Query 012594
Match_columns 460
No_of_seqs 129 out of 1271
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 4.3E-66 9.2E-71 498.2 45.4 436 1-456 3-448 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.6E-63 3.6E-68 478.5 44.3 433 4-457 7-450 (451)
3 PLN02555 limonoid glucosyltran 100.0 2.2E-63 4.9E-68 479.1 45.1 447 4-458 7-470 (480)
4 PLN02207 UDP-glycosyltransfera 100.0 4.8E-63 1E-67 474.6 44.3 446 3-460 2-468 (468)
5 PLN02173 UDP-glucosyl transfer 100.0 7.2E-63 1.6E-67 471.7 42.9 427 1-456 1-447 (449)
6 PLN02152 indole-3-acetate beta 100.0 1E-62 2.2E-67 471.4 43.4 431 4-455 3-454 (455)
7 PLN02210 UDP-glucosyl transfer 100.0 1.4E-62 3E-67 474.1 42.7 430 3-456 7-454 (456)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.4E-62 7.4E-67 472.7 42.0 444 4-459 9-473 (477)
9 PLN02554 UDP-glycosyltransfera 100.0 5.8E-62 1.2E-66 474.9 42.0 439 5-458 3-479 (481)
10 PLN02448 UDP-glycosyltransfera 100.0 3.3E-61 7.2E-66 468.0 43.7 432 3-457 9-457 (459)
11 PLN02992 coniferyl-alcohol glu 100.0 3.7E-61 8.1E-66 462.3 42.0 428 3-457 4-469 (481)
12 PLN00164 glucosyltransferase; 100.0 6.6E-61 1.4E-65 465.4 41.9 438 4-459 3-475 (480)
13 PLN02670 transferase, transfer 100.0 1.2E-60 2.7E-65 458.4 40.8 438 1-459 3-467 (472)
14 PLN03007 UDP-glucosyltransfera 100.0 3E-60 6.5E-65 463.6 43.7 438 4-459 5-482 (482)
15 PLN03004 UDP-glycosyltransfera 100.0 2.4E-60 5.2E-65 454.6 39.0 430 4-446 3-450 (451)
16 PLN02534 UDP-glycosyltransfera 100.0 6.6E-60 1.4E-64 455.5 42.0 443 1-458 5-487 (491)
17 PLN02208 glycosyltransferase f 100.0 3.9E-60 8.4E-65 454.1 39.8 416 1-458 1-440 (442)
18 PLN02167 UDP-glycosyltransfera 100.0 4.8E-60 1E-64 460.7 40.6 447 3-458 2-473 (475)
19 PLN03015 UDP-glucosyl transfer 100.0 1.8E-59 4E-64 447.8 42.3 434 4-456 3-467 (470)
20 PLN02764 glycosyltransferase f 100.0 2.6E-59 5.7E-64 445.5 41.4 418 4-458 5-446 (453)
21 PLN00414 glycosyltransferase f 100.0 7.7E-59 1.7E-63 445.6 39.5 416 1-458 1-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 7.1E-53 1.5E-57 412.1 28.8 420 4-459 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.7E-51 8.1E-56 408.0 12.6 397 6-458 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.4E-44 3E-49 349.6 35.8 376 10-453 1-388 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 9.8E-44 2.1E-48 345.4 27.3 366 5-436 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 7.9E-42 1.7E-46 325.6 26.8 394 4-458 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.3E-41 2.8E-46 339.6 21.0 407 4-436 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 8.6E-26 1.9E-30 212.9 26.9 318 6-429 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.2E-25 4.9E-30 209.7 26.9 308 5-417 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 2.6E-23 5.6E-28 195.0 25.4 310 6-424 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.9E-21 6.4E-26 179.7 29.3 324 6-436 2-337 (357)
32 PRK00726 murG undecaprenyldiph 99.9 9.7E-21 2.1E-25 181.2 27.9 343 5-456 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 7E-19 1.5E-23 168.0 26.2 325 6-431 1-335 (350)
34 TIGR01133 murG undecaprenyldip 99.8 3.6E-17 7.7E-22 156.2 25.3 317 6-431 2-332 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 1.5E-17 3.2E-22 159.4 22.1 352 5-453 6-384 (385)
36 PRK13609 diacylglycerol glucos 99.8 1.2E-16 2.7E-21 154.1 22.3 142 270-429 200-347 (380)
37 TIGR03590 PseG pseudaminic aci 99.7 6.6E-16 1.4E-20 141.1 21.2 258 6-386 1-278 (279)
38 COG4671 Predicted glycosyl tra 99.7 5.7E-15 1.2E-19 131.0 22.5 327 3-421 8-366 (400)
39 PRK00025 lpxB lipid-A-disaccha 99.7 1.9E-14 4.2E-19 139.0 22.7 351 5-457 2-377 (380)
40 PRK13608 diacylglycerol glucos 99.6 1.2E-13 2.7E-18 133.2 26.7 164 270-455 200-369 (391)
41 PLN02605 monogalactosyldiacylg 99.6 1.4E-12 3E-17 125.7 24.7 151 266-432 200-360 (382)
42 TIGR03492 conserved hypothetic 99.6 1.4E-12 2.9E-17 125.3 23.8 334 13-428 5-372 (396)
43 cd03814 GT1_like_2 This family 99.5 1.1E-11 2.5E-16 118.6 28.1 345 6-453 1-361 (364)
44 PF04101 Glyco_tran_28_C: Glyc 99.5 8.9E-16 1.9E-20 129.8 -1.7 139 274-423 1-147 (167)
45 PF03033 Glyco_transf_28: Glyc 99.5 1.8E-13 3.9E-18 112.0 10.5 126 7-143 1-133 (139)
46 cd03818 GT1_ExpC_like This fam 99.5 1.3E-10 2.8E-15 112.9 30.1 89 329-427 280-373 (396)
47 PLN02871 UDP-sulfoquinovose:DA 99.5 1.4E-10 3.1E-15 114.8 30.5 137 274-432 264-412 (465)
48 cd03794 GT1_wbuB_like This fam 99.4 1.1E-10 2.4E-15 112.6 26.9 354 6-434 1-379 (394)
49 cd03823 GT1_ExpE7_like This fa 99.4 2.5E-10 5.4E-15 109.0 28.4 137 272-428 190-337 (359)
50 cd04962 GT1_like_5 This family 99.4 6.6E-10 1.4E-14 107.0 27.3 112 329-455 252-368 (371)
51 COG3980 spsG Spore coat polysa 99.4 1E-10 2.2E-15 101.1 18.6 297 5-435 1-308 (318)
52 cd03816 GT1_ALG1_like This fam 99.4 9.5E-10 2.1E-14 107.2 27.8 77 330-420 294-381 (415)
53 cd03800 GT1_Sucrose_synthase T 99.4 1.2E-09 2.6E-14 106.2 28.3 335 14-427 20-375 (398)
54 cd03801 GT1_YqgM_like This fam 99.3 2.3E-09 5E-14 102.4 28.9 343 6-453 1-371 (374)
55 cd03817 GT1_UGDG_like This fam 99.3 1.9E-09 4.1E-14 103.4 27.4 83 329-424 258-347 (374)
56 cd03808 GT1_cap1E_like This fa 99.3 4.4E-09 9.4E-14 100.2 29.2 327 6-434 1-343 (359)
57 TIGR03449 mycothiol_MshA UDP-N 99.3 2.9E-09 6.2E-14 103.9 27.3 93 329-433 282-381 (405)
58 PRK10307 putative glycosyl tra 99.3 1.4E-08 3E-13 99.2 31.3 161 273-456 229-406 (412)
59 TIGR02468 sucrsPsyn_pln sucros 99.3 5.2E-09 1.1E-13 108.7 28.2 380 3-431 168-648 (1050)
60 cd03825 GT1_wcfI_like This fam 99.2 7.2E-09 1.6E-13 99.4 26.6 113 329-456 243-363 (365)
61 TIGR00236 wecB UDP-N-acetylglu 99.2 1.2E-09 2.6E-14 104.9 20.4 137 272-429 197-343 (365)
62 cd03805 GT1_ALG2_like This fam 99.2 1.3E-08 2.8E-13 98.8 27.0 85 329-426 279-370 (392)
63 cd03798 GT1_wlbH_like This fam 99.2 2.5E-08 5.5E-13 95.4 28.6 83 329-423 258-347 (377)
64 cd03795 GT1_like_4 This family 99.2 8E-09 1.7E-13 98.8 24.8 141 273-429 191-341 (357)
65 cd03820 GT1_amsD_like This fam 99.2 4.9E-08 1.1E-12 92.4 27.9 96 329-436 234-335 (348)
66 PF04007 DUF354: Protein of un 99.1 4.3E-08 9.2E-13 90.8 25.2 298 5-418 1-308 (335)
67 PRK05749 3-deoxy-D-manno-octul 99.1 3.9E-08 8.4E-13 96.5 26.6 93 332-434 304-402 (425)
68 cd03821 GT1_Bme6_like This fam 99.1 5.4E-08 1.2E-12 93.2 26.8 92 329-434 261-359 (375)
69 cd05844 GT1_like_7 Glycosyltra 99.1 3.7E-08 8.1E-13 94.6 25.4 87 329-427 244-343 (367)
70 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 9.1E-10 2E-14 105.7 14.0 139 271-426 197-343 (363)
71 TIGR02472 sucr_P_syn_N sucrose 99.1 1.9E-07 4.2E-12 91.8 29.7 86 329-424 316-410 (439)
72 cd03796 GT1_PIG-A_like This fa 99.1 1.2E-07 2.6E-12 92.2 27.5 79 329-421 249-334 (398)
73 TIGR02470 sucr_synth sucrose s 99.1 6.9E-07 1.5E-11 91.2 32.8 90 329-428 618-721 (784)
74 PLN02275 transferase, transfer 99.0 1E-07 2.2E-12 91.6 24.2 126 1-140 1-135 (371)
75 cd03819 GT1_WavL_like This fam 99.0 3E-07 6.6E-12 87.8 27.3 86 329-424 245-335 (355)
76 cd03802 GT1_AviGT4_like This f 99.0 1.4E-07 3E-12 89.4 24.1 130 274-421 172-309 (335)
77 cd03811 GT1_WabH_like This fam 99.0 1.5E-07 3.3E-12 89.2 24.3 139 272-429 188-341 (353)
78 PRK09922 UDP-D-galactose:(gluc 99.0 9.8E-08 2.1E-12 91.4 23.0 134 274-422 181-326 (359)
79 cd03812 GT1_CapH_like This fam 99.0 3.3E-07 7.2E-12 87.7 26.6 86 329-427 248-338 (358)
80 cd03799 GT1_amsK_like This is 99.0 7.9E-07 1.7E-11 84.9 28.2 84 329-424 235-331 (355)
81 cd03822 GT1_ecORF704_like This 99.0 4.7E-07 1E-11 86.7 25.8 87 329-428 246-342 (366)
82 cd04955 GT1_like_6 This family 99.0 6.3E-07 1.4E-11 85.9 26.1 154 276-454 196-361 (363)
83 cd03792 GT1_Trehalose_phosphor 98.9 5.9E-07 1.3E-11 86.5 24.8 111 329-456 251-370 (372)
84 cd03807 GT1_WbnK_like This fam 98.9 5E-06 1.1E-10 79.2 30.0 81 329-423 250-335 (365)
85 TIGR02149 glgA_Coryne glycogen 98.9 1.5E-06 3.2E-11 84.3 26.0 167 274-456 202-385 (388)
86 cd04951 GT1_WbdM_like This fam 98.9 1.5E-06 3.2E-11 83.2 25.2 153 273-453 188-356 (360)
87 PLN00142 sucrose synthase 98.8 1.5E-06 3.2E-11 88.9 24.6 113 23-143 319-443 (815)
88 PLN02846 digalactosyldiacylgly 98.8 2.7E-06 5.9E-11 82.4 25.0 73 334-421 288-364 (462)
89 TIGR03088 stp2 sugar transfera 98.8 6.6E-06 1.4E-10 79.3 27.7 111 330-455 255-370 (374)
90 PRK15427 colanic acid biosynth 98.8 4E-06 8.7E-11 81.5 26.0 113 329-456 278-404 (406)
91 cd03809 GT1_mtfB_like This fam 98.8 2.6E-06 5.7E-11 81.5 24.3 93 328-434 251-350 (365)
92 PRK14089 ipid-A-disaccharide s 98.8 1.6E-06 3.5E-11 81.1 21.7 159 273-451 168-344 (347)
93 PRK01021 lpxB lipid-A-disaccha 98.8 3.8E-06 8.2E-11 82.6 24.5 215 214-448 362-599 (608)
94 TIGR03087 stp1 sugar transfera 98.8 3.6E-06 7.9E-11 81.8 24.2 85 329-427 279-369 (397)
95 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 1.5E-06 3.3E-11 82.8 20.6 132 272-423 201-341 (365)
96 COG1519 KdtA 3-deoxy-D-manno-o 98.7 2.8E-05 6.1E-10 72.5 27.3 319 12-436 56-402 (419)
97 cd03804 GT1_wbaZ_like This fam 98.7 1.6E-06 3.4E-11 82.9 18.6 138 275-432 197-339 (351)
98 PF02684 LpxB: Lipid-A-disacch 98.7 8.8E-06 1.9E-10 76.6 23.0 214 213-446 133-366 (373)
99 cd03806 GT1_ALG11_like This fa 98.6 1.9E-05 4.1E-10 77.1 24.8 81 329-422 304-394 (419)
100 PRK15179 Vi polysaccharide bio 98.6 8E-05 1.7E-09 76.2 28.9 93 329-431 573-674 (694)
101 PF02350 Epimerase_2: UDP-N-ac 98.6 2.4E-07 5.1E-12 87.4 9.2 142 270-429 178-327 (346)
102 PRK00654 glgA glycogen synthas 98.5 2E-05 4.3E-10 78.2 22.0 130 273-419 282-427 (466)
103 cd04950 GT1_like_1 Glycosyltra 98.5 8.8E-05 1.9E-09 71.4 25.6 109 329-458 253-372 (373)
104 PLN02949 transferase, transfer 98.5 0.00015 3.2E-09 71.3 26.5 80 329-420 334-422 (463)
105 TIGR02095 glgA glycogen/starch 98.5 8E-05 1.7E-09 74.2 25.1 161 274-456 292-471 (473)
106 cd03791 GT1_Glycogen_synthase_ 98.4 8.4E-05 1.8E-09 74.2 23.8 163 273-454 296-473 (476)
107 TIGR02918 accessory Sec system 98.3 9E-05 1.9E-09 73.6 19.9 133 274-421 320-468 (500)
108 COG0763 LpxB Lipid A disacchar 98.3 0.00031 6.7E-09 65.0 21.1 348 5-456 2-380 (381)
109 KOG3349 Predicted glycosyltran 98.2 1.2E-05 2.6E-10 63.0 9.8 115 274-398 5-133 (170)
110 cd03813 GT1_like_3 This family 98.2 0.0007 1.5E-08 67.4 25.1 90 329-429 353-451 (475)
111 PLN02501 digalactosyldiacylgly 98.2 0.00059 1.3E-08 68.4 23.7 77 331-422 602-683 (794)
112 COG0381 WecB UDP-N-acetylgluco 98.2 0.00015 3.3E-09 67.1 18.3 145 272-434 204-355 (383)
113 PLN02316 synthase/transferase 98.2 0.003 6.4E-08 67.0 29.8 116 329-454 899-1030(1036)
114 cd04949 GT1_gtfA_like This fam 98.2 8E-05 1.7E-09 71.7 16.1 85 329-422 260-347 (372)
115 PF13844 Glyco_transf_41: Glyc 98.1 0.00011 2.3E-09 70.9 14.3 147 272-427 284-437 (468)
116 cd04946 GT1_AmsK_like This fam 98.1 0.00013 2.8E-09 71.1 15.3 112 329-452 288-406 (407)
117 PRK10125 putative glycosyl tra 98.0 0.0021 4.5E-08 62.5 23.2 115 274-414 242-365 (405)
118 PF00534 Glycos_transf_1: Glyc 98.0 1.6E-05 3.5E-10 67.3 7.4 91 329-431 72-169 (172)
119 PRK15484 lipopolysaccharide 1, 97.9 0.00045 9.7E-09 66.7 16.6 112 329-455 256-375 (380)
120 PRK14099 glycogen synthase; Pr 97.9 0.0069 1.5E-07 60.3 24.6 39 3-41 2-46 (485)
121 PRK15490 Vi polysaccharide bio 97.9 0.007 1.5E-07 59.8 23.2 64 329-399 454-522 (578)
122 TIGR02193 heptsyl_trn_I lipopo 97.8 0.0028 6E-08 59.6 19.1 108 6-136 1-111 (319)
123 COG5017 Uncharacterized conser 97.7 0.00042 9E-09 53.5 9.8 108 275-398 2-122 (161)
124 PRK10017 colanic acid biosynth 97.7 0.042 9.2E-07 53.4 25.8 100 342-457 323-424 (426)
125 cd01635 Glycosyltransferase_GT 97.7 0.0053 1.2E-07 54.0 18.1 49 329-379 160-216 (229)
126 KOG2941 Beta-1,4-mannosyltrans 97.5 0.067 1.5E-06 48.8 26.4 351 2-419 10-404 (444)
127 PRK09814 beta-1,6-galactofuran 97.5 0.00038 8.3E-09 65.8 8.2 109 329-454 206-332 (333)
128 PF13477 Glyco_trans_4_2: Glyc 97.1 0.0075 1.6E-07 48.8 11.1 104 6-140 1-108 (139)
129 COG1817 Uncharacterized protei 97.1 0.2 4.4E-06 45.2 22.3 106 13-143 8-116 (346)
130 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0016 3.6E-08 52.4 6.7 80 329-420 52-135 (135)
131 PRK10916 ADP-heptose:LPS hepto 97.1 0.14 3E-06 48.8 20.5 103 5-136 1-106 (348)
132 PRK10422 lipopolysaccharide co 97.0 0.14 3.1E-06 48.7 19.6 109 1-136 1-113 (352)
133 KOG4626 O-linked N-acetylgluco 96.8 0.0084 1.8E-07 58.5 9.8 140 271-423 757-907 (966)
134 cd03789 GT1_LPS_heptosyltransf 96.7 0.18 3.8E-06 46.3 17.6 101 6-135 1-104 (279)
135 TIGR02201 heptsyl_trn_III lipo 96.7 0.081 1.8E-06 50.3 15.5 105 6-136 1-108 (344)
136 TIGR02195 heptsyl_trn_II lipop 96.6 0.16 3.5E-06 48.0 17.2 101 6-135 1-104 (334)
137 PHA01633 putative glycosyl tra 96.6 0.034 7.4E-07 52.1 11.7 84 329-420 200-307 (335)
138 COG3914 Spy Predicted O-linked 96.6 0.031 6.6E-07 54.5 11.4 101 270-376 427-539 (620)
139 PRK10964 ADP-heptose:LPS hepto 96.5 0.33 7.2E-06 45.6 18.6 103 5-130 1-106 (322)
140 COG0859 RfaF ADP-heptose:LPS h 96.4 0.15 3.2E-06 48.2 15.4 105 5-137 2-108 (334)
141 PF13579 Glyco_trans_4_4: Glyc 96.4 0.015 3.2E-07 48.0 7.6 98 20-140 6-105 (160)
142 PF13524 Glyco_trans_1_2: Glyc 96.4 0.038 8.3E-07 40.9 8.9 82 355-452 9-91 (92)
143 PF06722 DUF1205: Protein of u 96.3 0.0061 1.3E-07 45.4 4.1 54 258-311 26-84 (97)
144 PRK14098 glycogen synthase; Pr 96.3 0.052 1.1E-06 54.2 11.9 132 274-418 308-449 (489)
145 PHA01630 putative group 1 glyc 96.2 0.18 3.8E-06 47.6 14.6 105 336-456 196-329 (331)
146 PF12000 Glyco_trans_4_3: Gkyc 95.9 0.075 1.6E-06 44.2 9.0 96 30-140 1-97 (171)
147 PF06258 Mito_fiss_Elm1: Mitoc 95.7 1.1 2.3E-05 41.7 17.1 58 338-398 220-281 (311)
148 PF02374 ArsA_ATPase: Anion-tr 95.2 0.16 3.4E-06 47.1 9.8 42 6-47 2-44 (305)
149 PF01975 SurE: Survival protei 95.1 0.1 2.2E-06 44.7 7.5 42 5-47 1-42 (196)
150 PF13439 Glyco_transf_4: Glyco 94.5 0.27 5.8E-06 41.1 8.8 102 13-142 10-112 (177)
151 PF08660 Alg14: Oligosaccharid 94.4 0.26 5.7E-06 41.2 8.2 117 10-141 3-131 (170)
152 KOG1111 N-acetylglucosaminyltr 94.2 4.7 0.0001 37.5 17.6 45 328-374 250-301 (426)
153 COG0003 ArsA Predicted ATPase 94.1 0.71 1.5E-05 42.9 11.0 43 5-47 2-45 (322)
154 TIGR02400 trehalose_OtsA alpha 93.5 0.36 7.8E-06 47.6 8.6 102 335-456 341-455 (456)
155 COG2894 MinD Septum formation 93.5 0.55 1.2E-05 40.3 8.3 106 1-118 1-121 (272)
156 PLN02939 transferase, transfer 93.5 2 4.2E-05 45.8 14.1 90 329-426 836-941 (977)
157 cd00550 ArsA_ATPase Oxyanion-t 93.4 0.96 2.1E-05 40.8 10.6 38 7-44 2-40 (254)
158 TIGR02919 accessory Sec system 93.3 1.3 2.8E-05 43.4 11.9 130 272-429 283-421 (438)
159 cd02067 B12-binding B12 bindin 93.1 1.3 2.8E-05 34.6 9.6 37 6-42 1-37 (119)
160 PRK13932 stationary phase surv 92.8 1.6 3.6E-05 39.0 10.8 116 3-140 4-134 (257)
161 TIGR00715 precor6x_red precorr 91.0 1 2.2E-05 40.5 7.6 90 6-138 2-99 (256)
162 COG1618 Predicted nucleotide k 90.9 1.5 3.2E-05 35.9 7.4 56 4-68 5-60 (179)
163 PF10093 DUF2331: Uncharacteri 90.9 15 0.00032 34.9 17.3 58 13-70 9-70 (374)
164 COG0438 RfaG Glycosyltransfera 90.8 13 0.00029 34.3 16.4 89 329-429 256-351 (381)
165 COG4370 Uncharacterized protei 90.3 1.7 3.7E-05 39.2 8.0 93 336-436 301-396 (412)
166 PRK05986 cob(I)alamin adenolsy 89.8 5.8 0.00013 33.8 10.6 99 4-121 22-126 (191)
167 TIGR03713 acc_sec_asp1 accesso 89.6 0.84 1.8E-05 45.8 6.4 89 330-435 409-507 (519)
168 cd02070 corrinoid_protein_B12- 89.5 2.7 5.8E-05 36.4 8.7 106 4-135 82-188 (201)
169 PRK08305 spoVFB dipicolinate s 89.4 0.64 1.4E-05 39.7 4.7 46 2-47 3-48 (196)
170 PF02142 MGS: MGS-like domain 89.4 1.5 3.1E-05 32.7 6.1 84 21-135 2-94 (95)
171 cd01425 RPS2 Ribosomal protein 88.9 2 4.4E-05 36.8 7.5 117 18-142 42-161 (193)
172 COG0496 SurE Predicted acid ph 88.7 0.58 1.3E-05 41.4 4.0 113 6-142 2-128 (252)
173 PRK13933 stationary phase surv 88.6 7.5 0.00016 34.8 11.0 114 6-140 2-130 (253)
174 PRK02261 methylaspartate mutas 88.4 1.4 3.1E-05 35.4 5.8 41 3-43 2-42 (137)
175 TIGR00087 surE 5'/3'-nucleotid 88.0 3.6 7.8E-05 36.7 8.6 112 6-140 2-129 (244)
176 PF02441 Flavoprotein: Flavopr 88.0 0.85 1.8E-05 36.2 4.3 45 5-50 1-45 (129)
177 PRK13935 stationary phase surv 87.8 8.3 0.00018 34.5 10.7 41 6-48 2-42 (253)
178 PRK13934 stationary phase surv 87.8 11 0.00023 34.0 11.4 40 6-47 2-41 (266)
179 cd00561 CobA_CobO_BtuR ATP:cor 87.5 12 0.00025 30.9 10.7 97 6-121 4-106 (159)
180 PLN03063 alpha,alpha-trehalose 87.4 2.6 5.6E-05 44.8 8.6 104 336-458 362-478 (797)
181 TIGR02398 gluc_glyc_Psyn gluco 87.1 15 0.00033 36.5 13.2 106 332-457 364-482 (487)
182 smart00851 MGS MGS-like domain 87.0 7 0.00015 28.6 8.5 79 21-135 2-89 (90)
183 TIGR00708 cobA cob(I)alamin ad 86.8 13 0.00028 31.1 10.7 97 5-121 6-108 (173)
184 TIGR02370 pyl_corrinoid methyl 86.6 5.9 0.00013 34.1 9.0 100 4-132 84-187 (197)
185 KOG0853 Glycosyltransferase [C 86.6 0.44 9.6E-06 46.5 2.2 62 360-429 381-442 (495)
186 cd03788 GT1_TPS Trehalose-6-Ph 86.3 3.3 7.2E-05 41.1 8.3 102 334-455 345-459 (460)
187 COG1703 ArgK Putative periplas 85.8 12 0.00025 34.3 10.4 115 6-140 53-175 (323)
188 PRK06849 hypothetical protein; 85.6 5.4 0.00012 38.6 9.3 39 1-43 1-39 (389)
189 PRK12342 hypothetical protein; 85.5 8.6 0.00019 34.5 9.6 32 109-140 108-145 (254)
190 cd03793 GT1_Glycogen_synthase_ 85.4 2.2 4.8E-05 42.8 6.3 79 340-421 468-553 (590)
191 PRK13789 phosphoribosylamine-- 84.8 3.9 8.4E-05 40.1 7.8 39 1-44 1-39 (426)
192 PRK14501 putative bifunctional 84.0 3.5 7.6E-05 43.6 7.6 110 333-458 345-463 (726)
193 PRK00346 surE 5'(3')-nucleotid 83.9 15 0.00033 32.8 10.4 111 6-140 2-125 (250)
194 PF07015 VirC1: VirC1 protein; 83.9 5 0.00011 35.2 7.2 42 6-47 3-45 (231)
195 PF02951 GSH-S_N: Prokaryotic 83.7 2.2 4.8E-05 33.2 4.5 38 5-42 1-41 (119)
196 PRK05647 purN phosphoribosylgl 83.6 12 0.00025 32.4 9.4 104 5-141 2-112 (200)
197 PF00448 SRP54: SRP54-type pro 82.5 9.4 0.0002 32.8 8.4 38 7-44 4-41 (196)
198 PF04413 Glycos_transf_N: 3-De 82.4 3.7 7.9E-05 35.0 5.8 95 12-140 28-127 (186)
199 PRK04885 ppnK inorganic polyph 81.9 2.5 5.4E-05 38.2 4.9 53 349-421 36-94 (265)
200 PF00551 Formyl_trans_N: Formy 81.6 9.2 0.0002 32.4 8.0 107 5-141 1-111 (181)
201 TIGR01007 eps_fam capsular exo 81.5 34 0.00073 29.5 12.0 38 5-42 17-56 (204)
202 cd02071 MM_CoA_mut_B12_BD meth 81.3 19 0.00041 28.1 9.2 37 6-42 1-37 (122)
203 COG2185 Sbm Methylmalonyl-CoA 81.2 3.8 8.3E-05 32.8 5.0 42 3-44 11-52 (143)
204 PF02571 CbiJ: Precorrin-6x re 81.1 6.5 0.00014 35.3 7.1 93 5-138 1-100 (249)
205 PRK07206 hypothetical protein; 80.9 8.4 0.00018 37.7 8.6 36 1-43 1-36 (416)
206 cd03114 ArgK-like The function 80.4 30 0.00065 28.1 10.9 36 7-42 2-37 (148)
207 TIGR00460 fmt methionyl-tRNA f 80.3 17 0.00036 34.0 9.9 32 5-41 1-32 (313)
208 PRK12311 rpsB 30S ribosomal pr 80.1 7.9 0.00017 36.0 7.5 34 109-142 151-186 (326)
209 KOG1387 Glycosyltransferase [C 79.9 53 0.0012 30.7 17.8 269 109-436 149-445 (465)
210 PRK13931 stationary phase surv 79.7 8.9 0.00019 34.6 7.5 98 21-139 16-129 (261)
211 PRK08057 cobalt-precorrin-6x r 79.2 7.9 0.00017 34.7 7.0 89 6-138 4-99 (248)
212 PRK07313 phosphopantothenoylcy 79.2 2.9 6.2E-05 35.5 4.1 42 6-48 3-44 (182)
213 PRK05920 aromatic acid decarbo 79.0 3.3 7.2E-05 35.7 4.4 44 5-49 4-47 (204)
214 cd01424 MGS_CPS_II Methylglyox 78.8 26 0.00056 26.7 9.0 84 16-136 10-100 (110)
215 PF12146 Hydrolase_4: Putative 78.8 4.1 8.8E-05 29.1 4.2 34 5-38 16-49 (79)
216 PF04127 DFP: DNA / pantothena 78.7 1.1 2.4E-05 38.0 1.4 39 4-42 3-53 (185)
217 PF00862 Sucrose_synth: Sucros 78.7 5.6 0.00012 38.9 6.2 121 15-143 296-436 (550)
218 PF06506 PrpR_N: Propionate ca 78.3 20 0.00044 30.2 9.0 111 16-143 17-155 (176)
219 cd01423 MGS_CPS_I_III Methylgl 78.2 22 0.00047 27.5 8.5 86 17-135 11-105 (116)
220 COG3660 Predicted nucleoside-d 78.0 52 0.0011 29.5 14.3 95 293-398 189-298 (329)
221 PF07429 Glyco_transf_56: 4-al 78.0 48 0.001 31.1 11.6 82 330-419 245-332 (360)
222 PRK10867 signal recognition pa 77.7 16 0.00034 35.8 9.1 40 7-46 103-143 (433)
223 PF06564 YhjQ: YhjQ protein; 77.7 52 0.0011 29.4 12.8 36 6-41 3-39 (243)
224 COG0541 Ffh Signal recognition 77.6 18 0.00039 34.9 9.0 60 6-66 102-161 (451)
225 PF01012 ETF: Electron transfe 77.6 14 0.00031 30.5 7.8 105 7-139 2-122 (164)
226 cd02069 methionine_synthase_B1 77.5 20 0.00043 31.3 8.9 39 4-42 88-126 (213)
227 COG0552 FtsY Signal recognitio 77.4 24 0.00051 32.9 9.5 41 7-47 142-182 (340)
228 COG3640 CooC CO dehydrogenase 77.3 21 0.00045 31.4 8.6 47 5-51 1-48 (255)
229 PHA02542 41 41 helicase; Provi 77.2 14 0.00031 36.7 8.7 39 7-45 193-231 (473)
230 PRK06988 putative formyltransf 76.9 23 0.00049 33.1 9.6 32 5-41 3-34 (312)
231 PRK06029 3-octaprenyl-4-hydrox 76.6 4.4 9.5E-05 34.4 4.4 43 6-49 3-46 (185)
232 PRK08506 replicative DNA helic 76.4 19 0.0004 35.9 9.4 42 6-47 194-235 (472)
233 PRK02155 ppnK NAD(+)/NADH kina 76.3 4.2 9.1E-05 37.4 4.6 53 349-421 64-120 (291)
234 cd01980 Chlide_reductase_Y Chl 76.2 12 0.00026 36.6 7.9 27 109-138 349-375 (416)
235 PF02056 Glyco_hydro_4: Family 75.7 49 0.0011 28.1 11.0 113 18-145 41-174 (183)
236 PF03796 DnaB_C: DnaB-like hel 75.7 4.4 9.6E-05 36.6 4.6 126 7-141 22-180 (259)
237 COG1484 DnaC DNA replication p 75.6 5.4 0.00012 36.0 5.0 46 5-50 106-151 (254)
238 PF02310 B12-binding: B12 bind 75.6 8.9 0.00019 29.7 5.8 38 6-43 2-39 (121)
239 PF09314 DUF1972: Domain of un 75.5 36 0.00078 28.9 9.5 56 6-68 3-63 (185)
240 cd02037 MRP-like MRP (Multiple 75.5 13 0.00027 31.0 7.0 38 7-44 2-40 (169)
241 PRK02649 ppnK inorganic polyph 75.5 4.2 9.1E-05 37.6 4.3 54 348-421 68-125 (305)
242 TIGR03600 phage_DnaB phage rep 75.5 22 0.00048 34.8 9.7 41 7-47 197-238 (421)
243 COG2109 BtuR ATP:corrinoid ade 75.4 44 0.00095 28.4 9.7 97 7-121 31-133 (198)
244 PRK03359 putative electron tra 75.4 26 0.00056 31.5 9.2 32 109-140 111-148 (256)
245 COG2099 CobK Precorrin-6x redu 75.0 18 0.00039 32.1 7.7 91 5-138 3-100 (257)
246 PRK14077 pnk inorganic polypho 74.9 5 0.00011 36.8 4.6 53 349-421 65-121 (287)
247 CHL00067 rps2 ribosomal protei 74.8 10 0.00022 33.5 6.4 35 109-143 160-196 (230)
248 TIGR00347 bioD dethiobiotin sy 74.8 24 0.00052 29.2 8.5 28 11-38 5-32 (166)
249 TIGR03371 cellulose_yhjQ cellu 74.8 55 0.0012 29.0 11.5 39 6-44 3-42 (246)
250 PF04464 Glyphos_transf: CDP-G 74.8 4.9 0.00011 38.5 4.9 99 329-436 251-353 (369)
251 PRK05595 replicative DNA helic 74.7 9.9 0.00021 37.5 7.0 41 7-47 204-245 (444)
252 PRK08760 replicative DNA helic 74.5 11 0.00024 37.5 7.3 42 6-47 231-273 (476)
253 PRK08006 replicative DNA helic 74.4 18 0.00038 36.0 8.6 41 7-47 227-268 (471)
254 COG2861 Uncharacterized protei 74.3 48 0.001 29.2 10.0 39 92-136 137-178 (250)
255 PF00731 AIRC: AIR carboxylase 74.3 46 0.001 27.1 11.0 139 274-436 2-148 (150)
256 cd01974 Nitrogenase_MoFe_beta 74.1 27 0.00058 34.4 9.9 27 109-138 376-402 (435)
257 COG0052 RpsB Ribosomal protein 73.5 21 0.00045 31.6 7.7 33 110-142 156-190 (252)
258 TIGR02195 heptsyl_trn_II lipop 73.3 59 0.0013 30.5 11.8 100 5-140 175-279 (334)
259 PRK01911 ppnK inorganic polyph 73.2 5.7 0.00012 36.6 4.6 53 349-421 65-121 (292)
260 TIGR01425 SRP54_euk signal rec 72.9 17 0.00038 35.4 7.9 38 7-44 103-140 (429)
261 TIGR03029 EpsG chain length de 72.9 70 0.0015 29.0 11.8 37 4-40 102-140 (274)
262 cd01421 IMPCH Inosine monophos 72.3 20 0.00043 30.3 7.1 87 19-121 11-102 (187)
263 PRK05632 phosphate acetyltrans 72.3 61 0.0013 34.1 12.4 37 1-39 1-38 (684)
264 cd00984 DnaB_C DnaB helicase C 72.1 40 0.00086 29.9 9.8 42 7-48 16-58 (242)
265 TIGR02852 spore_dpaB dipicolin 71.9 6.3 0.00014 33.5 4.2 42 6-47 2-43 (187)
266 PF02606 LpxK: Tetraacyldisacc 71.8 13 0.00029 34.8 6.8 107 10-135 43-152 (326)
267 PRK02231 ppnK inorganic polyph 71.4 5.6 0.00012 36.1 4.1 54 349-422 43-100 (272)
268 TIGR02329 propionate_PrpR prop 71.2 59 0.0013 32.9 11.5 109 16-140 37-172 (526)
269 PRK00784 cobyric acid synthase 70.9 34 0.00073 34.3 9.8 35 6-40 4-39 (488)
270 PRK04539 ppnK inorganic polyph 70.6 6.6 0.00014 36.2 4.4 53 349-421 69-125 (296)
271 cd03115 SRP The signal recogni 70.3 56 0.0012 27.2 9.8 38 7-44 3-40 (173)
272 COG4088 Predicted nucleotide k 70.3 72 0.0016 27.7 10.0 105 7-146 4-115 (261)
273 PRK00090 bioD dithiobiotin syn 70.2 56 0.0012 28.5 10.2 33 7-39 2-35 (222)
274 PF05159 Capsule_synth: Capsul 70.0 20 0.00043 32.6 7.5 41 333-376 186-226 (269)
275 TIGR00959 ffh signal recogniti 69.8 33 0.00072 33.5 9.2 40 7-46 102-142 (428)
276 PRK11199 tyrA bifunctional cho 69.8 62 0.0013 31.1 11.0 33 4-41 98-131 (374)
277 TIGR02015 BchY chlorophyllide 69.8 37 0.0008 33.3 9.6 31 6-41 287-317 (422)
278 TIGR00064 ftsY signal recognit 69.6 68 0.0015 29.3 10.7 37 7-43 75-111 (272)
279 TIGR00421 ubiX_pad polyprenyl 69.4 5.8 0.00013 33.6 3.5 43 6-49 1-43 (181)
280 PRK03372 ppnK inorganic polyph 69.3 7.4 0.00016 36.0 4.4 53 349-421 73-129 (306)
281 PRK06321 replicative DNA helic 69.1 36 0.00078 33.9 9.4 41 7-47 229-270 (472)
282 TIGR00345 arsA arsenite-activa 69.0 50 0.0011 30.3 9.8 26 22-47 3-28 (284)
283 PRK01185 ppnK inorganic polyph 69.0 8.2 0.00018 35.1 4.6 53 349-421 53-106 (271)
284 cd01965 Nitrogenase_MoFe_beta_ 68.9 15 0.00032 36.1 6.8 36 96-138 361-396 (428)
285 PRK06732 phosphopantothenate-- 68.8 6.1 0.00013 35.0 3.7 37 5-41 1-49 (229)
286 TIGR02655 circ_KaiC circadian 68.7 58 0.0012 32.6 10.9 46 4-49 263-308 (484)
287 PRK09620 hypothetical protein; 68.7 6.9 0.00015 34.6 4.0 38 4-41 3-52 (229)
288 COG2874 FlaH Predicted ATPases 68.6 11 0.00024 32.6 4.9 98 9-123 33-136 (235)
289 cd07039 TPP_PYR_POX Pyrimidine 68.5 34 0.00074 28.4 7.9 28 346-375 63-96 (164)
290 PRK03378 ppnK inorganic polyph 68.2 7.6 0.00017 35.7 4.3 53 349-421 64-120 (292)
291 TIGR00639 PurN phosphoribosylg 68.1 76 0.0017 27.1 10.4 102 5-140 1-110 (190)
292 PRK09165 replicative DNA helic 68.1 27 0.00059 35.0 8.4 41 7-47 220-275 (497)
293 PRK01175 phosphoribosylformylg 67.7 43 0.00094 30.3 8.9 58 4-72 3-60 (261)
294 PRK03501 ppnK inorganic polyph 67.5 9.5 0.00021 34.5 4.7 54 349-421 40-98 (264)
295 PRK02797 4-alpha-L-fucosyltran 67.5 1.1E+02 0.0023 28.5 11.9 80 330-417 206-291 (322)
296 PF06506 PrpR_N: Propionate ca 67.0 9.4 0.0002 32.2 4.3 33 345-378 31-63 (176)
297 COG0859 RfaF ADP-heptose:LPS h 66.6 42 0.0009 31.7 9.1 101 5-142 176-281 (334)
298 COG2085 Predicted dinucleotide 66.5 59 0.0013 28.2 8.9 33 6-43 3-35 (211)
299 PF01075 Glyco_transf_9: Glyco 66.4 13 0.00028 33.1 5.5 98 271-374 104-208 (247)
300 PRK08840 replicative DNA helic 66.1 32 0.0007 34.1 8.4 41 7-47 220-261 (464)
301 PF01210 NAD_Gly3P_dh_N: NAD-d 66.1 4.3 9.3E-05 33.5 2.1 40 6-50 1-41 (157)
302 PF03808 Glyco_tran_WecB: Glyc 66.1 78 0.0017 26.5 11.1 96 21-143 37-137 (172)
303 PF02572 CobA_CobO_BtuR: ATP:c 66.0 52 0.0011 27.5 8.4 99 4-121 3-107 (172)
304 PRK11519 tyrosine kinase; Prov 65.9 1.4E+02 0.0031 31.6 13.7 118 4-139 525-668 (719)
305 PRK13768 GTPase; Provisional 65.9 12 0.00025 33.8 5.0 38 6-43 4-41 (253)
306 PRK14098 glycogen synthase; Pr 65.6 9.8 0.00021 38.1 4.9 38 4-41 5-48 (489)
307 TIGR02113 coaC_strep phosphopa 65.6 8.3 0.00018 32.5 3.7 42 6-48 2-43 (177)
308 PRK14075 pnk inorganic polypho 65.6 11 0.00023 34.1 4.6 54 348-421 41-95 (256)
309 COG0132 BioD Dethiobiotin synt 65.4 96 0.0021 27.3 11.2 33 6-38 3-37 (223)
310 PF01075 Glyco_transf_9: Glyco 65.1 35 0.00076 30.3 8.0 101 4-142 105-213 (247)
311 PRK05579 bifunctional phosphop 64.8 11 0.00024 36.4 4.9 48 1-49 3-50 (399)
312 PRK13982 bifunctional SbtC-lik 64.6 8.6 0.00019 37.9 4.1 39 4-42 256-306 (475)
313 TIGR01285 nifN nitrogenase mol 64.5 71 0.0015 31.4 10.4 86 5-137 312-397 (432)
314 TIGR03878 thermo_KaiC_2 KaiC d 64.4 48 0.001 29.9 8.7 38 6-43 38-75 (259)
315 PF08323 Glyco_transf_5: Starc 64.2 9.7 0.00021 34.1 4.1 37 6-42 1-43 (245)
316 CHL00175 minD septum-site dete 64.0 1.2E+02 0.0025 27.7 11.7 38 5-42 15-54 (281)
317 PRK06904 replicative DNA helic 63.7 33 0.00072 34.1 8.0 41 7-47 224-265 (472)
318 COG2210 Peroxiredoxin family p 63.6 15 0.00032 29.2 4.4 49 1-50 1-49 (137)
319 PRK07004 replicative DNA helic 63.5 35 0.00076 33.9 8.1 41 7-47 216-257 (460)
320 PRK07773 replicative DNA helic 63.1 26 0.00056 38.1 7.7 41 7-47 220-261 (886)
321 TIGR02700 flavo_MJ0208 archaeo 63.1 12 0.00026 33.3 4.4 45 6-50 1-47 (234)
322 PLN02935 Bifunctional NADH kin 62.5 14 0.0003 36.6 5.0 54 348-421 262-319 (508)
323 cd01121 Sms Sms (bacterial rad 62.5 85 0.0018 30.2 10.3 41 7-47 85-125 (372)
324 cd01124 KaiC KaiC is a circadi 62.5 18 0.0004 30.5 5.4 41 7-47 2-42 (187)
325 PRK05636 replicative DNA helic 62.4 23 0.0005 35.6 6.7 41 7-47 268-309 (505)
326 PRK12475 thiamine/molybdopteri 62.4 25 0.00054 33.2 6.6 32 4-40 24-56 (338)
327 TIGR00750 lao LAO/AO transport 62.1 53 0.0011 30.5 8.7 39 6-44 36-74 (300)
328 TIGR03880 KaiC_arch_3 KaiC dom 61.9 37 0.00079 29.8 7.4 43 6-48 18-60 (224)
329 PF06925 MGDG_synth: Monogalac 61.9 23 0.00051 29.5 5.8 22 17-38 1-23 (169)
330 PRK12921 2-dehydropantoate 2-r 61.5 16 0.00035 33.8 5.3 41 5-50 1-41 (305)
331 PLN02929 NADH kinase 61.3 12 0.00026 34.5 4.1 65 349-421 65-138 (301)
332 PRK07414 cob(I)yrinic acid a,c 61.3 1E+02 0.0022 26.1 10.6 102 2-121 19-126 (178)
333 PRK10416 signal recognition pa 61.3 90 0.0019 29.2 10.0 39 6-44 116-154 (318)
334 PRK11823 DNA repair protein Ra 61.1 76 0.0016 31.4 10.0 42 6-47 82-123 (446)
335 PRK13011 formyltetrahydrofolat 61.1 83 0.0018 28.9 9.5 104 3-140 88-196 (286)
336 TIGR01011 rpsB_bact ribosomal 60.9 31 0.00066 30.4 6.5 34 109-142 154-189 (225)
337 TIGR02699 archaeo_AfpA archaeo 60.8 14 0.00031 31.0 4.2 42 6-48 1-44 (174)
338 PRK03708 ppnK inorganic polyph 60.7 13 0.00027 34.0 4.2 53 349-421 58-113 (277)
339 TIGR01501 MthylAspMutase methy 60.7 24 0.00053 28.1 5.3 40 5-44 2-41 (134)
340 PRK01231 ppnK inorganic polyph 60.4 14 0.00031 34.1 4.5 53 349-421 63-119 (295)
341 PRK06249 2-dehydropantoate 2-r 60.4 22 0.00048 33.2 6.0 41 4-50 5-45 (313)
342 COG1663 LpxK Tetraacyldisaccha 59.9 24 0.00052 32.9 5.7 33 10-42 55-87 (336)
343 TIGR00665 DnaB replicative DNA 59.9 57 0.0012 32.1 9.0 42 6-47 197-239 (434)
344 KOG2825 Putative arsenite-tran 59.5 1E+02 0.0022 27.6 9.1 42 6-47 20-62 (323)
345 TIGR00355 purH phosphoribosyla 59.4 34 0.00075 33.8 7.0 87 19-121 11-102 (511)
346 COG0300 DltE Short-chain dehyd 59.3 1.2E+02 0.0027 27.4 10.1 82 5-118 6-92 (265)
347 PRK05234 mgsA methylglyoxal sy 59.3 94 0.002 25.1 10.3 99 3-138 3-113 (142)
348 PRK14478 nitrogenase molybdenu 59.2 80 0.0017 31.5 9.9 25 109-136 392-416 (475)
349 COG1797 CobB Cobyrinic acid a, 59.1 45 0.00098 32.3 7.6 33 6-38 2-35 (451)
350 PRK09841 cryptic autophosphory 59.0 2.5E+02 0.0054 29.9 14.1 39 4-42 530-570 (726)
351 PRK14076 pnk inorganic polypho 59.0 13 0.00028 38.0 4.4 54 348-421 348-405 (569)
352 COG1066 Sms Predicted ATP-depe 58.8 17 0.00037 34.8 4.7 104 6-140 95-219 (456)
353 TIGR01283 nifE nitrogenase mol 58.5 1.5E+02 0.0032 29.4 11.7 27 109-138 394-420 (456)
354 TIGR00682 lpxK tetraacyldisacc 58.1 38 0.00083 31.5 6.9 32 11-42 37-68 (311)
355 PF09001 DUF1890: Domain of un 57.9 10 0.00022 30.0 2.6 31 20-50 15-45 (139)
356 PRK14106 murD UDP-N-acetylmura 57.8 82 0.0018 31.1 9.8 33 5-42 6-38 (450)
357 KOG0780 Signal recognition par 57.6 84 0.0018 30.1 8.8 39 7-45 104-142 (483)
358 PRK13185 chlL protochlorophyll 57.6 19 0.00042 32.7 4.9 41 1-43 1-41 (270)
359 COG0287 TyrA Prephenate dehydr 57.4 1E+02 0.0022 28.2 9.4 42 4-50 3-44 (279)
360 PRK10490 sensor protein KdpD; 56.9 47 0.001 36.3 8.4 40 4-43 24-63 (895)
361 PRK13234 nifH nitrogenase redu 56.7 23 0.00049 32.8 5.3 45 1-45 1-45 (295)
362 cd01017 AdcA Metal binding pro 56.7 1.3E+02 0.0028 27.5 10.3 43 94-140 208-252 (282)
363 PLN02470 acetolactate synthase 56.7 47 0.001 34.2 8.0 90 278-375 2-109 (585)
364 PRK06027 purU formyltetrahydro 56.7 1.1E+02 0.0023 28.2 9.6 104 3-140 88-196 (286)
365 PRK00005 fmt methionyl-tRNA fo 56.4 1.2E+02 0.0025 28.3 10.0 31 5-40 1-31 (309)
366 COG2910 Putative NADH-flavin r 56.3 11 0.00025 31.6 2.8 36 5-44 1-36 (211)
367 cd01018 ZntC Metal binding pro 56.0 1.6E+02 0.0034 26.7 11.5 45 93-141 204-250 (266)
368 PRK10916 ADP-heptose:LPS hepto 55.8 81 0.0018 29.9 9.1 102 6-139 182-288 (348)
369 cd07038 TPP_PYR_PDC_IPDC_like 55.6 37 0.0008 28.1 5.9 25 352-376 63-93 (162)
370 PRK05299 rpsB 30S ribosomal pr 55.5 36 0.00079 30.7 6.1 34 109-142 156-191 (258)
371 PRK00652 lpxK tetraacyldisacch 55.5 34 0.00074 32.1 6.2 36 7-42 52-89 (325)
372 PRK01077 cobyrinic acid a,c-di 55.0 1.7E+02 0.0036 29.1 11.3 35 6-40 5-40 (451)
373 TIGR00521 coaBC_dfp phosphopan 55.0 18 0.00038 34.9 4.3 45 4-49 3-47 (390)
374 COG0801 FolK 7,8-dihydro-6-hyd 54.8 28 0.00062 28.6 4.8 34 274-307 3-36 (160)
375 PF01297 TroA: Periplasmic sol 54.6 47 0.001 29.8 7.0 80 33-140 150-231 (256)
376 cd03466 Nitrogenase_NifN_2 Nit 54.6 96 0.0021 30.5 9.5 26 109-137 371-396 (429)
377 TIGR00640 acid_CoA_mut_C methy 54.4 38 0.00082 26.9 5.5 40 3-42 1-40 (132)
378 PLN02939 transferase, transfer 54.3 22 0.00049 38.2 5.2 40 3-42 480-525 (977)
379 PRK14974 cell division protein 54.2 1.3E+02 0.0028 28.5 9.8 39 6-44 142-180 (336)
380 PRK13710 plasmid maintenance p 54.2 52 0.0011 22.9 5.4 40 411-460 25-64 (72)
381 KOG3339 Predicted glycosyltran 54.1 1.2E+02 0.0027 25.5 8.3 23 9-31 42-64 (211)
382 PRK05748 replicative DNA helic 54.1 74 0.0016 31.5 8.7 42 6-47 205-247 (448)
383 PF03308 ArgK: ArgK protein; 53.8 1.6E+02 0.0035 26.6 9.6 114 6-139 31-152 (266)
384 CHL00072 chlL photochlorophyll 53.6 26 0.00056 32.3 5.1 41 5-45 1-41 (290)
385 TIGR00416 sms DNA repair prote 53.5 56 0.0012 32.4 7.6 42 6-47 96-137 (454)
386 PRK04328 hypothetical protein; 53.4 1.3E+02 0.0029 26.9 9.5 43 5-47 24-66 (249)
387 PRK10964 ADP-heptose:LPS hepto 53.4 1.7E+02 0.0036 27.3 10.7 29 110-140 253-281 (322)
388 PRK06522 2-dehydropantoate 2-r 53.3 20 0.00044 33.1 4.4 41 5-50 1-42 (304)
389 cd01985 ETF The electron trans 53.3 1.4E+02 0.003 25.1 10.1 29 109-137 90-121 (181)
390 KOG0081 GTPase Rab27, small G 53.1 31 0.00067 28.1 4.6 50 95-144 109-168 (219)
391 PRK00881 purH bifunctional pho 53.0 53 0.0012 32.7 7.2 97 6-121 6-107 (513)
392 PRK04761 ppnK inorganic polyph 53.0 21 0.00046 31.9 4.2 26 349-374 26-55 (246)
393 PF02558 ApbA: Ketopantoate re 53.0 23 0.0005 28.7 4.3 28 23-50 12-39 (151)
394 TIGR00696 wecB_tagA_cpsF bacte 52.9 1E+02 0.0022 26.0 8.1 84 21-135 37-129 (177)
395 cd01968 Nitrogenase_NifE_I Nit 52.9 31 0.00066 33.7 5.7 26 109-137 355-380 (410)
396 PRK10037 cell division protein 52.6 25 0.00055 31.5 4.8 38 6-43 3-41 (250)
397 cd02032 Bchl_like This family 52.2 25 0.00054 31.9 4.8 38 5-42 1-38 (267)
398 PF01695 IstB_IS21: IstB-like 51.8 25 0.00055 29.6 4.4 46 4-49 47-92 (178)
399 PF08433 KTI12: Chromatin asso 51.6 1.2E+02 0.0027 27.6 9.0 105 6-147 3-113 (270)
400 PF07355 GRDB: Glycine/sarcosi 51.6 31 0.00067 32.3 5.1 42 92-137 66-117 (349)
401 cd06533 Glyco_transf_WecG_TagA 51.0 1.1E+02 0.0023 25.7 8.0 90 21-136 35-129 (171)
402 cd02034 CooC The accessory pro 50.7 38 0.00083 26.2 4.9 37 6-42 1-37 (116)
403 PRK08229 2-dehydropantoate 2-r 50.6 26 0.00057 33.1 4.8 41 5-50 3-43 (341)
404 PF04748 Polysacc_deac_2: Dive 50.4 1.1E+02 0.0025 26.6 8.2 39 92-136 105-146 (213)
405 PLN02331 phosphoribosylglycina 50.3 1.4E+02 0.003 26.0 8.7 33 109-141 77-110 (207)
406 PRK06719 precorrin-2 dehydroge 50.3 29 0.00064 28.5 4.4 34 4-42 13-46 (157)
407 COG1893 ApbA Ketopantoate redu 50.2 38 0.00082 31.5 5.6 50 5-68 1-50 (307)
408 TIGR01281 DPOR_bchL light-inde 50.0 29 0.00063 31.4 4.8 39 5-43 1-39 (268)
409 KOG0202 Ca2+ transporting ATPa 49.8 2.4E+02 0.0052 30.1 11.3 169 273-458 572-750 (972)
410 cd07025 Peptidase_S66 LD-Carbo 49.7 29 0.00063 31.9 4.7 74 284-376 45-120 (282)
411 PRK06731 flhF flagellar biosyn 49.7 1.8E+02 0.0039 26.5 9.7 40 5-44 76-115 (270)
412 PF04244 DPRP: Deoxyribodipyri 49.7 20 0.00043 31.6 3.4 26 17-42 47-72 (224)
413 TIGR01286 nifK nitrogenase mol 49.3 97 0.0021 31.3 8.6 27 109-138 436-462 (515)
414 cd03789 GT1_LPS_heptosyltransf 49.1 1.3E+02 0.0029 27.3 9.1 86 20-140 141-226 (279)
415 PRK08125 bifunctional UDP-gluc 48.4 1.7E+02 0.0036 30.7 10.7 34 109-142 74-108 (660)
416 PLN02727 NAD kinase 48.3 28 0.00061 37.1 4.7 54 348-421 743-800 (986)
417 TIGR00745 apbA_panE 2-dehydrop 47.9 25 0.00055 32.2 4.2 28 23-50 5-32 (293)
418 cd02040 NifH NifH gene encodes 47.9 34 0.00073 31.0 5.0 40 6-45 3-42 (270)
419 PRK09219 xanthine phosphoribos 47.8 44 0.00096 28.5 5.2 30 109-138 49-80 (189)
420 PF05693 Glycogen_syn: Glycoge 47.5 29 0.00062 35.2 4.5 90 339-434 462-566 (633)
421 PRK06067 flagellar accessory p 47.3 58 0.0013 28.8 6.2 42 6-47 27-68 (234)
422 TIGR02201 heptsyl_trn_III lipo 46.9 2.5E+02 0.0055 26.4 11.9 28 110-139 260-287 (344)
423 PLN02712 arogenate dehydrogena 46.3 1.2E+02 0.0026 31.8 9.0 35 3-42 368-402 (667)
424 TIGR01005 eps_transp_fam exopo 46.1 3E+02 0.0066 29.4 12.3 38 5-42 546-585 (754)
425 PRK09435 membrane ATPase/prote 45.8 1.9E+02 0.004 27.4 9.4 40 6-45 58-97 (332)
426 PRK13010 purU formyltetrahydro 45.5 2.1E+02 0.0046 26.4 9.5 104 3-140 92-200 (289)
427 PRK13982 bifunctional SbtC-lik 45.5 33 0.00073 33.9 4.6 46 4-50 70-115 (475)
428 PRK14619 NAD(P)H-dependent gly 45.3 54 0.0012 30.5 5.9 34 4-42 4-37 (308)
429 PF13460 NAD_binding_10: NADH( 45.1 60 0.0013 27.1 5.8 30 12-43 4-33 (183)
430 PLN02285 methionyl-tRNA formyl 45.1 1.6E+02 0.0034 27.9 8.9 34 109-142 92-126 (334)
431 PRK13230 nitrogenase reductase 44.9 42 0.00091 30.7 5.1 40 6-45 3-42 (279)
432 cd01977 Nitrogenase_VFe_alpha 44.8 96 0.0021 30.3 7.8 26 109-137 357-382 (415)
433 PRK10353 3-methyl-adenine DNA 44.7 1.1E+02 0.0024 26.0 7.0 65 373-437 22-99 (187)
434 COG0205 PfkA 6-phosphofructoki 44.7 60 0.0013 30.7 5.9 115 6-136 4-123 (347)
435 PRK08591 acetyl-CoA carboxylas 44.5 1.9E+02 0.0042 28.5 10.0 33 6-43 4-36 (451)
436 cd01141 TroA_d Periplasmic bin 44.5 36 0.00078 28.7 4.3 31 109-139 68-100 (186)
437 COG1435 Tdk Thymidine kinase [ 44.5 83 0.0018 26.9 6.1 37 6-42 5-42 (201)
438 COG1698 Uncharacterized protei 44.4 1.1E+02 0.0023 22.3 5.7 50 408-457 16-66 (93)
439 COG0503 Apt Adenine/guanine ph 43.6 55 0.0012 27.7 5.1 37 97-137 44-82 (179)
440 cd02065 B12-binding_like B12 b 43.5 56 0.0012 25.3 5.0 37 7-43 2-38 (125)
441 COG0467 RAD55 RecA-superfamily 43.4 61 0.0013 29.2 5.8 46 5-50 24-69 (260)
442 PRK10422 lipopolysaccharide co 43.2 1.3E+02 0.0029 28.4 8.4 28 110-139 262-289 (352)
443 cd01019 ZnuA Zinc binding prot 42.9 2.4E+02 0.0053 25.8 9.7 44 93-140 215-260 (286)
444 PRK10818 cell division inhibit 42.9 45 0.00097 30.2 4.9 40 1-42 1-41 (270)
445 PRK12446 undecaprenyldiphospho 42.5 1.1E+02 0.0025 29.0 7.7 32 343-374 86-120 (352)
446 PRK06769 hypothetical protein; 42.5 2E+02 0.0043 24.0 8.5 22 21-42 33-54 (173)
447 PRK09423 gldA glycerol dehydro 42.5 1.4E+02 0.0031 28.5 8.5 98 20-142 17-119 (366)
448 PF02702 KdpD: Osmosensitive K 42.4 43 0.00094 28.8 4.2 39 4-42 5-43 (211)
449 PLN02989 cinnamyl-alcohol dehy 42.4 41 0.00089 31.4 4.7 38 1-41 1-38 (325)
450 COG0665 DadA Glycine/D-amino a 42.3 32 0.00069 33.0 4.1 37 1-42 1-37 (387)
451 PRK08155 acetolactate synthase 42.2 44 0.00096 34.2 5.2 80 288-375 14-109 (564)
452 TIGR01918 various_sel_PB selen 42.2 52 0.0011 31.7 5.1 46 352-399 348-395 (431)
453 TIGR01917 gly_red_sel_B glycin 42.1 52 0.0011 31.8 5.1 43 92-138 62-114 (431)
454 PLN03064 alpha,alpha-trehalose 41.8 1E+02 0.0023 33.5 7.9 104 336-458 446-562 (934)
455 PRK06718 precorrin-2 dehydroge 41.7 2.3E+02 0.005 24.4 10.5 143 271-436 10-164 (202)
456 COG2236 Predicted phosphoribos 41.7 82 0.0018 26.9 5.8 48 92-141 13-63 (192)
457 TIGR02990 ectoine_eutA ectoine 41.4 1.9E+02 0.0042 25.7 8.4 97 18-138 105-213 (239)
458 COG2120 Uncharacterized protei 41.3 46 0.00099 29.6 4.5 39 2-40 8-46 (237)
459 PLN02256 arogenate dehydrogena 41.3 1.6E+02 0.0034 27.4 8.2 34 4-42 36-69 (304)
460 PF00318 Ribosomal_S2: Ribosom 40.8 2.4E+02 0.0053 24.5 10.3 34 109-142 142-177 (211)
461 PRK08163 salicylate hydroxylas 40.7 33 0.00072 33.1 3.9 35 1-40 1-35 (396)
462 cd07062 Peptidase_S66_mccF_lik 40.5 45 0.00098 31.0 4.6 74 284-376 49-124 (308)
463 PRK14477 bifunctional nitrogen 40.3 2.6E+02 0.0057 30.7 10.8 28 109-139 388-415 (917)
464 TIGR02114 coaB_strep phosphopa 39.9 29 0.00062 30.7 3.0 19 22-40 29-47 (227)
465 cd01422 MGS Methylglyoxal synt 39.8 1.7E+02 0.0038 22.5 8.7 86 16-137 9-107 (115)
466 PRK09545 znuA high-affinity zi 39.6 2.7E+02 0.0059 25.9 9.6 44 93-140 239-284 (311)
467 PRK06847 hypothetical protein; 39.6 34 0.00074 32.7 3.8 35 1-40 1-35 (375)
468 TIGR01744 XPRTase xanthine pho 39.4 71 0.0015 27.3 5.2 30 109-138 49-80 (191)
469 PRK14618 NAD(P)H-dependent gly 39.4 44 0.00095 31.4 4.4 37 1-42 1-37 (328)
470 PRK12724 flagellar biosynthesi 39.4 1.8E+02 0.0038 28.5 8.3 40 7-46 226-266 (432)
471 PRK14569 D-alanyl-alanine synt 39.3 66 0.0014 29.7 5.5 39 2-40 1-43 (296)
472 PRK05784 phosphoribosylamine-- 39.3 2.3E+02 0.0051 28.4 9.6 34 5-43 1-36 (486)
473 PF13450 NAD_binding_8: NAD(P) 39.2 40 0.00086 23.1 3.0 21 22-42 9-29 (68)
474 KOG3062 RNA polymerase II elon 39.2 71 0.0015 28.0 5.0 35 6-40 3-38 (281)
475 cd01840 SGNH_hydrolase_yrhL_li 39.1 74 0.0016 25.7 5.2 38 271-309 50-87 (150)
476 PLN02948 phosphoribosylaminoim 38.8 4.6E+02 0.0099 27.0 13.4 87 349-439 466-561 (577)
477 COG3349 Uncharacterized conser 38.7 33 0.00073 33.8 3.4 32 5-41 1-32 (485)
478 PRK08199 thiamine pyrophosphat 38.6 1.1E+02 0.0024 31.3 7.4 27 349-375 72-104 (557)
479 PF03446 NAD_binding_2: NAD bi 38.5 34 0.00073 28.3 3.1 30 6-40 3-32 (163)
480 PRK00843 egsA NAD(P)-dependent 38.3 3E+02 0.0065 26.1 9.8 111 1-141 1-121 (350)
481 TIGR01861 ANFD nitrogenase iro 38.2 3.4E+02 0.0073 27.5 10.5 26 109-137 397-422 (513)
482 PTZ00445 p36-lilke protein; Pr 38.2 2.2E+02 0.0049 24.8 7.8 29 16-44 74-103 (219)
483 PLN02293 adenine phosphoribosy 38.2 89 0.0019 26.6 5.6 29 109-137 61-91 (187)
484 PF01380 SIS: SIS domain SIS d 38.1 1E+02 0.0022 23.9 5.8 38 13-50 61-98 (131)
485 TIGR00173 menD 2-succinyl-5-en 37.7 1.2E+02 0.0026 29.8 7.3 27 346-374 63-95 (432)
486 PLN02695 GDP-D-mannose-3',5'-e 37.7 63 0.0014 31.0 5.3 37 1-41 18-54 (370)
487 PRK00561 ppnK inorganic polyph 37.6 54 0.0012 29.6 4.4 26 349-374 34-63 (259)
488 PLN02891 IMP cyclohydrolase 37.6 1.2E+02 0.0026 30.4 6.9 87 20-121 34-125 (547)
489 TIGR01662 HAD-SF-IIIA HAD-supe 37.6 2E+02 0.0042 22.4 9.2 22 21-42 30-51 (132)
490 PRK00885 phosphoribosylamine-- 37.4 1.8E+02 0.004 28.3 8.5 29 5-38 1-30 (420)
491 COG0452 Dfp Phosphopantothenoy 37.3 54 0.0012 31.7 4.6 46 4-50 4-49 (392)
492 TIGR00655 PurU formyltetrahydr 37.2 3.3E+02 0.0072 25.0 9.6 105 3-141 83-192 (280)
493 PRK15424 propionate catabolism 37.0 4E+02 0.0086 27.2 10.8 42 92-140 141-182 (538)
494 TIGR00313 cobQ cobyric acid sy 37.0 4.4E+02 0.0096 26.3 11.9 28 13-40 8-35 (475)
495 TIGR03877 thermo_KaiC_1 KaiC d 36.9 3E+02 0.0064 24.3 9.1 43 5-47 22-64 (237)
496 PF02585 PIG-L: GlcNAc-PI de-N 36.9 1.8E+02 0.0038 22.6 6.9 22 20-41 13-34 (128)
497 PRK06835 DNA replication prote 36.9 57 0.0012 30.7 4.6 45 5-49 184-228 (329)
498 TIGR01990 bPGM beta-phosphoglu 36.8 1.6E+02 0.0035 24.4 7.2 23 21-43 92-114 (185)
499 PF00982 Glyco_transf_20: Glyc 36.8 1.7E+02 0.0037 29.2 8.1 106 334-456 357-473 (474)
500 COG0240 GpsA Glycerol-3-phosph 36.8 51 0.0011 30.8 4.1 33 5-42 2-34 (329)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.3e-66 Score=498.15 Aligned_cols=436 Identities=34% Similarity=0.671 Sum_probs=339.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL 80 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (460)
|..+.||+++|+|++||++|++.||+.|+.+|++||+++++.+...+.+... ..++++|+.+|.+.+.. ...++
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~--~~~~~ 76 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDD--PPRDF 76 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCC--ccccH
Confidence 5667899999999999999999999999999999999999988776655421 11369999999876532 22234
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCC
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLL 160 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
..+...+...+.+.++++++.+... .++++||+|.+..|+..+|+++|||++.++++.+.....+.+.+.....+..
