Query 012592
Match_columns 460
No_of_seqs 377 out of 1561
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.2 2E-11 6.7E-16 96.4 5.6 50 411-460 12-63 (68)
2 2ecg_A Baculoviral IAP repeat- 99.1 5.9E-12 2E-16 100.5 -1.7 49 412-460 23-73 (75)
3 4ic3_A E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 95.2 2.0 50 411-460 21-72 (74)
4 2ysl_A Tripartite motif-contai 99.0 3.4E-10 1.2E-14 88.6 5.3 51 405-455 11-69 (73)
5 2yho_A E3 ubiquitin-protein li 98.9 1.5E-10 5.3E-15 93.8 1.8 49 412-460 16-66 (79)
6 2d8t_A Dactylidin, ring finger 98.9 8.7E-10 3E-14 86.4 4.6 45 411-455 12-61 (71)
7 2vje_B MDM4 protein; proto-onc 98.9 1.2E-10 4E-15 90.4 -0.9 48 413-460 6-61 (63)
8 2ecn_A Ring finger protein 141 98.9 9.1E-10 3.1E-14 85.7 3.8 51 409-459 10-64 (70)
9 2vje_A E3 ubiquitin-protein li 98.9 1.3E-10 4.5E-15 90.4 -1.1 48 413-460 7-62 (64)
10 2djb_A Polycomb group ring fin 98.9 1.2E-09 4.2E-14 85.8 4.2 50 407-456 8-63 (72)
11 2ea6_A Ring finger protein 4; 98.9 7.7E-10 2.6E-14 85.2 3.0 49 408-456 9-69 (69)
12 1e4u_A Transcriptional repress 98.8 1.7E-09 5.7E-14 87.7 3.7 50 409-458 6-65 (78)
13 2egp_A Tripartite motif-contai 98.8 2.6E-09 8.9E-14 84.6 4.3 48 408-455 6-65 (79)
14 2ecw_A Tripartite motif-contai 98.8 4.1E-09 1.4E-13 84.0 5.5 49 407-455 12-71 (85)
15 2csy_A Zinc finger protein 183 98.8 2.8E-09 9.4E-14 85.5 4.4 47 409-455 10-61 (81)
16 2yur_A Retinoblastoma-binding 98.8 2E-09 6.8E-14 85.3 3.3 49 407-455 8-64 (74)
17 2ecv_A Tripartite motif-contai 98.8 6E-09 2.1E-13 83.0 5.9 49 407-455 12-71 (85)
18 2ecy_A TNF receptor-associated 98.8 2.7E-09 9.4E-14 82.3 3.5 48 409-456 10-63 (66)
19 3l11_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 92.5 2.2 49 407-455 8-62 (115)
20 3t6p_A Baculoviral IAP repeat- 98.8 1.7E-09 5.9E-14 110.0 2.4 51 410-460 291-343 (345)
21 2ect_A Ring finger protein 126 98.7 5.1E-09 1.7E-13 83.1 4.1 49 408-456 9-65 (78)
22 3ztg_A E3 ubiquitin-protein li 98.7 4.5E-09 1.6E-13 86.0 3.7 45 409-453 8-60 (92)
23 2ysj_A Tripartite motif-contai 98.7 6.5E-09 2.2E-13 79.3 4.2 45 405-449 11-63 (63)
24 2ct2_A Tripartite motif protei 98.7 6.9E-09 2.3E-13 83.7 4.5 48 408-455 9-68 (88)
25 4ayc_A E3 ubiquitin-protein li 98.7 2.2E-09 7.5E-14 94.9 1.3 44 413-456 52-100 (138)
26 1bor_A Transcription factor PM 98.7 5.8E-09 2E-13 78.7 3.4 44 412-455 4-49 (56)
27 2ep4_A Ring finger protein 24; 98.7 9.7E-09 3.3E-13 80.7 4.0 51 408-458 9-67 (74)
28 1t1h_A Gspef-atpub14, armadill 98.7 7.9E-09 2.7E-13 82.0 3.1 46 410-455 4-55 (78)
29 3ng2_A RNF4, snurf, ring finge 98.7 4.7E-09 1.6E-13 81.5 1.7 45 411-455 7-63 (71)
30 2ecj_A Tripartite motif-contai 98.7 1.5E-08 5.1E-13 75.6 4.0 42 408-449 9-58 (58)
31 1chc_A Equine herpes virus-1 r 98.7 8.7E-09 3E-13 79.5 2.7 47 412-458 3-55 (68)
32 1wgm_A Ubiquitin conjugation f 98.6 2.8E-08 9.4E-13 83.7 5.0 49 407-455 15-69 (98)
33 2xeu_A Ring finger protein 4; 98.6 8.1E-09 2.8E-13 78.3 1.3 48 413-460 2-63 (64)
34 2kiz_A E3 ubiquitin-protein li 98.6 2.7E-08 9.3E-13 77.1 4.0 48 410-457 10-65 (69)
35 1iym_A EL5; ring-H2 finger, ub 98.6 3E-08 1E-12 73.3 3.9 44 411-454 2-54 (55)
36 3fl2_A E3 ubiquitin-protein li 98.6 1.2E-08 4.2E-13 88.2 1.5 44 412-455 50-99 (124)
37 3lrq_A E3 ubiquitin-protein li 98.5 1.1E-08 3.9E-13 85.6 0.8 46 410-455 18-70 (100)
38 2kr4_A Ubiquitin conjugation f 98.5 3.6E-08 1.2E-12 80.6 3.5 47 409-455 9-60 (85)
39 2kre_A Ubiquitin conjugation f 98.5 7.6E-08 2.6E-12 81.3 5.5 47 409-455 24-75 (100)
40 2ckl_A Polycomb group ring fin 98.5 1.9E-08 6.4E-13 85.0 1.3 45 411-455 12-62 (108)
41 1g25_A CDK-activating kinase a 98.5 1.9E-08 6.6E-13 77.3 1.0 43 413-455 2-55 (65)
42 1x4j_A Ring finger protein 38; 98.5 5.8E-08 2E-12 76.6 3.1 45 411-455 20-72 (75)
43 1jm7_B BARD1, BRCA1-associated 98.5 4.4E-08 1.5E-12 84.1 2.5 45 410-454 18-66 (117)
44 2ecm_A Ring finger and CHY zin 98.5 6.9E-08 2.4E-12 71.3 3.0 42 413-454 4-54 (55)
45 2ckl_B Ubiquitin ligase protei 98.5 3.3E-08 1.1E-12 89.5 1.5 47 409-455 49-102 (165)
46 1jm7_A BRCA1, breast cancer ty 98.4 4.3E-08 1.5E-12 82.5 1.7 44 412-455 19-70 (112)
47 4hqf_A Thrombospondin-related 98.4 9E-07 3.1E-11 85.8 11.1 151 118-303 21-179 (281)
48 2l0b_A E3 ubiquitin-protein li 98.4 6.8E-08 2.3E-12 79.5 2.5 46 411-456 37-90 (91)
49 1z6u_A NP95-like ring finger p 98.4 6.2E-08 2.1E-12 87.3 2.3 45 412-456 76-126 (150)
50 2y43_A E3 ubiquitin-protein li 98.4 7E-08 2.4E-12 80.1 2.2 45 411-455 19-69 (99)
51 3hct_A TNF receptor-associated 98.4 7.1E-08 2.4E-12 82.9 2.3 47 409-455 13-65 (118)
52 2c2l_A CHIP, carboxy terminus 98.4 1.3E-07 4.4E-12 90.8 4.2 44 412-455 206-255 (281)
53 3knv_A TNF receptor-associated 98.4 2.8E-08 9.7E-13 88.7 -0.8 44 410-453 27-76 (141)
54 1v87_A Deltex protein 2; ring- 98.4 7.8E-08 2.7E-12 81.6 1.6 43 414-456 25-95 (114)
55 4hqo_A Sporozoite surface prot 98.4 1.3E-06 4.5E-11 84.4 10.0 149 119-302 19-175 (266)
56 2y1n_A E3 ubiquitin-protein li 98.3 1.9E-07 6.5E-12 96.4 3.9 46 413-458 331-382 (389)
57 1rmd_A RAG1; V(D)J recombinati 98.3 4.5E-08 1.5E-12 83.5 -0.8 46 410-455 19-70 (116)
58 2yu4_A E3 SUMO-protein ligase 98.2 4.8E-07 1.7E-11 75.1 2.9 42 411-452 4-59 (94)
59 3n2n_F Anthrax toxin receptor 98.2 1.1E-05 3.7E-10 72.1 11.9 147 119-303 8-158 (185)
60 4ap4_A E3 ubiquitin ligase RNF 98.2 3E-07 1E-11 78.7 1.2 44 412-455 5-60 (133)
61 1shu_X Anthrax toxin receptor 98.2 7.6E-06 2.6E-10 72.9 10.0 147 119-303 7-155 (182)
62 2ecl_A Ring-box protein 2; RNF 98.2 1.4E-06 4.9E-11 70.2 4.4 43 413-455 14-76 (81)
63 2xgg_A Microneme protein 2; A/ 98.2 1.3E-05 4.5E-10 72.2 11.2 137 119-293 18-162 (178)
64 3ibs_A Conserved hypothetical 98.2 6.3E-06 2.2E-10 75.7 9.3 139 119-293 12-150 (218)
65 1q0p_A Complement factor B; VO 98.1 4E-06 1.4E-10 77.0 7.6 157 118-303 15-191 (223)
66 4fx5_A VON willebrand factor t 98.1 5.5E-06 1.9E-10 87.0 9.5 151 118-302 77-230 (464)
67 2f42_A STIP1 homology and U-bo 98.1 8.1E-07 2.8E-11 82.8 2.3 44 412-455 104-153 (179)
68 3hcs_A TNF receptor-associated 98.1 6.8E-07 2.3E-11 81.1 1.5 46 410-455 14-65 (170)
69 4ap4_A E3 ubiquitin ligase RNF 98.0 1E-06 3.4E-11 75.5 0.9 44 412-455 70-125 (133)
70 1atz_A VON willebrand factor; 98.0 1.8E-05 6.2E-10 71.5 9.1 141 119-301 6-155 (189)
71 1n3y_A Integrin alpha-X; alpha 98.0 2.5E-06 8.5E-11 77.3 2.9 143 119-302 10-165 (198)
72 1ijb_A VON willebrand factor; 98.0 1.8E-05 6.2E-10 72.8 8.5 144 119-301 14-166 (202)
73 2odp_A Complement C2; C3/C5 co 97.9 1.3E-05 4.6E-10 83.3 8.0 154 118-303 9-185 (509)
74 2b2x_A Integrin alpha-1; compu 97.9 5.8E-05 2E-09 70.2 11.4 132 119-293 23-164 (223)
75 3htk_C E3 SUMO-protein ligase 97.9 3.5E-06 1.2E-10 82.8 2.9 46 410-455 177-232 (267)
76 1pt6_A Integrin alpha-1; cell 97.9 8.2E-05 2.8E-09 68.6 11.4 132 119-293 8-149 (213)
77 2x31_A Magnesium-chelatase 60 97.8 2.5E-06 8.4E-11 77.0 0.3 152 119-302 6-161 (189)
78 4b4t_W RPN10, 26S proteasome r 97.8 9.2E-05 3.2E-09 72.9 11.5 164 116-318 3-174 (268)
79 1rrk_A Complement factor B; BB 97.8 4.9E-05 1.7E-09 78.6 9.5 153 119-303 2-177 (497)
80 1mf7_A Integrin alpha M; cell 97.8 4.8E-06 1.6E-10 75.5 1.3 142 119-301 6-160 (194)
81 2x5n_A SPRPN10, 26S proteasome 97.7 0.00025 8.7E-09 65.9 12.3 163 120-321 4-173 (192)
82 3hrz_D Complement factor B; se 97.7 0.0001 3.5E-09 80.0 10.7 150 118-303 243-419 (741)
83 1v7p_C Integrin alpha-2; snake 97.7 0.00027 9.3E-09 64.4 11.5 131 119-292 7-147 (200)
84 3dpl_R Ring-box protein 1; ubi 97.7 1.4E-05 4.9E-10 68.1 2.6 42 413-454 36-100 (106)
85 1wim_A KIAA0161 protein; ring 97.6 1E-05 3.5E-10 66.6 0.9 40 413-452 4-61 (94)
86 2d8s_A Cellular modulator of i 97.6 4.4E-05 1.5E-09 62.0 4.0 47 412-458 13-73 (80)
87 4a0k_B E3 ubiquitin-protein li 97.6 1.2E-05 4.1E-10 70.0 0.3 41 414-454 48-111 (117)
88 3zqk_A VON willebrand factor; 97.3 0.00016 5.6E-09 66.2 4.7 138 119-303 22-169 (199)
89 2bay_A PRE-mRNA splicing facto 97.1 0.00014 4.9E-09 55.9 1.9 42 414-455 3-50 (61)
90 1mjn_A Integrin alpha-L; rossm 97.1 0.0014 4.9E-08 58.8 8.1 137 119-301 3-150 (179)
91 1jey_A KU70; double-strand DNA 97.1 0.0041 1.4E-07 67.3 13.0 158 113-296 32-212 (609)
92 3k6s_A Integrin alpha-X; cell 97.0 0.001 3.5E-08 76.7 7.7 142 119-303 131-287 (1095)
93 3vk6_A E3 ubiquitin-protein li 96.8 0.00049 1.7E-08 58.4 2.7 41 416-456 3-50 (101)
94 1jey_B KU80; double-strand DNA 96.5 0.0085 2.9E-07 64.1 10.0 151 113-293 3-170 (565)
95 1yvr_A RO autoantigen, 60-kDa 96.2 0.031 1.1E-06 59.3 12.4 139 119-296 369-507 (538)
96 2ct0_A Non-SMC element 1 homol 96.1 0.0061 2.1E-07 48.8 4.9 45 412-456 13-65 (74)
97 3k1l_B Fancl; UBC, ring, RWD, 95.8 0.0028 9.7E-08 64.6 2.0 45 412-456 306-374 (381)
98 2nvo_A RO sixty-related protei 95.2 0.099 3.4E-06 55.6 11.5 139 119-294 363-501 (535)
99 1vyx_A ORF K3, K3RING; zinc-bi 94.6 0.015 5.1E-07 44.4 2.2 44 412-455 4-59 (60)
100 2ko5_A Ring finger protein Z; 93.5 0.05 1.7E-06 45.6 3.5 52 408-459 22-77 (99)
101 2jun_A Midline-1; B-BOX, TRIM, 90.3 0.11 3.7E-06 42.6 1.9 30 413-442 2-35 (101)
102 2iue_A Pactolus I-domain; memb 90.2 0.94 3.2E-05 42.9 8.5 109 119-256 4-119 (212)
103 2ww8_A RRGA, cell WALL surface 87.5 2.5 8.5E-05 47.9 11.0 123 119-256 225-393 (893)
104 3nw0_A Non-structural maintena 71.7 1.9 6.4E-05 41.4 2.6 42 414-455 180-229 (238)
105 2cs3_A Protein C14ORF4, MY039 70.2 3.1 0.00011 34.0 3.1 29 413-441 14-47 (93)
106 3fcs_B Integrin beta-3; beta p 67.5 5.8 0.0002 43.6 5.7 50 206-255 200-256 (690)
107 3rag_A Uncharacterized protein 63.8 4.2 0.00014 39.2 3.3 42 241-294 9-50 (242)
108 1z60_A TFIIH basal transcripti 59.6 5.5 0.00019 30.4 2.6 35 415-449 16-58 (59)
109 3rag_A Uncharacterized protein 57.4 13 0.00044 35.9 5.4 92 119-237 135-227 (242)
110 1z2q_A LM5-1; membrane protein 49.3 21 0.00071 28.4 4.6 31 412-442 19-54 (84)
111 3i2d_A E3 SUMO-protein ligase 39.7 16 0.00056 37.3 3.1 42 413-454 248-299 (371)
112 3k6s_B Integrin beta-2; cell r 39.3 17 0.00058 40.0 3.4 48 207-255 193-247 (687)
113 2zet_C Melanophilin; complex, 39.2 5.7 0.0002 35.7 -0.3 39 414-452 68-117 (153)
114 1dvp_A HRS, hepatocyte growth 38.7 26 0.0009 32.5 4.2 29 413-441 160-193 (220)
115 3zyq_A Hepatocyte growth facto 36.2 29 0.001 32.5 4.1 42 414-455 164-222 (226)
116 4fo9_A E3 SUMO-protein ligase 35.5 21 0.00073 36.3 3.2 42 413-454 214-265 (360)
117 2jne_A Hypothetical protein YF 35.3 5.4 0.00019 33.6 -1.0 39 413-454 31-72 (101)
118 3t3p_B Integrin beta-3; integr 32.0 26 0.00089 36.9 3.3 49 207-255 201-256 (472)
119 1x4u_A Zinc finger, FYVE domai 31.3 42 0.0014 26.6 3.7 30 412-441 12-46 (84)
120 1vfy_A Phosphatidylinositol-3- 31.0 31 0.0011 26.6 2.8 27 415-441 12-43 (73)
121 1wfl_A Zinc finger protein 216 29.5 81 0.0028 25.1 4.9 24 414-437 25-50 (74)
122 1wfp_A Zinc finger (AN1-like) 29.3 88 0.003 24.9 5.1 27 412-438 23-51 (74)
123 1zbd_B Rabphilin-3A; G protein 29.2 8.2 0.00028 33.9 -1.0 39 414-452 55-107 (134)
124 1weo_A Cellulose synthase, cat 28.3 39 0.0013 28.0 3.0 41 414-454 16-69 (93)
125 1wfk_A Zinc finger, FYVE domai 28.1 37 0.0013 27.4 2.9 29 413-441 8-41 (88)
126 3t7l_A Zinc finger FYVE domain 26.8 37 0.0013 27.4 2.7 30 413-442 19-53 (90)
