 89997544433322 169999877643
No 152
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=43.01 E-value=17 Score=34.30 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCCCcccccccCCCcceeCCCCc-----cchhhhhcC------CCCCccccccc
Q 012592 412 SDNHVCPICLTDPKDMAFGCGHQ-----TCCGCGQDL------DLCPICRSFIQ 454 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv~~CGH~-----fC~~Ci~~l------~~CPiCR~~I~ 454 (460)
..+..|-||.+...+...||... .-.+|+++| ..|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 35579999998765544476543 244899876 37999998764
No 153
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.94 E-value=11 Score=43.76 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCCCcccccccCCCc---ceeCCCCccchhhhh
Q 012592 412 SDNHVCPICLTDPKD---MAFGCGHQTCCGCGQ 441 (460)
Q Consensus 412 ~e~~~CpICl~~~kd---vv~~CGH~fC~~Ci~ 441 (460)
+-+.+|-+|....-. ++|+|||.|-.+|+.
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLI 847 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHH
Confidence 445789999876544 778999999999985
No 154
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.11 E-value=10 Score=39.12 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=18.1
Q ss_pred CCCccchhhhhcC-----------------CCCCcccccccc
Q 012592 431 CGHQTCCGCGQDL-----------------DLCPICRSFIQT 455 (460)
Q Consensus 431 CGH~fC~~Ci~~l-----------------~~CPiCR~~I~~ 455 (460)
|.-..|.+|+.++ ..||+||+.+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 5566777888544 279999998753
No 155
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=2.8e+02 Score=29.86 Aligned_cols=140 Identities=18% Similarity=0.290 Sum_probs=85.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 199 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~c 199 (460)
++.+|+|.++|+.. +-|-. -.|--+.|--. -|-..-.....-|..|-+..+.. +|.-|
T Consensus 429 r~~laldvs~sm~~--------rv~~s---~ln~reaaa~m---~linlhnead~~~vaf~d~lte~----pftkd---- 486 (598)
T KOG4465|consen 429 RFCLALDVSASMNQ--------RVLGS---ILNAREAAAAM---CLINLHNEADSRCVAFCDELTEC----PFTKD---- 486 (598)
T ss_pred eEEEEEecchhhhh--------hhhcc---ccchHHHHhhh---heeeeccccceeEEEeccccccC----CCccc----
Confidence 69999999999842 12211 23544444322 22233334456677887765432 22111
Q ss_pred CCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhc
Q 012592 200 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKAS 279 (460)
Q Consensus 200 ~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS 279 (460)
--+..|+++ +.++..+|..+=-|+| .+++++.++-|.+|+||.+.- -|..-| .+.++.-.+|+
T Consensus 487 ~kigqv~~~----~nni~~g~tdcglpm~-----wa~ennlk~dvfii~tdndt~------ageihp--~~aik~yrea~ 549 (598)
T KOG4465|consen 487 MKIGQVLDA----MNNIDAGGTDCGLPMI-----WAQENNLKADVFIIFTDNDTF------AGEIHP--AEAIKEYREAM 549 (598)
T ss_pred ccHHHHHHH----HhcCCCCCCccCCcee-----ehhhcCCCccEEEEEecCccc------ccccCH--HHHHHHHHHhc
Confidence 135677764 3445666665555654 356777889999999995432 233333 67788889999
Q ss_pred CCC-eEEEEEecCCCCCccc
Q 012592 280 EYP-LSIILVGVGDGPWDMM 298 (460)
Q Consensus 280 ~~P-LSIIiVGVGd~~f~~M 298 (460)
..| --+|+.|+-..+|..-
T Consensus 550 ~i~dakliv~amqa~d~sia 569 (598)
T KOG4465|consen 550 DIHDAKLIVCAMQANDFSIA 569 (598)
T ss_pred CCCcceEEEEEeecCCceec
Confidence 999 6678888888787654
No 156
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=37.85 E-value=63 Score=32.05 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhcCCC---eEEEEEecC
Q 012592 225 APIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYP---LSIILVGVG 291 (460)
Q Consensus 225 apVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~P---LSIIiVGVG 291 (460)
.|++..+++.++++++.-|++=+++||.|.- ..+.....|.-|.+.- +.|-.+.=|
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHS-----------h~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHS-----------HIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccc-----------cHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 3788899999999888999999999999985 2444444444455543 445554444
No 157
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=37.06 E-value=1.6e+02 Score=30.35 Aligned_cols=153 Identities=17% Similarity=0.280 Sum_probs=74.6
Q ss_pred ccccccHHHHHHHHHhcCcceeceEEEEecCCCCCC---CCCCCCCCCCcccc-CCCCCHHHHHHHHHhhcccccCCCCc
Q 012592 98 DDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEW---TGARSFQRRSLHHI-GDDQNPYEQAISIIGKTLSSFDEDNL 173 (460)
Q Consensus 98 ~~~y~~ld~v~~al~~~Gle~~nlivaIDFT~SN~~---~g~~s~~~~SLH~i-~~~~N~Yq~AI~~Ig~il~~yD~D~~ 173 (460)
.++..-||.|.+|++.+|++- ++.+|||+.+|--+ .|+--+..++...- +...+ =++-|.-..+++..