T Consensus 77 ~~l~~a~~~~~~~~l~~ll~~l~~~---~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 77 FSIENSMENTMPPQLERLLHKLDED---GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred HHHHHHHHHhchHHHHHHHHHhcCC---CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 4445555446788888888876431 2358999999999999999999999999999988777766655443322221
Q ss_pred CCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccc---------
Q 012594 161 DSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACD--------- 231 (460)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~--------- 231 (460)
+..+.+...+++..+|+++.+...+++. +.............+.+..+...+++.+++||+.+||+....
T Consensus 154 ~~~~~~~~~~~~~~~Pg~~~l~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 232 (448)
T PLN02562 154 SETGCPRQLEKICVLPEQPLLSTEDLPW-LIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNG 232 (448)
T ss_pred ccccccccccccccCCCCCCCChhhCcc-hhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccc
Confidence 1111111112334678888777777773 222211122223444455556778899999999999985332
Q ss_pred cCCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCc-CCCHHHHHHHHHHHHhCCCCEEEEEcC
Q 012594 232 LIPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVA-VLSQEQLEELALGLESLQQPFLWVVRP 310 (460)
Q Consensus 232 ~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~ 310 (460)
..|+++.|||++............++.+.++.+||+.++++++|||||||+. ..+.+++++++.++++++.+|||++..
T Consensus 233 ~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~ 312 (448)
T PLN02562 233 QNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNP 312 (448)
T ss_pred cCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 3578999999986542110011223456678899999988889999999985 678999999999999999999999864
Q ss_pred CCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhh
Q 012594 311 DFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDA 390 (460)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~ 390 (460)
. ....++++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.
T Consensus 313 ~----~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~ 388 (448)
T PLN02562 313 V----WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDV 388 (448)
T ss_pred C----chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 3 123578888888899999999999999999999999999999999999999999999999999999999999864
Q ss_pred hcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 391 WKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 391 lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
+|+|+.+ ..+++++|.++|+++|.|++||+||++++++++++ .+||+|.+++++|+++++
T Consensus 389 ~g~g~~~-----~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 389 WKIGVRI-----SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred hCceeEe-----CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 6999888 45799999999999999999999999999999876 567999999999999873
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-63 Score=478.54 Aligned_cols=433 Identities=27% Similarity=0.479 Sum_probs=334.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHH
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKV 83 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (460)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. ...++++|..+|.++++..........+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 4699999999999999999999999999999999999876421 11 1113699999998777532122223345
Q ss_pred HHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcC-CCC
Q 012594 84 RQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGL-LDS 162 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 162 (460)
+..+.+.+...++++++.+..... .++++||+|.+..|+..+|+++|||++.++++.++....+.+++.....+. .+.
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~-~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~ 158 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQG-NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPL 158 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccC-CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCc
Confidence 555555667778888877642111 467999999999999999999999999999999988776665443332211 110
Q ss_pred CCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC-----CCee
Q 012594 163 NGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI-----PNIL 237 (460)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-----p~~~ 237 (460)
.... .+....+|+++++...+++. ..... ...+...+... .....++.+++||+.+||+...... ++++
T Consensus 159 ~~~~--~~~~~~iPg~~~~~~~dlp~-~~~~~--~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~ 232 (451)
T PLN02410 159 KEPK--GQQNELVPEFHPLRCKDFPV-SHWAS--LESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVY 232 (451)
T ss_pred cccc--cCccccCCCCCCCChHHCcc-hhcCC--cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEE
Confidence 0000 11223578888777666662 21111 11122222222 2346789999999999998766533 5799
Q ss_pred eeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCc--c
Q 012594 238 TIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMN--K 315 (460)
Q Consensus 238 ~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--~ 315 (460)
.|||++...... ...+..+.++.+||+.++++++|||||||....+.+++.+++.+|+.++.+|+|++...... +
T Consensus 233 ~vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~ 309 (451)
T PLN02410 233 PIGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSE 309 (451)
T ss_pred EecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccc
Confidence 999998643211 11123345688999999888999999999999999999999999999999999999743111 1
Q ss_pred ccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhccee
Q 012594 316 SHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGL 395 (460)
Q Consensus 316 ~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~ 395 (460)
....+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|+|+
T Consensus 310 ~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~ 389 (451)
T PLN02410 310 WIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGI 389 (451)
T ss_pred hhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeE
Confidence 12247999999999999999999999999999999999999999999999999999999999999999999987569999
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012594 396 RFFPDENGIITRQEIQRQVKALLNDG---GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKA 457 (460)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 457 (460)
.+. +.+++++|+++|+++|.++ +||+|+++|++++++++++||+|.+++++|++.+..
T Consensus 390 ~~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 390 QVE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred EeC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 995 5689999999999999775 699999999999999999999999999999999864
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.2e-63 Score=479.08 Aligned_cols=447 Identities=33% Similarity=0.563 Sum_probs=341.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhcc--Ccc---ccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASM--PQK---AEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
..||+++|+|++||++|++.||+.|+.+|..|||++|+.+...+.+.. ... ......+.|..+|+++++......
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 469999999999999999999999999999999999998777664311 000 011234777778877765421223
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhc
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAG 158 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
++..++..+...+.+.++++++.+.... .+++|||+|.+..|+..+|+++|||+++++++.++....+.+++ .+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~----~~ 160 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY----HG 160 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC--CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----hc
Confidence 4444555555566778888888764211 33599999999999999999999999999999998887776652 12
Q ss_pred CCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC---CC
Q 012594 159 LLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI---PN 235 (460)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~---p~ 235 (460)
..+.......+ ....+|++|.+...+++ .++............+.+..+...+++.+++||+.+||....... ..
T Consensus 161 ~~~~~~~~~~~-~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~ 238 (480)
T PLN02555 161 LVPFPTETEPE-IDVQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCP 238 (480)
T ss_pred CCCcccccCCC-ceeecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCC
Confidence 11100011111 22358999888888887 333221112233344445555667889999999999998766533 13
Q ss_pred eeeeCccCCCCCcc-Ccc-CCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 012594 236 ILTIGPLLGRDHLE-HSA-VNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFM 313 (460)
Q Consensus 236 ~~~vGp~~~~~~~~-~~~-~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 313 (460)
++.|||+....... .+. +..+..+.++.+||+.++++++|||+|||+...+.+++.+++.+++.++.+|||++.....
T Consensus 239 v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~ 318 (480)
T PLN02555 239 IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHK 318 (480)
T ss_pred EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcc
Confidence 89999997532111 110 1224456789999999988889999999999999999999999999999999999874211
Q ss_pred c--cccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhh
Q 012594 314 N--KSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAW 391 (460)
Q Consensus 314 ~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~l 391 (460)
. .....+|+++.++.++|+++++|+||.+||+|++|++||||||+||++||+++|||||++|++.||+.||+++++.+
T Consensus 319 ~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~ 398 (480)
T PLN02555 319 DSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVF 398 (480)
T ss_pred cccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHh
Confidence 0 11235788888888899999999999999999999999999999999999999999999999999999999999867
Q ss_pred cceeEeecC--CCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 392 KIGLRFFPD--ENGIITRQEIQRQVKALLNDG---GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 392 g~g~~~~~~--~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
|+|+.+... ..+.+++++|.++|+++|.++ ++|+||++|+++.++++++||+|.+++++||+++...
T Consensus 399 gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 399 KTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 999999421 124689999999999999754 6999999999999999999999999999999999753
No 4
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.8e-63 Score=474.55 Aligned_cols=446 Identities=24% Similarity=0.440 Sum_probs=329.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCccch-hHHhhccCccccCCCCeEEEEcCCCCCCCC-cCcc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEHG--IKVTFVSTEHMH-AKITASMPQKAEQSSLITMVSIPDGLESHE-ADRR 78 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~rG--h~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 78 (460)
++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+...........++++|..+|....... ....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 357999999999999999999999999998 999999998765 222221110001123699999995432111 0122
Q ss_pred cHHHHHHHHHhhchH----HHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhH
Q 012594 79 DLHKVRQSMLTVMPG----CLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKL 154 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~----~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 154 (460)
+....+..+...+.+ .+.++++...... .+++|||+|.+..|+..+|+++|||++.++++.+.....+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDG--VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCC--CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 344333333334433 3444444321111 2349999999999999999999999999999999877766665432
Q ss_pred hhhcCCCCCCCCCCCCcccccCCC-CCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCcccc---
Q 012594 155 VEAGLLDSNGNAMTDEPILLSEGT-LPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPAC--- 230 (460)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~--- 230 (460)
.... .....+..+ ....+|++ +++...+++. ++..... ...+.+......+++.+++||+++||++..
T Consensus 160 ~~~~--~~~~~~~~~-~~~~vPgl~~~l~~~dlp~-~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~ 231 (468)
T PLN02207 160 HSKD--TSVFVRNSE-EMLSIPGFVNPVPANVLPS-ALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNHF 231 (468)
T ss_pred cccc--cccCcCCCC-CeEECCCCCCCCChHHCcc-hhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 1100 000001111 23468998 5787777773 2222111 122333344567899999999999998732
Q ss_pred ---ccCCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEE
Q 012594 231 ---DLIPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWV 307 (460)
Q Consensus 231 ---~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 307 (460)
+..|+++.|||++........ ......+.++.+||++++++++|||||||....+.+++++++.+++.++++|||+
T Consensus 232 ~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~ 310 (468)
T PLN02207 232 LDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWS 310 (468)
T ss_pred HhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 345789999999864321100 0001133679999999988899999999999999999999999999999999999
Q ss_pred EcCCCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHH
Q 012594 308 VRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYI 387 (460)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v 387 (460)
+..... .....+|++|.++.++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++
T Consensus 311 ~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 389 (468)
T PLN02207 311 LRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLM 389 (468)
T ss_pred EeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHH
Confidence 985311 1123478999988899999999999999999999999999999999999999999999999999999999987
Q ss_pred HhhhcceeEeecC----CCCccCHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 012594 388 FDAWKIGLRFFPD----ENGIITRQEIQRQVKALLN--DGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAIGC 460 (460)
Q Consensus 388 ~~~lg~g~~~~~~----~~~~~~~~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~ 460 (460)
++.+|+|+.+..+ ..+.+++++|+++|+++|+ +++||+||+++++.+++++.+||+|.+++++|++++..+++
T Consensus 390 ~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~~~ 468 (468)
T PLN02207 390 VKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGIKT 468 (468)
T ss_pred HHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccC
Confidence 7657999987421 1134699999999999997 57899999999999999999999999999999999987763
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.2e-63 Score=471.65 Aligned_cols=427 Identities=33% Similarity=0.610 Sum_probs=330.7
Q ss_pred CCC-CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCC-CcCcc
Q 012594 1 MDR-EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESH-EADRR 78 (460)
Q Consensus 1 m~~-~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~ 78 (460)
|.+ +.||+++|+|++||++|+++||+.|+.+|+.|||++|+.+.+.+... ..++++|..+|.++++. .....
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCccccccc
Confidence 444 46999999999999999999999999999999999999876655322 11369999999888763 21233
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCc-cEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhh
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKI-SCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEA 157 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (460)
++..++..+...+.+.++++++.+... .+| ||||+|.+..|+..+|+++|||++.++++.++....+.+. . ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~-~~~ 149 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQST---DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-Y-INN 149 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhcc---CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-H-hcc
Confidence 455666666667788888888875431 345 9999999999999999999999999999887766444321 1 100
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC---C
Q 012594 158 GLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI---P 234 (460)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~---p 234 (460)
.. ....+|+++.+...+++ .++............+....+...+++.+++||+.+||+...... +
T Consensus 150 ----------~~-~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 217 (449)
T PLN02173 150 ----------GS-LTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVC 217 (449)
T ss_pred ----------CC-ccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcC
Confidence 00 11236777777777776 322221112223333444455667899999999999998765543 4
Q ss_pred CeeeeCccCCCCC----ccCcc---CCCC--CCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEE
Q 012594 235 NILTIGPLLGRDH----LEHSA---VNFW--PEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFL 305 (460)
Q Consensus 235 ~~~~vGp~~~~~~----~~~~~---~~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 305 (460)
+++.|||++.... ..... .+.| ..++++.+||+.++++++|||||||+...+.+++.+++.++ .+.+|+
T Consensus 218 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~fl 295 (449)
T PLN02173 218 PVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYL 295 (449)
T ss_pred CeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEE
Confidence 6999999974210 00000 1122 23446999999999899999999999999999999999999 577899
Q ss_pred EEEcCCCCccccCCCchhHHhhh-CCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhH
Q 012594 306 WVVRPDFMNKSHAKLPDGFVERV-SDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNR 384 (460)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a 384 (460)
|++... ....+|+++.++. ++|+++++|+||.+||+|++|++||||||+||++||+++|||||++|++.||+.||
T Consensus 296 Wvvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na 371 (449)
T PLN02173 296 WVVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNA 371 (449)
T ss_pred EEEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHH
Confidence 999743 1234788887776 68899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeEeecCC-CCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 385 NYIFDAWKIGLRFFPDE-NGIITRQEIQRQVKALLNDG---GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 385 ~~v~~~lg~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
+++++.+|+|+.+..++ +..+++++|+++++++|.++ ++|+||++++++.++++++||+|.+++++|++++.
T Consensus 372 ~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 372 KYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99998679999986532 13469999999999999764 58999999999999999999999999999999885
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1e-62 Score=471.41 Aligned_cols=431 Identities=28% Similarity=0.530 Sum_probs=331.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCccc-hhHHhhccCccccCCCCeEEEEcCCCCCCCCc-CcccH
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAE-HGIKVTFVSTEHM-HAKITASMPQKAEQSSLITMVSIPDGLESHEA-DRRDL 80 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~-rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 80 (460)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+.+. ....++++|+.++++++.... ...++
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~----~~~~~~i~~~~i~dglp~g~~~~~~~~ 78 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN----HNNVENLSFLTFSDGFDDGVISNTDDV 78 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc----CCCCCCEEEEEcCCCCCCccccccccH
Confidence 469999999999999999999999996 6999999999864 2221111 011236999999987765421 23345
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCC
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLL 160 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
...+..+...+.+.++++++.+.... .+++|||+|.+..|+..+|+++|||++.+++++++....+.+.+. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~l~~~~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~----~-- 150 (455)
T PLN02152 79 QNRLVNFERNGDKALSDFIEANLNGD--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST----G-- 150 (455)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhccC--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc----c--
Confidence 55566666677888999988764321 345999999999999999999999999999999988776655321 0
Q ss_pred CCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcc--cccEEEEccccccCccccccCC--Ce
Q 012594 161 DSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLK--ISNWILCNSFYELDPPACDLIP--NI 236 (460)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~le~~~~~~~p--~~ 236 (460)
......+|+++.+...+++ .++.....+......+.+..+... .++.+++||+.+||........ .+
T Consensus 151 --------~~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v 221 (455)
T PLN02152 151 --------NNSVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEM 221 (455)
T ss_pred --------CCCeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCE
Confidence 0112257888877777777 333322222222233333333322 3479999999999988776552 59
Q ss_pred eeeCccCCCCCccCcc-CC---CCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012594 237 LTIGPLLGRDHLEHSA-VN---FWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDF 312 (460)
Q Consensus 237 ~~vGp~~~~~~~~~~~-~~---~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 312 (460)
+.|||+.......... +. .+..+.++.+||+.++++++|||||||+...+.+++++++.+|+.++.+|||++....
T Consensus 222 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~ 301 (455)
T PLN02152 222 VAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKL 301 (455)
T ss_pred EEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 9999997532100000 00 1223457999999998889999999999999999999999999999999999997531
Q ss_pred Cc------cc--cCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhH
Q 012594 313 MN------KS--HAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNR 384 (460)
Q Consensus 313 ~~------~~--~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a 384 (460)
.. .. ...++++|.++.++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 381 (455)
T PLN02152 302 NREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANA 381 (455)
T ss_pred ccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHH
Confidence 10 00 11246888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012594 385 NYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG--GIKANALKMKQMARKSLVEGGSSFRNFESFVSQL 455 (460)
Q Consensus 385 ~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 455 (460)
+++++.+|+|+.+..+..+.+++++|+++|+++|+|+ +||+||++|+++++++..+||+|.+++++|++++
T Consensus 382 ~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 382 KLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999856888887543234569999999999999765 4899999999999999999999999999999986
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.4e-62 Score=474.14 Aligned_cols=430 Identities=29% Similarity=0.519 Sum_probs=326.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHH--HHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTK--IAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL 80 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~--L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (460)
++.||+++|+|++||++|++.||++ |++||++|||++++.+++.++... ...+.+++..+++++++.. . .+.
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~-~-~~~ 80 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDD-P-RAP 80 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCc-c-cCH
Confidence 3579999999999999999999999 559999999999999877664321 1234688887887776543 2 233
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCC
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLL 160 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
..++..+.+.+.+.++++++. .+||+||+|.+..|+..+|+++|||.+.+++..+..+..+.+.+.. .+..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~-------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~ 151 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEE-------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSF 151 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhc-------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCC
Confidence 345555555555556666655 6799999999999999999999999999998888877665543211 1111
Q ss_pred CCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCcccccc---CCCee
Q 012594 161 DSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDL---IPNIL 237 (460)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~---~p~~~ 237 (460)
+. . ...+....+|+++.+...+++. .+..... ..+...+.+..+....++.+++||+.++|...... .++++
T Consensus 152 ~~--~-~~~~~~~~~Pgl~~~~~~dl~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~ 226 (456)
T PLN02210 152 PD--L-EDLNQTVELPALPLLEVRDLPS-FMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVI 226 (456)
T ss_pred Cc--c-cccCCeeeCCCCCCCChhhCCh-hhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEE
Confidence 10 0 0001223578887777777663 2222211 11222222333345678999999999999876655 25799
Q ss_pred eeCccCCCC---CccCc--c---CCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012594 238 TIGPLLGRD---HLEHS--A---VNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVR 309 (460)
Q Consensus 238 ~vGp~~~~~---~~~~~--~---~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 309 (460)
.|||++... ....+ . ...|..+.+|.+|++.++++++|||+|||....+.+++++++.+++.++.+|||+++
T Consensus 227 ~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~ 306 (456)
T PLN02210 227 PIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIR 306 (456)
T ss_pred EEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999997421 10000 0 112455677999999988889999999999888999999999999999999999987
Q ss_pred CCCCccccCCCchhHHhhh-CCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHH
Q 012594 310 PDFMNKSHAKLPDGFVERV-SDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIF 388 (460)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~ 388 (460)
.... ...++.+.++. +++..+++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||++++
T Consensus 307 ~~~~----~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~ 382 (456)
T PLN02210 307 PKEK----AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLV 382 (456)
T ss_pred CCcc----ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHH
Confidence 4311 11234455554 477888899999999999999999999999999999999999999999999999999998
Q ss_pred hhhcceeEeecCC-CCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 389 DAWKIGLRFFPDE-NGIITRQEIQRQVKALLNDG---GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 389 ~~lg~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
+.+|+|+.+..++ .+.+++++|+++|+++|.++ ++|+||++|++..++++++||+|.+++++|++++.
T Consensus 383 ~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 383 DVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 7579999996421 24689999999999999876 49999999999999999999999999999999986
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.4e-62 Score=472.70 Aligned_cols=444 Identities=26% Similarity=0.413 Sum_probs=327.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC----CCCCCCcCccc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD----GLESHEADRRD 79 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~ 79 (460)
+.||+++|+|++||++|++.||+.|+.+|+.|||++|+.+...+..... ..+++++..+|. +++++.....+
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 6799999999999999999999999999999999999998877755421 113577766541 33332211111
Q ss_pred ----HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHh
Q 012594 80 ----LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLV 155 (460)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (460)
....+......+.+.+.++++.+ . .+++|||+|.+..|+..+|+++|||++.|+++.++....+.+++...
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~---~--~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH---P--SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC---C--CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 12222223334445555555542 1 46899999999999999999999999999999999888877754211
Q ss_pred hhcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC--
Q 012594 156 EAGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI-- 233 (460)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-- 233 (460)
.....+ ........+..+|+++.+...+++ .++............+.+.......++.+++||+.+||+......
T Consensus 160 ~~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 160 PTKINP--DDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccc--cccccccccCCCCCCCCcChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 100000 000000112357888777777776 222211111122333333333445778899999999998866542
Q ss_pred ----CCeeeeCccCCCCCccC---ccC-CCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEE
Q 012594 234 ----PNILTIGPLLGRDHLEH---SAV-NFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFL 305 (460)
Q Consensus 234 ----p~~~~vGp~~~~~~~~~---~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 305 (460)
++++.|||++....... ..+ ..+..++++.+||+.++++++|||||||....+.+++.+++.+++.++.+||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 57999999975321100 000 1111345799999999888999999999988899999999999999999999
Q ss_pred EEEcCCCCc-cccCCCchhHHhhhC-CCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhh
Q 012594 306 WVVRPDFMN-KSHAKLPDGFVERVS-DRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQN 383 (460)
Q Consensus 306 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~ 383 (460)
|+++..... .....+|++|.++.. .++++.+|+||.+||+|++|++||||||+||++||+++|||||++|++.||+.|
T Consensus 317 w~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 317 WCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred EEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 999743211 112357888877654 456667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 012594 384 RNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALL-NDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAIG 459 (460)
Q Consensus 384 a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 459 (460)
|+++++.+|+|+.+........+++++.++|++++ ++++||+||+++++..++++.+||+|.+++++|++.+...|
T Consensus 397 a~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 397 ASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 99987558999999532223468999999999999 67799999999999999999999999999999999999877
No 9
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.8e-62 Score=474.92 Aligned_cols=439 Identities=24% Similarity=0.416 Sum_probs=323.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCccchhHHh--hccCcccc--CCCCeEEEEcCCCCCCCCcCcc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHG--IKVTFVSTEHMHAKIT--ASMPQKAE--QSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rG--h~V~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
+||+++|+|++||++|++.||+.|+.+| ..|||++++.+..... +....... ..++++|+.+|.+..+.. ...
T Consensus 3 ~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~~ 81 (481)
T PLN02554 3 IELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-EDP 81 (481)
T ss_pred eEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-cch
Confidence 4999999999999999999999999998 8899999988754221 10000001 123699999986654221 111
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhc-C-CCCCc-cEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHh
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKS-N-DCEKI-SCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLV 155 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~-~-~~~~~-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (460)
.+...+ ..+...+++.++.+... . .+.+| +|||+|.++.|+..+|+++|||++.|+++.+.....+.+++...
T Consensus 82 ~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 TFQSYI----DNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 222222 33344455555444221 0 00233 89999999999999999999999999999999888877765432
Q ss_pred hhcCCCCCCCCCCCCcccccCCCC-CCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccc---
Q 012594 156 EAGLLDSNGNAMTDEPILLSEGTL-PWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACD--- 231 (460)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~--- 231 (460)
..+..+....++... ...+|+++ ++...+++. ..... .....+.........++.+++||+.+||.....
T Consensus 158 ~~~~~~~~~~~~~~~-~v~iPgl~~pl~~~dlp~-~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 158 DEKKYDVSELEDSEV-ELDVPSLTRPYPVKCLPS-VLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cccccCccccCCCCc-eeECCCCCCCCCHHHCCC-cccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 111001001111111 23578874 666666662 22211 122333444456778999999999999975443
Q ss_pred ----cCCCeeeeCccC-CCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEE
Q 012594 232 ----LIPNILTIGPLL-GRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLW 306 (460)
Q Consensus 232 ----~~p~~~~vGp~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 306 (460)
..|+++.|||+. ...... ......+.++.+|++.++++++|||||||+...+.+++++++.+++.++++|||
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred hcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 236899999994 332211 000124467999999988888999999999888999999999999999999999
Q ss_pred EEcCCCC-------c---cccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccc
Q 012594 307 VVRPDFM-------N---KSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPY 376 (460)
Q Consensus 307 ~~~~~~~-------~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~ 376 (460)
++..... . .....+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 309 SLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCc
Confidence 9975210 0 01123588998888999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHH-HHHhhhcceeEeecC--------CCCccCHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHhhcCCChHH
Q 012594 377 FADQYQNRN-YIFDAWKIGLRFFPD--------ENGIITRQEIQRQVKALLN-DGGIKANALKMKQMARKSLVEGGSSFR 446 (460)
Q Consensus 377 ~~dQ~~~a~-~v~~~lg~g~~~~~~--------~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~ 446 (460)
+.||+.||+ ++++ +|+|+.+... ..+.+++++|.++|+++|+ |++||+||+++++++++++++||++.+
T Consensus 389 ~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~ 467 (481)
T PLN02554 389 YAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHT 467 (481)
T ss_pred cccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 999999995 4666 8999998631 1246899999999999996 789999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 012594 447 NFESFVSQLKAI 458 (460)
Q Consensus 447 ~~~~~~~~l~~~ 458 (460)
++++|++++..+
T Consensus 468 ~l~~lv~~~~~~ 479 (481)
T PLN02554 468 ALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHhh
Confidence 999999999765
No 10
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.3e-61 Score=468.02 Aligned_cols=432 Identities=28% Similarity=0.485 Sum_probs=328.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL 80 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (460)
.+.||+++|+|++||++|+++||++|+.| ||+|||++++.+.+.+++... .++++|+.+|.+.+.......++
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~~~p~~~~~~~~~ 83 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPNVIPSELVRAADF 83 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCCCCCCccccccCH
Confidence 35799999999999999999999999999 999999999999887766421 24799999997654432123345
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCC
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLL 160 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
..++..+.+.+...++++++.+. .++|+||+|.++.|+..+|+++|||++.++++++.....+.+.+.....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 84 PGFLEAVMTKMEAPFEQLLDRLE-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 55555555556667777777642 3689999999999999999999999999999998776666554432211111
Q ss_pred CCCCCCC-CCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCcccccc-----CC
Q 012594 161 DSNGNAM-TDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDL-----IP 234 (460)
Q Consensus 161 ~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~-----~p 234 (460)
+.. ... .......+|+++.+...+++ .++... .......+........+++.+++||+.+||+..... .+
T Consensus 159 ~~~-~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~ 234 (459)
T PLN02448 159 PVE-LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPF 234 (459)
T ss_pred CCc-cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCC
Confidence 100 000 11223357877777666666 322221 112223334444456678899999999999874432 34
Q ss_pred CeeeeCccCCCCCccCccCC--CCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 012594 235 NILTIGPLLGRDHLEHSAVN--FWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDF 312 (460)
Q Consensus 235 ~~~~vGp~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 312 (460)
+++.|||+............ ....+.++.+|++.++++++|||||||......+++++++.+++.++.+|||++...
T Consensus 235 ~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~- 313 (459)
T PLN02448 235 PVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE- 313 (459)
T ss_pred ceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc-
Confidence 78999999753211100000 011234788999998888999999999988889999999999999999999987632
Q ss_pred CccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhc
Q 012594 313 MNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK 392 (460)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg 392 (460)
...+.+..++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|
T Consensus 314 --------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 385 (459)
T PLN02448 314 --------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWK 385 (459)
T ss_pred --------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhC
Confidence 123444445788899999999999999999999999999999999999999999999999999999997679
Q ss_pred ceeEeecC--CCCccCHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012594 393 IGLRFFPD--ENGIITRQEIQRQVKALLNDG-----GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKA 457 (460)
Q Consensus 393 ~g~~~~~~--~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 457 (460)
+|+.+... +.+.+++++|+++++++|.++ +||+||++|++++++++.+||+|.+++++|++++.+
T Consensus 386 ~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 386 IGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred ceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 99998631 123579999999999999763 799999999999999999999999999999999875
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.7e-61 Score=462.31 Aligned_cols=428 Identities=29% Similarity=0.469 Sum_probs=324.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC----CCCCCCcCc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD----GLESHEADR 77 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~ 77 (460)
.+.||+++|+|++||++|++.||+.|+ .+|++|||++++.+...+.+.... .+++++..+|. ++++..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~~glp~~~--- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDISGLVDPS--- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCccccCCCCCC---
Confidence 357999999999999999999999998 789999999999887655333211 12688888884 332111
Q ss_pred ccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhh
Q 012594 78 RDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEA 157 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (460)
.+....+......+.+.++++++.+ . .+|++||+|.+..|+..+|+++|||++.|+++.+.....+.+.+.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 77 AHVVTKIGVIMREAVPTLRSKIAEM-H----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHhc-C----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 1222223333344556677777664 1 4689999999999999999999999999999999877665554432111
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC----
Q 012594 158 GLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI---- 233 (460)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~---- 233 (460)
.... ..... ....+|+++.+...+++. .+.... ......+.+.......++.+++||+.+||+......
T Consensus 152 --~~~~-~~~~~-~~~~iPg~~~l~~~dlp~-~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~ 224 (481)
T PLN02992 152 --IKEE-HTVQR-KPLAMPGCEPVRFEDTLD-AYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPK 224 (481)
T ss_pred --cccc-cccCC-CCcccCCCCccCHHHhhH-hhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcc
Confidence 0000 00001 123688888777776662 121111 112233334445567899999999999998766532
Q ss_pred -------CCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEE
Q 012594 234 -------PNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLW 306 (460)
Q Consensus 234 -------p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 306 (460)
+.++.|||+....... ..+.++.+||+.++++++|||||||+..++.+++++++.+|+.++.+|||
T Consensus 225 ~~~~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 225 LLGRVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ccccccCCceEEecCccCCcCCC-------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 4699999997542111 23457999999988888999999999999999999999999999999999
Q ss_pred EEcCCCCc---------------c-ccCCCchhHHhhhCCCc-EEeeccCchhhcCCCcccceeeccChhhhhHhhhcCC
Q 012594 307 VVRPDFMN---------------K-SHAKLPDGFVERVSDRG-KLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGV 369 (460)
Q Consensus 307 ~~~~~~~~---------------~-~~~~~~~~~~~~~~~~v-~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~Gv 369 (460)
++....+. + ....+|++|.++..++. .+.+|+||.+||+|+++++||||||+||++||+++||
T Consensus 298 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GV 377 (481)
T PLN02992 298 VVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGV 377 (481)
T ss_pred EEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCC
Confidence 99632110 0 01247889988876555 5569999999999999999999999999999999999
Q ss_pred ceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhh--cCCCh
Q 012594 370 PFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG---GIKANALKMKQMARKSLV--EGGSS 444 (460)
Q Consensus 370 P~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~--~~g~~ 444 (460)
|||++|++.||+.||+++++.+|+|+.++.. ++.+++++|+++|+++|.++ ++|+++++++++++++++ +||+|
T Consensus 378 P~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS 456 (481)
T PLN02992 378 PMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVA 456 (481)
T ss_pred CEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999996338999999641 13589999999999999764 799999999999999995 59999
Q ss_pred HHHHHHHHHHHHh
Q 012594 445 FRNFESFVSQLKA 457 (460)
Q Consensus 445 ~~~~~~~~~~l~~ 457 (460)
.+++++|++.+..
T Consensus 457 ~~~l~~~v~~~~~ 469 (481)
T PLN02992 457 HESLCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.6e-61 Score=465.44 Aligned_cols=438 Identities=24% Similarity=0.431 Sum_probs=328.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC----CEEEEEeCccchh----HHhhccCccccCCCCeEEEEcCCCCCCCCc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHG----IKVTFVSTEHMHA----KITASMPQKAEQSSLITMVSIPDGLESHEA 75 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rG----h~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 75 (460)
+.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.. .+............++.|..+|.+..+.
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~-- 80 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT-- 80 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC--
Confidence 56999999999999999999999999997 7999999876432 3332211111111269999998654221
Q ss_pred CcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHh
Q 012594 76 DRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLV 155 (460)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (460)
...+...++..+...+.+.++++++.+ . .+++|||+|.+..|+..+|+++|||++.|+++.+.....+.+++...
T Consensus 81 ~~e~~~~~~~~~~~~~~~~l~~~L~~l-~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 DAAGVEEFISRYIQLHAPHVRAAIAGL-S----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred ccccHHHHHHHHHHhhhHHHHHHHHhc-C----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 112333444545556677788887764 1 35799999999999999999999999999999998887777654321
Q ss_pred hhcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC--
Q 012594 156 EAGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI-- 233 (460)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-- 233 (460)
.. .+. .......++ .+|+++.+...+++. ...... +. ....+....+...+++.+++||+.+||+......
T Consensus 156 ~~--~~~-~~~~~~~~~-~iPGlp~l~~~dlp~-~~~~~~-~~-~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 156 EE--VAV-EFEEMEGAV-DVPGLPPVPASSLPA-PVMDKK-SP-NYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred cc--ccC-cccccCcce-ecCCCCCCChHHCCc-hhcCCC-cH-HHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 11 000 011111222 478888777777773 222211 11 1122223334567889999999999998655432
Q ss_pred ---------CCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCE
Q 012594 234 ---------PNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPF 304 (460)
Q Consensus 234 ---------p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 304 (460)
++++.|||++...... .....+.++.+||+.++++++|||+|||+...+.+++.+++.+++.++.+|
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~f 304 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRF 304 (480)
T ss_pred ccccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCE
Confidence 5799999997432111 112345679999999988899999999998889999999999999999999
Q ss_pred EEEEcCCCCc--------cccCCCchhHHhhhCCCcEEe-eccCchhhcCCCcccceeeccChhhhhHhhhcCCceeecc
Q 012594 305 LWVVRPDFMN--------KSHAKLPDGFVERVSDRGKLV-EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWP 375 (460)
Q Consensus 305 i~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~-~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P 375 (460)
||++...... +....+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 305 lWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 305 LWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 9999753210 111237888888776666655 9999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHhhhcceeEeecCC--CCccCHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHhhcCCChHHHH
Q 012594 376 YFADQYQNRNYIFDAWKIGLRFFPDE--NGIITRQEIQRQVKALLNDG-----GIKANALKMKQMARKSLVEGGSSFRNF 448 (460)
Q Consensus 376 ~~~dQ~~~a~~v~~~lg~g~~~~~~~--~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~ 448 (460)
++.||+.||+++++.+|+|+.+..++ ++.+++++|+++|+++|.++ .+|+||++|++++++++++||+|.+++
T Consensus 385 ~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l 464 (480)
T PLN00164 385 LYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAAL 464 (480)
T ss_pred ccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999998765479999986421 13479999999999999763 489999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 012594 449 ESFVSQLKAIG 459 (460)
Q Consensus 449 ~~~~~~l~~~~ 459 (460)
++|++++....
T Consensus 465 ~~~v~~~~~~~ 475 (480)
T PLN00164 465 QRLAREIRHGA 475 (480)
T ss_pred HHHHHHHHhcc
Confidence 99999998764
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-60 Score=458.37 Aligned_cols=438 Identities=30% Similarity=0.470 Sum_probs=321.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcC----CCCCCCCcC
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIP----DGLESHEAD 76 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 76 (460)
|+.+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+..... ...++++++.+| ++++++...
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~ 79 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAES 79 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCccc
Confidence 3456799999999999999999999999999999999999988776653211 111358898888 556543212
Q ss_pred cccHH----HHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhh
Q 012594 77 RRDLH----KVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAP 152 (460)
Q Consensus 77 ~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (460)
..++. .++....+.+.+.++++++. .+++|||+|.+..|+..+|+++|||++.++++++.....+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~ 152 (472)
T PLN02670 80 STDVPYTKQQLLKKAFDLLEPPLTTFLET-------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPS 152 (472)
T ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHh-------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhH
Confidence 22221 23444445567777777766 67899999999999999999999999999999888776655433
Q ss_pred hHhhhcCCCCCCCCCCCCcccccCCCCC------CccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccC
Q 012594 153 KLVEAGLLDSNGNAMTDEPILLSEGTLP------WKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELD 226 (460)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 226 (460)
.....+..+ ...+....+|++.+ +...+++ .+.............+.+......+++.+++||+.+||
T Consensus 153 ~~~~~~~~~-----~~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE 226 (472)
T PLN02670 153 SLMEGGDLR-----STAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFE 226 (472)
T ss_pred hhhhcccCC-----CccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHh
Confidence 222222111 11111112333221 2223443 22211111111112222333456678999999999999
Q ss_pred ccccccC-----CCeeeeCccCCCC-CccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 012594 227 PPACDLI-----PNILTIGPLLGRD-HLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL 300 (460)
Q Consensus 227 ~~~~~~~-----p~~~~vGp~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~ 300 (460)
+...... ++++.|||+.... ....+.......+.++.+||+.++++++|||||||+..++.+++.+++.+|+.+
T Consensus 227 ~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s 306 (472)
T PLN02670 227 PEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKS 306 (472)
T ss_pred HHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 8877543 5799999997531 110000000011257899999998888999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCc--cccCCCchhHHhhhCCCcEE-eeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeecccc
Q 012594 301 QQPFLWVVRPDFMN--KSHAKLPDGFVERVSDRGKL-VEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYF 377 (460)
Q Consensus 301 ~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~-~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~ 377 (460)
+++|||++...... .....+|++|.++..++..+ .+|+||.+||+|+++++||||||+||++||+++|||||++|++
T Consensus 307 ~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 307 ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 99999999753111 11235889998887777665 5999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHhhhcceeEeecCC-CCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012594 378 ADQYQNRNYIFDAWKIGLRFFPDE-NGIITRQEIQRQVKALLNDG---GIKANALKMKQMARKSLVEGGSSFRNFESFVS 453 (460)
Q Consensus 378 ~dQ~~~a~~v~~~lg~g~~~~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 453 (460)
.||+.||+++++ +|+|+.+...+ .+.+++++|+++|+++|.++ +||+||+++++.+++ .+...++++.|++
T Consensus 387 ~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~ 461 (472)
T PLN02670 387 NEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVH 461 (472)
T ss_pred hccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHH
Confidence 999999999998 79999996422 24589999999999999876 799999999999998 6888899999999
Q ss_pred HHHhcC
Q 012594 454 QLKAIG 459 (460)
Q Consensus 454 ~l~~~~ 459 (460)
.|.+..
T Consensus 462 ~l~~~~ 467 (472)
T PLN02670 462 YLRENR 467 (472)
T ss_pred HHHHhc
Confidence 998753
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3e-60 Score=463.59 Aligned_cols=438 Identities=28% Similarity=0.449 Sum_probs=315.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccc----cCCCCeEEEEcC---CCCCCCCcC
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKA----EQSSLITMVSIP---DGLESHEAD 76 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~---~~~~~~~~~ 76 (460)
+.||+++|+|++||++|++.||+.|+.|||+|||++++.+...+++.+.... .....+.+.++| .+++++...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 4599999999999999999999999999999999999998877765532110 001134445555 344433211
Q ss_pred c--------ccHHHHHHHHHh---hchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHH
Q 012594 77 R--------RDLHKVRQSMLT---VMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASL 145 (460)
Q Consensus 77 ~--------~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 145 (460)
. .....++..+.. .+...++++++. .+||+||+|.++.|+..+|+++|||++.|+++.++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET-------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 1 012222333322 223333333333 6899999999999999999999999999999988776
Q ss_pred HHHHhhhhHhhhcCCCCCCCCCCCCcccccCCCCC---CccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccc
Q 012594 146 ALVLHAPKLVEAGLLDSNGNAMTDEPILLSEGTLP---WKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSF 222 (460)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (460)
.....+....+... ....... ..+|+++. +...++. . ......+...+....+...+++.+++||+
T Consensus 158 ~~~~~~~~~~~~~~-----~~~~~~~-~~~pg~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~ 226 (482)
T PLN03007 158 CASYCIRVHKPQKK-----VASSSEP-FVIPDLPGDIVITEEQIN-D----ADEESPMGKFMKEVRESEVKSFGVLVNSF 226 (482)
T ss_pred HHHHHHHhcccccc-----cCCCCce-eeCCCCCCccccCHHhcC-C----CCCchhHHHHHHHHHhhcccCCEEEEECH
Confidence 55443321111000 1111111 13666652 1122222 1 11112233334444445678899999999
Q ss_pred cccCccccccC-----CCeeeeCccCCCCCccC---ccC-CCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHH
Q 012594 223 YELDPPACDLI-----PNILTIGPLLGRDHLEH---SAV-NFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEEL 293 (460)
Q Consensus 223 ~~le~~~~~~~-----p~~~~vGp~~~~~~~~~---~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 293 (460)
++||++..+.. ..+++|||+........ ..+ ..+..+.++.+|++.++++++|||||||+...+.+.+.++
T Consensus 227 ~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~ 306 (482)
T PLN03007 227 YELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEI 306 (482)
T ss_pred HHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHH
Confidence 99998755544 36899999764321100 000 1112346789999999889999999999988889999999
Q ss_pred HHHHHhCCCCEEEEEcCCCCc-cccCCCchhHHhhh-CCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCce
Q 012594 294 ALGLESLQQPFLWVVRPDFMN-KSHAKLPDGFVERV-SDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPF 371 (460)
Q Consensus 294 ~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~ 371 (460)
+.+++.++.+|||+++..... +....+|++|.++. +.|+++.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 307 ~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~ 386 (482)
T PLN03007 307 AAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPM 386 (482)
T ss_pred HHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCe
Confidence 999999999999999854211 11234788888765 5677788999999999999999999999999999999999999
Q ss_pred eeccccchhhhhHHHHHhhhcceeEeecC-----CCCccCHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHhhcCCC
Q 012594 372 LCWPYFADQYQNRNYIFDAWKIGLRFFPD-----ENGIITRQEIQRQVKALLNDG---GIKANALKMKQMARKSLVEGGS 443 (460)
Q Consensus 372 i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~-----~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~ 443 (460)
|++|++.||+.||+++++.+++|+.+... +...+++++|+++|+++|.++ +||+||+++++.+++++.+||+
T Consensus 387 v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGs 466 (482)
T PLN03007 387 VTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGS 466 (482)
T ss_pred eeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999987545666665311 124689999999999999887 8999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC
Q 012594 444 SFRNFESFVSQLKAIG 459 (460)
Q Consensus 444 ~~~~~~~~~~~l~~~~ 459 (460)
|.+++++|++.+.+++
T Consensus 467 S~~~l~~~v~~~~~~~ 482 (482)
T PLN03007 467 SFNDLNKFMEELNSRK 482 (482)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998764
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-60 Score=454.60 Aligned_cols=430 Identities=27% Similarity=0.463 Sum_probs=316.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEE--EeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCc--Cc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHG--IKVTF--VSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEA--DR 77 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rG--h~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~ 77 (460)
+-||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+...........++++|..+|.+.+.... ..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 55666 44444333222211111112236999999876532211 11
Q ss_pred ccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhh
Q 012594 78 RDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEA 157 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (460)
.+...++..+...+...+.++++.+.. . .+++|||+|.+..|+..+|+++|||++.|+++.++....+.+++.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~-~--~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSR-N--FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCC-C--CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 122333333444566777888877522 1 3459999999999999999999999999999999888877765432110
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC----
Q 012594 158 GLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI---- 233 (460)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~---- 233 (460)
.+. ....+.....+|+++.+...+++ .+..... ......+......+..++.+++||+.+||+......
T Consensus 160 --~~~--~~~~~~~~v~iPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 160 --TPG--KNLKDIPTVHIPGVPPMKGSDMP-KAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred --ccc--cccccCCeecCCCCCCCChHHCc-hhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC
Confidence 000 00011122367888887777777 3332221 122233344444567789999999999998655422
Q ss_pred --CCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012594 234 --PNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPD 311 (460)
Q Consensus 234 --p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 311 (460)
++++.|||+........ ... ..+.++.+||+.++++++|||||||+..++.+++++++.+|+.++.+|||++...
T Consensus 233 ~~~~v~~vGPl~~~~~~~~--~~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~ 309 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIED--RND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNP 309 (451)
T ss_pred CCCCEEEEeeeccCccccc--ccc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 47999999975321110 011 1245699999999888999999999999999999999999999999999999853
Q ss_pred CCcc----ccC-CCchhHHhhhCC-CcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHH
Q 012594 312 FMNK----SHA-KLPDGFVERVSD-RGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRN 385 (460)
Q Consensus 312 ~~~~----~~~-~~~~~~~~~~~~-~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~ 385 (460)
...+ ... .+|++|.++..+ |+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 310 ~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~ 389 (451)
T PLN03004 310 PELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRV 389 (451)
T ss_pred ccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHH
Confidence 1100 112 278889888754 5667799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHH
Q 012594 386 YIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFR 446 (460)
Q Consensus 386 ~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 446 (460)
++++.+|+|+.++..+.+.+++++|+++|+++|+|++||+|++++++..++++++||+|.+
T Consensus 390 ~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 390 MIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9985479999997522235799999999999999999999999999999999999999864
No 16
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.6e-60 Score=455.54 Aligned_cols=443 Identities=27% Similarity=0.479 Sum_probs=320.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcC-----CCCCCCCc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIP-----DGLESHEA 75 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~ 75 (460)
|.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.............++|+.+| ++++++..
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 5566899999999999999999999999999999999999988766654322111111248898887 46655421
Q ss_pred Ccc-----cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHh
Q 012594 76 DRR-----DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLH 150 (460)
Q Consensus 76 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 150 (460)
... ++...+......+.+.++++++.. . .++|+||+|.++.|+..+|+.+|||++.|+++.++....+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~--~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K--PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C--CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 111 122222223334556677776642 1 568999999999999999999999999999998887665443
Q ss_pred hhhHhhhcCCCCCCCCCCCCcccccCCCCC---CccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCc
Q 012594 151 APKLVEAGLLDSNGNAMTDEPILLSEGTLP---WKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDP 227 (460)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~ 227 (460)
+....... + .+... ....+|+++. +...+++..+.... ... .......+....++.+++||+.+||+
T Consensus 160 ~~~~~~~~--~---~~~~~-~~~~iPg~p~~~~l~~~dlp~~~~~~~-~~~---~~~~~~~~~~~~a~~vlvNTf~eLE~ 229 (491)
T PLN02534 160 IRLHNAHL--S---VSSDS-EPFVVPGMPQSIEITRAQLPGAFVSLP-DLD---DVRNKMREAESTAFGVVVNSFNELEH 229 (491)
T ss_pred HHHhcccc--c---CCCCC-ceeecCCCCccccccHHHCChhhcCcc-cHH---HHHHHHHhhcccCCEEEEecHHHhhH
Confidence 32111100 0 11111 2235777763 44445542111111 111 11111111224577999999999998
Q ss_pred ccccc-----CCCeeeeCccCCCCCccCcc---CCCCC-CCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHH
Q 012594 228 PACDL-----IPNILTIGPLLGRDHLEHSA---VNFWP-EDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLE 298 (460)
Q Consensus 228 ~~~~~-----~p~~~~vGp~~~~~~~~~~~---~~~~~-~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 298 (460)
..... .++++.|||+........+. +.... .+.++..||+.++++++|||+|||......+++.+++.+|+
T Consensus 230 ~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~ 309 (491)
T PLN02534 230 GCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLE 309 (491)
T ss_pred HHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 65542 25799999997532110000 00111 23469999999988899999999999999999999999999
Q ss_pred hCCCCEEEEEcCCCCc-c-ccCCCchhHHhhh-CCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeecc
Q 012594 299 SLQQPFLWVVRPDFMN-K-SHAKLPDGFVERV-SDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWP 375 (460)
Q Consensus 299 ~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~-~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P 375 (460)
.++.+|||++...... + ....+|++|.++. +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 310 ~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P 389 (491)
T PLN02534 310 ASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP 389 (491)
T ss_pred hCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc
Confidence 9999999999843111 1 1113578888764 56677779999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHhhhcceeEeecC-------CC--C-ccCHHHHHHHHHHHhc---C--hHHHHHHHHHHHHHHHHhhc
Q 012594 376 YFADQYQNRNYIFDAWKIGLRFFPD-------EN--G-IITRQEIQRQVKALLN---D--GGIKANALKMKQMARKSLVE 440 (460)
Q Consensus 376 ~~~dQ~~~a~~v~~~lg~g~~~~~~-------~~--~-~~~~~~l~~~i~~~l~---~--~~~~~~a~~l~~~~~~~~~~ 440 (460)
++.||+.||+++++.+|+|+.+... +. + .+++++|+++|+++|. + +++|+||++|+++.++++.+
T Consensus 390 ~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~ 469 (491)
T PLN02534 390 LFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMEL 469 (491)
T ss_pred ccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998779999988421 00 1 3799999999999995 2 37999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 012594 441 GGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 441 ~g~~~~~~~~~~~~l~~~ 458 (460)
||+|.+++++|++++...