127 2lri_C Autoimmune regulator; Z 26.8 95 0.0032 23.6 4.9 38 414-452 12-59 (66)
128 3m0m_A L-rhamnose isomerase; b 26.7 79 0.0027 32.8 5.8 112 172-293 52-183 (438)
129 2jmo_A Parkin; IBR, E3 ligase, 25.6 26 0.00089 27.6 1.5 22 430-452 55-76 (80)
130 2a20_A Regulating synaptic mem 24.5 13 0.00043 28.6 -0.5 41 411-451 6-59 (62)
131 1mm2_A MI2-beta; PHD, zinc fin 24.3 67 0.0023 23.9 3.5 40 412-452 7-56 (61)
132 2yw8_A RUN and FYVE domain-con 24.3 46 0.0016 26.2 2.8 30 413-442 18-52 (82)
133 1wil_A KIAA1045 protein; ring 23.9 76 0.0026 26.0 3.9 32 411-442 12-46 (89)
134 1wg2_A Zinc finger (AN1-like) 23.7 75 0.0026 24.6 3.7 26 413-438 14-41 (64)
135 3mpx_A FYVE, rhogef and PH dom 22.7 18 0.00061 36.4 0.0 42 413-454 374-431 (434)
136 2e6r_A Jumonji/ARID domain-con 22.1 59 0.002 26.3 3.0 42 411-452 13-66 (92)
137 2fiy_A Protein FDHE homolog; F 21.8 20 0.00068 35.7 0.1 41 412-452 180-231 (309)
138 2d8v_A Zinc finger FYVE domain 21.7 42 0.0014 26.3 1.9 32 411-442 5-37 (67)
139 1joc_A EEA1, early endosomal a 21.7 44 0.0015 28.6 2.3 28 415-442 70-102 (125)
140 2l43_A N-teminal domain from h 20.5 1E+02 0.0034 24.8 4.1 44 411-454 22-77 (88)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=96.44 Aligned_cols=50 Identities=28% Similarity=0.772 Sum_probs=45.5
Q ss_pred CCCCCcccccccCCCccee-CCCCc-cchhhhhcCCCCCccccccccccccC
Q 012592 411 TSDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 411 l~e~~~CpICl~~~kdvv~-~CGH~-fC~~Ci~~l~~CPiCR~~I~~~irly 460 (460)
..+...|+||++.++++++ +|||. ||..|+..+..||+||++|..++++|
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEee
Confidence 4456899999999999665 99999 99999999999999999999999987
No 2
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-12 Score=100.46 Aligned_cols=49 Identities=31% Similarity=0.884 Sum_probs=44.5
Q ss_pred CCCCcccccccCCCcce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 012592 412 SDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv-~~CGH~-fC~~Ci~~l~~CPiCR~~I~~~irly 460 (460)
+++..|+||++.+++++ ++|||. ||..|+.++..||+||.+|..++++|
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 44578999999999955 599999 99999999999999999999999987
No 3
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=4.7e-11 Score=95.20 Aligned_cols=50 Identities=30% Similarity=0.808 Sum_probs=44.9
Q ss_pred CCCCCcccccccCCCcc-eeCCCCc-cchhhhhcCCCCCccccccccccccC
Q 012592 411 TSDNHVCPICLTDPKDM-AFGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 411 l~e~~~CpICl~~~kdv-v~~CGH~-fC~~Ci~~l~~CPiCR~~I~~~irly 460 (460)
++++..|+||++.+.+. .++|||. ||..|+..+..||+||++|..++++|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 34568999999999995 4599999 99999999999999999999999887
No 4
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.4e-10 Score=88.57 Aligned_cols=51 Identities=25% Similarity=0.776 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCcccccccCCCc-ceeCCCCccchhhhhcCC-------CCCcccccccc
Q 012592 405 APPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD-------LCPICRSFIQT 455 (460)
Q Consensus 405 s~~~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l~-------~CPiCR~~I~~ 455 (460)
......+.++..|+||++.+.+ ++++|||.||..|+..+. .||+||.++..
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3344566788999999999999 566999999999998664 69999999864
No 5
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.95 E-value=1.5e-10 Score=93.76 Aligned_cols=49 Identities=29% Similarity=0.819 Sum_probs=44.0
Q ss_pred CCCCcccccccCCCcce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 012592 412 SDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv-~~CGH~-fC~~Ci~~l~~CPiCR~~I~~~irly 460 (460)
+++..|+||++.+++++ ++|||. ||..|+..+..||+||.+|..++++|
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 34578999999999955 599999 99999999999999999999998876
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=8.7e-10 Score=86.45 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=38.9
Q ss_pred CCCCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
..++..|+||++.+++ +.++|||.||..|+..| ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4566799999999999 66799999999999887 379999999864
No 7
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.89 E-value=1.2e-10 Score=90.41 Aligned_cols=48 Identities=38% Similarity=0.805 Sum_probs=42.2
Q ss_pred CCCcccccccCCCc-cee--CCCCc-cchhhhhcCC----CCCccccccccccccC
Q 012592 413 DNHVCPICLTDPKD-MAF--GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 460 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~--~CGH~-fC~~Ci~~l~----~CPiCR~~I~~~irly 460 (460)
.+..|+||++.+++ +++ +|||. +|.+|+.++. .||+||++|..++++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 34689999999998 444 99999 8999998876 8999999999999887
No 8
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=9.1e-10 Score=85.72 Aligned_cols=51 Identities=27% Similarity=0.636 Sum_probs=42.6
Q ss_pred CCCCCCCcccccccCCCcceeCCCCccchhhhhcC----CCCCcccccccccccc
Q 012592 409 SSTSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDL----DLCPICRSFIQTRIKL 459 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kdvv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~irl 459 (460)
..+.+...|+||++.+.+++++|||.||..|+.+| ..||+||.++.....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred hcCCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 34566789999999999966799999999999877 4799999999866544
No 9
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.87 E-value=1.3e-10 Score=90.35 Aligned_cols=48 Identities=35% Similarity=0.752 Sum_probs=41.8
Q ss_pred CCCcccccccCCCcc-ee--CCCCc-cchhhhhcCC----CCCccccccccccccC
Q 012592 413 DNHVCPICLTDPKDM-AF--GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 460 (460)
Q Consensus 413 e~~~CpICl~~~kdv-v~--~CGH~-fC~~Ci~~l~----~CPiCR~~I~~~irly 460 (460)
++..|+||++.++++ .+ +|||. +|.+|+.++. .||+||++|..++++|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 557899999999994 44 99999 7889998774 5999999999999887
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=85.82 Aligned_cols=50 Identities=24% Similarity=0.497 Sum_probs=42.0
Q ss_pred CCCCCCCCCcccccccCCCc-cee-CCCCccchhhhhcC----CCCCccccccccc
Q 012592 407 PASSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 456 (460)
Q Consensus 407 ~~~~l~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ 456 (460)
....+++...|+||++.+.+ +++ +|||.||..|+..+ ..||+||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 44556778899999999998 566 99999999999766 4899999998754
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=7.7e-10 Score=85.19 Aligned_cols=49 Identities=33% Similarity=0.794 Sum_probs=39.7
Q ss_pred CCCCCCCCcccccccCCCc--------ceeCCCCccchhhhhcC----CCCCccccccccc
Q 012592 408 ASSTSDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 456 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd--------vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ 456 (460)
.....+...|+||++.+.+ ++++|||.||..|+..| ..||+||.++..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~r 69 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence 3455677899999998765 34599999999999876 4899999988653
No 12
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=1.7e-09 Score=87.74 Aligned_cols=50 Identities=32% Similarity=0.746 Sum_probs=39.6
Q ss_pred CCCCCCCcccccccCCC--ccee-C--CCCccchhhhhcCC-----CCCccccccccccc
Q 012592 409 SSTSDNHVCPICLTDPK--DMAF-G--CGHQTCCGCGQDLD-----LCPICRSFIQTRIK 458 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~k--dvv~-~--CGH~fC~~Ci~~l~-----~CPiCR~~I~~~ir 458 (460)
..++++..|+||++.+. ++.+ + |||.||..|+.++. .||.||+++.....
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34678899999999874 4443 5 99999999997653 79999999876543
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=84.62 Aligned_cols=48 Identities=27% Similarity=0.721 Sum_probs=40.5
Q ss_pred CCCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-----------CCCCcccccccc
Q 012592 408 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----------DLCPICRSFIQT 455 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----------~~CPiCR~~I~~ 455 (460)
...++++..|+||++.+.+ ++++|||.||..|+.++ ..||+||..+..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3456778999999999999 66799999999999853 379999998864
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.81 E-value=4.1e-09 Score=83.99 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccccccCCCc-ceeCCCCccchhhhhc----------CCCCCcccccccc
Q 012592 407 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD----------LDLCPICRSFIQT 455 (460)
Q Consensus 407 ~~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~----------l~~CPiCR~~I~~ 455 (460)
....+.++..|+||++.+.+ ++++|||.||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34556778899999999999 6669999999999975 4589999998864
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.8e-09 Score=85.52 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=39.5
Q ss_pred CCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
....+...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 345567899999999999 55699999999999876 479999999863
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.80 E-value=2e-09 Score=85.28 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccccccCCCc-ceeC-CCCccchhhhhcC------CCCCcccccccc
Q 012592 407 PASSTSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL------DLCPICRSFIQT 455 (460)
Q Consensus 407 ~~~~l~e~~~CpICl~~~kd-vv~~-CGH~fC~~Ci~~l------~~CPiCR~~I~~ 455 (460)
....+.++..|+||++.+.+ ++++ |||.||..|+..+ ..||+||+++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34456778899999999999 6678 9999999999765 379999997643
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=6e-09 Score=83.02 Aligned_cols=49 Identities=31% Similarity=0.728 Sum_probs=41.0
Q ss_pred CCCCCCCCCcccccccCCCc-ceeCCCCccchhhhhc----------CCCCCcccccccc
Q 012592 407 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD----------LDLCPICRSFIQT 455 (460)
Q Consensus 407 ~~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~----------l~~CPiCR~~I~~ 455 (460)
....+.+...|+||++.+.+ ++++|||.||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34456778899999999999 5679999999999975 3589999998864
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=82.32 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=40.3
Q ss_pred CCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCccccccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 456 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~~ 456 (460)
..+.++..|+||++.+++ +.++|||.||..|+.++ ..||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345677899999999998 55799999999999865 3799999998754
No 19
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=92.53 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccccccCCCc-ceeCCCCccchhhhhcCC-----CCCcccccccc
Q 012592 407 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD-----LCPICRSFIQT 455 (460)
Q Consensus 407 ~~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l~-----~CPiCR~~I~~ 455 (460)
......++..|+||++.+.+ ++++|||.||..|+..+. .||+||..+..