T Consensus 77 ~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s-~delid~y~~li~~------ 148 (295)
T PF00113_consen 77 DDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKS-SDELIDYYKDLIKK------ 148 (295)
T ss_dssp SSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEE-HHHHHHHHHHHHHH------
T ss_pred cchhHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccC-HHHHHHHHHHHHHh------
Confidence 344556899999999999995 99999999999754 22211111110000 00001 12333334444433
Q ss_pred cceEeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcc
Q 012592 174 IPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQV 253 (460)
Q Consensus 174 ip~fGFGa~~~~~~~vF~~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i 253 (460)
+|+...-| +|.. ...+++...=.+.-.++++-|-..|.--.+.+.+-+++..-+ . ++|-=.||
T Consensus 149 YPIvsIED---------pf~e-----dD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~n-a--~llK~NQi 211 (295)
T PF00113_consen 149 YPIVSIED---------PFDE-----DDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACN-A--LLLKPNQI 211 (295)
T ss_dssp S-EEEEES---------SS-T-----T-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--S-E--EEE-HHHH
T ss_pred cCeEEEEc---------cccc-----cchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhcc-c--hhhhhhhh
Confidence 34444433 1211 235555544444445788888665543333333333322110 2 34444454
Q ss_pred ccCCCcccCccchhHHHHHHHHHHhcCCCeEEEE
Q 012592 254 TRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIIL 287 (460)
Q Consensus 254 ~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIi 287 (460)
.- .-+|++++..|...-..+|+
T Consensus 212 gT------------vte~lea~~~a~~~g~~~vv 233 (295)
T PF00113_consen 212 GT------------VTETLEAVKLAKSAGWGVVV 233 (295)
T ss_dssp SS------------HHHHHHHHHHHHHTT-EEEE
T ss_pred HH------------HHHHHHHHHHHHHCCceeec
Confidence 42 45789999988887777666
No 158
>PLN00191 enolase
Probab=36.45 E-value=3.1e+02 Score=30.08 Aligned_cols=70 Identities=20% Similarity=0.420 Sum_probs=43.2
Q ss_pred cccccHHHHHHHHHhcCcceeceEEEEecCCCCCCCCCCCCCC--CCccccCCCCCHHHHHHHHHhhcccccC
Q 012592 99 DNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQR--RSLHHIGDDQNPYEQAISIIGKTLSSFD 169 (460)
Q Consensus 99 ~~y~~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~--~SLH~i~~~~N~Yq~AI~~Ig~il~~yD 169 (460)
++-.-||.|.+|+.++|++ -++.+|||+-+|--|..+..|.- ++-..-+...-..+++|+.+-.+++.|+
T Consensus 241 ~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 241 DNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred CHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 4445678899999999999 58999999999854310001210 0000000112356888888888877665
No 159
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=36.38 E-value=3e+02 Score=26.74 Aligned_cols=157 Identities=12% Similarity=0.166 Sum_probs=82.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC--CCCccceEeeCCCCC------CC---Cc
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD--EDNLIPCFGFGDAST------HD---QE 188 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD--~D~~ip~fGFGa~~~------~~---~~ 188 (460)
.+++.||.|..-- . ....+.++++|...|+..+ ++-+|-+..||...+ +. +.
T Consensus 5 ~~vFvID~s~~ai---------------~--~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~ 67 (239)
T cd01468 5 VFVFVIDVSYEAI---------------K--EGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKM 67 (239)
T ss_pred EEEEEEEcchHhc---------------c--ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeE
Confidence 3688899886421 1 3556777777777777665 888888888876532 00 11
Q ss_pred -ccccCCCCC---ccCC----HHH---HHHHHHHhcCcce-----ecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeC
Q 012592 189 -VFSFYPDEK---FCNG----FEE---VLRRYRELVPHLR-----LAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIAD 250 (460)
Q Consensus 189 -vF~~~~~~~---~c~G----~eg---vl~~Yr~~l~~v~-----LsGPT~FapVI~~a~~~~~~s--~~~Y~VLlIiTD 250 (460)
|++ +-+|+ ...+ +.+ .+...-+.++... -....++.+.++.|..+.+.. +| .| ++++.
T Consensus 68 ~v~~-dl~d~f~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gG--kI-~~f~s 143 (239)
T cd01468 68 YVVS-DLKDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGG--RI-IVFQG 143 (239)
T ss_pred EEeC-CCccCcCCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCc--eE-EEEEC
Confidence 111 11121 1112 222 2222222222221 123489999999999999887 55 34 44454
Q ss_pred CccccCCCcccCccc------------------hhHHHHHHHHHHhcCCCeEEEEEecCCC--CCcccccc
Q 012592 251 GQVTRSVDTEHGQLS------------------SQEKKTVEAIVKASEYPLSIILVGVGDG--PWDMMREF 301 (460)
Q Consensus 251 G~i~d~~d~~~~~~~------------------~~~~~Ti~aIv~AS~~PLSIIiVGVGd~--~f~~M~~l 301 (460)
|-.+- +.|.|. +..+--.+.-.++++.-+|+=+...+.. +...|..|
T Consensus 144 g~pt~----GpG~l~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l 210 (239)
T cd01468 144 GLPTV----GPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQL 210 (239)
T ss_pred CCCCC----CCCccccCcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhh
Confidence 54441 233332 2222223344556666677766666553 33444444
No 160
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=35.45 E-value=4.2e+02 Score=25.65 Aligned_cols=154 Identities=18% Similarity=0.290 Sum_probs=79.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC--CCCccceEeeCCCCC-----C----C--
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD--EDNLIPCFGFGDAST-----H----D-- 186 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD--~D~~ip~fGFGa~~~-----~----~-- 186 (460)
.+++.||.|...- ..+..+.++++|-.+|.... ++-+|-+..|+...+ . .