T Consensus 470 GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 470 GGSSHINLSILIQDVLKQ 487 (491)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 999999999999998753
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.9e-60 Score=454.07 Aligned_cols=416 Identities=22% Similarity=0.405 Sum_probs=306.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEc--C--CCCCCCCcC
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSI--P--DGLESHEAD 76 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~--~~~~~~~~~ 76 (460)
|..++||+++|+|++||++|++.||+.|+++||+|||++++.+...+.+.+. ...++++..+ + ++++.+...
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCccCCCCCccc
Confidence 6678899999999999999999999999999999999999988777655421 1124556554 3 344443212
Q ss_pred cccHHHH----HHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhh
Q 012594 77 RRDLHKV----RQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAP 152 (460)
Q Consensus 77 ~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (460)
..++... +......+.+.++++++. .++|+||+| ++.|+..+|+.+|||++.++++.+.... +.+++
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~-------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA-------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh-------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC
Confidence 2222211 122223344445555544 779999999 5789999999999999999999887543 33321
Q ss_pred hHhhhcCCCCCCCCCCCCcccccCCCCC----CccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCcc
Q 012594 153 KLVEAGLLDSNGNAMTDEPILLSEGTLP----WKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPP 228 (460)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~ 228 (460)
. .. . . ..+|+++. +...+++ .+ . .....+........+...+++.+++||+.+||+.
T Consensus 148 ~----~~-----~----~--~~~pglp~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~ 208 (442)
T PLN02208 148 G----GK-----L----G--VPPPGYPSSKVLFRENDAH-AL-A--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGK 208 (442)
T ss_pred c----cc-----c----C--CCCCCCCCcccccCHHHcC-cc-c--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHH
Confidence 0 00 0 0 01355553 2233333 11 0 1111122222222235568999999999999987
Q ss_pred cccc-----CCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCC
Q 012594 229 ACDL-----IPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQP 303 (460)
Q Consensus 229 ~~~~-----~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 303 (460)
.... .|+++.|||++...... .+.+.++.+||+.++++++|||||||...++.+++.+++.+++..+.+
T Consensus 209 ~~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~p 282 (442)
T PLN02208 209 FCDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLP 282 (442)
T ss_pred HHHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCc
Confidence 5543 37899999998653211 134678999999998889999999999988999999999888888888
Q ss_pred EEEEEcCCCC-ccccCCCchhHHhhhC-CCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhh
Q 012594 304 FLWVVRPDFM-NKSHAKLPDGFVERVS-DRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQY 381 (460)
Q Consensus 304 ~i~~~~~~~~-~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~ 381 (460)
++|+...+.. ......+|++|.++.. .|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+
T Consensus 283 f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~ 362 (442)
T PLN02208 283 FLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQV 362 (442)
T ss_pred EEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhH
Confidence 8888874311 1122358889988764 4566669999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 382 QNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG-----GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 382 ~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
.||+++++.+|+|+.+..++++.+++++|+++|+++++++ ++|+|++++++.+.+ +|+|.+++++|++++.
T Consensus 363 ~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~ 438 (442)
T PLN02208 363 LFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQ 438 (442)
T ss_pred HHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHH
Confidence 9999877657999999753223489999999999999765 399999999999854 7899999999999997
Q ss_pred hc
Q 012594 457 AI 458 (460)
Q Consensus 457 ~~ 458 (460)
+.
T Consensus 439 ~~ 440 (442)
T PLN02208 439 EY 440 (442)
T ss_pred Hh
Confidence 53
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.8e-60 Score=460.69 Aligned_cols=447 Identities=24% Similarity=0.421 Sum_probs=321.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCC---CEEEEEeCccchh-HHhhccCccccCCCCeEEEEcCCCCCCCCcC--
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEHG---IKVTFVSTEHMHA-KITASMPQKAEQSSLITMVSIPDGLESHEAD-- 76 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~rG---h~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 76 (460)
++.||+++|+|++||++|++.||+.|+.+| +.||++++..+.. .............++++|..+|.+..+....
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 467999999999999999999999999998 3567776543321 1111000001122369999998654221100
Q ss_pred cccHHHHHHHHHhhchHHHHHHHHHHhhcC---CCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhh
Q 012594 77 RRDLHKVRQSMLTVMPGCLRNLIEKVNKSN---DCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPK 153 (460)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 153 (460)
.......+..+...+...+++.++.+.... +..+++|||+|.+..|+..+|+++|||++.|+++.+.....+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 111212333344455556666666543210 00145999999999999999999999999999999988777766543
Q ss_pred HhhhcCCCCCCCCCCCCcccccCCCC-CCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCcccccc
Q 012594 154 LVEAGLLDSNGNAMTDEPILLSEGTL-PWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDL 232 (460)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 232 (460)
.... ..........+++ ..+|+++ .+...+++ ..+..... ...+....+....++.+++||+.+||+.....
T Consensus 162 ~~~~-~~~~~~~~~~~~~-~~iPgl~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 162 RHRK-TASEFDLSSGEEE-LPIPGFVNSVPTKVLP-PGLFMKES----YEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred hccc-cccccccCCCCCe-eECCCCCCCCChhhCc-hhhhCcch----HHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 2111 0000000011122 3578873 46666655 22211111 12233334456788999999999999876543
Q ss_pred -------CCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEE
Q 012594 233 -------IPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFL 305 (460)
Q Consensus 233 -------~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 305 (460)
.|+++.|||++....... .......+.++.+||+.++.+++|||+|||+...+.+++.+++.+++.++.+||
T Consensus 235 l~~~~~~~p~v~~vGpl~~~~~~~~-~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~fl 313 (475)
T PLN02167 235 FSRLPENYPPVYPVGPILSLKDRTS-PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFL 313 (475)
T ss_pred HHhhcccCCeeEEeccccccccccC-CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEE
Confidence 268999999986432110 000011235799999999888999999999988899999999999999999999
Q ss_pred EEEcCCCCc--cccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhh
Q 012594 306 WVVRPDFMN--KSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQN 383 (460)
Q Consensus 306 ~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~ 383 (460)
|+++..... .....+|++|.++..+++++++|+||.+||+|++|++||||||+||++||+++|||||++|++.||+.|
T Consensus 314 w~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 393 (475)
T PLN02167 314 WSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLN 393 (475)
T ss_pred EEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhh
Confidence 998753211 112347889988888888889999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHhhhcceeEeecC---C-CCccCHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012594 384 RNY-IFDAWKIGLRFFPD---E-NGIITRQEIQRQVKALLNDG-GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKA 457 (460)
Q Consensus 384 a~~-v~~~lg~g~~~~~~---~-~~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 457 (460)
|++ +++ +|+|+.+... + ...+++++|+++|+++|.++ +||+||+++++++++++++||+|.+++++|++++..
T Consensus 394 a~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 394 AFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 987 555 8999998642 1 13579999999999999765 799999999999999999999999999999999875
Q ss_pred c
Q 012594 458 I 458 (460)
Q Consensus 458 ~ 458 (460)
-
T Consensus 473 ~ 473 (475)
T PLN02167 473 D 473 (475)
T ss_pred c
Confidence 3
No 19
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.8e-59 Score=447.83 Aligned_cols=434 Identities=26% Similarity=0.466 Sum_probs=325.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCccchhHHh-hccCccccCCCCeEEEEcCCCCCCCC-cCcccH
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEH-GIKVTFVSTEHMHAKIT-ASMPQKAEQSSLITMVSIPDGLESHE-ADRRDL 80 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~r-Gh~V~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 80 (460)
+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. +..........++++..+|....++. ....+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 5699999999999999999999999977 99999999887654431 11111111112599999984332210 011133
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCc-eEEEcccchHHHHHHHhhhhHhhhcC
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIA-RAAVIPYAPASLALVLHAPKLVEAGL 159 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
...+......+.+.++++++.+. .+++|||+|.+..|+..+|+++||| .++++++.++....+.++|.... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~--~ 155 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT--V 155 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--c
Confidence 33344444567778888887742 3679999999999999999999999 58888888877766666543211 1
Q ss_pred CCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC------
Q 012594 160 LDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI------ 233 (460)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~------ 233 (460)
.... ......+ ..+|+++.+...+++..+.. ... .. ...+....+....++.+++||+.+||+......
T Consensus 156 ~~~~-~~~~~~~-~~vPg~p~l~~~dlp~~~~~-~~~-~~-~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~ 230 (470)
T PLN03015 156 VEGE-YVDIKEP-LKIPGCKPVGPKELMETMLD-RSD-QQ-YKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMEL 230 (470)
T ss_pred cccc-cCCCCCe-eeCCCCCCCChHHCCHhhcC-CCc-HH-HHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccc
Confidence 1110 0111122 35899988888887732221 111 11 222234444577899999999999998755432
Q ss_pred -----CCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEE
Q 012594 234 -----PNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVV 308 (460)
Q Consensus 234 -----p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 308 (460)
+.++.|||+...... ...+.++.+||+.++++++|||+|||...++.+++.+++.+|+.++.+|||++
T Consensus 231 ~~~~~~~v~~VGPl~~~~~~-------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~ 303 (470)
T PLN03015 231 NRVMKVPVYPIGPIVRTNVH-------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVL 303 (470)
T ss_pred ccccCCceEEecCCCCCccc-------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 469999999843211 11234799999999888999999999999999999999999999999999999
Q ss_pred cCCCC--------cc-ccCCCchhHHhhhCCCcEE-eeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccc
Q 012594 309 RPDFM--------NK-SHAKLPDGFVERVSDRGKL-VEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFA 378 (460)
Q Consensus 309 ~~~~~--------~~-~~~~~~~~~~~~~~~~v~~-~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~ 378 (460)
..... .+ ....+|++|.++..++..+ .+|+||.+||+|+++++||||||+||++||+++|||||++|++.
T Consensus 304 r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~ 383 (470)
T PLN03015 304 RRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYA 383 (470)
T ss_pred ecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEeccccc
Confidence 63210 00 1225788998888777754 59999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHhhhcceeEeec-CCCCccCHHHHHHHHHHHhc---C--hHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012594 379 DQYQNRNYIFDAWKIGLRFFP-DENGIITRQEIQRQVKALLN---D--GGIKANALKMKQMARKSLVEGGSSFRNFESFV 452 (460)
Q Consensus 379 dQ~~~a~~v~~~lg~g~~~~~-~~~~~~~~~~l~~~i~~~l~---~--~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 452 (460)
||+.||+++++.+|+|+.+.. ...+.+++++|+++|+++|. + +++|+||++|+++.++++++||+|.+++++|+
T Consensus 384 DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~ 463 (470)
T PLN03015 384 EQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWA 463 (470)
T ss_pred chHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999655899999952 11246899999999999994 2 37999999999999999999999999999999
Q ss_pred HHHH
Q 012594 453 SQLK 456 (460)
Q Consensus 453 ~~l~ 456 (460)
+.+.
T Consensus 464 ~~~~ 467 (470)
T PLN03015 464 KRCY 467 (470)
T ss_pred Hhcc
Confidence 8863
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-59 Score=445.47 Aligned_cols=418 Identities=25% Similarity=0.427 Sum_probs=312.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcC--CCCCCCCcCcccH-
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIP--DGLESHEADRRDL- 80 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~- 80 (460)
++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ........+.+..+| ++++++.....++
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 57999999999999999999999999999999999999887665442 100111237777777 5555442121111
Q ss_pred ---HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhh
Q 012594 81 ---HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEA 157 (460)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (460)
...+....+.+.+.++++++. .++|+||+|. ..|+..+|+++|||++.++++.+.....+.+ + .
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~-------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~ 149 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA-------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----G 149 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh-------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----c
Confidence 122333333456677777766 6789999995 7899999999999999999999977665532 1 0
Q ss_pred cCCCCCCCCCCCCcccccCCCCC----CccccCCCCCCC--CCcchhHHHHHHHHHHhhcccccEEEEccccccCccccc
Q 012594 158 GLLDSNGNAMTDEPILLSEGTLP----WKKKEYGWCFPS--QPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACD 231 (460)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~ 231 (460)
+. .. ..+|++|. +...+++. +.. ...........+....+....++.+++||+.+||+....
T Consensus 150 ~~-----~~------~~~pglp~~~v~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~ 217 (453)
T PLN02764 150 GE-----LG------VPPPGYPSSKVLLRKQDAYT-MKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCD 217 (453)
T ss_pred cc-----CC------CCCCCCCCCcccCcHhhCcc-hhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHH
Confidence 00 00 11255552 33333332 111 111111222333333345677899999999999987665
Q ss_pred cC-----CCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEE
Q 012594 232 LI-----PNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLW 306 (460)
Q Consensus 232 ~~-----p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 306 (460)
.. ++++.|||++...... ...+.++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|
T Consensus 218 ~~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflw 291 (453)
T PLN02764 218 YIEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLV 291 (453)
T ss_pred HHHhhcCCcEEEeccCccCcccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEE
Confidence 43 5699999997543110 013467999999999999999999999889999999999999999999999
Q ss_pred EEcCCCCc-cccCCCchhHHhhhCCCcEEe-eccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhH
Q 012594 307 VVRPDFMN-KSHAKLPDGFVERVSDRGKLV-EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNR 384 (460)
Q Consensus 307 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a 384 (460)
++...... .....+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||
T Consensus 292 v~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na 371 (453)
T PLN02764 292 AVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNT 371 (453)
T ss_pred EEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHH
Confidence 99853111 112458999998877776655 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 385 NYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG-----GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 385 ~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
+++++.+|+|+.+..++.+.+++++|+++++++|+++ ++|++++++++++++ +|+|.+++++|++++...
T Consensus 372 ~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 372 RLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHh
Confidence 9997547999998542113689999999999999764 389999999999976 899999999999998764
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.7e-59 Score=445.61 Aligned_cols=416 Identities=25% Similarity=0.405 Sum_probs=305.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcC----CCCCCCCcC
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIP----DGLESHEAD 76 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 76 (460)
|.++.||+++|+|++||++|++.||+.|+++|++|||++++.+...++.... ...+++|..++ ++++++...
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcCCCCCcccc
Confidence 7888999999999999999999999999999999999999988776654421 11247775543 455544212
Q ss_pred cccHHH----HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhh
Q 012594 77 RRDLHK----VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAP 152 (460)
Q Consensus 77 ~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (460)
..++.. .+......+.+.++++++. .+||+||+|. +.|+..+|+++|||++.|+++.+.....+.+..
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~-------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~ 148 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA-------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR 148 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc-------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH
Confidence 222211 1122222333444444443 6789999995 889999999999999999999998776655411
Q ss_pred hHhhhcCCCCCCCCCCCCcccccCCCCCC----ccccCCC-CCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCc
Q 012594 153 KLVEAGLLDSNGNAMTDEPILLSEGTLPW----KKKEYGW-CFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDP 227 (460)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~ 227 (460)
.. . .. .+|+++.. ...+... .++. . ....+.+..+...+++.+++||+.+||+
T Consensus 149 ---~~-----~-----~~---~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~ 206 (446)
T PLN00414 149 ---AE-----L-----GF---PPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEG 206 (446)
T ss_pred ---hh-----c-----CC---CCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHH
Confidence 00 0 00 12444321 1111100 1110 0 0123333344567789999999999998
Q ss_pred cccccC-----CCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCC
Q 012594 228 PACDLI-----PNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQ 302 (460)
Q Consensus 228 ~~~~~~-----p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 302 (460)
...... +.++.|||+....... + + ...+.++.+|||.++++++|||||||......+++.+++.+|+..+.
T Consensus 207 ~~~~~~~~~~~~~v~~VGPl~~~~~~~-~-~--~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~ 282 (446)
T PLN00414 207 NLCDFIERQCQRKVLLTGPMLPEPQNK-S-G--KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGL 282 (446)
T ss_pred HHHHHHHHhcCCCeEEEcccCCCcccc-c-C--cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 866543 4689999997533211 0 0 11235689999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCc-cccCCCchhHHhhhCCCcEEe-eccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchh
Q 012594 303 PFLWVVRPDFMN-KSHAKLPDGFVERVSDRGKLV-EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQ 380 (460)
Q Consensus 303 ~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ 380 (460)
+|+|++...... .....+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||
T Consensus 283 ~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ 362 (446)
T PLN00414 283 PFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQ 362 (446)
T ss_pred CeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccch
Confidence 999999753111 122468999999888888776 999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012594 381 YQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG-----GIKANALKMKQMARKSLVEGGSSFRNFESFVSQL 455 (460)
Q Consensus 381 ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 455 (460)
+.||+++++.+|+|+.+..++.+.+++++|+++++++|.++ ++|++++++++.+.+ +||++ ..+++|++++
T Consensus 363 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~ 438 (446)
T PLN00414 363 VLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEAL 438 (446)
T ss_pred HHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHH
Confidence 99999997447999999642223589999999999999764 399999999999865 35634 4599999999
Q ss_pred Hhc
Q 012594 456 KAI 458 (460)
Q Consensus 456 ~~~ 458 (460)
+..
T Consensus 439 ~~~ 441 (446)
T PLN00414 439 ENE 441 (446)
T ss_pred HHh
Confidence 764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.1e-53 Score=412.07 Aligned_cols=420 Identities=15% Similarity=0.184 Sum_probs=283.4
Q ss_pred CCEEEEE-cCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCC--c-C---
Q 012594 4 EPHVLVI-PFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHE--A-D--- 76 (460)
Q Consensus 4 ~~~Il~~-~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~--- 76 (460)
..||+.+ |.++.||+.-+..|+++|++|||+||++++..... .... ...+++.+.++...+... . .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 3578855 77899999999999999999999999997753211 1000 112566665542111100 0 0
Q ss_pred --c-c---cH----HHHHHHHHhhchHHH--HHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHh-CCceEEEcccchH
Q 012594 77 --R-R---DL----HKVRQSMLTVMPGCL--RNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQM-GIARAAVIPYAPA 143 (460)
Q Consensus 77 --~-~---~~----~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~l-giP~v~~~~~~~~ 143 (460)
. . +. ......+...|...+ .++.+.++... .++|+||+|.+..|+..+|+.+ ++|.|.+++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 0 0 00 001111122222222 12233343111 7899999999888999999999 9999988876554
Q ss_pred HHHHHHhhhhHhhhcCCCCC--CCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHH----HHhhcccccEE
Q 012594 144 SLALVLHAPKLVEAGLLDSN--GNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSA----VAQNLKISNWI 217 (460)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 217 (460)
.......-..+....+.|.+ ++.+.++..+++.++-......+.+..+. ...++...+++.. ..+.....+++
T Consensus 171 ~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~l~~~~~l~ 249 (507)
T PHA03392 171 AENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLA-DEQNKLLKQQFGPDTPTIRELRNRVQLL 249 (507)
T ss_pred hhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHcCCCCCCHHHHHhCCcEE
Confidence 32211110011111222211 11222222222222110000000000000 1112222223211 12233567899
Q ss_pred EEccccccCccccccCCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcC---CCHHHHHHHH
Q 012594 218 LCNSFYELDPPACDLIPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAV---LSQEQLEELA 294 (460)
Q Consensus 218 l~~~~~~le~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~ 294 (460)
++|+++.++++ ++++|++++|||++.+.... .+.+.++.+|++.++ +++|||||||+.. .+.+.++.++
T Consensus 250 lvns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l 321 (507)
T PHA03392 250 FVNVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLL 321 (507)
T ss_pred EEecCccccCC-CCCCCCeeeecccccCCCCC------CCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHH
Confidence 99999999999 89999999999998754221 256788999999865 4699999999853 4778999999
Q ss_pred HHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeec
Q 012594 295 LGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCW 374 (460)
Q Consensus 295 ~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~ 374 (460)
+|+++++.++||+.++.. .+. ..++|+++.+|+||.+||+|+.+++||||||.||+.||+++|||||++
T Consensus 322 ~a~~~l~~~viw~~~~~~-------~~~----~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~i 390 (507)
T PHA03392 322 RTFKKLPYNVLWKYDGEV-------EAI----NLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGL 390 (507)
T ss_pred HHHHhCCCeEEEEECCCc-------Ccc----cCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEEC
Confidence 999999999999987541 111 137889999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012594 375 PYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQ 454 (460)
Q Consensus 375 P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 454 (460)
|+..||+.||+|+++ +|+|+.++. ..++.++|.++|+++++|++||+||+++++.+++. +-...+.+-..++.
T Consensus 391 P~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~ 463 (507)
T PHA03392 391 PMMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ---PMTPLHKAIWYTEH 463 (507)
T ss_pred CCCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 999999999999999 699999986 77899999999999999999999999999999973 43455666678887
Q ss_pred HHhcC
Q 012594 455 LKAIG 459 (460)
Q Consensus 455 l~~~~ 459 (460)
+..+|
T Consensus 464 v~r~~ 468 (507)
T PHA03392 464 VIRNK 468 (507)
T ss_pred HHhCC
Confidence 77664
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.7e-51 Score=407.96 Aligned_cols=397 Identities=25% Similarity=0.372 Sum_probs=229.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCc--Ccc-----
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEA--DRR----- 78 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~----- 78 (460)
||+++|. +.||+.++..|+++|++|||+||++++..... +... ....+++..++...+..+. ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7899985 78999999999999999999999998754322 2111 1125566666544433221 000
Q ss_pred ---------cHHHHHHHH---HhhchHHH------HHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEccc
Q 012594 79 ---------DLHKVRQSM---LTVMPGCL------RNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 79 ---------~~~~~~~~~---~~~~~~~~------~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (460)
.....+..+ .......+ .++++.++. .++|++|+|.+..|+..+|+.+++|.+.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~----~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS----EKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH----HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----hccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 011111111 11111111 123334444 78999999998889999999999999865443
Q ss_pred chHHHHHHHhhhhHhhhcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcc-hhHHHHHHHH-------------
Q 012594 141 APASLALVLHAPKLVEAGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHM-QKLFFGACSA------------- 206 (460)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------- 206 (460)
.+........ .+. ..+..++|....-....+. .+-+..+. ..........
T Consensus 150 ~~~~~~~~~~------------~g~---p~~psyvP~~~s~~~~~ms-f~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~ 213 (500)
T PF00201_consen 150 TPMYDLSSFS------------GGV---PSPPSYVPSMFSDFSDRMS-FWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKY 213 (500)
T ss_dssp CSCSCCTCCT------------SCC---CTSTTSTTCBCCCSGTTSS-SST--TTSHHHHHHHHHHHHGGGS-TTS-EEE
T ss_pred cccchhhhhc------------cCC---CCChHHhccccccCCCccc-hhhhhhhhhhhhhhccccccchhhHHHHHhhh
Confidence 3221000000 000 0111122221110000000 00000000 0000000000
Q ss_pred ------HHhhcccccEEEEccccccCccccccCCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcC
Q 012594 207 ------VAQNLKISNWILCNSFYELDPPACDLIPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFG 280 (460)
Q Consensus 207 ------~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~G 280 (460)
..+.+...+.+++|+.+.+++| +|..|++++||+++.++.. +.+.++..|++...++++||||||
T Consensus 214 ~~~~~~~~~~~~~~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~--------~l~~~~~~~~~~~~~~~vv~vsfG 284 (500)
T PF00201_consen 214 FGFPFSFRELLSNASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAK--------PLPEELWNFLDSSGKKGVVYVSFG 284 (500)
T ss_dssp SS-GGGCHHHHHHHHHCCSSTEEE-----HHHHCTSTTGCGC-S------------TCHHHHHHHTSTTTTTEEEEEE-T
T ss_pred cccccccHHHHHHHHHHhhhccccCcCC-cchhhcccccCcccccccc--------ccccccchhhhccCCCCEEEEecC
Confidence 0112345678999999999998 8999999999999887553 466788899998556779999999
Q ss_pred CCcCC-CHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChh
Q 012594 281 SVAVL-SQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWN 359 (460)
Q Consensus 281 s~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~ 359 (460)
|+... +.+..+.+++++++++++|||++.+. .+.. .++|+++.+|+||.+||+||++++||||||+|
T Consensus 285 s~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~--------~~~~----l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~ 352 (500)
T PF00201_consen 285 SIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE--------PPEN----LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLN 352 (500)
T ss_dssp SSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS--------HGCH----HHTTEEEESS--HHHHHTSTTEEEEEES--HH
T ss_pred cccchhHHHHHHHHHHHHhhCCCccccccccc--------cccc----ccceEEEeccccchhhhhcccceeeeeccccc
Confidence 99654 44558889999999999999999753 1122 35789999999999999999999999999999
Q ss_pred hhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhh
Q 012594 360 STLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLV 439 (460)
Q Consensus 360 sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~ 439 (460)
|++||+++|||||++|+++||+.||+++++ .|+|+.++. .++|.+.|.++|+++|+|++|++||+++++.+++.
T Consensus 353 s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~-- 426 (500)
T PF00201_consen 353 STQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLFRDR-- 426 (500)
T ss_dssp HHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT----
T ss_pred hhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--
Confidence 999999999999999999999999999999 699999987 78999999999999999999999999999999975
Q ss_pred cCCChHHHHHHHHHHHHhc
Q 012594 440 EGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 440 ~~g~~~~~~~~~~~~l~~~ 458 (460)
.-+..+.+-..+|.+.++
T Consensus 427 -p~~p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 427 -PISPLERAVWWIEYVARH 444 (500)
T ss_dssp -------------------
T ss_pred -CCCHHHHHHHHHHHHHhc
Confidence 344555666666665554
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.4e-44 Score=349.58 Aligned_cols=376 Identities=18% Similarity=0.250 Sum_probs=262.5
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcC----cccHHHHHH
Q 012594 10 IPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEAD----RRDLHKVRQ 85 (460)
Q Consensus 10 ~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~ 85 (460)
+.+|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++......... ..+....+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 35799999999999999999999999999999999999887 89998888654331101 023333444
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCCCC
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGN 165 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (460)
.+.......+..+.+.++. .+||+||+|.+++++..+|+.+|||+|.+++.+..... . +... ++
T Consensus 72 ~~~~~~~~~~~~l~~~~~~----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~---~-~~~~----~~---- 135 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKG----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE---F-EEMV----SP---- 135 (392)
T ss_pred HHHHHHHHHHHHHHHHhcC----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc---c-cccc----cc----
Confidence 4444444444555555555 89999999998889999999999999988654321100 0 0000 00
Q ss_pred CCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHH------Hhh--cccccEEEEccccccCccccccCCCee
Q 012594 166 AMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAV------AQN--LKISNWILCNSFYELDPPACDLIPNIL 237 (460)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~~~~~~le~~~~~~~p~~~ 237 (460)
..+.+. ........ . .....+.+.....+. ... ....+..+..+.+.|+++...++++++
T Consensus 136 --------~~~~~~--~~~~~~~~-~-~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 203 (392)
T TIGR01426 136 --------AGEGSA--EEGAIAER-G-LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFT 203 (392)
T ss_pred --------cchhhh--hhhccccc-h-hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeE
Confidence 000000 00000000 0 000000010110000 001 123345778888888877556788999
Q ss_pred eeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCcccc
Q 012594 238 TIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSH 317 (460)
Q Consensus 238 ~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 317 (460)
++||+....... ..|....+++++|||++||+.......++.+++++.+.+.++++..+.....
T Consensus 204 ~~Gp~~~~~~~~-------------~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~--- 267 (392)
T TIGR01426 204 FVGPCIGDRKED-------------GSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP--- 267 (392)
T ss_pred EECCCCCCcccc-------------CCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh---
Confidence 999987643211 1355555668899999999866666788899999999999998887644111
Q ss_pred CCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEe
Q 012594 318 AKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRF 397 (460)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~ 397 (460)
+.+ ...++|+.+.+|+|+.++|.++++ ||||||.||+.||+++|+|+|++|...||..||+++++ +|+|..+
T Consensus 268 ----~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l 339 (392)
T TIGR01426 268 ----ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHL 339 (392)
T ss_pred ----hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEe
Confidence 111 123678999999999999988665 99999999999999999999999999999999999999 6999998
Q ss_pred ecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012594 398 FPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVS 453 (460)
Q Consensus 398 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 453 (460)
.. ..++++.|.++|+++|+|++|+++++++++++++ .++..++++.+.+
T Consensus 340 ~~---~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~----~~~~~~aa~~i~~ 388 (392)
T TIGR01426 340 PP---EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIRE----AGGARRAADEIEG 388 (392)
T ss_pred cc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 75 6789999999999999999999999999999997 3444444444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=9.8e-44 Score=345.38 Aligned_cols=366 Identities=18% Similarity=0.159 Sum_probs=251.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCc---------
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEA--------- 75 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------- 75 (460)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...+++. |++|..++........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 5899999999999999999999999999999999999999988887 8999988754322110
Q ss_pred --CcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhh
Q 012594 76 --DRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPK 153 (460)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 153 (460)
...........+.......++++++.++. ++||+||+|.+.+++..+|+++|||++.+++.+.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~----- 142 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF----- 142 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-----
Confidence 01112223333444455556666666655 8999999999888999999999999999887664311000
Q ss_pred HhhhcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhc---------ccccEEEEccccc
Q 012594 154 LVEAGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNL---------KISNWILCNSFYE 224 (460)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~ 224 (460)
.|.+ .... ...+....................+.+ ...+..+....+.
T Consensus 143 ---------------------~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~ 199 (401)
T cd03784 143 ---------------------PPPL-GRAN-LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPA 199 (401)
T ss_pred ---------------------CCcc-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcc
Confidence 0000 0000 000000000000000000111111111 1123444445555
Q ss_pred cCccccccCCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCC-HHHHHHHHHHHHhCCCC
Q 012594 225 LDPPACDLIPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLS-QEQLEELALGLESLQQP 303 (460)
Q Consensus 225 le~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~ 303 (460)
+.++..+++++..++|......... ...+.++..|++. ++++|||++||..... .+.+..++++++..+.+
T Consensus 200 ~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~ 271 (401)
T cd03784 200 VLPPPPDWPRFDLVTGYGFRDVPYN------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQR 271 (401)
T ss_pred cCCCCCCccccCcEeCCCCCCCCCC------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCe
Confidence 5444355666777776333322211 1345566777765 3669999999986544 46678899999988999
Q ss_pred EEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhh
Q 012594 304 FLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQN 383 (460)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~ 383 (460)
+||.++.... .. ...++|+++.+|+||.++|.++++ ||||||+||+.||+++|||+|++|+..||+.|
T Consensus 272 ~i~~~g~~~~----~~------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~ 339 (401)
T cd03784 272 AILSLGWGGL----GA------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFW 339 (401)
T ss_pred EEEEccCccc----cc------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHH
Confidence 9998875411 10 123688999999999999987555 99999999999999999999999999999999
Q ss_pred HHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012594 384 RNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARK 436 (460)
Q Consensus 384 a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 436 (460)
|+++++ +|+|+.+.. ..++++.|.++|++++++ .++++++++++++++
T Consensus 340 a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~ 387 (401)
T cd03784 340 AARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHh
Confidence 999999 699999975 558999999999999974 567778888888865
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-42 Score=325.55 Aligned_cols=394 Identities=20% Similarity=0.204 Sum_probs=251.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH---
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL--- 80 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--- 80 (460)
++||+|+..|+.||++|+++|+++|.++||+|+|+|++.+.+.++++ |+.|..++....... ...+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~-~~~~~~~~ 70 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELA-TEDGKFAG 70 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhh-hhhhhhhc
Confidence 35999999999999999999999999999999999999999999999 777777775422111 11111
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHh-hhhHhhhcC
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLH-APKLVEAGL 159 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (460)
...+......+.....++++.+.+ ..+|+++.|...+.+ .+++..++|++............... .+.....+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (406)
T COG1819 71 VKSFRRLLQQFKKLIRELLELLRE----LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGK 145 (406)
T ss_pred cchhHHHhhhhhhhhHHHHHHHHh----cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccc
Confidence 111111222333445565566666 889999988755544 88999999999755443321111100 000000000
Q ss_pred CCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcc--hhHHHHHHH-HHHhhcccccEEEEccccccCccccccCCCe
Q 012594 160 LDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHM--QKLFFGACS-AVAQNLKISNWILCNSFYELDPPACDLIPNI 236 (460)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~ 236 (460)
......+-++....+............ ......... ...+.........+...+...++....+...
T Consensus 146 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 215 (406)
T COG1819 146 ----------LPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIG 215 (406)
T ss_pred ----------ccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCc
Confidence 000000000000000000000000000 000000000 0011111111111111111111102223345
Q ss_pred eeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccc
Q 012594 237 LTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKS 316 (460)
Q Consensus 237 ~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 316 (460)
.++||+....... ...| ...++++||+|+||.... .+.++.+++++..++.++|+.+... .. .
T Consensus 216 ~~~~~~~~~~~~~------------~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~-~ 278 (406)
T COG1819 216 PYIGPLLGEAANE------------LPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD-T 278 (406)
T ss_pred Ccccccccccccc------------Ccch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc-c
Confidence 6677777655432 1122 234577999999998765 8889999999999999999988652 10 1
Q ss_pred cCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeE
Q 012594 317 HAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLR 396 (460)
Q Consensus 317 ~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~ 396 (460)
.. ..++|+.+.+|+||.++++++++ ||||||+||++|||++|||+|++|...||+.||.|+++ +|+|..
T Consensus 279 ~~--------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~ 347 (406)
T COG1819 279 LV--------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIA 347 (406)
T ss_pred cc--------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCcee
Confidence 11 23678999999999999977666 99999999999999999999999999999999999999 799999
Q ss_pred eecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 397 FFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 397 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
+.. +.++.+.|+++|+++|+|+.|+++++++++.+++. +| .+.+.+.++++...
T Consensus 348 l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 348 LPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred cCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 986 67999999999999999999999999999999984 33 56677777775543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.3e-41 Score=339.55 Aligned_cols=407 Identities=29% Similarity=0.427 Sum_probs=261.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCcc--c--cCCCCeEEEEcCCCCCCCCcCcc-
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQK--A--EQSSLITMVSIPDGLESHEADRR- 78 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~~- 78 (460)
..+++++++|++||++|+..||+.|+++||+||++++.......... ... . .....+.+...+.+++... ...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGW-EDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccch-HHHH
Confidence 35788889999999999999999999999999999998765544321 100 0 0011122222222222221 111
Q ss_pred -cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhC-CceEEEcccchHHHHHHHhhhhHhh
Q 012594 79 -DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMG-IARAAVIPYAPASLALVLHAPKLVE 156 (460)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~ 156 (460)
........+...+...+++....+..... .++|++|+|.+..+...+|.... ||...+............+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~-- 159 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKS-EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS-- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhc-CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc--
Confidence 11111333444445555554433332221 44999999997667777776664 88888877777654443322211
Q ss_pred hcCCCCCCCC---CCCCcccccCCCCCCccccCCC---CCCCCCcchhHHHHHHH-------HHHhhcccccEEEEcccc
Q 012594 157 AGLLDSNGNA---MTDEPILLSEGTLPWKKKEYGW---CFPSQPHMQKLFFGACS-------AVAQNLKISNWILCNSFY 223 (460)
Q Consensus 157 ~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 223 (460)
+.+..... ..+......+++. ...+.. ................. ...+...+.+..++|+.+
T Consensus 160 --~~p~~~~~~~~~~~~~~~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~ 234 (496)
T KOG1192|consen 160 --YVPSPFSLSSGDDMSFPERVPNLI---KKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNP 234 (496)
T ss_pred --ccCcccCccccccCcHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCc
Confidence 11100000 0001111111000 000000 00000000000000000 011234566789999999
Q ss_pred ccCccccccCCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCC--cEEEEEcCCCc---CCCHHHHHHHHHHHH
Q 012594 224 ELDPPACDLIPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVG--SVIYVAFGSVA---VLSQEQLEELALGLE 298 (460)
Q Consensus 224 ~le~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~a~~ 298 (460)
.++++..+..++++.|||+....... ......+|++..+.+ ++|||||||+. .++.+...+++.+++
T Consensus 235 ~~~~~~~~~~~~v~~IG~l~~~~~~~--------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~ 306 (496)
T KOG1192|consen 235 LLDFEPRPLLPKVIPIGPLHVKDSKQ--------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALE 306 (496)
T ss_pred ccCCCCCCCCCCceEECcEEecCccc--------cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHH
Confidence 98885477789999999999884321 111345677665554 79999999997 789999999999999
Q ss_pred hC-CCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchhh-cCCCcccceeeccChhhhhHhhhcCCceeeccc
Q 012594 299 SL-QQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKV-LGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPY 376 (460)
Q Consensus 299 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~l-l~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~ 376 (460)
.+ ++.|+|++..... ..+++++.++.++||...+|+||.++ |.|+++++||||||+||++|++++|||||++|+
T Consensus 307 ~~~~~~FiW~~~~~~~----~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Pl 382 (496)
T KOG1192|consen 307 SLQGVTFLWKYRPDDS----IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPL 382 (496)
T ss_pred hCCCceEEEEecCCcc----hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCc
Confidence 99 7788999986511 11233332112467888999999998 699999999999999999999999999999999
Q ss_pred cchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012594 377 FADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARK 436 (460)
Q Consensus 377 ~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 436 (460)
++||+.||+++++. |.|..+.+ .+.+.+.+.+++.+++++++|+++++++++.+++
T Consensus 383 f~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 383 FGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKEAAKRLSEILRD 438 (496)
T ss_pred cccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHc
Confidence 99999999999995 77777766 5566655999999999999999999999999885
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=8.6e-26 Score=212.95 Aligned_cols=318 Identities=18% Similarity=0.182 Sum_probs=199.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh--HHhhccCccccCCCCeEEEEcCCC-CCCCCcCcccHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA--KITASMPQKAEQSSLITMVSIPDG-LESHEADRRDLHK 82 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~ 82 (460)
||+|...|+.||+.|.++||++|.++||+|+++++..-.+ .+.+. +++++.++.. +. ....+.
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~---------g~~~~~~~~~~l~-----~~~~~~ 68 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKE---------NIPYYSISSGKLR-----RYFDLK 68 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCccc---------CCcEEEEeccCcC-----CCchHH
Confidence 8999999999999999999999999999999999765432 22232 6777777631 21 111122
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCC
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLL 160 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.+......... +...+..++. .+||+|++...+. .+..+|..+++|++........
T Consensus 69 ~~~~~~~~~~~-~~~~~~i~~~----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~----------------- 126 (352)
T PRK12446 69 NIKDPFLVMKG-VMDAYVRIRK----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP----------------- 126 (352)
T ss_pred HHHHHHHHHHH-HHHHHHHHHh----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc-----------------
Confidence 22222222222 2233334444 9999999987555 3578899999999964433211
Q ss_pred CCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccC-CCeeee
Q 012594 161 DSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLI-PNILTI 239 (460)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~-p~~~~v 239 (460)
++. + +.+ .+.++.++.. +++ ....+. .+++++
T Consensus 127 ----------------g~~-----------------n----r~~------~~~a~~v~~~-f~~---~~~~~~~~k~~~t 159 (352)
T PRK12446 127 ----------------GLA-----------------N----KIA------LRFASKIFVT-FEE---AAKHLPKEKVIYT 159 (352)
T ss_pred ----------------cHH-----------------H----HHH------HHhhCEEEEE-ccc---hhhhCCCCCeEEE
Confidence 000 0 000 1223333322 121 101112 367888
Q ss_pred CccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCccccC
Q 012594 240 GPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQ-EQLEELALGLESLQQPFLWVVRPDFMNKSHA 318 (460)
Q Consensus 240 Gp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 318 (460)
|+-..+.... ....+..+.+...+++++|+|..||...... +.+..++..+. .+.+++|.++.+.
T Consensus 160 G~Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~------ 225 (352)
T PRK12446 160 GSPVREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN------ 225 (352)
T ss_pred CCcCCccccc-------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch------
Confidence 8766554321 1111212223334557799999999865333 33344444442 2477888887541
Q ss_pred CCchhHHhhhCCCcEEeecc-Cc-hhhcCCCcccceeeccChhhhhHhhhcCCceeecccc-----chhhhhHHHHHhhh
Q 012594 319 KLPDGFVERVSDRGKLVEWA-PQ-EKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYF-----ADQYQNRNYIFDAW 391 (460)
Q Consensus 319 ~~~~~~~~~~~~~v~~~~~~-p~-~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~-----~dQ~~~a~~v~~~l 391 (460)
+..... . ..++.+.+|+ +. .++|.++++ +|||||.+|+.|++++|+|+|++|+. .||..||+++++ .
T Consensus 226 -~~~~~~-~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~ 299 (352)
T PRK12446 226 -LDDSLQ-N-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-Q 299 (352)
T ss_pred -HHHHHh-h-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-C
Confidence 111110 0 1244566777 43 468977776 99999999999999999999999985 489999999999 6
Q ss_pred cceeEeecCCCCccCHHHHHHHHHHHhcCh-HHHHHHHH
Q 012594 392 KIGLRFFPDENGIITRQEIQRQVKALLNDG-GIKANALK 429 (460)
Q Consensus 392 g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~a~~ 429 (460)
|+|..+.. .+++++.|.+++.++++|+ .|++++++
T Consensus 300 g~~~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 335 (352)
T PRK12446 300 GYASVLYE---EDVTVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred CCEEEcch---hcCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999964 7789999999999999886 45544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=2.2e-25 Score=209.73 Aligned_cols=308 Identities=19% Similarity=0.218 Sum_probs=195.3
Q ss_pred CEEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHH
Q 012594 5 PHVLVIPFP-AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKV 83 (460)
Q Consensus 5 ~~Il~~~~~-~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (460)
|||+|...+ +.||+.++++||++| |||+|++++.....+.+.+. +....+++-........-+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccCceEeccCCccchHHH
Confidence 589888776 999999999999999 69999999998776666432 34444432111111011122222
Q ss_pred HHHH---HhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCC
Q 012594 84 RQSM---LTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLL 160 (460)
Q Consensus 84 ~~~~---~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.... .......++++.+.++. .+||+||+|. .+.+..+|+..|||++.+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~----~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~--------------- 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE----FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH--------------- 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh----cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc---------------
Confidence 2221 12234455666666666 9999999995 55577889999999998876654310
Q ss_pred CCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeeeeC
Q 012594 161 DSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILTIG 240 (460)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vG 240 (460)
+.. ...........+..+.... ....++..+.-+++ . + .....++.++|
T Consensus 129 ---------------~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~--~-~~~~~~~~~~~ 177 (318)
T PF13528_consen 129 ---------------PNF----------WLPWDQDFGRLIERYIDRY--HFPPADRRLALSFY-P--P-LPPFFRVPFVG 177 (318)
T ss_pred ---------------ccC----------CcchhhhHHHHHHHhhhhc--cCCcccceecCCcc-c--c-ccccccccccC
Confidence 000 0000000011111111110 12344444444433 1 1 22233566788
Q ss_pred ccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCccccCC
Q 012594 241 PLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQ-QPFLWVVRPDFMNKSHAK 319 (460)
Q Consensus 241 p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~ 319 (460)
|...+.... . . ..+++.|+|++|..... .++++++..+ .++++. +.. ..
T Consensus 178 p~~~~~~~~--------~--------~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~------~~ 227 (318)
T PF13528_consen 178 PIIRPEIRE--------L--------P-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN------AA 227 (318)
T ss_pred chhcccccc--------c--------C-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC------cc
Confidence 887654322 0 0 12345899999985432 5667776666 566555 433 00
Q ss_pred CchhHHhhhCCCcEEeecc--CchhhcCCCcccceeeccChhhhhHhhhcCCceeeccc--cchhhhhHHHHHhhhccee
Q 012594 320 LPDGFVERVSDRGKLVEWA--PQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPY--FADQYQNRNYIFDAWKIGL 395 (460)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~--p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~--~~dQ~~~a~~v~~~lg~g~ 395 (460)
. ..++|+.+.+|. ...++|..+++ +|+|||+||+.|++++|+|+|++|. ..||..||+++++ +|+|.
T Consensus 228 ~------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~ 298 (318)
T PF13528_consen 228 D------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGI 298 (318)
T ss_pred c------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeE
Confidence 0 126788888876 44578966555 9999999999999999999999999 7899999999999 69999
Q ss_pred EeecCCCCccCHHHHHHHHHHH
Q 012594 396 RFFPDENGIITRQEIQRQVKAL 417 (460)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~i~~~ 417 (460)
.+.. .+++++.|++.|+++
T Consensus 299 ~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 299 VLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred Eccc---ccCCHHHHHHHHhcC
Confidence 9975 789999999999764
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=2.6e-23 Score=195.04 Aligned_cols=310 Identities=13% Similarity=0.101 Sum_probs=174.9
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeE-EEEcCCCCCCCCcCcccHHHH
Q 012594 6 HVLVIPFP-AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLIT-MVSIPDGLESHEADRRDLHKV 83 (460)
Q Consensus 6 ~Il~~~~~-~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 83 (460)
||++...+ +.||+.|.++|+++|.+ ||+|+++++......+... ++. +..+|..........-+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHH
Confidence 57887766 45999999999999999 9999999988866655554 333 222221100000000112222
Q ss_pred HHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCC
Q 012594 84 RQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSN 163 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
+..........+.+..+.++. .+||+||+| +.+.+..+|+.+|||++.+......
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~----~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~-------------------- 125 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE----YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT-------------------- 125 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh----cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh--------------------
Confidence 211101112334455555666 999999999 5666788999999999987652211
Q ss_pred CCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCee--eeCc
Q 012594 164 GNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNIL--TIGP 241 (460)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~--~vGp 241 (460)
..|... + ............ -...++.++...++... +..|.+. .-+|
T Consensus 126 ----------~~~~~~----~-----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~ 174 (321)
T TIGR00661 126 ----------RYPLKT----D-----------LIVYPTMAALRI--FNERCERFIVPDYPFPY----TICPKIIKNMEGP 174 (321)
T ss_pred ----------cCCccc----c-----------hhHHHHHHHHHH--hccccceEeeecCCCCC----CCCccccccCCCc
Confidence 001000 0 000000000000 11122333333222111 1111110 0011
Q ss_pred cCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCc
Q 012594 242 LLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLP 321 (460)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 321 (460)
... .+..++... +++.|++.+|+... ..+++++++.+. +.+++... ....
T Consensus 175 ~~~---------------~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~------~~~~ 224 (321)
T TIGR00661 175 LIR---------------YDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSY------EVAK 224 (321)
T ss_pred ccc---------------hhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCC------CCCc
Confidence 110 111122222 24478888887432 345666766553 22333222 0111
Q ss_pred hhHHhhhCCCcEEeeccC--chhhcCCCcccceeeccChhhhhHhhhcCCceeeccccc--hhhhhHHHHHhhhcceeEe
Q 012594 322 DGFVERVSDRGKLVEWAP--QEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFA--DQYQNRNYIFDAWKIGLRF 397 (460)
Q Consensus 322 ~~~~~~~~~~v~~~~~~p--~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~--dQ~~~a~~v~~~lg~g~~~ 397 (460)
+. .++|+.+.+|.| ..++|.. ++++|||||.+|+.|++++|+|++++|... ||..||+.+++ +|+|+.+
T Consensus 225 ~~----~~~~v~~~~~~~~~~~~~l~~--ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l 297 (321)
T TIGR00661 225 NS----YNENVEIRRITTDNFKELIKN--AELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIAL 297 (321)
T ss_pred cc----cCCCEEEEECChHHHHHHHHh--CCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEc
Confidence 11 257888889997 3457755 555999999999999999999999999854 89999999999 6999998
Q ss_pred ecCCCCccCHHHHHHHHHHHhcChHHH
Q 012594 398 FPDENGIITRQEIQRQVKALLNDGGIK 424 (460)
Q Consensus 398 ~~~~~~~~~~~~l~~~i~~~l~~~~~~ 424 (460)
.. .++ ++.+++.++++|+.|+
T Consensus 298 ~~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 298 EY---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred Ch---hhH---HHHHHHHhcccccccc
Confidence 64 333 6677777888887764
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.9e-21 Score=179.68 Aligned_cols=324 Identities=17% Similarity=0.146 Sum_probs=195.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCC-EEEEEeCccchhH-HhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGI-KVTFVSTEHMHAK-ITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKV 83 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh-~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (460)
+|++...++.||+.|.++|+++|.++|+ +|.++.+....+. +.+. .++.++.|+.+..........+...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~--------~~~~~~~I~~~~~~~~~~~~~~~~~ 73 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ--------YGIEFELIPSGGLRRKGSLKLLKAP 73 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc--------cCceEEEEecccccccCcHHHHHHH
Confidence 6899999999999999999999999999 5777766543332 2222 2778888775443332111112221
Q ss_pred HHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCC
Q 012594 84 RQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLD 161 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
+..+. .....+.+++. .+||+|+.-..+. .+..+|..+|||.+.......
T Consensus 74 ~~~~~--~~~~a~~il~~-------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~------------------- 125 (357)
T COG0707 74 FKLLK--GVLQARKILKK-------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV------------------- 125 (357)
T ss_pred HHHHH--HHHHHHHHHHH-------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC-------------------
Confidence 22211 11224455555 9999999976666 556678888999996332211
Q ss_pred CCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeeeeCc
Q 012594 162 SNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILTIGP 241 (460)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vGp 241 (460)
+++. ++... ..++.+... ++..+- .....+++.+|-
T Consensus 126 --------------~G~a-----------------nk~~~----------~~a~~V~~~-f~~~~~--~~~~~~~~~tG~ 161 (357)
T COG0707 126 --------------PGLA-----------------NKILS----------KFAKKVASA-FPKLEA--GVKPENVVVTGI 161 (357)
T ss_pred --------------cchh-----------------HHHhH----------Hhhceeeec-cccccc--cCCCCceEEecC
Confidence 1111 00000 111222221 111100 111125677774
Q ss_pred cCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCC
Q 012594 242 LLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLS-QEQLEELALGLESLQQPFLWVVRPDFMNKSHAKL 320 (460)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~ 320 (460)
-..++-. ..+..... .+...++++|+|.-||+.... .+.+..+...+.. +.++++.++.+.
T Consensus 162 Pvr~~~~--------~~~~~~~~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-------- 223 (357)
T COG0707 162 PVRPEFE--------ELPAAEVR-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-------- 223 (357)
T ss_pred cccHHhh--------ccchhhhh-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch--------
Confidence 3332211 00000001 122225779999999975422 2223333333333 456677766541
Q ss_pred chhHHhhh-CCC-cEEeeccCch-hhcCCCcccceeeccChhhhhHhhhcCCceeecccc----chhhhhHHHHHhhhcc
Q 012594 321 PDGFVERV-SDR-GKLVEWAPQE-KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYF----ADQYQNRNYIFDAWKI 393 (460)
Q Consensus 321 ~~~~~~~~-~~~-v~~~~~~p~~-~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~----~dQ~~~a~~v~~~lg~ 393 (460)
.+...... ..+ +.+.+|.+.. .+|+.+++ +||++|.+|+.|++++|+|+|.+|+. .||..||..+++ .|.
T Consensus 224 ~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~-~ga 300 (357)
T COG0707 224 LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK-AGA 300 (357)
T ss_pred HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHh-CCC
Confidence 11221111 233 6777998876 58877666 99999999999999999999999974 489999999999 599
Q ss_pred eeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012594 394 GLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARK 436 (460)
Q Consensus 394 g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 436 (460)
|..+.- .++|.+.+.+.|.++++++ ++.++|++..++
T Consensus 301 a~~i~~---~~lt~~~l~~~i~~l~~~~---~~l~~m~~~a~~ 337 (357)
T COG0707 301 ALVIRQ---SELTPEKLAELILRLLSNP---EKLKAMAENAKK 337 (357)
T ss_pred EEEecc---ccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHh
Confidence 999974 6789999999999999874 455556555554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.89 E-value=9.7e-21 Score=181.19 Aligned_cols=343 Identities=14% Similarity=0.099 Sum_probs=201.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch--hHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH--AKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (460)
|||+|...+..||....+.|+++|.++||+|++++.+... ...++ .+++++.++..-.... ....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~----~~~~ 68 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSGGLRRK----GSLA 68 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEeccCcCCC----ChHH
Confidence 4899999999999999999999999999999999986532 11111 2667766653211111 1111
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCc--chHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCC
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTV--GWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLL 160 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.+...... ...+..+.+.+++ .+||+|++.... ..+..+++..++|+|......
T Consensus 69 ~l~~~~~~-~~~~~~~~~~ik~----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------- 124 (357)
T PRK00726 69 NLKAPFKL-LKGVLQARKILKR----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------- 124 (357)
T ss_pred HHHHHHHH-HHHHHHHHHHHHh----cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------------
Confidence 11111111 1223334444444 899999999633 244566777899998532110
Q ss_pred CCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeeeeC
Q 012594 161 DSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILTIG 240 (460)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vG 240 (460)
.++ ...... ...+|.++..+...+. .....++.++|
T Consensus 125 --------------~~~---------------------~~~r~~------~~~~d~ii~~~~~~~~---~~~~~~i~vi~ 160 (357)
T PRK00726 125 --------------VPG---------------------LANKLL------ARFAKKVATAFPGAFP---EFFKPKAVVTG 160 (357)
T ss_pred --------------Ccc---------------------HHHHHH------HHHhchheECchhhhh---ccCCCCEEEEC
Confidence 000 000000 1123444433322211 11224677777
Q ss_pred ccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHH-HHHHHHHHhCCC--CEEEEEcCCCCcccc
Q 012594 241 PLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQL-EELALGLESLQQ--PFLWVVRPDFMNKSH 317 (460)
Q Consensus 241 p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~-~~~~~a~~~~~~--~~i~~~~~~~~~~~~ 317 (460)
+........ .+.. ..-+...++.++|++..|+. ..+.+ ..+.+++.++.. .+++.++.+. .
T Consensus 161 n~v~~~~~~--------~~~~-~~~~~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~----~ 224 (357)
T PRK00726 161 NPVREEILA--------LAAP-PARLAGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGD----L 224 (357)
T ss_pred CCCChHhhc--------ccch-hhhccCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCc----H
Confidence 554432211 0000 00112223344666655552 22223 333366655443 3445555441 1
Q ss_pred CCCchhHHhhhCCCcEEeeccC-chhhcCCCcccceeeccChhhhhHhhhcCCceeeccc----cchhhhhHHHHHhhhc
Q 012594 318 AKLPDGFVERVSDRGKLVEWAP-QEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPY----FADQYQNRNYIFDAWK 392 (460)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~~~p-~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~----~~dQ~~~a~~v~~~lg 392 (460)
..+.+.. + ..-++.+.+|+. ..++|..+++ +|+|+|.++++||+++|+|+|++|. ..||..++..+.+ .|
T Consensus 225 ~~~~~~~-~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~ 299 (357)
T PRK00726 225 EEVRAAY-A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AG 299 (357)
T ss_pred HHHHHHh-h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CC
Confidence 1111111 1 122377889984 4579966666 9999999999999999999999997 4689999999999 59
Q ss_pred ceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 393 IGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 393 ~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
.|..+.. ++++++.|+++|.++++|++++++..+-+.+..+ .++..+.++.+++.++
T Consensus 300 ~g~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 300 AALLIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARALGK----PDAAERLADLIEELAR 356 (357)
T ss_pred CEEEEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC----cCHHHHHHHHHHHHhh
Confidence 9999975 5678999999999999998887776666655543 5666666666655543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=7e-19 Score=168.05 Aligned_cols=325 Identities=14% Similarity=0.098 Sum_probs=188.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
||+|...++.||......|++.|.++||+|++++....... ... ...+++++.++..-... ......+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV------PKAGIPLHTIPVGGLRR----KGSLKKLK 69 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc------cccCCceEEEEecCcCC----CChHHHHH
Confidence 58999999999999999999999999999999987543211 100 01256666665321111 11111111
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCc--chHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCC
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTV--GWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSN 163 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
.+... ...+..+.+.+++ .+||+|++.... ..+..+|...++|++......
T Consensus 70 ~~~~~-~~~~~~~~~~i~~----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~---------------------- 122 (350)
T cd03785 70 APFKL-LKGVLQARKILKK----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA---------------------- 122 (350)
T ss_pred HHHHH-HHHHHHHHHHHHh----cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC----------------------
Confidence 11111 1112233333444 899999987533 245677888899998522110
Q ss_pred CCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeeeeCccC
Q 012594 164 GNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILTIGPLL 243 (460)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vGp~~ 243 (460)
.++ ..... ....++.++..+....+. -...++..+|...
