Query 012593
Match_columns 460
No_of_seqs 40 out of 42
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 12:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012593.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012593hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fug13 d.15.13.1 (1:250-333) 10.2 45 0.0033 25.0 1.2 19 265-285 62-80 (84)
2 d1brwa2 c.27.1.1 (A:71-330) Py 8.2 42 0.0031 28.8 0.3 18 325-342 59-76 (260)
3 d2b7oa1 c.1.10.8 (A:1-462) Pro 7.8 44 0.0032 32.5 0.3 18 324-341 406-423 (462)
4 d1vqya1 d.58.4.13 (A:1-104) Hy 5.9 62 0.0045 23.2 0.2 11 209-219 3-13 (104)
5 d1uoua2 c.27.1.1 (A:101-373) T 5.7 67 0.0049 27.7 0.3 19 324-342 62-80 (273)
6 d2v4jc1 d.203.1.1 (C:3-105) Ds 5.2 29 0.0021 27.2 -2.2 11 214-224 79-89 (103)
7 d1b5qa1 c.3.1.2 (A:5-293,A:406 5.2 85 0.0062 22.3 0.6 15 329-343 332-346 (347)
8 d1vqsa_ d.58.4.13 (A:) Hypothe 4.6 85 0.0062 23.0 0.2 12 209-220 9-20 (110)
9 d1gkga2 g.18.1.1 (A:1023-1092) 4.6 41 0.003 23.5 -1.6 23 328-350 42-66 (70)
10 d1i8da2 b.43.4.3 (A:94-206) Ri 4.1 1.6E+02 0.011 22.5 1.4 43 295-342 2-44 (113)
No 1
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=10.22 E-value=45 Score=25.00 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.0
Q ss_pred cCCCccchhccccccCCCccc
Q 012593 265 LNLDKLSIREWGSRQGSGTLT 285 (460)
Q Consensus 265 L~~~~~~~~k~gSr~gsg~lt 285 (460)
|++|.|. ++|+.+|||.+.
T Consensus 62 ld~e~l~--~~G~~lGsg~ii 80 (84)
T d2fug13 62 MSYEHLQ--AKGSMLGTGGVI 80 (84)
T ss_dssp CSTTTTT--TTTSCCSTTEEE
T ss_pred CChhhHH--HcCccCCceEEE
Confidence 6777665 689999999764
No 2
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.18 E-value=42 Score=28.83 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=16.6
Q ss_pred eeeeeechhhhhhhhccC
Q 012593 325 RVSFELTTEDVVRCVEKK 342 (460)
Q Consensus 325 rVSFeLt~edv~rcle~K 342 (460)
-|.++++.|+|.|||++-
T Consensus 59 Gv~i~~~~e~~~~~l~e~ 76 (260)
T d1brwa2 59 GFHVEISKDEFIRLVNEN 76 (260)
T ss_dssp TCCCCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 599999999999999976
No 3
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.77 E-value=44 Score=32.47 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=11.8
Q ss_pred ceeeeeechhhhhhhhcc
Q 012593 324 HRVSFELTTEDVVRCVEK 341 (460)
Q Consensus 324 HrVSFeLt~edv~rcle~ 341 (460)
=-|-+|||+|||-.|+.-
T Consensus 406 GGvHlE~TG~dVTEC~Gg 423 (462)
T d2b7oa1 406 GGIHVEITGENVTECLGG 423 (462)
T ss_dssp CEEEEEBCSSCCC-----
T ss_pred CeEEEEecCCCcceeCCC
Confidence 368999999999999874
No 4
>d1vqya1 d.58.4.13 (A:1-104) Hypothetical protein Atu5224 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.91 E-value=62 Score=23.24 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=5.4
Q ss_pred ccccccccCCC
Q 012593 209 YEFQSYHLHPG 219 (460)
Q Consensus 209 ye~qsYqlyPG 219 (460)
|||..|+|.||
T Consensus 3 yElRtY~l~pg 13 (104)
T d1vqya1 3 VEERIYRIRGG 13 (104)
T ss_dssp EEEEEEEECTT
T ss_pred EEEEEEEecCC
Confidence 44455555544
No 5
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.71 E-value=67 Score=27.68 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=17.3
Q ss_pred ceeeeeechhhhhhhhccC
Q 012593 324 HRVSFELTTEDVVRCVEKK 342 (460)
Q Consensus 324 HrVSFeLt~edv~rcle~K 342 (460)
+-|.++++.|++.+||++.
