Query 012593
Match_columns 460
No_of_seqs 40 out of 42
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 12:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rpj_A Curlin genes transcript 12.5 47 0.0016 29.7 0.1 11 139-149 20-30 (134)
2 1i8d_A Riboflavin synthase; ri 10.1 99 0.0034 28.9 1.4 46 294-344 94-139 (213)
3 2dkz_A Hypothetical protein LO 10.1 79 0.0027 26.3 0.7 13 329-341 17-29 (84)
4 2lpe_A Kinase suppressor of RA 9.4 66 0.0022 29.1 -0.0 19 325-344 40-58 (149)
5 1kzl_A Riboflavin synthase; bi 8.8 1.2E+02 0.0041 28.2 1.5 46 294-344 94-139 (208)
6 3rzi_A Probable 3-deoxy-D-arab 7.8 84 0.0029 32.8 -0.0 18 324-341 406-423 (462)
7 3dwa_A SUBB, subtilase cytotox 7.5 1.2E+02 0.0043 26.8 0.9 20 43-62 100-119 (126)
8 3a35_A Lumazine protein, LUMP; 6.5 1.2E+02 0.004 27.8 0.2 44 294-343 93-136 (190)
9 3or1_C Sulfite reductase GAMA; 4.7 1.9E+02 0.0065 24.3 0.4 12 213-224 80-91 (105)
10 3ddy_A Lumazine protein, LUMP; 4.5 2.1E+02 0.0072 26.0 0.6 45 294-344 93-137 (186)
No 1
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=12.46 E-value=47 Score=29.69 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=8.4
Q ss_pred eeeccCCCCcc
Q 012593 139 FAIGPYAHETQ 149 (460)
Q Consensus 139 FAiGPYAhEtQ 149 (460)
=|||||-+|-|
T Consensus 20 ~alGPYlRE~q 30 (134)
T 3rpj_A 20 AQIGPYIREQQ 30 (134)
T ss_dssp HTTCTTBCGGG
T ss_pred HHhCchhchhh
Confidence 47888888876
No 2
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=10.08 E-value=99 Score=28.85 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=34.9
Q ss_pred CCCccccccceeccccCCCCCCCcccccccceeeeeechhhhhhhhccCcc
Q 012593 294 RNGFFQNRQISEVALRPHSENGLRKDQIVDHRVSFELTTEDVVRCVEKKPT 344 (460)
Q Consensus 294 ~~g~~l~~qis~vas~~~s~~~~~~~~~~~HrVSFeLt~edv~rcle~K~~ 344 (460)
.+|+++.+||..++.+..-..... .+++.|++..++++|.+-.|--
T Consensus 94 lgGH~VsGHVDg~g~i~~~~~~~~-----~~~~~~~~p~~~l~~yiv~KGs 139 (213)
T 1i8d_A 94 IGGHLMSGHIMTTAEVAKILTSEN-----NRQIWFKVQDSQLMKYILYKGF 139 (213)
T ss_dssp CSSCCBCCCCCEEEEEEEEEEETT-----EEEEEEEESCGGGGGGCCTTCE
T ss_pred ccCeeEEEEeeEEEEEEEEEEcCC-----eEEEEEEeCHHHhHhhceeCCe
Confidence 678999999999888876554443 4688899986558888888843
No 3
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.08 E-value=79 Score=26.28 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=11.4
Q ss_pred eechhhhhhhhcc
Q 012593 329 ELTTEDVVRCVEK 341 (460)
Q Consensus 329 eLt~edv~rcle~ 341 (460)
+||.+||++||.-
T Consensus 17 ~lSv~EVs~~Lr~ 29 (84)
T 2dkz_A 17 GLSIEEVSKSLRF 29 (84)
T ss_dssp SCCHHHHHHHGGG
T ss_pred hcCHHHHHHHHHH
Confidence 6899999999964
No 4
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=9.41 E-value=66 Score=29.08 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.5
Q ss_pred eeeeeechhhhhhhhccCcc
Q 012593 325 RVSFELTTEDVVRCVEKKPT 344 (460)
Q Consensus 325 rVSFeLt~edv~rcle~K~~ 344 (460)
-+|.|||-.++ ||||.|+.