T Consensus 123 -----------~~~---------------------~~~~~------~~~~~~~vi~~s~~~~~~---~~~~~~~~i~n~v 161 (350)
T cd03785 123 -----------VPG---------------------LANRL------LARFADRVALSFPETAKY---FPKDKAVVTGNPV 161 (350)
T ss_pred -----------Ccc---------------------HHHHH------HHHhhCEEEEcchhhhhc---CCCCcEEEECCCC
Confidence 000 00000 112356666665444332 1123567777544
Q ss_pred CCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCccccCCC
Q 012594 244 GRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL---QQPFLWVVRPDFMNKSHAKL 320 (460)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~ 320 (460)
...... +.+. ...+...+++++|++..|+... .+....+.+++..+ +..+++.++.. ....+
T Consensus 162 ~~~~~~-------~~~~--~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g----~~~~l 226 (350)
T cd03785 162 REEILA-------LDRE--RARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTGKG----DLEEV 226 (350)
T ss_pred chHHhh-------hhhh--HHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCc----cHHHH
Confidence 322111 0000 1222333344466666665432 12222233444333 33445555533 11111
Q ss_pred chhHHhhhCCCcEEeecc-CchhhcCCCcccceeeccChhhhhHhhhcCCceeeccc----cchhhhhHHHHHhhhccee
Q 012594 321 PDGFVERVSDRGKLVEWA-PQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPY----FADQYQNRNYIFDAWKIGL 395 (460)
Q Consensus 321 ~~~~~~~~~~~v~~~~~~-p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~----~~dQ~~~a~~v~~~lg~g~ 395 (460)
.+... ...+|+.+.+|+ +...+|..+++ +|+++|.+|+.||+++|+|+|++|. ..+|..++..+.+ .|.|.
T Consensus 227 ~~~~~-~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~ 302 (350)
T cd03785 227 KKAYE-ELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAV 302 (350)
T ss_pred HHHHh-ccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEE
Confidence 11111 114689999998 44568976666 9999999999999999999999986 4679999999998 59999
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012594 396 RFFPDENGIITRQEIQRQVKALLNDGGIKANALKMK 431 (460)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~ 431 (460)
.+.. ...+.+.+.++|+++++|++.+++..+-+
T Consensus 303 ~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 303 LIPQ---EELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred EEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9964 44689999999999998876655444433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.79 E-value=3.6e-17 Score=156.16 Aligned_cols=317 Identities=16% Similarity=0.120 Sum_probs=175.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh--HHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA--KITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKV 83 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (460)
||+|++.+..||+.....|+++|.++||+|++++.+.... .... .+++++.++...... ......
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~---------~g~~~~~i~~~~~~~----~~~~~~ 68 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK---------AGIEFYFIPVGGLRR----KGSFRL 68 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc---------CCCceEEEeccCcCC----CChHHH
Confidence 7999999999999988899999999999999998744211 1111 267776665322111 112122
Q ss_pred HHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCC
Q 012594 84 RQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLD 161 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
+...... ...+..+.+.++. .+||+|++..... .+..+++.+++|.+......
T Consensus 69 l~~~~~~-~~~~~~l~~~i~~----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~-------------------- 123 (348)
T TIGR01133 69 IKTPLKL-LKAVFQARRILKK----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA-------------------- 123 (348)
T ss_pred HHHHHHH-HHHHHHHHHHHHh----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC--------------------
Confidence 2111111 1223333344444 8999999975433 34556788899997421100
Q ss_pred CCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeeeeCc
Q 012594 162 SNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILTIGP 241 (460)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vGp 241 (460)
.++ ..... ..+.+|.+++.+...-+.. ....+|.
T Consensus 124 -------------~~~---------------------~~~~~------~~~~~d~ii~~~~~~~~~~------~~~~i~n 157 (348)
T TIGR01133 124 -------------VPG---------------------LTNKL------LSRFAKKVLISFPGAKDHF------EAVLVGN 157 (348)
T ss_pred -------------Ccc---------------------HHHHH------HHHHhCeeEECchhHhhcC------CceEEcC
Confidence 000 00000 1124566655544322211 1244543
Q ss_pred cCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHh---CCCCEEEEEcCCCCccccC
Q 012594 242 LLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLES---LQQPFLWVVRPDFMNKSHA 318 (460)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~ 318 (460)
-....... .+.. ...+...+++++|.+..|+.. .......+.++++. .+.++++..++. .
T Consensus 158 ~v~~~~~~--------~~~~-~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~l~~~~~~~~~~~g~~----~-- 220 (348)
T TIGR01133 158 PVRQEIRS--------LPVP-RERFGLREGKPTILVLGGSQG--AKILNELVPKALAKLAEKGIQIVHQTGKN----D-- 220 (348)
T ss_pred CcCHHHhc--------ccch-hhhcCCCCCCeEEEEECCchh--HHHHHHHHHHHHHHHhhcCcEEEEECCcc----h--
Confidence 22211100 0000 012222233435544444433 12222223344433 344555444432 1
Q ss_pred CCchhHHhhhCC-Cc-EEeecc--CchhhcCCCcccceeeccChhhhhHhhhcCCceeecccc---chhhhhHHHHHhhh
Q 012594 319 KLPDGFVERVSD-RG-KLVEWA--PQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYF---ADQYQNRNYIFDAW 391 (460)
Q Consensus 319 ~~~~~~~~~~~~-~v-~~~~~~--p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~---~dQ~~~a~~v~~~l 391 (460)
. +.+.+...+ ++ ..+.|. +...+|..+++ +|+++|.+++.||+++|+|+|++|.. .+|..++..+.+ .
T Consensus 221 -~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~ 295 (348)
T TIGR01133 221 -L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-L 295 (348)
T ss_pred -H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-C
Confidence 1 122211111 11 233344 34568877666 99999988999999999999999863 468889999988 5
Q ss_pred cceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012594 392 KIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMK 431 (460)
Q Consensus 392 g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~ 431 (460)
|.|..+.. ++.+.+.|.++|+++++|++++++..+-+
T Consensus 296 ~~G~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 296 GAGLVIRQ---KELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred CCEEEEec---ccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99998864 55689999999999999887665444333
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.79 E-value=1.5e-17 Score=159.40 Aligned_cols=352 Identities=13% Similarity=0.048 Sum_probs=199.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
+||+|...++.||+.|. +|+++|+++|++|.+++.... .+++.+.+ .++++..++. ..+...+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~v---------~G~~~~l 68 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELSV---------MGLREVL 68 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhhh---------ccHHHHH
Confidence 48999999999999999 999999999999999986532 34444211 1233333321 1111111
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-h--HHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCC
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-W--ALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLD 161 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
..+.. +...+.+..+.+++ .+||+||.-.+.. . ....|+.+|||++... ++-.+
T Consensus 69 ~~~~~-~~~~~~~~~~~l~~----~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~w----------------- 125 (385)
T TIGR00215 69 GRLGR-LLKIRKEVVQLAKQ----AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQVW----------------- 125 (385)
T ss_pred HHHHH-HHHHHHHHHHHHHh----cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcHh-----------------
Confidence 21111 11223344444444 9999999754322 2 2337889999999643 11100
Q ss_pred CCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeeeeCc
Q 012594 162 SNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILTIGP 241 (460)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vGp 241 (460)
.|. ....+.+. +.+|.++..+..+-+.- ....-+..++|.
T Consensus 126 ---------------------------aw~--~~~~r~l~----------~~~d~v~~~~~~e~~~~-~~~g~~~~~vGn 165 (385)
T TIGR00215 126 ---------------------------AWR--KWRAKKIE----------KATDFLLAILPFEKAFY-QKKNVPCRFVGH 165 (385)
T ss_pred ---------------------------hcC--cchHHHHH----------HHHhHhhccCCCcHHHH-HhcCCCEEEECC
Confidence 000 00011111 22344444433322211 111124567874
Q ss_pred cCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCccc
Q 012594 242 LLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRPDFMNKS 316 (460)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~ 316 (460)
-..+.... ..+...+..+-+.-.+++++|.+..||....-.+....+++++..+ +.++++.......
T Consensus 166 Pv~~~~~~-----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~--- 237 (385)
T TIGR00215 166 PLLDAIPL-----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR--- 237 (385)
T ss_pred chhhhccc-----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh---
Confidence 43322110 0011111122233334566888888886432133455566555433 2345444432210
Q ss_pred cCCCchhHHhhh--CCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeec----cccc---------hhh
Q 012594 317 HAKLPDGFVERV--SDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCW----PYFA---------DQY 381 (460)
Q Consensus 317 ~~~~~~~~~~~~--~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~----P~~~---------dQ~ 381 (460)
...-+.+.+.. ...+.+..+ ....+|+.+++ +|+-+|..|+ |++++|+|+|++ |+.. .|.
T Consensus 238 -~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~ 312 (385)
T TIGR00215 238 -RLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYI 312 (385)
T ss_pred -HHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCee
Confidence 00001111111 123333322 23458866666 9999999988 999999999999 8752 388
Q ss_pred hhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012594 382 QNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG----GIKANALKMKQMARKSLVEGGSSFRNFESFVS 453 (460)
Q Consensus 382 ~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 453 (460)
.|++.+..+ ++...+.- .++|++.|.+.+.++|+|+ +++++.++--.++++.+.++|.+.++.+.+++
T Consensus 313 ~~~nil~~~-~~~pel~q---~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 313 SLPNILANR-LLVPELLQ---EECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred eccHHhcCC-ccchhhcC---CCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 899999984 99988863 7789999999999999999 77777777666777666667788777776654
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.76 E-value=1.2e-16 Score=154.12 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=99.8
Q ss_pred CCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCccccCCCchhHH---hhhCCCcEEeeccCch-hhc
Q 012594 270 AVGSVIYVAFGSVAVLSQEQLEELALGLESL-QQPFLWVVRPDFMNKSHAKLPDGFV---ERVSDRGKLVEWAPQE-KVL 344 (460)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~-~ll 344 (460)
++++++++..|+... .+.+..+++++... +.+++++.+.+. ...+.+. +..++|+++.+|+++. +++
T Consensus 200 ~~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~ 271 (380)
T PRK13609 200 PNKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE------ALKQSLEDLQETNPDALKVFGYVENIDELF 271 (380)
T ss_pred CCCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH------HHHHHHHHHHhcCCCcEEEEechhhHHHHH
Confidence 345578887787643 23355677777543 456666655331 1111121 1123589999999874 689
Q ss_pred CCCcccceeeccChhhhhHhhhcCCceeec-cccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHH
Q 012594 345 GHPSVACFLSHCGWNSTLEGLSMGVPFLCW-PYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGI 423 (460)
Q Consensus 345 ~~~~~~~~I~hgG~~sv~eal~~GvP~i~~-P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 423 (460)
..+++ +|+.+|..|+.||+++|+|+|+. |....|..|+..+.+ .|.|+... +.+.+.++|.++++|++.
T Consensus 272 ~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~-------~~~~l~~~i~~ll~~~~~ 341 (380)
T PRK13609 272 RVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR-------DDEEVFAKTEALLQDDMK 341 (380)
T ss_pred HhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC-------CHHHHHHHHHHHHCCHHH
Confidence 88776 99999988999999999999985 666777889988887 49887652 578999999999998876
Q ss_pred HHHHHH
Q 012594 424 KANALK 429 (460)
Q Consensus 424 ~~~a~~ 429 (460)
+++..+
T Consensus 342 ~~~m~~ 347 (380)
T PRK13609 342 LLQMKE 347 (380)
T ss_pred HHHHHH
Confidence 554443
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.73 E-value=6.6e-16 Score=141.13 Aligned_cols=258 Identities=16% Similarity=0.130 Sum_probs=152.9
Q ss_pred EEEEEcCC----CccChHHHHHHHHHHHhCCCEEEEEeCccch---hHHhhccCccccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 6 HVLVIPFP----AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH---AKITASMPQKAEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 6 ~Il~~~~~----~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
||+|-.=+ +.||+.+++.||++|.++||+|+|++..... +.+++. +++++.+++...
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~---------g~~v~~~~~~~~------- 64 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSA---------GFPVYELPDESS------- 64 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHc---------CCeEEEecCCCc-------
Confidence 35555432 8899999999999999999999999987533 455555 788888774321
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHH--HHHHHhCCceEEEcccchHHHHHHHhhhhHhh
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWAL--EVAEQMGIARAAVIPYAPASLALVLHAPKLVE 156 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 156 (460)
...-..++++.++. .+||+||+|.+..... ...+..+.+++++--.....
T Consensus 65 ------------~~~d~~~~~~~l~~----~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~------------ 116 (279)
T TIGR03590 65 ------------RYDDALELINLLEE----EKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRP------------ 116 (279)
T ss_pred ------------hhhhHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCC------------
Confidence 01123334455554 8899999998655222 22334466666433221100
Q ss_pred hcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCc-cccc-cCC
Q 012594 157 AGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDP-PACD-LIP 234 (460)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~~~-~~p 234 (460)
..+|.++..+.. -+. .+.. .++
T Consensus 117 -------------------------------------------------------~~~D~vin~~~~-~~~~~y~~~~~~ 140 (279)
T TIGR03590 117 -------------------------------------------------------HDCDLLLDQNLG-ADASDYQGLVPA 140 (279)
T ss_pred -------------------------------------------------------cCCCEEEeCCCC-cCHhHhcccCcC
Confidence 012222222111 110 0011 111
Q ss_pred -CeeeeCc---cCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC--CCCEEEEE
Q 012594 235 -NILTIGP---LLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL--QQPFLWVV 308 (460)
Q Consensus 235 -~~~~vGp---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~ 308 (460)
..+..|| +..++-. .... .....++.+.|++++|.... .+....+++++... +.++.+++
T Consensus 141 ~~~~l~G~~Y~~lr~eF~--------~~~~----~~~~~~~~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~ 206 (279)
T TIGR03590 141 NCRLLLGPSYALLREEFY--------QLAT----ANKRRKPLRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVT 206 (279)
T ss_pred CCeEEecchHHhhhHHHH--------HhhH----hhhcccccCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEE
Confidence 2456676 3322110 0000 00011123579999996433 33445566776554 34666777
Q ss_pred cCCCCccccCCCchhHHhh--hCCCcEEeeccCch-hhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHH
Q 012594 309 RPDFMNKSHAKLPDGFVER--VSDRGKLVEWAPQE-KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRN 385 (460)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~-~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~ 385 (460)
+... ...+.+.+. ..+|+.+..|+++. ++|..+++ +|++|| +|+.|++++|+|+|++|...+|..||+
T Consensus 207 G~~~------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~ 277 (279)
T TIGR03590 207 GSSN------PNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQ 277 (279)
T ss_pred CCCC------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhh
Confidence 6541 122222221 24688999999986 79977666 999999 999999999999999999999999987
Q ss_pred H
Q 012594 386 Y 386 (460)
Q Consensus 386 ~ 386 (460)
.
T Consensus 278 ~ 278 (279)
T TIGR03590 278 Q 278 (279)
T ss_pred h
Confidence 5
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.70 E-value=5.7e-15 Score=130.95 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=195.9
Q ss_pred CCCEEEEEcC--CCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCC--CcC
Q 012594 3 REPHVLVIPF--PAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESH--EAD 76 (460)
Q Consensus 3 ~~~~Il~~~~--~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 76 (460)
+++||+|.+. .+.||+.++..||..|.+. |.+|++++...-.....-. .+++++.+|.-.... +..
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~--------~gVd~V~LPsl~k~~~G~~~ 79 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP--------AGVDFVKLPSLIKGDNGEYG 79 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc--------ccCceEecCceEecCCCcee
Confidence 4569999997 4889999999999999988 9999999987765544332 489999998321111 101
Q ss_pred cccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHH-----HHHHHh--CCceEEEcccchHHHHHHH
Q 012594 77 RRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWAL-----EVAEQM--GIARAAVIPYAPASLALVL 149 (460)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~-----~~A~~l--giP~v~~~~~~~~~~~~~~ 149 (460)
..+.-.-...+.+.-...+...++. .+||++|+|.+-+... .+++.. +-+++.
T Consensus 80 ~~d~~~~l~e~~~~Rs~lil~t~~~-------fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL------------- 139 (400)
T COG4671 80 LVDLDGDLEETKKLRSQLILSTAET-------FKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVL------------- 139 (400)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHh-------cCCCEEEEeccccchhhhhhHHHHHHhhcCCccee-------------
Confidence 1111000222222222333444444 9999999997555310 011000 101100
Q ss_pred hhhhHhhhcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccc
Q 012594 150 HAPKLVEAGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPA 229 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~ 229 (460)
+..+ ..+.+ ........+....... -+..|.+++-++|.|--+.
T Consensus 140 --------------~lr~---------------i~D~p-~~~~~~w~~~~~~~~I------~r~yD~V~v~GdP~f~d~~ 183 (400)
T COG4671 140 --------------GLRS---------------IRDIP-QELEADWRRAETVRLI------NRFYDLVLVYGDPDFYDPL 183 (400)
T ss_pred --------------ehHh---------------hhhch-hhhccchhhhHHHHHH------HHhheEEEEecCccccChh
Confidence 0000 00011 0000000111111111 1345788888888764432
Q ss_pred ccc------CCCeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHh-CCC
Q 012594 230 CDL------IPNILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLES-LQQ 302 (460)
Q Consensus 230 ~~~------~p~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~ 302 (460)
..+ ..+++|+|.+. ++ .++. +.+ +... +++.-|+||.|... ...+.+...++|-.. .+.
T Consensus 184 ~~~~~~~~i~~k~~ytG~vq-~~-~~~~-----~~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l 249 (400)
T COG4671 184 TEFPFAPAIRAKMRYTGFVQ-RS-LPHL-----PLP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGL 249 (400)
T ss_pred hcCCccHhhhhheeEeEEee-cc-CcCC-----CCC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCC
Confidence 221 23789999882 22 2110 010 1111 33448999888743 356777777777654 333
Q ss_pred C--EEEEEcCCCCccccCCCchh----HHhhhC--CCcEEeeccCch-hhcCCCcccceeeccChhhhhHhhhcCCceee
Q 012594 303 P--FLWVVRPDFMNKSHAKLPDG----FVERVS--DRGKLVEWAPQE-KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLC 373 (460)
Q Consensus 303 ~--~i~~~~~~~~~~~~~~~~~~----~~~~~~--~~v~~~~~~p~~-~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~ 373 (460)
+ .+++++.. .|.. +....+ +++.+..|..+. .++.-+ +.+|+-||+||+.|-|.+|+|.++
T Consensus 250 ~~~~~ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA--~~vVSm~GYNTvCeILs~~k~aLi 319 (400)
T COG4671 250 NHKWLIVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGA--RLVVSMGGYNTVCEILSFGKPALI 319 (400)
T ss_pred CcceEEEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhh--heeeecccchhhhHHHhCCCceEE
Confidence 3 34444432 2332 222223 778888887765 588554 459999999999999999999999
Q ss_pred cccc---chhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 374 WPYF---ADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 374 ~P~~---~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
+|.. -||-.-|+|+++ ||+.-.+.. .+++++.++++|...++-+
T Consensus 320 vPr~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 320 VPRAAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred eccCCCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 9985 499999999999 999999987 7899999999999999733
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=1.9e-14 Score=138.97 Aligned_cols=351 Identities=15% Similarity=0.083 Sum_probs=174.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
+||+|...++.||+.|.. ++++|+++++++.++..... .+++...+ .+++++.++. ..+...+
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~l~~---------~g~~~~~ 64 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCE-----SLFDMEELAV---------MGLVEVL 64 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCc-----cccCHHHhhh---------ccHHHHH
Confidence 389999999999999999 99999998888888765332 24333110 1233322221 1111212
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCc-chH--HHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCC
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTV-GWA--LEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLD 161 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~-~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
..... ....+..+.+.++. .+||+|++-.+. .+. ...|...|||++.......+
T Consensus 65 ~~~~~-~~~~~~~~~~~l~~----~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~------------------ 121 (380)
T PRK00025 65 PRLPR-LLKIRRRLKRRLLA----EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW------------------ 121 (380)
T ss_pred HHHHH-HHHHHHHHHHHHHH----cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh------------------
Confidence 22111 11223334444444 999998874322 233 33467789998864221100
Q ss_pred CCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeeeeCc
Q 012594 162 SNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILTIGP 241 (460)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~vGp 241 (460)
.+. .. .... ....+|.++..+...-+.- ....-++.++|.
T Consensus 122 ---------------------------~~~-~~-----~~~~------~~~~~d~i~~~~~~~~~~~-~~~g~~~~~~G~ 161 (380)
T PRK00025 122 ---------------------------AWR-QG-----RAFK------IAKATDHVLALFPFEAAFY-DKLGVPVTFVGH 161 (380)
T ss_pred ---------------------------hcC-ch-----HHHH------HHHHHhhheeCCccCHHHH-HhcCCCeEEECc
Confidence 000 00 0000 0122344444443221110 111112566663
Q ss_pred cCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCccc
Q 012594 242 LLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRPDFMNKS 316 (460)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~ 316 (460)
...+.... .+....+...+...+++++|++..||...........++++++.+ +.++++..+..
T Consensus 162 p~~~~~~~------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~----- 230 (380)
T PRK00025 162 PLADAIPL------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP----- 230 (380)
T ss_pred CHHHhccc------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-----
Confidence 32221100 001111222233223455677777764322122344455555322 23455554312
Q ss_pred cCCCchhHHhhh----CCCcEEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccc--------hhhhh-
Q 012594 317 HAKLPDGFVERV----SDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFA--------DQYQN- 383 (460)
Q Consensus 317 ~~~~~~~~~~~~----~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~--------dQ~~~- 383 (460)
...+.+.+.. .-++.+..- .-..+++.+++ +|+-+|.+++ |++++|+|+|++|... .|..|
T Consensus 231 --~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~ 304 (380)
T PRK00025 231 --KRREQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVP 304 (380)
T ss_pred --hhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCC
Confidence 0111122111 113333221 12457866666 9999998887 9999999999985432 12111
Q ss_pred ----HHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012594 384 ----RNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKA 457 (460)
Q Consensus 384 ----a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 457 (460)
+..+.+. +++..+.- ...+++.|.+++.++++|++.+++..+-.+.+++.. ..+...+.++.+.+.+.+
T Consensus 305 ~~~l~~~~~~~-~~~~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 305 YVSLPNLLAGR-ELVPELLQ---EEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred eeehHHHhcCC-CcchhhcC---CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 2333331 33333322 556899999999999999977665555544444433 356666666666655544
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=1.2e-13 Score=133.19 Aligned_cols=164 Identities=12% Similarity=0.162 Sum_probs=108.4
Q ss_pred CCCcEEEEEcCCCcCCCHHHHHHHHHHH-Hh-CCCCEEEEEcCCCCccccCCCchhHHhh--hCCCcEEeeccCch-hhc
Q 012594 270 AVGSVIYVAFGSVAVLSQEQLEELALGL-ES-LQQPFLWVVRPDFMNKSHAKLPDGFVER--VSDRGKLVEWAPQE-KVL 344 (460)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~-~ll 344 (460)
+++++|++..|+... .+.+..+++++ +. .+.+++++.+.+. .+.+.+.+. ..+++.+.+|+++. +++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~------~l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK------ELKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH------HHHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 345688888888652 24455555554 22 2346666655331 111122211 23578888999754 689
Q ss_pred CCCcccceeeccChhhhhHhhhcCCceeec-cccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHH
Q 012594 345 GHPSVACFLSHCGWNSTLEGLSMGVPFLCW-PYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGI 423 (460)
Q Consensus 345 ~~~~~~~~I~hgG~~sv~eal~~GvP~i~~-P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 423 (460)
+.+++ +|+.+|..|+.||+++|+|+|++ |...+|..|+..+.+ .|+|+... +.+++.++|.++++|++.
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~~~i~~ll~~~~~ 341 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAIKIVASLTNGNEQ 341 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHHHHHHHHhcCHHH
Confidence 77776 99998889999999999999998 776778899999999 59998762 688899999999988754
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012594 424 KANALKMKQMARKSLVEGGSSFRNFESFVSQL 455 (460)
Q Consensus 424 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 455 (460)
+ ++|++..++. .+..+..+-++.+++.+
T Consensus 342 ~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 342 L---TNMISTMEQD-KIKYATQTICRDLLDLI 369 (391)
T ss_pred H---HHHHHHHHHh-cCCCCHHHHHHHHHHHh
Confidence 4 3444444432 12344444444444443
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.56 E-value=1.4e-12 Score=125.67 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=96.6
Q ss_pred hccCCCCcEEEEEcCCCcCCCHH-HHHHHHHHHH-----hCCCCEEEEEcCCCCccccCCCchhHHhh-hCCCcEEeecc
Q 012594 266 LDKQAVGSVIYVAFGSVAVLSQE-QLEELALGLE-----SLQQPFLWVVRPDFMNKSHAKLPDGFVER-VSDRGKLVEWA 338 (460)
Q Consensus 266 l~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~a~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 338 (460)
+.-.+++++|++..|+....... .++.+...+. ..+.+++++++.+. .+.+.+.+. ...++++.+|+
T Consensus 200 ~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~------~~~~~L~~~~~~~~v~~~G~~ 273 (382)
T PLN02605 200 LGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK------KLQSKLESRDWKIPVKVRGFV 273 (382)
T ss_pred cCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH------HHHHHHHhhcccCCeEEEecc
Confidence 33334456777766654432222 2233322220 12345666666441 111112111 13468889999
Q ss_pred Cch-hhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhh-hhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHH
Q 012594 339 PQE-KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQY-QNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKA 416 (460)
Q Consensus 339 p~~-~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~-~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~ 416 (460)
++. ++|..+++ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+. |.|+.. -+++.|.++|.+
T Consensus 274 ~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i~~ 343 (382)
T PLN02605 274 TNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIVAE 343 (382)
T ss_pred ccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHHHH
Confidence 865 68877666 999999999999999999999998766665 789989884 999865 268999999999
Q ss_pred HhcC-hHHHHHHHHHHH
Q 012594 417 LLND-GGIKANALKMKQ 432 (460)
Q Consensus 417 ~l~~-~~~~~~a~~l~~ 432 (460)
++.| ++.+++..+-+.
T Consensus 344 ll~~~~~~~~~m~~~~~ 360 (382)
T PLN02605 344 WFGDKSDELEAMSENAL 360 (382)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 9987 554444333333
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.56 E-value=1.4e-12 Score=125.25 Aligned_cols=334 Identities=13% Similarity=0.039 Sum_probs=179.7
Q ss_pred CCccChHHHHHHHHHHHh--CCCEEE---EEeCccchh--HHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 13 PAQGHAGPLMKLSTKIAE--HGIKVT---FVSTEHMHA--KITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 13 ~~~gH~~p~~~La~~L~~--rGh~V~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
.++|-=.-.++||++|++ .|++|. ++++..-.+ .+... | .+..+| .+.+........+.
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~---------g-~~~~~~----sgg~~~~~~~~~~~ 70 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPII---------G-PTKELP----SGGFSYQSLRGLLR 70 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCcee---------C-CCCCCC----CCCccCCCHHHHHH
Confidence 566777778899999998 699999 888865432 11111 3 444444 22213334444444
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCC--CccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCC
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCE--KISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSN 163 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~--~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
...+.+-..+..-+..++. + +||+||+-.-+. ...+|...|+|++.+.+.-.-... ....
T Consensus 71 ~~~~gl~~~~~~~~~~~~~----~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~-------------~~~~ 132 (396)
T TIGR03492 71 DLRAGLVGLTLGQWRALRK----WAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW-------------ESGP 132 (396)
T ss_pred HHHhhHHHHHHHHHHHHHH----HhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee-------------cCCC
Confidence 4433122223333333444 5 899999886555 788889999999985433221000 0000
Q ss_pred CCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHh-hcccccEEEEccccccCccccccCCCeeeeCcc
Q 012594 164 GNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQ-NLKISNWILCNSFYELDPPACDLIPNILTIGPL 242 (460)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~le~~~~~~~p~~~~vGp~ 242 (460)
+. ...+....+||....+ + . ... .-+.++.++..+...-+.- ....-++.++|--
T Consensus 133 ~~-~~~~~~~~~~G~~~~p-----------------~-e----~n~l~~~~a~~v~~~~~~t~~~l-~~~g~k~~~vGnP 188 (396)
T TIGR03492 133 RR-SPSDEYHRLEGSLYLP-----------------W-E----RWLMRSRRCLAVFVRDRLTARDL-RRQGVRASYLGNP 188 (396)
T ss_pred CC-ccchhhhccCCCccCH-----------------H-H----HHHhhchhhCEEeCCCHHHHHHH-HHCCCeEEEeCcC
Confidence 00 0000011112211000 0 0 000 1134566666553332221 1122378899955
Q ss_pred CCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC----CCCEEEEEcCCCCccccC
Q 012594 243 LGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL----QQPFLWVVRPDFMNKSHA 318 (460)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~ 318 (460)
..+.... .... . + .+++++|.+--||-..-..+.+..+++++..+ +.++++.+.+.... .
T Consensus 189 v~d~l~~--------~~~~--~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~---~ 252 (396)
T TIGR03492 189 MMDGLEP--------PERK--P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL---E 252 (396)
T ss_pred HHhcCcc--------cccc--c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH---H
Confidence 5443321 0000 1 1 22345888888886332333445566666543 45677776433111 0
Q ss_pred CCchhHHh-hh--------------CCCcEEeeccCc-hhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhh
Q 012594 319 KLPDGFVE-RV--------------SDRGKLVEWAPQ-EKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQ 382 (460)
Q Consensus 319 ~~~~~~~~-~~--------------~~~v~~~~~~p~-~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~ 382 (460)
.+...+.+ .. ..++.+..+..+ ..+++.+++ +|+-+|..| .|+..+|+|+|++|+...|.
T Consensus 253 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~- 328 (396)
T TIGR03492 253 KLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF- 328 (396)
T ss_pred HHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-
Confidence 01000000 00 123455555433 468877666 999999777 99999999999999887787
Q ss_pred hHHHHHhhh----cceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHH
Q 012594 383 NRNYIFDAW----KIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANAL 428 (460)
Q Consensus 383 ~a~~v~~~l----g~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 428 (460)
|+...++ . |.++.+. ..+.+.|.+++.++++|++.+++..
T Consensus 329 na~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 329 TYGFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred HHHHHHh-hHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 8877664 2 6666652 3456999999999999886654444
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.53 E-value=1.1e-11 Score=118.59 Aligned_cols=345 Identities=14% Similarity=0.070 Sum_probs=177.7
Q ss_pred EEEEEcC---C-CccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHH
Q 012594 6 HVLVIPF---P-AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLH 81 (460)
Q Consensus 6 ~Il~~~~---~-~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 81 (460)
||++++. | ..|+...+..|+++|+++||+|++++.......-... ....+..++...... .. .
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~--~- 67 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--------RVVPVPSVPLPGYPE--IR--L- 67 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--------CceeecccccCcccc--eE--e-
Confidence 4565552 2 3799999999999999999999999986543211000 011111111000000 00 0
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc---hHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhc
Q 012594 82 KVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG---WALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAG 158 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
.. .....+...++. .+||+|++..... .+..+++..++|++.............
T Consensus 68 -----~~-~~~~~~~~~~~~-------~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------- 124 (364)
T cd03814 68 -----AL-PPRRRVRRLLDA-------FAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRY---------- 124 (364)
T ss_pred -----cc-cchhhHHHHHHh-------cCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhh----------
Confidence 00 001122333333 8999998764333 445677889999987654332110000
Q ss_pred CCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCeee
Q 012594 159 LLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNILT 238 (460)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~~ 238 (460)
.. . .. .......... .....+|.+++.+....+.-.....+++..
T Consensus 125 -------------------~~-------~-~~-----~~~~~~~~~~---~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~ 169 (364)
T cd03814 125 -------------------YG-------L-GP-----LSWLAWAYLR---WFHNRADRVLVPSPSLADELRARGFRRVRL 169 (364)
T ss_pred -------------------cc-------c-ch-----HhHhhHHHHH---HHHHhCCEEEeCCHHHHHHHhccCCCceee
Confidence 00 0 00 0000001111 123467888887776654221112233444
Q ss_pred eCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcC-CCHHHHHHHHHHHHhC-CCCEEEEEcCCCCccc
Q 012594 239 IGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAV-LSQEQLEELALGLESL-QQPFLWVVRPDFMNKS 316 (460)
Q Consensus 239 vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~ 316 (460)
+.+......... ........+-+. ..++.+++..|+... ...+.+.+++..+... +.++++...+. .
T Consensus 170 ~~~g~~~~~~~~-----~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~-~--- 238 (364)
T cd03814 170 WPRGVDTELFHP-----RRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP-A--- 238 (364)
T ss_pred cCCCccccccCc-----ccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc-h---
Confidence 332221111100 000111011111 123366777777532 2233333333333322 33444443322 0
Q ss_pred cCCCchhHHhhhCCCcEEeeccCchh---hcCCCcccceeeccC----hhhhhHhhhcCCceeeccccchhhhhHHHHHh
Q 012594 317 HAKLPDGFVERVSDRGKLVEWAPQEK---VLGHPSVACFLSHCG----WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFD 389 (460)
Q Consensus 317 ~~~~~~~~~~~~~~~v~~~~~~p~~~---ll~~~~~~~~I~hgG----~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~ 389 (460)
.+.+. ....|+.+.+++++.+ ++..+++ +|+.+. .++++||+++|+|+|+.+.. .+...+.+
T Consensus 239 ----~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~ 307 (364)
T cd03814 239 ----RARLE-ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD 307 (364)
T ss_pred ----HHHHh-ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC
Confidence 01111 2357899999998765 7867666 886654 47899999999999998655 35566666
Q ss_pred hhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012594 390 AWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVS 453 (460)
Q Consensus 390 ~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 453 (460)
. +.|..+. ..+.+++.++|.+++.|++.+++..+-+.+..+ .-+.....+.+++
T Consensus 308 ~-~~g~~~~-----~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 361 (364)
T cd03814 308 G-ENGLLVE-----PGDAEAFAAALAALLADPELRRRMAARARAEAE----RRSWEAFLDNLLE 361 (364)
T ss_pred C-cceEEcC-----CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----hcCHHHHHHHHHH
Confidence 4 8898883 457888999999999998766555544444432 3444444555444
No 44
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=8.9e-16 Score=129.77 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=94.5
Q ss_pred EEEEEcCCCcCCC-HHHHHHHHHHHHh--CCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccC-chhhcCCCcc
Q 012594 274 VIYVAFGSVAVLS-QEQLEELALGLES--LQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAP-QEKVLGHPSV 349 (460)
Q Consensus 274 ~v~vs~Gs~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~ll~~~~~ 349 (460)
+|+|+.||..... .+.+..+...+.. ...++++.++.... ......+. ....++.+.+|.+ ..+++..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~----~~~~~~~~-~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY----EELKIKVE-NFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC----HHHCCCHC-CTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH----HHHHHHHh-ccCCcEEEEechhhHHHHHHHcCE
Confidence 5899999864311 1112223333322 24677877775511 11111110 1126789999999 5679977776
Q ss_pred cceeeccChhhhhHhhhcCCceeeccccc----hhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHH
Q 012594 350 ACFLSHCGWNSTLEGLSMGVPFLCWPYFA----DQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGI 423 (460)
Q Consensus 350 ~~~I~hgG~~sv~eal~~GvP~i~~P~~~----dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 423 (460)
+|||||.||+.|++++|+|+|++|... +|..||..+++ .|+|..+.. ...+.+.|.++|.+++.++..
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SCCCHHHHHHCHCCCHH-
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCHHHHHHHHHHHHcCcHH
Confidence 999999999999999999999999988 99999999999 599999975 666789999999999988764
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.49 E-value=1.8e-13 Score=112.02 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=83.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQS 86 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (460)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|++++... ... ...........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~-~~~-~~~~~~~~~~~ 69 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDS-RLP-RSLEPLANLRR 69 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCG-GGG-HHHHHHHHHHC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCc-CcC-cccchhhhhhh
Confidence 78999999999999999999999999999999999999999887 99999998761 000 00011111111
Q ss_pred HHhh--chHHHHHHHHHHhh-----cCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchH
Q 012594 87 MLTV--MPGCLRNLIEKVNK-----SNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPA 143 (460)
Q Consensus 87 ~~~~--~~~~~~~~l~~l~~-----~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 143 (460)
..+. ......+.++.... ..+....|+++++.....+..+|+++|||++.....+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 70 LARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1111 01112222222111 111146888888887778999999999999998777654
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.47 E-value=1.3e-10 Score=112.91 Aligned_cols=89 Identities=22% Similarity=0.239 Sum_probs=63.7
Q ss_pred CCCcEEeeccCchh---hcCCCcccceeec-cC-hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLSH-CG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~h-gG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
.++|.+.+++|+.+ +|..+++-++.+. .| ..++.||+++|+|+|+. |.......+.+. ..|..++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~----- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVD----- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcC-----
Confidence 46789999999865 6666666222232 22 35889999999999987 444566666653 5788774
Q ss_pred ccCHHHHHHHHHHHhcChHHHHHH
Q 012594 404 IITRQEIQRQVKALLNDGGIKANA 427 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~~~~~~~~a 427 (460)
.-+.++++++|.++++|++.+++.
T Consensus 350 ~~d~~~la~~i~~ll~~~~~~~~l 373 (396)
T cd03818 350 FFDPDALAAAVIELLDDPARRARL 373 (396)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHH
Confidence 347999999999999988654443
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.46 E-value=1.4e-10 Score=114.79 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=86.9
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCccccCCCchhHHhh-hCCCcEEeeccCchh---hcCCCc
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESL-QQPFLWVVRPDFMNKSHAKLPDGFVER-VSDRGKLVEWAPQEK---VLGHPS 348 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~---ll~~~~ 348 (460)
.+++..|+.. ..+.+..++++++.. +.+++++ +++ ...+.+.+. ...++.+.+++++.+ ++..++
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G-------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDG-------PYREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCC-------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 5566678753 345566677887665 3455544 332 111222221 135788999998654 776666
Q ss_pred ccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHh---hhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFD---AWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~---~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
+ +|.- |-..+++||+++|+|+|+.... .....+.+ . +.|..++. -+.+.++++|.++++|+
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADP 401 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCH
Confidence 6 7743 2245789999999999987543 33444443 4 77888843 47899999999999988
Q ss_pred HHHHHHHHHHH
Q 012594 422 GIKANALKMKQ 432 (460)
Q Consensus 422 ~~~~~a~~l~~ 432 (460)
+.+++..+-+.
T Consensus 402 ~~~~~~~~~a~ 412 (465)
T PLN02871 402 ELRERMGAAAR 412 (465)
T ss_pred HHHHHHHHHHH
Confidence 65544444333
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.43 E-value=1.1e-10 Score=112.64 Aligned_cols=354 Identities=16% Similarity=0.068 Sum_probs=172.6
Q ss_pred EEEEEcCC----CccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHH
Q 012594 6 HVLVIPFP----AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLH 81 (460)
Q Consensus 6 ~Il~~~~~----~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 81 (460)
||++++.. ..|+......+++.|+++||+|++++....................+++++.++....... ...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKN----GLL 76 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCcc----chH
Confidence 46666643 2599999999999999999999999876543322110000001123666666554322111 111
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc----hHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhh
Q 012594 82 KVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG----WALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEA 157 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (460)
..+.............+.. .. .+||+|++..... .+..++...++|++.............
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~----~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--------- 141 (394)
T cd03794 77 KRLLNYLSFALSALLALLK--RR----RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVA--------- 141 (394)
T ss_pred HHHHhhhHHHHHHHHHHHh--cc----cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHH---------
Confidence 1111111111111111111 23 8899999996222 334456666999997554321100000
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHH-HhhcccccEEEEccccccCccc-ccc-CC
Q 012594 158 GLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAV-AQNLKISNWILCNSFYELDPPA-CDL-IP 234 (460)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~le~~~-~~~-~p 234 (460)
. ....... ......... ...+..+|.++..+....+.-. ... ..
T Consensus 142 -----------------~-------------~~~~~~~---~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~ 188 (394)
T cd03794 142 -----------------L-------------GLLKNGS---LLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPE 188 (394)
T ss_pred -----------------c-------------cCccccc---hHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcC
Confidence 0 0000000 000111111 1124567888877766544321 111 12
Q ss_pred CeeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcC-CCHHHHHHHHHHHHhC-CCCEEEEEcCCC
Q 012594 235 NILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAV-LSQEQLEELALGLESL-QQPFLWVVRPDF 312 (460)
Q Consensus 235 ~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~ 312 (460)
++..+........... .......... ....++.+++..|+... ...+.+...+..+... +.++++ ++.+.
T Consensus 189 ~~~~i~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~ 260 (394)
T cd03794 189 KISVIPNGVDLELFKP-----PPADESLRKE--LGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGP 260 (394)
T ss_pred ceEEcCCCCCHHHcCC-----ccchhhhhhc--cCCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcc
Confidence 4444433222111100 0000000011 11234477777887643 2223333333333332 334433 33221
Q ss_pred CccccCCCchhHHhhhCCCcEEeeccCchh---hcCCCcccceeeccC---------hhhhhHhhhcCCceeeccccchh
Q 012594 313 MNKSHAKLPDGFVERVSDRGKLVEWAPQEK---VLGHPSVACFLSHCG---------WNSTLEGLSMGVPFLCWPYFADQ 380 (460)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---ll~~~~~~~~I~hgG---------~~sv~eal~~GvP~i~~P~~~dQ 380 (460)
. ...+.+.......+|+.+.+++++.+ ++..+++ +|.... .+++.||+++|+|+|+.+....+
T Consensus 261 ~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~ 335 (394)
T cd03794 261 E---KEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA 335 (394)
T ss_pred c---HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch
Confidence 0 00111100112347889999998765 6766666 664322 34579999999999999766544
Q ss_pred hhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012594 381 YQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMA 434 (460)
Q Consensus 381 ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 434 (460)
. .+.+. +.|..++. -+.++++++|.++++|++.+++..+-+.+.
T Consensus 336 ~----~~~~~-~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 379 (394)
T cd03794 336 E----LVEEA-GAGLVVPP-----GDPEALAAAILELLDDPEERAEMGENGRRY 379 (394)
T ss_pred h----hhccC-CcceEeCC-----CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 4 33442 67777742 378999999999998886555544444333
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.42 E-value=2.5e-10 Score=109.02 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=84.7
Q ss_pred CcEEEEEcCCCcCCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchh---hcC
Q 012594 272 GSVIYVAFGSVAVLSQEQLEELALGLESL---QQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEK---VLG 345 (460)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---ll~ 345 (460)
++.+++..|+... .+.+..++++++.+ +.++++....... ...........++.+.+++++.+ ++.
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~G~~~~~------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIVGNGLEL------EEESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEEcCchhh------hHHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 3467777787532 23344455555433 4555544332200 00000001247888999998665 677
Q ss_pred CCcccceee-----ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcC
Q 012594 346 HPSVACFLS-----HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLND 420 (460)
Q Consensus 346 ~~~~~~~I~-----hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 420 (460)
.+++ +|+ -|...++.||+++|+|+|+.+. ......+.+. +.|..+. .-+.++++++|.++++|
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~-----~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFP-----PGDAEDLAAALERLIDD 329 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEEC-----CCCHHHHHHHHHHHHhC
Confidence 7666 663 2334589999999999999754 4566667663 6788884 34689999999999998
Q ss_pred hHHHHHHH
Q 012594 421 GGIKANAL 428 (460)
Q Consensus 421 ~~~~~~a~ 428 (460)
++.++.+.
T Consensus 330 ~~~~~~~~ 337 (359)
T cd03823 330 PDLLERLR 337 (359)
T ss_pred hHHHHHHH
Confidence 76444433
No 50
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=6.6e-10 Score=107.00 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=72.6
Q ss_pred CCCcEEeeccCch-hhcCCCccccee----eccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 329 SDRGKLVEWAPQE-KVLGHPSVACFL----SHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 329 ~~~v~~~~~~p~~-~ll~~~~~~~~I----~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
.+++.+.++.+.. .++..+++ +| +-|...++.||+++|+|+|+. |....+..+.+. ..|..++
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~~----- 319 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLVD----- 319 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEcC-----
Confidence 4678888887653 57866666 66 334456999999999999997 444566677663 6787774
Q ss_pred ccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012594 404 IITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQL 455 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 455 (460)
.-+.++++++|.++++|++.+++..+-+.+. ..+.-+...-++.+.+-+
T Consensus 320 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y 368 (371)
T cd04962 320 VGDVEAMAEYALSLLEDDELWQEFSRAARNR---AAERFDSERIVPQYEALY 368 (371)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHH
Confidence 2478999999999998876444433333222 111344444455554443
No 51
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=1e-10 Score=101.08 Aligned_cols=297 Identities=15% Similarity=0.101 Sum_probs=184.9
Q ss_pred CEEEEEcCC----CccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH
Q 012594 5 PHVLVIPFP----AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL 80 (460)
Q Consensus 5 ~~Il~~~~~----~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (460)
|||+|.+-+ ++||+.+++.||++|.++|..++|++.+...+.+.+.. .++.+... ...
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~~---------~~~-- 62 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLEG---------RGN-- 62 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccceee---------ecc--
Confidence 478888754 78999999999999999999999999977666443221 02221000 000
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchH---HHHHHHhCCceEEEcccchHHHHHHHhhhhHhhh
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA---LEVAEQMGIARAAVIPYAPASLALVLHAPKLVEA 157 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~---~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (460)
. .+++ .++|++|.|.+...+ ..+....+.+.+++-........-
T Consensus 63 ----------------n---~ik~----~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d---------- 109 (318)
T COG3980 63 ----------------N---LIKE----EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKD---------- 109 (318)
T ss_pred ----------------c---cccc----ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhh----------
Confidence 0 3334 899999999877744 456678899999765443321110
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCe-
Q 012594 158 GLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNI- 236 (460)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~- 236 (460)
.++.-+.... .+... .-.+.+.
T Consensus 110 --------------------------~d~ivN~~~~-------------------------a~~~y------~~v~~k~~ 132 (318)
T COG3980 110 --------------------------NDLIVNAILN-------------------------ANDYY------GLVPNKTR 132 (318)
T ss_pred --------------------------hHhhhhhhhc-------------------------chhhc------cccCcceE
Confidence 0000000000 00000 0111122
Q ss_pred eeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccc
Q 012594 237 LTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKS 316 (460)
Q Consensus 237 ~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 316 (460)
++.||-...-+.. |....+ +-+. + +..-|+|++|. ..+....-+++..+.+.++.+-++++..
T Consensus 133 ~~lGp~y~~lr~e-----F~~~r~---~~~~-r-~~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~----- 195 (318)
T COG3980 133 YYLGPGYAPLRPE-----FYALRE---ENTE-R-PKRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSS----- 195 (318)
T ss_pred EEecCCceeccHH-----HHHhHH---HHhh-c-chheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCC-----
Confidence 5566544322110 000111 0111 1 22369999996 4345567778888887776665555522
Q ss_pred cCCCchhHHhhh--CCCcEEeeccC-chhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcc
Q 012594 317 HAKLPDGFVERV--SDRGKLVEWAP-QEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKI 393 (460)
Q Consensus 317 ~~~~~~~~~~~~--~~~v~~~~~~p-~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~ 393 (460)
.+.+.++.++. .+|+.+..... ...++..+++ .|+-||+ |+.|++.-|+|.+++|+...|.--|...+. +|+
T Consensus 196 -~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~ 270 (318)
T COG3980 196 -NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGI 270 (318)
T ss_pred -CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCc
Confidence 33444544433 35666655444 3458977665 9998775 899999999999999999999999999987 699
Q ss_pred eeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 012594 394 GLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMAR 435 (460)
Q Consensus 394 g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~ 435 (460)
-..+.. .++.+.....+.++.+|...|.+...-++.+.
T Consensus 271 ~~~l~~----~l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i~ 308 (318)
T COG3980 271 IKQLGY----HLKDLAKDYEILQIQKDYARRKNLSFGSKLIG 308 (318)
T ss_pred hhhccC----CCchHHHHHHHHHhhhCHHHhhhhhhccceee
Confidence 888853 37888899999999999888877766555443
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.36 E-value=9.5e-10 Score=107.18 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=56.6
Q ss_pred CCcEEe-eccCchh---hcCCCcccceee-c------cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEee
Q 012594 330 DRGKLV-EWAPQEK---VLGHPSVACFLS-H------CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFF 398 (460)
Q Consensus 330 ~~v~~~-~~~p~~~---ll~~~~~~~~I~-h------gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~ 398 (460)
+++.+. +|+|..+ +|+.+++ ++. + |-.+++.||+++|+|+|+.. .....+.+++. +.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcCC-CCEEEE-
Confidence 455544 7888665 6767776 653 1 12457999999999999974 34566677764 788887
Q ss_pred cCCCCccCHHHHHHHHHHHhcC
Q 012594 399 PDENGIITRQEIQRQVKALLND 420 (460)
Q Consensus 399 ~~~~~~~~~~~l~~~i~~~l~~ 420 (460)
+ +.++++++|.++++|
T Consensus 366 ----~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 366 ----G--DSEELAEQLIDLLSN 381 (415)
T ss_pred ----C--CHHHHHHHHHHHHhc
Confidence 2 689999999999998
No 53
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.35 E-value=1.2e-09 Score=106.20 Aligned_cols=335 Identities=14% Similarity=0.125 Sum_probs=167.3
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchH
Q 012594 14 AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPG 93 (460)
Q Consensus 14 ~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
..|.-..+..|+++|+++||+|++++........... ....++.++.++....... .......... .
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~ 86 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPAEYL-PKEELWPYLD-------E 86 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccccccCC-ChhhcchhHH-------H
Confidence 4678889999999999999999999875432211100 1123677766653211110 1111111111 1
Q ss_pred HHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCCCCCCCCCc
Q 012594 94 CLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGNAMTDEP 171 (460)
Q Consensus 94 ~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (460)
....++..++... .+||+|++..... .+..+++.+|+|+|...+.....
T Consensus 87 ~~~~~~~~~~~~~--~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------------------- 137 (398)
T cd03800 87 FADDLLRFLRREG--GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV--------------------------- 137 (398)
T ss_pred HHHHHHHHHHhcC--CCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc---------------------------
Confidence 1223333333311 2899999875333 45667888999998643321100
Q ss_pred ccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCcccccc---CCCeeeeCccCCCCCc
Q 012594 172 ILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDL---IPNILTIGPLLGRDHL 248 (460)
Q Consensus 172 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~---~p~~~~vGp~~~~~~~ 248 (460)
...... .. ... . ...........+..+|.++..+....+.-.... ..++..+.+-......
T Consensus 138 --~~~~~~------~~-~~~-~------~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~ 201 (398)
T cd03800 138 --KRRHLG------AA-DTY-E------PARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERF 201 (398)
T ss_pred --CCcccc------cc-ccc-c------hhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccce
Confidence 000000 00 000 0 000000011134567887777765422211111 1124444332221111
Q ss_pred cCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCccccCCCc--
Q 012594 249 EHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRPDFMNKSHAKLP-- 321 (460)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~-- 321 (460)
.. ..........+...+ ...+++..|+... .+.+..+++++..+ +.+++++.+...... .....
T Consensus 202 ~~-----~~~~~~~~~~~~~~~-~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~-~~~~~~~ 272 (398)
T cd03800 202 TP-----YGRAEARRARLLRDP-DKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDIL-AMDEEEL 272 (398)
T ss_pred ec-----ccchhhHHHhhccCC-CCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcch-hhhhHHH
Confidence 00 000000011111222 2366777887642 23344455555433 345555543321100 00000
Q ss_pred hhHHhh--hCCCcEEeeccCchh---hcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhc
Q 012594 322 DGFVER--VSDRGKLVEWAPQEK---VLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK 392 (460)
Q Consensus 322 ~~~~~~--~~~~v~~~~~~p~~~---ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg 392 (460)
..+.+. ...++.+.+|+|+.+ ++..+++ +++. |-..++.||+++|+|+|+.+.. .....+.+. +
T Consensus 273 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~ 345 (398)
T cd03800 273 RELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-V 345 (398)
T ss_pred HHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-C
Confidence 001111 236788999999865 5766666 7643 3346899999999999987543 455567663 7
Q ss_pred ceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHH
Q 012594 393 IGLRFFPDENGIITRQEIQRQVKALLNDGGIKANA 427 (460)
Q Consensus 393 ~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a 427 (460)
.|..++ .-+.++++++|.++++|++.+++.
T Consensus 346 ~g~~~~-----~~~~~~l~~~i~~l~~~~~~~~~~ 375 (398)
T cd03800 346 TGLLVD-----PRDPEALAAALRRLLTDPALRRRL 375 (398)
T ss_pred CeEEeC-----CCCHHHHHHHHHHHHhCHHHHHHH
Confidence 888884 346999999999999887544333
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.34 E-value=2.3e-09 Score=102.36 Aligned_cols=343 Identities=15% Similarity=0.114 Sum_probs=179.3
Q ss_pred EEEEEcCC---C-ccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHH
Q 012594 6 HVLVIPFP---A-QGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLH 81 (460)
Q Consensus 6 ~Il~~~~~---~-~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 81 (460)
||++++.. . .|+...+..+++.|.+.||+|++++............. ....... ... .. ..
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~-------~~~~~~~-----~~~-~~--~~ 65 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG-------GIVVVRP-----PPL-LR--VR 65 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec-------CcceecC-----Ccc-cc--cc
Confidence 35555532 2 78999999999999999999999998655432221100 0000000 000 00 00
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHH--HHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcC
Q 012594 82 KVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWAL--EVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGL 159 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
. ..........+...++. .++|+|++........ ..+...++|++...........
T Consensus 66 ~--~~~~~~~~~~~~~~~~~-------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------- 123 (374)
T cd03801 66 R--LLLLLLLALRLRRLLRR-------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP------------- 123 (374)
T ss_pred h--hHHHHHHHHHHHHHhhh-------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc-------------
Confidence 0 00001111223344444 8899999887665433 4678889999976544332100
Q ss_pred CCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHH-HHHhhcccccEEEEccccccCccccccC---CC
Q 012594 160 LDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACS-AVAQNLKISNWILCNSFYELDPPACDLI---PN 235 (460)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~le~~~~~~~---p~ 235 (460)
. .. ......... ........++.+++.+....+.-..... .+
T Consensus 124 ----------------~------------~~------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~ 169 (374)
T cd03801 124 ----------------G------------NE------LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEK 169 (374)
T ss_pred ----------------c------------cc------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCc
Confidence 0 00 000001111 1112346778888887665443311111 24
Q ss_pred eeeeCccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcC
Q 012594 236 ILTIGPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRP 310 (460)
Q Consensus 236 ~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~ 310 (460)
+..+.+........ +....... -.....+..+++.+|+.. ..+.+..+++++..+ +.++++. +.
T Consensus 170 ~~~i~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~-G~ 238 (374)
T cd03801 170 ITVIPNGVDTERFR-------PAPRAARR-RLGIPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIV-GD 238 (374)
T ss_pred EEEecCcccccccC-------ccchHHHh-hcCCcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEE-eC
Confidence 55554332221110 00000000 111122336677777754 333445555555433 2333333 32
Q ss_pred CCCccccCCCchhHHh-----hhCCCcEEeeccCchh---hcCCCcccceee----ccChhhhhHhhhcCCceeeccccc
Q 012594 311 DFMNKSHAKLPDGFVE-----RVSDRGKLVEWAPQEK---VLGHPSVACFLS----HCGWNSTLEGLSMGVPFLCWPYFA 378 (460)
Q Consensus 311 ~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~---ll~~~~~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~ 378 (460)
. .....+.+ ....++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+.
T Consensus 239 ~-------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~-- 307 (374)
T cd03801 239 G-------PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV-- 307 (374)
T ss_pred c-------HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC--
Confidence 2 11111111 1357889999998654 7766666 663 3557899999999999999855
Q ss_pred hhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHH-HHHHHhhcCCChHHHHHHHHH
Q 012594 379 DQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQ-MARKSLVEGGSSFRNFESFVS 453 (460)
Q Consensus 379 dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~-~~~~~~~~~g~~~~~~~~~~~ 453 (460)
......+.+. +.|..++ ..+.+++.++|.++++|++.+++..+-+. .+.+ .-+-....+++++
T Consensus 308 --~~~~~~~~~~-~~g~~~~-----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 371 (374)
T cd03801 308 --GGIPEVVEDG-ETGLLVP-----PGDPEALAEAILRLLDDPELRRRLGEAARERVAE----RFSWDRVAARTEE 371 (374)
T ss_pred --CChhHHhcCC-cceEEeC-----CCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 4566666653 7888884 34689999999999998865544433333 3332 3444444444444
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.32 E-value=1.9e-09 Score=103.39 Aligned_cols=83 Identities=19% Similarity=0.299 Sum_probs=61.9
Q ss_pred CCCcEEeeccCchh---hcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
.+++.+.+++|+.+ ++..+++ +|.- |...++.||+++|+|+|+.. ....+..+.+. +.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~-- 328 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPP-- 328 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCC--
Confidence 57889999999765 6767666 6633 34578999999999999874 44556666663 78888853
Q ss_pred CCccCHHHHHHHHHHHhcChHHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGIK 424 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~~ 424 (460)
-+. ++.+++.+++++++.+
T Consensus 329 ---~~~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 329 ---GDE-ALAEALLRLLQDPELR 347 (374)
T ss_pred ---CCH-HHHHHHHHHHhChHHH
Confidence 122 8999999999988643
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.31 E-value=4.4e-09 Score=100.15 Aligned_cols=327 Identities=14% Similarity=0.073 Sum_probs=167.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhH-HhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAK-ITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
||++++....|+......++++|.++||+|++++....... ... .+++++.++...... .....+
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~~~~~~ 66 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA---------LGVKVIPIPLDRRGI-----NPFKDL 66 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc---------CCceEEecccccccc-----ChHhHH
Confidence 57888777889999999999999999999999998765442 222 267777666432111 111111
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCC
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDS 162 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
.. +..+.+.++. .+||+|++..... .+...++..+.|.+...........