T Consensus 8 ~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 8 DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp TCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34455667899999999999 667999999999998773 79999998753
No 20
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.76 E-value=1.7e-09 Score=110.03 Aligned_cols=51 Identities=27% Similarity=0.851 Sum_probs=46.2
Q ss_pred CCCCCCcccccccCCCcce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 012592 410 STSDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 460 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kdvv-~~CGH~-fC~~Ci~~l~~CPiCR~~I~~~irly 460 (460)
.++++..|+||++.+.+.+ ++|||. ||..|+..+..||+||.+|..++++|
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 3456789999999999955 599999 99999999999999999999999987
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.74 E-value=5.1e-09 Score=83.13 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=38.8
Q ss_pred CCCCCCCCcccccccCCCc----ceeCCCCccchhhhhcC----CCCCccccccccc
Q 012592 408 ASSTSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 456 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ 456 (460)
.....+...|+||++.+.+ .+++|||.||..|+.+| ..||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3345667899999998764 23599999999999866 4799999998653
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.74 E-value=4.5e-09 Score=85.97 Aligned_cols=45 Identities=27% Similarity=0.622 Sum_probs=39.0
Q ss_pred CCCCCCCcccccccCCCc-ceeC-CCCccchhhhhcC------CCCCcccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL------DLCPICRSFI 453 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~~-CGH~fC~~Ci~~l------~~CPiCR~~I 453 (460)
..+.++..|+||++.+.+ ++++ |||.||..|+..+ ..||+||.++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 356778999999999999 6678 9999999999765 4899999987
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=6.5e-09 Score=79.34 Aligned_cols=45 Identities=29% Similarity=0.800 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-------CCCCcc
Q 012592 405 APPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPIC 449 (460)
Q Consensus 405 s~~~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-------~~CPiC 449 (460)
......++++..|+||++.+.+ ++++|||.||..|+.++ ..||+|
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3444567788999999999999 56699999999999765 279998
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=6.9e-09 Score=83.66 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=39.5
Q ss_pred CCCCCCCCcccccccCCCc----ce-eCCCCccchhhhhcC-------CCCCcccccccc
Q 012592 408 ASSTSDNHVCPICLTDPKD----MA-FGCGHQTCCGCGQDL-------DLCPICRSFIQT 455 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd----vv-~~CGH~fC~~Ci~~l-------~~CPiCR~~I~~ 455 (460)
...+.+...|+||++.+.+ .+ ++|||.||..|+..+ ..||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4456778899999999887 44 499999999999865 489999998754
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.72 E-value=2.2e-09 Score=94.91 Aligned_cols=44 Identities=30% Similarity=0.696 Sum_probs=37.9
Q ss_pred CCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCccccccccc
Q 012592 413 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 456 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ 456 (460)
++..|+||++.+.+ ++++|||.||..|+..| ..||+||.++..+
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45789999999999 56699999999999876 3799999998654
No 26
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=5.8e-09 Score=78.67 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=38.3
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC-CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-~~CPiCR~~I~~ 455 (460)
.+...|+||++.+.+ ++++|||.||..|+..+ ..||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 466899999999999 66799999999999876 489999998864
No 27
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=9.7e-09 Score=80.70 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=40.2
Q ss_pred CCCCCCCCcccccccCCCc----ceeCCCCccchhhhhcC----CCCCccccccccccc
Q 012592 408 ASSTSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTRIK 458 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ir 458 (460)
...+.++..|+||++.+.+ .+++|||.||..|+..| ..||+||.++.....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3445667899999999765 23499999999999876 489999999876543
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.67 E-value=7.9e-09 Score=82.00 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=39.2
Q ss_pred CCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
.+.++..|+||++.+.+ ++++|||.||..|+.++ ..||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35677899999999999 66799999999999754 479999998864
No 29
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.67 E-value=4.7e-09 Score=81.46 Aligned_cols=45 Identities=36% Similarity=0.857 Sum_probs=37.2
Q ss_pred CCCCCcccccccCCCc--------ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd--------vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
..++..|+||++.+.+ +.++|||.||..|+.+| ..||+||.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3466899999998766 34599999999999766 489999999874
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.5e-08 Score=75.56 Aligned_cols=42 Identities=29% Similarity=0.729 Sum_probs=35.4
Q ss_pred CCCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-------CCCCcc
Q 012592 408 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPIC 449 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-------~~CPiC 449 (460)
...+.+...|+||++.+++ ++++|||.||..|+.++ ..||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456677899999999999 56799999999999866 379988
No 31
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.65 E-value=8.7e-09 Score=79.53 Aligned_cols=47 Identities=32% Similarity=0.800 Sum_probs=38.9
Q ss_pred CCCCcccccccCCCc-c-eeCCCCccchhhhhcC----CCCCccccccccccc
Q 012592 412 SDNHVCPICLTDPKD-M-AFGCGHQTCCGCGQDL----DLCPICRSFIQTRIK 458 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-v-v~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ir 458 (460)
+++..|+||++.+.+ + .++|||.||..|+.+| ..||+||.++...++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence 345689999999988 3 4599999999999765 589999999886554
No 32
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.62 E-value=2.8e-08 Score=83.72 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=41.6
Q ss_pred CCCCCCCCCcccccccCCCc-ceeCCC-CccchhhhhcCC----CCCcccccccc
Q 012592 407 PASSTSDNHVCPICLTDPKD-MAFGCG-HQTCCGCGQDLD----LCPICRSFIQT 455 (460)
Q Consensus 407 ~~~~l~e~~~CpICl~~~kd-vv~~CG-H~fC~~Ci~~l~----~CPiCR~~I~~ 455 (460)
....+.++..||||++.++| |+++|| |.||+.|+..+. .||+||+++..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34456778999999999999 667999 999999998764 79999998864
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.61 E-value=8.1e-09 Score=78.26 Aligned_cols=48 Identities=33% Similarity=0.808 Sum_probs=38.3
Q ss_pred CCCcccccccCCCc--------ceeCCCCccchhhhhcC----CCCCcccccccc--ccccC
Q 012592 413 DNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT--RIKLY 460 (460)
Q Consensus 413 e~~~CpICl~~~kd--------vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~--~irly 460 (460)
++..|+||++.+.+ +.++|||.||.+|+.+| ..||+||.++.. ..++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 45789999998765 34599999999999866 489999999874 44544
No 34
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=2.7e-08 Score=77.08 Aligned_cols=48 Identities=27% Similarity=0.584 Sum_probs=38.2
Q ss_pred CCCCCCcccccccCCCc----ceeCCCCccchhhhhcC----CCCCcccccccccc
Q 012592 410 STSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTRI 457 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~i 457 (460)
...+...|+||++.+.. +.++|||.||..|+..| ..||+||..+...+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34556799999987643 34699999999999876 47999999987654
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.58 E-value=3e-08 Score=73.33 Aligned_cols=44 Identities=30% Similarity=0.713 Sum_probs=36.0
Q ss_pred CCCCCcccccccCCCc----ceeC-CCCccchhhhhcC----CCCCccccccc
Q 012592 411 TSDNHVCPICLTDPKD----MAFG-CGHQTCCGCGQDL----DLCPICRSFIQ 454 (460)
Q Consensus 411 l~e~~~CpICl~~~kd----vv~~-CGH~fC~~Ci~~l----~~CPiCR~~I~ 454 (460)
++++..|+||++.+.+ +.++ |||.||..|+.+| ..||+||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3566799999999876 3455 9999999999877 37999998764
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.57 E-value=1.2e-08 Score=88.18 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=38.0
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
+++..|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456799999999999 66799999999999755 389999999865
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.55 E-value=1.1e-08 Score=85.62 Aligned_cols=46 Identities=28% Similarity=0.625 Sum_probs=39.2
Q ss_pred CCCCCCcccccccCCCc-ce-eCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MA-FGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv-~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
.++++..|+||++.+.+ +. ++|||.||..|+..+ ..||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34567899999999999 66 699999999999866 489999998854
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.54 E-value=3.6e-08 Score=80.65 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=40.5
Q ss_pred CCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
..+.++..|+||++.+++ |+++|||.||+.|+..+ ..||+||+++..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 345678999999999999 66799999999999766 489999998864
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.53 E-value=7.6e-08 Score=81.30 Aligned_cols=47 Identities=17% Similarity=0.038 Sum_probs=40.6
Q ss_pred CCCCCCCcccccccCCCc-ceeCCCCccchhhhhcCC----CCCcccccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD----LCPICRSFIQT 455 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l~----~CPiCR~~I~~ 455 (460)
..+.++..||||++.++| |+++|||.||+.|+..+. .||+||.++..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345678999999999999 677999999999998763 79999998864
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.52 E-value=1.9e-08 Score=85.01 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=39.2
Q ss_pred CCCCCcccccccCCCc-cee-CCCCccchhhhhcC----CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
+.++..|+||++.+.+ +++ +|||.||..|+..+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4567899999999999 666 99999999999876 479999998864
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=1.9e-08 Score=77.28 Aligned_cols=43 Identities=35% Similarity=0.780 Sum_probs=34.8
Q ss_pred CCCccccccc-CCCc-----ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 413 DNHVCPICLT-DPKD-----MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 413 e~~~CpICl~-~~kd-----vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
++..|+||++ .+.+ ++++|||.||..|+.++ ..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 5544 24599999999999876 479999999864
No 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=5.8e-08 Score=76.62 Aligned_cols=45 Identities=27% Similarity=0.675 Sum_probs=36.9
Q ss_pred CCCCCcccccccCCCc----ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd----vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
..++..|+||++.+.+ +.++|||.||..|+..| ..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3466799999988765 34599999999999876 489999998864
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=4.4e-08 Score=84.08 Aligned_cols=45 Identities=24% Similarity=0.568 Sum_probs=39.5
Q ss_pred CCCCCCcccccccCCCc-cee-CCCCccchhhhhcCC--CCCccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDLD--LCPICRSFIQ 454 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l~--~CPiCR~~I~ 454 (460)
.+.+...|+||++.+.+ +++ +|||.||..|+..+. .||+||.++.
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 34677899999999999 667 999999999999884 7999999885
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.46 E-value=6.9e-08 Score=71.27 Aligned_cols=42 Identities=31% Similarity=0.738 Sum_probs=34.8
Q ss_pred CCCcccccccCCCc----c-eeCCCCccchhhhhcC----CCCCccccccc
Q 012592 413 DNHVCPICLTDPKD----M-AFGCGHQTCCGCGQDL----DLCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kd----v-v~~CGH~fC~~Ci~~l----~~CPiCR~~I~ 454 (460)
++..|+||++.+.+ + +++|||.||..|+.+| ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999998754 3 3499999999999876 58999999875
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.46 E-value=3.3e-08 Score=89.53 Aligned_cols=47 Identities=34% Similarity=0.728 Sum_probs=38.6
Q ss_pred CCCCCCCcccccccCCCc-cee-CCCCccchhhhhcC-----CCCCcccccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
..+.+...|+||++.+.+ +++ +|||.||..|+..| ..||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 344566799999999999 566 99999999999865 369999998853
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=4.3e-08 Score=82.51 Aligned_cols=44 Identities=34% Similarity=0.717 Sum_probs=37.1
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC-------CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-------~~CPiCR~~I~~ 455 (460)
.+...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 345789999999999 66799999999999755 279999998864
No 47
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.44 E-value=9e-07 Score=85.81 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=103.5
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccC
Q 012592 118 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPY-EQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFY 193 (460)
Q Consensus 118 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Y-q~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~ 193 (460)
.+++++.||-|+|++. ..+ +.+...+..++..++. +-.|-++.|+.... .+|.|+
T Consensus 21 ~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 79 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLH 79 (281)
T ss_dssp CEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEEC
T ss_pred ceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEcc
Confidence 4789999999999952 234 5666666666666665 66799999987542 345554
Q ss_pred CCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 194 PDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 194 ~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
.... ...+.++++-.++-......|-|+....|+.|.+.....+ +.-.++|+||||..+| ...
T Consensus 80 ~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~ 145 (281)
T 4hqf_A 80 SDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQD 145 (281)
T ss_dssp SSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHH
T ss_pred ccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHH
Confidence 4321 2345565554443323446789999999999988776543 2468899999999875 345
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC-CCccccccCC
Q 012592 271 TVEAIVKASEYPLSIILVGVGDG-PWDMMREFDD 303 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~-~f~~M~~lDd 303 (460)
..+++.++-..-+-|..||||+. +-+.|+.+-+
T Consensus 146 ~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 146 SLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 55666666667799999999985 5555666643
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.43 E-value=6.8e-08 Score=79.52 Aligned_cols=46 Identities=24% Similarity=0.601 Sum_probs=37.4
Q ss_pred CCCCCcccccccCCCc---c-eeCCCCccchhhhhcC----CCCCccccccccc
Q 012592 411 TSDNHVCPICLTDPKD---M-AFGCGHQTCCGCGQDL----DLCPICRSFIQTR 456 (460)
Q Consensus 411 l~e~~~CpICl~~~kd---v-v~~CGH~fC~~Ci~~l----~~CPiCR~~I~~~ 456 (460)
..++..|+||++.+.+ + .++|||.||..|+..| ..||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 4566799999988765 3 4699999999999876 4799999988654
No 49
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.42 E-value=6.2e-08 Score=87.33 Aligned_cols=45 Identities=24% Similarity=0.509 Sum_probs=38.3
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCccccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 456 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~~ 456 (460)
.+...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345799999999999 66799999999999765 3799999998754
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.41 E-value=7e-08 Score=80.11 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=38.2
Q ss_pred CCCCCcccccccCCCc-cee-CCCCccchhhhhcC----CCCCcccccccc
Q 012592 411 TSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 411 l~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
+.+...|+||++.+.+ +++ +|||.||..|+..+ ..||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3456899999999999 566 89999999999765 479999998864
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.41 E-value=7.1e-08 Score=82.87 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=40.2
Q ss_pred CCCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 409 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 409 ~~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
..+.++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 346677899999999999 56699999999999765 389999998865
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=1.3e-07 Score=90.80 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=37.7
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
.+...|+||++.+++ |+++|||.||..|+..+ ..||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356899999999999 66799999999999755 249999999864
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.39 E-value=2.8e-08 Score=88.75 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=38.3
Q ss_pred CCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFI 453 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I 453 (460)
.++++..|+||++.+.+ +.++|||.||..|+.++ ..||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45678899999999999 66799999999999876 3799999975
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.37 E-value=7.8e-08 Score=81.56 Aligned_cols=43 Identities=21% Similarity=0.476 Sum_probs=34.3
Q ss_pred CCcccccccCCCc-c------------------eeCCCCccchhhhhcCC---------CCCccccccccc
Q 012592 414 NHVCPICLTDPKD-M------------------AFGCGHQTCCGCGQDLD---------LCPICRSFIQTR 456 (460)
Q Consensus 414 ~~~CpICl~~~kd-v------------------v~~CGH~fC~~Ci~~l~---------~CPiCR~~I~~~ 456 (460)
+..|+||++.+.+ . .++|||.||..|+..|. .||+||..+..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4589999998744 1 45999999999997653 799999987643
No 55
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.36 E-value=1.3e-06 Score=84.36 Aligned_cols=149 Identities=15% Similarity=0.253 Sum_probs=102.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPY-EQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYP 194 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Y-q~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~ 194 (460)
+++++.||-|+|++. ..+ +++...+..++..|+ ++-.|-++.|+.... .+|+|+.
T Consensus 19 ~DivfvlD~SgSM~~------------------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~~ 77 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGY------------------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLGS 77 (266)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTTS
T ss_pred eeEEEEEECCCCcCh------------------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecCC
Confidence 689999999999952 344 466667777777777 566899999998632 2445433
Q ss_pred CCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc---CCceEEEEEEeCCccccCCCcccCccchhHHHH
Q 012592 195 DEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 271 (460)
Q Consensus 195 ~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s---~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 271 (460)
.. -...+.++++-.++-......|-|+....|+.|.+..... .+.-.++|+||||..+| ....
T Consensus 78 ~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~~ 143 (266)
T 4hqo_A 78 GQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYRA 143 (266)
T ss_dssp HH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHHH
T ss_pred CC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chHH
Confidence 21 1124555555444322235678999999999998887664 23468999999999875 4556
Q ss_pred HHHHHHhcCCCeEEEEEecCCCC-CccccccC
Q 012592 272 VEAIVKASEYPLSIILVGVGDGP-WDMMREFD 302 (460)
Q Consensus 272 i~aIv~AS~~PLSIIiVGVGd~~-f~~M~~lD 302 (460)
.+++.++-+..+.|..||||+.. -+.|+++-
T Consensus 144 ~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA 175 (266)
T 4hqo_A 144 LEVANKLKQRNVRLAVIGIGQGINHQFNRLIA 175 (266)
T ss_dssp HHHHHHHHHTTCEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEecCcccCHHHHHHhh
Confidence 66677776778999999999853 33335543
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.34 E-value=1.9e-07 Score=96.36 Aligned_cols=46 Identities=33% Similarity=0.723 Sum_probs=38.6
Q ss_pred CCCcccccccCCCcc-eeCCCCccchhhhhcC-----CCCCccccccccccc
Q 012592 413 DNHVCPICLTDPKDM-AFGCGHQTCCGCGQDL-----DLCPICRSFIQTRIK 458 (460)
Q Consensus 413 e~~~CpICl~~~kdv-v~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~~ir 458 (460)
....|+||++..+++ .++|||.||..|+..+ ..||+||.++.....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 347999999999994 5699999999999754 589999999986543
No 57
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.33 E-value=4.5e-08 Score=83.53 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=38.7
Q ss_pred CCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
.+.++..|+||++.+.+ +.++|||.||..|+.++ ..||+||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 34566899999999999 56799999999999754 479999999864
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=4.8e-07 Score=75.07 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=35.5
Q ss_pred CCCCCcccccccCCCc-ceeC-CCCccchhhhhcC----------CCCCc--cccc
Q 012592 411 TSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL----------DLCPI--CRSF 452 (460)
Q Consensus 411 l~e~~~CpICl~~~kd-vv~~-CGH~fC~~Ci~~l----------~~CPi--CR~~ 452 (460)
..++..||||++.+++ |+++ |||.||..|+..+ ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999999 6775 9999999999654 28999 9865
No 59
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.21 E-value=1.1e-05 Score=72.11 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=93.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
+++++.||-|+|+... .....+++..+..-+ ..++-.+-++.|+.... .++++..
T Consensus 8 ~div~vlD~SgSM~~~----------------~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~---~~~~l~~---- 62 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHH----------------WNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGT---TLMKLTE---- 62 (185)
T ss_dssp EEEEEEEECSGGGGGG----------------HHHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE---EEEEEEC----
T ss_pred eeEEEEEeCCCChhhh----------------HHHHHHHHHHHHHHh--CCCCcEEEEEEEecCce---EEeccCC----
Confidence 6899999999999510 012223333333322 23456899999987542 2345542
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHh--cC--CceEEEEEEeCCccccCCCcccCccchhHHHHHHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--SG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA 274 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~--s~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~a 274 (460)
+.+.+.++-.+. +.+...|-|+....|+.|.+.... .+ ..-.++++||||..++. ......++
T Consensus 63 --~~~~~~~~i~~l-~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~----------~~~~~~~~ 129 (185)
T 3n2n_F 63 --DREQIRQGLEEL-QKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED----------LFFYSERE 129 (185)
T ss_dssp --CHHHHHHHHHHH-HTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH----------HHHHHHHH
T ss_pred --CHHHHHHHHHHH-hhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC----------cccchHHH
Confidence 444444443333 233457899999999999986522 22 24578999999998751 11133455
Q ss_pred HHHhcCCCeEEEEEecCCCCCccccccCC
Q 012592 275 IVKASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 275 Iv~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
+..+.+..+-|..||||+.+.+.|+++-+
T Consensus 130 ~~~~~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 130 ANRSRDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHHHHHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHHHHHCCCEEEEEEeccCCHHHHHHHhC
Confidence 66666778999999999877777766643
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.19 E-value=3e-07 Score=78.74 Aligned_cols=44 Identities=36% Similarity=0.876 Sum_probs=36.7
Q ss_pred CCCCcccccccCCCc--------ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd--------vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
.++..|+||++.+.+ ++++|||.||..|+.++ ..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 456899999998765 34599999999999866 489999998864
No 61
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.17 E-value=7.6e-06 Score=72.90 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=95.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.++++.||-|+|+... .....+.|...+..++. .+..+-++.|+.... .++++.
T Consensus 7 ~dvv~vlD~SgSM~~~---------------~~~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~---~~~~~~----- 60 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN---------------WIEIYNFVQQLAERFVS---PEMRLSFIVFSSQAT---IILPLT----- 60 (182)
T ss_dssp EEEEEEEECSGGGGGG---------------HHHHHHHHHHHHHHCCC---TTEEEEEEEESSSEE---EEEEEE-----
T ss_pred eeEEEEEECCCCcccC---------------HHHHHHHHHHHHHHhcC---CCceEEEEEeCCCce---EEECCC-----
Confidence 5899999999999520 01122333344444443 567899999987532 234443
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHH
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 276 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv 276 (460)
.+.+.+.++-.. +..+...|.|+....|+.|.+..... ...-.++++||||..++. ......+++.
