BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012593
         (460 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
           Trichoderma Reesei
 pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
           Trichoderma Reesei
          Length = 714

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 132 PGGPSSIF-----AIGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPE 173
           PGGPS +F          A+  Q+    V   + T PS+AP TPP +
Sbjct: 605 PGGPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQ 651


>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
           Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
           Resolution.
 pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
           Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
           Resolution
          Length = 713

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 132 PGGPSSIF-----AIGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPE 173
           PGGPS +F          A+  Q+    V   + T PS+AP TPP +
Sbjct: 604 PGGPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQ 650


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,776,797
Number of Sequences: 62578
Number of extensions: 553031
Number of successful extensions: 783
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 47
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)