T Consensus 67 ~~--------~~~~~~~~~~----~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------- 118 (359)
T cd03808 67 KA--------LLRLYRLLRK----ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF---------------- 118 (359)
T ss_pred HH--------HHHHHHHHHh----cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh----------------
Confidence 11 1223333444 8899999885443 2334445355554443322111000
Q ss_pred CCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCcccccc-C--CCeeee
Q 012594 163 NGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDL-I--PNILTI 239 (460)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~-~--p~~~~v 239 (460)
.. ... . ......... .....+|.+++.+....+.-.... . .....+
T Consensus 119 ------------~~------------~~~----~-~~~~~~~~~--~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T cd03808 119 ------------TS------------GGL----K-RRLYLLLER--LALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLI 167 (359)
T ss_pred ------------cc------------chh----H-HHHHHHHHH--HHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEe
Confidence 00 000 0 000111111 123455777777755433221111 1 122333
Q ss_pred CccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcC-CCHHHHHHHHHHHHhCC--CCEEEEEcCCCCccc
Q 012594 240 GPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAV-LSQEQLEELALGLESLQ--QPFLWVVRPDFMNKS 316 (460)
Q Consensus 240 Gp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~ 316 (460)
.|...+.... ...... ..+++.+++..|+... ...+.+.+.+..+.+.+ .++++..... ..
T Consensus 168 ~~~~~~~~~~------~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~-~~-- 231 (359)
T cd03808 168 PGSGVDLDRF------SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD-EE-- 231 (359)
T ss_pred cCCCCChhhc------Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC-cc--
Confidence 2322221110 000000 1234477888887632 22333333333333322 3444333322 10
Q ss_pred cCCCchh-HHh-hhCCCcEEeeccCc-hhhcCCCcccceeecc----ChhhhhHhhhcCCceeeccccchhhhhHHHHHh
Q 012594 317 HAKLPDG-FVE-RVSDRGKLVEWAPQ-EKVLGHPSVACFLSHC----GWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFD 389 (460)
Q Consensus 317 ~~~~~~~-~~~-~~~~~v~~~~~~p~-~~ll~~~~~~~~I~hg----G~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~ 389 (460)
...... ... ....++.+.++..+ ..++..+++ +|.-+ ..+++.||+++|+|+|+.+.. .....+.+
T Consensus 232 -~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~ 304 (359)
T cd03808 232 -NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVID 304 (359)
T ss_pred -hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhhc
Confidence 000000 011 12467788877544 358877666 66533 367899999999999997544 34455665
Q ss_pred hhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012594 390 AWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMA 434 (460)
Q Consensus 390 ~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 434 (460)
. +.|..++ .-+.+++.++|.+++.|++.+++..+-+.+.
T Consensus 305 ~-~~g~~~~-----~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 305 G-VNGFLVP-----PGDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred C-cceEEEC-----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3 7788874 3478999999999999886555444433333
No 57
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.29 E-value=2.9e-09 Score=103.91 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCCcEEeeccCchh---hcCCCcccceee----ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLS----HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
.+++.+.+++|..+ +|..+++ +|. -|...+++||+++|+|+|+... ......+.+. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC--
Confidence 46799999998754 7877666 653 2334689999999999999744 3455566663 67887742
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGIKANALKMKQM 433 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~ 433 (460)
-+.++++++|.+++++++.++++.+-+.+
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 47899999999999987655444443333
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.28 E-value=1.4e-08 Score=99.25 Aligned_cols=161 Identities=11% Similarity=0.095 Sum_probs=91.9
Q ss_pred cEEEEEcCCCcCCCHHHHHHHHHHHHhCC----CCEEEEEcCCCCccccCCCchhHHhh----hCCCcEEeeccCchh--
Q 012594 273 SVIYVAFGSVAVLSQEQLEELALGLESLQ----QPFLWVVRPDFMNKSHAKLPDGFVER----VSDRGKLVEWAPQEK-- 342 (460)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~-- 342 (460)
..+++..|+.. ..+.+..++++++.+. .+++ +++.+. ..+.+.+. .-+|+.+.+|+|+.+
T Consensus 229 ~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g~-------~~~~l~~~~~~~~l~~v~f~G~~~~~~~~ 298 (412)
T PRK10307 229 KKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQGG-------GKARLEKMAQCRGLPNVHFLPLQPYDRLP 298 (412)
T ss_pred CEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCCh-------hHHHHHHHHHHcCCCceEEeCCCCHHHHH
Confidence 36666778754 3445555666665432 2333 344331 11222111 124799999998764
Q ss_pred -hcCCCcccceeeccCh------hhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHH
Q 012594 343 -VLGHPSVACFLSHCGW------NSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVK 415 (460)
Q Consensus 343 -ll~~~~~~~~I~hgG~------~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~ 415 (460)
++..+++-++.+..+. +.+.|++++|+|+|+....... ....+ + +.|..++ .-+.++++++|.
T Consensus 299 ~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~-----~~d~~~la~~i~ 368 (412)
T PRK10307 299 ALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVE-----PESVEALVAAIA 368 (412)
T ss_pred HHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeC-----CCCHHHHHHHHH
Confidence 6777777444444332 3468999999999998654311 12222 2 6788874 346899999999
Q ss_pred HHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 416 ALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 416 ~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
++++|++.+++..+-+ ++..++.-+....++.+++.+.
T Consensus 369 ~l~~~~~~~~~~~~~a---~~~~~~~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 369 ALARQALLRPKLGTVA---REYAERTLDKENVLRQFIADIR 406 (412)
T ss_pred HHHhCHHHHHHHHHHH---HHHHHHHcCHHHHHHHHHHHHH
Confidence 9998875444333333 2222223444555555555443
No 59
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.26 E-value=5.2e-09 Score=108.66 Aligned_cols=380 Identities=11% Similarity=0.084 Sum_probs=197.5
Q ss_pred CCCEEEEEcCC---------------CccChHHHHHHHHHHHhCC--CEEEEEeCccchhHHhhccC-------------
Q 012594 3 REPHVLVIPFP---------------AQGHAGPLMKLSTKIAEHG--IKVTFVSTEHMHAKITASMP------------- 52 (460)
Q Consensus 3 ~~~~Il~~~~~---------------~~gH~~p~~~La~~L~~rG--h~V~~~~~~~~~~~~~~~~~------------- 52 (460)
+++.|++++.. +.|+..=.+.||++|+++| |+|.++|.......+...+.
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 45677777643 2345556789999999998 89999997654322211110
Q ss_pred --ccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHH----HHHHhhcCCCCCccEEEeCCCcc--hHH
Q 012594 53 --QKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNL----IEKVNKSNDCEKISCVIADLTVG--WAL 124 (460)
Q Consensus 53 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~l~~~~~~~~~D~vv~D~~~~--~~~ 124 (460)
......+|+.++.+|-+..........++.++..|.+.+...+..+ .+.+....+ ..||+|-+..... .+.
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~-~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHP-VWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccC-CCCCEEEECcchHHHHHH
Confidence 0122345888888886655322255566777777766655444332 222211111 3599999886444 667
Q ss_pred HHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHH
Q 012594 125 EVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGAC 204 (460)
Q Consensus 125 ~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
.+++.+|||+|...++......... ...+..+ . . ... ..+ .+...+
T Consensus 327 ~L~~~lgVP~V~T~HSLgr~K~~~l-----l~~g~~~----------~------~-----~~~-~~y-------~~~~Ri 372 (1050)
T TIGR02468 327 LLSGALNVPMVLTGHSLGRDKLEQL-----LKQGRMS----------K------E-----EIN-STY-------KIMRRI 372 (1050)
T ss_pred HHHHhhCCCEEEECccchhhhhhhh-----ccccccc----------c------c-----ccc-ccc-------chHHHH
Confidence 8889999999987776542211000 0000000 0 0 000 000 000111
Q ss_pred HHHHhhcccccEEEEccccccCcccc------c-------------------cCCCeeeeCccCCC----CCccC-cc--
Q 012594 205 SAVAQNLKISNWILCNSFYELDPPAC------D-------------------LIPNILTIGPLLGR----DHLEH-SA-- 252 (460)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~le~~~~------~-------------------~~p~~~~vGp~~~~----~~~~~-~~-- 252 (460)
......+..++.++..|..+.+--.. + ..+++..|.|=... +.... +.
T Consensus 373 ~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~ 452 (1050)
T TIGR02468 373 EAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGET 452 (1050)
T ss_pred HHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchh
Confidence 11112356778888888776541000 0 12233333322110 00000 00
Q ss_pred --------CCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCcccc--
Q 012594 253 --------VNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQ-----QPFLWVVRPDFMNKSH-- 317 (460)
Q Consensus 253 --------~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~-- 317 (460)
....+...++..|+.. +++ ++++..|... +.+.+..+++|+..+. ..+.++++.....+..
T Consensus 453 ~~~~~~~~~~~~~~~~~l~r~~~~-pdk-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~ 528 (1050)
T TIGR02468 453 EGNEEHPAKPDPPIWSEIMRFFTN-PRK-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSS 528 (1050)
T ss_pred cccccccccccchhhHHHHhhccc-CCC-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhc
Confidence 0000112245566644 333 4566667643 3445666677765432 2444444432110000
Q ss_pred --CCCchhHH---hh--hCCCcEEeeccCchh---hcCCCc--ccceee----ccChhhhhHhhhcCCceeeccccchhh
Q 012594 318 --AKLPDGFV---ER--VSDRGKLVEWAPQEK---VLGHPS--VACFLS----HCGWNSTLEGLSMGVPFLCWPYFADQY 381 (460)
Q Consensus 318 --~~~~~~~~---~~--~~~~v~~~~~~p~~~---ll~~~~--~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~dQ~ 381 (460)
......+. ++ ..++|.+.+++++.+ ++..++ .++||. =|=..+++||+++|+|+|+....
T Consensus 529 ~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG---- 604 (1050)
T TIGR02468 529 GSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG---- 604 (1050)
T ss_pred cchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----
Confidence 00001111 11 246788889988765 454432 123665 23356889999999999998543
Q ss_pred hhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012594 382 QNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMK 431 (460)
Q Consensus 382 ~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~ 431 (460)
.....+... .-|..++. -+.+.|+++|.++++|+..+++..+-+
T Consensus 605 G~~EII~~g-~nGlLVdP-----~D~eaLA~AL~~LL~Dpelr~~m~~~g 648 (1050)
T TIGR02468 605 GPVDIHRVL-DNGLLVDP-----HDQQAIADALLKLVADKQLWAECRQNG 648 (1050)
T ss_pred CcHHHhccC-CcEEEECC-----CCHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 344455542 56888843 478999999999999986555544443
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.24 E-value=7.2e-09 Score=99.44 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=72.9
Q ss_pred CCCcEEeeccC-ch---hhcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecC
Q 012594 329 SDRGKLVEWAP-QE---KVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPD 400 (460)
Q Consensus 329 ~~~v~~~~~~p-~~---~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~ 400 (460)
..++.+.+|++ +. .++..+++ +|.- |...++.||+++|+|+|+... ......+.+. +.|..++
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~-- 313 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAK-- 313 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeC--
Confidence 46788889998 43 36766666 7763 446899999999999998743 3344455552 5777773
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 401 ENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 401 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
..+.+.+++++.++++|++.+++..+-+.... .+.-+.....+++++-+.
T Consensus 314 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 314 ---PGDPEDLAEGIEWLLADPDEREELGEAARELA---ENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHh
Confidence 34789999999999988864433333222222 123454555555555443
No 61
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.23 E-value=1.2e-09 Score=104.91 Aligned_cols=137 Identities=16% Similarity=0.169 Sum_probs=83.9
Q ss_pred CcEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCccccCCCchhHHhh--hCCCcEEeeccCch---
Q 012594 272 GSVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRPDFMNKSHAKLPDGFVER--VSDRGKLVEWAPQE--- 341 (460)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~--- 341 (460)
++.++++.+-.... .+.+..+++++..+ +.++++....+. .....+.+. ..+++++.+.+++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP------VVREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh------HHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 34677765432111 13466677777543 345555433221 011111111 23678888777654
Q ss_pred hhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 342 KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 342 ~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
.++.++++ +|+-.|.. +.||+++|+|+|.++...++.. +.+. |.+..+. .+.+.|.+++.++++|+
T Consensus 270 ~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 270 NLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDP 335 (365)
T ss_pred HHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhCh
Confidence 46656555 89877654 7999999999999876555442 2333 7776663 26899999999999988
Q ss_pred HHHHHHHH
Q 012594 422 GIKANALK 429 (460)
Q Consensus 422 ~~~~~a~~ 429 (460)
+.+++...
T Consensus 336 ~~~~~~~~ 343 (365)
T TIGR00236 336 DEYKKMSN 343 (365)
T ss_pred HHHHHhhh
Confidence 76665543
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.21 E-value=1.3e-08 Score=98.81 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCCcEEeeccCchh---hcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
.++|.+.+++|..+ +|..+++ ++.. |-..++.||+++|+|+|+.-. ......+.+. +.|..+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeC---
Confidence 47899999999864 6766666 5532 223578999999999999843 3344556653 6777763
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGIKAN 426 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~~~~ 426 (460)
. +.++++++|.+++++++.+++
T Consensus 349 --~-~~~~~a~~i~~l~~~~~~~~~ 370 (392)
T cd03805 349 --P-TPEEFAEAMLKLANDPDLADR 370 (392)
T ss_pred --C-CHHHHHHHHHHHHhChHHHHH
Confidence 2 689999999999998864433
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.21 E-value=2.5e-08 Score=95.43 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=62.6
Q ss_pred CCCcEEeeccCchh---hcCCCccccee----eccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFL----SHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I----~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
.+++.+.+++++.+ ++..+++ +| +-|..+++.||+++|+|+|+.+.. .....+.+. +.|..+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~---- 326 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLV---- 326 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEE----
Confidence 56889999998754 6766665 55 335568899999999999987544 345566663 667777
Q ss_pred CCccCHHHHHHHHHHHhcChHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGI 423 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~ 423 (460)
..-+.+++.++|.++++++..
T Consensus 327 -~~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 327 -PPGDPEALAEAILRLLADPWL 347 (377)
T ss_pred -CCCCHHHHHHHHHHHhcCcHH
Confidence 345799999999999998873
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.20 E-value=8e-09 Score=98.76 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=86.9
Q ss_pred cEEEEEcCCCcCCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCccccCCCchhH-HhhhCCCcEEeeccCchh---hcCCC
Q 012594 273 SVIYVAFGSVAVLSQEQLEELALGLESLQ-QPFLWVVRPDFMNKSHAKLPDGF-VERVSDRGKLVEWAPQEK---VLGHP 347 (460)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~---ll~~~ 347 (460)
..+++..|+.. ..+.+..++++++++. .++++...+. ....+..-. ......||.+.+|+|+.+ ++..+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~a 264 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAAC 264 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhC
Confidence 36777778753 3345666777777666 4444443222 001111101 011357899999999754 77666
Q ss_pred cccceee---ccC-hhhhhHhhhcCCceeeccccchhhhhHHHHHh-hhcceeEeecCCCCccCHHHHHHHHHHHhcChH
Q 012594 348 SVACFLS---HCG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFD-AWKIGLRFFPDENGIITRQEIQRQVKALLNDGG 422 (460)
Q Consensus 348 ~~~~~I~---hgG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~-~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 422 (460)
++-++.+ +.| ..++.||+++|+|+|+........ .+.+ . +.|..++ .-+.++++++|.++++|++
T Consensus 265 d~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~-----~~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 265 DVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVP-----PGDPAALAEAIRRLLEDPE 334 (357)
T ss_pred CEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeC-----CCCHHHHHHHHHHHHHCHH
Confidence 6633323 233 457999999999999985554443 3332 3 7788774 3479999999999999986
Q ss_pred HHHHHHH
Q 012594 423 IKANALK 429 (460)
Q Consensus 423 ~~~~a~~ 429 (460)
.+++..+
T Consensus 335 ~~~~~~~ 341 (357)
T cd03795 335 LRERLGE 341 (357)
T ss_pred HHHHHHH
Confidence 5443333
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.16 E-value=4.9e-08 Score=92.43 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCCcEEeeccCc-hhhcCCCcccceeecc----ChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhc-ceeEeecCCC
Q 012594 329 SDRGKLVEWAPQ-EKVLGHPSVACFLSHC----GWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK-IGLRFFPDEN 402 (460)
Q Consensus 329 ~~~v~~~~~~p~-~~ll~~~~~~~~I~hg----G~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg-~g~~~~~~~~ 402 (460)
..++.+.++... ..++..+++ +|.-. ..+++.||+++|+|+|+.+....+. .+.+. + .|..++
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~---- 302 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVP---- 302 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeC----
Confidence 356777776332 357877666 66543 2578999999999999876544332 23332 5 788874
Q ss_pred CccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012594 403 GIITRQEIQRQVKALLNDGGIKANALKMKQMARK 436 (460)
Q Consensus 403 ~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 436 (460)
..+.++++++|.++++|++.+++..+-+..+.+
T Consensus 303 -~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~ 335 (348)
T cd03820 303 -NGDVEALAEALLRLMEDEELRKRMGANARESAE 335 (348)
T ss_pred -CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 346899999999999999776666655544443
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.14 E-value=4.3e-08 Score=90.77 Aligned_cols=298 Identities=16% Similarity=0.087 Sum_probs=160.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc--hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM--HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (460)
|||.|--. ...|+.-+..+.++|.++||+|.+.+.+.. .+.+... |+++..+...-. +...
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y---------g~~y~~iG~~g~-------~~~~ 63 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY---------GIDYIVIGKHGD-------SLYG 63 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc---------CCCeEEEcCCCC-------CHHH
Confidence 35665543 334999999999999999999999887653 4445544 888888764221 1111
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCC
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDS 162 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
.+... .....++++.++. .+||++|+- ....+..+|..+|+|+|.+.-..........
T Consensus 64 Kl~~~----~~R~~~l~~~~~~----~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~L------------- 121 (335)
T PF04007_consen 64 KLLES----IERQYKLLKLIKK----FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRL------------- 121 (335)
T ss_pred HHHHH----HHHHHHHHHHHHh----hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcccee-------------
Confidence 11111 1234455555555 899999975 3567888999999999998876443110000
Q ss_pred CCCCCCCCcccccCCCCCCccccCCCCCCCCCc-chhHHHHHHHHHHhhcccc-cEEE-EccccccCccccccCCCeeee
Q 012594 163 NGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPH-MQKLFFGACSAVAQNLKIS-NWIL-CNSFYELDPPACDLIPNILTI 239 (460)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l-~~~~~~le~~~~~~~p~~~~v 239 (460)
.+| +. +.+..+. ........ ... +.+. +++..++-+ +
T Consensus 122 -----------t~P---------la-~~i~~P~~~~~~~~~~--------~G~~~~i~~y~G~~E~ay-----------l 161 (335)
T PF04007_consen 122 -----------TLP---------LA-DVIITPEAIPKEFLKR--------FGAKNQIRTYNGYKELAY-----------L 161 (335)
T ss_pred -----------ehh---------cC-CeeECCcccCHHHHHh--------cCCcCCEEEECCeeeEEe-----------e
Confidence 000 00 0011100 00000000 011 1122 333333221 1
Q ss_pred CccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCc----CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCcc
Q 012594 240 GPLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVA----VLSQEQLEELALGLESLQQPFLWVVRPDFMNK 315 (460)
Q Consensus 240 Gp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 315 (460)
-|+ .++.+..+-+.. ++.+.|++-+.+.. ......+..+++.+++.+..+| .+....
T Consensus 162 ~~F--------------~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV-~ipr~~--- 222 (335)
T PF04007_consen 162 HPF--------------KPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVV-IIPRYE--- 222 (335)
T ss_pred cCC--------------CCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEE-EecCCc---
Confidence 111 223333333432 24567887776531 1234557778888888876644 333221
Q ss_pred ccCCCchhHHhhhCCCcEEe-eccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcce
Q 012594 316 SHAKLPDGFVERVSDRGKLV-EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIG 394 (460)
Q Consensus 316 ~~~~~~~~~~~~~~~~v~~~-~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g 394 (460)
..++-+. .-++.+. .-++..++|.++++ ||+-|| ....||...|+|.|.+ +..+-...-+.+.++ |.
T Consensus 223 ---~~~~~~~---~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl- 290 (335)
T PF04007_consen 223 ---DQRELFE---KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL- 290 (335)
T ss_pred ---chhhHHh---ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC-
Confidence 1111111 1113333 44555579988776 998877 6779999999999985 222222333455553 54
Q ss_pred eEeecCCCCccCHHHHHHHHHHHh
Q 012594 395 LRFFPDENGIITRQEIQRQVKALL 418 (460)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~i~~~l 418 (460)
.. ...+.+++.+.+.+.+
T Consensus 291 -l~-----~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 291 -LY-----HSTDPDEIVEYVRKNL 308 (335)
T ss_pred -eE-----ecCCHHHHHHHHHHhh
Confidence 43 3346777777665544
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.14 E-value=3.9e-08 Score=96.48 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=64.3
Q ss_pred cEEeeccCc-hhhcCCCcccceeec-----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCcc
Q 012594 332 GKLVEWAPQ-EKVLGHPSVACFLSH-----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGII 405 (460)
Q Consensus 332 v~~~~~~p~-~~ll~~~~~~~~I~h-----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~ 405 (460)
+.+.+.... ..+++.+++ ++.. ||..+++||+++|+|+|+.|...++......+.+. |.++.. -
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~ 373 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------E 373 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------C
Confidence 444443332 346766665 4331 44556999999999999999988888888877663 766654 2
Q ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012594 406 TRQEIQRQVKALLNDGGIKANALKMKQMA 434 (460)
Q Consensus 406 ~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 434 (460)
+.++|+++|.++++|++.+++..+-+.+.
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 68999999999999887655544444433
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.13 E-value=5.4e-08 Score=93.25 Aligned_cols=92 Identities=13% Similarity=0.004 Sum_probs=63.7
Q ss_pred CCCcEEeeccCchh---hcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
.+++.+.+|+++.+ ++..+++ +|.- |-..++.||+++|+|+|+.+. ......+.. +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeCC--
Confidence 57889999999654 5767666 5432 235789999999999999753 344455543 67777642
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGIKANALKMKQMA 434 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 434 (460)
+.+++.++|.+++++++.+++..+-+.+.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34999999999999875544444444333
No 69
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.13 E-value=3.7e-08 Score=94.64 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=65.2
Q ss_pred CCCcEEeeccCchh---hcCCCcccceee----------ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhccee
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLS----------HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGL 395 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~----------hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~ 395 (460)
.+++.+.+++|+.+ ++..+++ +|. -|..+++.||+++|+|+|+.+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 57788999998764 5766666 553 23467999999999999987654 356666664 7888
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcChHHHHHH
Q 012594 396 RFFPDENGIITRQEIQRQVKALLNDGGIKANA 427 (460)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a 427 (460)
.++ .-+.++++++|.++++|++.+++.
T Consensus 317 ~~~-----~~d~~~l~~~i~~l~~~~~~~~~~ 343 (367)
T cd05844 317 LVP-----EGDVAALAAALGRLLADPDLRARM 343 (367)
T ss_pred EEC-----CCCHHHHHHHHHHHHcCHHHHHHH
Confidence 884 347899999999999988644443
No 70
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.12 E-value=9.1e-10 Score=105.73 Aligned_cols=139 Identities=18% Similarity=0.115 Sum_probs=86.5
Q ss_pred CCcEEEEEcCCCcCC-CHHHHHHHHHHHHhCCCC-EEEEEcCCCCccccCCCchhHHhhh---CCCcEEeeccCch---h
Q 012594 271 VGSVIYVAFGSVAVL-SQEQLEELALGLESLQQP-FLWVVRPDFMNKSHAKLPDGFVERV---SDRGKLVEWAPQE---K 342 (460)
Q Consensus 271 ~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~---~ 342 (460)
+++.+++++|..... ..+.+..++++++.+..+ ++++..++... ...+.+ ...+. .+++.+.++.++. .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~--~~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 273 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT--RPRIRE-AGLEFLGHHPNVLLISPLGYLYFLL 273 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh--HHHHHH-HHHhhccCCCCEEEECCcCHHHHHH
Confidence 355788888875432 456678888888765432 44444332110 011111 11111 3678887766554 4
Q ss_pred hcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChH
Q 012594 343 VLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGG 422 (460)
Q Consensus 343 ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 422 (460)
++..+++ ||+-+| |.+.||+++|+|+|+++.. |. +..+.+. |++..+. . +.+.|.++|.++++++.
T Consensus 274 l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~-----~-~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 274 LLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG-----T-DPEAILAAIEKLLSDEF 339 (363)
T ss_pred HHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC-----C-CHHHHHHHHHHHhcCch
Confidence 6756665 999998 7888999999999998643 22 3334443 7776652 1 58999999999998875
Q ss_pred HHHH
Q 012594 423 IKAN 426 (460)
Q Consensus 423 ~~~~ 426 (460)
.+++
T Consensus 340 ~~~~ 343 (363)
T cd03786 340 AYSL 343 (363)
T ss_pred hhhc
Confidence 5444
No 71
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.11 E-value=1.9e-07 Score=91.81 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=61.4
Q ss_pred CCCcEEeeccCchh---hcCCC--cccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeec
Q 012594 329 SDRGKLVEWAPQEK---VLGHP--SVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFP 399 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~--~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~ 399 (460)
.++|.+.+++++.+ ++..+ ++++||.- |-..+++||+++|+|+|+... ......+.+. ..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCC
Confidence 56788888888765 35433 12347653 335689999999999999844 4455666553 57888743
Q ss_pred CCCCccCHHHHHHHHHHHhcChHHH
Q 012594 400 DENGIITRQEIQRQVKALLNDGGIK 424 (460)
Q Consensus 400 ~~~~~~~~~~l~~~i~~~l~~~~~~ 424 (460)
-+.++++++|.++++|++.+
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~ 410 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQW 410 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHH
Confidence 47899999999999988644
No 72
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.09 E-value=1.2e-07 Score=92.19 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=54.9
Q ss_pred CCCcEEeeccCchh---hcCCCcccceee---ccCh-hhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLS---HCGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~---hgG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
.+++.+.+|+|+.+ +++.+++ +|. +-|. .++.||+++|+|+|+.+... ....+.+ |-+...
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~---- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLA---- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceeec----
Confidence 46788999998654 7766666 553 2233 49999999999999986542 3344443 444333
Q ss_pred CCccCHHHHHHHHHHHhcCh
Q 012594 402 NGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~ 421 (460)
. .+.+++++++.+++++.
T Consensus 317 -~-~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 317 -E-PDVESIVRKLEEAISIL 334 (398)
T ss_pred -C-CCHHHHHHHHHHHHhCh
Confidence 2 26899999999999764
No 73
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.08 E-value=6.9e-07 Score=91.18 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=58.7
Q ss_pred CCCcEEeecc-Cch---hhcCC-Cc-ccceee----ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEee
Q 012594 329 SDRGKLVEWA-PQE---KVLGH-PS-VACFLS----HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFF 398 (460)
Q Consensus 329 ~~~v~~~~~~-p~~---~ll~~-~~-~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~ 398 (460)
.++|.+.++. +.. +++.+ ++ .++||. =+-.-+++||+++|+|+|+. +....+..|.+. .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEeC
Confidence 4678887764 332 34432 21 123553 33346889999999999997 445566777763 6788885
Q ss_pred cCCCCccCHHHHHHHHHHHh----cChHHHHHHH
Q 012594 399 PDENGIITRQEIQRQVKALL----NDGGIKANAL 428 (460)
Q Consensus 399 ~~~~~~~~~~~l~~~i~~~l----~~~~~~~~a~ 428 (460)
. .+.+.++++|.+++ .|++.+++..
T Consensus 693 p-----~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 693 P-----YHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3 47888999998876 5775554433
No 74
>PLN02275 transferase, transferring glycosyl groups
Probab=99.04 E-value=1e-07 Score=91.57 Aligned_cols=126 Identities=9% Similarity=-0.072 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCC-EEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGI-KVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
|+.+-|+.++..|-.|.--.+..++..|+++|| +|++++.+......+. ....++.++.++. ..... ....
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~------~~~~~v~v~r~~~-~~~~~-~~~~ 72 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL------LNHPSIHIHLMVQ-PRLLQ-RLPR 72 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH------hcCCcEEEEECCC-ccccc-cccc
Confidence 777778888888999999999999999999986 7999986443211111 1224788888875 21111 1111
Q ss_pred HHH---HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCC-Ccc----hHHHHHHHhCCceEEEccc
Q 012594 80 LHK---VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADL-TVG----WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 80 ~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~-~~~----~~~~~A~~lgiP~v~~~~~ 140 (460)
... ++......+...+.-+. .+. .+||+|++.. ... .+..+++..++|+|...+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 73 VLYALALLLKVAIQFLMLLWFLC--VKI----PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--hhC----CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 222 11111111111111111 123 8899999853 222 2334566779999976543
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.04 E-value=3e-07 Score=87.83 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred CCCcEEeeccCc-hhhcCCCcccceee--cc-ChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCc
Q 012594 329 SDRGKLVEWAPQ-EKVLGHPSVACFLS--HC-GWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGI 404 (460)
Q Consensus 329 ~~~v~~~~~~p~-~~ll~~~~~~~~I~--hg-G~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~ 404 (460)
.++|.+.+|.+. ..+|..+++-++-+ +- ..++++||+++|+|+|+... ......+.+. +.|..++ .
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~-----~ 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVP-----P 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeC-----C
Confidence 467888888543 35787777733333 12 34699999999999998743 3455566653 5788884 3
Q ss_pred cCHHHHHHHHHHHhc-ChHHH
Q 012594 405 ITRQEIQRQVKALLN-DGGIK 424 (460)
Q Consensus 405 ~~~~~l~~~i~~~l~-~~~~~ 424 (460)
-+.+.++++|..++. +++.+
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~ 335 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGR 335 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHH
Confidence 488999999976554 55433
No 76
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.02 E-value=1.4e-07 Score=89.38 Aligned_cols=130 Identities=9% Similarity=0.011 Sum_probs=80.2
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhh--hCCCcEEeeccCchh---hcCCCc
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVER--VSDRGKLVEWAPQEK---VLGHPS 348 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~---ll~~~~ 348 (460)
.+.+..|... ..+....++++++..+.++++...+.. ........... ..+++.+.+++++.+ +++.++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD----PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC----HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 3445567652 334456677888878777766544321 01111111111 257899999999864 576666
Q ss_pred ccceee--ccC-hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLS--HCG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~--hgG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
+-++-+ +-| ..++.||+++|+|+|+... ......+.+. ..|..++ . .++++++|.+++..+
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeC----C---HHHHHHHHHHHhccH
Confidence 633323 234 4589999999999998844 4455555542 3677773 2 899999999987543
No 77
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.02 E-value=1.5e-07 Score=89.17 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCccccCCCchhHHhh--hCCCcEEeeccCch-hh
Q 012594 272 GSVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRPDFMNKSHAKLPDGFVER--VSDRGKLVEWAPQE-KV 343 (460)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~-~l 343 (460)
++.+++..|+.. ..+....++++++.+ +.++++...+. . ...+ ....++ ..+++.+.++.+.. .+
T Consensus 188 ~~~~i~~~g~~~--~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~-~---~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (353)
T cd03811 188 DGPVILAVGRLS--PQKGFDTLIRAFALLRKEGPDARLVILGDGP-L---REEL-EALAKELGLADRVHFLGFQSNPYPY 260 (353)
T ss_pred CceEEEEEecch--hhcChHHHHHHHHHhhhcCCCceEEEEcCCc-c---HHHH-HHHHHhcCCCccEEEecccCCHHHH
Confidence 347777788754 233344455555433 23444433211 0 0000 111111 24678888887654 57
Q ss_pred cCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHH---HHHHHH
Q 012594 344 LGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEI---QRQVKA 416 (460)
Q Consensus 344 l~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l---~~~i~~ 416 (460)
+..+++ +|.- |..+++.||+++|+|+|+.... .....+.+. +.|...+. -+.+.+ .+.+.+
T Consensus 261 ~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~~~~~~~~i~~ 328 (353)
T cd03811 261 LKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-----GDEAALAAAALALLD 328 (353)
T ss_pred HHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-----CCHHHHHHHHHHHHh
Confidence 877666 6532 4467899999999999987443 566677774 78888843 466666 566666
Q ss_pred HhcChHHHHHHHH
Q 012594 417 LLNDGGIKANALK 429 (460)
Q Consensus 417 ~l~~~~~~~~a~~ 429 (460)
++.+++.++++..
T Consensus 329 ~~~~~~~~~~~~~ 341 (353)
T cd03811 329 LLLDPELRERLAA 341 (353)
T ss_pred ccCChHHHHHHHH
Confidence 6666654444433
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.02 E-value=9.8e-08 Score=91.42 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=80.3
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhCCCCE-EEEEcCCCCccccCCCchhHHhh--hCCCcEEeeccCc--hh---hcC
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESLQQPF-LWVVRPDFMNKSHAKLPDGFVER--VSDRGKLVEWAPQ--EK---VLG 345 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~--~~---ll~ 345 (460)
.+++..|.......+.+..+++++.+....+ ++.++.+. ....+ ....+. .+++|.+.+|+++ .. .++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~---~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~ 256 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS---DFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKIK 256 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc---cHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHHHh
Confidence 5666777654323445666777776553333 23333221 00111 111111 2578999999854 22 343
Q ss_pred CCcccceee--c--cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 346 HPSVACFLS--H--CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 346 ~~~~~~~I~--h--gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
.+++ +|. + |-..++.||+++|+|+|+.-. .......+.+. ..|..++ .-+.++++++|.++++|+
T Consensus 257 ~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~-----~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 257 NVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYT-----PGNIDEFVGKLNKVISGE 325 (359)
T ss_pred cCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEEC-----CCCHHHHHHHHHHHHhCc
Confidence 3444 554 2 336799999999999998741 22333455553 6788874 348999999999999988
Q ss_pred H
Q 012594 422 G 422 (460)
Q Consensus 422 ~ 422 (460)
+
T Consensus 326 ~ 326 (359)
T PRK09922 326 V 326 (359)
T ss_pred c
Confidence 6
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.01 E-value=3.3e-07 Score=87.68 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=60.2
Q ss_pred CCCcEEeeccCc-hhhcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 329 SDRGKLVEWAPQ-EKVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 329 ~~~v~~~~~~p~-~~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
.+++.+.++..+ .+++..+++ +|.- |-..+++||+++|+|+|+..... ....+.. +.|....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~----- 314 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL----- 314 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-----
Confidence 467888887444 357877666 5532 45688999999999999875443 3444443 5555552
Q ss_pred ccCHHHHHHHHHHHhcChHHHHHH
Q 012594 404 IITRQEIQRQVKALLNDGGIKANA 427 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~~~~~~~~a 427 (460)
.-+.++++++|.++++|++.+++.
T Consensus 315 ~~~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 315 DESPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred CCCHHHHHHHHHHHHhCcchhhhh
Confidence 235799999999999998765544
No 80
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.99 E-value=7.9e-07 Score=84.90 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=62.0
Q ss_pred CCCcEEeeccCchh---hcCCCcccceee----------ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhccee
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLS----------HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGL 395 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~----------hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~ 395 (460)
++++.+.+++|+.+ ++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 57899999998654 6666666 555 34467999999999999987543 233455542 4888
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcChHHH
Q 012594 396 RFFPDENGIITRQEIQRQVKALLNDGGIK 424 (460)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 424 (460)
.+. .-+.+++.++|.++++|+..+
T Consensus 308 ~~~-----~~~~~~l~~~i~~~~~~~~~~ 331 (355)
T cd03799 308 LVP-----PGDPEALADAIERLLDDPELR 331 (355)
T ss_pred EeC-----CCCHHHHHHHHHHHHhCHHHH
Confidence 874 337899999999999988643
No 81
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.97 E-value=4.7e-07 Score=86.66 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCcEEe-eccCch---hhcCCCcccceee----c--cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEee
Q 012594 329 SDRGKLV-EWAPQE---KVLGHPSVACFLS----H--CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFF 398 (460)
Q Consensus 329 ~~~v~~~-~~~p~~---~ll~~~~~~~~I~----h--gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~ 398 (460)
.+++.+. +|+|+. .++..+++ +|. . |..++++||+++|+|+|+.+... ...+... +.|..+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 5678877 458865 47766666 652 2 44578999999999999987654 2334453 7788874
Q ss_pred cCCCCccCHHHHHHHHHHHhcChHHHHHHH
Q 012594 399 PDENGIITRQEIQRQVKALLNDGGIKANAL 428 (460)
Q Consensus 399 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 428 (460)
. -+.++++++|.++++|++.+++..
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~~~~ 342 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQALR 342 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHHHHH
Confidence 3 468999999999999875444333
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.96 E-value=6.3e-07 Score=85.90 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=83.1
Q ss_pred EEEcCCCcCCCHHHHHHHHHHHHhCC--CCEEEEEcCCCCccccCCCchhHH--hhhCCCcEEeeccCchh---hcCCCc
Q 012594 276 YVAFGSVAVLSQEQLEELALGLESLQ--QPFLWVVRPDFMNKSHAKLPDGFV--ERVSDRGKLVEWAPQEK---VLGHPS 348 (460)
Q Consensus 276 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~---ll~~~~ 348 (460)
++..|+.. ..+.+..++++++++. .+++++...... ......+. ....++|.+.+++++.+ ++..++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNADHN----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCCCc----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 45567754 3344556777776554 344443332110 11111111 12357899999999875 554445
Q ss_pred ccceeeccC-----hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHH
Q 012594 349 VACFLSHCG-----WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGI 423 (460)
Q Consensus 349 ~~~~I~hgG-----~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 423 (460)
+ ++.++- .+++.||+++|+|+|+..... +...+. ..|..+.. .+.++++|.++++|++.
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~---~~g~~~~~-------~~~l~~~i~~l~~~~~~ 333 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLG---DKAIYFKV-------GDDLASLLEELEADPEE 333 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeec---CCeeEecC-------chHHHHHHHHHHhCHHH
Confidence 4 554332 257899999999999885442 222222 23444422 11299999999998754
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012594 424 KANALKMKQMARKSLVEGGSSFRNFESFVSQ 454 (460)
Q Consensus 424 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 454 (460)
+++. ++..++...+.-+-....+++++.
T Consensus 334 ~~~~---~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 334 VSAM---AKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4433 333333222234545555555543
No 83
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.93 E-value=5.9e-07 Score=86.55 Aligned_cols=111 Identities=15% Similarity=0.066 Sum_probs=69.9
Q ss_pred CCCcEEeecc--Cch---hhcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeec
Q 012594 329 SDRGKLVEWA--PQE---KVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFP 399 (460)
Q Consensus 329 ~~~v~~~~~~--p~~---~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~ 399 (460)
.+++.+.++. +.. .+++.+++ |+.- |-..++.||+++|+|+|+.... .....+... ..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 4678888776 443 36766666 7643 2245899999999999997543 334455553 5676652
Q ss_pred CCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 400 DENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 400 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
+.+.++++|.++++|++.++...+-+.+.. .+.-+-...++++++-+.
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREHV---RENFLITRHLKDYLYLIS 370 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHH
Confidence 356788899999988876554444333322 124555566666665554
No 84
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.90 E-value=5e-06 Score=79.22 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=55.9
Q ss_pred CCCcEEeeccCc-hhhcCCCcccceeecc----ChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 329 SDRGKLVEWAPQ-EKVLGHPSVACFLSHC----GWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 329 ~~~v~~~~~~p~-~~ll~~~~~~~~I~hg----G~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
..++.+.+.... ..++..+++ +|..+ ..+++.||+++|+|+|+.. ...+...+.+ .|..++
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~----- 315 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVP----- 315 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeC-----
Confidence 356666665443 358877666 77543 3579999999999999864 4445555543 455663
Q ss_pred ccCHHHHHHHHHHHhcChHH
Q 012594 404 IITRQEIQRQVKALLNDGGI 423 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~~~~~ 423 (460)
.-+.+++.++|.+++++++.
T Consensus 316 ~~~~~~l~~~i~~l~~~~~~ 335 (365)
T cd03807 316 PGDPEALAEAIEALLADPAL 335 (365)
T ss_pred CCCHHHHHHHHHHHHhChHH
Confidence 23689999999999988743
No 85
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.89 E-value=1.5e-06 Score=84.33 Aligned_cols=167 Identities=14% Similarity=0.116 Sum_probs=91.2
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCccccCCCchhHHhh---h---CCCcEE-eeccCchh--
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESL--QQPFLWVVRPDFMNKSHAKLPDGFVER---V---SDRGKL-VEWAPQEK-- 342 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~-~~~~p~~~-- 342 (460)
++++..|+.. ..+.+..++++++.+ +.++++..++... ....+.+.+. . ..++.+ .+++++.+
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 275 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDT----PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELV 275 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCc----HHHHHHHHHHHHHhccccCceEEecCCCCHHHHH
Confidence 5666677753 335566677777655 3455544433211 0111111111 1 134554 46777653
Q ss_pred -hcCCCcccceee----ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC-CCccCHHHHHHHHHH
Q 012594 343 -VLGHPSVACFLS----HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE-NGIITRQEIQRQVKA 416 (460)
Q Consensus 343 -ll~~~~~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~-~~~~~~~~l~~~i~~ 416 (460)
++..+++ +|. -|...+++||+++|+|+|+... ....+.+.+. +.|..++... +..-..+.+.++|.+
T Consensus 276 ~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 276 ELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHH
Confidence 6777776 654 2334677999999999999754 4466666663 6788885410 001112889999999
Q ss_pred HhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 417 LLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 417 ~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
+++|++.+++..+-+.+ ...+.-+.....+.+++.++
T Consensus 349 l~~~~~~~~~~~~~a~~---~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 349 LLADPELAKKMGIAGRK---RAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHhCHHHHHHHHHHHHH---HHHHhCCHHHHHHHHHHHHH
Confidence 99887644333322222 11113344445555555443
No 86
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.87 E-value=1.5e-06 Score=83.17 Aligned_cols=153 Identities=15% Similarity=0.140 Sum_probs=87.2
Q ss_pred cEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCccccCCCchhHHh---h--hCCCcEEeeccCc-h
Q 012594 273 SVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRPDFMNKSHAKLPDGFVE---R--VSDRGKLVEWAPQ-E 341 (460)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~---~--~~~~v~~~~~~p~-~ 341 (460)
..+++..|+.. ..+.+..++++++.+ +.+++++..+. ..+.+.+ . ..+++.+.++..+ .
T Consensus 188 ~~~~l~~g~~~--~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 257 (360)
T cd04951 188 TFVILAVGRLV--EAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--------LRATLERLIKALGLSNRVKLLGLRDDIA 257 (360)
T ss_pred CEEEEEEeeCc--hhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--------cHHHHHHHHHhcCCCCcEEEecccccHH
Confidence 36777778753 234444455554332 34555543222 1111111 1 2467888887755 3
Q ss_pred hhcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHH
Q 012594 342 KVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKAL 417 (460)
Q Consensus 342 ~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~ 417 (460)
.+|..+++ +|.- |..+++.||+++|+|+|+. |...+...+.+ .|..+. .-+.++++++|.++
T Consensus 258 ~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~-----~~~~~~~~~~i~~l 323 (360)
T cd04951 258 AYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVP-----ISDPEALANKIDEI 323 (360)
T ss_pred HHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeC-----CCCHHHHHHHHHHH
Confidence 57877776 5443 2357899999999999985 45556666654 344442 24789999999999
Q ss_pred h-cChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012594 418 L-NDGGIKANALKMKQMARKSLVEGGSSFRNFESFVS 453 (460)
Q Consensus 418 l-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 453 (460)
+ .++.+++....-.+.+.+ .-+-....+.+.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~----~~s~~~~~~~~~~ 356 (360)
T cd04951 324 LKMSGEERDIIGARRERIVK----KFSINSIVQQWLT 356 (360)
T ss_pred HhCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 8 455565544443333333 3344444444443
No 87
>PLN00142 sucrose synthase
Probab=98.84 E-value=1.5e-06 Score=88.91 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCEEE----EEeCccchhHHhhccC--ccccCCCCeEEEEcCCCCCCC----CcCcccHHHHHHHHHhhch
Q 012594 23 KLSTKIAEHGIKVT----FVSTEHMHAKITASMP--QKAEQSSLITMVSIPDGLESH----EADRRDLHKVRQSMLTVMP 92 (460)
Q Consensus 23 ~La~~L~~rGh~V~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~ 92 (460)
.++++|+++||+|+ ++|.-.....-..+.. ..+...++..+..+|-+...+ .....+++.++..|...+.
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~ 398 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAA 398 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHH
Confidence 35578889999875 7775321111111111 123444578888888555322 1144555666655544322
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchH
Q 012594 93 GCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPA 143 (460)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 143 (460)
. .+.+. .. .+||+|.+..... .|..+|+++|||.+...++...
T Consensus 399 ~---~~~~~---~~--~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL~k 443 (815)
T PLN00142 399 S---EILAE---LQ--GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEK 443 (815)
T ss_pred H---HHHHh---cC--CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccchh
Confidence 1 22222 11 5799999996555 6778899999999987766543
No 88
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.83 E-value=2.7e-06 Score=82.43 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=51.0
Q ss_pred EeeccCchhhcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHH
Q 012594 334 LVEWAPQEKVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQE 409 (460)
Q Consensus 334 ~~~~~p~~~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~ 409 (460)
+.++.+..+++...++ ||.= +-..+++||+++|+|+|+.-... + ..+.+. +-|...+ +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~-------~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD-------DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC-------CHHH
Confidence 4566666678877666 7765 33578899999999999985432 2 334432 4554441 5789
Q ss_pred HHHHHHHHhcCh
Q 012594 410 IQRQVKALLNDG 421 (460)
Q Consensus 410 l~~~i~~~l~~~ 421 (460)
+.+++.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999754
No 89
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.82 E-value=6.6e-06 Score=79.33 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=70.3
Q ss_pred CCcEEeeccCc-hhhcCCCccccee--ec--cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCc
Q 012594 330 DRGKLVEWAPQ-EKVLGHPSVACFL--SH--CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGI 404 (460)
Q Consensus 330 ~~v~~~~~~p~-~~ll~~~~~~~~I--~h--gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~ 404 (460)
.++.+.++... ..++..+++ +| ++ |-..++.||+++|+|+|+... ..+...+.+. ..|..++ .
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~-----~ 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVP-----P 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeC-----C
Confidence 45666665443 357877776 55 33 446799999999999999754 3456666653 5788774 3
Q ss_pred cCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012594 405 ITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQL 455 (460)
Q Consensus 405 ~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 455 (460)
-+.++++++|.++++|++.++. +++..++...+.-+....++.+.+-+
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRA---HGAAGRARAEQQFSINAMVAAYAGLY 370 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4789999999999988754433 22222222222345445555554443
No 90
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.81 E-value=4e-06 Score=81.47 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCcEEeeccCchh---hcCCCcccceee--c-------cC-hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhccee
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLS--H-------CG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGL 395 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~--h-------gG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~ 395 (460)
.+++.+.+|+|+.+ ++..+++ +|. . -| ..+++||+++|+|+|+... ....+.+.+. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceE
Confidence 47799999999865 6766666 654 2 23 3678999999999999844 3455566653 5788
Q ss_pred EeecCCCCccCHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 396 RFFPDENGIITRQEIQRQVKALLN-DGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
.++ .-+.++++++|.++++ |++.+++ +++..++...+.-+....++++.+-+.
T Consensus 351 lv~-----~~d~~~la~ai~~l~~~d~~~~~~---~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVP-----ENDAQALAQRLAAFSQLDTDELAP---VVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeC-----CCCHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 874 3479999999999998 8764433 333333332234555666666665544
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.80 E-value=2.6e-06 Score=81.46 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=63.7
Q ss_pred hCCCcEEeeccCchh---hcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecC
Q 012594 328 VSDRGKLVEWAPQEK---VLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPD 400 (460)
Q Consensus 328 ~~~~v~~~~~~p~~~---ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~ 400 (460)
..+++.+.+++|+.+ ++..+++ ++.- |..+++.||+++|+|+|+.... .....+. ..|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~-- 319 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFD-- 319 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeC--
Confidence 467889999998764 6766666 5432 3456899999999999986542 2222332 2344553
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 012594 401 ENGIITRQEIQRQVKALLNDGGIKANALKMKQMA 434 (460)
Q Consensus 401 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 434 (460)
.-+.+++.++|.++++|++.+.+..+-+...
T Consensus 320 ---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 350 (365)
T cd03809 320 ---PLDPEALAAAIERLLEDPALREELRERGLAR 350 (365)
T ss_pred ---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2378999999999999987766665555433
No 92
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.80 E-value=1.6e-06 Score=81.11 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=91.8
Q ss_pred cEEEEEcCCCcCCCHHHHHHHHHHHHhCCCC-EEEEEcCCCCccccCCCchhHHhhhC--CCcEEeeccCchhhcCCCcc
Q 012594 273 SVIYVAFGSVAVLSQEQLEELALGLESLQQP-FLWVVRPDFMNKSHAKLPDGFVERVS--DRGKLVEWAPQEKVLGHPSV 349 (460)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~ll~~~~~ 349 (460)
++|.+--||-..--...+..++++...+..+ .++.+.... .. +.+.+... ..+.+.+ .-.+++.++++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~------~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl 238 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF------KG-KDLKEIYGDISEFEISY--DTHKALLEAEF 238 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC------cH-HHHHHHHhcCCCcEEec--cHHHHHHhhhH
Confidence 5899999986432234445455665444322 223322221 01 12221111 1223332 22468866666
Q ss_pred cceeeccChhhhhHhhhcCCceeeccc--cchhhhhHHHHH---hhhcceeEeec---------C-CCCccCHHHHHHHH
Q 012594 350 ACFLSHCGWNSTLEGLSMGVPFLCWPY--FADQYQNRNYIF---DAWKIGLRFFP---------D-ENGIITRQEIQRQV 414 (460)
Q Consensus 350 ~~~I~hgG~~sv~eal~~GvP~i~~P~--~~dQ~~~a~~v~---~~lg~g~~~~~---------~-~~~~~~~~~l~~~i 414 (460)
+|+-+|..|+ |+..+|+|+|+ ++ ..-|+.+|+++. . .|..-.+.. + ..++.|++.|.+.+
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 9999999999 99999999988 55 467899999988 4 355554420 0 13668999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 012594 415 KALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESF 451 (460)
Q Consensus 415 ~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 451 (460)
.+ . .+++.++..+++++... ++.+.+.++.+
T Consensus 314 ~~-~----~~~~~~~~~~~l~~~l~-~~a~~~~A~~i 344 (347)
T PRK14089 314 KE-M----DREKFFKKSKELREYLK-HGSAKNVAKIL 344 (347)
T ss_pred HH-H----HHHHHHHHHHHHHHHhc-CCHHHHHHHHH
Confidence 77 2 34455555555554432 35555554443
No 93
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.78 E-value=3.8e-06 Score=82.62 Aligned_cols=215 Identities=15% Similarity=0.113 Sum_probs=109.3
Q ss_pred ccEEEEccccccCccccccCCCeeeeC-ccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHH
Q 012594 214 SNWILCNSFYELDPPACDLIPNILTIG-PLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEE 292 (460)
Q Consensus 214 ~~~~l~~~~~~le~~~~~~~p~~~~vG-p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~ 292 (460)
.|.+++--.+|-++- ....-++.+|| |+...-... +...+..+-+...+++++|-+--||-..--...+..
T Consensus 362 vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv 433 (608)
T PRK01021 362 LDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTI 433 (608)
T ss_pred hhhheecCccCHHHH-HhcCCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 355555444444433 33455799999 554432111 122222333333445679999999843222233455
Q ss_pred HHHHHH--hC--CCCEEEEEcCCCCccccCCCchhHHhhh-CC---CcEEeeccCchhhcCCCcccceeeccChhhhhHh
Q 012594 293 LALGLE--SL--QQPFLWVVRPDFMNKSHAKLPDGFVERV-SD---RGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLEG 364 (460)
Q Consensus 293 ~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~---~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~ea 364 (460)
++++.+ .. +.++++..... ...+.+.+.. .. .+.+..--...++++.+++ .+.-+|. .++|+
T Consensus 434 ~l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEa 503 (608)
T PRK01021 434 QVQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLET 503 (608)
T ss_pred HHHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHH
Confidence 666665 33 33454433322 0011111111 11 1233211012467866665 7776664 46899
Q ss_pred hhcCCceeec-cccchhhhhHHHHHhhh----------cceeEeecCC---CCccCHHHHHHHHHHHhcChHHHHHHHHH
Q 012594 365 LSMGVPFLCW-PYFADQYQNRNYIFDAW----------KIGLRFFPDE---NGIITRQEIQRQVKALLNDGGIKANALKM 430 (460)
Q Consensus 365 l~~GvP~i~~-P~~~dQ~~~a~~v~~~l----------g~g~~~~~~~---~~~~~~~~l~~~i~~~l~~~~~~~~a~~l 430 (460)
..+|+|||++ -...=-...++++.+ . =+|..+-++= .++.+++.|++++ ++|.|++++++.++=
T Consensus 504 AL~g~PmVV~YK~s~Lty~Iak~Lvk-i~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~ 581 (608)
T PRK01021 504 ALNQTPTIVTCQLRPFDTFLAKYIFK-IILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDA 581 (608)
T ss_pred HHhCCCEEEEEecCHHHHHHHHHHHh-ccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 9999999886 333333345555543 1 0122221110 1568999999997 888888666555555
Q ss_pred HHHHHHHhhcCCChHHHH
Q 012594 431 KQMARKSLVEGGSSFRNF 448 (460)
Q Consensus 431 ~~~~~~~~~~~g~~~~~~ 448 (460)
-+++++.+.+|-...+.+
T Consensus 582 l~~lr~~Lg~~~~~~~~~ 599 (608)
T PRK01021 582 CRDLYQAMNESASTMKEC 599 (608)
T ss_pred HHHHHHHhcCCCCCHHHH
Confidence 555555544344443333
No 94
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.77 E-value=3.6e-06 Score=81.80 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCCcEEeeccCch-hhcCCCccccee--ec--cCh-hhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCC
Q 012594 329 SDRGKLVEWAPQE-KVLGHPSVACFL--SH--CGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDEN 402 (460)
Q Consensus 329 ~~~v~~~~~~p~~-~ll~~~~~~~~I--~h--gG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~ 402 (460)
.++|.+.++++.. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .... |.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC----
Confidence 4678999999864 47877776 55 32 354 46999999999999997643321 1222 6777662
Q ss_pred CccCHHHHHHHHHHHhcChHHHHHH
Q 012594 403 GIITRQEIQRQVKALLNDGGIKANA 427 (460)
Q Consensus 403 ~~~~~~~l~~~i~~~l~~~~~~~~a 427 (460)
-+.++++++|.++++|++.+++.
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~ 369 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREEL 369 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHH
Confidence 37899999999999988654443
No 95
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.75 E-value=1.5e-06 Score=82.81 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=80.5
Q ss_pred CcEEEEEcCCC---cCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhh--CCCcEEeeccCch---hh
Q 012594 272 GSVIYVAFGSV---AVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERV--SDRGKLVEWAPQE---KV 343 (460)
Q Consensus 272 ~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~---~l 343 (460)
++.+++++=.. .....+.+..+++++...+.++++........ ...+.+.+.+.. .+|+.+.+.+++. .+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~--~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG--SRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC--chHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 45888877543 23446779999999987776666665433100 000111111111 4678888766654 48
Q ss_pred cCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeE-eecCCCCccCHHHHHHHHHHHhcChH
Q 012594 344 LGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLR-FFPDENGIITRQEIQRQVKALLNDGG 422 (460)
Q Consensus 344 l~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~-~~~~~~~~~~~~~l~~~i~~~l~~~~ 422 (460)
+.++++ +|+-++.+. .||.+.|+|+|.+- +-+ .-+ + .|..+. + ..+++.|.+++.+++ +++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~v------g~~~~~I~~a~~~~~-~~~ 340 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVIDV------DPDKEEIVKAIEKLL-DPA 340 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEEe------CCCHHHHHHHHHHHh-ChH
Confidence 877666 998875555 99999999999874 211 111 2 243333 3 246899999999965 444
Q ss_pred H
Q 012594 423 I 423 (460)
Q Consensus 423 ~ 423 (460)
+
T Consensus 341 ~ 341 (365)
T TIGR03568 341 F 341 (365)
T ss_pred H
Confidence 3
No 96
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=2.8e-05 Score=72.46 Aligned_cols=319 Identities=15% Similarity=0.096 Sum_probs=176.6
Q ss_pred CCCccChHHHHHHHHHHHhC--CCEEEEEe-CccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHH
Q 012594 12 FPAQGHAGPLMKLSTKIAEH--GIKVTFVS-TEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSML 88 (460)
Q Consensus 12 ~~~~gH~~p~~~La~~L~~r--Gh~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
.-|-|-++...+|.++|.++ ++.|++-| |+...+.+.+... ..+...-+|-+.+
T Consensus 56 aaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~------~~v~h~YlP~D~~----------------- 112 (419)
T COG1519 56 AASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG------DSVIHQYLPLDLP----------------- 112 (419)
T ss_pred ecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC------CCeEEEecCcCch-----------------
Confidence 35789999999999999998 88888887 5556666655531 2344444553222
Q ss_pred hhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHH--HHHHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCCCCC
Q 012594 89 TVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWAL--EVAEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGNA 166 (460)
Q Consensus 89 ~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (460)
..++.+++. ++||++|.-....|-. .-+++.|+|.+.+..=..--.
T Consensus 113 ----~~v~rFl~~-------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS--------------------- 160 (419)
T COG1519 113 ----IAVRRFLRK-------WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRS--------------------- 160 (419)
T ss_pred ----HHHHHHHHh-------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhh---------------------
Confidence 235667777 9999888776666554 457788999997542111000
Q ss_pred CCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHh-hcccccEEEEccccccCccccc-cCCCeeeeCccCC
Q 012594 167 MTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQ-NLKISNWILCNSFYELDPPACD-LIPNILTIGPLLG 244 (460)
Q Consensus 167 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~le~~~~~-~~p~~~~vGp~~~ 244 (460)
+. . +..+....+ ....-++++..+..+-+-- .. -.+++...|.+-.
