Query 012593
Match_columns 460
No_of_seqs 40 out of 42
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 04:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15336 Auts2: Autism suscept 43.6 28 0.0006 34.4 3.7 33 138-173 51-84 (212)
2 PF01863 DUF45: Protein of unk 20.0 27 0.00059 31.2 -0.7 11 38-49 136-146 (205)
3 PRK10984 DNA-binding transcrip 14.2 57 0.0012 30.1 -0.1 11 139-149 17-27 (127)
4 KOG4226 Adaptor protein NCK/Do 14.0 89 0.0019 32.8 1.2 44 399-442 195-240 (379)
5 PF07417 Crl: Transcriptional 13.7 60 0.0013 29.9 -0.1 10 140-149 16-25 (125)
6 KOG2883 NIPSNAP1 protein [Func 13.7 68 0.0015 32.4 0.3 15 208-222 153-167 (253)
7 TIGR00187 ribE riboflavin synt 9.7 1.5E+02 0.0033 28.5 1.2 45 294-343 94-138 (200)
8 COG1451 Predicted metal-depend 9.0 1.1E+02 0.0024 29.6 0.0 12 38-49 147-158 (223)
9 KOG0905 Phosphoinositide 3-kin 8.9 2E+03 0.043 27.6 9.7 27 217-243 176-203 (1639)
10 TIGR01358 DAHP_synth_II 3-deox 8.9 1.3E+02 0.0027 32.8 0.3 19 323-341 384-402 (443)
No 1
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=43.58 E-value=28 Score=34.42 Aligned_cols=33 Identities=39% Similarity=0.803 Sum_probs=25.5
Q ss_pred eeeeccCCCCccccCCCccccc-ccCCCCCCCCCCCC
Q 012593 138 IFAIGPYAHETQLVSPPVFSTF-TTEPSTAPFTPPPE 173 (460)
Q Consensus 138 iFAiGPYAhEtQLVSPPVFStf-TTEPSTAPfTPPPE 173 (460)
+|+=-+|.|+ |..| .||+. ++-|+++||.|+|-
T Consensus 51 ~f~g~~~phd--LarP-Lfs~tG~~hPs~~Pfgp~ph 84 (212)
T PF15336_consen 51 VFGGLHYPHD--LARP-LFSATGAAHPSANPFGPSPH 84 (212)
T ss_pred ccCCCCCccc--cCcc-ccCCCCCCCCCCCCCCCCCC
Confidence 6666678887 4444 88776 89999999999883
No 2
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=19.99 E-value=27 Score=31.21 Aligned_cols=11 Identities=55% Similarity=1.220 Sum_probs=9.1
Q ss_pred hhcccccccccc
Q 012593 38 SQKRRWGGCWSI 49 (460)
Q Consensus 38 ~~k~RWg~c~s~ 49 (460)
..|+|||+| +.
T Consensus 136 ~~ksrWGsc-~~ 146 (205)
T PF01863_consen 136 DMKSRWGSC-SS 146 (205)
T ss_pred ehhhccccC-CC
Confidence 589999999 54
No 3
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=14.15 E-value=57 Score=30.10 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=6.9
Q ss_pred eeeccCCCCcc
Q 012593 139 FAIGPYAHETQ 149 (460)
Q Consensus 139 FAiGPYAhEtQ 149 (460)
=|||||-+|.|
T Consensus 17 ~alGPYlRE~q 27 (127)
T PRK10984 17 TALGPYLREGQ 27 (127)
T ss_pred HHhCchhchhc
Confidence 35666666665
No 4
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=13.98 E-value=89 Score=32.75 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=37.3
Q ss_pred ccccccccccccccccCCCC--CCCCCCCccccccccceecccCCC
Q 012593 399 QKQQSITLGSTKEFNFDSAD--GDSHEPTIASDWWANEKVVGKDSG 442 (460)
Q Consensus 399 ~K~~sitlgs~KEFnFdN~~--~~s~~p~i~sdWWaNekVagke~~ 442 (460)
+-+-+++-.+..|.+|.--+ +.+++|..-.|||--.+.-|..+-
T Consensus 195 vaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGL 240 (379)
T KOG4226|consen 195 VALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGL 240 (379)