T Consensus 62 ~Gv~i~~~~e~~~~~l~~~ 80 (273)
T d1uoua2 62 PGFNVIQSPEQMQVLLDQA 80 (273)
T ss_dssp TTCCCCCCHHHHHHHHHHH
T ss_pred cCCccCCCHHHHHHHHHhc
Confidence 4799999999999999986
No 6
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=5.24 E-value=29 Score=27.24 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=8.5
Q ss_pred cccCCCCCCCC
Q 012593 214 YHLHPGSPVGN 224 (460)
Q Consensus 214 YqlyPGSP~g~ 224 (460)
|+|||++|..+
T Consensus 79 ~~LFp~~Pak~ 89 (103)
T d2v4jc1 79 YELFPSGPGKG 89 (103)
T ss_dssp HHHSTTHHHHT
T ss_pred HHHcCCCHHHH
Confidence 89999988643
No 7
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=5.19 E-value=85 Score=22.27 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=11.9
Q ss_pred eechhhhhhhhccCc
Q 012593 329 ELTTEDVVRCVEKKP 343 (460)
Q Consensus 329 eLt~edv~rcle~K~ 343 (460)
...++.+++||++|.
T Consensus 332 ~~aA~~l~~~~~~~~ 346 (347)
T d1b5qa1 332 IDSAEILINCAQKKM 346 (347)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 456788999999985
No 8
>d1vqsa_ d.58.4.13 (A:) Hypothetical protein Atu4242 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.62 E-value=85 Score=23.02 Aligned_cols=12 Identities=42% Similarity=0.977 Sum_probs=8.7
Q ss_pred ccccccccCCCC
Q 012593 209 YEFQSYHLHPGS 220 (460)
Q Consensus 209 ye~qsYqlyPGS 220 (460)
|||..|+|.||.
T Consensus 9 yElRtY~l~pg~ 20 (110)
T d1vqsa_ 9 YEIRTYRLKNGA 20 (110)
T ss_dssp EEEEEEEESTTC
T ss_pred EEEEEEEecCCC
Confidence 677777777764
No 9
>d1gkga2 g.18.1.1 (A:1023-1092) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=41 Score=23.54 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=16.5
Q ss_pred eeechhhhhhhhccC--ccchhhhh
Q 012593 328 FELTTEDVVRCVEKK--PTTLAEAV 350 (460)
Q Consensus 328 FeLt~edv~rcle~K--~~~~~~~~ 350 (460)
|+|.++.+++|..+. ...|....
T Consensus 42 y~L~G~~~~~C~~~~~~~G~Ws~~~ 66 (70)
T d1gkga2 42 FELVGEPSIYCTSNDDQVGIWSGPA 66 (70)
T ss_dssp CCEESCCEEECCCSSSSSCCCSCCC
T ss_pred EEEeCCcEEEEEeCCCcccEECCCC
Confidence 899999999998753 34454433
No 10
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=4.09 E-value=1.6e+02 Score=22.54 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=27.2
Q ss_pred CCccccccceeccccCCCCCCCcccccccceeeeeechhhhhhhhccC
Q 012593 295 NGFFQNRQISEVALRPHSENGLRKDQIVDHRVSFELTTEDVVRCVEKK 342 (460)
Q Consensus 295 ~g~~l~~qis~vas~~~s~~~~~~~~~~~HrVSFeLt~edv~rcle~K 342 (460)
+|.++.+||..++.+..-..... ..++.|++...+..+.+..|
T Consensus 2 gGH~vsGhV~~~G~I~~i~~~~~-----~~~~~i~~~~~~~~~~i~~g 44 (113)
T d1i8da2 2 GGHLMSGHIMTTAEVAKILTSEN-----NRQIWFKVQDSQLMKYILYK 44 (113)
T ss_dssp SSCCBCCCCCEEEEEEEEEEETT-----EEEEEEEESCGGGGGGCCTT
T ss_pred CceeeeeEeCEEEEEEEEEEcCC-----ceEEEEEeehHHHhhhhhhh
Confidence 68899999888777654433221 23555666656666666655
Done!