BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012593
         (460 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660 OS=Arabidopsis thaliana
           GN=At1g76660 PE=1 SV=1
          Length = 431

 Score =  182 bits (463), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 133/210 (63%), Gaps = 16/210 (7%)

Query: 39  QKRRWGGCWSISWCFGFQKHRKRIGHAVLVPEP---TASRSNASE---AVNSTQAAAISL 92
           Q++RWGGC  +  CF  QK  KRI  A  +PE    +AS+ N +     +N+  A  I+L
Sbjct: 7   QRKRWGGCLGVFSCFKSQKGGKRIVPASRIPEGGNVSASQPNGAHQAGVLNNQAAGGINL 66

Query: 93  PFVAPPSSPASFLQSEPPSATQSPAGLVSLNSISGNMYSPGGPSS-IFAIGPYAHETQLV 151
             +APPSSPASF  S  PS TQSP   +SL +      SPGGPSS ++A GPYAHETQLV
Sbjct: 67  SLLAPPSSPASFTNSALPSTTQSPNCYLSLAA-----NSPGGPSSSMYATGPYAHETQLV 121

Query: 152 SPPVFSTFTTEPSTAPFTPPPESVHLTTPSSPEVPFAQLLDPSLRFGEQGQKFPFSYYEF 211
           SPPVFSTFTTEPSTAPFTPPPE   LT PSSP+VP+A+ L  S+     G+     Y + 
Sbjct: 122 SPPVFSTFTTEPSTAPFTPPPELARLTAPSSPDVPYARFLTSSMDLKNSGKGH---YNDL 178

Query: 212 Q-SYHLHPGSPVGNLISPSSGISGSGTSSP 240
           Q +Y L+PGSP   L SP S  SG G  SP
Sbjct: 179 QATYSLYPGSPASALRSPISRASGDGLLSP 208


>sp|Q04980|LTI65_ARATH Low-temperature-induced 65 kDa protein OS=Arabidopsis thaliana
           GN=LTI65 PE=2 SV=2
          Length = 619

 Score = 32.7 bits (73), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 340 EKKPTTLAEAVSESLQNGTTVEKEESSGEAENVHHSCAGEAANDEPLKTPVDVEEAPRHQ 399
           E+K  T    +SE L+ G   +K  S   AE +H    GE       +  V VE+ P  Q
Sbjct: 480 EEKGVTAKNYISEKLKPGEE-DKALSEMIAEKLHFGGGGEKKTTATKEVEVTVEKIPSDQ 538

Query: 400 KQQSITLGSTKEFNFDSADGDSHEPTIASDWWANEKVVGKDSGAIKNW 447
                            A+G  H   +A +    E +VGK  GA+ +W
Sbjct: 539 ----------------IAEGKGHGEAVAEEGKGGEGMVGKVKGAVTSW 570


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.128    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,314,894
Number of Sequences: 539616
Number of extensions: 8740431
Number of successful extensions: 23010
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 21674
Number of HSP's gapped (non-prelim): 1356
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)