T Consensus 61 -~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~ 128 (182)
T 1shu_X 61 -GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAK 128 (182)
T ss_dssp -CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHH
T ss_pred -CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHH
Confidence 233333333222 22345679999999999999987654 234588899999997651 1233445555
Q ss_pred HhcCCCeEEEEEecCCCCCccccccCC
Q 012592 277 KASEYPLSIILVGVGDGPWDMMREFDD 303 (460)
Q Consensus 277 ~AS~~PLSIIiVGVGd~~f~~M~~lDd 303 (460)
.+.+..+.|..||||+.+...|+++-+
T Consensus 129 ~~~~~~i~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 129 ISRSLGASVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred HHHhCCCEEEEEeCCcCCHHHHHHHhC
Confidence 666778999999999888777777744
No 62
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=70.19 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=33.2
Q ss_pred CCCcccccccCCCc--------------c-ee-CCCCccchhhhhcC----CCCCcccccccc
Q 012592 413 DNHVCPICLTDPKD--------------M-AF-GCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 413 e~~~CpICl~~~kd--------------v-v~-~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
++..|+||++.+.+ + ++ +|||.|+.+|+.+| ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888887643 2 44 69999999999876 379999998753
No 63
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.15 E-value=1.3e-05 Score=72.20 Aligned_cols=137 Identities=12% Similarity=0.086 Sum_probs=91.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||-|+|++. ..++.+...+..++..|+. .-.+-++.|+.... .+|+|+..
T Consensus 18 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~~ 76 (178)
T 2xgg_A 18 LDICFLIDSSGSIGI------------------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQSP 76 (178)
T ss_dssp EEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTSG
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCCC
Confidence 689999999999951 3567777777778888763 35899999998642 23455432
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
. ....+.++++-.+ ++. ..|.|+....|+.|.+..... ...-.++|+||||..++ ...
T Consensus 77 ~--~~~~~~~~~~i~~-l~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~~ 139 (178)
T 2xgg_A 77 N--AVDKQLAAHAVLD-MPY--KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DFR 139 (178)
T ss_dssp G--GSCHHHHHHHHHH-CCC--CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HHH
T ss_pred C--ccCHHHHHHHHHh-CCC--CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------Ccc
Confidence 1 1245555554333 221 568999999999999875321 12457899999999875 122
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 012592 271 TVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
..+++..+-+..+-|..||||+.
T Consensus 140 ~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 140 TVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HSHHHHHHHHTTCEEEEEECC--
T ss_pred HHHHHHHHHHCCCEEEEEEcCCc
Confidence 33344444455889999999974
No 64
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=6.3e-06 Score=75.70 Aligned_cols=139 Identities=18% Similarity=0.264 Sum_probs=96.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.++++.||.|+|+...+ ..++..+.|...+..++..+. +..+-++.|+.... .++++..
T Consensus 12 ~~iv~vlD~SgSM~~~d-------------~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~~---- 70 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQD-------------VQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPITS---- 70 (218)
T ss_dssp CEEEEEEECSGGGGCCS-------------SSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEES----
T ss_pred CcEEEEEECCcCccccc-------------CCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCCC----
Confidence 57999999999996431 125788888888888888887 55899999997632 2344432
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHh
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
+.+.+.+.-...-+.....|.|++...|+.|.+........-.++|+||||..++. ...+++..+
T Consensus 71 --~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~~ 135 (218)
T 3ibs_A 71 --DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKAA 135 (218)
T ss_dssp --CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHHH
T ss_pred --CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHHH
Confidence 34444443333333344578899999999998776655445578899999998751 233445555
Q ss_pred cCCCeEEEEEecCCC
Q 012592 279 SEYPLSIILVGVGDG 293 (460)
Q Consensus 279 S~~PLSIIiVGVGd~ 293 (460)
.+..+.|..||||+.
T Consensus 136 ~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 136 AEKGIQVSVLGVGMP 150 (218)
T ss_dssp HTTTEEEEEEEESCT
T ss_pred HhcCCEEEEEEecCC
Confidence 667899999999974
No 65
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.14 E-value=4e-06 Score=77.01 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=96.6
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 118 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 118 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
..++++.||-|+|+.+. ......+++..+..-+..++.+-.+-++.|+.... .++.+. .+
T Consensus 15 ~~div~vlD~SgSM~~~---------------~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~---~~~~~~--~~ 74 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGAS---------------NFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS--EA 74 (223)
T ss_dssp CEEEEEEEECSTTTCHH---------------HHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEE---EEECTT--SG
T ss_pred ceeEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccc---eeeccc--cC
Confidence 36899999999999631 01223334444444455566667899999998642 223332 22
Q ss_pred ccCCHHHHHHHHHHhcCcc-eecCCCChHHHHHHHHHHHHhcC--------CceEEEEEEeCCccccCCCcccCccchhH
Q 012592 198 FCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVEHSG--------GQYHVLVIIADGQVTRSVDTEHGQLSSQE 268 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v-~LsGPT~FapVI~~a~~~~~~s~--------~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 268 (460)
.-...+.+.++-..+-+.. ...|-|+....|+.|.+...... ..-.++|+||||..+...| .
T Consensus 75 ~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~---------~ 145 (223)
T 1q0p_A 75 DSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD---------P 145 (223)
T ss_dssp GGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC---------T
T ss_pred CCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC---------h
Confidence 2334555555443332221 24689999999999998876431 3457889999999873111 2
Q ss_pred HHHHHHHHH----------hcCCCeEEEEEecCC-CCCccccccCC
Q 012592 269 KKTVEAIVK----------ASEYPLSIILVGVGD-GPWDMMREFDD 303 (460)
Q Consensus 269 ~~Ti~aIv~----------AS~~PLSIIiVGVGd-~~f~~M~~lDd 303 (460)
....+.+.+ +.+..+-|..||||+ .+.+.|+++=.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~ 191 (223)
T 1q0p_A 146 ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 191 (223)
T ss_dssp HHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhc
Confidence 333444433 345678899999996 45566666643
No 66
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.13 E-value=5.5e-06 Score=87.02 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=104.5
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCC--
Q 012592 118 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPD-- 195 (460)
Q Consensus 118 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~-- 195 (460)
.+++++.||.|+|+.+. .+..+.|...+..++..+.++..|-++.|+.... .++++...
T Consensus 77 ~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~~l~ 137 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGGQLL 137 (464)
T ss_dssp CEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSSSCE
T ss_pred CceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCcccc
Confidence 37999999999999631 3667888888888888888888999999987542 23333210
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAI 275 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aI 275 (460)
.....+.+.+ .+.+..++..|-|++..-|+.|.+...+..+.-.++|+||||+.++. ....+...
T Consensus 138 ~~~~~~~~~l----~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~ 202 (464)
T 4fx5_A 138 RADYQSRAAA----KEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARA 202 (464)
T ss_dssp ECSHHHHHHH----HHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHH
T ss_pred cCCHHHHHHH----HHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHH
Confidence 0001122333 34455667789999999999999988776555688899999997741 12234444
Q ss_pred HHhcCCCeEEEEEecCCC-CCccccccC
Q 012592 276 VKASEYPLSIILVGVGDG-PWDMMREFD 302 (460)
Q Consensus 276 v~AS~~PLSIIiVGVGd~-~f~~M~~lD 302 (460)
.++....+.|..||||+. +.+.|+++-
T Consensus 203 ~~a~~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 203 IQSSIGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp HHHHTTTCEEEEEEESSSSCHHHHHHHH
T ss_pred HHHhcCCCeEEEEEeCCccCHHHHHHHH
Confidence 556677899999999953 555666553
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.11 E-value=8.1e-07 Score=82.79 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=37.6
Q ss_pred CCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
.+...||||++.+++ |+++|||.||..|+..+ ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 356899999999999 66799999999999754 259999998864
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.10 E-value=6.8e-07 Score=81.07 Aligned_cols=46 Identities=26% Similarity=0.659 Sum_probs=39.9
Q ss_pred CCCCCCcccccccCCCc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 455 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~~CGH~fC~~Ci~~l-----~~CPiCR~~I~~ 455 (460)
.+.+...|+||++.+.+ +.++|||.||..|+.++ ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 46678899999999999 55699999999999876 389999998865
No 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.01 E-value=1e-06 Score=75.46 Aligned_cols=44 Identities=36% Similarity=0.876 Sum_probs=36.7
Q ss_pred CCCCcccccccCCCc--------ceeCCCCccchhhhhcC----CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd--------vv~~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
.+...|+||++.+.+ +.++|||.||..|+.+| ..||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 456789999998765 44599999999999865 589999999874
No 70
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.00 E-value=1.8e-05 Score=71.53 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=94.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||-|+|++ .+.++.+...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 6 ~div~vlD~SgSm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~- 63 (189)
T 1atz_A 6 LDVILLLDGSSSFP------------------ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV- 63 (189)
T ss_dssp EEEEEEEECSSSSC------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC-
T ss_pred eeEEEEEeCCCCCC------------------hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC-
Confidence 58999999999995 2457777777777777775 235799999987542 2345532
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
....+.+.++-..+ +. ..|.|+....|+.|.+..... .+.-.++||||||..+|. ..+
T Consensus 64 ---~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~~ 126 (189)
T 1atz_A 64 ---VPEKAHLLSLVDVM-QR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VDA 126 (189)
T ss_dssp ---CCCHHHHHHHHHTC-CC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CHH
T ss_pred ---CCCHHHHHHHHHhC-cC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HHH
Confidence 12455665554432 22 368899999999999887542 234577889999987651 344
Q ss_pred HHHHHHHhcCCCeEEEEEecCC-CCCcccccc
Q 012592 271 TVEAIVKASEYPLSIILVGVGD-GPWDMMREF 301 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd-~~f~~M~~l 301 (460)
..+.+. +..+-|..||||+ .+-..|+.+
T Consensus 127 ~~~~~~---~~gi~v~~igvG~~~~~~~L~~i 155 (189)
T 1atz_A 127 AADAAR---SNRVTVFPIGIGDRYDAAQLRIL 155 (189)
T ss_dssp HHHHHH---HTTEEEEEEEESSSSCHHHHHHH
T ss_pred HHHHHH---HCCCEEEEEEcCCcCCHHHHHHH
Confidence 444444 4688999999998 344455554
No 71
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.98 E-value=2.5e-06 Score=77.26 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=91.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc-CCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF-DEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~y-D~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
.++++.||-|+|+.. ..++.++..+-.++..+ .++-.+-++.|+.... .+++++..
T Consensus 10 ~div~vlD~SgSM~~------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~~-- 66 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEF-- 66 (198)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHHH--
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCcc--
Confidence 589999999999952 24567777777777777 5777899999998632 22333210
Q ss_pred ccCCHHHHHHHHHHhcCcce-ecCCCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccc-cCCCcccCccchhHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKK 270 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~-LsGPT~FapVI~~a~~~-~~~s----~~~Y~VLlIiTDG~i~-d~~d~~~~~~~~~~~~ 270 (460)
.. .+...+.+..+. ..|.|+....|+.|.+. .... .+.-.++|+||||..+ |..+ ..+
T Consensus 67 -----~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~---------~~~ 131 (198)
T 1n3y_A 67 -----RR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLD---------YKD 131 (198)
T ss_dssp -----HH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------HHH
T ss_pred -----CC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCccc---------HHH
Confidence 00 011122344443 67899999999999844 3321 2346789999999987 3211 233
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCC-----CccccccC
Q 012592 271 TVEAIVKASEYPLSIILVGVGDGP-----WDMMREFD 302 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~~-----f~~M~~lD 302 (460)
. +..+.+..+-|..||||+.. .+.|+++=
T Consensus 132 ~---~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA 165 (198)
T 1n3y_A 132 V---IPMADAAGIIRYAIGVGLAFQNRNSWKELNDIA 165 (198)
T ss_dssp H---HHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHS
T ss_pred H---HHHHHHCCCEEEEEEccccccccccHHHHHHHH
Confidence 3 34445567889999999863 45555543
No 72
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.96 E-value=1.8e-05 Score=72.81 Aligned_cols=144 Identities=10% Similarity=0.154 Sum_probs=93.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||-|+|++ .+.++++...+..++..|+ ++-.+-+..|+.... .+|+|+..
T Consensus 14 ~divfvlD~SgSm~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~~ 72 (202)
T 1ijb_A 14 LDLVFLLDGSSRLS------------------EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKDR 72 (202)
T ss_dssp EEEEEEEECBTTSC------------------HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTCC
T ss_pred ccEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCCC
Confidence 68999999999985 2457777787888888887 445899999987642 23555421
Q ss_pred CCccCCHHHHHHHHHHhcCcce-ecC-CCChHHHHHHHHHHH-Hhc--CCceEEEEEEeCCccccCCCcccCccchhHHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLR-LAG-PTSFAPIIEMAITIV-EHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 270 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~-LsG-PT~FapVI~~a~~~~-~~s--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 270 (460)
...+.+.++-. .++ ..| -|+....|+.|.+.. .+. .+.-.++|+||||.-++. + .+.
T Consensus 73 ----~~~~~~~~~i~----~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~--------~--~~~ 134 (202)
T 1ijb_A 73 ----KRPSELRRIAS----QVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR--------M--SRN 134 (202)
T ss_dssp ----CCHHHHHHHHH----TCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG--------G--CTT
T ss_pred ----CCHHHHHHHHH----hCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc--------c--hHH
Confidence 23455544432 333 245 499999999987543 221 234689999999997641 0 112
Q ss_pred HHHHHHHhcCCCeEEEEEecCC-CCCcccccc
Q 012592 271 TVEAIVKASEYPLSIILVGVGD-GPWDMMREF 301 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd-~~f~~M~~l 301 (460)
..+++.++-+..+-|..||||+ .+.+.|+.+
T Consensus 135 ~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~i 166 (202)
T 1ijb_A 135 FVRYVQGLKKKKVIVIPVGIGPHANLKQIRLI 166 (202)
T ss_dssp HHHHHHHHHHTTEEEEEEEESTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCHHHHHHH
Confidence 2333334445689999999996 455566655
No 73
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.94 E-value=1.3e-05 Score=83.30 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=100.8
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceEeeCCCCCCCCcccccCC
Q 012592 118 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYP 194 (460)
Q Consensus 118 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~y---D~D~~ip~fGFGa~~~~~~~vF~~~~ 194 (460)
.+++++.||-|.|++ ...+++|.+.+..++..+ ..+-.+-+..|+.... .+|++..
T Consensus 9 ~~divfvlD~SgSM~------------------~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 67 (509)
T 2odp_A 9 HLNLYLLLDASQSVS------------------ENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLMSVLN 67 (509)
T ss_dssp EEEEEEEEECSTTSC------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEECTTS
T ss_pred CeeEEEEEeCCCccc------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeEeccC
Confidence 468999999999995 134566766676666665 6778999999987542 2344421
Q ss_pred CCCccCCHHHHHHHHHHhcCccee-cCCCChHHHHHHHHHHHHhcC-----------CceEEEEEEeCCccccCCCcccC
Q 012592 195 DEKFCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHSG-----------GQYHVLVIIADGQVTRSVDTEHG 262 (460)
Q Consensus 195 ~~~~c~G~egvl~~Yr~~l~~v~L-sGPT~FapVI~~a~~~~~~s~-----------~~Y~VLlIiTDG~i~d~~d~~~~ 262 (460)
+.-...+.++++-.++-..... .|.|+....|+.|.+..+... ..-.++++||||.-++..|
T Consensus 68 --~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~---- 141 (509)
T 2odp_A 68 --DNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGS---- 141 (509)
T ss_dssp --GGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSC----
T ss_pred --CCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCC----
Confidence 1223456665543332211111 378999999999988774321 1347889999998775322
Q ss_pred ccchhHHHHHHHHHHh------cCCCeEEEEEecCC--CCCccccccCC
Q 012592 263 QLSSQEKKTVEAIVKA------SEYPLSIILVGVGD--GPWDMMREFDD 303 (460)
Q Consensus 263 ~~~~~~~~Ti~aIv~A------S~~PLSIIiVGVGd--~~f~~M~~lDd 303 (460)
..+..+.+.+. .+..+-|..||||+ .+.+.|+++-+
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~ 185 (509)
T 2odp_A 142 -----PKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGS 185 (509)
T ss_dssp -----THHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSC
T ss_pred -----hhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhcc
Confidence 34455555532 26678899999998 57777877754
No 74
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.93 E-value=5.8e-05 Score=70.25 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=89.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||-|+|+. .++++...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 23 ~div~vlD~SgSM~--------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~~- 78 (223)
T 2b2x_A 23 LDIVIVLDGSNSIY--------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLNK- 78 (223)
T ss_dssp EEEEEEEECSTTCC--------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTTT-
T ss_pred ceEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecCC-
Confidence 68999999999984 15677777777777775 577899999987542 2345521
Q ss_pred CCccCCHHHHHHHHHHhcCcce-ecC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCccccCCCcccCccchhH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLR-LAG-PTSFAPIIEMAITIV-EH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 268 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~-LsG-PT~FapVI~~a~~~~-~~----s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 268 (460)
....+.++++ +..+. ..| -|+....|+.|.+.. .. ..+.-.++|+||||..++..