T Consensus 5 ~y~FvID~s~~av-----------------~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~ 67 (243)
T PF04811_consen 5 VYVFVIDVSYEAV-----------------QSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQM 67 (243)
T ss_dssp EEEEEEE-SHHHH-----------------HHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEE
T ss_pred EEEEEEECchhhh-----------------hccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcc
Confidence 4788899885421 13677888888888888888 888899999987542 0 0
Q ss_pred ------CcccccCCCC-----Ccc-CCHHHHHHHHHHhcCcc-eecCCCChHHHHHHHHHHHH--hcCCceEEEEEEeCC
Q 012592 187 ------QEVFSFYPDE-----KFC-NGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVE--HSGGQYHVLVIIADG 251 (460)
Q Consensus 187 ------~~vF~~~~~~-----~~c-~G~egvl~~Yr~~l~~v-~LsGPT~FapVI~~a~~~~~--~s~~~Y~VLlIiTDG 251 (460)
.+.|.-.+++ .+| .-++++|+.-.+..+.. .-....++...|+.|..+.+ ..+| .|+++. .|
T Consensus 68 ~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~-s~ 144 (243)
T PF04811_consen 68 IVVSDLDDPFIPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFT-SG 144 (243)
T ss_dssp EEEHHTTSHHSSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEE-SS
T ss_pred cchHHHhhcccCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEe-cc
Confidence 0111111111 111 23566666655544443 12345899999999999988 5555 555554 33
Q ss_pred ccc--------cCCCcccCc--------cchhHHHHHHHHHHhcCCCeEEEEEecCCC
Q 012592 252 QVT--------RSVDTEHGQ--------LSSQEKKTVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 252 ~i~--------d~~d~~~~~--------~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
..+ ...+..+.. +.++.+--.+.-.+++..-+++=+...+..
T Consensus 145 ~pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~ 202 (243)
T PF04811_consen 145 PPTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSD 202 (243)
T ss_dssp ---SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS
T ss_pred CCCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCC
Confidence 322 111110000 111111223444556778888777777664
No 161
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.40 E-value=1e+02 Score=31.30 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHhcCcc
Q 012592 201 GFEEVLRRYRELVPHL 216 (460)
Q Consensus 201 G~egvl~~Yr~~l~~v 216 (460)
|+.+++..-++..|.+
T Consensus 27 a~~D~~~~~~~r~~~~ 42 (319)
T PF02601_consen 27 AIQDFLRTLKRRNPIV 42 (319)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 4555555544444443
No 162
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=34.10 E-value=10 Score=38.69 Aligned_cols=35 Identities=34% Similarity=0.771 Sum_probs=26.7
Q ss_pred ccccccCCCc-----ceeCCCCccchhhhhcC----CCCCcccc
Q 012592 417 CPICLTDPKD-----MAFGCGHQTCCGCGQDL----DLCPICRS 451 (460)
Q Consensus 417 CpICl~~~kd-----vv~~CGH~fC~~Ci~~l----~~CPiCR~ 451 (460)
||||.+..-. .+++|||..-..|.+.. -.||+|..
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 9999987443 34599998767777644 48999988
No 163
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.84 E-value=1.4e+02 Score=27.04 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHhcCcceeceEEEEecCCCCC-------CC-----CC-----CCCCCCCccccCCCCCHHHHHHHHHhhc
Q 012592 102 HSLEQVTDALARAGLESSNLIVGIDFTKSNE-------WT-----GA-----RSFQRRSLHHIGDDQNPYEQAISIIGKT 164 (460)
Q Consensus 102 ~~ld~v~~al~~~Gle~~nlivaIDFT~SN~-------~~-----g~-----~s~~~~SLH~i~~~~N~Yq~AI~~Ig~i 164 (460)
..|.++++|+++.|++ +++=+||+.-+. |. |+ ....+ ..|..-....-++.++..|-++
T Consensus 44 Dllge~v~a~h~~Gir---v~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~-~~~~~c~ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 44 DLLGEQVEACHERGIR---VPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYP-GWYTCCLNSPYREFLLEQIREI 119 (132)
T ss_pred CHHHHHHHHHHHCCCE---EEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCC-CceecCCCccHHHHHHHHHHHH
Confidence 5788999999999988 788888883322 32 22 11111 1333332222336778888889
Q ss_pred ccccCCCCcc
Q 012592 165 LSSFDEDNLI 174 (460)
Q Consensus 165 l~~yD~D~~i 174 (460)
++.|+-|+.|
T Consensus 120 ~~~y~~DGiF 129 (132)
T PF14871_consen 120 LDRYDVDGIF 129 (132)
T ss_pred HHcCCCCEEE
Confidence 9999999765
No 164
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=33.47 E-value=11 Score=40.20 Aligned_cols=39 Identities=31% Similarity=0.671 Sum_probs=30.2
Q ss_pred CCCcccccccC--CCc---ceeCCCCccchhhhhcC------CCCCcccc
Q 012592 413 DNHVCPICLTD--PKD---MAFGCGHQTCCGCGQDL------DLCPICRS 451 (460)
Q Consensus 413 e~~~CpICl~~--~kd---vv~~CGH~fC~~Ci~~l------~~CPiCR~ 451 (460)
.++-|-.|-+. .++ -++||.|.|--.|+... ..||.||.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45789999775 344 45799999999999733 58999994
No 165
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=33.13 E-value=4.6e+02 Score=28.05 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHhcCcce-eceEEEEecCCCCCCCCCCCCCCCCccc--cCCCCCHHHHHHHHHhhcccccC
Q 012592 99 DNYHSLEQVTDALARAGLES-SNLIVGIDFTKSNEWTGARSFQRRSLHH--IGDDQNPYEQAISIIGKTLSSFD 169 (460)
Q Consensus 99 ~~y~~ld~v~~al~~~Gle~-~nlivaIDFT~SN~~~g~~s~~~~SLH~--i~~~~N~Yq~AI~~Ig~il~~yD 169 (460)
++-.-|+.|.+|++++|++- -++.++||+-+|--|.. ..-++ ..+..-.-++||+.+.++++.|+
T Consensus 211 ~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~------~~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 211 SNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDE------GKYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhccc------CcceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 34445677999999999982 27999999988743311 11111 11222344888888888888776
No 166
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=31.51 E-value=1.7e+02 Score=31.52 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=49.5
Q ss_pred CHHHHHHHHHH----hcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHH
Q 012592 201 GFEEVLRRYRE----LVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 276 (460)
Q Consensus 201 G~egvl~~Yr~----~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv 276 (460)
++.+.+..++. .+-.|++.. -++.-+++++.+..++.|-.- +.+|++||..+ +.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld--------------e~~i~~l- 310 (405)
T COG1488 248 AFLNAIKVAKALGDKRLDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD--------------EKIIALL- 310 (405)
T ss_pred HHHHhHHHHHhcccccceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch--------------HHHHHHH-
Confidence 44445555553 455666644 678888888888888876444 88999999864 3444444
Q ss_pred HhcCCCeEEEEEecCC
Q 012592 277 KASEYPLSIILVGVGD 292 (460)
Q Consensus 277 ~AS~~PLSIIiVGVGd 292 (460)
++...+ +..-|||.
