BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012594
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 237/485 (48%), Gaps = 44/485 (9%)
Query: 2 DREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASM-PQKAEQSSL 60
+R+PHV++IP+P QGH PL KL+ + G +TFV+TE+ H ++ S P+ + +
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 61 ITMVSIPDGLESHEAD---RRDLHKVRQSMLT--VMPGCLRNLIEKVNKSNDCEKISCVI 115
SIPDGL E D +D+ + QS+ + P C L+ ++N S + ++C++
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYC--ELLTRLNHSTNVPPVTCLV 123
Query: 116 ADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGNAMTDEPILLS 175
+D + + ++ AE+ + + SL V+H VE G++ DE L +
Sbjct: 124 SDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGII-----PFKDESYLTN 178
Query: 176 ---EGTLPW--------KKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYE 224
E + W K + + P+ L F VA + IL N+F E
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFI--EVADRVNKDTTILLNTFNE 236
Query: 225 LDPPACD----LIPNILTIGPLLGR-------DHLEHSAVNFWPEDSTCLGWLDKQAVGS 273
L+ + IP+I IGPL L+ N W ED+ CL WL+ + GS
Sbjct: 237 LESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGS 296
Query: 274 VIYVAFGSVAVXXXXXXXXXXXXXXXXXXPFLWVVRPDFMNKSHAKLPDGFVERVSDRGK 333
V+YV FGS V FLW++RPD + F ++DRG
Sbjct: 297 VVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGL 356
Query: 334 LVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKI 393
+ W PQ+KVL HPS+ FL+HCGWNST E + GVP LCWP+FADQ + +I + W+I
Sbjct: 357 IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEI 416
Query: 394 GLRFFPDENGIITRQEIQRQVKALL-NDGG--IKANALKMKQMARKSLVEGGSSFRNFES 450
G+ D N + R+E+ + + ++ D G +K A+++K+ A ++ GG S+ N
Sbjct: 417 GMEI--DTN--VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNK 472
Query: 451 FVSQL 455
+ +
Sbjct: 473 VIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 219/477 (45%), Gaps = 56/477 (11%)
Query: 3 REPHVLVIPFPAQGHAGPLMKLSTKIAE-HGIKVTFVSTEHMHAKITASMPQKAEQSSLI 61
+ PHV +IP P GH PL++ + ++ HG+ VTFV I P Q +++
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV--------IAGEGPPSKAQRTVL 56
Query: 62 TMVSIPDGLESHEADRRDLHKVRQSM-------LTVMPGC--LRNLIEKVNKSNDCEKIS 112
S+P + S DL + S LTV LR + + + +
Sbjct: 57 D--SLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLP--T 112
Query: 113 CVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGNAMTDEPI 172
++ DL A +VA + + P L+ LH PKL E + +T EP+
Sbjct: 113 ALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET--VSCEFRELT-EPL 169
Query: 173 LLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDL 232
+L G +P K++ P+Q + + K + IL N+F+EL+P A
Sbjct: 170 MLP-GCVPVAGKDF--LDPAQDRKDDAYKWLLHNT-KRYKEAEGILVNTFFELEPNAIKA 225
Query: 233 I-------PNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVX 285
+ P + +GPL+ E E+S CL WLD Q +GSV+YV+FGS
Sbjct: 226 LQEPGLDKPPVYPVGPLVNIGKQEAKQT----EESECLKWLDNQPLGSVLYVSFGSGGTL 281
Query: 286 XXXXXXXXXXXXXXXXXPFLWVVR-PDFMNKS-----HAK------LPDGFVERVSDRGK 333
FLWV+R P + S H++ LP GF+ER RG
Sbjct: 282 TCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGF 341
Query: 334 LVE-WAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK 392
++ WAPQ +VL HPS FL+HCGWNSTLE + G+P + WP +A+Q N + + +
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR 401
Query: 393 IGLRFFPDENGIITRQEIQRQVKALL---NDGGIKANALKMKQMARKSLVEGGSSFR 446
LR ++G++ R+E+ R VK L+ G++ ++K+ A + L + G+S +
Sbjct: 402 AALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTK 458
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/463 (26%), Positives = 212/463 (45%), Gaps = 38/463 (8%)
Query: 5 PHVLVIPFPAQGHAGPLMKLSTKIAE---HGIKVTFVSTEHMHAKI--TASMPQKAEQSS 59
PHV V+ FP HA PL+ + ++A H + +F ST +A I + + S
Sbjct: 8 PHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAV-FSFFSTSQSNASIFHDSMHTMQCNIKS 66
Query: 60 LITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRN-LIEKVNKSNDCEKISCVIADL 118
+P+G + D+ ++ P R ++ V ++ +SC++AD
Sbjct: 67 YDISDGVPEGYVFAGRPQEDIELFTRAA----PESFRQGMVMAVAETG--RPVSCLVADA 120