T Consensus 40 a~S~~LtQqEI-RtlE~KLv 58 (149)
T 2lpe_A 40 SVSNDLTQQEI-RTLEAKLV 58 (149)
T ss_dssp CCSCHHHHHHH-HHHHHHHH
T ss_pred hhhhHHHHHHH-HHHHHHHH
Confidence 47899999986 99999984
No 5
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=8.75 E-value=1.2e+02 Score=28.18 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=34.8
Q ss_pred CCCccccccceeccccCCCCCCCcccccccceeeeeechhhhhhhhccCcc
Q 012593 294 RNGFFQNRQISEVALRPHSENGLRKDQIVDHRVSFELTTEDVVRCVEKKPT 344 (460)
Q Consensus 294 ~~g~~l~~qis~vas~~~s~~~~~~~~~~~HrVSFeLt~edv~rcle~K~~ 344 (460)
.+|.++.+||.-++.+..-..... .+++.|++..++++|.+..|--
T Consensus 94 lgGH~VsGHVDg~g~i~~~~~~~~-----~~~~~~~~~p~~l~~yiv~KGs 139 (208)
T 1kzl_A 94 MGGHFVQGHVDTVAEIVEKKQDGE-----AIDFTFRPRDPFVLKYIVYKGY 139 (208)
T ss_dssp SSSCCBCSCCCEEEEEEEEEEETT-----EEEEEEEESSGGGGGGCCTTCE
T ss_pred ccceEeccEEeeeeEEEEEEecCC-----cEEEEEEeCCHHHHhhhhhCCE
Confidence 578999999998888766554332 5688888845789998888853
No 6
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=7.84 E-value=84 Score=32.81 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.7
Q ss_pred ceeeeeechhhhhhhhcc
Q 012593 324 HRVSFELTTEDVVRCVEK 341 (460)
Q Consensus 324 HrVSFeLt~edv~rcle~ 341 (460)
=-|-+|||+|||-.|+--
T Consensus 406 GGvHlE~TG~dVTEC~GG 423 (462)
T 3rzi_A 406 GGIHVEITGENVTECLGG 423 (462)
T ss_dssp CEEEEEBCSSCCCCSBBT
T ss_pred CeEEEEecCCCccccCCC
Confidence 368999999999999954
No 7
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=7.46 E-value=1.2e+02 Score=26.79 Aligned_cols=20 Identities=20% Similarity=0.586 Sum_probs=14.9
Q ss_pred ccccccceecccccCCCcee
Q 012593 43 WGGCWSISWCFGFQKHRKRI 62 (460)
Q Consensus 43 Wg~c~s~~~CFgs~k~~kRI 62 (460)
-++|=|.-+|||++|...-+
T Consensus 100 istCss~~~C~GP~~~~~~~ 119 (126)
T 3dwa_A 100 LSTCTTSTECFGPDRKKNSL 119 (126)
T ss_dssp EEEBSSSSCBSSCCCCCCC-
T ss_pred EecccCCCeeeCCcccccch
Confidence 46799999999999654433
No 8
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=6.48 E-value=1.2e+02 Score=27.78 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=33.1
Q ss_pred CCCccccccceeccccCCCCCCCcccccccceeeeeechhhhhhhhccCc
Q 012593 294 RNGFFQNRQISEVALRPHSENGLRKDQIVDHRVSFELTTEDVVRCVEKKP 343 (460)
Q Consensus 294 ~~g~~l~~qis~vas~~~s~~~~~~~~~~~HrVSFeLt~edv~rcle~K~ 343 (460)
.+|.++.+||..++.+..-..... .+++.|++. ++++|.+..|-
T Consensus 93 lgGH~v~GHVdg~g~i~~~~~~~~-----~~~~~~~~p-~~~~~yi~~KG 136 (190)
T 3a35_A 93 LGKGALTGNIKGVATVDNITEEED-----RLKVYIKIP-KDLIENILSED 136 (190)
T ss_dssp CCSSCBCSCCCEEEEEEEEEEETT-----EEEEEEECC-TTSCSCCCTTS
T ss_pred cCCeeEEEEEeEEEEEEEEEEcCC-----eEEEEEEeC-HHHHhcCCcCC
Confidence 578999999999888776554442 567888886 67888887774
No 9
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=4.69 E-value=1.9e+02 Score=24.34 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=9.5
Q ss_pred ccccCCCCCCCC
Q 012593 213 SYHLHPGSPVGN 224 (460)
Q Consensus 213 sYqlyPGSP~g~ 224 (460)
=|+|||+.|+.|
T Consensus 80 Ly~LFP~gPakq 91 (105)
T 3or1_C 80 IYELFPSGPGKG 91 (105)
T ss_dssp HHHHCTTCTTTT
T ss_pred HHHHCCCCHHHH
Confidence 389999999754
No 10
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=4.46 E-value=2.1e+02 Score=25.99 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=28.8
Q ss_pred CCCccccccceeccccCCCCCCCcccccccceeeeeechhhhhhhhccCcc
Q 012593 294 RNGFFQNRQISEVALRPHSENGLRKDQIVDHRVSFELTTEDVVRCVEKKPT 344 (460)
Q Consensus 294 ~~g~~l~~qis~vas~~~s~~~~~~~~~~~HrVSFeLt~edv~rcle~K~~ 344 (460)
.+|+++.+||..++.+..-+.... .+++.|++. ++++|.+..|--
T Consensus 93 lgGH~vsGHVdg~g~i~~i~~~~~-----~~~~~i~~p-~~l~~~i~~KgS 137 (186)
T 3ddy_A 93 VGRGGLTGNIKGTALVAAIEENDA-----GFSVLIDIP-KGLAENLTVKDD 137 (186)
T ss_dssp ----CBCSCCCEEEEEEEEECCSS-----EEEEEEECC-TTTCSCCCTTCE
T ss_pred cCCeeEEEEEeEEEEEEEEEECCC-----eEEEEEEcC-HHHhhccccCcE
Confidence 678999999998888775544332 456777775 567777777743
Done!