T Consensus 311 ~~~g~~--~d~FGvGT 324 (405)
T COG1488 311 RAFGAR--NDAFGVGT 324 (405)
T ss_pred HHhCCC--ccEeccch
Confidence 446666 88888885
No 167
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=31.17 E-value=49 Score=33.16 Aligned_cols=69 Identities=30% Similarity=0.483 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCcceecCCCChHHHHH-----------HHHHHH---HhcCCceEEEEEEeCCccccCCCcccCccchhH
Q 012592 203 EEVLRRYRELVPHLRLAGPTSFAPIIE-----------MAITIV---EHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 268 (460)
Q Consensus 203 egvl~~Yr~~l~~v~LsGPT~FapVI~-----------~a~~~~---~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 268 (460)
++-|+.|++.-.+++-..-..+.|-|+ -+..++ +-.+..|+|.+|+-||+.. |
T Consensus 89 ~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~-------------E 155 (243)
T COG3959 89 EEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD-------------E 155 (243)
T ss_pred HHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc-------------c
Confidence 455667777655444333333444433 233332 3346789999999999986 6
Q ss_pred HHHHHHHHHhcCCCeE
Q 012592 269 KKTVEAIVKASEYPLS 284 (460)
Q Consensus 269 ~~Ti~aIv~AS~~PLS 284 (460)
-++-+|+..|+++-|.
T Consensus 156 G~~WEAam~Aah~~L~ 171 (243)
T COG3959 156 GQVWEAAMTAAHYKLD 171 (243)
T ss_pred ccHHHHHHHHHHhccC
Confidence 7889999999998876
No 168
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.14 E-value=31 Score=36.13 Aligned_cols=146 Identities=16% Similarity=0.263 Sum_probs=78.7
Q ss_pred hcCcceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCccccc
Q 012592 113 RAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF 192 (460)
Q Consensus 113 ~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~ 192 (460)
+-|+= -.|+|.||+|.+++.. -+| +|-.-.+|.-+-..+..|=+.|-|--.||=.....-.+...-
T Consensus 56 r~Gii-Rhl~iviD~S~am~e~--------Df~-----P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ 121 (378)
T KOG2807|consen 56 RKGII-RHLYIVIDCSRAMEEK--------DFR-----PSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD 121 (378)
T ss_pred hhhhh-eeEEEEEEhhhhhhhc--------cCC-----chHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH
Confidence 34555 3899999999998632 233 677777777777766666667777777763211111111110
Q ss_pred CCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCc--eEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 193 YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQ--YHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 193 ~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~--Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
...| .+--+++.+... .-+|--+.--.++.|++..+.-.++ =-||+|+.-=...|-- |.-+
T Consensus 122 ltgn-----p~~hI~aL~~~~---~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPg---------di~~ 184 (378)
T KOG2807|consen 122 LTGN-----PRIHIHALKGLT---ECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPG---------DIYE 184 (378)
T ss_pred hcCC-----HHHHHHHHhccc---ccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcc---------cHHH
Confidence 0011 122233322221 2344444444455555555544332 3588888655444422 4789
Q ss_pred HHHHHHHhcCCCeEEEEEecCC
Q 012592 271 TVEAIVKASEYPLSIILVGVGD 292 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd 292 (460)
||+.++.+ + |=+-+||+-.
T Consensus 185 tI~~lk~~-k--IRvsvIgLsa 203 (378)
T KOG2807|consen 185 TIDKLKAY-K--IRVSVIGLSA 203 (378)
T ss_pred HHHHHHhh-C--eEEEEEeech
Confidence 99999854 3 4445566654
No 169
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.06 E-value=18 Score=33.10 Aligned_cols=23 Identities=35% Similarity=0.950 Sum_probs=16.7
Q ss_pred ccchhhhhc-CCCCCccccccccc
Q 012592 434 QTCCGCGQD-LDLCPICRSFIQTR 456 (460)
Q Consensus 434 ~fC~~Ci~~-l~~CPiCR~~I~~~ 456 (460)
.||..|... +..||+|..+|...