T Consensus 161 -------------------~~-~-----------y~k~~~~~~~~~~~i~li~aQse~D~~Rf-~~LGa~~v~v~GNlKf 208 (419)
T COG1519 161 -------------------FA-R-----------YAKLKFLARLLFKNIDLILAQSEEDAQRF-RSLGAKPVVVTGNLKF 208 (419)
T ss_pred -------------------hH-H-----------HHHHHHHHHHHHHhcceeeecCHHHHHHH-HhcCCcceEEecceee
Confidence 00 0 000011111 1234456666654443221 11 1234666666554
Q ss_pred CCCccCccCCCCCCCCc---hhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCC-CEEEEEcCCCCcc-ccCC
Q 012594 245 RDHLEHSAVNFWPEDST---CLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESLQQ-PFLWVVRPDFMNK-SHAK 319 (460)
Q Consensus 245 ~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~-~~~~ 319 (460)
+.... ...+.+ ++..++.. + .+.|..+|. ....+.+-....++.+... -.++.+..+.+.. ....
T Consensus 209 d~~~~------~~~~~~~~~~r~~l~~~--r-~v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~ 278 (419)
T COG1519 209 DIEPP------PQLAAELAALRRQLGGH--R-PVWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVEN 278 (419)
T ss_pred cCCCC------hhhHHHHHHHHHhcCCC--C-ceEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHH
Confidence 43221 011112 22223221 3 566666663 2244445555555544432 2233334331100 0000
Q ss_pred ------C-----chhHHhhhCCCcEEeeccCch-hhcCCCcc----cceeeccChhhhhHhhhcCCceeeccccchhhhh
Q 012594 320 ------L-----PDGFVERVSDRGKLVEWAPQE-KVLGHPSV----ACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQN 383 (460)
Q Consensus 320 ------~-----~~~~~~~~~~~v~~~~~~p~~-~ll~~~~~----~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~ 383 (460)
+ ..+-....+.+|.+.+-+--. .++.-+++ +-++.+||.| .+|++++|+|+|.=|+...|.+.
T Consensus 279 l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei 357 (419)
T COG1519 279 LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDI 357 (419)
T ss_pred HHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHH
Confidence 0 000000012245555444322 33433333 2255688887 68999999999999999999999
Q ss_pred HHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 012594 384 RNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARK 436 (460)
Q Consensus 384 a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 436 (460)
++++.++ |.|+.++ +.+.|.+++..+++|++.+++..+-+..+-+
T Consensus 358 ~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 358 AERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred HHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999996 9999993 3888999999999888666555444444443
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.69 E-value=1.6e-06 Score=82.88 Aligned_cols=138 Identities=10% Similarity=0.145 Sum_probs=90.6
Q ss_pred EEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchh---hcCCCcccc
Q 012594 275 IYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEK---VLGHPSVAC 351 (460)
Q Consensus 275 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---ll~~~~~~~ 351 (460)
.++..|+.. ..+.+..++++++..+.+++++..+. ..+.+.+...+||.+.+++|+.+ +++.+++-+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEE
Confidence 345567643 34557778888887777766554432 11222323578999999999854 777777633
Q ss_pred eeeccCh-hhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh-HHHHHHHH
Q 012594 352 FLSHCGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG-GIKANALK 429 (460)
Q Consensus 352 ~I~hgG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~a~~ 429 (460)
+-+.-|. .++.||+++|+|+|+.... .....+.+. +.|..++. -+.+.++++|.++++|+ ..++++++
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~ 336 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRA 336 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHH
Confidence 2234343 4678999999999998543 344455653 68888843 47888999999999988 45555444
Q ss_pred HHH
Q 012594 430 MKQ 432 (460)
Q Consensus 430 l~~ 432 (460)
-++
T Consensus 337 ~~~ 339 (351)
T cd03804 337 HAE 339 (351)
T ss_pred HHH
Confidence 433
No 98
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.69 E-value=8.8e-06 Score=76.63 Aligned_cols=214 Identities=18% Similarity=0.156 Sum_probs=114.9
Q ss_pred cccEEEEccccccCccccccCCCeeeeC-ccCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHH
Q 012594 213 ISNWILCNSFYELDPPACDLIPNILTIG-PLLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLE 291 (460)
Q Consensus 213 ~~~~~l~~~~~~le~~~~~~~p~~~~vG-p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~ 291 (460)
..|.+++--.++-++. ....-++.||| |+...-... ..+....+.+ -.+++++|.+--||-..--...+.
T Consensus 133 ~~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP 203 (373)
T PF02684_consen 133 YVDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLP 203 (373)
T ss_pred HHhheeECCcccHHHH-hccCCCeEEECCcchhhhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHH
Confidence 3455555555544433 33445799999 555432221 1122222333 234566999999984221123334
Q ss_pred HHHHHHHh---C--CCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeec-cCchhhcCCCcccceeeccChhhhhHhh
Q 012594 292 ELALGLES---L--QQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEW-APQEKVLGHPSVACFLSHCGWNSTLEGL 365 (460)
Q Consensus 292 ~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~ll~~~~~~~~I~hgG~~sv~eal 365 (460)
.++++.+. . +.++++...... ....-.........++.+.-. -.-.++|..+++ .+.-.| ..++|+.
T Consensus 204 ~~l~aa~~l~~~~p~l~fvvp~a~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~A 276 (373)
T PF02684_consen 204 IFLEAAKLLKKQRPDLQFVVPVAPEV----HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAA 276 (373)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCHH----HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHH
Confidence 45555432 2 334554443220 000000111112233333222 233457766665 555544 4568999
Q ss_pred hcCCceeec-cccchhhhhHHHHHhhhcc------------eeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHH
Q 012594 366 SMGVPFLCW-PYFADQYQNRNYIFDAWKI------------GLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQ 432 (460)
Q Consensus 366 ~~GvP~i~~-P~~~dQ~~~a~~v~~~lg~------------g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~ 432 (460)
.+|+|||++ -...=-+..|+++.+ ... -..+- .+..|++.|.+++.++|.|++.++..+...+
T Consensus 277 l~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEli---Q~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~ 352 (373)
T PF02684_consen 277 LLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELI---QEDATPENIAAELLELLENPEKRKKQKELFR 352 (373)
T ss_pred HhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhh---cccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999877 333444556666643 222 11111 3678999999999999999987777777777
Q ss_pred HHHHHhhcCCChHH
Q 012594 433 MARKSLVEGGSSFR 446 (460)
Q Consensus 433 ~~~~~~~~~g~~~~ 446 (460)
.+++....|..+..
T Consensus 353 ~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 353 EIRQLLGPGASSRA 366 (373)
T ss_pred HHHHhhhhccCCHH
Confidence 77776555665544
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.64 E-value=1.9e-05 Score=77.14 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=55.9
Q ss_pred CCCcEEeeccCchh---hcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHH---hhhcceeEee
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIF---DAWKIGLRFF 398 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~---~~lg~g~~~~ 398 (460)
.++|.+.+++|+.+ +|..+++ +|+- |-.-++.||+++|+|+|+.-.... ....+. .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 57899999998765 7766666 5532 223588999999999998754321 112222 32 567665
Q ss_pred cCCCCccCHHHHHHHHHHHhcChH
Q 012594 399 PDENGIITRQEIQRQVKALLNDGG 422 (460)
Q Consensus 399 ~~~~~~~~~~~l~~~i~~~l~~~~ 422 (460)
. +.++++++|.++++++.
T Consensus 377 ----~--d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCCH
Confidence 2 78999999999998653
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=8e-05 Score=76.24 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCcEEeeccCch-hhcCCCcccceee---ccC-hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 329 SDRGKLVEWAPQE-KVLGHPSVACFLS---HCG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 329 ~~~v~~~~~~p~~-~ll~~~~~~~~I~---hgG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
.++|.+.+|.+.. .+|..+++ +|. +.| .++++||+++|+|+|+... ......+.+. ..|..++. +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCC---C
Confidence 4788999987753 47877666 553 445 5788999999999999854 3455666653 56888864 4
Q ss_pred ccCHHHHHHHHHHHhc----ChHHHHHHHHHH
Q 012594 404 IITRQEIQRQVKALLN----DGGIKANALKMK 431 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~----~~~~~~~a~~l~ 431 (460)
+.+.+.+.+++.+++. ++.+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 5566666666666554 556666554433
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.57 E-value=2.4e-07 Score=87.39 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=79.7
Q ss_pred CCCcEEEEEcCCCcCCC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCch---
Q 012594 270 AVGSVIYVAFGSVAVLS-Q---EQLEELALGLESL-QQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQE--- 341 (460)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--- 341 (460)
..++.+++++=...... + ..+..+++++.+. +.++||.+.+..... ..+ ....+.. +|+++...+++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~--~~i-~~~l~~~-~~v~~~~~l~~~~~l 253 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS--DII-IEKLKKY-DNVRLIEPLGYEEYL 253 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH--HHH-HHHHTT--TTEEEE----HHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH--HHH-HHHhccc-CCEEEECCCCHHHHH
Confidence 45679999984443333 3 4455566666555 667888876441110 011 1111122 488888766654
Q ss_pred hhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 342 KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 342 ~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
.+|.++++ +|+..| |-..||.++|+|+|.+ .|+...-+-+ . .|..+.+ + .+.+.|.+++++++.+.
T Consensus 254 ~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r-~-~~~nvlv-----~-~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 254 SLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGR-E-RGSNVLV-----G-TDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHH-H-TTSEEEE-----T-SSHHHHHHHHHHHHH-H
T ss_pred HHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHH-h-hcceEEe-----C-CCHHHHHHHHHHHHhCh
Confidence 58878666 999999 5555999999999999 3333322222 2 2666665 2 58999999999999874
Q ss_pred HHHHHHHH
Q 012594 422 GIKANALK 429 (460)
Q Consensus 422 ~~~~~a~~ 429 (460)
...++.+.
T Consensus 320 ~~~~~~~~ 327 (346)
T PF02350_consen 320 DFYRKLKN 327 (346)
T ss_dssp HHHHHHHC
T ss_pred HHHHhhcc
Confidence 44444433
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.53 E-value=2e-05 Score=78.19 Aligned_cols=130 Identities=11% Similarity=0.135 Sum_probs=71.8
Q ss_pred cEEEEEcCCCcCCCHHHHHHHHHHHHh---CCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEE-eeccCch--hhcCC
Q 012594 273 SVIYVAFGSVAVLSQEQLEELALGLES---LQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKL-VEWAPQE--KVLGH 346 (460)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~--~ll~~ 346 (460)
.++++..|... +.+.+..++++++. .+.+++++..+.. .....-..+.++.+.++.+ .+|-... .+++.
T Consensus 282 ~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~g~~---~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~ 356 (466)
T PRK00654 282 APLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGTGDP---ELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG 356 (466)
T ss_pred CcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEecCcH---HHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh
Confidence 35667777753 23444455555533 3566665533220 0000001122233456654 4663222 46777
Q ss_pred Ccccceee---ccCh-hhhhHhhhcCCceeeccccchhhhhHHHHH------hhhcceeEeecCCCCccCHHHHHHHHHH
Q 012594 347 PSVACFLS---HCGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIF------DAWKIGLRFFPDENGIITRQEIQRQVKA 416 (460)
Q Consensus 347 ~~~~~~I~---hgG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~------~~lg~g~~~~~~~~~~~~~~~l~~~i~~ 416 (460)
+++ +|. +-|. .+.+||+++|+|+|+....+ ....+. +. +.|..++ .-++++++++|.+
T Consensus 357 aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~-~~G~lv~-----~~d~~~la~~i~~ 424 (466)
T PRK00654 357 ADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGE-ATGFVFD-----DFNAEDLLRALRR 424 (466)
T ss_pred CCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCC-CceEEeC-----CCCHHHHHHHHHH
Confidence 666 663 2344 47899999999999874432 112222 22 6788884 3478999999999
Q ss_pred Hhc
Q 012594 417 LLN 419 (460)
Q Consensus 417 ~l~ 419 (460)
+++
T Consensus 425 ~l~ 427 (466)
T PRK00654 425 ALE 427 (466)
T ss_pred HHH
Confidence 886
No 103
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.52 E-value=8.8e-05 Score=71.41 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCCcEEeeccCchh---hcCCCccccee------eccC-hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEee
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFL------SHCG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFF 398 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I------~hgG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~ 398 (460)
.+||++.+++|+.+ .+.+.++.++- +.++ .+.+.|++++|+|+|+.++ ...++. +-|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~--~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY--EDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh--cCcEEEe
Confidence 47899999999775 67677763221 2233 2468999999999998753 222332 3233332
Q ss_pred cCCCCccCHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 399 PDENGIITRQEIQRQVKALLNDGG-IKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 399 ~~~~~~~~~~~l~~~i~~~l~~~~-~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
. -+.+++.++|.+++.++. .+.+ +... +.+ ..+-...++.+.+.|.+.
T Consensus 324 ----~-~d~~~~~~ai~~~l~~~~~~~~~--~~~~-~~~----~~sW~~~a~~~~~~l~~~ 372 (373)
T cd04950 324 ----A-DDPEEFVAAIEKALLEDGPARER--RRLR-LAA----QNSWDARAAEMLEALQEN 372 (373)
T ss_pred ----C-CCHHHHHHHHHHHHhcCCchHHH--HHHH-HHH----HCCHHHHHHHHHHHHHhc
Confidence 1 279999999999875542 2211 1111 222 345555666666666654
No 104
>PLN02949 transferase, transferring glycosyl groups
Probab=98.49 E-value=0.00015 Score=71.33 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=52.0
Q ss_pred CCCcEEeeccCchh---hcCCCcccceee---ccCh-hhhhHhhhcCCceeeccccchhhhhHHHHHh-hhc-ceeEeec
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLS---HCGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFD-AWK-IGLRFFP 399 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~---hgG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~-~lg-~g~~~~~ 399 (460)
+++|.+.+++|+.+ +|..+++ +|+ +-|. .++.||+++|+|+|+....+-- ...+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 57899999998765 6766665 663 2333 4789999999999998543210 011111 001 23332
Q ss_pred CCCCccCHHHHHHHHHHHhcC
Q 012594 400 DENGIITRQEIQRQVKALLND 420 (460)
Q Consensus 400 ~~~~~~~~~~l~~~i~~~l~~ 420 (460)
. +.++++++|.+++++
T Consensus 407 ---~--~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 ---T--TVEEYADAILEVLRM 422 (463)
T ss_pred ---C--CHHHHHHHHHHHHhC
Confidence 1 789999999999984
No 105
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.49 E-value=8e-05 Score=74.18 Aligned_cols=161 Identities=11% Similarity=0.068 Sum_probs=84.9
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHH---hCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCch---hhcCCC
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLE---SLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQE---KVLGHP 347 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~ll~~~ 347 (460)
++++..|.... .+.+..+++++. +.+.+++++..+.. .....-..+.++.+.++.+....+.. .+++.+
T Consensus 292 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~---~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 366 (473)
T TIGR02095 292 PLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGDP---ELEEALRELAERYPGNVRVIIGYDEALAHLIYAGA 366 (473)
T ss_pred CEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCCH---HHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhC
Confidence 56666777542 333444455543 33455555433210 00000111222345667766555543 377666
Q ss_pred cccceeec---cCh-hhhhHhhhcCCceeeccccchhhhhHHHHHh-----hhcceeEeecCCCCccCHHHHHHHHHHHh
Q 012594 348 SVACFLSH---CGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFD-----AWKIGLRFFPDENGIITRQEIQRQVKALL 418 (460)
Q Consensus 348 ~~~~~I~h---gG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~-----~lg~g~~~~~~~~~~~~~~~l~~~i~~~l 418 (460)
++ ++.= -|. .+++||+++|+|+|+....+ ....+.+ .-+.|..+. .-++++++++|.+++
T Consensus 367 Dv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~-----~~d~~~la~~i~~~l 435 (473)
T TIGR02095 367 DF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFE-----EYDPGALLAALSRAL 435 (473)
T ss_pred CE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeC-----CCCHHHHHHHHHHHH
Confidence 66 6632 233 47899999999999875432 2222222 016788884 357899999999998
Q ss_pred c----ChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 419 N----DGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 419 ~----~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
. +++.++ ++++...+ ..-+-.+.++++++-.+
T Consensus 436 ~~~~~~~~~~~---~~~~~~~~---~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 436 RLYRQDPSLWE---ALQKNAMS---QDFSWDKSAKQYVELYR 471 (473)
T ss_pred HHHhcCHHHHH---HHHHHHhc---cCCCcHHHHHHHHHHHH
Confidence 6 554333 33332221 23444455555554443
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.43 E-value=8.4e-05 Score=74.19 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=83.2
Q ss_pred cEEEEEcCCCcCCCHHHHHHHHHHHH---hCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCch---hhcCC
Q 012594 273 SVIYVAFGSVAVLSQEQLEELALGLE---SLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQE---KVLGH 346 (460)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~ll~~ 346 (460)
.++++..|... ..+.+..+++++. +.+.+++++..+.. .....-..+.++.++|+.+....++. .++..
T Consensus 296 ~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 370 (476)
T cd03791 296 APLFGFVGRLT--EQKGIDLLLEALPELLELGGQLVILGSGDP---EYEEALRELAARYPGRVAVLIGYDEALAHLIYAG 370 (476)
T ss_pred CCEEEEEeecc--ccccHHHHHHHHHHHHHcCcEEEEEecCCH---HHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh
Confidence 36667777754 2333444444443 33455555443220 00000011122235677755333333 36766
Q ss_pred Ccccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhh-----hcceeEeecCCCCccCHHHHHHHHHHH
Q 012594 347 PSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDA-----WKIGLRFFPDENGIITRQEIQRQVKAL 417 (460)
Q Consensus 347 ~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~-----lg~g~~~~~~~~~~~~~~~l~~~i~~~ 417 (460)
+++ ++.- |-..+.+||+++|+|+|+....+ ....+.+. -|.|..++ .-+.+++.++|.++
T Consensus 371 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~~~~-----~~~~~~l~~~i~~~ 439 (476)
T cd03791 371 ADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGFVFE-----GYNADALLAALRRA 439 (476)
T ss_pred CCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeEEeC-----CCCHHHHHHHHHHH
Confidence 665 6632 22347799999999999875432 22222220 14788884 34689999999998
Q ss_pred hcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012594 418 LNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQ 454 (460)
Q Consensus 418 l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 454 (460)
++...-++...++++...+ ..-+-...++++++.
T Consensus 440 l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~ 473 (476)
T cd03791 440 LALYRDPEAWRKLQRNAMA---QDFSWDRSAKEYLEL 473 (476)
T ss_pred HHHHcCHHHHHHHHHHHhc---cCCChHHHHHHHHHH
Confidence 8532213333444444332 133334444444443
No 107
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.30 E-value=9e-05 Score=73.63 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=78.8
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhC---CCCE-EEEEcCCCCccccCCCchhHHhh-----hCCCcEEeeccCchhhc
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESL---QQPF-LWVVRPDFMNKSHAKLPDGFVER-----VSDRGKLVEWAPQEKVL 344 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~-i~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~ll 344 (460)
.+++..|+.. ..+.+..+++|+..+ ...+ +..++.+. ..+.+.+. ..++|.+.++.+...++
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~-------~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~ 390 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGG-------EKQKLQKIINENQAQDYIHLKGHRNLSEVY 390 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECch-------hHHHHHHHHHHcCCCCeEEEcCCCCHHHHH
Confidence 5667777754 334555566665432 2233 23344331 11222221 24668888988877888
Q ss_pred CCCcccceee----ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecC--CCCccC-HHHHHHHHHHH
Q 012594 345 GHPSVACFLS----HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPD--ENGIIT-RQEIQRQVKAL 417 (460)
Q Consensus 345 ~~~~~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~--~~~~~~-~~~l~~~i~~~ 417 (460)
..+++ +|. =|-..+++||+++|+|+|+.... ......++.. .-|..++.. +...-+ .++++++|.++
T Consensus 391 ~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~l 464 (500)
T TIGR02918 391 KDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEY 464 (500)
T ss_pred HhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 77776 554 23346899999999999998432 1344555553 567777531 111112 78899999999
Q ss_pred hcCh
Q 012594 418 LNDG 421 (460)
Q Consensus 418 l~~~ 421 (460)
++++
T Consensus 465 l~~~ 468 (500)
T TIGR02918 465 FNSN 468 (500)
T ss_pred hChH
Confidence 9544
No 108
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=0.00031 Score=64.96 Aligned_cols=348 Identities=17% Similarity=0.106 Sum_probs=171.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
+||.+++.-.+|++.- -.|.++|++|=-+|.|++-.. +..++. |++- + ++..+....++...+
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG--~~m~ae---------G~~s--l---~~~~elsvmGf~EVL 64 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGG--EKMEAE---------GLES--L---FDMEELSVMGFVEVL 64 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEecc--HHHHhc---------cCcc--c---cCHHHHHHhhHHHHH
Confidence 3899999888888764 357778876622677765422 223333 3221 0 011111222233333
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEE-eCCCcchHHHHH---HHhC--CceEEEc-ccchHHHHHHHhhhhHhhh
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVI-ADLTVGWALEVA---EQMG--IARAAVI-PYAPASLALVLHAPKLVEA 157 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv-~D~~~~~~~~~A---~~lg--iP~v~~~-~~~~~~~~~~~~~~~~~~~ 157 (460)
..+-. +....+++++.+.. .+||++| .|.-.+ ...+| ++.| ||.|.+. |+-.
T Consensus 65 ~~lp~-llk~~~~~~~~i~~----~kpD~~i~IDsPdF-nl~vak~lrk~~p~i~iihYV~PsVW--------------- 123 (381)
T COG0763 65 GRLPR-LLKIRRELVRYILA----NKPDVLILIDSPDF-NLRVAKKLRKAGPKIKIIHYVSPSVW--------------- 123 (381)
T ss_pred HHHHH-HHHHHHHHHHHHHh----cCCCEEEEeCCCCC-chHHHHHHHHhCCCCCeEEEECccee---------------
Confidence 33221 12335566666666 8999777 565333 44444 4556 8888643 1111
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHHHHHHHHHhhcccccEEEEccccccCccccccCCCee
Q 012594 158 GLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFFGACSAVAQNLKISNWILCNSFYELDPPACDLIPNIL 237 (460)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~p~~~ 237 (460)
-|-.. +. .......|.++.--.++-++. ....-+.+
T Consensus 124 -------------------------------AWr~~--Ra----------~~i~~~~D~lLailPFE~~~y-~k~g~~~~ 159 (381)
T COG0763 124 -------------------------------AWRPK--RA----------VKIAKYVDHLLAILPFEPAFY-DKFGLPCT 159 (381)
T ss_pred -------------------------------eechh--hH----------HHHHHHhhHeeeecCCCHHHH-HhcCCCeE
Confidence 00000 00 001134455555444443332 22222489
Q ss_pred eeCc-cCCCCCccCccCCCCCCCCchhhhhccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC-----CCCEEEEEcCC
Q 012594 238 TIGP-LLGRDHLEHSAVNFWPEDSTCLGWLDKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL-----QQPFLWVVRPD 311 (460)
Q Consensus 238 ~vGp-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~ 311 (460)
|||- +....+.. +......+-+....+++++.+-.||-..--...+..+.++...+ +.+++.-+...
T Consensus 160 yVGHpl~d~i~~~-------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~ 232 (381)
T COG0763 160 YVGHPLADEIPLL-------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA 232 (381)
T ss_pred EeCChhhhhcccc-------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH
Confidence 9994 44433221 23333444455555667999999984321122233344444333 34566554433
Q ss_pred CCccccCCCchhHHhhhCCCc-EEeecc-Cch--hhcCCCcccceeeccChhhhhHhhhcCCceeecc-ccchhhhhHHH
Q 012594 312 FMNKSHAKLPDGFVERVSDRG-KLVEWA-PQE--KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWP-YFADQYQNRNY 386 (460)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~--~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P-~~~dQ~~~a~~ 386 (460)
....+..... ..+. ...-++ ++. +.+..+++ .+.-+|. -++|+..+|+|||+.= ...=-+..+.+
T Consensus 233 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~ 302 (381)
T COG0763 233 ----KYRRIIEEAL---KWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKR 302 (381)
T ss_pred ----HHHHHHHHHh---hccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHH
Confidence 1111111111 1111 111121 222 36655554 6666654 4589999999998761 11122233444
Q ss_pred HHhhhcceeEee--------cCC-CCccCHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012594 387 IFDAWKIGLRFF--------PDE-NGIITRQEIQRQVKALLNDG----GIKANALKMKQMARKSLVEGGSSFRNFESFVS 453 (460)
Q Consensus 387 v~~~lg~g~~~~--------~~~-~~~~~~~~l~~~i~~~l~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 453 (460)
... +...-..+ ++= .++++++.|++++..++.|+ .+++...+|.+.++ +++.++.+.+-+++
T Consensus 303 lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~ 377 (381)
T COG0763 303 LVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLE 377 (381)
T ss_pred hcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHH
Confidence 332 22111111 100 25678999999999999988 35555555555555 36677777777776
Q ss_pred HHH
Q 012594 454 QLK 456 (460)
Q Consensus 454 ~l~ 456 (460)
.+.
T Consensus 378 ~~~ 380 (381)
T COG0763 378 LLL 380 (381)
T ss_pred Hhc
Confidence 553
No 109
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.25 E-value=1.2e-05 Score=63.02 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=76.4
Q ss_pred EEEEEcCCCcCCCHHHH-----HHHHHHHHhCCC-CEEEEEcCCCCccccCCCchhHHhh-hCCCcEE--eeccCc-hhh
Q 012594 274 VIYVAFGSVAVLSQEQL-----EELALGLESLQQ-PFLWVVRPDFMNKSHAKLPDGFVER-VSDRGKL--VEWAPQ-EKV 343 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~-----~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~--~~~~p~-~~l 343 (460)
.+|||-||... ++.+ .+..+.+.+.+. +.++..+++- ...++..... ..+.+.+ .+|-|- .+.
T Consensus 5 ~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----~~~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----PFFGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred EEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----cCCCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 79999999641 2222 235555666665 5677776551 0112221111 1233333 377786 456
Q ss_pred cCCCcccceeeccChhhhhHhhhcCCceeeccc----cchhhhhHHHHHhhhcceeEee
Q 012594 344 LGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPY----FADQYQNRNYIFDAWKIGLRFF 398 (460)
Q Consensus 344 l~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~----~~dQ~~~a~~v~~~lg~g~~~~ 398 (460)
.+.+++ ||+|+|.||++|.|..|+|.|+++- ...|-..|..+++ .|.=..-.
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~ 133 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCT 133 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEee
Confidence 655666 9999999999999999999999995 4689999999988 48766664
No 110
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.24 E-value=0.0007 Score=67.42 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=62.7
Q ss_pred CCCcEEeeccCchhhcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhh----h-cceeEeec
Q 012594 329 SDRGKLVEWAPQEKVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDA----W-KIGLRFFP 399 (460)
Q Consensus 329 ~~~v~~~~~~p~~~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~----l-g~g~~~~~ 399 (460)
.++|.+.+.....+++..+++ +|.- |-..+++||+++|+|+|+. |.......+.+. + ..|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEEC-
Confidence 478888885555668866665 5533 3457899999999999996 444444555441 0 2777774
Q ss_pred CCCCccCHHHHHHHHHHHhcChHHHHHHHH
Q 012594 400 DENGIITRQEIQRQVKALLNDGGIKANALK 429 (460)
Q Consensus 400 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 429 (460)
.-+.++++++|.++++|++.++++.+
T Consensus 426 ----~~d~~~la~ai~~ll~~~~~~~~~~~ 451 (475)
T cd03813 426 ----PADPEALARAILRLLKDPELRRAMGE 451 (475)
T ss_pred ----CCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35789999999999999865544433
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.24 E-value=0.00059 Score=68.37 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=52.1
Q ss_pred CcEEeeccCch-hhcCCCcccceee----ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCcc
Q 012594 331 RGKLVEWAPQE-KVLGHPSVACFLS----HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGII 405 (460)
Q Consensus 331 ~v~~~~~~p~~-~ll~~~~~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~ 405 (460)
++.+.++.++. .++...++ ||. -|=..+++||+++|+|+|+........ +.. |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------C
Confidence 35666777655 48876666 664 233568899999999999996654321 222 3333331 2
Q ss_pred CHHHHHHHHHHHhcChH
Q 012594 406 TRQEIQRQVKALLNDGG 422 (460)
Q Consensus 406 ~~~~l~~~i~~~l~~~~ 422 (460)
+.+.++++|.++|.++.
T Consensus 667 D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 667 TSEDFVAKVKEALANEP 683 (794)
T ss_pred CHHHHHHHHHHHHhCch
Confidence 68999999999998875
No 112
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=0.00015 Score=67.11 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCcCCCHHHHHHHHHHH----HhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEe---eccCchhhc
Q 012594 272 GSVIYVAFGSVAVLSQEQLEELALGL----ESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLV---EWAPQEKVL 344 (460)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~a~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~p~~~ll 344 (460)
+..+++|+=.-.... +.+..+.+++ +.. ..+.+++..+... ....+ ....-...+|+++. +|.+...++
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~~-~v~e~-~~~~L~~~~~v~li~pl~~~~f~~L~ 279 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPRP-RVREL-VLKRLKNVERVKLIDPLGYLDFHNLM 279 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCCh-hhhHH-HHHHhCCCCcEEEeCCcchHHHHHHH
Confidence 348888764333333 4455555544 333 3344444433110 00000 00000123567765 666777899
Q ss_pred CCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHH
Q 012594 345 GHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIK 424 (460)
Q Consensus 345 ~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 424 (460)
.++.+ ++|-.|. -.-||-..|+|++++=...+++. ++ ++ |.-..+. .+.+.+.+++.+++++++..
T Consensus 280 ~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lvg------~~~~~i~~~~~~ll~~~~~~ 345 (383)
T COG0381 280 KNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILVG------TDEENILDAATELLEDEEFY 345 (383)
T ss_pred HhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEeC------ccHHHHHHHHHHHhhChHHH
Confidence 88765 8888763 46899999999999999999987 33 33 6666663 46799999999999988777
Q ss_pred HHHHHHHHHH
Q 012594 425 ANALKMKQMA 434 (460)
Q Consensus 425 ~~a~~l~~~~ 434 (460)
+|......-.
T Consensus 346 ~~m~~~~npY 355 (383)
T COG0381 346 ERMSNAKNPY 355 (383)
T ss_pred HHHhcccCCC
Confidence 6554444333
No 113
>PLN02316 synthase/transferase
Probab=98.22 E-value=0.003 Score=67.02 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=65.3
Q ss_pred CCCcEEeeccCch---hhcCCCcccceee----ccChhhhhHhhhcCCceeeccccc--hhhhhH-------HHHHhhhc
Q 012594 329 SDRGKLVEWAPQE---KVLGHPSVACFLS----HCGWNSTLEGLSMGVPFLCWPYFA--DQYQNR-------NYIFDAWK 392 (460)
Q Consensus 329 ~~~v~~~~~~p~~---~ll~~~~~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~--dQ~~~a-------~~v~~~lg 392 (460)
++++.+....+.. .+++.+++ |+. =+=..+.+||+++|+|.|+....+ |..... +..... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 4567776544443 47766555 773 333468899999999998865432 221111 000001 4
Q ss_pred ceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012594 393 IGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQ 454 (460)
Q Consensus 393 ~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 454 (460)
-|..+ ...+++.|..+|.++|.+. .+....+++..++.+...-+-.+.++..++-
T Consensus 976 tGflf-----~~~d~~aLa~AL~raL~~~--~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~L 1030 (1036)
T PLN02316 976 NGFSF-----DGADAAGVDYALNRAISAW--YDGRDWFNSLCKRVMEQDWSWNRPALDYMEL 1030 (1036)
T ss_pred ceEEe-----CCCCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 68887 4458899999999999642 2333334444444333344444444444443
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.16 E-value=8e-05 Score=71.73 Aligned_cols=85 Identities=20% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCCcEEeeccCch-hhcCCCcccceeec--cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCcc
Q 012594 329 SDRGKLVEWAPQE-KVLGHPSVACFLSH--CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGII 405 (460)
Q Consensus 329 ~~~v~~~~~~p~~-~ll~~~~~~~~I~h--gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~ 405 (460)
+.++.+.++.++. .++..+++-++.++ |...+++||+++|+|+|+..... .....+.+. ..|..++ .-
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~-----~~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVP-----KG 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeC-----CC
Confidence 4677888876654 58877777444454 33568999999999999974331 234455553 6788884 35
Q ss_pred CHHHHHHHHHHHhcChH
Q 012594 406 TRQEIQRQVKALLNDGG 422 (460)
Q Consensus 406 ~~~~l~~~i~~~l~~~~ 422 (460)
+.++++++|.++++|++
T Consensus 331 d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 331 DIEALAEAIIELLNDPK 347 (372)
T ss_pred cHHHHHHHHHHHHcCHH
Confidence 79999999999999874
No 115
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.06 E-value=0.00011 Score=70.86 Aligned_cols=147 Identities=22% Similarity=0.223 Sum_probs=82.3
Q ss_pred CcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhh--hCCCcEEeeccCchhhcC-CCc
Q 012594 272 GSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVER--VSDRGKLVEWAPQEKVLG-HPS 348 (460)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~ll~-~~~ 348 (460)
..++|.+|.+..+.+++.+..-.+.++..+...+|......... ..+...+.+. .++++.+.++.|+.+.|. +..
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~--~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE--ARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH--HHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH--HHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 44999999999999999999999999989888888875431110 1111111111 246788888888765332 222
Q ss_pred cccee---eccChhhhhHhhhcCCceeeccccch-hhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHH
Q 012594 349 VACFL---SHCGWNSTLEGLSMGVPFLCWPYFAD-QYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIK 424 (460)
Q Consensus 349 ~~~~I---~hgG~~sv~eal~~GvP~i~~P~~~d-Q~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 424 (460)
+++++ ..+|.+|++|||++|||+|.+|-..= ...-+..+.. +|+...+-. +.++-.+..-++-+|.+++
T Consensus 362 ~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~------s~~eYv~~Av~La~D~~~l 434 (468)
T PF13844_consen 362 ADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD------SEEEYVEIAVRLATDPERL 434 (468)
T ss_dssp -SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S------SHHHHHHHHHHHHH-HHHH
T ss_pred CCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC------CHHHHHHHHHHHhCCHHHH
Confidence 33343 56889999999999999999996533 3333445554 788877742 5566555555777787655
Q ss_pred HHH
Q 012594 425 ANA 427 (460)
Q Consensus 425 ~~a 427 (460)
++.
T Consensus 435 ~~l 437 (468)
T PF13844_consen 435 RAL 437 (468)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 116
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.06 E-value=0.00013 Score=71.06 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCCcEEeeccCchh---hcCCCcccceeeccC----hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLSHCG----WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~hgG----~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
..+|.+.+|+++.+ ++...+++++|...- ..+++||+++|+|+|+.. -......+.+. +.|..+.
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~--- 359 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLS--- 359 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeC---
Confidence 45688999999764 554444445765432 568999999999999874 44466677662 5888874
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFV 452 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 452 (460)
..-+.++++++|.++++|++.++ +|++..++.+.+.-+.....+.|+
T Consensus 360 -~~~~~~~la~~I~~ll~~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 360 -KDPTPNELVSSLSKFIDNEEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred -CCCCHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 33478999999999998876443 345555554444566655555554
No 117
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.05 E-value=0.0021 Score=62.49 Aligned_cols=115 Identities=11% Similarity=-0.022 Sum_probs=66.2
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhCCCCE-EEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCc----hhhcCCCc
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESLQQPF-LWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQ----EKVLGHPS 348 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~ll~~~~ 348 (460)
.+++..|.....+.+.+..+++|+..++.++ ++.++... . . ...++...++... ..+++.++
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-----~---~-----~~~~v~~~g~~~~~~~l~~~y~~aD 308 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-----P---F-----TAGNVVNHGFETDKRKLMSALNQMD 308 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-----c---c-----cccceEEecCcCCHHHHHHHHHhCC
Confidence 3444455422223344577888888765543 34444320 0 0 1234555666532 23554455
Q ss_pred ccceee----ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHH
Q 012594 349 VACFLS----HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQV 414 (460)
Q Consensus 349 ~~~~I~----hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i 414 (460)
+ ||. -|-..+++||+++|+|+|+....+ ..+.+.. +-|..++. -+.+.|++.+
T Consensus 309 v--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 309 A--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred E--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 5 654 344578999999999999996654 3333432 67888853 3678888754
No 118
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.03 E-value=1.6e-05 Score=67.31 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=67.6
Q ss_pred CCCcEEeeccCch---hhcCCCcccceeec----cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQE---KVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~~---~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
..++.+.++.++. .++..+++ +|+. |...++.||+++|+|+|+. +-..+...+.+. +.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--
Confidence 4688899999833 47766666 7766 6678999999999999986 566677777774 67999953
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHHHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGIKANALKMK 431 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~ 431 (460)
.+.++++++|.+++++++++++..+=+
T Consensus 143 ---~~~~~l~~~i~~~l~~~~~~~~l~~~~ 169 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDPELRQKLGKNA 169 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 389999999999999886555544433
No 119
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.95 E-value=0.00045 Score=66.69 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCcEEeeccCchh---hcCCCcccceeec----cCh-hhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecC
Q 012594 329 SDRGKLVEWAPQEK---VLGHPSVACFLSH----CGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPD 400 (460)
Q Consensus 329 ~~~v~~~~~~p~~~---ll~~~~~~~~I~h----gG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~ 400 (460)
..++.+.+++|+.+ +++.+++ +|.- .|. .+++||+++|+|+|+... ..+...+.+. ..|..+.
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~-- 326 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLA-- 326 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEe--
Confidence 46788899998654 6877776 6542 343 577999999999999854 3455666653 5677552
Q ss_pred CCCccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012594 401 ENGIITRQEIQRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQL 455 (460)
Q Consensus 401 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 455 (460)
...+.++++++|.++++|++.+ ++++..++...+.-+-...++.+.+.+
T Consensus 327 --~~~d~~~la~~I~~ll~d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l 375 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQI 375 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3347999999999999988643 344444333222444444455554444
No 120
>PRK14099 glycogen synthase; Provisional
Probab=97.91 E-value=0.0069 Score=60.27 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.1
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 3 REPHVLVIPFP------AQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 3 ~~~~Il~~~~~------~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
+.+||++++.- +.|=-...-+|.++|+++||+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 56899998742 4555566778899999999999999884
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.88 E-value=0.007 Score=59.82 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCCcEEeeccCch-hhcCCCcccceee---ccC-hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeec
Q 012594 329 SDRGKLVEWAPQE-KVLGHPSVACFLS---HCG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFP 399 (460)
Q Consensus 329 ~~~v~~~~~~p~~-~ll~~~~~~~~I~---hgG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~ 399 (460)
.++|.+.+|.... .+|..+++ ||. +-| .+++.||+++|+|+|+... ..+...+.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC
Confidence 4788999886543 47877666 764 234 5799999999999998844 4566777764 78888853
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.81 E-value=0.0028 Score=59.62 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=70.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeE-EEEcCCCCCCCCcCcccHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLIT-MVSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 82 (460)
||+++-....|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++...-.. .+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~--------p~vd~v~~~~~~~~~~-----~~-- 65 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH--------PAVDEVIPVALRRWRK-----TL-- 65 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC--------CCccEEEEechhhhhh-----cc--
Confidence 58999999999999999999999987 9999999999998888655 4564 45554210000 00
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEE
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAA 136 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 136 (460)
+. ......+..+.+.++. .++|++|.-........++...+.+.+.
T Consensus 66 -~~---~~~~~~~~~~~~~lr~----~~yD~vi~~~~~~~s~~l~~~~~~~r~g 111 (319)
T TIGR02193 66 -FS---AATWREIKALRALLRA----ERYDAVIDAQGLIKSALVARMARGPRHG 111 (319)
T ss_pred -cc---chhHHHHHHHHHHHhh----ccchhhhhhhhhHHHHHHHHhhCCceec
Confidence 00 0111224445555555 8999998544344455667777744443
No 123
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00042 Score=53.52 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=69.6
Q ss_pred EEEEcCCCcCCCHHHHH--HHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeecc--Cc-hhhcCCCcc
Q 012594 275 IYVAFGSVAVLSQEQLE--ELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWA--PQ-EKVLGHPSV 349 (460)
Q Consensus 275 v~vs~Gs~~~~~~~~~~--~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~-~~ll~~~~~ 349 (460)
+|||-||....-.+.+. ++.+-.+....++|+.+++. ...|- .+ .++.+|. +- +.+-..++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d~kpv------ag-l~v~~F~~~~kiQsli~dar- 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------DIKPV------AG-LRVYGFDKEEKIQSLIHDAR- 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------Ccccc------cc-cEEEeechHHHHHHHhhcce-
Confidence 78999997321112211 12222333445788888765 12220 11 2344443 32 34554444
Q ss_pred cceeeccChhhhhHhhhcCCceeeccccc--------hhhhhHHHHHhhhcceeEee
Q 012594 350 ACFLSHCGWNSTLEGLSMGVPFLCWPYFA--------DQYQNRNYIFDAWKIGLRFF 398 (460)
Q Consensus 350 ~~~I~hgG~~sv~eal~~GvP~i~~P~~~--------dQ~~~a~~v~~~lg~g~~~~ 398 (460)
.+|+|+|.||++.++..++|.|++|-.. .|-..|..+.+ ++.-+...
T Consensus 68 -IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 68 -IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred -EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 5999999999999999999999999754 68888998888 68777774
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.72 E-value=0.042 Score=53.38 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=68.1
Q ss_pred hhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeE-eecCCCCccCHHHHHHHHHHHhcC
Q 012594 342 KVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLR-FFPDENGIITRQEIQRQVKALLND 420 (460)
Q Consensus 342 ~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~-~~~~~~~~~~~~~l~~~i~~~l~~ 420 (460)
.+++++++ +|..= .=+..-|+..|||.+.+++. +.....+.. +|.... ++. ..++.+.|.+.+.++++|
T Consensus 323 ~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y~---~K~~~~~~~-lg~~~~~~~~---~~l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 323 KILGACEL--TVGTR-LHSAIISMNFGTPAIAINYE---HKSAGIMQQ-LGLPEMAIDI---RHLLDGSLQAMVADTLGQ 392 (426)
T ss_pred HHHhhCCE--EEEec-chHHHHHHHcCCCEEEeeeh---HHHHHHHHH-cCCccEEech---hhCCHHHHHHHHHHHHhC
Confidence 57766544 77642 22456688999999999983 334444455 687766 444 778899999999999988
Q ss_pred h-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012594 421 G-GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKA 457 (460)
Q Consensus 421 ~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 457 (460)
. +++++.++--+++++ .....++++++.+-+
T Consensus 393 r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 393 LPALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 5 577766666666664 333466677666543
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.69 E-value=0.0053 Score=54.01 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCCcEEeeccCchh----hcCCCcccceeeccC----hhhhhHhhhcCCceeeccccch
Q 012594 329 SDRGKLVEWAPQEK----VLGHPSVACFLSHCG----WNSTLEGLSMGVPFLCWPYFAD 379 (460)
Q Consensus 329 ~~~v~~~~~~p~~~----ll~~~~~~~~I~hgG----~~sv~eal~~GvP~i~~P~~~d 379 (460)
..|+.+.++++..+ ++..+++ +++-.. .+++.||+++|+|+|+.+....
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 46788888863322 4433555 777766 7899999999999999876543
No 126
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.067 Score=48.80 Aligned_cols=351 Identities=13% Similarity=0.104 Sum_probs=178.9
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc--hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 2 DREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM--HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 2 ~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
.++.|++++..|--||-=++.-=|..|++.|.+|.+++.... .+.+-+. ++++++.++.-..-.. ...-
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h--------prI~ih~m~~l~~~~~-~p~~ 80 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH--------PRIRIHGMPNLPFLQG-GPRV 80 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC--------CceEEEeCCCCcccCC-Cchh
Confidence 456799999999999999999999999999999999975443 3334334 5899999985332111 1111
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCC-CcchHHHHH----HHhCCceEEEcccchHHHHHHHhhhhH
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADL-TVGWALEVA----EQMGIARAAVIPYAPASLALVLHAPKL 154 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~-~~~~~~~~A----~~lgiP~v~~~~~~~~~~~~~~~~~~~ 154 (460)
+...++.+... -..+..++.. .++|.++.-. -......+| .-.|...++=++...+....-..
T Consensus 81 ~~l~lKvf~Qf-l~Ll~aL~~~-------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~---- 148 (444)
T KOG2941|consen 81 LFLPLKVFWQF-LSLLWALFVL-------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLK---- 148 (444)
T ss_pred hhhHHHHHHHH-HHHHHHHHhc-------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhh----
Confidence 11112222211 1223344443 7899887653 222333333 33477788777776664111000
Q ss_pred hhhcCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCcchhHHH-HHHHHH-Hhhcc-cccEEEEccccccCccccc
Q 012594 155 VEAGLLDSNGNAMTDEPILLSEGTLPWKKKEYGWCFPSQPHMQKLFF-GACSAV-AQNLK-ISNWILCNSFYELDPPACD 231 (460)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~-~~~~~l~~~~~~le~~~~~ 231 (460)
.+ ...++ +...+....+........... +.+++. .++.. ....++..-.|+-+ .+
T Consensus 149 --~g---------~~h~l--------V~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~---~~ 206 (444)
T KOG2941|consen 149 --LG---------FQHPL--------VRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKP---TP 206 (444)
T ss_pred --cC---------CCCch--------HHHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCCCC---Cc
Confidence 00 00000 000000001111111111111 111110 01111 12333443333300 11
Q ss_pred cCC---CeeeeCccCCCCCccCccCCCCCCCCchhhhh--------ccCCCCcEEEEEcCCCcCCCHHHHHHHHHHHHhC
Q 012594 232 LIP---NILTIGPLLGRDHLEHSAVNFWPEDSTCLGWL--------DKQAVGSVIYVAFGSVAVLSQEQLEELALGLESL 300 (460)
Q Consensus 232 ~~p---~~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~ 300 (460)
... .+.-+|..+++-..+..+ ....+-..|. ...+++|.++||.-| .-+.+.+..+++|+..-
T Consensus 207 l~~~H~lf~~l~~d~~~f~ar~~q----~~~~~~taf~~k~~s~~v~~~~~~pallvsSTs--wTpDEdf~ILL~AL~~y 280 (444)
T KOG2941|consen 207 LDEQHELFMKLAGDHSPFRAREPQ----DKALERTAFTKKDASGDVQLLPERPALLVSSTS--WTPDEDFGILLEALVIY 280 (444)
T ss_pred hhHHHHHHhhhccccchhhhcccc----cchhhhhhHhhhcccchhhhccCCCeEEEecCC--CCCcccHHHHHHHHHhh
Confidence 100 122233332221111000 0111111121 223457788887544 44667788888888622
Q ss_pred ---------C-CCEEEEEcCCCCccccCCCchhHHhhhC----CCcEEe-eccC---chhhcCCCcccceeeccChh---
Q 012594 301 ---------Q-QPFLWVVRPDFMNKSHAKLPDGFVERVS----DRGKLV-EWAP---QEKVLGHPSVACFLSHCGWN--- 359 (460)
Q Consensus 301 ---------~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~-~~~p---~~~ll~~~~~~~~I~hgG~~--- 359 (460)
+ .++++++++. +++.+.+.+... .+|.+. .|+. +-.+|+.++.+.++|-..+|
T Consensus 281 ~~~~~~~~~~lP~llciITGK------GPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDL 354 (444)
T KOG2941|consen 281 EEQLYDKTHNLPSLLCIITGK------GPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDL 354 (444)
T ss_pred hhhhhhccCCCCcEEEEEcCC------CchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCc
Confidence 1 2456665544 344444433322 455544 8875 44599999999999887766
Q ss_pred --hhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhc
Q 012594 360 --STLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLN 419 (460)
Q Consensus 360 --sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~ 419 (460)
-|..-.-+|+|++.+-+.- .-+.|.+. .-|+.+. ++++|++.++-++.
T Consensus 355 PMKVVDMFGcglPvcA~~fkc----l~ELVkh~-eNGlvF~-------Ds~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 355 PMKVVDMFGCGLPVCAVNFKC----LDELVKHG-ENGLVFE-------DSEELAEQLQMLFK 404 (444)
T ss_pred chhHHHhhcCCCceeeecchh----HHHHHhcC-CCceEec-------cHHHHHHHHHHHHh
Confidence 4667788999999885542 23445553 5677763 68999999999987
No 127
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.49 E-value=0.00038 Score=65.80 Aligned_cols=109 Identities=14% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCcEEeeccCchhh---cCCCcccceeec-------cC------hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhc
Q 012594 329 SDRGKLVEWAPQEKV---LGHPSVACFLSH-------CG------WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK 392 (460)
Q Consensus 329 ~~~v~~~~~~p~~~l---l~~~~~~~~I~h-------gG------~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg 392 (460)
.+||.+.+|+|+.++ |.. +..++... +. .+-+.+.+++|+|+|+. ++...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-C
Confidence 578999999999875 433 32222211 11 12367889999999986 567788899985 9
Q ss_pred ceeEeecCCCCccCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012594 393 IGLRFFPDENGIITRQEIQRQVKALLNDG--GIKANALKMKQMARKSLVEGGSSFRNFESFVSQ 454 (460)
Q Consensus 393 ~g~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 454 (460)
+|..++ +.+++.+++.++..++ .|++|++++++++++ |.-..+++++++..
T Consensus 280 ~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 280 LGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred ceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 999993 4678999998865322 589999999999997 77777777777653
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.14 E-value=0.0075 Score=48.78 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=65.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
||++++.....| ...+++.|.++||+|++++.....+..... .++.++.++.... . ....+.
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~~k-----~--~~~~~~ 62 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSPRK-----S--PLNYIK 62 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCCCC-----c--cHHHHH
Confidence 577777655555 568899999999999999996554333322 3888888853311 1 111111
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc---hHHHHHHHhC-CceEEEccc
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG---WALEVAEQMG-IARAAVIPY 140 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~---~~~~~A~~lg-iP~v~~~~~ 140 (460)
+ . .+..+++. .+||+|.+..... .+..++...+ +|+|.....
T Consensus 63 -~----~-~l~k~ik~-------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 63 -Y----F-RLRKIIKK-------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred -H----H-HHHHHhcc-------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 1 1 23444554 8999998776543 2344567778 999965443
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.10 E-value=0.2 Score=45.18 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=72.8
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEeCcc--chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHH-HHHHHHHh
Q 012594 13 PAQGHAGPLMKLSTKIAEHGIKVTFVSTEH--MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLH-KVRQSMLT 89 (460)
Q Consensus 13 ~~~gH~~p~~~La~~L~~rGh~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~ 89 (460)
+-.-|+.-+..|.++|.++||+|.+-+-+. ..+.+... |+++..+...-.. .+. .+....
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~g~~------tl~~Kl~~~~-- 70 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKHGGV------TLKEKLLESA-- 70 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecccCCc------cHHHHHHHHH--
Confidence 455688889999999999999999987654 34555555 8888888743211 111 111111
Q ss_pred hchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchH
Q 012594 90 VMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPA 143 (460)
Q Consensus 90 ~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 143 (460)
.....+.+.+.+ ++||+.+. -..+.+..+|-.+|+|.|.+....-.
T Consensus 71 ---eR~~~L~ki~~~----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 71 ---ERVYKLSKIIAE----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred ---HHHHHHHHHHhh----cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 223333344444 99999999 45778999999999999998766543
No 130
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.10 E-value=0.0016 Score=52.37 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCCcEEeeccCch-hhcCCCcccceeec---cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCc
Q 012594 329 SDRGKLVEWAPQE-KVLGHPSVACFLSH---CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGI 404 (460)
Q Consensus 329 ~~~v~~~~~~p~~-~ll~~~~~~~~I~h---gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~ 404 (460)
.+|+++.+|++.. ++++.+++-+..+. |-.+++.|++++|+|+|+.+.. ....++. .+.|..+.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~~------ 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLVA------ 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T------
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEEC------
Confidence 4689999998643 47877777444332 2358999999999999998662 2223333 37777762
Q ss_pred cCHHHHHHHHHHHhcC
Q 012594 405 ITRQEIQRQVKALLND 420 (460)
Q Consensus 405 ~~~~~l~~~i~~~l~~ 420 (460)
-+++++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 2799999999999875
No 131
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.06 E-value=0.14 Score=48.76 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=72.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeEEE-EcCCCCCCCCcCcccHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLITMV-SIPDGLESHEADRRDLH 81 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~ 81 (460)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++-+ .++.. . ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~~----~----~~~ 64 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPLG----H----GAL 64 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecccc----c----chh
Confidence 379999999999999999999999985 8999999998888888665 455432 22211 0 000
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEE
Q 012594 82 KVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAA 136 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 136 (460)
. + ....++++.++. .++|++|.=....-+..++...|+|.-.
T Consensus 65 ~----~-----~~~~~l~~~lr~----~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 65 E----I-----GERRRLGHSLRE----KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred h----h-----HHHHHHHHHHHh----cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 0 113345566666 8999999655455666777777887664
No 132
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.95 E-value=0.14 Score=48.74 Aligned_cols=109 Identities=10% Similarity=0.116 Sum_probs=74.4
Q ss_pred CCC-CCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeE-EEEcCCCCCCCCcC
Q 012594 1 MDR-EPHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLIT-MVSIPDGLESHEAD 76 (460)
Q Consensus 1 m~~-~~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 76 (460)
|.+ .+||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++... .
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~~--~--- 67 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNKK--A--- 67 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEecccc--c---
Confidence 655 4689999999999999999999999987 8999999999988877654 3553 23333210 0
Q ss_pred cccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEE
Q 012594 77 RRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAA 136 (460)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 136 (460)
... ..+ .....+++.++. .++|++|.-........++...|.|...
T Consensus 68 --~~~---~~~-----~~~~~l~~~lr~----~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 68 --GAS---EKI-----KNFFSLIKVLRA----NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --cHH---HHH-----HHHHHHHHHHhh----CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 000 000 123345566666 8999999654444556667777887754
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.84 E-value=0.0084 Score=58.55 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=89.2
Q ss_pred CCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHh------hhCCCcEEeeccCchh--
Q 012594 271 VGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVE------RVSDRGKLVEWAPQEK-- 342 (460)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~-- 342 (460)
+.-+||++|--....+++.++.-++.++..+-.++|.......++ .+|.. -.|++|.+.+-+...+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 345999999888888999999999999989989999987552221 11111 1256677766555433
Q ss_pred ---hcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhc
Q 012594 343 ---VLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLN 419 (460)
Q Consensus 343 ---ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~ 419 (460)
.|..-.++-..+. |..|.++.|++|+|||.+|...--...|.-+.-++|+|-.+.+ +.++-.+.--++-.
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak------~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK------NREEYVQIAVRLAT 903 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh------hHHHHHHHHHHhhc
Confidence 2322223335555 7889999999999999999865444444322223799887643 44444333334444
Q ss_pred ChHH
Q 012594 420 DGGI 423 (460)
Q Consensus 420 ~~~~ 423 (460)
|.+|
T Consensus 904 d~~~ 907 (966)
T KOG4626|consen 904 DKEY 907 (966)
T ss_pred CHHH
Confidence 5444
No 134
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.71 E-value=0.18 Score=46.35 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=68.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCccchhHHhhccCccccCCCCeEE-EEcCCCCCCCCcCcccHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHG--IKVTFVSTEHMHAKITASMPQKAEQSSLITM-VSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 82 (460)
||+++-..+.|++.-+.++.++|+++. -+|++++.+.+.+.++.. +.++- +.++... ....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~~-----~~~~--- 64 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKKH-----GKLG--- 64 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCcc-----cccc---
Confidence 589999999999999999999999874 899999999888877655 34432 3333211 0000
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceE
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARA 135 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v 135 (460)
.....+++..++. .++|+++--........++...+++..