T Consensus 79 ---~~~~~~~~~~----i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~----------- 140 (223)
T 2b2x_A 79 ---YSSTEEVLVA----ANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY----------- 140 (223)
T ss_dssp ---CCSHHHHHHH----HTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG-----------
T ss_pred ---CCCHHHHHHH----HHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-----------
Confidence 2345666554 33444 345 499999999998762 21 12345789999999987621
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC
Q 012592 269 KKTVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 269 ~~Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
...+++..+.+..+-|..||||+.
T Consensus 141 -~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 141 -RLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp -GHHHHHHHHHTTTEEEEEEEECGG
T ss_pred -cHHHHHHHHHHCCCEEEEEEecCc
Confidence 223344445567899999999964
No 75
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.92 E-value=3.5e-06 Score=82.81 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=38.6
Q ss_pred CCCCCCcccccccCCCc-cee-CCCCccchhhhhcCC------CCCc--ccccccc
Q 012592 410 STSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDLD------LCPI--CRSFIQT 455 (460)
Q Consensus 410 ~l~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l~------~CPi--CR~~I~~ 455 (460)
....+..||||++.+++ |+. .|||.||+.|+..+. .||+ ||+.+..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34677899999999999 655 999999999997652 6999 9998754
No 76
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.88 E-value=8.2e-05 Score=68.61 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=88.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||-|+|+. .++.+...+-.++..++ ++-.+-++.|+.... .+|+|..
T Consensus 8 ~div~vlD~SgSm~--------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~~- 63 (213)
T 1pt6_A 8 LDIVIVLDGSNSIY--------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLNK- 63 (213)
T ss_dssp EEEEEEEECCTTCC--------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEeccc-
Confidence 58999999999984 15566666666777665 677899999997542 2345521
Q ss_pred CCccCCHHHHHHHHHHhcCcce-ecC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCccccCCCcccCccchhH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLR-LAG-PTSFAPIIEMAITIV-EH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 268 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~-LsG-PT~FapVI~~a~~~~-~~----s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 268 (460)
....+.++++-. .+. ..| -|+....|+.|.+.. .. ....-.++++||||..++.
T Consensus 64 ---~~~~~~~~~~i~----~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------------ 124 (213)
T 1pt6_A 64 ---YSSTEEVLVAAK----KIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------ 124 (213)
T ss_dssp ---CSSHHHHHHHHH----TCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS------------
T ss_pred ---cCCHHHHHHHHH----hccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------
Confidence 235566665443 333 356 499999999998753 21 1234688999999998762
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC
Q 012592 269 KKTVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 269 ~~Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
....+++..+.+..+-|..||||+.
T Consensus 125 ~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 125 HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 1233344444556889999999963
No 77
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.84 E-value=2.5e-06 Score=77.04 Aligned_cols=152 Identities=13% Similarity=0.216 Sum_probs=90.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~-yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
.++++.||-|+|+. | +..+.|...+..++.. +..+..+-++.|+..... .++++.
T Consensus 6 ~~vv~vlD~SgSM~--~----------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~--~~~~~~---- 61 (189)
T 2x31_A 6 RVLIFAVDASGSAA--V----------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ--VLLQPS---- 61 (189)
T ss_dssp CEEEEEEECCTTSC--C------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC--BCTTTC----
T ss_pred eEEEEEEECCCCCC--c----------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce--EecCCC----
Confidence 47999999999994 1 2333444444444433 366778999999963221 122221
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCccchh-HHHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQ-EKKTVEA 274 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~-~~~Ti~a 274 (460)
.+.+.+.+. +..+...|-|++...|+.|.+...+.. +.-.++|+||||..++..+..+.. ++ .++..++
T Consensus 62 --~~~~~~~~~----i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~--~~~~~~~~~~ 133 (189)
T 2x31_A 62 --RSLTQTKRQ----LQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANR--ELAGEQATKV 133 (189)
T ss_dssp --SCHHHHHHH----HHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHH--GGGTCCCEEE
T ss_pred --CCHHHHHHH----HhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccc--cchhHHHHHH
Confidence 245555443 334556799999999999999887643 235788999999987532100000 00 0011122
Q ss_pred HHHhcCCCeEEEEEecCCCCCccccccC
Q 012592 275 IVKASEYPLSIILVGVGDGPWDMMREFD 302 (460)
Q Consensus 275 Iv~AS~~PLSIIiVGVGd~~f~~M~~lD 302 (460)
+..+.+..+.|+.||+|+.+...|+++-
T Consensus 134 ~~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 134 ARAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp EECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 2223345678888999988666666653
No 78
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=9.2e-05 Score=72.90 Aligned_cols=164 Identities=13% Similarity=0.234 Sum_probs=112.1
Q ss_pred cceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCCCccc-c
Q 012592 116 LESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVF-S 191 (460)
Q Consensus 116 le~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~---yD~D~~ip~fGFGa~~~~~~~vF-~ 191 (460)
||+ ++|.||-|.|+.... + .+|-++.+...+-.++.. -+....+-+..|+.... .|. +
T Consensus 3 lEA--tViviD~S~SM~~~D---~----------~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~---~vl~p 64 (268)
T 4b4t_W 3 LEA--TVLVIDNSEYSRNGD---F----------PRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANP---RVLST 64 (268)
T ss_dssp CEE--EEEEECCSSTTSSTT---S----------SSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC---EEEEE
T ss_pred cee--EEEEEECCHHHhCCC---C----------CCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcc---eeccC
Confidence 553 789999999995321 1 368888777666666653 45567899999976432 121 2
Q ss_pred cCCCCCccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCccchhHH
Q 012592 192 FYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEK 269 (460)
Q Consensus 192 ~~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 269 (460)
+ -.....++. .+..++..|-|+++.-|+.|...++.. ...-..+||++||.+.+ +.+
T Consensus 65 l------T~D~~~il~----aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~ 123 (268)
T 4b4t_W 65 F------TAEFGKILA----GLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRD 123 (268)
T ss_dssp E------ESCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHH
T ss_pred C------cchHHHHHH----HhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHH
Confidence 2 224455555 466788999999999999999998754 23456678889998775 367
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCCC--ccccccCCCCCccccceeeeecc
Q 012592 270 KTVEAIVKASEYPLSIILVGVGDGPW--DMMREFDDNIPARAFDNFQFVNF 318 (460)
Q Consensus 270 ~Ti~aIv~AS~~PLSIIiVGVGd~~f--~~M~~lDd~~~~R~~DnvqFV~f 318 (460)
+.++++.++.+.-++|-+||+|.+++ +.|+.|=+......-|+-+||..
T Consensus 124 ~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 124 ELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 78888888888888888899987654 45666632222222377778765
No 79
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.81 E-value=4.9e-05 Score=78.58 Aligned_cols=153 Identities=12% Similarity=0.132 Sum_probs=99.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~---yD~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
+++++.||-|+|++. +.++.|...+..++.. +..+-.+-++.|++... .++.|.
T Consensus 2 ~div~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~~-- 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGA------------------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS-- 58 (497)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTT--
T ss_pred eeEEEEEECCCCcch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeeccc--
Confidence 579999999999951 4566665555555554 55567899999997532 223332
Q ss_pred CCccCCHHHHHHHHHHhcCcc-eecCCCChHHHHHHHHHHHHhc--------CCceEEEEEEeCCccccCCCcccCccch
Q 012592 196 EKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVEHS--------GGQYHVLVIIADGQVTRSVDTEHGQLSS 266 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v-~LsGPT~FapVI~~a~~~~~~s--------~~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 266 (460)
.+.-...+.++++-.++-+.- ...|.|+....|+.|.+..... ...-.++++||||.-++..
T Consensus 59 ~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--------- 129 (497)
T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--------- 129 (497)
T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS---------
T ss_pred cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC---------
Confidence 233345666666554443222 2567899999999999887321 1245789999999877522
Q ss_pred hHHHHHHHHHHhc----------CCCeEEEEEecCC-CCCccccccCC
Q 012592 267 QEKKTVEAIVKAS----------EYPLSIILVGVGD-GPWDMMREFDD 303 (460)
Q Consensus 267 ~~~~Ti~aIv~AS----------~~PLSIIiVGVGd-~~f~~M~~lDd 303 (460)
+..+..+.+.+.. +..+-|..||||+ .+.+.|++|=.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 130 DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp CTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred ChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 2345555555442 2278899999997 46666666644
No 80
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.78 E-value=4.8e-06 Score=75.55 Aligned_cols=142 Identities=17% Similarity=0.232 Sum_probs=91.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC-CCccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~-D~~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
.++++.||-|+|++. ..++++...+..++..++. +-.+-++.|+.... .+|+|+...
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~- 63 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIP------------------HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQ- 63 (194)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHH-
T ss_pred eeEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcC-
Confidence 589999999999951 3567777777777777763 45899999988642 234443210
Q ss_pred ccCCHHHHHHHHHHhcCcce-ecCCCChHHHHHHHHHHH-Hh-c---CCceEEEEEEeCCccc-cCCCcccCccchhHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIV-EH-S---GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKK 270 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~-LsGPT~FapVI~~a~~~~-~~-s---~~~Y~VLlIiTDG~i~-d~~d~~~~~~~~~~~~ 270 (460)
.-..+. +.+..+. ..|-|+....|+.|.+.. .. . .+.-.++++||||..+ |..+ ..+
T Consensus 64 ~~~~~~-------~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~---------~~~ 127 (194)
T 1mf7_A 64 NNPNPR-------SLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG---------YED 127 (194)
T ss_dssp HSCCHH-------HHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------GGG
T ss_pred CHHHHH-------HHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh---------hHH
Confidence 001222 2334444 478999999999998643 22 1 1245889999999987 4221 123
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCC-----Ccccccc
Q 012592 271 TVEAIVKASEYPLSIILVGVGDGP-----WDMMREF 301 (460)
Q Consensus 271 Ti~aIv~AS~~PLSIIiVGVGd~~-----f~~M~~l 301 (460)
.++ ++-+..+.|..||||+.. .+.|+++
T Consensus 128 ~~~---~~~~~gi~v~~igvG~~~~~~~~~~~L~~i 160 (194)
T 1mf7_A 128 VIP---EADREGVIRYVIGVGDAFRSEKSRQELNTI 160 (194)
T ss_dssp THH---HHHHTTEEEEEEEESGGGCSHHHHHHHHHH
T ss_pred HHH---HHHHCCCEEEEEEecccccccccHHHHHHH
Confidence 333 334568999999999853 3455554
No 81
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.75 E-value=0.00025 Score=65.88 Aligned_cols=163 Identities=14% Similarity=0.215 Sum_probs=105.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceEeeCCCCCCCCcccccCCCC
Q 012592 120 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYPDE 196 (460)
Q Consensus 120 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~y---D~D~~ip~fGFGa~~~~~~~vF~~~~~~ 196 (460)
.++++||.|.|+...+ + .+|-.+.|...+-.++..| .....+-+..|++...+. +.+++
T Consensus 4 ~lvlvlD~S~SM~~~D---~----------~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~--~~plT--- 65 (192)
T 2x5n_A 4 ATMILIDNSEWMINGD---Y----------IPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV--LSTLT--- 65 (192)
T ss_dssp EEEEEECCSGGGGCTT---S----------SSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE--EEEEE---
T ss_pred EEEEEEECCHhhccCC---C----------CCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE--ecCCC---
Confidence 5899999999996421 1 3788998888777766544 445689999998743221 12332
Q ss_pred CccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcC--Cce-EEEEEEeCCccccCCCcccCccchhHHHHHH
Q 012592 197 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQY-HVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 273 (460)
Q Consensus 197 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~--~~Y-~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~ 273 (460)
.+.+.+++ .+..+...|.|++..-|+.|.+..++.. ... -|+|+++|+. ++ +..+..+
T Consensus 66 ---~d~~~i~~----~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~ 126 (192)
T 2x5n_A 66 ---RDYGKFLS----AMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIR 126 (192)
T ss_dssp ---SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHH
T ss_pred ---CCHHHHHH----HHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHH
Confidence 23445544 3455778899999999999999887653 223 3455555544 32 2456667
Q ss_pred HHHHhcCCCeEEEEEecCCCCCcc-ccccCCCCCccccceeeeeccccc
Q 012592 274 AIVKASEYPLSIILVGVGDGPWDM-MREFDDNIPARAFDNFQFVNFTEI 321 (460)
Q Consensus 274 aIv~AS~~PLSIIiVGVGd~~f~~-M~~lDd~~~~R~~DnvqFV~f~~~ 321 (460)
++..+.+.-+.|.+||+|..+... |+.|=+... .-||-+||...+-
T Consensus 127 ~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 127 LAKRMKKNNVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPPS 173 (192)
T ss_dssp HHHHHHHTTEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECCC
T ss_pred HHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecCc
Confidence 777777889999999999876532 776643211 1277888864443
No 82
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.73 E-value=0.0001 Score=80.02 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=96.5
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCcccccCC
Q 012592 118 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYP 194 (460)
Q Consensus 118 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~---~yD~D~~ip~fGFGa~~~~~~~vF~~~~ 194 (460)
.+++++.||-|+|++. +.+++|...+..++. .++..-.|-+.-|+.... .++.|+.
T Consensus 243 ~~div~vlD~SgSM~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGA------------------SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp EEEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred ceeEEEEeccCCcccc------------------cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 3689999999999952 234455554444444 444556799999987532 2344433
Q ss_pred CCCccCCHHHHHHHHHHhcCcce-----ecCCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCccccCCCccc
Q 012592 195 DEKFCNGFEEVLRRYRELVPHLR-----LAGPTSFAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEH 261 (460)
Q Consensus 195 ~~~~c~G~egvl~~Yr~~l~~v~-----LsGPT~FapVI~~a~~~~~~--------s~~~Y~VLlIiTDG~i~d~~d~~~ 261 (460)
. .-...+.++++ +..+. ..|-|+.+..|+.|.+.... ....-.++|+||||+-+.-.
T Consensus 302 ~--~~~~~~~~~~~----i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~---- 371 (741)
T 3hrz_D 302 A--DSSNADWVTKQ----LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---- 371 (741)
T ss_dssp G--GGGCHHHHHHH----HTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS----
T ss_pred c--CCcCHHHHHHH----HHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC----
Confidence 1 11345556554 44444 67899999999999988721 11235789999999876421
Q ss_pred CccchhHHHHHHHHH----------HhcCCCeEEEEEecCC-CCCccccccCC
Q 012592 262 GQLSSQEKKTVEAIV----------KASEYPLSIILVGVGD-GPWDMMREFDD 303 (460)
Q Consensus 262 ~~~~~~~~~Ti~aIv----------~AS~~PLSIIiVGVGd-~~f~~M~~lDd 303 (460)
+....++.|. ++.+..+.|..||||+ .+.+.|++|-.
T Consensus 372 -----~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 372 -----DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp -----CTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred -----CchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 2345555555 3445678999999997 56666666644
No 83
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.69 E-value=0.00027 Score=64.42 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=88.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||-|.|+. | ++++...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 7 ~div~vlD~SgSm~-------------------~-~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~~- 62 (200)
T 1v7p_C 7 IDVVVVCDESNSIY-------------------P-WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLNT- 62 (200)
T ss_dssp EEEEEEEECCTTCC-------------------C-HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCCcc-------------------c-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCCC-
Confidence 58999999999983 1 5677777777777776 567899999987542 2455542
Q ss_pred CCccCCHHHHHHHHHHhcCccee-cC-CCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccccCCCcccCccchhH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQE 268 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~L-sG-PT~FapVI~~a~~~-~~~s----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 268 (460)
....+.++++-.+ +.. .| -|+....|+.|.+. .... .+.-.++|+||||..++.. +.