T Consensus 29 afcskcgeati~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHhcCCccCCccccc
Confidence 477778764 46899998887653
No 170
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.70 E-value=21 Score=35.62 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=30.2
Q ss_pred CcccccccCCCc---ceeCCCCccchhhhhcC------------CCCCcccccccc
Q 012592 415 HVCPICLTDPKD---MAFGCGHQTCCGCGQDL------------DLCPICRSFIQT 455 (460)
Q Consensus 415 ~~CpICl~~~kd---vv~~CGH~fC~~Ci~~l------------~~CPiCR~~I~~ 455 (460)
.-|..|-..... +.+-|-|.|-.+|+... -.||.|.++|-.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 457777665433 56799999999999643 279999987743
No 171
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.15 E-value=30 Score=35.15 Aligned_cols=44 Identities=18% Similarity=0.461 Sum_probs=32.7
Q ss_pred CCCCcccccccCCCc----cee-CCCCccchhhhhcC--CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDL--DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd----vv~-~CGH~fC~~Ci~~l--~~CPiCR~~I~~ 455 (460)
.....|||---.+.. .++ +|||.|-..-+..+ ..|+.|.+..+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 345789987655444 344 99999988888766 489999988754
No 172
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=29.95 E-value=23 Score=36.28 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=19.0
Q ss_pred CCCCccchhhhhcC--------CCCCccccccc
Q 012592 430 GCGHQTCCGCGQDL--------DLCPICRSFIQ 454 (460)
Q Consensus 430 ~CGH~fC~~Ci~~l--------~~CPiCR~~I~ 454 (460)
.=.|.||..|+.++ ..||.|+..+-
T Consensus 108 ~~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~f 140 (279)
T COG2816 108 YRSHRFCGRCGTKTYPREGGWARVCPKCGHEHF 140 (279)
T ss_pred HhhCcCCCCCCCcCccccCceeeeCCCCCCccC
Confidence 45788999998765 27999987653
No 173
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=29.85 E-value=13 Score=25.33 Aligned_cols=20 Identities=35% Similarity=0.919 Sum_probs=12.0
Q ss_pred CCccchhhhhcC--------CCCCcccc
Q 012592 432 GHQTCCGCGQDL--------DLCPICRS 451 (460)
Q Consensus 432 GH~fC~~Ci~~l--------~~CPiCR~ 451 (460)
.|.||..|.... ..||.|..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 378999998644 37999875
No 174
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.23 E-value=13 Score=37.54 Aligned_cols=43 Identities=28% Similarity=0.685 Sum_probs=20.2
Q ss_pred CCCcccccccCCCccee-CC---C--CccchhhhhcCC----CCCcccccccc
Q 012592 413 DNHVCPICLTDPKDMAF-GC---G--HQTCCGCGQDLD----LCPICRSFIQT 455 (460)
Q Consensus 413 e~~~CpICl~~~kdvv~-~C---G--H~fC~~Ci~~l~----~CPiCR~~I~~ 455 (460)
....||||=..+.-.++ .= | |.+|.-|...|. .||.|-..-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~ 223 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHE 223 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCc
Confidence 34799999998777433 22 4 557889998773 79999765443
No 175
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=29.18 E-value=22 Score=37.10 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=29.9
Q ss_pred CCCcccccccCCCc----ceeCCCCccchhhhhcC-------CCCCccccc
Q 012592 413 DNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL-------DLCPICRSF 452 (460)
Q Consensus 413 e~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l-------~~CPiCR~~ 452 (460)
.-..|||=-+...+ +.+.|||..-.+-+..+ ..||.|-..
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 34789987766544 67799999988887765 379999654
No 176
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.14 E-value=2.8e+02 Score=27.73 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=27.9
Q ss_pred hhcccccccccccHHHHHHHHHhcCcceeceEEEEecCCCCCCCCCCCCC
Q 012592 91 ERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQ 140 (460)
Q Consensus 91 ~~~~~~i~~~y~~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~ 140 (460)
-+.|..--.+--++|||+..+ +|+++ -||.||| .++|+
T Consensus 92 cqShrlt~edpvtveyitRyi--A~~kQ-------rYTqs~g---rRPFG 129 (249)
T KOG0183|consen 92 CQSHRLTLEDPVTVEYITRYI--AGLKQ-------RYTQSNG---RRPFG 129 (249)
T ss_pred hhhhhcccCCCcHHHHHHHHH--HHhhh-------hhhccCC---ccccc
Confidence 455666666777899998888 56775 4888995 56776
No 177
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=27.92 E-value=3.4e+02 Score=28.23 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=62.0
Q ss_pred ccceEeeCCCCC----------CC---CcccccCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC
Q 012592 173 LIPCFGFGDAST----------HD---QEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG 239 (460)
Q Consensus 173 ~ip~fGFGa~~~----------~~---~~vF~~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~ 239 (460)
.+=+||||-|.. .+ ..|+-+|+-.|.+ .+.+|+..--+.+-...-..+..-...++.+.+..+...
T Consensus 56 nlL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~-~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~ 134 (326)
T PF04084_consen 56 NLLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNGYFPSL-SIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESRP 134 (326)
T ss_pred eEEEEecChHHHHHHHHHHHHhhccCCCcEEEEEccCCCC-cHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhccC
Confidence 388999998742 12 4555555544444 567777665554433322344566666666666666553
Q ss_pred -CceEEEEEE-eCCccccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 012592 240 -GQYHVLVII-ADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 294 (460)
Q Consensus 240 -~~Y~VLlIi-TDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 294 (460)
....+|||= -||..-+ ..++..+|..-+..|-=.+|.=|=.-+
T Consensus 135 ~~~~l~lvIHnIDg~~LR------------~~~~Q~~La~LA~~p~I~lIASiDhin 179 (326)
T PF04084_consen 135 SPPPLYLVIHNIDGPSLR------------NEKAQSLLAQLASIPNIHLIASIDHIN 179 (326)
T ss_pred CCCceEEEEECCCChhhc------------ChHHHHHHHHHHcCCCeEEEEeccCCC
Confidence 233333333 7888755 245556666666777766665554444
No 178
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.78 E-value=25 Score=39.92 Aligned_cols=23 Identities=39% Similarity=0.943 Sum_probs=19.1
Q ss_pred ceeCCCCccchhhhhcC--CCCCccc
Q 012592 427 MAFGCGHQTCCGCGQDL--DLCPICR 450 (460)
Q Consensus 427 vv~~CGH~fC~~Ci~~l--~~CPiCR 450 (460)
+.+.|||..|..|++.+ ..|| |.