T Consensus 65 ---------~~~~~~~~~~l~~----~~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 65 ---------LGARRRLARALRR----RRYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred ---------hHHHHHHHHHHhh----cCCCEEEECCCccHHHHHHHHhCCCeE
Confidence 1223455556666 889999966555544455666666554
No 135
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.68 E-value=0.081 Score=50.28 Aligned_cols=105 Identities=8% Similarity=0.072 Sum_probs=72.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeE-EEEcCCCCCCCCcCcccHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLIT-MVSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 82 (460)
||+++-....|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++..... ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~~-----~~~-- 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKAK-----AGE-- 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhhc-----chH--
Confidence 58999999999999999999999986 8999999999988877665 4554 3444321100 000
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEE
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAA 136 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 136 (460)
..+. ...+++..++. .++|++|.-.....+..++...|.|.-+
T Consensus 66 --~~~~-----~~~~l~~~lr~----~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 --RKLA-----NQFHLIKVLRA----NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred --HHHH-----HHHHHHHHHHh----CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0110 12344556666 8999999655455677788888998754
No 136
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.63 E-value=0.16 Score=47.98 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=70.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeEE-EEcCCCCCCCCcCcccHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLITM-VSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 82 (460)
||+|+-..+.|++.-..++.+.|++. +.+|++++.+.+.+.++.. +.++- +.++.. . ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~----~-~~~~--- 64 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPLG----H-GALE--- 64 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCCc----c-cchh---
Confidence 68999999999999999999999986 8999999998887777655 34432 222211 0 0000
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceE
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARA 135 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v 135 (460)
+ ....++++.++. .++|++|.-.....+..++...|+|.-
T Consensus 65 ----~-----~~~~~~~~~lr~----~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 65 ----L-----TERRRLGRSLRE----ERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred ----h-----hHHHHHHHHHhh----cCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 0 112345556666 899999976655566667777788765
No 137
>PHA01633 putative glycosyl transferase group 1
Probab=96.56 E-value=0.034 Score=52.06 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=54.1
Q ss_pred CCCcEEee---ccCch---hhcCCCcccceeec----cChhhhhHhhhcCCceeecccc------chh------hhhHHH
Q 012594 329 SDRGKLVE---WAPQE---KVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYF------ADQ------YQNRNY 386 (460)
Q Consensus 329 ~~~v~~~~---~~p~~---~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~------~dQ------~~~a~~ 386 (460)
++++.+.+ ++++. ++++.+++ +|.- |-..+++||+++|+|+|+.-.. .|+ .+...-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 56788874 45544 46766665 6652 3356889999999999987332 222 222222
Q ss_pred HH--hhhcceeEeecCCCCccCHHHHHHHHHHHhcC
Q 012594 387 IF--DAWKIGLRFFPDENGIITRQEIQRQVKALLND 420 (460)
Q Consensus 387 v~--~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 420 (460)
.. + .|.|..+ ...++++++++|.+++..
T Consensus 278 ~~~~~-~g~g~~~-----~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKE-HGQKWKI-----HKFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcc-cCceeee-----cCCCHHHHHHHHHHHHhc
Confidence 22 2 2666666 457999999999999543
No 138
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.031 Score=54.49 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=73.9
Q ss_pred CCCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhh------hCCCcEEeeccCchhh
Q 012594 270 AVGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVER------VSDRGKLVEWAPQEKV 343 (460)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~l 343 (460)
+++-+||++++...+..++.+..-++.++..+..++|..+++.+ ..+-..+.+. .+++.++.+-.|..+.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~----~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD----AEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc----HHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 34569999999999999999999999999999999999886421 1222222211 2467778777776653
Q ss_pred c---CCCccccee---eccChhhhhHhhhcCCceeeccc
Q 012594 344 L---GHPSVACFL---SHCGWNSTLEGLSMGVPFLCWPY 376 (460)
Q Consensus 344 l---~~~~~~~~I---~hgG~~sv~eal~~GvP~i~~P~ 376 (460)
+ ..+++ |+ .-||..|..|+|..|||||..+-
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~G 539 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRVG 539 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeecc
Confidence 3 23333 55 57999999999999999999863
No 139
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.54 E-value=0.33 Score=45.60 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=66.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeE-EEEcCCCCCCCCcCcccHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLIT-MVSIPDGLESHEADRRDLH 81 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~ 81 (460)
|||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++.. . ..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~----~-----~~ 63 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH--------PAVDRVIPVAIR----R-----WR 63 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC--------CCccEEEeechh----H-----hh
Confidence 489999999999999999999999986 8999999998887766544 3444 3333311 0 00
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHh
Q 012594 82 KVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQM 130 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~l 130 (460)
. ..+.........+++..++. .++|++|.-.....+..++..+
T Consensus 64 ~--~~~~~~~~~~~~~~~~~lr~----~~yD~vidl~~~~~s~~l~~~~ 106 (322)
T PRK10964 64 K--AWFSAPIRAERKAFREALQA----EQYDAVIDAQGLVKSAALVTRL 106 (322)
T ss_pred h--cccchhHHHHHHHHHHHHhc----cCCCEEEEccchHHHHHHHHHh
Confidence 0 00000111234566777777 8999998543333444444444
No 140
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.15 Score=48.20 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=75.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (460)
+||+++-....|++.-..++-..|+++ +.++++++.+.+.+.++.. +.++-+.+... .. . +
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~--~~---~-~--- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDK--KK---K-G--- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccccc--cc---c-c---
Confidence 489999999999999999999999988 4999999999998877655 34443221110 00 0 0
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEE
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAV 137 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 137 (460)
.-......+.+.+++ .++|+||.=....-...++...++|.-.-
T Consensus 65 -------~~~~~~~~l~~~lr~----~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 -------LGLKERLALLRTLRK----ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred -------cchHHHHHHHHHhhc----cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 112335566666776 88999997766667777777888887753
No 141
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.39 E-value=0.015 Score=47.99 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHH
Q 012594 20 PLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLI 99 (460)
Q Consensus 20 p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (460)
-+..|+++|.++||+|++++.......-+.. ..++.++.++-...... . .....+ ..+.+++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~-~~~~~~--------~~~~~~l 67 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRPWP--L-RLLRFL--------RRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SSSG--G-GHCCHH--------HHHHHHC
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccchh--h-hhHHHH--------HHHHHHH
Confidence 4678999999999999999976544422111 13788877763222111 0 000111 1223333
Q ss_pred HHHhhcCCCCCccEEEeCCCcc-hHHHHHH-HhCCceEEEccc
Q 012594 100 EKVNKSNDCEKISCVIADLTVG-WALEVAE-QMGIARAAVIPY 140 (460)
Q Consensus 100 ~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~-~lgiP~v~~~~~ 140 (460)
.... .+||+|.+..... ....+++ ..++|+|.....
T Consensus 68 -~~~~----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 68 -AARR----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp -HHCT-------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred -hhhc----cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 1133 8999999887433 3334444 789999986653
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.36 E-value=0.038 Score=40.95 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=54.0
Q ss_pred ccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhc-ceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 012594 355 HCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWK-IGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALKMKQM 433 (460)
Q Consensus 355 hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg-~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~ 433 (460)
+|-..-+.|++++|+|+|.-+. ......+.+ | -++.. . +.+++.++|..+++|++.+++..+-+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4555688999999999998854 444444432 4 33333 2 8999999999999999655444443333
Q ss_pred HHHHhhcCCChHHHHHHHH
Q 012594 434 ARKSLVEGGSSFRNFESFV 452 (460)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~ 452 (460)
.-. +..+....+++|+
T Consensus 76 ~v~---~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVL---KRHTWEHRAEQIL 91 (92)
T ss_pred HHH---HhCCHHHHHHHHH
Confidence 332 2666666666665
No 143
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.28 E-value=0.0061 Score=45.44 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCCchhhhhccCCCCcEEEEEcCCCcCC---CH--HHHHHHHHHHHhCCCCEEEEEcCC
Q 012594 258 EDSTCLGWLDKQAVGSVIYVAFGSVAVL---SQ--EQLEELALGLESLQQPFLWVVRPD 311 (460)
Q Consensus 258 ~~~~l~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~ 311 (460)
....+.+|+...+.+|.|++|+||.... .. ..+..++++++.++..+|..+...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 4455668999989999999999998543 22 478899999999999999998755
No 144
>PRK14098 glycogen synthase; Provisional
Probab=96.28 E-value=0.052 Score=54.18 Aligned_cols=132 Identities=13% Similarity=0.027 Sum_probs=73.0
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHH---hCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCch---hhcCCC
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLE---SLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQE---KVLGHP 347 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~ll~~~ 347 (460)
+++...|.... .+.+..+++++. ..+.+++++-.+... ....+ ..+.++.+.++.+.++.+.. .+++.+
T Consensus 308 ~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lvivG~G~~~--~~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~a~a 382 (489)
T PRK14098 308 PLVGVIINFDD--FQGAELLAESLEKLVELDIQLVICGSGDKE--YEKRF-QDFAEEHPEQVSVQTEFTDAFFHLAIAGL 382 (489)
T ss_pred CEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEEeCCCHH--HHHHH-HHHHHHCCCCEEEEEecCHHHHHHHHHhC
Confidence 56666776532 233444444443 335555554332200 00011 12222346788888888764 477666
Q ss_pred cccceeecc---Ch-hhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHh
Q 012594 348 SVACFLSHC---GW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALL 418 (460)
Q Consensus 348 ~~~~~I~hg---G~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l 418 (460)
++ ++.-. |. .+.+||+++|+|.|+....+-.........+. +.|..++ ..+++.++++|.+++
T Consensus 383 Di--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~-----~~d~~~la~ai~~~l 449 (489)
T PRK14098 383 DM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFH-----DYTPEALVAKLGEAL 449 (489)
T ss_pred CE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeC-----CCCHHHHHHHHHHHH
Confidence 66 66422 22 47789999999988876532111110111123 6788873 357899999999876
No 145
>PHA01630 putative group 1 glycosyl transferase
Probab=96.23 E-value=0.18 Score=47.59 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=61.0
Q ss_pred eccCchh---hcCCCccccee--ec-cC-hhhhhHhhhcCCceeeccccchhhhhHHHHHhh------------------
Q 012594 336 EWAPQEK---VLGHPSVACFL--SH-CG-WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDA------------------ 390 (460)
Q Consensus 336 ~~~p~~~---ll~~~~~~~~I--~h-gG-~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~------------------ 390 (460)
.++|+.+ ++..+++ ++ +. .| ..++.||+++|+|+|+.-..+ +...+.+.
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg----~~E~i~~~~ng~lv~~~~~~~~~~~~ 269 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGA----WSEWVLSNLDVYWIKSGRKPKLWYTN 269 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCC----chhhccCCCceEEeeecccccccccC
Confidence 3466554 6766666 55 33 22 568899999999999985432 22222221
Q ss_pred -hcceeEeecCCCCccCHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 391 -WKIGLRFFPDENGIITRQEIQRQVKALLND---GGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 391 -lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
-++|..+. .+.+++.+++.++|.| ++++++.+.-+....+ .-+-.+.++.+.+-+.
T Consensus 270 ~~~~G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 270 PIHVGYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILE 329 (331)
T ss_pred CcccccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Confidence 02344442 2577888888888877 4555555554444443 3455555555555443
No 146
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.85 E-value=0.075 Score=44.24 Aligned_cols=96 Identities=8% Similarity=0.042 Sum_probs=57.5
Q ss_pred hCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCC
Q 012594 30 EHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCE 109 (460)
Q Consensus 30 ~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 109 (460)
++||+|++++........ . |++...+........ ...-....++...... ..+...+..|++.. +
T Consensus 1 q~gh~v~fl~~~~~~~~~--~---------GV~~~~y~~~~~~~~-~~~~~~~~~e~~~~rg-~av~~a~~~L~~~G--f 65 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--P---------GVRVVRYRPPRGPTP-GTHPYVRDFEAAVLRG-QAVARAARQLRAQG--F 65 (171)
T ss_pred CCCCEEEEEecCCCCCCC--C---------CcEEEEeCCCCCCCC-CCCcccccHHHHHHHH-HHHHHHHHHHHHcC--C
Confidence 579999999964444322 2 677766654222221 1111111122222221 23455555666666 9
Q ss_pred CccEEEeCCCcchHHHHHHHh-CCceEEEccc
Q 012594 110 KISCVIADLTVGWALEVAEQM-GIARAAVIPY 140 (460)
Q Consensus 110 ~~D~vv~D~~~~~~~~~A~~l-giP~v~~~~~ 140 (460)
.||+|++....-.+..+-+.+ +.|.+.+.-.
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 999999998666778888888 9999986644
No 147
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.74 E-value=1.1 Score=41.74 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=39.0
Q ss_pred cCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhh----hHHHHHhhhcceeEee
Q 012594 338 APQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQ----NRNYIFDAWKIGLRFF 398 (460)
Q Consensus 338 ~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~----~a~~v~~~lg~g~~~~ 398 (460)
=|+..+|+.++. .+||--..+-+.||+..|+|+.++|... +.. ..+.+.+ .|+-..+.
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECC
Confidence 366678877665 3455545577799999999999999876 222 2344555 37766664
No 148
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.21 E-value=0.16 Score=47.14 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.2
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
|++|+.+ |+-|-..-..++|..++++|++|.++++++.+...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~ 44 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLS 44 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHH
Confidence 5666665 89999999999999999999999999999876543
No 149
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.07 E-value=0.1 Score=44.71 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=30.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
||||+..=-+. +---+..|+++|.+.||+|+++.+...+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 46777664333 3445778999998788999999998876655
No 150
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.52 E-value=0.27 Score=41.09 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhch
Q 012594 13 PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMP 92 (460)
Q Consensus 13 ~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
...|=-.-+..|+++|+++||+|++++........... ............. ... ..+. ..
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~~~---~~~~--~~ 69 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEEL---------VKIFVKIPYPIRK------RFL---RSFF--FM 69 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTE---------EEE---TT-SSTS------S-----HHHH--HH
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhc---------cceeeeeeccccc------ccc---hhHH--HH
Confidence 35667777899999999999999999875443322110 1111111111110 111 1110 11
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEcccch
Q 012594 93 GCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (460)
..+..+++. .+||+|.+..... +....+-. ++|.+.......
T Consensus 70 ~~~~~~i~~-------~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 70 RRLRRLIKK-------EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHHHH-------HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHHHH-------cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 234555555 7899996555333 33333333 999998776655
No 151
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.42 E-value=0.26 Score=41.22 Aligned_cols=117 Identities=12% Similarity=0.171 Sum_probs=61.2
Q ss_pred EcCCCccChHHHHHHHHHH-HhC-CCEEEEEeCccch--hHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 10 IPFPAQGHAGPLMKLSTKI-AEH-GIKVTFVSTEHMH--AKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 10 ~~~~~~gH~~p~~~La~~L-~~r-Gh~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
+..++.||..-++.|.+.+ .++ .++..+++..... +.+++.-.. .....++..++......+....++...+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~---~~~~~~~~~~~r~r~v~q~~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS---SSKRHKILEIPRAREVGQSYLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh---ccccceeeccceEEEechhhHhhHHHHHH
Confidence 3448999999999999999 333 4666666655432 222211000 00011344454322211101111111111
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHh------CCceEEEcccc
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQM------GIARAAVIPYA 141 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~l------giP~v~~~~~~ 141 (460)
.+ ...+..+.. .+||+||+..... ..+.+|..+ |.+.|++-+..
T Consensus 80 ~~--------~~~~~il~r----~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AF--------LQSLRILRR----ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HH--------HHHHHHHHH----hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 11 112222233 6899999998555 556678888 99999765443
No 152
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=94.22 E-value=4.7 Score=37.52 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=34.2
Q ss_pred hCCCcEEeeccCchh---hcCCCcccceeeccC----hhhhhHhhhcCCceeec
Q 012594 328 VSDRGKLVEWAPQEK---VLGHPSVACFLSHCG----WNSTLEGLSMGVPFLCW 374 (460)
Q Consensus 328 ~~~~v~~~~~~p~~~---ll~~~~~~~~I~hgG----~~sv~eal~~GvP~i~~ 374 (460)
..+++.+++-+|+++ +|...++ |++-.= .-++.||..||.|+|..
T Consensus 250 l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 250 LQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred ccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 458899999999875 6766666 665432 34679999999999876
No 153
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.08 E-value=0.71 Score=42.92 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=36.8
Q ss_pred CEEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 5 PHVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 5 ~~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
+||+|+++ |+-|-..-..++|-.|++.|+.|.++++++.+..-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchH
Confidence 48988887 78899888899999999999999999998866544
No 154
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.52 E-value=0.36 Score=47.64 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=69.0
Q ss_pred eeccCchh---hcCCCcccceee---ccCh-hhhhHhhhcCCc----eeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 335 VEWAPQEK---VLGHPSVACFLS---HCGW-NSTLEGLSMGVP----FLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 335 ~~~~p~~~---ll~~~~~~~~I~---hgG~-~sv~eal~~GvP----~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
.+.+++.+ ++..+++ ++. +=|+ .++.||+++|+| +|+--..+ .+.. ++-|+.++
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~----l~~gllVn----- 405 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQE----LNGALLVN----- 405 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHH----hCCcEEEC-----
Confidence 35667765 5666666 664 3355 577899999999 66654332 2222 34467774
Q ss_pred ccCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 404 IITRQEIQRQVKALLNDG--GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
..+.+.++++|.++|+.+ +-+++.+++.+.+.+ .+...-+++|++.|.
T Consensus 406 P~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 406 PYDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 357999999999999854 466666677776653 577777888887764
No 155
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=93.51 E-value=0.55 Score=40.34 Aligned_cols=106 Identities=14% Similarity=0.242 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEEeCc---cchhHHhhccCccccCCCCeEEEEcC-CCCCCCC
Q 012594 1 MDREPHVLVIPFP--AQGHAGPLMKLSTKIAEHGIKVTFVSTE---HMHAKITASMPQKAEQSSLITMVSIP-DGLESHE 74 (460)
Q Consensus 1 m~~~~~Il~~~~~--~~gH~~p~~~La~~L~~rGh~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 74 (460)
|+ +|+++++| +-|...-.-.|+-.|+++|+.|.++-.+ +|.+.+-..- +--=++++.+- +...-..
T Consensus 1 M~---~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE-----~RiVYd~vdVi~g~~~l~Q 72 (272)
T COG2894 1 MA---RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLE-----NRIVYDLVDVIEGEATLNQ 72 (272)
T ss_pred Cc---eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhccc-----ceeeeeehhhhcCccchhh
Confidence 66 78888875 8899999999999999999999999766 4666664330 00012333222 1111111
Q ss_pred c-----CcccHHHH--H--HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCC
Q 012594 75 A-----DRRDLHKV--R--QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADL 118 (460)
Q Consensus 75 ~-----~~~~~~~~--~--~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~ 118 (460)
. ...+++-+ . +.--....+.++.+++++++ ..+|.||+|.
T Consensus 73 ALIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~----~~fDyIi~Ds 121 (272)
T COG2894 73 ALIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKA----MDFDYIIIDS 121 (272)
T ss_pred HhhccccCCceEecccccccCcccCCHHHHHHHHHHHHh----cCCCEEEecC
Confidence 0 01111100 0 00001235678899999988 7899999995
No 156
>PLN02939 transferase, transferring glycosyl groups
Probab=93.50 E-value=2 Score=45.80 Aligned_cols=90 Identities=10% Similarity=0.121 Sum_probs=56.6
Q ss_pred CCCcEEeeccCch---hhcCCCcccceeec----cChhhhhHhhhcCCceeeccccc--hhhhh--HHHH-HhhhcceeE
Q 012594 329 SDRGKLVEWAPQE---KVLGHPSVACFLSH----CGWNSTLEGLSMGVPFLCWPYFA--DQYQN--RNYI-FDAWKIGLR 396 (460)
Q Consensus 329 ~~~v~~~~~~p~~---~ll~~~~~~~~I~h----gG~~sv~eal~~GvP~i~~P~~~--dQ~~~--a~~v-~~~lg~g~~ 396 (460)
.++|.+.++.+.. .+++.+++ ||.- +-..+++||+++|+|.|+....+ |-... ...+ .+. +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 4678888877764 47866666 7642 23458899999999999876543 21111 0001 121 56777
Q ss_pred eecCCCCccCHHHHHHHHHHHhc----ChHHHHH
Q 012594 397 FFPDENGIITRQEIQRQVKALLN----DGGIKAN 426 (460)
Q Consensus 397 ~~~~~~~~~~~~~l~~~i~~~l~----~~~~~~~ 426 (460)
+. ..+++.+.++|.+++. |++.+++
T Consensus 913 f~-----~~D~eaLa~AL~rAL~~~~~dpe~~~~ 941 (977)
T PLN02939 913 FL-----TPDEQGLNSALERAFNYYKRKPEVWKQ 941 (977)
T ss_pred ec-----CCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 74 3478889999988774 5554433
No 157
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=93.40 E-value=0.96 Score=40.81 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=32.5
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 7 VLVIP-FPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 7 Il~~~-~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
+++++ -|+.|...-..++|..++++|++|.++..+..+
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 45444 589999999999999999999999999988754
No 158
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.32 E-value=1.3 Score=43.41 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=80.9
Q ss_pred CcEEEEEcCCCcCCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCccccCCCchhHH--hhhCCCcEEe-eccC-c-hhhcC
Q 012594 272 GSVIYVAFGSVAVLSQEQLEELALGLESLQ-QPFLWVVRPDFMNKSHAKLPDGFV--ERVSDRGKLV-EWAP-Q-EKVLG 345 (460)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~-~~~p-~-~~ll~ 345 (460)
..++++| +...++.+....++++ ..+-+...+.. ...+. ++. +|+.+. ++.+ . .+++.
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--------s~kL~~L~~y-~nvvly~~~~~~~l~~ly~ 346 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--------SSKLMSLDKY-DNVKLYPNITTQKIQELYQ 346 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--------cHHHHHHHhc-CCcEEECCcChHHHHHHHH
Confidence 3477776 2555666666555544 44443333221 12221 233 677655 7777 3 36999
Q ss_pred CCcccceeeccC--hhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChH-
Q 012594 346 HPSVACFLSHCG--WNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGG- 422 (460)
Q Consensus 346 ~~~~~~~I~hgG--~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~- 422 (460)
.+++-+-|+||+ ..++.||+.+|+|++..=..... ..+.. . |-.+. .-+.+++.++|.++|++++
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~----~~~i~--~-g~l~~-----~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN----RDFIA--S-ENIFE-----HNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC----ccccc--C-Cceec-----CCCHHHHHHHHHHHhcCHHH
Confidence 999988999977 47999999999999998433221 11111 1 44553 3468999999999999985
Q ss_pred HHHHHHH
Q 012594 423 IKANALK 429 (460)
Q Consensus 423 ~~~~a~~ 429 (460)
+++++.+
T Consensus 415 ~~~~~~~ 421 (438)
T TIGR02919 415 FRELLEQ 421 (438)
T ss_pred HHHHHHH
Confidence 4444333
No 159
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.06 E-value=1.3 Score=34.61 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=33.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
||++.+.++-.|.....-++..|.++|++|.++...-
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~ 37 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDV 37 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5889999999999999999999999999998886543
No 160
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.82 E-value=1.6 Score=38.99 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCccCh-HHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCC-CCCCCcCcccH
Q 012594 3 REPHVLVIPFPAQGHA-GPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDG-LESHEADRRDL 80 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~-~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~ 80 (460)
++||||+..= -|-. --+..|+++|.+.| +|+++.+...+....... .....+++..+... -.........+
T Consensus 4 ~~M~ILltND--DGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~y~v~GTP 76 (257)
T PRK13932 4 KKPHILVCND--DGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM----TLGVPLRIKEYQKNNRFFGYTVSGTP 76 (257)
T ss_pred CCCEEEEECC--CCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc----cCCCCeEEEEEccCCCceEEEEcCcH
Confidence 4678887663 2222 34678899998888 799999887665443221 11224555544311 00000011111
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCC----------Ccc---hHHHHHHHhCCceEEEccc
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADL----------TVG---WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~----------~~~---~~~~~A~~lgiP~v~~~~~ 140 (460)
.. ++.--+..+.. .+||+||+-. +++ .++.-|..+|||.|.+|..
T Consensus 77 aD-----------CV~lal~~~~~----~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 77 VD-----------CIKVALSHILP----EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred HH-----------HHHHHHHhhcC----CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 11 11111222223 5799999642 223 4555677889999998853
No 161
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.01 E-value=1 Score=40.48 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=53.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh-HHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA-KITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
||+++..-+. -..|++.|.++||+|+..+...... .+.+.+ +..++ .+.+.
T Consensus 2 ~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g--------~~~v~--~g~l~------------- 53 (256)
T TIGR00715 2 TVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ--------ALTVH--TGALD------------- 53 (256)
T ss_pred eEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccccC--------CceEE--ECCCC-------------
Confidence 6766653232 5789999999999999887766543 222220 11211 11110
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchH-------HHHHHHhCCceEEEc
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA-------LEVAEQMGIARAAVI 138 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~-------~~~A~~lgiP~v~~~ 138 (460)
...+.++++. .++|+|| |...+.+ ..+|+.+|||++-+.
T Consensus 54 -------~~~l~~~l~~-------~~i~~VI-DAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 54 -------PQELREFLKR-------HSIDILV-DATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -------HHHHHHHHHh-------cCCCEEE-EcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 1124455555 8899887 5444433 457899999999643
No 162
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.91 E-value=1.5 Score=35.92 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=47.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD 68 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (460)
++||++--.|+.|-..-.+.|++.|.++|+.|-=+-++.-.+--... ||+++++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~---------GF~Ivdl~t 60 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI---------GFKIVDLAT 60 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe---------eeEEEEccC
Confidence 46899999999999999999999999999999887777766544444 888888873
No 163
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=90.90 E-value=15 Score=34.90 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCccChHHHHHHHHHHHhC-CCEEEEEeCcc-chhHHhhccCcc--ccCCCCeEEEEcCCCC
Q 012594 13 PAQGHAGPLMKLSTKIAEH-GIKVTFVSTEH-MHAKITASMPQK--AEQSSLITMVSIPDGL 70 (460)
Q Consensus 13 ~~~gH~~p~~~La~~L~~r-Gh~V~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~i~~~~ 70 (460)
==+|++-.+..||+.|++. |+.|.+.+.+. .-..+....... .....|+++.......
T Consensus 9 DNfGDIGVcWRLArqLa~e~g~~VrLwvDdl~af~~i~P~~~~~~~~q~~~gv~i~~W~~~~ 70 (374)
T PF10093_consen 9 DNFGDIGVCWRLARQLAAEHGQQVRLWVDDLAAFARICPDLDPELSQQTIQGVEIRHWDAPF 70 (374)
T ss_pred cCCcchHHHHHHHHHHHHHhCCeEEEEECCHHHHHHhCCCCCcccccceECCeEEEecCCcc
Confidence 3579999999999999977 99999998763 222232222111 1233577777776544
No 164
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.83 E-value=13 Score=34.26 Aligned_cols=89 Identities=20% Similarity=0.307 Sum_probs=56.7
Q ss_pred CCCcEEeeccCc---hhhcCCCcccceeec---cChh-hhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCC
Q 012594 329 SDRGKLVEWAPQ---EKVLGHPSVACFLSH---CGWN-STLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDE 401 (460)
Q Consensus 329 ~~~v~~~~~~p~---~~ll~~~~~~~~I~h---gG~~-sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~ 401 (460)
..++.+.++++. ..++..+++ ++.- .|.| ++.||+++|+|+|... .......+.+. +.|....
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~-~~g~~~~--- 325 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDG-ETGLLVP--- 325 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCC-CceEecC---
Confidence 367788899883 236655554 5554 3443 4699999999998774 33334444431 3466332
Q ss_pred CCccCHHHHHHHHHHHhcChHHHHHHHH
Q 012594 402 NGIITRQEIQRQVKALLNDGGIKANALK 429 (460)
Q Consensus 402 ~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 429 (460)
..+.+.+.+++..++++.+.++...+
T Consensus 326 --~~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 326 --PGDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred --CCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22689999999999988744444443
No 165
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.26 E-value=1.7 Score=39.22 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=57.9
Q ss_pred eccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhh--hHHHHHhhhcceeEeecCCCCccCHHHHHHH
Q 012594 336 EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQ--NRNYIFDAWKIGLRFFPDENGIITRQEIQRQ 413 (460)
Q Consensus 336 ~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~--~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~ 413 (460)
.|-.+.++|.++++ .|--.|. .+..++-.|+|+|.+|-..-|+. .|+|=.+-+|+.+.+-. -.+..-...
T Consensus 301 sqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~~ 372 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQA 372 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHHH
Confidence 55555666766554 4433321 23446788999999999988864 55555555788888743 233334444
Q ss_pred HHHHhcChHHHHHHHHH-HHHHHH
Q 012594 414 VKALLNDGGIKANALKM-KQMARK 436 (460)
Q Consensus 414 i~~~l~~~~~~~~a~~l-~~~~~~ 436 (460)
.+++|.|+.+...+++= .+++.+
T Consensus 373 ~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 373 VQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHHHhcChHHHHHHHhcchhhccC
Confidence 55599999887777633 344444
No 166
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.82 E-value=5.8 Score=33.77 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc------chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH------MHAKITASMPQKAEQSSLITMVSIPDGLESHEADR 77 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 77 (460)
+..|.++...+.|-....+.+|-..+.+|++|.++-.-. ....++.. +++++.....++....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l--------~~v~~~~~g~~~~~~~--- 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG--------GGVEFHVMGTGFTWET--- 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC--------CCcEEEECCCCCcccC---
Confidence 457899999999999999999999999999999984322 22233222 3788887775433211
Q ss_pred ccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 78 RDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
.+..... ..........++.+.. .++|+||-|....
T Consensus 91 ~~~~e~~-~~~~~~~~~a~~~l~~-------~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 QDRERDI-AAAREGWEEAKRMLAD-------ESYDLVVLDELTY 126 (191)
T ss_pred CCcHHHH-HHHHHHHHHHHHHHhC-------CCCCEEEEehhhH
Confidence 1111111 1112222333344443 8999999997544
No 167
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.59 E-value=0.84 Score=45.79 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=62.1
Q ss_pred CCcEEeeccCc---hhhcCCCcccceeecc---ChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 330 DRGKLVEWAPQ---EKVLGHPSVACFLSHC---GWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 330 ~~v~~~~~~p~---~~ll~~~~~~~~I~hg---G~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
.+|.+.++... ...+.. ++++|.-+ |.++..||+.+|+|+| .......|... .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~--arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDK--LRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhh--heEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 56778888873 246755 45588766 6679999999999999 33344555653 6677762
Q ss_pred ccCHHHHHHHHHHHhcChH----HHHHHHHHHHHHH
Q 012594 404 IITRQEIQRQVKALLNDGG----IKANALKMKQMAR 435 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~~~~----~~~~a~~l~~~~~ 435 (460)
+.++|.++|..+|.+.+ +...+-+.++++.
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999884 4444444444443
No 168
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=89.49 E-value=2.7 Score=36.41 Aligned_cols=106 Identities=12% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc-chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHH
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH-MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (460)
+.||++.+.++-.|-....-++..|..+|++|+++..+- ..+.++.... .+.+++.+.-....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~------~~~d~v~lS~~~~~---------- 145 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE------HKPDILGLSALMTT---------- 145 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH------cCCCEEEEeccccc----------
Confidence 569999999999999999999999999999999887653 2333322210 14444444421111
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceE
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARA 135 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v 135 (460)
....++++++.+++...+.++.+++.-.. .....++.+|.=.+
T Consensus 146 --------~~~~~~~~i~~lr~~~~~~~~~i~vGG~~--~~~~~~~~~GaD~~ 188 (201)
T cd02070 146 --------TMGGMKEVIEALKEAGLRDKVKVMVGGAP--VNQEFADEIGADGY 188 (201)
T ss_pred --------cHHHHHHHHHHHHHCCCCcCCeEEEECCc--CCHHHHHHcCCcEE
Confidence 11235566666666331013445555542 23457888875433
No 169
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=89.44 E-value=0.64 Score=39.66 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 2 DREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 2 ~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
-++.||++...|+.|=+.-...++++|.++||+|.++.++...+.+
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 4567898888776666555799999999999999999998766554
No 170
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=89.41 E-value=1.5 Score=32.71 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHHH
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLIE 100 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (460)
++.+|+.|.+.|+++ ++|+...+.+++. |++...+.......+....+. .+++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~g~~----------------~i~~ 54 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKIGEGESPDGRV----------------QIMD 54 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEHSTG-GGTHCH----------------HHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeecccCccCCchh----------------HHHH
Confidence 478999999999664 5677888999887 788666553222221011111 3444
Q ss_pred HHhhcCCCCCccEEEeCCCcchH---------HHHHHHhCCceE
Q 012594 101 KVNKSNDCEKISCVIADLTVGWA---------LEVAEQMGIARA 135 (460)
Q Consensus 101 ~l~~~~~~~~~D~vv~D~~~~~~---------~~~A~~lgiP~v 135 (460)
.++. .+.|+||..+..... ..+|...+||++
T Consensus 55 ~i~~----~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 55 LIKN----GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHT----TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHc----CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 4444 899999987644422 346778899986
No 171
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=88.88 E-value=2 Score=36.81 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCccch-hHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHH
Q 012594 18 AGPLMKLSTKIAEHGIKVTFVSTEHMH-AKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLR 96 (460)
Q Consensus 18 ~~p~~~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (460)
+.-...+...+.++|-+|.|+++.... ..+++... . .+...+.-.=+++.++-. .........+...-...++
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~-~-~~~~~i~~rw~~G~LTN~----~~~~~~~~~~~~~~~~~~~ 115 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAE-R-TGSFYVNGRWLGGTLTNW----KTIRKSIKRLKKLEKEKLE 115 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH-H-cCCeeecCeecCCcCCCH----HHHHHHHHHHHHHHHHHHH
Confidence 344455667777889999999988643 33322210 0 011111112223333211 1111112222111113344
Q ss_pred HHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccch
Q 012594 97 NLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 97 ~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 142 (460)
..+..++... ..||+||+-...- .+..=|.++|||.|.+..+..
T Consensus 116 k~~~g~~~~~--~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 116 KNLGGIKDMF--RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred Hhcccccccc--cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 4444444444 7899877554222 667779999999999876654
No 172
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=88.74 E-value=0.58 Score=41.39 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=59.6
Q ss_pred EEEEEcCCCcc-ChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 6 HVLVIPFPAQG-HAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 6 ~Il~~~~~~~g-H~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
|||+-.= -| |.--+.+|++.|. .+++|+++.+...+..+.... +.-..++...+.... ......+....
T Consensus 2 rILlTND--DGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl----Tl~~Plr~~~~~~~~---~av~GTPaDCV 71 (252)
T COG0496 2 RILLTND--DGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSL----TLHEPLRVRQVDNGA---YAVNGTPADCV 71 (252)
T ss_pred eEEEecC--CccCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc----ccccCceeeEeccce---EEecCChHHHH
Confidence 4555442 22 3333667888888 999999999988777553321 111123322222100 00011111100
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeC----------CCcc---hHHHHHHHhCCceEEEcccch
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIAD----------LTVG---WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D----------~~~~---~~~~~A~~lgiP~v~~~~~~~ 142 (460)
.-.+..++++ .+||+||+. .+++ .|+.=|..+|||.|.+|....
T Consensus 72 -------~lal~~l~~~-------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~ 128 (252)
T COG0496 72 -------ILGLNELLKE-------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYR 128 (252)
T ss_pred -------HHHHHHhccC-------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhc
Confidence 0112333333 669999963 2233 455667889999999886643
No 173
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=88.64 E-value=7.5 Score=34.84 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=58.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCC-CC-CCCcCcccHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDG-LE-SHEADRRDLHKV 83 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~-~~~~~~~~~~~~ 83 (460)
|||+..==+. |---+..|+++|++ +|+|+++.+...+....... .....++...+... .. ........+..
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~si----t~~~pl~~~~~~~~~~~~~~~~v~GTPaD- 74 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSI----TIYEPIIIKEVKLEGINSKAYSISGTPAD- 74 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccc----cCCCCeEEEeeccCCCCccEEEECCcHHH-
Confidence 5666653221 12227788999965 68999999987766442221 11123444444310 00 00001111111
Q ss_pred HHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeC----------CCcc---hHHHHHHHhCCceEEEccc
Q 012594 84 RQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIAD----------LTVG---WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D----------~~~~---~~~~~A~~lgiP~v~~~~~ 140 (460)
++.--+..+.. .+||+||+- .+++ .|+.-|...|||.|.+|..
T Consensus 75 ----------cV~lal~~l~~----~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 75 ----------CVRVALDKLVP----DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred ----------HHHHHHHHhcC----CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 11111122223 679999963 3333 4556677889999998853
No 174
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.44 E-value=1.4 Score=35.36 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
++.+|++.+.++-+|-.-..-++..|..+|++|+++...--
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp 42 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS 42 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 46799999999999999999999999999999999987643
No 175
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=88.00 E-value=3.6 Score=36.68 Aligned_cols=112 Identities=20% Similarity=0.167 Sum_probs=60.1
Q ss_pred EEEEEcCCCccChHH-HHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC--CCCCCCcCcccHHH
Q 012594 6 HVLVIPFPAQGHAGP-LMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD--GLESHEADRRDLHK 82 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p-~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 82 (460)
|||+..= -|-..| +.+|+++|.+.| +|+++.+...+..+.... .....+++..+.. +.. .......+..
T Consensus 2 ~ILltND--DGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~-~~~v~GTPaD 73 (244)
T TIGR00087 2 KILLTND--DGIHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL----TLFEPLRVGQVKVKNGAH-IYAVDGTPTD 73 (244)
T ss_pred eEEEECC--CCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc----CCCCCeEEEEeccCCCcc-EEEEcCcHHH
Confidence 5665542 233333 668899999888 899999987766553321 1222455555431 110 0001111111
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCC----------Ccc---hHHHHHHHhCCceEEEccc
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADL----------TVG---WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~----------~~~---~~~~~A~~lgiP~v~~~~~ 140 (460)
++.--+..+.. .+||+||+-. +++ .++.-|..+|||.|.+|..
T Consensus 74 -----------cv~~gl~~l~~----~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 74 -----------CVILGINELMP----EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred -----------HHHHHHHHhcc----CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 11111222223 6799999643 222 4455677889999998853
No 176
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=88.00 E-value=0.85 Score=36.24 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=37.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
+||++...|+.+=+. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 388888888776666 999999999999999999998888777665
No 177
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.79 E-value=8.3 Score=34.50 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=26.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKIT 48 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~ 48 (460)
|||+..=-+. |---+.+|+++|+ .+|+|+++.+...+....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qSg~g 42 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERSATG 42 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCcccc
Confidence 5666553222 2233677888886 468999999987766553
No 178
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=87.76 E-value=11 Score=34.04 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=27.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
|||+..=-+. |---+..|++.|.+.| +|+++.+...+...
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 5665553222 3344778999998887 79999887766554
No 179
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=87.55 E-value=12 Score=30.94 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=59.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE---eCc---cchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFV---STE---HMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
-|.+.+.++.|-....+.+|-..+.+|++|.++ -.. .....+++. +++++.....+..... .+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l--------~~v~~~~~g~~~~~~~---~~ 72 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL--------PNIEIHRMGRGFFWTT---EN 72 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC--------CCcEEEECCCCCccCC---CC
Confidence 577888899999999999999999999999994 332 122333332 4788877765433211 11
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
....... ........++.+.. .++|+||-|....
T Consensus 73 ~~~~~~~-a~~~~~~a~~~~~~-------~~~dLlVLDEi~~ 106 (159)
T cd00561 73 DEEDIAA-AAEGWAFAKEAIAS-------GEYDLVILDEINY 106 (159)
T ss_pred hHHHHHH-HHHHHHHHHHHHhc-------CCCCEEEEechHh
Confidence 1111111 12222333444443 8899999997544
No 180
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.45 E-value=2.6 Score=44.83 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=66.7
Q ss_pred eccCch---hhcCCCcccceee---ccChh-hhhHhhhcCCc---eeeccccchhhhhHHHHHhhhc-ceeEeecCCCCc
Q 012594 336 EWAPQE---KVLGHPSVACFLS---HCGWN-STLEGLSMGVP---FLCWPYFADQYQNRNYIFDAWK-IGLRFFPDENGI 404 (460)
Q Consensus 336 ~~~p~~---~ll~~~~~~~~I~---hgG~~-sv~eal~~GvP---~i~~P~~~dQ~~~a~~v~~~lg-~g~~~~~~~~~~ 404 (460)
+++|.. .++..+++ |+. .-|+| +..|++++|+| +++++ +-...+.. +| -|+.++ .
T Consensus 362 ~~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~----l~~~allVn-----P 427 (797)
T PLN03063 362 CSVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQS----LGAGALLVN-----P 427 (797)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhh----hcCCeEEEC-----C
Confidence 345554 36766666 664 34766 56899999999 34443 22222222 34 577774 4
Q ss_pred cCHHHHHHHHHHHhc-Ch-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 405 ITRQEIQRQVKALLN-DG-GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 405 ~~~~~l~~~i~~~l~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
.+.+.++++|.++|+ ++ +-+++.+++.+.+.+ .+...-.++|++.|.+.
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 689999999999998 44 345556666666654 45666777787777654
No 181
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=87.08 E-value=15 Score=36.49 Aligned_cols=106 Identities=12% Similarity=0.024 Sum_probs=72.3
Q ss_pred cEEeeccCchh---hcCCCcccceee---ccChhhh-hHhhhcCC----ceeeccccchhhhhHHHHHhhhcceeEeecC
Q 012594 332 GKLVEWAPQEK---VLGHPSVACFLS---HCGWNST-LEGLSMGV----PFLCWPYFADQYQNRNYIFDAWKIGLRFFPD 400 (460)
Q Consensus 332 v~~~~~~p~~~---ll~~~~~~~~I~---hgG~~sv-~eal~~Gv----P~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~ 400 (460)
+++.+.+|+.+ ++..+++ ++. .-|+|-+ .|.++++. |+|.--+. -|. ++ +.-++.++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVN-- 431 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTN-- 431 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEEC--
Confidence 35668888876 5656666 443 4588866 69999988 54443222 222 33 45577874
Q ss_pred CCCccCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 012594 401 ENGIITRQEIQRQVKALLNDG--GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKA 457 (460)
Q Consensus 401 ~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 457 (460)
..+.+.++++|.++|+.+ +-+++.+++.+.++. .+...=.++|++.|.+
T Consensus 432 ---P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 432 ---PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred ---CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 478999999999999876 456677777777764 4666667888887765
No 182
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=87.04 E-value=7 Score=28.62 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHHH
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLIE 100 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (460)
++.+++.|++.|++|. +++...+.+++. |+++..+......+. + ..++
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~---------Gi~~~~~~~ki~~~~------------------~---~i~~ 49 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREA---------GLPVKTLHPKVHGGI------------------L---AILD 49 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHC---------CCcceeccCCCCCCC------------------H---HHHH
Confidence 4689999999999984 455677888776 666532111111010 1 2344
Q ss_pred HHhhcCCCCCccEEEeCCCc--c-------hHHHHHHHhCCceE
Q 012594 101 KVNKSNDCEKISCVIADLTV--G-------WALEVAEQMGIARA 135 (460)
Q Consensus 101 ~l~~~~~~~~~D~vv~D~~~--~-------~~~~~A~~lgiP~v 135 (460)
.++. .++|+||..... . .-...|...+||++
T Consensus 50 ~i~~----g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 50 LIKN----GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HhcC----CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 4444 899999985431 1 22346788899986
No 183
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=86.81 E-value=13 Score=31.12 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=59.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE---eCc---cchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFV---STE---HMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
.-|.+++..+.|-....+.+|-..+.+|++|.++ -.. .....+++. ++++.....++.... .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~---------~~~~~~~g~g~~~~~---~ 73 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH---------GVEFQVMGTGFTWET---Q 73 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc---------CcEEEECCCCCeecC---C
Confidence 4678888899999999999999999999999665 222 122333332 677777765543211 1
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
+..... ..........++.+.. .++|+||-|....
T Consensus 74 ~~~~~~-~~~~~~~~~a~~~l~~-------~~~DlvVLDEi~~ 108 (173)
T TIGR00708 74 NREADT-AIAKAAWQHAKEMLAD-------PELDLVLLDELTY 108 (173)
T ss_pred CcHHHH-HHHHHHHHHHHHHHhc-------CCCCEEEehhhHH
Confidence 111111 1122222334444444 8999999997544
No 184
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.60 E-value=5.9 Score=34.11 Aligned_cols=100 Identities=11% Similarity=0.081 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc----hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM----HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
+.||++.+.++-.|-....-++.-|..+|++|+++..+-- .+.+.+. +.+++.+.-.....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~---------~pd~v~lS~~~~~~------ 148 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE---------KPLMLTGSALMTTT------ 148 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc---------CCCEEEEccccccC------
Confidence 4699999999999999999999999999999999987643 3333333 45554444322111
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCC
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGI 132 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgi 132 (460)
...++++++.+++.....++-++|.-... ...+|+.+|.
T Consensus 149 ------------~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~ga 187 (197)
T TIGR02370 149 ------------MYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGA 187 (197)
T ss_pred ------------HHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCC
Confidence 12245566666664210235566665432 3456777765
No 185
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=86.57 E-value=0.44 Score=46.49 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=47.1
Q ss_pred hhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHHHHHH
Q 012594 360 STLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKANALK 429 (460)
Q Consensus 360 sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~ 429 (460)
++.||+++|+|++++ ++..-++.++. .--|...++ +.-....+++++.++..|++++.+..+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 579999999999999 77777777776 367777754 222334799999999999987655543
No 186
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.25 E-value=3.3 Score=41.09 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=61.2
Q ss_pred EeeccCchh---hcCCCcccceee---ccCh-hhhhHhhhcCCc----eeeccccchhhhhHHHHHhhhcceeEeecCCC
Q 012594 334 LVEWAPQEK---VLGHPSVACFLS---HCGW-NSTLEGLSMGVP----FLCWPYFADQYQNRNYIFDAWKIGLRFFPDEN 402 (460)
Q Consensus 334 ~~~~~p~~~---ll~~~~~~~~I~---hgG~-~sv~eal~~GvP----~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~ 402 (460)
+.+++++.+ ++..+++ +|. +-|+ .+++||+++|+| +|+.-..+ .+. . ..-|..++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~---~-~~~g~lv~---- 410 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAE---E-LSGALLVN---- 410 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chh---h-cCCCEEEC----
Confidence 447777765 5766666 653 3454 467999999999 54442221 111 1 13466663
Q ss_pred CccCHHHHHHHHHHHhcCh-H-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012594 403 GIITRQEIQRQVKALLNDG-G-IKANALKMKQMARKSLVEGGSSFRNFESFVSQL 455 (460)
Q Consensus 403 ~~~~~~~l~~~i~~~l~~~-~-~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 455 (460)
..+.+.++++|.++++++ + .+++.++..+.+. .-+...-++.++..|
T Consensus 411 -p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 411 -PYDIDEVADAIHRALTMPLEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 357899999999999865 2 3333333333333 356666666666654
No 187
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=85.81 E-value=12 Score=34.26 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=68.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccC------ccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMP------QKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
+|.|--.|+.|-=.-.-.|+++|.++||+|-++.-++...+.-.... +.....+++=+.++|. ...
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s--------rG~ 124 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS--------RGT 124 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC--------Ccc
Confidence 56677789999999999999999999999999987664332211110 0011123444444441 111
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEccc
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~ 140 (460)
... ......+.+..+.. ..+|+||+..--. .=..+++...+=.+...+.
T Consensus 125 lGG--------lS~at~~~i~~ldA----aG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 125 LGG--------LSRATREAIKLLDA----AGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred chh--------hhHHHHHHHHHHHh----cCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 111 12224455555555 8899999985333 2345667777655544433
No 188
>PRK06849 hypothetical protein; Provisional
Probab=85.61 E-value=5.4 Score=38.59 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
|.++++|++.... ....+++++.|.++||+|+++.....
T Consensus 1 ~~~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGAR----APAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 6677888887532 22589999999999999999987653
No 189
>PRK12342 hypothetical protein; Provisional
Probab=85.48 E-value=8.6 Score=34.51 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=25.2
Q ss_pred CCccEEEeCCCcc------hHHHHHHHhCCceEEEccc
Q 012594 109 EKISCVIADLTVG------WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 109 ~~~D~vv~D~~~~------~~~~~A~~lgiP~v~~~~~ 140 (460)
..||+|++..... .+..+|+.||+|++.+...
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 5699999865444 4789999999999976544
No 190
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=85.36 E-value=2.2 Score=42.82 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=45.8
Q ss_pred chhhcCCCcccceee---ccC-hhhhhHhhhcCCceeeccccc-hhhhhHHHHHhhhcceeEeecCC--CCccCHHHHHH
Q 012594 340 QEKVLGHPSVACFLS---HCG-WNSTLEGLSMGVPFLCWPYFA-DQYQNRNYIFDAWKIGLRFFPDE--NGIITRQEIQR 412 (460)
Q Consensus 340 ~~~ll~~~~~~~~I~---hgG-~~sv~eal~~GvP~i~~P~~~-dQ~~~a~~v~~~lg~g~~~~~~~--~~~~~~~~l~~ 412 (460)
..+++..+++ +|. +=| .-+++||+++|+|+|+..... .... -..+......|+.+.... .-..+.+.|++
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v-~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM-EEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh-HHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 4456655555 555 334 458899999999999986542 1211 122211102566664211 11235688899
Q ss_pred HHHHHhcCh
Q 012594 413 QVKALLNDG 421 (460)
Q Consensus 413 ~i~~~l~~~ 421 (460)
+|.++++.+
T Consensus 545 ~m~~~~~~~ 553 (590)
T cd03793 545 YMYEFCQLS 553 (590)
T ss_pred HHHHHhCCc
Confidence 999988543
No 191
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=84.80 E-value=3.9 Score=40.08 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
|.+++|||++-.+++-| +|++.|++.++-..+++.+.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 78889999999998877 6899999888665666665554
No 192
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=83.95 E-value=3.5 Score=43.60 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=67.7
Q ss_pred EEeeccCchh---hcCCCcccceeec---cCh-hhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCcc
Q 012594 333 KLVEWAPQEK---VLGHPSVACFLSH---CGW-NSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGII 405 (460)
Q Consensus 333 ~~~~~~p~~~---ll~~~~~~~~I~h---gG~-~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~ 405 (460)
++.+++++.+ ++..+++ |+.- -|+ .++.|++++|+|-...|...+-..-+. + +.-|+.++ ..
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~-----P~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVN-----PN 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEEC-----CC
Confidence 3557888775 6666666 6543 354 467999999776322332222222222 2 23377774 35
Q ss_pred CHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 406 TRQEIQRQVKALLNDG--GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 406 ~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
+.+.++++|.++|+.+ +.+++.+++.+.+. .-+...-++.|++.+.+.
T Consensus 414 d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEEEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 7999999999999854 45555555555554 256667777777776653
No 193
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=83.86 E-value=15 Score=32.82 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=59.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
|||+..==+. |.--+..|+++|.+. |+|+++.+...+....... .....+++..+..+. ......+..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~~---~~v~GTPaD--- 69 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL----TLTRPLRVEKVDNGF---YAVDGTPTD--- 69 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc----cCCCCeEEEEecCCe---EEECCcHHH---
Confidence 5666553221 233377889999988 7999999987766553321 111234444442110 001111111
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeC----------CCcc---hHHHHHHHhCCceEEEccc
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIAD----------LTVG---WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D----------~~~~---~~~~~A~~lgiP~v~~~~~ 140 (460)
++.--+..+.. .+||+||+- .+++ .++.-|...|||.|.+|..
T Consensus 70 --------cV~~gl~~l~~----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 70 --------CVHLALNGLLD----PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred --------HHHHHHHhhcc----CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 12222222323 579999963 2233 4455677889999998863
No 194
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=83.85 E-value=5 Score=35.18 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=36.4
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
-|.|++. ||.|-.--.+.||.+|+++|-.|+++=.++++...
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 5667766 89999999999999999999999999888876544
No 195
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.69 E-value=2.2 Score=33.19 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=26.5
Q ss_pred CEEEEEcCCCcc---ChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 5 PHVLVIPFPAQG---HAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 5 ~~Il~~~~~~~g---H~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+||+|+.-|-.+ .-.-+++|+.+-++|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 478888766444 34568899999999999999998765
No 196
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=83.62 E-value=12 Score=32.37 Aligned_cols=104 Identities=8% Similarity=-0.005 Sum_probs=53.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC--CEEEEEeCcc----chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHG--IKVTFVSTEH----MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rG--h~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
+||+++..+..+=+. +|.+.+.+.+ ++|.++.++. ..+...+. ++.+..++......
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~---------gIp~~~~~~~~~~~----- 64 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA---------GIPTFVLDHKDFPS----- 64 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc---------CCCEEEECccccCc-----
Confidence 389998877644333 5666676554 7888765543 22233333 67776654211100
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEcccc
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPYA 141 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 141 (460)
.......+.+.++. .+||++|+-.+.. ....+-+...-.++-++++.
T Consensus 65 ---------~~~~~~~~~~~l~~-------~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpsl 112 (200)
T PRK05647 65 ---------REAFDAALVEALDA-------YQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSL 112 (200)
T ss_pred ---------hhHhHHHHHHHHHH-------hCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCcc
Confidence 00111223344444 8999999754322 33333344444456555543
No 197
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=82.52 E-value=9.4 Score=32.84 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=30.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
|+|+-..+.|-..=...||..++.+|..|.+++.+.++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 44555568999999999999999999999999998763
No 198
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=82.45 E-value=3.7 Score=35.01 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=48.5
Q ss_pred CCCccChHHHHHHHHHHHhC--CCEEEEEeCccc-hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHH
Q 012594 12 FPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHM-HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSML 88 (460)
Q Consensus 12 ~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
..+-|-+....+|+++|.++ |+.|.+=++... .+.+.+... +.+...-+|-+.
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D~------------------ 83 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLDF------------------ 83 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---SS------------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCccC------------------
Confidence 45789999999999999987 888888776443 333333311 122222233211
Q ss_pred hhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHH--HHHHhCCceEEEccc
Q 012594 89 TVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALE--VAEQMGIARAAVIPY 140 (460)
Q Consensus 89 ~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~--~A~~lgiP~v~~~~~ 140 (460)
...++.+++. ++||++|.-....|-.. .|++.|||.+.+..-
T Consensus 84 ---~~~~~rfl~~-------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 84 ---PWAVRRFLDH-------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ---HHHHHHHHHH-------H--SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred ---HHHHHHHHHH-------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 2336677777 88999887777776654 467789999986543
No 199
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.93 E-value=2.5 Score=38.23 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=37.4
Q ss_pred ccceeeccChhhhhHhhh------cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS------MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~------~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+-||-||++.++. .++|++.+-. . .+|.. ..++.+++.+.++++++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G-~lGFL------~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------G-HLGFY------TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------C-Cceec------ccCCHHHHHHHHHHHHcCC
Confidence 445999999999999976 4889988821 1 22222 3356777888888888643
No 200
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=81.59 E-value=9.2 Score=32.40 Aligned_cols=107 Identities=8% Similarity=-0.011 Sum_probs=54.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCE--EEEEe-CccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIK--VTFVS-TEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLH 81 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~--V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 81 (460)
|||+|+.+++. ..+..+.+.|.+++|+ |..+. .++.......... .++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~~~----------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADEKN----------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHGGG-----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccccC-----------
Confidence 48998876655 4566778899999997 44444 4333221111100 122221111000
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEcccc
Q 012594 82 KVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPYA 141 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 141 (460)
+ ..-...-.++++.+++ .+||++|+-.+.. -...+-+.....++-++++.
T Consensus 61 -----~-~~~~~~~~~~~~~l~~----~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpsl 111 (181)
T PF00551_consen 61 -----F-QPRSENDEELLELLES----LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSL 111 (181)
T ss_dssp -----S-SSHHHHHHHHHHHHHH----TT-SEEEESS-SS---HHHHHHSTTSEEEEESSS
T ss_pred -----C-CchHhhhhHHHHHHHh----hccceeehhhhHHHhhhhhhhcccccEEEEeecC
Confidence 0 0000112233444444 8999998876543 45555677777788777664
No 201
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=81.53 E-value=34 Score=29.47 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=29.6
Q ss_pred CEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 5 PHVLVIPF--PAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 5 ~~Il~~~~--~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+|++.++. ++-|-..-...||..|+++|++|.++=.+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 55554443 577888889999999999999999985543
No 202
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=81.27 E-value=19 Score=28.12 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=33.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
||++.+.++-.|..-..-++.-|...|++|.+....-
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 6899999999999999999999999999999998753
No 203
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.18 E-value=3.8 Score=32.80 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
++.||++.+.+.-||-....-+++.|+..|.+|.....-...
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp 52 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP 52 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH
Confidence 578999999999999999999999999999999998655443
No 204
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=81.10 E-value=6.5 Score=35.25 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=54.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
|||+++.+-+-| ..|++.|.++|+ |.+-+..++...+..... ....+ ..+.+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~------~~~~v--~~G~lg------------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPEL------PGLEV--RVGRLG------------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhcccc------CCceE--EECCCC-------------
Confidence 478888766655 478999999998 655444444443332100 01221 111110
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchH-------HHHHHHhCCceEEEc
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA-------LEVAEQMGIARAAVI 138 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~-------~~~A~~lgiP~v~~~ 138 (460)
-...+.+++++ .++|+|| |..-+.+ ..+|+.+|||++-+.
T Consensus 54 ------~~~~l~~~l~~-------~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 ------DEEGLAEFLRE-------NGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred ------CHHHHHHHHHh-------CCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 11235555666 8899998 6544433 457899999999654
No 205
>PRK07206 hypothetical protein; Provisional
Probab=80.89 E-value=8.4 Score=37.65 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
|++ +|+++-.... -..++++++++|+++.+++....
T Consensus 1 ~~k--~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 1 MMK--KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred CCC--eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCC
Confidence 554 7887775433 34689999999999999887643
No 206
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=80.37 E-value=30 Score=28.14 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=31.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
|.+...++.|--..+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 667777899999999999999999999999987664
No 207
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=80.28 E-value=17 Score=34.01 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 479998766543 66778888899999876654
No 208
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=80.12 E-value=7.9 Score=36.04 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=25.2
Q ss_pred CCccEEEe-CCCcc-hHHHHHHHhCCceEEEcccch
Q 012594 109 EKISCVIA-DLTVG-WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 109 ~~~D~vv~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (460)
..||+||+ |+..- .+..=|.++|||.|.+..+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 47997765 54333 777789999999999876654
No 209
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=79.88 E-value=53 Score=30.74 Aligned_cols=269 Identities=13% Similarity=0.083 Sum_probs=127.9
Q ss_pred CCccEEEeCCCcchHHHH-HHHhCCceEEEcccchHHHHHHHhhhhHhhhcCCCCCCCCCCCCcccccCCCCCCccccCC
Q 012594 109 EKISCVIADLTVGWALEV-AEQMGIARAAVIPYAPASLALVLHAPKLVEAGLLDSNGNAMTDEPILLSEGTLPWKKKEYG 187 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~-A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 187 (460)
..||+.|-...++....+ ++-.++|++.+.+.+...+.+...+...+..