Query: 119 TVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGNAMTDEPILLSEG- 177
+ +A ++A +MG+A P SL+ ++ ++ E + S DE + G
Sbjct: 121 FIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREK-IGVSGIQGREDELLNFIPGM 179
Query: 178 -TLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPAC-DL--- 232
+ ++ + G F ++ LF + Q L + + NSF ELD DL
Sbjct: 180 SKVRFRDLQEGIVFG---NLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSK 236
Query: 233 IPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVXXXXXXXX 292
+ L IGP + + V P + CL WL ++ SV+Y++FG+V
Sbjct: 237 LKTYLNIGPF---NLITPPPV--VPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVA 291
Query: 293 XXXXXXXXXXPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACF 352
PF+W +R +K+ LP+GF+E+ G +V WAPQ +VL H +V F
Sbjct: 292 LSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAF 347
Query: 353 LSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQR 412
++HCGWNS E ++ GVP +C P+F DQ N + D +IG+R E G+ T+ +
Sbjct: 348 VTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMS 404
Query: 413 QVKALLND---GGIKANALKMKQMARKSLVEGGSSFRNFESFV 452
+L+ ++ N +++ A +++ GSS NF + V
Sbjct: 405 CFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/468 (27%), Positives = 205/468 (43%), Gaps = 54/468 (11%)
Query: 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVS 65
HV V+ FP HA PL+ L KIA KVTF T + E I +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTL-FSRSNEFLPNIKYYN 73
Query: 66 IPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALE 125
+ DGL + + + M +++I++ + + I+C++ D + +
Sbjct: 74 VHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEA-VAETGKNITCLVTDAFFWFGAD 132
Query: 126 VAEQMGIARAAVIPYAPASLALVLHAPKLVE-AGLLDSNGNAMTDE----PIL----LSE 176
+AE+M + P SL ++ + E G + + D P L L E
Sbjct: 133 LAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPE 192
Query: 177 GTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPN- 235
G + K+ F + H L +AVA NSF + P LI N
Sbjct: 193 GVI----KDIDVPFATMLHKMGLELPRANAVA----------INSFATIHP----LIENE 234
Query: 236 -------ILTIGPL-LGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVXXX 287
+L +GP L + S ++ CL WLD+ SV+Y++FGSV
Sbjct: 235 LNSKFKLLLNVGPFNLTTPQRKVS------DEHGCLEWLDQHENSSVVYISFGSVVTPPP 288
Query: 288 XXXXXXXXXXXXXXXPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHP 347
PF+W R D KLP GF+ER +GK+V WAPQ ++L H
Sbjct: 289 HELTALAESLEECGFPFIWSFRGD----PKEKLPKGFLERTKTKGKIVAWAPQVEILKHS 344
Query: 348 SVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITR 407
SV FL+H GWNS LE + GVP + P+F DQ N +IG+ +NG++T+
Sbjct: 345 SVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV---DNGVLTK 401
Query: 408 QEIQRQVKALLND--GGI-KANALKMKQMARKSLVEGGSSFRNFESFV 452
+ I++ ++ ++ GGI + +K+K+ A K++ + G+S +F + +
Sbjct: 402 ESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 130/258 (50%), Gaps = 22/258 (8%)
Query: 203 ACSAVAQNLKISNWILCNSFYELDPPACDL-------IPNILTIGPLLGRDHLEHSAVNF 255
A +A+ + + I+ N+F +L+ + D IP I +GPLL + ++
Sbjct: 201 AYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQ 260
Query: 256 WPEDSTCLGWLDKQAVGSVIYVAFGSVAVXXX-XXXXXXXXXXXXXXXPFLWVVRPDFMN 314
D L WLD+Q SV+++ FGS+ V FLW N
Sbjct: 261 AQHD-LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------SN 313
Query: 315 KSHAKL-PDGFVE--RVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPF 371
+ K+ P+GF+E + +G + WAPQ +VL H ++ F+SHCGWNS LE + GVP
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 372 LCWPYFADQYQNRNYIFDAWKIGLRFFPDE---NGIITRQEIQRQVKALLN-DGGIKANA 427
L WP +A+Q N + W +GL D + ++ +EI++ +K L++ D +
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 428 LKMKQMARKSLVEGGSSF 445
+MK+M+R ++V+GGSS
Sbjct: 434 QEMKEMSRNAVVDGGSSL 451
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 130/258 (50%), Gaps = 22/258 (8%)
Query: 203 ACSAVAQNLKISNWILCNSFYELDPPACDL-------IPNILTIGPLLGRDHLEHSAVNF 255
A +A+ + + I+ N+F +L+ + D IP I +GPLL + ++
Sbjct: 201 AYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQ 260