T Consensus 29 vsl~cghtic~~c~~~lyn~scp-~~ 53 (861)
T KOG3161|consen 29 VSLQCGHTICGHCVQLLYNASCP-TK 53 (861)
T ss_pred ccccccchHHHHHHHhHhhccCC-CC
Confidence 56689999999999987 4788 54
No 179
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=24 Score=32.66 Aligned_cols=38 Identities=39% Similarity=0.991 Sum_probs=24.1
Q ss_pred CCCCcccccccC-CCcceeCCCCc-------cchhhhhcC--------CCCCccccc
Q 012592 412 SDNHVCPICLTD-PKDMAFGCGHQ-------TCCGCGQDL--------DLCPICRSF 452 (460)
Q Consensus 412 ~e~~~CpICl~~-~kdvv~~CGH~-------fC~~Ci~~l--------~~CPiCR~~ 452 (460)
.++.+|-||+.. |.| .|||. ||..|+-+. +.|-.||..
T Consensus 63 ~ddatC~IC~KTKFAD---G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD---GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhccccc---ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 467799999842 222 67776 344666433 368888864
No 180
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=27.44 E-value=38 Score=28.43 Aligned_cols=41 Identities=27% Similarity=0.785 Sum_probs=17.1
Q ss_pred CCcccccccCC---Cc-cee----CCCCccchhhhh-----cCCCCCccccccc
Q 012592 414 NHVCPICLTDP---KD-MAF----GCGHQTCCGCGQ-----DLDLCPICRSFIQ 454 (460)
Q Consensus 414 ~~~CpICl~~~---kd-vv~----~CGH~fC~~Ci~-----~l~~CPiCR~~I~ 454 (460)
...|.||-+.. .+ -+| .|+--.|+.|.+ ....||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 35899998752 22 122 788888999985 4468999997765
No 181
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=27.24 E-value=53 Score=34.16 Aligned_cols=39 Identities=23% Similarity=0.651 Sum_probs=27.4
Q ss_pred CCCcccccccCCCc-ce-e--CCC--CccchhhhhcCC----CCCcccc
Q 012592 413 DNHVCPICLTDPKD-MA-F--GCG--HQTCCGCGQDLD----LCPICRS 451 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv-~--~CG--H~fC~~Ci~~l~----~CPiCR~ 451 (460)
....||||=..+.- ++ + .=| |..|.-|...|. .||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45799999998765 32 2 234 346778888774 7999975
No 182
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=26.83 E-value=3.9e+02 Score=28.34 Aligned_cols=37 Identities=24% Similarity=0.657 Sum_probs=27.4
Q ss_pred CcccccccCCCc-cee---CCCCccchhhhh----cCCCCCcccc
Q 012592 415 HVCPICLTDPKD-MAF---GCGHQTCCGCGQ----DLDLCPICRS 451 (460)
Q Consensus 415 ~~CpICl~~~kd-vv~---~CGH~fC~~Ci~----~l~~CPiCR~ 451 (460)
..|-.|.+..+. ..+ .|.+.||-+|-. .+..||-|..
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 349999666555 333 788999999974 5568999963
No 183
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.77 E-value=2.9e+02 Score=28.02 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCC
Q 012592 269 KKTVEAIVKASEYPLSIILVGVGD 292 (460)
Q Consensus 269 ~~Ti~aIv~AS~~PLSIIiVGVGd 292 (460)
++...||. +|..| ||.|||.
T Consensus 97 e~varai~-~~~~P---visaIGH 116 (319)
T PF02601_consen 97 EEVARAIA-ASPIP---VISAIGH 116 (319)
T ss_pred HHHHHHHH-hCCCC---EEEecCC
Confidence 44444444 33444 5555554
No 184
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.43 E-value=20 Score=33.72 Aligned_cols=25 Identities=28% Similarity=0.715 Sum_probs=20.2
Q ss_pred CCccchhhhhcC-CCCCccccccccc
Q 012592 432 GHQTCCGCGQDL-DLCPICRSFIQTR 456 (460)
Q Consensus 432 GH~fC~~Ci~~l-~~CPiCR~~I~~~ 456 (460)
.+.||..|+.+. ..||.|..+|...
T Consensus 27 ~~~fC~kCG~~tI~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTITSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHHHHCcCCCCCCCCc
Confidence 356999999765 6899999998764
No 185
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.41 E-value=39 Score=35.01 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=28.0
Q ss_pred CCCcccccccCCCc-ceeC----CC--CccchhhhhcCC----CCCccccc
Q 012592 413 DNHVCPICLTDPKD-MAFG----CG--HQTCCGCGQDLD----LCPICRSF 452 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~~----CG--H~fC~~Ci~~l~----~CPiCR~~ 452 (460)
....||||-..+.- ++.. =| |..|.-|...|. .||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 34699999998865 3322 34 447888988774 79999763
No 186
>PLN02189 cellulose synthase
Probab=24.50 E-value=50 Score=39.53 Aligned_cols=40 Identities=33% Similarity=0.765 Sum_probs=29.3
Q ss_pred CcccccccCCC---c----cee-CCCCccchhhhhc-----CCCCCccccccc
Q 012592 415 HVCPICLTDPK---D----MAF-GCGHQTCCGCGQD-----LDLCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~~k---d----vv~-~CGH~fC~~Ci~~-----l~~CPiCR~~I~ 454 (460)
..|.||-+... + ++- .|+--.|+.|.+- -..||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 59999998632 2 222 5888899999963 358999998765
No 187
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.46 E-value=21 Score=31.44 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=25.4
Q ss_pred CcccccccCCC---c---ceeCCCCccchhhhhcC-----CCCCccccc
Q 012592 415 HVCPICLTDPK---D---MAFGCGHQTCCGCGQDL-----DLCPICRSF 452 (460)
Q Consensus 415 ~~CpICl~~~k---d---vv~~CGH~fC~~Ci~~l-----~~CPiCR~~ 452 (460)
..|.+|...+. + +-..|+|.+|..|.... +.|-+|+..