T ss_pred EEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccce
Confidence 44678888888999999999 999999999999998888777554
No 5
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=13.68 E-value=60 Score=29.94 Aligned_cols=10 Identities=60% Similarity=1.059 Sum_probs=5.8
Q ss_pred eeccCCCCcc
Q 012593 140 AIGPYAHETQ 149 (460)
Q Consensus 140 AiGPYAhEtQ 149 (460)
|||||-+|-|
T Consensus 16 alGPYlRE~q 25 (125)
T PF07417_consen 16 ALGPYLREGQ 25 (125)
T ss_dssp TT-TTB-GGG
T ss_pred hhCchhcccc
Confidence 6777777766
No 6
>KOG2883 consensus NIPSNAP1 protein [Function unknown]
Probab=13.66 E-value=68 Score=32.44 Aligned_cols=15 Identities=47% Similarity=1.021 Sum_probs=13.4
Q ss_pred cccccccccCCCCCC
Q 012593 208 YYEFQSYHLHPGSPV 222 (460)
Q Consensus 208 ~ye~qsYqlyPGSP~ 222 (460)
-|||.+|||-||-++
T Consensus 153 vYELrsy~lkPGtmi 167 (253)
T KOG2883|consen 153 VYELRSYQLKPGTMI 167 (253)
T ss_pred ceeeeeEecCCCchh
Confidence 389999999999876
No 7
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=9.74 E-value=1.5e+02 Score=28.49 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCCccccccceeccccCCCCCCCcccccccceeeeeechhhhhhhhccCc
Q 012593 294 RNGFFQNRQISEVALRPHSENGLRKDQIVDHRVSFELTTEDVVRCVEKKP 343 (460)
Q Consensus 294 ~~g~~l~~qis~vas~~~s~~~~~~~~~~~HrVSFeLt~edv~rcle~K~ 343 (460)
.+|+++.+||..++.+..-+.... .+++.|++..++.+|.+-.|-
T Consensus 94 lgGH~V~GHVd~~~~i~~~~~~~~-----~~~~~~~~~p~~~~~yiv~KG 138 (200)
T TIGR00187 94 IGGHFVSGHIDTTAEIAKIETSEN-----NVQFWFKLQDSELMKYIVEKG 138 (200)
T ss_pred cCCeeEeEEccEEEEEEEEEEcCC-----cEEEEEEECCHHHHhccccCC
Confidence 678999999999998877665543 678889985567788766664
No 8
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=8.99 E-value=1.1e+02 Score=29.58 Aligned_cols=12 Identities=50% Similarity=1.143 Sum_probs=9.9
Q ss_pred hhcccccccccc
Q 012593 38 SQKRRWGGCWSI 49 (460)
Q Consensus 38 ~~k~RWg~c~s~ 49 (460)
..|+|||||-..
T Consensus 147 ~~k~~WGScs~~ 158 (223)
T COG1451 147 NMKRRWGSCSKA 158 (223)
T ss_pred eccceeeeecCC
Confidence 689999999743
No 9
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=8.91 E-value=2e+03 Score=27.62 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=19.0
Q ss_pred CCCCCCCCc-cCCCCccCCCCCCCCCCC
Q 012593 217 HPGSPVGNL-ISPSSGISGSGTSSPFPD 243 (460)
Q Consensus 217 yPGSP~g~L-ISP~S~~s~sGtSSPfPd 243 (460)
+|+||.... +|+.|-.++.....|||.
T Consensus 176 ~~~Sp~sp~h~sqps~~s~~s~~a~~~~ 203 (1639)
T KOG0905|consen 176 RPQSPPSPIHHSQPSDSSTFSHVAPFPA 203 (1639)
T ss_pred CCCCCCCCCCCCCCCCCccccccCCchh
Confidence 455554444 888887787788888875
No 10
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=8.85 E-value=1.3e+02 Score=32.81 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=16.2
Q ss_pred cceeeeeechhhhhhhhcc
Q 012593 323 DHRVSFELTTEDVVRCVEK 341 (460)
Q Consensus 323 ~HrVSFeLt~edv~rcle~ 341 (460)
.=-|-+|||+|||-.|+.-
T Consensus 384 ~GGlHlE~Tg~dVTEC~Gg 402 (443)
T TIGR01358 384 PGGVHLELTGEDVTECLGG 402 (443)
T ss_pred CCeEEEEecCCCcceeCCC
Confidence 3368999999999999974
Done!