Query: 256 WPEDSTCLGWLDKQAVGSVIYVAFGSVAVXXX-XXXXXXXXXXXXXXXPFLWVVRPDFMN 314
D L WLD+Q SV+++ FGS+ V FLW N
Sbjct: 261 AQHD-LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------SN 313
Query: 315 KSHAKL-PDGFVE--RVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPF 371
+ K+ P+GF+E + +G + WAPQ +VL H ++ F+SHCGWNS LE + GVP
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 372 LCWPYFADQYQNRNYIFDAWKIGLRFFPDE---NGIITRQEIQRQVKALLN-DGGIKANA 427
L WP +A+Q N + W +GL D + ++ +EI++ +K L++ D +
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 428 LKMKQMARKSLVEGGSSF 445
+MK+M+R ++V+GGSS
Sbjct: 434 QEMKEMSRNAVVDGGSSL 451
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 333 KLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK 392
+L +W PQ +LGHP F++H G N E + G+P + P FADQ N I
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN---IAHXKA 127
Query: 393 IGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQM 433
G D N + ++ +K ++ND K N K+ ++
Sbjct: 128 RGAAVRVDFN-TXSSTDLLNALKRVINDPSYKENVXKLSRI 167
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 336 EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGL 395
+W PQ +L S F++H G ST+E LS VP + P A+Q N I ++GL
Sbjct: 311 QWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV---ELGL 365
Query: 396 -RFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQ 432
R P + +T ++++ V A+ +D G+ ++Q
Sbjct: 366 GRHIPRDQ--VTAEKLREAVLAVASDPGVAERLAAVRQ 401
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 333 KLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK 392
++VEW P +L + + H G + L L+ GVP P+ + Q NR+ +
Sbjct: 291 RVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRD-VLTGLG 347
Query: 393 IGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQ 432
IG F E G + ++ +R LL+D G++ AL+++Q
Sbjct: 348 IG---FDAEAGSLGAEQCRR----LLDDAGLREAALRVRQ 380
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 333 KLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK 392
++VEW P +L + + H G + L L+ GVP P+ + Q NR+ +
Sbjct: 291 RVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRD-VLTGLG 347
Query: 393 IGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQ 432
IG F E G + ++ +R LL+D G++ AL+++Q
Sbjct: 348 IG---FDAEAGSLGAEQCRR----LLDDAGLREAALRVRQ 380
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 333 KLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQY 381
+L W PQ +L P V + H G +TL L GVP L +P+ D +
Sbjct: 295 RLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 330 DRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFD 389
D ++ +W PQ +L + F++H G + EGL+ P + P DQ+ N + +
Sbjct: 283 DNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNAD-MLQ 339
Query: 390 AWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGS 443
+ + +E T ++ AL++D + A +++++ + EGG+
Sbjct: 340 GLGVARKLATEE---ATADLLRETALALVDDPEV---ARRLRRIQAEMAQEGGT 387
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 336 EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQ 380
+W P VL H + AC L+H + LE + GVP + P+FA +
Sbjct: 287 QWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLIT 62
R+ H+L GH P + L +++A G ++T+V+T ++ A+ + S
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFD 62
Query: 63 MVSIPDGLESHEADRRDLHKV 83
+P+ ++ +A+ + LH V
Sbjct: 63 TFHVPEVVKQEDAETQ-LHLV 82
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 335 VEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWP 375
V W P + V P+ + H G STL GLS GVP L P
Sbjct: 268 VGWTPLDVV--APTCDLLVHHAGGVSTLTGLSAGVPQLLIP 306
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
Length = 359
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 59 SLITMVSIPDGLESHEADRRDLHKVRQSMLTVMP 92
SL +V + D +ESH D RD K+R S+ P
Sbjct: 48 SLFEIVRLNDLMESHIGDIRDFEKLRSSIAEFKP 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,171,932
Number of Sequences: 62578
Number of extensions: 516387
Number of successful extensions: 1018
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 21
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)