T Consensus 63 ---~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~---------~~ 126 (200)
T 1v7p_C 63 ---YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS---------ML 126 (200)
T ss_dssp ---CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG---------GH
T ss_pred ---cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc---------cH
Confidence 2356666665443 332 35 59999999999885 3221 2345789999999987621 12
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCC
Q 012592 269 KKTVEAIVKASEYPLSIILVGVGD 292 (460)
Q Consensus 269 ~~Ti~aIv~AS~~PLSIIiVGVGd 292 (460)
.+ ++.++.+..+-|..||||+
T Consensus 127 ~~---~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 127 KA---VIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp HH---HHHHHHHTTEEEEEEEECH
T ss_pred HH---HHHHHHHCCCEEEEEEecc
Confidence 33 3334445688999999964
No 84
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.69 E-value=1.4e-05 Score=68.15 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=33.1
Q ss_pred CCCcccccccCCCcc------------------e-eCCCCccchhhhhcC----CCCCccccccc
Q 012592 413 DNHVCPICLTDPKDM------------------A-FGCGHQTCCGCGQDL----DLCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kdv------------------v-~~CGH~fC~~Ci~~l----~~CPiCR~~I~ 454 (460)
++..|.||++.+.+. + ++|||.|+..|+..| ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 446899999876531 2 499999999999876 47999999853
No 85
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.63 E-value=1e-05 Score=66.58 Aligned_cols=40 Identities=23% Similarity=0.490 Sum_probs=31.7
Q ss_pred CCCcccccccCCCc-ce--e-CCCCccchhhhhcC------------CCCCc--cccc
Q 012592 413 DNHVCPICLTDPKD-MA--F-GCGHQTCCGCGQDL------------DLCPI--CRSF 452 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv--~-~CGH~fC~~Ci~~l------------~~CPi--CR~~ 452 (460)
+...|+||++.+.+ .. + +|||.||.+|+... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999998876 33 3 79999999998521 37999 9988
No 86
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=4.4e-05 Score=61.95 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=36.3
Q ss_pred CCCCcccccccCCCc---ceeCCC-----CccchhhhhcC------CCCCccccccccccc
Q 012592 412 SDNHVCPICLTDPKD---MAFGCG-----HQTCCGCGQDL------DLCPICRSFIQTRIK 458 (460)
Q Consensus 412 ~e~~~CpICl~~~kd---vv~~CG-----H~fC~~Ci~~l------~~CPiCR~~I~~~ir 458 (460)
.++..|.||++.+.+ ++++|. |.|..+|+.+| ..||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 345689999987643 555996 99999999877 379999998865433
No 87
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.56 E-value=1.2e-05 Score=70.03 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=0.4
Q ss_pred CCcccccccCCCc------------------ce-eCCCCccchhhhhcCC----CCCccccccc
Q 012592 414 NHVCPICLTDPKD------------------MA-FGCGHQTCCGCGQDLD----LCPICRSFIQ 454 (460)
Q Consensus 414 ~~~CpICl~~~kd------------------vv-~~CGH~fC~~Ci~~l~----~CPiCR~~I~ 454 (460)
+..|.||++.+.+ ++ .+|+|.|+..|+..|. .||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4589999988654 12 3899999999998873 7999999853
No 88
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.31 E-value=0.00016 Score=66.19 Aligned_cols=138 Identities=9% Similarity=0.206 Sum_probs=92.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 195 (460)
.++++.||-|.|++ .+.++++...+-.++..|+ ++-.|-+..|+.... .+|+|+.
T Consensus 22 ~DivfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 79 (199)
T 3zqk_A 22 LDVAFVLEGSDKIG------------------EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE- 79 (199)
T ss_dssp CEEEEEEECCTTTC------------------HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS-
T ss_pred cCEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC-
Confidence 58999999999985 2456777777777777775 667899999998643 2355542
Q ss_pred CCccCCHHHHHHHHHHhcCcceecCC-CChHHHHHHHHHHH-Hh-cC---CceEEEEEEeCCccccCCCcccCccchhHH
Q 012592 196 EKFCNGFEEVLRRYRELVPHLRLAGP-TSFAPIIEMAITIV-EH-SG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEK 269 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v~LsGP-T~FapVI~~a~~~~-~~-s~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 269 (460)
....+.++++-.++ +. ..|. |+...-|+.|.+.. .. .+ +.-.++|+||||...|.+.
T Consensus 80 ---~~~~~~~~~~i~~l-~~--~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------- 142 (199)
T 3zqk_A 80 ---AQSKGDILQRLREI-RY--QGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------- 142 (199)
T ss_dssp ---CCCHHHHHHHHHHC-CC--CCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC-----------
T ss_pred ---cCCHHHHHHHHHhC-cC--CCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH-----------
Confidence 23456666654432 22 3454 99999888887642 21 11 2347899999999776321
Q ss_pred HHHHHHHHhcCCCeEEEEEecC-CCCCccccccCC
Q 012592 270 KTVEAIVKASEYPLSIILVGVG-DGPWDMMREFDD 303 (460)
Q Consensus 270 ~Ti~aIv~AS~~PLSIIiVGVG-d~~f~~M~~lDd 303 (460)
++ ...+.|.-|||| +.+.+.|+++=.
T Consensus 143 -------~~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 -------RL-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp -------CC-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred -------HH-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 01 256889999999 667777777643
No 89
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.14 E-value=0.00014 Score=55.89 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=36.4
Q ss_pred CCcccccccCCCc-cee-CCCCccchhhhhcC----CCCCcccccccc
Q 012592 414 NHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 455 (460)
Q Consensus 414 ~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l----~~CPiCR~~I~~ 455 (460)
...|+||++.+.| ++. +|||.||++|+.+| ..||++++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 3689999999999 667 89999999999877 379999998864
No 90
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.06 E-value=0.0014 Score=58.83 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=86.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCC-ccceEeeCCCCCCCCcccccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDN-LIPCFGFGDASTHDQEVFSFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~-~ip~fGFGa~~~~~~~vF~~~~~~~ 197 (460)
.++++.||-|.|++ ...++++...+..++..++.++ .+-+..|+.... .+|+|+...
T Consensus 3 ~divfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~---~~~~l~~~~- 60 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQ------------------PDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYK---TEFDFSDYV- 60 (179)
T ss_dssp EEEEEEEECBTTCC------------------HHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEE---EEECHHHHH-
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCcee---EEEcCcccC-
Confidence 57999999999985 1346777777777777776554 799999997543 234443210
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccccCCCcccCccchhHHHHH
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 272 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~-~~~s----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti 272 (460)
.-..++.++ +.++. +.|-|+....|+.|.+. .... .+.-.++++||||..+|..+ +
T Consensus 61 ~~~~~~~~~----~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-----~-------- 121 (179)
T 1mjn_A 61 KRKDPDALL----KHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-----I-------- 121 (179)
T ss_dssp HHCCHHHHH----TTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-----C--------
T ss_pred CHHHHHHHH----Hhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-----h--------
Confidence 001233332 22333 45889999999999864 2221 23457999999999886321 0
Q ss_pred HHHHHhcCCCeEEEEEecCCCCC-----cccccc
Q 012592 273 EAIVKASEYPLSIILVGVGDGPW-----DMMREF 301 (460)
Q Consensus 273 ~aIv~AS~~PLSIIiVGVGd~~f-----~~M~~l 301 (460)
.++ .-+-|..||||+..- +.|+.+
T Consensus 122 ---~~~--~~i~i~~igvG~~~~~~~~~~~L~~i 150 (179)
T 1mjn_A 122 ---DAA--KDIIRYIIGIGKHFQTKESQETLHKF 150 (179)
T ss_dssp ---GGG--TTSEEEEEEESGGGCSHHHHHTTGGG
T ss_pred ---HHH--CCCEEEEEEccccccccccHHHHHHH
Confidence 022 357788899997532 455555
No 91
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.05 E-value=0.0041 Score=67.31 Aligned_cols=158 Identities=13% Similarity=0.244 Sum_probs=102.8
Q ss_pred hcCcceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCC----
Q 012592 113 RAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH---- 185 (460)
Q Consensus 113 ~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~---yD~D~~ip~fGFGa~~~~---- 185 (460)
.+|-+ .++++||.|.|+.... + +...+..+.|++.|..+++. -.....|-++.||...+.
T Consensus 32 ~~~ke--~ivf~IDvS~SM~~~d---~--------~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~ 98 (609)
T 1jey_A 32 YSGRD--SLIFLVDASKAMFESQ---S--------EDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVN 98 (609)
T ss_dssp --CEE--EEEEEEECSGGGGCCC---S--------SSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTC
T ss_pred ccCce--EEEEEEECCHHHcCCC---C--------CCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCC
Confidence 35555 4999999999995321 0 12478999999999998875 344569999999987642
Q ss_pred CCcccccCC-CCCccCCHHHHHHH------------HHHhcCcceecCCCChHHHHHHHHHHHHhcCCc--eEEEEEEeC
Q 012592 186 DQEVFSFYP-DEKFCNGFEEVLRR------------YRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQ--YHVLVIIAD 250 (460)
Q Consensus 186 ~~~vF~~~~-~~~~c~G~egvl~~------------Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~--Y~VLlIiTD 250 (460)
..+++-+.+ +.+ +.+ .+.. +...++. ...|.+...|..|+++.+..+.+ =-++++|||
T Consensus 99 ~d~i~v~~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~---~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TD 171 (609)
T 1jey_A 99 FKNIYVLQELDNP---GAK-RILELDQFKGQQGQKRFQDMMGH---GSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTN 171 (609)
T ss_dssp CTTEEEEEEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCC---SCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEES
T ss_pred CCCeEEEecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCC---CCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcC
Confidence 123332222 111 222 1222 2222222 45799999999999998765433 358899999
Q ss_pred CccccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCC-Cc
Q 012592 251 GQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP-WD 296 (460)
Q Consensus 251 G~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~-f~ 296 (460)
|.-. ++.-+..+.....++..+.++-+.|.+||||..+ |+
T Consensus 172 g~~p------~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 172 EDNP------HGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp CSCT------TTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred CCCC------CCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 9753 2222223456677777888999999999999753 54
No 92
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.97 E-value=0.001 Score=76.71 Aligned_cols=142 Identities=18% Similarity=0.288 Sum_probs=95.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-CccceEeeCCCCCCCCcccccCC--C
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED-NLIPCFGFGDASTHDQEVFSFYP--D 195 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D-~~ip~fGFGa~~~~~~~vF~~~~--~ 195 (460)
+++++.||-|.|++ .+.++++...+..++..|+.+ -.|-+..|+.... .+|.|+. +
T Consensus 131 ~DIvfvlD~SgSm~------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~~~~ 189 (1095)
T 3k6s_A 131 QDIVFLIDGSGSIS------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFRR 189 (1095)
T ss_dssp EEEEEEEECCTTSC------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHHHHS
T ss_pred ccEEEEEcCCCCCC------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcccCC
Confidence 68999999999985 356788888888899999866 5899999987542 2344432 1
Q ss_pred CCccCCHHHHHHHHHHhcCcc-eecCCCChHHHHHHHHHHHH-hc----CCceEEEEEEeCCccc-cCCCcccCccchhH
Q 012592 196 EKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVE-HS----GGQYHVLVIIADGQVT-RSVDTEHGQLSSQE 268 (460)
Q Consensus 196 ~~~c~G~egvl~~Yr~~l~~v-~LsGPT~FapVI~~a~~~~~-~s----~~~Y~VLlIiTDG~i~-d~~d~~~~~~~~~~ 268 (460)
.. .+. +++..+ .+.|-|+.+.-|+.|.+.+- +. .+.-.|+|+||||..+ |.. +.
T Consensus 190 ~~---~l~-------~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~---------~~ 250 (1095)
T 3k6s_A 190 SS---NPL-------SLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL---------DY 250 (1095)
T ss_dssp CS---CGG-------GGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSS---------CH
T ss_pred HH---HHH-------HHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCch---------hH
Confidence 11 111 223333 35788999999999977542 11 1235799999999984 321 13
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC-----CCccccccCC
Q 012592 269 KKTVEAIVKASEYPLSIILVGVGDG-----PWDMMREFDD 303 (460)
Q Consensus 269 ~~Ti~aIv~AS~~PLSIIiVGVGd~-----~f~~M~~lDd 303 (460)
.+.++.+ -+.-+-|..||||+. +.+.|+++-+
T Consensus 251 ~~~a~~~---r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 251 KDVIPMA---DAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp HHHHHHH---HHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred HHHHHHH---HHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 3444444 444788999999986 6666766644
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.84 E-value=0.00049 Score=58.36 Aligned_cols=41 Identities=27% Similarity=0.518 Sum_probs=33.1
Q ss_pred cccccccCCCc--ceeCCCCccchhhhhc-----CCCCCccccccccc
Q 012592 416 VCPICLTDPKD--MAFGCGHQTCCGCGQD-----LDLCPICRSFIQTR 456 (460)
Q Consensus 416 ~CpICl~~~kd--vv~~CGH~fC~~Ci~~-----l~~CPiCR~~I~~~ 456 (460)
.|++|--..+. -.+||.|.||.+|+.. -..||.|+.+|..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 58888777666 4569999999999954 45899999998764
No 94
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.48 E-value=0.0085 Score=64.13 Aligned_cols=151 Identities=16% Similarity=0.244 Sum_probs=97.3
Q ss_pred hcCcceeceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCC---
Q 012592 113 RAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHD--- 186 (460)
Q Consensus 113 ~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~---~yD~D~~ip~fGFGa~~~~~--- 186 (460)
.+|-. -.++++||.|.|+.... .+ ..+..+.|...|..+++ .......|-+..||...+..
T Consensus 3 ~~~~k-e~iv~~iDvS~SM~~~d-----------~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt 69 (565)
T 1jey_B 3 RSGNK-AAVVLCMDVGFTMSNSI-----------PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLS 69 (565)
T ss_dssp ---CC-EEEEEEEECCGGGGCCB-----------TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTC
T ss_pred CCCCc-eEEEEEEECChHhcccC-----------CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccc
Confidence 34553 26999999999995321 01 46899999999999888 36677899999999865321
Q ss_pred -----CcccccCCCCCccCCHHHHHHHHHHhcCcceec-CCCChHHHHHHHHHHHHhc--CCce--EEEEEEeCCccccC
Q 012592 187 -----QEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLA-GPTSFAPIIEMAITIVEHS--GGQY--HVLVIIADGQVTRS 256 (460)
Q Consensus 187 -----~~vF~~~~~~~~c~G~egvl~~Yr~~l~~v~Ls-GPT~FapVI~~a~~~~~~s--~~~Y--~VLlIiTDG~i~d~ 256 (460)
.+++-+.+-. .... .+++...+ .+..+ +.|.+...|..|+++.++. +.++ -++++||||+-.-
T Consensus 70 ~d~~y~~i~vl~~l~--~~~~-~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~- 142 (565)
T 1jey_B 70 GGDQYQNITVHRHLM--LPDF-DLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRF- 142 (565)
T ss_dssp TTTCSTTEEEEEEEE--CCCH-HHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCC-
T ss_pred cccCCCceEEeecCC--CCCH-HHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCC-
Confidence 1221111100 0111 33443333 23333 6799999999999988765 3334 5889999997542
Q ss_pred CCcccCccchhHHHHHHHHHHhcCCCeEEE-EEecCCC
Q 012592 257 VDTEHGQLSSQEKKTVEAIVKASEYPLSII-LVGVGDG 293 (460)
Q Consensus 257 ~d~~~~~~~~~~~~Ti~aIv~AS~~PLSII-iVGVGd~ 293 (460)
+ .....+++..+.+.-+.|. +||+|..
T Consensus 143 -----~-----~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 143 -----S-----KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp -----C-----CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred -----C-----HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1 1234556667778899999 8999864
No 95
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.22 E-value=0.031 Score=59.33 Aligned_cols=139 Identities=11% Similarity=0.147 Sum_probs=83.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.+++|+||.|+|+.... . +++| .+.++.-.++-+.. -.+..+-++.|++... .+++.++
T Consensus 369 ~~v~lvvD~SgSM~~~~---~-~~~l--------~~~~~Aa~l~~~~~--~~~d~vglv~Fs~~~~----~~~~t~~--- 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV---L-GSIL--------NASVVAAAMCMLVA--RTEKDSHMVAFSDEML----PCPITVN--- 427 (538)
T ss_dssp CCEEEEEECSGGGGSBS---T-TSSC--------BHHHHHHHHHHHHH--HHCSSEEEEEESSSEE----CCSCCTT---
T ss_pred ceEEEEEECccccCCCC---C-CCcH--------HHHHHHHHHHHHHh--ccCCceEEEEECCCce----EcCCCCc---
Confidence 58999999999996421 1 1111 23333222222211 1234688899986321 1233332
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHh
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
.++..+++.-. .+ ..|-|+++..|..+.+. ....-++|+||||+.++. .-+ ..+.++.+.+.