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred cchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 48999987542 2 22389999999998643 378888753
No 188
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=24.16 E-value=59 Score=34.06 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCCcccccccCCCccee-CCCCc-cchhhhhc-----CCCCCccccccccc
Q 012592 412 SDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQD-----LDLCPICRSFIQTR 456 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv~-~CGH~-fC~~Ci~~-----l~~CPiCR~~I~~~ 456 (460)
.....|.+|+++..-++. +|+|. ||-.|..+ ...|++|...+.+.
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra 185 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRA 185 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhh
Confidence 344689999988776554 99998 88777543 35799997765543
No 189
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=30 Score=33.46 Aligned_cols=46 Identities=26% Similarity=0.524 Sum_probs=32.1
Q ss_pred CCCCcccccccCCCcc-----e---eCCCCccchhhhhcC---------------CCCCcccccccccc
Q 012592 412 SDNHVCPICLTDPKDM-----A---FGCGHQTCCGCGQDL---------------DLCPICRSFIQTRI 457 (460)
Q Consensus 412 ~e~~~CpICl~~~kdv-----v---~~CGH~fC~~Ci~~l---------------~~CPiCR~~I~~~i 457 (460)
++...|-||+.+.-+- + ..||..|-.-|+-+| -.||.|..+|.-++
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 3456899998875541 1 378877777787554 17999999987543
No 190
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=23.99 E-value=29 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.640 Sum_probs=15.6
Q ss_pred CCCcccccccCCCcce---e--CCCCccchhhhh
Q 012592 413 DNHVCPICLTDPKDMA---F--GCGHQTCCGCGQ 441 (460)
Q Consensus 413 e~~~CpICl~~~kdvv---~--~CGH~fC~~Ci~ 441 (460)
+...|.+|...|.-.. - .||+.||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 4568999998884421 1 899999999985
No 191
>PLN02436 cellulose synthase A
Probab=23.85 E-value=52 Score=39.51 Aligned_cols=40 Identities=28% Similarity=0.707 Sum_probs=29.5
Q ss_pred CcccccccC---CCc----cee-CCCCccchhhhhc-----CCCCCccccccc
Q 012592 415 HVCPICLTD---PKD----MAF-GCGHQTCCGCGQD-----LDLCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~---~kd----vv~-~CGH~fC~~Ci~~-----l~~CPiCR~~I~ 454 (460)
..|.||-+. ..+ |+- .|+--.|+.|.+- -..||.|++...
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 599999886 333 222 6888899999963 258999998765
No 192
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=22.89 E-value=38 Score=29.99 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.6
Q ss_pred CCCCccchhhhhcC----CCCCccccc
Q 012592 430 GCGHQTCCGCGQDL----DLCPICRSF 452 (460)
Q Consensus 430 ~CGH~fC~~Ci~~l----~~CPiCR~~ 452 (460)
-|.|.|-..|+.++ ..||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 79999999999877 379999764
No 193
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.72 E-value=2e+02 Score=30.79 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCccccccCC
Q 012592 268 EKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 268 ~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
..+.++||..+.....=+||||=|+|..+.|--||+
T Consensus 178 ~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 178 AASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 467777777777655677888888888888877776
No 194
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=48 Score=33.59 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=26.4
Q ss_pred CCCCCCcccccccCCCc-ceeCCCCccchhhhh
Q 012592 410 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQ 441 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~ 441 (460)
+..+-..|+.||....+ |+.+=||.||++|+.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaIL 71 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAIL 71 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHH
Confidence 34555789999999999 555899999999985
No 195
>PTZ00081 enolase; Provisional
Probab=22.51 E-value=9.6e+02 Score=26.13 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=42.3
Q ss_pred ccccHHHHHHHHHhcCcceeceEEEEecCCCCCCCC-CCCCCCCCccccC---C--CCCHHHHHHHHHhhcccccC
Q 012592 100 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTG-ARSFQRRSLHHIG---D--DQNPYEQAISIIGKTLSSFD 169 (460)
Q Consensus 100 ~y~~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g-~~s~~~~SLH~i~---~--~~N~Yq~AI~~Ig~il~~yD 169 (460)
.-.-|+.|.+|.+++|++ -++.+|||+-+|.-|.. +..| .+.+.. . ..-.-++.|+-+.+.++.|+
T Consensus 227 ~eeal~ll~eAi~~ag~~-~~v~i~lD~Aase~~~~~~~~Y---~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~ 298 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYE-GKVKICMDVAASEFYDKEKKVY---DLDFKNPNNDKSNKLTGEELVELYLDLVKKYP 298 (439)
T ss_pred HHHHHHHHHHHHHHcCCc-CceEEEEehhhhhhhhccCCce---eeeeccccCccccccCHHHHHHHHHHHHhcCC
Confidence 334577888999999999 58999999998864310 0011 111111 1 12456777777778888875
No 196
>PLN02400 cellulose synthase
Probab=22.48 E-value=59 Score=39.10 Aligned_cols=40 Identities=28% Similarity=0.754 Sum_probs=29.3
Q ss_pred CcccccccCC---Cc----cee-CCCCccchhhhh-----cCCCCCccccccc
Q 012592 415 HVCPICLTDP---KD----MAF-GCGHQTCCGCGQ-----DLDLCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~~---kd----vv~-~CGH~fC~~Ci~-----~l~~CPiCR~~I~ 454 (460)
..|.||-+.. .+ |+- .|+--+|+.|.+ ....||.|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 5999998862 23 222 788889999996 2358999998765
No 197
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=22.05 E-value=3.3e+02 Score=27.31 Aligned_cols=90 Identities=18% Similarity=0.371 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHHhcCc-ceecCCCChHHHHHHH-----HHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHH
Q 012592 199 CNGFEEVLRRYRELVPH-LRLAGPTSFAPIIEMA-----ITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 272 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~-v~LsGPT~FapVI~~a-----~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti 272 (460)
+.-+++++++--..-.. |.=.|+.+|.|+.+.. .+..++.+-.-.|+.+||-|+- ..+|+
T Consensus 67 ~r~fD~Lve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg~~--------------~~dtl 132 (241)
T PRK13886 67 TRNFDALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQA--------------LLDTV 132 (241)
T ss_pred hhhHHHHHHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCCcc--------------cHHHH
Confidence 44677887776532222 3346899999998864 4556666666677777887762 34566
Q ss_pred HHHHH-hcCCC--eEEEE-E--------ecCCCCCccccccCC
Q 012592 273 EAIVK-ASEYP--LSIIL-V--------GVGDGPWDMMREFDD 303 (460)
Q Consensus 273 ~aIv~-AS~~P--LSIIi-V--------GVGd~~f~~M~~lDd 303 (460)
+.+.+ ++.+| .-+|+ . +-| .+|+.|+..+.
T Consensus 133 ~~~~~l~~~~~~~~~~Vvw~N~~~G~~~~~g-k~fe~~~~y~~ 174 (241)
T PRK13886 133 SGFAQLASQFPAECLFVVWLNPYWGPIEHEG-KGFEQMKAYTA 174 (241)
T ss_pred HHHHHHHHHcCCCceEEEEecCccCcccccC-CCHHHhHhhHH
Confidence 66643 34455 23333 1 233 47888877765
No 198
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.59 E-value=50 Score=21.91 Aligned_cols=20 Identities=30% Similarity=0.770 Sum_probs=9.6
Q ss_pred cccccccCCCc-cee--CCCCcc
Q 012592 416 VCPICLTDPKD-MAF--GCGHQT 435 (460)
Q Consensus 416 ~CpICl~~~kd-vv~--~CGH~f 435 (460)
.||-|...... ..+ .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 46666554433 222 356554
No 199
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.56 E-value=82 Score=28.15 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=25.5
Q ss_pred CcccccccCCCcc------------ee---CCCCccchhhhh----cCCCCCccc
Q 012592 415 HVCPICLTDPKDM------------AF---GCGHQTCCGCGQ----DLDLCPICR 450 (460)
Q Consensus 415 ~~CpICl~~~kdv------------v~---~CGH~fC~~Ci~----~l~~CPiCR 450 (460)
..|--|+..+... .+ .|.+.||.+|-. .+..||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 3588887755431 22 688999999963 556899995
No 200
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.08 E-value=86 Score=33.00 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=33.3
Q ss_pred ecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCC
Q 012592 218 LAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 292 (460)
Q Consensus 218 LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd 292 (460)
=.|-|.|.||++.. ++..-. -+|+.+|||--+-. ..+-.-|+=||+-|-|.
T Consensus 324 ggG~Tdf~Pvfeyl----ek~~~~-~~lIyfTDG~gd~p-------------------~~~r~~~~lwVl~~~~~ 374 (396)
T COG3864 324 GGGGTDFSPVFEYL----EKNRME-CFLIYFTDGMGDQP-------------------LVFRPKVLLWVLTGAKG 374 (396)
T ss_pred CCCCccccHHHHHH----Hhhccc-ceEEEEccCCCCcc-------------------cccCCcceEEEecCCcc
Confidence 35679999999865 333222 78899999975420 11234468888888663
No 201
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=21.04 E-value=48 Score=36.40 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=9.6
Q ss_pred CCCcccccccCCCc
Q 012592 413 DNHVCPICLTDPKD 426 (460)
Q Consensus 413 e~~~CpICl~~~kd 426 (460)
+..-||-||+....
T Consensus 25 ~~~yCp~CL~~~p~ 38 (483)
T PF05502_consen 25 DSYYCPNCLFEVPS 38 (483)
T ss_pred ceeECccccccCCh
Confidence 34578999877554
No 202
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=20.30 E-value=53 Score=28.24 Aligned_cols=37 Identities=27% Similarity=0.642 Sum_probs=29.0
Q ss_pred CCcccccccCCCcceeCCCCccchhhhhcCCCCCccccccc
Q 012592 414 NHVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQ 454 (460)
Q Consensus 414 ~~~CpICl~~~kdvv~~CGH~fC~~Ci~~l~~CPiCR~~I~ 454 (460)
...|.||-.. +..=||.+|..|+-.--.|.+|-..|.
T Consensus 44 ~~~C~~CK~~----v~q~g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTK----VHQPGAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred Cccccccccc----cccCCCccChhhhcccCcccccCCeec
Confidence 4579999742 223488999999998889999988773
No 203
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=20.29 E-value=30 Score=29.87 Aligned_cols=20 Identities=30% Similarity=0.826 Sum_probs=18.1
Q ss_pred CccchhhhhcCCCCCccccc
Q 012592 433 HQTCCGCGQDLDLCPICRSF 452 (460)
Q Consensus 433 H~fC~~Ci~~l~~CPiCR~~ 452 (460)
|..|..|+..+..|+.|..+
T Consensus 71 h~iC~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 71 HVICDPCAKELKVCAKCGKP 90 (92)
T ss_pred HHHHHHHHHhhccCcccCCC
Confidence 88999999999999999764
No 204
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.11 E-value=1.1e+02 Score=36.93 Aligned_cols=40 Identities=30% Similarity=0.710 Sum_probs=29.3
Q ss_pred CcccccccCC---Cc----cee-CCCCccchhhhh-----cCCCCCccccccc
Q 012592 415 HVCPICLTDP---KD----MAF-GCGHQTCCGCGQ-----DLDLCPICRSFIQ 454 (460)
Q Consensus 415 ~~CpICl~~~---kd----vv~-~CGH~fC~~Ci~-----~l~~CPiCR~~I~ 454 (460)
..|.||-+.. .+ |+- .||--.|+.|.+ .-..||.|++...
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 5999998862 23 222 788889999995 2358999998765
Done!