T Consensus 428 -~~l~~~l~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g------~~~--~~~~l~~~~~~ 489 (538)
T 1yvr_A 428 -MLLHEVVEKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVE------DVH--PATALKQYREK 489 (538)
T ss_dssp -SCHHHHHHHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSS------SCC--HHHHHHHHHHH
T ss_pred -ccHHHHHHHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCC------CCC--HHHHHHHHHHH
Confidence 24666665433 22 56889999999888754 233568899999987641 111 34555666766
Q ss_pred cCCCeEEEEEecCCCCCc
Q 012592 279 SEYPLSIILVGVGDGPWD 296 (460)
Q Consensus 279 S~~PLSIIiVGVGd~~f~ 296 (460)
.+.++.+++||||.....
T Consensus 490 ~~~~v~l~~igig~~~~~ 507 (538)
T 1yvr_A 490 MGIPAKLIVCAMTSNGFS 507 (538)
T ss_dssp HTCCCEEEEEECSSSSEE
T ss_pred hCCCcEEEEEEecCCCCc
Confidence 678899999999986543
No 96
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.14 E-value=0.0061 Score=48.83 Aligned_cols=45 Identities=20% Similarity=0.508 Sum_probs=35.5
Q ss_pred CCCCcccccccCCCc-cee-CCCCccchhhhhcC------CCCCccccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPICRSFIQTR 456 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci~~l------~~CPiCR~~I~~~ 456 (460)
+....|.||.+.... ..- .|+|.|-..|+.+| .+||+||......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 344789999998876 322 89999999999865 4799999987643
No 97
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.80 E-value=0.0028 Score=64.60 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=35.1
Q ss_pred CCCCcccccccCCCc-ce--------eCCCCccchhhhhcCC---------------CCCccccccccc
Q 012592 412 SDNHVCPICLTDPKD-MA--------FGCGHQTCCGCGQDLD---------------LCPICRSFIQTR 456 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv--------~~CGH~fC~~Ci~~l~---------------~CPiCR~~I~~~ 456 (460)
+....|.||++...+ .. ..|||.|-..|+.+|. .||.||++|...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456799999997665 21 2699999999997652 599999998754
No 98
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=95.24 E-value=0.099 Score=55.65 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=84.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
.+++|+||.|+|+.+.+ ... ....+..+.|. .++-++..-+ ..+-++.|++.... ..+.++
T Consensus 363 ~~~lv~vDvSgSM~~~~-------~~~--~~k~~~~e~Aa-~la~~~~r~~--d~v~lv~Fs~~~~~----~~~~~~--- 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGD-------VAG--VPGLTPNMAAA-AMSLIALRTE--PDALTMGFAEQFRP----LGITPR--- 423 (535)
T ss_dssp SEEEEEECCSGGGGSCC-------GGG--CTTCCHHHHHH-HHHHHHHHHS--SEEEEEEEBSSEEE----CCCCTT---
T ss_pred ceEEEEEECCccccCCC-------CCC--CCcccHHHHHH-HHHHHHcCcC--CceEEEEECCcceE----cCCCcc---
Confidence 57899999999996411 000 11245444443 4444333322 26888999874211 122222
Q ss_pred cCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHh
Q 012592 199 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 278 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~A 278 (460)
.++.++++. +.. . ..|.|+++..|+.+.+ .....-+++|||||+... |..++ .+.++...+.
T Consensus 424 -~~l~~~l~~---l~~-~-~~ggTdi~~~l~~a~~----~~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~ 485 (535)
T 2nvo_A 424 -DTLESAMQK---AQS-V-SFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQK 485 (535)
T ss_dssp -CCHHHHHHH---TCC-S-SBCCCCTTHHHHHHHH----TTCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHH
T ss_pred -hhHHHHHHH---Hhh-C-CCCCccHHHHHHHHHH----hcCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHh
Confidence 456655553 222 1 3688999988877643 234567889999998764 22223 3566666666
Q ss_pred cCCCeEEEEEecCCCC
Q 012592 279 SEYPLSIILVGVGDGP 294 (460)
Q Consensus 279 S~~PLSIIiVGVGd~~ 294 (460)
.+.++-+++||||...
T Consensus 486 ~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 486 MGRAPKLIVVGLTATE 501 (535)
T ss_dssp HSCCCEEEEEETTCSC
T ss_pred hCCCCeEEEEeccCCC
Confidence 6789999999999864
No 99
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.59 E-value=0.015 Score=44.43 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=32.3
Q ss_pred CCCCcccccccCCCc-ceeCCC--C---ccchhhhhcC------CCCCcccccccc
Q 012592 412 SDNHVCPICLTDPKD-MAFGCG--H---QTCCGCGQDL------DLCPICRSFIQT 455 (460)
Q Consensus 412 ~e~~~CpICl~~~kd-vv~~CG--H---~fC~~Ci~~l------~~CPiCR~~I~~ 455 (460)
++...|.||++...+ .+.||. | .+-..|+.+| ..||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 355689999987555 445865 3 5667999876 479999998764
No 100
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.55 E-value=0.05 Score=45.62 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=40.9
Q ss_pred CCCCCCCCcccccccCCCcceeCCCCccchhhhhcCC----CCCcccccccccccc
Q 012592 408 ASSTSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDLD----LCPICRSFIQTRIKL 459 (460)
Q Consensus 408 ~~~l~e~~~CpICl~~~kdvv~~CGH~fC~~Ci~~l~----~CPiCR~~I~~~irl 459 (460)
...+-.-.-|..|+-..+..+--.-|.+|..|+..+. .||+|..++.++|++
T Consensus 22 d~s~~G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CccccCcccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3445566789999987776554556889999998763 799999999988875
No 101
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.30 E-value=0.11 Score=42.61 Aligned_cols=30 Identities=23% Similarity=0.637 Sum_probs=24.2
Q ss_pred CCCcccccccC-CCc-ce--eCCCCccchhhhhc
Q 012592 413 DNHVCPICLTD-PKD-MA--FGCGHQTCCGCGQD 442 (460)
Q Consensus 413 e~~~CpICl~~-~kd-vv--~~CGH~fC~~Ci~~ 442 (460)
++..|.||.+. +.+ +. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 45789999975 455 55 59999999999985
No 102
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=90.17 E-value=0.94 Score=42.90 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=63.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 198 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 198 (460)
+.|.+.+|+|.|++.. .+.-+..+..|.+-|+.+..+-.|-+-+|-++. ..++++|..
T Consensus 4 vDl~fl~D~S~SM~~d----------------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~---- 61 (212)
T 2iue_A 4 VDLYFLMGLSGSAQGH----------------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA---- 61 (212)
T ss_dssp EEEEEEEECCGGGTTT----------------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES----
T ss_pred eEEEEEEeCCCcchhH----------------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC----
Confidence 5789999999999631 355666777777777777666555444454551 123344432
Q ss_pred cCCHHHHHHHHHHhcCcceecC----CCC-hHHHHHHHH--HHHHhcCCceEEEEEEeCCccccC
Q 012592 199 CNGFEEVLRRYRELVPHLRLAG----PTS-FAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTRS 256 (460)
Q Consensus 199 c~G~egvl~~Yr~~l~~v~LsG----PT~-FapVI~~a~--~~~~~s~~~Y~VLlIiTDG~i~d~ 256 (460)
.++.. .+.+.....+| |-. |.-+++.+. +.....+ .-++||++||+..+..
T Consensus 62 --d~~~F----~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 62 --DSSQF----QRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp --CHHHH----HHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCT
T ss_pred --CHHHH----HHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcccc
Confidence 23333 33344455555 433 333444332 2223344 5699999999987753
No 103
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=87.49 E-value=2.5 Score=47.88 Aligned_cols=123 Identities=17% Similarity=0.214 Sum_probs=70.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHH---HHHHHhhcccccCCCCccceEeeCCCCCCCC--------
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQ---AISIIGKTLSSFDEDNLIPCFGFGDASTHDQ-------- 187 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~---AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~-------- 187 (460)
+.++++||.|+|+... .+. .....++ |+..+...|.. ..+..|-+..|+.......
T Consensus 225 ~DIVfVLD~SGSM~~~--------~~~----~~~Rl~~~K~a~~~~ld~L~~-~~~drVgLV~Fs~~a~~~~~~~v~~~~ 291 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNI--------RNK----NARRAERAGEATRSLIDKITS-DSENRVALVTYASTIFDGTEFTVEKGV 291 (893)
T ss_dssp EEEEEEEECCGGGCTT--------HHH----HCCHHHHHHHHHHHHHHHHHT-STTCEEEEEEESSSBCBSCEEEEECCE
T ss_pred ccEEEEEeCCCCCCCc--------Ccc----chhHHHHHHHHHHHHHHHhhc-CCCcEEEEEEecCcccccccccccccc
Confidence 5699999999999631 000 0113443 44444444433 3467899999997532100
Q ss_pred ------------------cccccCCCCCcc-----CCHHHHHHHHHHhcCc----------ceecCCCChHHHHHHHHHH
Q 012592 188 ------------------EVFSFYPDEKFC-----NGFEEVLRRYRELVPH----------LRLAGPTSFAPIIEMAITI 234 (460)
Q Consensus 188 ------------------~vF~~~~~~~~c-----~G~egvl~~Yr~~l~~----------v~LsGPT~FapVI~~a~~~ 234 (460)
..|... ..++| ...+.+ +.-++.++. +...|-|+...-|..|+++
T Consensus 292 ~~~~g~~~n~~~~w~~~~t~~t~~-~~~~~~lpLT~d~~~i-~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~l 369 (893)
T 2ww8_A 292 ADKNGKRLNDSLFWNYDQTSFTTN-TKDYSYLKLTNDKNDI-VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEI 369 (893)
T ss_dssp ECTTCCEECCCTTSCTTCCEEEEE-CCBCCEEEEECCHHHH-HHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccCCHHHH-HHHHHHHhhhccccccccccccCCCChHHHHHHHHHHH
Confidence 001000 01122 233333 333455654 3446889999999999999
Q ss_pred HHhc--CCceEEEEEEeCCccccC
Q 012592 235 VEHS--GGQYHVLVIIADGQVTRS 256 (460)
Q Consensus 235 ~~~s--~~~Y~VLlIiTDG~i~d~ 256 (460)
.++. ...=-++|+||||+-+.+
T Consensus 370 L~~~~~~~~~kvIILLTDG~pt~~ 393 (893)
T 2ww8_A 370 LTQQARQNSQKVIFHITDGVPTMS 393 (893)
T ss_dssp HHHHSCSSSEEEEEEEESSCCSEE
T ss_pred HHhhcccCCCeEEEEEcCCCCCcc
Confidence 8642 233468899999988753
No 104
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=71.66 E-value=1.9 Score=41.38 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=32.3
Q ss_pred CCcccccccCCCccee--CCCCccchhhhhcC------CCCCcccccccc
Q 012592 414 NHVCPICLTDPKDMAF--GCGHQTCCGCGQDL------DLCPICRSFIQT 455 (460)
Q Consensus 414 ~~~CpICl~~~kdvv~--~CGH~fC~~Ci~~l------~~CPiCR~~I~~ 455 (460)
...|.||.+....-.. .|+|.|-..|+..+ ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4689999988765332 59999999999764 289999987643
No 105
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=70.19 E-value=3.1 Score=33.97 Aligned_cols=29 Identities=31% Similarity=0.804 Sum_probs=24.3
Q ss_pred CCCcccccccCCCccee-CC----CCccchhhhh
Q 012592 413 DNHVCPICLTDPKDMAF-GC----GHQTCCGCGQ 441 (460)
Q Consensus 413 e~~~CpICl~~~kdvv~-~C----GH~fC~~Ci~ 441 (460)
..+.|-+|.+...|.-| .| +|.||..|.+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 45799999999999665 67 5999999986
No 106
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=67.53 E-value=5.8 Score=43.64 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=31.0
Q ss_pred HHHHHHhcCcceecC----CC-ChHHHHHHHH--HHHHhcCCceEEEEEEeCCcccc
Q 012592 206 LRRYRELVPHLRLAG----PT-SFAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTR 255 (460)
Q Consensus 206 l~~Yr~~l~~v~LsG----PT-~FapVI~~a~--~~~~~s~~~Y~VLlIiTDG~i~d 255 (460)
.+.+++.+..+..+| |- -|.-|++.|. +.+....+..++||++||...+-
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~ 256 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCcccc
Confidence 345566677777766 33 3544554442 33444455789999999987663
No 107
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=63.78 E-value=4.2 Score=39.25 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=27.9
Q ss_pred ceEEEEEEeCCccccCCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 012592 241 QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 294 (460)
Q Consensus 241 ~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 294 (460)
.--++++||||.-+- |. .| .++...|.+.-+-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 346889999998552 21 22 23334455667899999998753
No 108
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.58 E-value=5.5 Score=30.42 Aligned_cols=35 Identities=31% Similarity=0.770 Sum_probs=27.6
Q ss_pred CcccccccCCCc-cee---CCCCccchhhhh----cCCCCCcc
Q 012592 415 HVCPICLTDPKD-MAF---GCGHQTCCGCGQ----DLDLCPIC 449 (460)
Q Consensus 415 ~~CpICl~~~kd-vv~---~CGH~fC~~Ci~----~l~~CPiC 449 (460)
..|-.|+..+.+ .++ .|++.||.+|-. .+..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 359999988876 334 789999999973 56799998
No 109
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=57.43 E-value=13 Score=35.87 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=57.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCccc-ccCCCCC
Q 012592 119 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVF-SFYPDEK 197 (460)
Q Consensus 119 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Yq~AI~~Ig~il~~yD~D~~ip~fGFGa~~~~~~~vF-~~~~~~~ 197 (460)
..+++.||-|+|+. + .......|+..+..-+..+-....|-++.|+........+. .|...
T Consensus 135 ~~vvfLVDtSgSM~--~--------------kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~-- 196 (242)
T 3rag_A 135 LHLVVCLDTSASMR--D--------------KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSE-- 196 (242)
T ss_dssp EEEEEEEECSGGGT--T--------------THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESS--
T ss_pred CCEEEEEECcccHH--H--------------HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCCh--
Confidence 57999999999994 1 12334444444443333343567999999998643222222 33322
Q ss_pred ccCCHHHHHHHHHHhcCcceecCCCChHHHHHHHHHHHHh
Q 012592 198 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH 237 (460)
Q Consensus 198 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapVI~~a~~~~~~ 237 (460)
. .+.. .++.+...|-|..++-|+.|.++.+.
T Consensus 197 -~-~~~~-------~l~~L~agG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 197 -V-NVAA-------LEAELVARGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp -C-CHHH-------HHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred -H-HHHH-------HHhhCCCCCCCcHHHHHHHHHHHHHH
Confidence 1 2222 23446678999999999999998764
No 110
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.34 E-value=21 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=23.2
Q ss_pred CCCCcccccccCCCcce-----eCCCCccchhhhhc
Q 012592 412 SDNHVCPICLTDPKDMA-----FGCGHQTCCGCGQD 442 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv-----~~CGH~fC~~Ci~~ 442 (460)
.+...|.+|...|.-.. -.||+.||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 44568999998876521 28999999999753
No 111
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=39.68 E-value=16 Score=37.29 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=31.3
Q ss_pred CCCcccccccCCCc-cee-CCCCccchhhh--------hcCCCCCccccccc
Q 012592 413 DNHVCPICLTDPKD-MAF-GCGHQTCCGCG--------QDLDLCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci--------~~l~~CPiCR~~I~ 454 (460)
-.+.||+-....+. +.- .|.|.-|.+-. ...+.||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 34799999988888 433 89999777543 24479999988763
No 112
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=39.35 E-value=17 Score=39.99 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHhcCcceecC----CCC-hHHHHHHHH--HHHHhcCCceEEEEEEeCCcccc
Q 012592 207 RRYRELVPHLRLAG----PTS-FAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTR 255 (460)
Q Consensus 207 ~~Yr~~l~~v~LsG----PT~-FapVI~~a~--~~~~~s~~~Y~VLlIiTDG~i~d 255 (460)
+++.+.+..+..+| |-. |.-|++.|. +...... ..++||++||...+-
T Consensus 193 ~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~ 247 (687)
T 3k6s_B 193 NQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHF 247 (687)
T ss_dssp HHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCcccc
Confidence 34445555555555 433 444444442 3344444 678999999987653
No 113
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.25 E-value=5.7 Score=35.70 Aligned_cols=39 Identities=23% Similarity=0.540 Sum_probs=28.5
Q ss_pred CCcccccccCCC---c-ce--eCCCCccchhhhhc-----CCCCCccccc
Q 012592 414 NHVCPICLTDPK---D-MA--FGCGHQTCCGCGQD-----LDLCPICRSF 452 (460)
Q Consensus 414 ~~~CpICl~~~k---d-vv--~~CGH~fC~~Ci~~-----l~~CPiCR~~ 452 (460)
+..|.+|...+. + -. ..|.|.+|..|... .+.|-+|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 468999998643 2 22 38999999999843 3578888764
No 114
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.73 E-value=26 Score=32.49 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=22.0
Q ss_pred CCCcccccccCCCcc---e--eCCCCccchhhhh
Q 012592 413 DNHVCPICLTDPKDM---A--FGCGHQTCCGCGQ 441 (460)
Q Consensus 413 e~~~CpICl~~~kdv---v--~~CGH~fC~~Ci~ 441 (460)
+...|.+|...|.-. . -.||+.||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 346999999877542 1 2899999999975
No 115
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.17 E-value=29 Score=32.50 Aligned_cols=42 Identities=21% Similarity=0.525 Sum_probs=29.0
Q ss_pred CCcccccccCCCcc---e--eCCCCccchhhhhcC------------CCCCcccccccc
Q 012592 414 NHVCPICLTDPKDM---A--FGCGHQTCCGCGQDL------------DLCPICRSFIQT 455 (460)
Q Consensus 414 ~~~CpICl~~~kdv---v--~~CGH~fC~~Ci~~l------------~~CPiCR~~I~~ 455 (460)
...|.+|...|.-. . -.||+.||..|.... +.|-.|-..+..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 45899998876542 1 289999999997521 367777655543
No 116
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=35.48 E-value=21 Score=36.30 Aligned_cols=42 Identities=19% Similarity=0.450 Sum_probs=31.4
Q ss_pred CCCcccccccCCCc-cee-CCCCccchhhh--------hcCCCCCccccccc
Q 012592 413 DNHVCPICLTDPKD-MAF-GCGHQTCCGCG--------QDLDLCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kd-vv~-~CGH~fC~~Ci--------~~l~~CPiCR~~I~ 454 (460)
-.+.||+-....+. +.. .|.|.-|.+-. ...+.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 45789999988887 433 89999777544 23469999998764
No 117
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=35.32 E-value=5.4 Score=33.55 Aligned_cols=39 Identities=33% Similarity=0.780 Sum_probs=23.7
Q ss_pred CCCcccccccCCCcceeCCCCccchhhhhcCC---CCCccccccc
Q 012592 413 DNHVCPICLTDPKDMAFGCGHQTCCGCGQDLD---LCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kdvv~~CGH~fC~~Ci~~l~---~CPiCR~~I~ 454 (460)
.+..||+|...... .=++..|..|..... .||.|.++++
T Consensus 31 M~~~CP~Cq~eL~~---~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQ---DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEE---ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccccCccCCCccee---cCCEEECccccchhhccccCcchhhHHH
Confidence 34799999865332 113334667765443 6777777664
No 118
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=32.02 E-value=26 Score=36.89 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=28.1
Q ss_pred HHHHHhcCcceecC----CCC-hHHHHHHHH--HHHHhcCCceEEEEEEeCCcccc
Q 012592 207 RRYRELVPHLRLAG----PTS-FAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTR 255 (460)
Q Consensus 207 ~~Yr~~l~~v~LsG----PT~-FapVI~~a~--~~~~~s~~~Y~VLlIiTDG~i~d 255 (460)
+.+++.+.++..+| |-. |.-|++.|. +........-++||++||...+-
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~ 256 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCc
Confidence 34455555555555 433 444444442 33334444579999999987663
No 119
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.35 E-value=42 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=22.4
Q ss_pred CCCCcccccccCCCcce-----eCCCCccchhhhh
Q 012592 412 SDNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 441 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv-----~~CGH~fC~~Ci~ 441 (460)
.+...|.+|...|.-.. -.||..||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34468999998875421 2899999999975
No 120
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.96 E-value=31 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=21.0
Q ss_pred CcccccccCCCcce-----eCCCCccchhhhh
Q 012592 415 HVCPICLTDPKDMA-----FGCGHQTCCGCGQ 441 (460)
Q Consensus 415 ~~CpICl~~~kdvv-----~~CGH~fC~~Ci~ 441 (460)
..|.+|...|.-.. -.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 58999998776421 1899999999975
No 121
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.46 E-value=81 Score=25.08 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=17.6
Q ss_pred CCcccccccCCCccee--CCCCccch
Q 012592 414 NHVCPICLTDPKDMAF--GCGHQTCC 437 (460)
Q Consensus 414 ~~~CpICl~~~kdvv~--~CGH~fC~ 437 (460)
...|..|.....-+.+ .||..||.
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs 50 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCG 50 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECS
T ss_pred CCcChhhCCcccccCeecCCCCEech
Confidence 4589999876544445 78888987
No 122
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.35 E-value=88 Score=24.87 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=18.8
Q ss_pred CCCCcccccccCCCccee--CCCCccchh
Q 012592 412 SDNHVCPICLTDPKDMAF--GCGHQTCCG 438 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv~--~CGH~fC~~ 438 (460)
.....|..|.....-+.| .||..||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 345689999876544444 788889873
No 123
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.22 E-value=8.2 Score=33.89 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=28.5
Q ss_pred CCcccccccCCC---c-ce--eCCCCccchhhhhcC--------CCCCccccc
Q 012592 414 NHVCPICLTDPK---D-MA--FGCGHQTCCGCGQDL--------DLCPICRSF 452 (460)
Q Consensus 414 ~~~CpICl~~~k---d-vv--~~CGH~fC~~Ci~~l--------~~CPiCR~~ 452 (460)
+..|.+|...+. + -. ..|.|.+|..|.... +.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 458999998763 1 12 389999999998633 478888764
No 124
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.31 E-value=39 Score=27.98 Aligned_cols=41 Identities=27% Similarity=0.712 Sum_probs=29.8
Q ss_pred CCcccccccCC---Cc-cee----CCCCccchhhhh-----cCCCCCccccccc
Q 012592 414 NHVCPICLTDP---KD-MAF----GCGHQTCCGCGQ-----DLDLCPICRSFIQ 454 (460)
Q Consensus 414 ~~~CpICl~~~---kd-vv~----~CGH~fC~~Ci~-----~l~~CPiCR~~I~ 454 (460)
...|.||-+.. .+ -+| .|+--.|+.|.+ .-..||.|.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 36999998862 22 122 788889999986 2358999998775
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=28.15 E-value=37 Score=27.40 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=22.1
Q ss_pred CCCcccccccCCCcce-----eCCCCccchhhhh
Q 012592 413 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 441 (460)
Q Consensus 413 e~~~CpICl~~~kdvv-----~~CGH~fC~~Ci~ 441 (460)
+...|.+|...|.-.. -.||+.||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 4458999998776421 2899999999975
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.84 E-value=37 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCCcccccccCCCcc---e--eCCCCccchhhhhc
Q 012592 413 DNHVCPICLTDPKDM---A--FGCGHQTCCGCGQD 442 (460)
Q Consensus 413 e~~~CpICl~~~kdv---v--~~CGH~fC~~Ci~~ 442 (460)
+...|.+|...+.-. . -.||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 345799999876542 1 28999999999863
No 127
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=26.78 E-value=95 Score=23.64 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=26.9
Q ss_pred CCcccccccCCCccee--CCCCccchhhhhc--------CCCCCccccc
Q 012592 414 NHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRSF 452 (460)
Q Consensus 414 ~~~CpICl~~~kdvv~--~CGH~fC~~Ci~~--------l~~CPiCR~~ 452 (460)
...|.||.+. .++++ .|...|-..|+.. -+.|+.|+..
T Consensus 12 ~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3579999864 33555 7888888888842 1489999754
No 128
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=26.70 E-value=79 Score=32.80 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=60.3
Q ss_pred CccceEeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHHh------cCcceecCCCChHHHHHHHHHHHHhcCCceEEE
Q 012592 172 NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYREL------VPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVL 245 (460)
Q Consensus 172 ~~ip~fGFGa~~~~~~~vF~~~~~~~~c~G~egvl~~Yr~~------l~~v~LsGPT~FapVI~~a~~~~~~s~~~Y~VL 245 (460)
-.+||||||..-+. +..|+ +|. .-..+++.++.-.++ .+.|.|..|-.. .-++...+.+++.+-. +.
T Consensus 52 is~~~W~f~~~g~~-~~~~~-~~g--~~r~~~e~~~d~~~v~~l~~~~~~v~lH~p~d~-~d~~~lk~~l~e~GL~--l~ 124 (438)
T 3m0m_A 52 VAVPSWGVGTGGTR-FARFP-GTG--EPRGIFDKLDDCAVIQQLTRATPNVSLHIPWDK-ADPKELKARGDALGLG--FD 124 (438)
T ss_dssp CBEEGGGSSBCBCS-SCBCC-CSS--CCCSHHHHHHHHHHHHHHHSCCCEEEEETTTTC-CCHHHHHHHHHHHTCE--EE
T ss_pred eeeceecccCCCCc-cccCC-CCC--CCCCHHHHHHHHHHHhcccCCCcceeecCCccH-HHHHHHHHHHHHcCCc--eE
Confidence 47999999975443 33343 222 224577776655443 467788888754 4455556666776633 32
Q ss_pred EEEe----C--CccccCCCcccCccc-hhH-------HHHHHHHHHhcCCCeEEEEEecCCC
Q 012592 246 VIIA----D--GQVTRSVDTEHGQLS-SQE-------KKTVEAIVKASEYPLSIILVGVGDG 293 (460)
Q Consensus 246 lIiT----D--G~i~d~~d~~~~~~~-~~~-------~~Ti~aIv~AS~~PLSIIiVGVGd~ 293 (460)
.|-+ + |+... ...|.|+ +|. +..+++|..|..+....+.+-.|++
T Consensus 125 ~i~~~~f~hp~~~~~~---Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~lv~w~GdG 183 (438)
T 3m0m_A 125 AMNSNTFSDAPGQAHS---YKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDG 183 (438)
T ss_dssp EEECCCSSCCTTCSSC---CTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCCE
T ss_pred EeecccccCchhcccc---cccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 2222 2 11111 1112232 222 3556677777777777776666643
No 129
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.59 E-value=26 Score=27.64 Aligned_cols=22 Identities=27% Similarity=0.732 Sum_probs=17.8
Q ss_pred CCCCccchhhhhcCCCCCccccc
Q 012592 430 GCGHQTCCGCGQDLDLCPICRSF 452 (460)
Q Consensus 430 ~CGH~fC~~Ci~~l~~CPiCR~~ 452 (460)
.|||.||..|...+.. -.|...
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCCeeccccCccccC-Cccccc
Confidence 4999999999998876 667553
No 130
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.54 E-value=13 Score=28.64 Aligned_cols=41 Identities=29% Similarity=0.700 Sum_probs=24.1
Q ss_pred CCCCCcccccccC-CCc-ce---eCCCCccchhhhhcC--------CCCCcccc
Q 012592 411 TSDNHVCPICLTD-PKD-MA---FGCGHQTCCGCGQDL--------DLCPICRS 451 (460)
Q Consensus 411 l~e~~~CpICl~~-~kd-vv---~~CGH~fC~~Ci~~l--------~~CPiCR~ 451 (460)
..+..+|.||+.. |.| .- .-|.-.||..|.-.+ +.|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3466799999853 333 11 134445666776433 36777775
No 131
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.29 E-value=67 Score=23.88 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=26.5
Q ss_pred CCCCcccccccCCCccee--CCCCccchhhhhc--------CCCCCccccc
Q 012592 412 SDNHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRSF 452 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv~--~CGH~fC~~Ci~~--------l~~CPiCR~~ 452 (460)
.++..|.||.+. .++++ .|...|-..|+.. -+.||.|+..
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345689999863 23554 6776666677752 1479999764
No 132
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.29 E-value=46 Score=26.22 Aligned_cols=30 Identities=23% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCCcccccccCCCcce-----eCCCCccchhhhhc
Q 012592 413 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQD 442 (460)
Q Consensus 413 e~~~CpICl~~~kdvv-----~~CGH~fC~~Ci~~ 442 (460)
+...|.+|...|.-.. -.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4458999998776421 28999999999863
No 133
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=23.93 E-value=76 Score=26.02 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCCCCcccccccCCCcceeCC---CCccchhhhhc
Q 012592 411 TSDNHVCPICLTDPKDMAFGC---GHQTCCGCGQD 442 (460)
Q Consensus 411 l~e~~~CpICl~~~kdvv~~C---GH~fC~~Ci~~ 442 (460)
...+..|.||-.......++| +-.|--.|+++
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhccc
Confidence 345679999997777777765 44455588865
No 134
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.67 E-value=75 Score=24.58 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=17.8
Q ss_pred CCCcccccccCCCccee--CCCCccchh
Q 012592 413 DNHVCPICLTDPKDMAF--GCGHQTCCG 438 (460)
Q Consensus 413 e~~~CpICl~~~kdvv~--~CGH~fC~~ 438 (460)
....|..|.....-+.| -||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 34589999876443344 788889873
No 135
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.73 E-value=18 Score=36.41 Aligned_cols=42 Identities=21% Similarity=0.535 Sum_probs=0.0
Q ss_pred CCCcccccccCCCcc-----eeCCCCccchhhhhc-----------CCCCCccccccc
Q 012592 413 DNHVCPICLTDPKDM-----AFGCGHQTCCGCGQD-----------LDLCPICRSFIQ 454 (460)
Q Consensus 413 e~~~CpICl~~~kdv-----v~~CGH~fC~~Ci~~-----------l~~CPiCR~~I~ 454 (460)
+...|.+|...+.-. --.||+.||..|... .+.|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 345799998876531 128999999999852 236877765543
No 136
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=59 Score=26.33 Aligned_cols=42 Identities=26% Similarity=0.570 Sum_probs=27.3
Q ss_pred CCCCCcccccccCCCc--cee--CCCCccchhhhhc--------CCCCCccccc
Q 012592 411 TSDNHVCPICLTDPKD--MAF--GCGHQTCCGCGQD--------LDLCPICRSF 452 (460)
Q Consensus 411 l~e~~~CpICl~~~kd--vv~--~CGH~fC~~Ci~~--------l~~CPiCR~~ 452 (460)
..+...|.||...-.. +++ .|...|-..|+.. -+.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3455689999976532 555 7775555566641 1479999764
No 137
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.82 E-value=20 Score=35.65 Aligned_cols=41 Identities=22% Similarity=0.574 Sum_probs=29.4
Q ss_pred CCCCcccccccCCCccee-----CCC--CccchhhhhcCC----CCCccccc
Q 012592 412 SDNHVCPICLTDPKDMAF-----GCG--HQTCCGCGQDLD----LCPICRSF 452 (460)
Q Consensus 412 ~e~~~CpICl~~~kdvv~-----~CG--H~fC~~Ci~~l~----~CPiCR~~ 452 (460)
.....||||-..+.-.++ .=| +..|.-|...|. .||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 345799999998876333 134 457889988773 79999775
No 138
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.73 E-value=42 Score=26.26 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=22.4
Q ss_pred CCCCCcccccccCCCcceeCC-CCccchhhhhc
Q 012592 411 TSDNHVCPICLTDPKDMAFGC-GHQTCCGCGQD 442 (460)
Q Consensus 411 l~e~~~CpICl~~~kdvv~~C-GH~fC~~Ci~~ 442 (460)
.++..-|.||.+-.+---+.| |-.||..|-..
T Consensus 5 ~ee~pWC~ICneDAtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNEDATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSCCCEEETTTTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCCCeEEecCCCCceehHHHHHH
Confidence 345578999997533223488 78899999864
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.69 E-value=44 Score=28.61 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=21.3
Q ss_pred CcccccccCCCcc---ee--CCCCccchhhhhc
Q 012592 415 HVCPICLTDPKDM---AF--GCGHQTCCGCGQD 442 (460)
Q Consensus 415 ~~CpICl~~~kdv---v~--~CGH~fC~~Ci~~ 442 (460)
..|.+|...|.-. -- .||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 5799998877642 11 8999999999753
No 140
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=20.50 E-value=1e+02 Score=24.76 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=28.7
Q ss_pred CCCCCcccccccCC---Cc-cee--CCCCccchhhhhc------CCCCCccccccc
Q 012592 411 TSDNHVCPICLTDP---KD-MAF--GCGHQTCCGCGQD------LDLCPICRSFIQ 454 (460)
Q Consensus 411 l~e~~~CpICl~~~---kd-vv~--~CGH~fC~~Ci~~------l~~CPiCR~~I~ 454 (460)
..++..|.||.... .+ +++ .|.-.|-..|+.. -+.||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 45668999999764 12 555 6765555567642 258999976543
Done!