T Consensus 149 ~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s------------------------------ 198 (465)
T KOG1387|consen 149 FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKS------------------------------ 198 (465)
T ss_pred CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhhc------------------------------
Confidence 789999966666655544 4455999999988887665543322110000
Q ss_pred CCCCCCCcchhHHHHHHHHHHhh-cccccEEEEccccccCccccccCCC-eeeeCccCCCCCccCccCCCCCCCCchhhh
Q 012594 188 WCFPSQPHMQKLFFGACSAVAQN-LKISNWILCNSFYELDPPACDLIPN-ILTIGPLLGRDHLEHSAVNFWPEDSTCLGW 265 (460)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~le~~~~~~~p~-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~ 265 (460)
.++ ....-.+++.+...... -..+|.++.|+.+.=..-..-|..+ ...|-|-+..+. +.+-
T Consensus 199 -~~l--~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e~--------------lks~ 261 (465)
T KOG1387|consen 199 -GIL--VWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTED--------------LKSK 261 (465)
T ss_pred -chh--hhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEcCCCCHHH--------------HHHH
Confidence 000 01122344555554444 3567899999988533321112222 222333222111 1111
Q ss_pred hccCCCCcEEEEEcCCCcCCCH-HHHHHHHHHHHhC-----CCCE-EEEEcCCCCccccCCCchhH----Hh-hhCCCcE
Q 012594 266 LDKQAVGSVIYVAFGSVAVLSQ-EQLEELALGLESL-----QQPF-LWVVRPDFMNKSHAKLPDGF----VE-RVSDRGK 333 (460)
Q Consensus 266 l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~-----~~~~-i~~~~~~~~~~~~~~~~~~~----~~-~~~~~v~ 333 (460)
....+++-+..+++|-...-.. +.++..+--+.+. ..++ +..+++ ..+++....-.++ .+ ..+.++.
T Consensus 262 ~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGS-cRneeD~ervk~Lkd~a~~L~i~~~v~ 340 (465)
T KOG1387|consen 262 FGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGS-CRNEEDEERVKSLKDLAEELKIPKHVQ 340 (465)
T ss_pred hcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEec-cCChhhHHHHHHHHHHHHhcCCccceE
Confidence 1112345578888886532222 2222222222211 1222 222222 2221111111111 11 2467888
Q ss_pred EeeccCchh---hcCCCcccceeeccChh-----hhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCcc
Q 012594 334 LVEWAPQEK---VLGHPSVACFLSHCGWN-----STLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGII 405 (460)
Q Consensus 334 ~~~~~p~~~---ll~~~~~~~~I~hgG~~-----sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~ 405 (460)
+..-+|+.+ +|..+.. =-|+=+| +|.|.+++|.=+|+---.+--.+. |.. -.|-.... -..
T Consensus 341 F~~N~Py~~lv~lL~~a~i---Gvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDI---V~~--~~G~~tGF---la~ 409 (465)
T KOG1387|consen 341 FEKNVPYEKLVELLGKATI---GVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDI---VTP--WDGETTGF---LAP 409 (465)
T ss_pred EEecCCHHHHHHHhcccee---ehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceee---eec--cCCcccee---ecC
Confidence 988899887 4443332 1222222 788999999755543111111110 000 01111100 124
Q ss_pred CHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHH
Q 012594 406 TRQEIQRQVKALLNDG-----GIKANALKMKQMARK 436 (460)
Q Consensus 406 ~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~ 436 (460)
|.++-+++|.+++... .+|++|+.-.++|.+
T Consensus 410 t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 410 TDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 6788888988888643 478888887777765
No 210
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=79.74 E-value=8.9 Score=34.57 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=51.5
Q ss_pred HHHHHHHHHhC---CCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHH
Q 012594 21 LMKLSTKIAEH---GIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRN 97 (460)
Q Consensus 21 ~~~La~~L~~r---Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (460)
+.+|++.|.+. |++|+++.+...+....... +....+++..+..+. ......+...... .+..
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai----T~~~pl~~~~~~~~~---yav~GTPaDCV~l-------al~~ 81 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI----SYTHPMMIAELGPRR---FAAEGSPADCVLA-------ALYD 81 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc----cCCCCeEEEEeCCCe---EEEcCchHHHHHH-------HHHH
Confidence 55677777663 47999999987665443221 111235555543211 0011111111111 1122
Q ss_pred HHHHHhhcCCCCCccEEEe----------CCCcc---hHHHHHHHhCCceEEEcc
Q 012594 98 LIEKVNKSNDCEKISCVIA----------DLTVG---WALEVAEQMGIARAAVIP 139 (460)
Q Consensus 98 ~l~~l~~~~~~~~~D~vv~----------D~~~~---~~~~~A~~lgiP~v~~~~ 139 (460)
++. . .+||+||+ |.+++ .++.-|..+|||.|.+|.
T Consensus 82 ~~~---~----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 82 VMK---D----APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred hcC---C----CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 222 1 46999996 33333 445556788999999985
No 211
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=79.20 E-value=7.9 Score=34.68 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=54.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
+|+++.+-+-| ..|++.|.++|+.|++-+...... .... +..++ .+.+.
T Consensus 4 ~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~---------~~~v~--~G~l~-------------- 52 (248)
T PRK08057 4 RILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADL---------PGPVR--VGGFG-------------- 52 (248)
T ss_pred eEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccC---------CceEE--ECCCC--------------
Confidence 88888876666 468999999999888755544333 1111 22221 11110
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchH-------HHHHHHhCCceEEEc
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA-------LEVAEQMGIARAAVI 138 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~-------~~~A~~lgiP~v~~~ 138 (460)
-...+.+++++ .+.|+|| |..-+.+ ..+|+.+|||++-+.
T Consensus 53 -----~~~~l~~~l~~-------~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 -----GAEGLAAYLRE-------EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred -----CHHHHHHHHHH-------CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 11234555566 8899988 5544433 457899999999654
No 212
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=79.19 E-value=2.9 Score=35.47 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=35.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKIT 48 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~ 48 (460)
||++...|+.|=+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 89888888777665 7899999999999999999988776664
No 213
>PRK05920 aromatic acid decarboxylase; Validated
Probab=78.96 E-value=3.3 Score=35.72 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=35.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhh
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~ 49 (460)
+||++...|+.+= .=...+.+.|.+.||+|.++.+......+..
T Consensus 4 krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 4 KRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 4888877675554 6788999999999999999999887776643
No 214
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=78.85 E-value=26 Score=26.71 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=56.2
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHH
Q 012594 16 GHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCL 95 (460)
Q Consensus 16 gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
++-.-+..+++.|.+.|+++. +++...+.+.+. |+.+..+..... ..+.+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~~~-------------------~~~~i 59 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKVSE-------------------GRPNI 59 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeecCC-------------------CchhH
Confidence 355678899999999999984 466778888776 777544432110 11234
Q ss_pred HHHHHHHhhcCCCCCccEEEeCCCc-------chHHHHHHHhCCceEE
Q 012594 96 RNLIEKVNKSNDCEKISCVIADLTV-------GWALEVAEQMGIARAA 136 (460)
Q Consensus 96 ~~~l~~l~~~~~~~~~D~vv~D~~~-------~~~~~~A~~lgiP~v~ 136 (460)
.++++. .++|+||..... ..-...|-.+|||++.
T Consensus 60 ~~~i~~-------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 60 VDLIKN-------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHc-------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 455555 899999985322 2445568888999994
No 215
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=78.81 E-value=4.1 Score=29.08 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=30.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEE
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFV 38 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~ 38 (460)
..++++..+...|...+..+|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3578888899999999999999999999999865
No 216
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=78.72 E-value=1.1 Score=38.05 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCccChHH------------HHHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPFPAQGHAGP------------LMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p------------~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+.||++-.+|+.=++.| -..||+++..+|++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45777777777766665 3589999999999999999974
No 217
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=78.70 E-value=5.6 Score=38.94 Aligned_cols=121 Identities=16% Similarity=0.220 Sum_probs=61.5
Q ss_pred ccChHHHHHHHHHHHh--------CCCE----EEEEeCccchhHHhhc--cCccccCCCCeEEEEcCCCCCC----CCcC
Q 012594 15 QGHAGPLMKLSTKIAE--------HGIK----VTFVSTEHMHAKITAS--MPQKAEQSSLITMVSIPDGLES----HEAD 76 (460)
Q Consensus 15 ~gH~~p~~~La~~L~~--------rGh~----V~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~ 76 (460)
.|-+.=.+.+|++|.+ .|-+ |.++|.--....-... .........+..+..+|-+-.. ....
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwis 375 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWIS 375 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhccc
Confidence 3445556777777753 3544 6666532111101111 1111233456777777743332 2225
Q ss_pred cccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchH
Q 012594 77 RRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPA 143 (460)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 143 (460)
..++|.+++.+.+. ..+.+.+++. .+||+|+...... .|.++++++|||.....++.-.
T Consensus 376 rf~lWPyLe~fa~d---~~~~i~~e~~-----~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLek 436 (550)
T PF00862_consen 376 RFDLWPYLEEFADD---AEREILAELQ-----GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLEK 436 (550)
T ss_dssp GGG-GGGHHHHHHH---HHHHHHHHHT-----S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-HH
T ss_pred hhhchhhHHHHHHH---HHHHHHHHhC-----CCCcEEEeccCcchHHHHHHHhhcCCceehhhhcccc
Confidence 56777778877654 2333334332 6899999875333 7788999999999988777654
No 218
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=78.34 E-value=20 Score=30.15 Aligned_cols=111 Identities=11% Similarity=0.139 Sum_probs=61.8
Q ss_pred cChHHHHHHHHHH-HhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCC-------------CCCC------Cc
Q 012594 16 GHAGPLMKLSTKI-AEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDG-------------LESH------EA 75 (460)
Q Consensus 16 gH~~p~~~La~~L-~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------~~~~------~~ 75 (460)
+.+.-.+..|+.| .+.|.+|.+.-. .+.+.+++.. ++.++.++.. .... ..
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 4566678889999 788999977544 5666676653 4555555411 0000 00
Q ss_pred CcccHHHHHHHHHh--------hchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccchH
Q 012594 76 DRRDLHKVRQSMLT--------VMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAPA 143 (460)
Q Consensus 76 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 143 (460)
...++.. +..+.. .-...+...+..+.. ...|+||.+. ....+|+++|+|++.+.++...
T Consensus 88 ~~~~~~~-~~~ll~~~i~~~~~~~~~e~~~~i~~~~~----~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 88 IIPGLES-IEELLGVDIKIYPYDSEEEIEAAIKQAKA----EGVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp -SCCHHH-HHHHHT-EEEEEEESSHHHHHHHHHHHHH----TT--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred ccHHHHH-HHHHhCCceEEEEECCHHHHHHHHHHHHH----cCCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 1111111 111111 114557778888887 8899999995 3578899999999988775544
No 219
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=78.15 E-value=22 Score=27.47 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHH
Q 012594 17 HAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLR 96 (460)
Q Consensus 17 H~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (460)
+-.-+..+++.|.+.|++|. +++...+.+.+. |+.+..+....... ... .+.+.
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~~~~~--~~~-------------~~~i~ 64 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWPSEEP--QND-------------KPSLR 64 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeeccCCC--CCC-------------chhHH
Confidence 44567899999999999884 566778888776 66554443211100 000 13345
Q ss_pred HHHHHHhhcCCCCCccEEEeCCC---------cchHHHHHHHhCCceE
Q 012594 97 NLIEKVNKSNDCEKISCVIADLT---------VGWALEVAEQMGIARA 135 (460)
Q Consensus 97 ~~l~~l~~~~~~~~~D~vv~D~~---------~~~~~~~A~~lgiP~v 135 (460)
++++. .++|+||.-+. .+.....|-.+|||++
T Consensus 65 ~~i~~-------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 65 ELLAE-------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred HHHHc-------CCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 55555 88999998542 1234557889999997
No 220
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=78.03 E-value=52 Score=29.54 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=54.5
Q ss_pred HHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhh-----CCCcEE-----eeccCchhhcCCCcccceeeccCh-hhh
Q 012594 293 LALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERV-----SDRGKL-----VEWAPQEKVLGHPSVACFLSHCGW-NST 361 (460)
Q Consensus 293 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~-----~~~~p~~~ll~~~~~~~~I~hgG~-~sv 361 (460)
+.+.+++.+.++++++..- -|+...... +..+.+ +++=|+-++|+.++- +|.-..+ +-.
T Consensus 189 l~k~l~~~g~~~lisfSRR--------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~ 258 (329)
T COG3660 189 LVKILENQGGSFLISFSRR--------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMC 258 (329)
T ss_pred HHHHHHhCCceEEEEeecC--------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhh
Confidence 4455677788888887643 122221111 112222 255689999966554 7776665 555
Q ss_pred hHhhhcCCceeec--ccc-chhh-hhHHHHHhhhcceeEee
Q 012594 362 LEGLSMGVPFLCW--PYF-ADQY-QNRNYIFDAWKIGLRFF 398 (460)
Q Consensus 362 ~eal~~GvP~i~~--P~~-~dQ~-~~a~~v~~~lg~g~~~~ 398 (460)
.||.+-|+|+-++ |.+ .+.+ -.-+.++| .|++....
T Consensus 259 sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~e-q~~AR~f~ 298 (329)
T COG3660 259 SEAASTGKPVFILEPPNFNSLKFRIFIEQLVE-QKIARPFE 298 (329)
T ss_pred HHHhccCCCeEEEecCCcchHHHHHHHHHHHH-hhhccccC
Confidence 8999999999665 333 2222 22244455 36666663
No 221
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=77.95 E-value=48 Score=31.10 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCcEE-eeccCchh---hcCCCcccceeec--cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 330 DRGKL-VEWAPQEK---VLGHPSVACFLSH--CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 330 ~~v~~-~~~~p~~~---ll~~~~~~~~I~h--gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
+++.+ .+++|.++ +|..+++..|.|. =|.|++.-.|+.|+|+++- .+-..-+-+.+ .|+-+.... +
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~~---d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFYG---D 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEecc---c
Confidence 57765 47888664 8988888666664 5899999999999999876 33334445556 477777653 7
Q ss_pred ccCHHHHHHHHHHHhc
Q 012594 404 IITRQEIQRQVKALLN 419 (460)
Q Consensus 404 ~~~~~~l~~~i~~~l~ 419 (460)
.++...|+++=+++.+
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 7899999888887774
No 222
>PRK10867 signal recognition particle protein; Provisional
Probab=77.74 E-value=16 Score=35.80 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=33.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCccchhH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEH-GIKVTFVSTEHMHAK 46 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~r-Gh~V~~~~~~~~~~~ 46 (460)
|+++..++.|-..-...||..|+++ |+.|.+++.+.++..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 4455567999999999999999999 999999999876553
No 223
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=77.71 E-value=52 Score=29.37 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=31.0
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
.|++... |+-|-..-.-+||..|++.|++|..+=-+
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 6766665 79999999999999999999999998544
No 224
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.59 E-value=18 Score=34.92 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=41.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSI 66 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 66 (460)
.|+++-.=+.|-..-.-.||+.|.++|+.|.+++.+-++...-+.+ .......++.|+..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL-~~La~q~~v~~f~~ 161 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQL-KQLAEQVGVPFFGS 161 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHH-HHHHHHcCCceecC
Confidence 3555555699999999999999999999999999887654432221 00112236777665
No 225
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=77.57 E-value=14 Score=30.55 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=56.5
Q ss_pred EEEEcCCCccChHH----HHHHHHHHHhC-CCEEEEEeCcc---chhH----HhhccCccccCCCCe-EEEEcCCCCCCC
Q 012594 7 VLVIPFPAQGHAGP----LMKLSTKIAEH-GIKVTFVSTEH---MHAK----ITASMPQKAEQSSLI-TMVSIPDGLESH 73 (460)
Q Consensus 7 Il~~~~~~~gH~~p----~~~La~~L~~r-Gh~V~~~~~~~---~~~~----~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 73 (460)
|+++.-...|.+++ .+..|++|++. |.+|+.++... ..+. +... |. +.+.+.......
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~---------G~d~v~~~~~~~~~~ 72 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY---------GADKVYHIDDPALAE 72 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST---------TESEEEEEE-GGGTT
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc---------CCcEEEEecCccccc
Confidence 44444434555555 56889999864 78888887653 2233 2223 44 233343211100
Q ss_pred CcCcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc---hHHHHHHHhCCceEEEcc
Q 012594 74 EADRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG---WALEVAEQMGIARAAVIP 139 (460)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~ 139 (460)
. +. .. ....+.++++. .+||+|+.-.... .+..+|.++|.|++.-..
T Consensus 73 ~----~~----~~----~a~~l~~~~~~-------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 73 Y----DP----EA----YADALAELIKE-------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp C-----H----HH----HHHHHHHHHHH-------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred c----CH----HH----HHHHHHHHHHh-------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 0 00 11 12334555555 6899999886555 567789999999997443
No 226
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=77.53 E-value=20 Score=31.34 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+.||++.+.++-.|-....=++..|..+|++|+++..+-
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 569999999999999999999999999999999998654
No 227
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.36 E-value=24 Score=32.85 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=35.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
|+|+-.-+.|-..-.-.||..|.+.|+.|.++..+.|+...
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 45666789999999999999999999999999999876544
No 228
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=77.30 E-value=21 Score=31.45 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=37.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC-CEEEEEeCccchhHHhhcc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHG-IKVTFVSTEHMHAKITASM 51 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rG-h~V~~~~~~~~~~~~~~~~ 51 (460)
++|++.--|+.|-..-.--|++.|.++| ++|.++=.+++.+.-.+.+
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LG 48 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALG 48 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcC
Confidence 4788888899999888888788888886 9999998887766555553
No 229
>PHA02542 41 41 helicase; Provisional
Probab=77.20 E-value=14 Score=36.67 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA 45 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 45 (460)
|++...|+.|-..-.+.+|...++.|+.|.|++-+-..+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 566777999999999999999998999999998765444
No 230
>PRK06988 putative formyltransferase; Provisional
Probab=76.92 E-value=23 Score=33.11 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=23.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
+||+|+..+. ......+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 5999996554 3355667788889998877764
No 231
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=76.58 E-value=4.4 Score=34.41 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=36.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCccchhHHhh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAE-HGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~-rGh~V~~~~~~~~~~~~~~ 49 (460)
||++...|+.| .+=...|+++|.+ .||+|.++.++...+.+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 89888888777 6668999999998 5999999999888877754
No 232
>PRK08506 replicative DNA helicase; Provisional
Probab=76.40 E-value=19 Score=35.90 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=34.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
=|++...|+.|-..-.+.+|...++.|+.|.|++.+-..+.+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 356777789999999999999998899999999987554444
No 233
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=76.35 E-value=4.2 Score=37.45 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=37.6
Q ss_pred ccceeeccChhhhhHhhhc----CCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLSM----GVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~~----GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+-||-||+++++.. ++|++.+-. . .+|.. ..++.+++.++|.++++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-------------G-~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH-------------G-RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-------------C-Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 4459999999999999763 778888721 1 22322 3457788889998888544
No 234
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=76.19 E-value=12 Score=36.62 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=22.7
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEEc
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAVI 138 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 138 (460)
.+||++|.. +.+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 789999987 446778999999998754
No 235
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=75.66 E-value=49 Score=28.05 Aligned_cols=113 Identities=8% Similarity=0.074 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHh-CCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcC----------------CCCCCCCcCcccH
Q 012594 18 AGPLMKLSTKIAE-HGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIP----------------DGLESHEADRRDL 80 (460)
Q Consensus 18 ~~p~~~La~~L~~-rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------~~~~~~~~~~~~~ 80 (460)
+..+..+++.+.+ .|.++.+-++....+.++.+ .+-+..+- .++......+..+
T Consensus 41 L~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA---------DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~ 111 (183)
T PF02056_consen 41 LEIVERLARRMVEEAGADLKVEATTDRREALEGA---------DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGP 111 (183)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE---------SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC---------CEEEEEeeecchHHHHHHHHHHHHhCCccccccccCc
Confidence 4445577777764 58888888777777777655 55555442 1222200133334
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchH---HHHHHHhC-CceEEEcccchHHH
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA---LEVAEQMG-IARAAVIPYAPASL 145 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~---~~~A~~lg-iP~v~~~~~~~~~~ 145 (460)
..++..++.. +.+.++.+.+++ .-||.-+.+...+.+ ..+.+..+ ++.|.++.++....
T Consensus 112 GG~~~alRti--pv~~~ia~~i~~----~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~ 174 (183)
T PF02056_consen 112 GGFFRALRTI--PVMLDIARDIEE----LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGTR 174 (183)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHH----HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHH
T ss_pred cHHHHHHhhH--HHHHHHHHHHHH----hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHHH
Confidence 4455555433 667888888888 568988888766633 34556676 99999998876543
No 236
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=75.65 E-value=4.4 Score=36.62 Aligned_cols=126 Identities=14% Similarity=0.252 Sum_probs=71.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHH--
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEH-GIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKV-- 83 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~r-Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-- 83 (460)
+++...|+.|-..-++.+|..++.+ |+.|.|++.+-..+.+........ .+++...+..+ .....++...
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~---s~v~~~~i~~g----~l~~~e~~~~~~ 94 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARL---SGVPYNKIRSG----DLSDEEFERLQA 94 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHH---HTSTHHHHHCC----GCHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh---hcchhhhhhcc----ccCHHHHHHHHH
Confidence 4566778999999999999999987 699999999865444432211100 12222111111 0011111111
Q ss_pred -HHHHHhh----------chHHHHHHHHHHhhcCCCCCccEEEeCCCcchH-------------------HHHHHHhCCc
Q 012594 84 -RQSMLTV----------MPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA-------------------LEVAEQMGIA 133 (460)
Q Consensus 84 -~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~-------------------~~~A~~lgiP 133 (460)
...+... ....+.+.++.++... .+.|+||+|.+.... ..+|..++||
T Consensus 95 ~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~--~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 172 (259)
T PF03796_consen 95 AAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG--KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIP 172 (259)
T ss_dssp HHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS--TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc--cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCe
Confidence 1111110 1234555666665543 578999999755411 2378899999
Q ss_pred eEEEcccc
Q 012594 134 RAAVIPYA 141 (460)
Q Consensus 134 ~v~~~~~~ 141 (460)
++.++...
T Consensus 173 vi~~sQln 180 (259)
T PF03796_consen 173 VIALSQLN 180 (259)
T ss_dssp EEEEEEBS
T ss_pred EEEccccC
Confidence 99877554
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=75.65 E-value=5.4 Score=35.96 Aligned_cols=46 Identities=17% Similarity=0.425 Sum_probs=40.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
..++|.-.++.|-..=..+||.+|.++|+.|+|++.+.....+...
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 4788888899999999999999999889999999999888877654
No 238
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=75.62 E-value=8.9 Score=29.73 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=33.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
|+++...+..-|-.-...|+..|.++||+|.++-....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP 39 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 78899999999999999999999999999999965543
No 239
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=75.52 E-value=36 Score=28.91 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=34.4
Q ss_pred EEEEEcC-CC---ccCh-HHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC
Q 012594 6 HVLVIPF-PA---QGHA-GPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD 68 (460)
Q Consensus 6 ~Il~~~~-~~---~gH~-~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (460)
||.++-. |- .|=+ .-.-.|+..|.++||+|++.+.....+.-... ..|++...+|.
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~-------y~gv~l~~i~~ 63 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE-------YNGVRLVYIPA 63 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc-------cCCeEEEEeCC
Confidence 7877764 22 2222 22346677777889999999887654322222 24788877763
No 240
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=75.51 E-value=13 Score=31.04 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=30.4
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 7 VLVIP-FPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 7 Il~~~-~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
|.+.+ -|+.|-..-...||..|+++|++|.++=.+...
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 33444 378999999999999999999999998765433
No 241
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.47 E-value=4.2 Score=37.64 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=39.0
Q ss_pred cccceeeccChhhhhHhhhc----CCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 348 SVACFLSHCGWNSTLEGLSM----GVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 348 ~~~~~I~hgG~~sv~eal~~----GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
.++++|+=||-||++.+... ++|++.+-. . .+|.. ..++.+++.++|+++++++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G-~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT-------------G-HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------C-CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 35669999999999999764 789988821 1 22222 3356788999999998654
No 242
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=75.47 E-value=22 Score=34.80 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=33.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 56677789999999999998887 679999999987554444
No 243
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=75.40 E-value=44 Score=28.36 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=57.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc----c--hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH----M--HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL 80 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (460)
|.+++..+.|-....+.+|-.-.-+|.+|.++-.-. + ...+... ...++|+.++.++.... ...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~-------~~~v~~~~~~~g~tw~~-~~~-- 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF-------GLGVEFHGMGEGFTWET-QDR-- 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh-------ccceeEEecCCceeCCC-cCc--
Confidence 667888888988877777776667777887774221 1 1222221 13688888887776543 111
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
..-. . .....+....+.+.+ .++|+||.|.++.
T Consensus 101 ~~d~-~---aa~~~w~~a~~~l~~----~~ydlviLDEl~~ 133 (198)
T COG2109 101 EADI-A---AAKAGWEHAKEALAD----GKYDLVILDELNY 133 (198)
T ss_pred HHHH-H---HHHHHHHHHHHHHhC----CCCCEEEEehhhH
Confidence 1111 1 222223333344444 8999999998665
No 244
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=75.38 E-value=26 Score=31.54 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=24.9
Q ss_pred CCccEEEeCCCcc------hHHHHHHHhCCceEEEccc
Q 012594 109 EKISCVIADLTVG------WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 109 ~~~D~vv~D~~~~------~~~~~A~~lgiP~v~~~~~ 140 (460)
..||+|++..... .+..+|+.||+|++.+...
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 5699999754332 5688999999999986654
No 245
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=75.03 E-value=18 Score=32.15 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=54.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
++|+++..-+- ...|++.|...++.+++.+....-....... +- ..+.+-
T Consensus 3 ~~ilvlGGT~D-----ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~--------~~--~~~~G~--------------- 52 (257)
T COG2099 3 MRILLLGGTSD-----ARALAKKLAAAPVDIILSSLTGYGAKLAEQI--------GP--VRVGGF--------------- 52 (257)
T ss_pred ceEEEEeccHH-----HHHHHHHhhccCccEEEEEcccccccchhcc--------CC--eeecCc---------------
Confidence 46776654332 4689999999998887776654433222210 11 111110
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchH-------HHHHHHhCCceEEEc
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA-------LEVAEQMGIARAAVI 138 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~-------~~~A~~lgiP~v~~~ 138 (460)
.-.+.+.+++++ .+.|++| |..-+.+ ..+|+..|||++.+.
T Consensus 53 -----l~~e~l~~~l~e-------~~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 53 -----LGAEGLAAFLRE-------EGIDLLI-DATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred -----CCHHHHHHHHHH-------cCCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 012346677777 8999988 5544433 457899999999654
No 246
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.86 E-value=5 Score=36.83 Aligned_cols=53 Identities=17% Similarity=0.062 Sum_probs=37.7
Q ss_pred ccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+-||-||++.++. .++|++.+ ..|..-.. ..++.+++.++++++++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGI-----------------N~G~lGFL---t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGI-----------------HAGHLGFL---TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEE-----------------eCCCcccC---CcCCHHHHHHHHHHHHcCC
Confidence 455999999999998765 47898888 22222222 3457888889999988654
No 247
>CHL00067 rps2 ribosomal protein S2
Probab=74.79 E-value=10 Score=33.55 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=25.6
Q ss_pred CCccEEEeCCCcc--hHHHHHHHhCCceEEEcccchH
Q 012594 109 EKISCVIADLTVG--WALEVAEQMGIARAAVIPYAPA 143 (460)
Q Consensus 109 ~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 143 (460)
..||+||+-...- .+..=|.++|||.|.+..+..-
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 5799777544333 6777799999999998766553
No 248
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=74.79 E-value=24 Score=29.16 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.7
Q ss_pred cCCCccChHHHHHHHHHHHhCCCEEEEE
Q 012594 11 PFPAQGHAGPLMKLSTKIAEHGIKVTFV 38 (460)
Q Consensus 11 ~~~~~gH~~p~~~La~~L~~rGh~V~~~ 38 (460)
+.++.|-..-.+.|+..|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3467888999999999999999999986
No 249
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=74.76 E-value=55 Score=29.01 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=32.6
Q ss_pred EEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 6 HVLVIP-FPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 6 ~Il~~~-~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
.|.|.. -|+-|-..-...||..|+++|++|.++=.+...
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 456665 489999999999999999999999999776543
No 250
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=74.75 E-value=4.9 Score=38.55 Aligned_cols=99 Identities=9% Similarity=0.127 Sum_probs=60.3
Q ss_pred CCCcEEe-eccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeec-CC-CCcc
Q 012594 329 SDRGKLV-EWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFP-DE-NGII 405 (460)
Q Consensus 329 ~~~v~~~-~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~-~~-~~~~ 405 (460)
.+++... ...+..++|..+++ +||-- ++.+.|.+..++|+|......|+.... .|.-..... .+ ...-
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeC
Confidence 4566655 55567789977666 99997 458899999999999888777665221 122222100 00 0123
Q ss_pred CHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHH
Q 012594 406 TRQEIQRQVKALLNDG-GIKANALKMKQMARK 436 (460)
Q Consensus 406 ~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~ 436 (460)
+.++|.++|+.+++++ .++++.++..+++-.
T Consensus 322 ~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 322 NFEELIEAIENIIENPDEYKEKREKFRDKFFK 353 (369)
T ss_dssp SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST
T ss_pred CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC
Confidence 7899999999998766 456777777777754
No 251
>PRK05595 replicative DNA helicase; Provisional
Probab=74.72 E-value=9.9 Score=37.53 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=33.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
|++...|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 55677789999999999999876 679999999987554444
No 252
>PRK08760 replicative DNA helicase; Provisional
Probab=74.55 E-value=11 Score=37.48 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=33.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAE-HGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~-rGh~V~~~~~~~~~~~~ 47 (460)
=|++...|+.|-..-.+.+|...+. .|+.|.|++.+-..+.+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 3567777999999999999998874 59999999887554433
No 253
>PRK08006 replicative DNA helicase; Provisional
Probab=74.39 E-value=18 Score=36.01 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=32.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
|++..-|+.|-..-.+.+|...+ +.|+.|.|++.+-..+.+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 56677799999999999999987 469999999887544333
No 254
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.27 E-value=48 Score=29.21 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhcCCCCCccEEEeCCCcc---hHHHHHHHhCCceEE
Q 012594 92 PGCLRNLIEKVNKSNDCEKISCVIADLTVG---WALEVAEQMGIARAA 136 (460)
Q Consensus 92 ~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~ 136 (460)
...++.+++.|++ .++.+.|..++ -+..+|...|||++.
T Consensus 137 ~~aM~~~m~~Lk~------r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALKE------RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHHH------CCeEEEcccccccchhhhhHhhcCCceee
Confidence 5566777888754 78999998777 345678999999994
No 255
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=74.26 E-value=46 Score=27.12 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=71.9
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCccccee
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFL 353 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I 353 (460)
.|-|-+|| ..+....++....|+..+..+-..+.+. ...|+.+. .++. -+.+-.++.||
T Consensus 2 ~V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~----------~~~~---~~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGS--TSDLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLL----------EFVK---EYEARGADVII 60 (150)
T ss_dssp EEEEEESS--GGGHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHH----------HHHH---HTTTTTESEEE
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHH----------HHHH---HhccCCCEEEE
Confidence 46666777 3477888889999998887665444422 22333322 1111 11112234488
Q ss_pred eccChh----hhhHhhhcCCceeeccccchhhhhHH----HHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChHHHH
Q 012594 354 SHCGWN----STLEGLSMGVPFLCWPYFADQYQNRN----YIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGGIKA 425 (460)
Q Consensus 354 ~hgG~~----sv~eal~~GvP~i~~P~~~dQ~~~a~----~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 425 (460)
.=.|.. ++..++- -.|+|.+|....+..... .++-=-|+++..-.. ++..++..++-.|-.+ .|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa~-~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILAL-KDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHHT-T-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHhc-CCHHHHH
Confidence 777753 3444443 799999998766442221 111101555444211 1334455555555333 4788999
Q ss_pred HHHHHHHHHHH
Q 012594 426 NALKMKQMARK 436 (460)
Q Consensus 426 ~a~~l~~~~~~ 436 (460)
+.+...++.++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99888888775
No 256
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=74.10 E-value=27 Score=34.41 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEEc
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAVI 138 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 138 (460)
.+||++|... ....+|+++|||++.++
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 7899999875 46788999999998644
No 257
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=73.53 E-value=21 Score=31.58 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=24.5
Q ss_pred CccEEE-eCCCcc-hHHHHHHHhCCceEEEcccch
Q 012594 110 KISCVI-ADLTVG-WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 110 ~~D~vv-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (460)
-||+++ .|+..- -|..=|+++|||+|.+.....
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 499665 566444 777789999999999876554
No 258
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=73.26 E-value=59 Score=30.54 Aligned_cols=100 Identities=12% Similarity=0.156 Sum_probs=58.2
Q ss_pred CEEEEEcCCCcc--C---hHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 5 PHVLVIPFPAQG--H---AGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 5 ~~Il~~~~~~~g--H---~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
.-|+|.|+.+.| - ..-+.+|++.|.++|..|.+++++...+..++.... ..-....+.+
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~-----~~~~~~~l~g----------- 238 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL-----LPGELRNLAG----------- 238 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh-----CCcccccCCC-----------
Confidence 345566644333 1 224778999999889999998887665544322100 0000111110
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEccc
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (460)
...+.++...+ .+-|++|+. ......+|..+|+|.|.+...
T Consensus 239 ------------~~sL~el~ali------~~a~l~I~~--DSGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 239 ------------ETSLDEAVDLI------ALAKAVVTN--DSGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred ------------CCCHHHHHHHH------HhCCEEEee--CCHHHHHHHHcCCCEEEEECC
Confidence 01133344444 337999987 467788999999999987653
No 259
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.19 E-value=5.7 Score=36.56 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=38.4
Q ss_pred ccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+=||-||++.+.. .++|++.+-. . .+|.. ..++.+++.++|++++++.
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~-------------G-~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINT-------------G-RLGFL------ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEec-------------C-CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 455999999999999877 4789988821 1 12222 3457888999999998654
No 260
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=72.95 E-value=17 Score=35.37 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
|+++-.++.|-..-...||..|+++|++|.+++.+.++
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 45666679999999999999999999999999998765
No 261
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=72.91 E-value=70 Score=29.03 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.1
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 4 EPHVLVIPF--PAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 4 ~~~Il~~~~--~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
..|++.++. |+-|-..-...||..|++.|++|.++=.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 456665554 5778788888999999999999999944
No 262
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=72.33 E-value=20 Score=30.34 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC--CCCCCC---cCcccHHHHHHHHHhhchH
Q 012594 19 GPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD--GLESHE---ADRRDLHKVRQSMLTVMPG 93 (460)
Q Consensus 19 ~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (460)
.-...||+.|.+.|+++. ++....+.+++. |+.+..+.+ +++... ..+-++.-.-..+.+.-.+
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~ 79 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNE 79 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCCh
Confidence 447899999999999984 676788889888 777766642 222110 0222222222222222112
Q ss_pred HHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 94 CLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 94 ~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
.-. -++...- ...|+||++.+.+
T Consensus 80 ~~~-~~~~~~i----~~idlVvvNlYpF 102 (187)
T cd01421 80 EHK-DLEEHGI----EPIDLVVVNLYPF 102 (187)
T ss_pred hHH-HHHHcCC----CCeeEEEEcccCh
Confidence 111 3333322 7899999996444
No 263
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=72.25 E-value=61 Score=34.10 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCCCEEEEEcCC-CccChHHHHHHHHHHHhCCCEEEEEe
Q 012594 1 MDREPHVLVIPFP-AQGHAGPLMKLSTKIAEHGIKVTFVS 39 (460)
Q Consensus 1 m~~~~~Il~~~~~-~~gH~~p~~~La~~L~~rGh~V~~~~ 39 (460)
|++ .|++.+.. ..|-..-.+.|++.|.++|.+|.++=
T Consensus 1 m~k--~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 1 MSR--SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CCc--EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 554 67766554 68999999999999999999999975
No 264
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.11 E-value=40 Score=29.91 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=34.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCccchhHHh
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEH-GIKVTFVSTEHMHAKIT 48 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~r-Gh~V~~~~~~~~~~~~~ 48 (460)
+++...|+.|-..-.+.++..++.+ |+.|.|++.+...+.+.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 4566667999999999999998877 99999999887555443
No 265
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=71.88 E-value=6.3 Score=33.47 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=35.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++......
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~ 43 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTD 43 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHH
Confidence 788888888888887789999999999999999987655433
No 266
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=71.75 E-value=13 Score=34.79 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=58.9
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHH-
Q 012594 10 IPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSML- 88 (460)
Q Consensus 10 ~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 88 (460)
++.|+.|-.=-...|++.|.++|++|.+++...-.+ .. + ....+..+-+..+ ..+....+.+..-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~-~~-----------~-~~~~v~~~~~~~~-~GDEp~lla~~~~~ 108 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK-SK-----------G-EPILVSDGSDAEE-VGDEPLLLARKLPV 108 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC-CC-----------C-CeEEEeCCCChhh-hcCHHHHHHHhcCC
Confidence 456799999999999999999999999999844322 11 1 1122222222222 3333332222211
Q ss_pred --hhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceE
Q 012594 89 --TVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARA 135 (460)
Q Consensus 89 --~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v 135 (460)
.......+.....++. ..+|+||.|-.+- -..+++.+.|=++
T Consensus 109 ~V~V~~dR~~~~~~~~~~----~~~dviilDDGfQ-h~~L~rDl~Ivl~ 152 (326)
T PF02606_consen 109 PVIVGPDRVAAARAALKE----FPADVIILDDGFQ-HRRLKRDLDIVLV 152 (326)
T ss_pred cEEEeCcHHHHHHHHHHH----CCCCEEEEcCCcc-cccccCCcEEEEE
Confidence 1122333333333333 6699999997544 3345566665433
No 267
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.43 E-value=5.6 Score=36.13 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=37.2
Q ss_pred ccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChH
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGG 422 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 422 (460)
++++|+=||-||++.+.+ .++|++.+-. . .+|... .++.+++.+.+.+++++.+
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~-------------G-~lGFL~------~~~~~~~~~~l~~~~~~g~ 100 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINR-------------G-NLGFLT------DIDPKNAYEQLEACLERGE 100 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------C-CCcccc------cCCHHHHHHHHHHHHhcCC
Confidence 445999999999998754 3789888721 1 234333 3467888888888886333
No 268
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=71.19 E-value=59 Score=32.90 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=65.0
Q ss_pred cChHHHHHHH-HHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCC-------------CCCC--cCccc
Q 012594 16 GHAGPLMKLS-TKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGL-------------ESHE--ADRRD 79 (460)
Q Consensus 16 gH~~p~~~La-~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------~~~~--~~~~~ 79 (460)
|++.-.+.+| +.+.+.|++|.+.-. .+.+.+++.. .+.++.|+... ...- ....+
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~--------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~ 107 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRL--------SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQD 107 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhC--------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCc
Confidence 5666667777 446666888765443 5667776652 45555554211 0000 01111
Q ss_pred HHHHHHHHHhh-----------chHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEccc
Q 012594 80 LHKVRQSMLTV-----------MPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (460)
...-.+.+.+. -.......+..+++ ..+++||+|. .+..+|+++|++.|.+.+.
T Consensus 108 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~----~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 108 TPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA----RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred ccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH----CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 11112222111 14456778888888 8899999995 4678899999999998775
No 269
>PRK00784 cobyric acid synthase; Provisional
Probab=70.88 E-value=34 Score=34.29 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=28.4
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
+|++... ...|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 5666644 4689999999999999999999987633
No 270
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.63 E-value=6.6 Score=36.22 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=38.5
Q ss_pred ccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+=||-||++.+.. .++|++.+-. . .+|... .++.+++.++|+++++++
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~-------------G-~lGFL~------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQ-------------G-HLGFLT------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEec-------------C-CCeEee------ccCHHHHHHHHHHHHcCC
Confidence 455999999999999864 4789988821 1 233333 357888999999998654
No 271
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=70.32 E-value=56 Score=27.16 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=33.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
+++.-.++.|-......++..|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56667789999999999999999999999999987654
No 272
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=70.29 E-value=72 Score=27.66 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=62.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQS 86 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (460)
|++-..|+.|-.-..-.||++|.+++|+|..++.+.... +. ..+.++ ..-+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~---------------i~---~DEslp----------i~ke~ 55 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG---------------IL---WDESLP----------ILKEV 55 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhh---------------ee---cccccc----------hHHHH
Confidence 445556899999999999999999999998766532211 11 111111 11122
Q ss_pred HHhhchHH-HHHHHHHHhhcCCCCCccEEEeCCCcc-hH-----HHHHHHhCCceEEEcccchHHHH
Q 012594 87 MLTVMPGC-LRNLIEKVNKSNDCEKISCVIADLTVG-WA-----LEVAEQMGIARAAVIPYAPASLA 146 (460)
Q Consensus 87 ~~~~~~~~-~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~-----~~~A~~lgiP~v~~~~~~~~~~~ 146 (460)
+....... .+-+..+ .+--+||+|.... -+ ...|..+..++.++....+..+.
T Consensus 56 yres~~ks~~rlldSa-------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc 115 (261)
T COG4088 56 YRESFLKSVERLLDSA-------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTC 115 (261)
T ss_pred HHHHHHHHHHHHHHHH-------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHH
Confidence 22222222 2322233 3335899998665 22 45688889999888777665443
No 273
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=70.21 E-value=56 Score=28.55 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.9
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEe
Q 012594 7 VLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVS 39 (460)
Q Consensus 7 Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~ 39 (460)
|++.+. ...|-..-...|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 444433 478999999999999999999998864
No 274
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=69.99 E-value=20 Score=32.58 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=31.7
Q ss_pred EEeeccCchhhcCCCcccceeeccChhhhhHhhhcCCceeeccc
Q 012594 333 KLVEWAPQEKVLGHPSVACFLSHCGWNSTLEGLSMGVPFLCWPY 376 (460)
Q Consensus 333 ~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~ 376 (460)
.+..-.+-.+++.+++. |||-. +++-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTIN-STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHcCCceEEecC
Confidence 34466777789977665 88874 3477999999999999864
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=69.84 E-value=33 Score=33.54 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=33.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAK 46 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~ 46 (460)
|+++..++.|-..-...||..|. ++|+.|.+++.+.++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 44556679999999999999997 68999999999876543
No 276
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=69.82 E-value=62 Score=31.11 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCEEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 4 EPHVLVIP-FPAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 4 ~~~Il~~~-~~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
..+|+|+- .|..|. .+|+.|.++||+|++....
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 35888886 677774 6889999999999999764
No 277
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=69.78 E-value=37 Score=33.26 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=24.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
|+.++..+.. .+.+++.|.+-|-+|+.+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 6666665554 788899999999999988665
No 278
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=69.63 E-value=68 Score=29.26 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=32.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
|+|+..++.|-..-...||..|+++|++|.++..+.+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4566667999999999999999999999999998864
No 279
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=69.39 E-value=5.8 Score=33.59 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=33.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~ 49 (460)
||++...|+.|-+.- ..|.+.|.++|++|.++.|+.....+..
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 466666666665554 7899999999999999999888877743
No 280
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.26 E-value=7.4 Score=36.04 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=38.8
Q ss_pred ccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+=||-||++.+.. .++|++.+.. . .+|... .++.+++.++|++++++.
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~-------------G-~lGFL~------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNL-------------G-HVGFLA------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEec-------------C-CCceec------cCCHHHHHHHHHHHHcCC
Confidence 455999999999999865 3889998832 1 233333 346788889999998654
No 281
>PRK06321 replicative DNA helicase; Provisional
Probab=69.12 E-value=36 Score=33.87 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=33.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
|++...|+.|-..-.+.+|...+ +.|+.|.|++.+-..+.+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 56677799999999999999987 469999999887544444
No 282
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=69.02 E-value=50 Score=30.34 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 22 MKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 22 ~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
.++|..|+++|++|.++++++.+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l~ 28 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSLS 28 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 46888999999999999998765433
No 283
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.97 E-value=8.2 Score=35.07 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=37.8
Q ss_pred ccceeeccChhhhhHhhh-cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS-MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~-~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+=||-||++.+.. +..|++.+-. . .+|.. ..++.+++.++|++++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G-~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINM-------------G-GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------C-CCccC------cccCHHHHHHHHHHHHcCC
Confidence 455999999999999987 4568877711 1 22222 3357888999999999654
No 284
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=68.95 E-value=15 Score=36.11 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEc
Q 012594 96 RNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVI 138 (460)
Q Consensus 96 ~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 138 (460)
.++.+.+++ .+||+||.+. ....+|+++|+|++.++
T Consensus 361 ~el~~~i~~----~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKE----EPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhc----cCCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 344444444 8899999985 34678899999998543
No 285
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=68.82 E-value=6.1 Score=34.96 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=27.9
Q ss_pred CEEEEEcCCCccChHHH------------HHHHHHHHhCCCEEEEEeCc
Q 012594 5 PHVLVIPFPAQGHAGPL------------MKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~------------~~La~~L~~rGh~V~~~~~~ 41 (460)
|||++-.+|+.=.+.|. .+||++|.++||+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 36777777766666553 48889999999999999754
No 286
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=68.68 E-value=58 Score=32.63 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhh
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~ 49 (460)
+.-+++.-.|+.|--.-.++++.+.+++|..|.+++.+...+.+..
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 3456777778999999999999999999999999999887655533
No 287
>PRK09620 hypothetical protein; Provisional
Probab=68.67 E-value=6.9 Score=34.59 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCccChHHH------------HHHHHHHHhCCCEEEEEeCc
Q 012594 4 EPHVLVIPFPAQGHAGPL------------MKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~------------~~La~~L~~rGh~V~~~~~~ 41 (460)
+.||++-.+|+.=.+.|. ..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457887777765554442 48999999999999999764
No 288
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=68.61 E-value=11 Score=32.55 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=55.7
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc-hhHH---hhccCcccc--CCCCeEEEEcCCCCCCCCcCcccHHH
Q 012594 9 VIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM-HAKI---TASMPQKAE--QSSLITMVSIPDGLESHEADRRDLHK 82 (460)
Q Consensus 9 ~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~-~~~~---~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (460)
+----+.|--.-...++..+...||.|++++++.. ++.+ .+....-.. ..-.+.|.++.- .+.
T Consensus 33 IEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~--~~~--------- 101 (235)
T COG2874 33 IEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL--EPV--------- 101 (235)
T ss_pred EECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecc--ccc---------
Confidence 33334778888899999999999999999999753 3333 222100000 001233333211 111
Q ss_pred HHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchH
Q 012594 83 VRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWA 123 (460)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~ 123 (460)
.+-....+..++.+++.++. ++.|+||.|.+...+
T Consensus 102 --~~~~~~~~~~L~~l~~~~k~----~~~dViIIDSls~~~ 136 (235)
T COG2874 102 --NWGRRSARKLLDLLLEFIKR----WEKDVIIIDSLSAFA 136 (235)
T ss_pred --ccChHHHHHHHHHHHhhHHh----hcCCEEEEecccHHh
Confidence 11112233445666666665 899999999876633
No 289
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=68.51 E-value=34 Score=28.38 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=22.7
Q ss_pred CCcccceeeccChh------hhhHhhhcCCceeecc
Q 012594 346 HPSVACFLSHCGWN------STLEGLSMGVPFLCWP 375 (460)
Q Consensus 346 ~~~~~~~I~hgG~~------sv~eal~~GvP~i~~P 375 (460)
.+.+ +++|+|.| .+.+|...++|||++.
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444 88888855 6789999999999996
No 290
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.22 E-value=7.6 Score=35.74 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=37.6
Q ss_pred ccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+=||-||++.++. +++|++.+-.. .+|.. ..++.+++.+++++++++.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFL------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 455999999999999974 37888887221 12332 2346788999999998644
No 291
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=68.13 E-value=76 Score=27.10 Aligned_cols=102 Identities=9% Similarity=0.057 Sum_probs=53.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC--EEEEEeCcc-ch---hHHhhccCccccCCCCeEEEEcCC-CCCCCCcCc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGI--KVTFVSTEH-MH---AKITASMPQKAEQSSLITMVSIPD-GLESHEADR 77 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh--~V~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ 77 (460)
+||+++..+..+=+. +|.+.+.+.++ +|.++.++. .. +..++. ++.++.++. .+..
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~---------gip~~~~~~~~~~~----- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLERAAQA---------GIPTFVLSLKDFPS----- 63 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHHHHHc---------CCCEEEECccccCc-----
Confidence 378888866555444 56666766555 677654543 22 333343 676655432 1110
Q ss_pred ccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEccc
Q 012594 78 RDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 140 (460)
.......+.+.++. .++|++|+-.+.. ....+-+.....++-++++
T Consensus 64 ----------~~~~~~~~~~~l~~-------~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 64 ----------REAFDQAIIEELRA-------HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred ----------hhhhhHHHHHHHHh-------cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
Confidence 01112223444444 8899999875433 3334444444456655554
No 292
>PRK09165 replicative DNA helicase; Provisional
Probab=68.07 E-value=27 Score=35.03 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=32.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC---------------CCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEH---------------GIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~r---------------Gh~V~~~~~~~~~~~~ 47 (460)
|++...|+.|-..-.+.+|...+.+ |..|.|++.+-..+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5667778999999999999888753 7899999987655444
No 293
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=67.66 E-value=43 Score=30.27 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCC
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLES 72 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 72 (460)
++||+++.+++...-. ..+..|.++|.+|.++......+.. .....++..-+|++...
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~--------~~l~~~DgLvipGGfs~ 60 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAER--------KSVSDYDCLVIPGGFSA 60 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccc--------cchhhCCEEEECCCCCc
Confidence 4589999987776443 5578888899999998764321110 11136788888887643
No 294
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.48 E-value=9.5 Score=34.49 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=36.6
Q ss_pred ccceeeccChhhhhHhhhc-----CCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLSM-----GVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~~-----GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|+=||-||++.++.. .+|++.+-.. |..-.. ..++.+++.+++.++++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~----------------G~lGFL---~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTK----------------DQLGFY---CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecC----------------CCCeEc---ccCCHHHHHHHHHHHHcCC
Confidence 3459999999999999874 5677666220 222221 3356788888998888654
No 295
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=67.47 E-value=1.1e+02 Score=28.48 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=56.6
Q ss_pred CCcEE-eeccCch---hhcCCCcccceeec--cChhhhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCC
Q 012594 330 DRGKL-VEWAPQE---KVLGHPSVACFLSH--CGWNSTLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENG 403 (460)
Q Consensus 330 ~~v~~-~~~~p~~---~ll~~~~~~~~I~h--gG~~sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~ 403 (460)
+++.+ ++++|.+ ++|+.+++..|+|+ =|.||+.-.++.|+|+++--.. +.+.. +.+ .|+-+..+. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n---~fwqd-l~e-~gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDN---PFWQD-LTE-QGLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCC---chHHH-HHh-CCCeEEecC---C
Confidence 67765 4888765 59999998777775 4899999999999999887322 22222 334 488887665 6
Q ss_pred ccCHHHHHHHHHHH
Q 012594 404 IITRQEIQRQVKAL 417 (460)
Q Consensus 404 ~~~~~~l~~~i~~~ 417 (460)
.++...+.++=+++
T Consensus 278 ~L~~~~v~e~~rql 291 (322)
T PRK02797 278 DLDEDIVREAQRQL 291 (322)
T ss_pred cccHHHHHHHHHHH
Confidence 77888777764443
No 296
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=66.99 E-value=9.4 Score=32.18 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=23.2
Q ss_pred CCCcccceeeccChhhhhHhhhcCCceeeccccc
Q 012594 345 GHPSVACFLSHCGWNSTLEGLSMGVPFLCWPYFA 378 (460)
Q Consensus 345 ~~~~~~~~I~hgG~~sv~eal~~GvP~i~~P~~~ 378 (460)
.+..++.+|++||......... ++|+|-+|...
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4466777999999999998887 99999999853
No 297
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=66.58 E-value=42 Score=31.69 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=60.9
Q ss_pred CEEEEEcCCCcc-----ChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 5 PHVLVIPFPAQG-----HAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 5 ~~Il~~~~~~~g-----H~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
..|+|.|..+.| -..-+..|++.|.++|..|.+..++...+..++... .+..... +.
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~~---l~-------- 237 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAVI---LA-------- 237 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCccc---cC--------
Confidence 467777762332 233478999999999999999888754444333210 1110000 10
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccch
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~ 142 (460)
....+.++...+ ...|++|+. .+....+|..+|.|.|.+.....
T Consensus 238 -----------~k~sL~e~~~li------~~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~t~ 281 (334)
T COG0859 238 -----------GKTSLEELAALI------AGADLVIGN--DSGPMHLAAALGTPTIALYGPTS 281 (334)
T ss_pred -----------CCCCHHHHHHHH------hcCCEEEcc--CChHHHHHHHcCCCEEEEECCCC
Confidence 011133333333 237888876 46778999999999999875554
No 298
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=66.45 E-value=59 Score=28.17 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=24.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
+++|+-.|-.| ..||..|++.||+|++.+....
T Consensus 3 ~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 3 IIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred EEEEeccChHH-----HHHHHHHHhCCCeEEEecCCCh
Confidence 66666555443 5789999999999999976543
No 299
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=66.37 E-value=13 Score=33.13 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCC---cCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCC-cEEeeccCc---hhh
Q 012594 271 VGSVIYVAFGSV---AVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDR-GKLVEWAPQ---EKV 343 (460)
Q Consensus 271 ~~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~---~~l 343 (460)
+++.|.+..|+. ..++.+.+.++++.+.+.+.++++..+.... ....-+.+.+..+.+ +.+.+-.+- ..+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ---EKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH---HHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH---HHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 456888888875 4567888999999998777665544432200 000111111111222 234333332 247
Q ss_pred cCCCcccceeeccChhhhhHhhhcCCceeec
Q 012594 344 LGHPSVACFLSHCGWNSTLEGLSMGVPFLCW 374 (460)
Q Consensus 344 l~~~~~~~~I~hgG~~sv~eal~~GvP~i~~ 374 (460)
+.++++ +|+. ..|.+-=|.+.|+|+|++
T Consensus 181 i~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 181 ISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 767665 8876 678889999999999998
No 300
>PRK08840 replicative DNA helicase; Provisional
Probab=66.08 E-value=32 Score=34.12 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=33.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
|++..-|+.|-..-.+.+|...+ +.|+.|.|++.+-..+.+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 56677799999999999999987 469999999987544444
No 301
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.08 E-value=4.3 Score=33.47 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=30.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc-chhHHhhc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH-MHAKITAS 50 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~-~~~~~~~~ 50 (460)
||.++-.|.+|+ ++|..|+++||+|++.+.+. ..+.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDEEQIEEINET 41 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCHHHHHHHHHH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 577777777765 78999999999999999875 33444444
No 302
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.06 E-value=78 Score=26.46 Aligned_cols=96 Identities=11% Similarity=0.148 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCccc-hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHH
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEHM-HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLI 99 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (460)
+..|.+...++|..|.++...+. .+.+.+.. ...++++++.....++. -....++++
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l---~~~yP~l~ivg~~~g~f-------------------~~~~~~~i~ 94 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANL---RRRYPGLRIVGYHHGYF-------------------DEEEEEAII 94 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH---HHHCCCeEEEEecCCCC-------------------ChhhHHHHH
Confidence 34555555668899999987642 22111111 12336888865443321 112345566
Q ss_pred HHHhhcCCCCCccEEEeCCCcc----hHHHHHHHhCCceEEEcccchH
Q 012594 100 EKVNKSNDCEKISCVIADLTVG----WALEVAEQMGIARAAVIPYAPA 143 (460)
Q Consensus 100 ~~l~~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~~~~~~~~ 143 (460)
+.+++ .+||+|++-...+ |.....+.++.+ +.++...++
T Consensus 95 ~~I~~----~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 95 NRINA----SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 66666 8899999988777 677777888888 555555554
No 303
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=66.03 E-value=52 Score=27.55 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc------hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM------HAKITASMPQKAEQSSLITMVSIPDGLESHEADR 77 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 77 (460)
+..|-+++..+.|-....+.+|-.-+-+|.+|.++-.-.. ...+... +++++.....++.... ..
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l--------~~~~~~~~g~~f~~~~-~~ 73 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL--------PNVEIERFGKGFVWRM-NE 73 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG--------T--EEEE--TT----G-GG
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC--------CeEEEEEcCCcccccC-CC
Confidence 3467888989999999888887777778889988853221 2222222 3588877776554332 11
Q ss_pred ccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 78 RDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
. ... ....+..++...+.+.. .++|+||-|....
T Consensus 74 ~-~~~-----~~~~~~~~~~a~~~i~~----~~~dlvILDEi~~ 107 (172)
T PF02572_consen 74 E-EED-----RAAAREGLEEAKEAISS----GEYDLVILDEINY 107 (172)
T ss_dssp H-HHH-----HHHHHHHHHHHHHHTT-----TT-SEEEEETHHH
T ss_pred c-HHH-----HHHHHHHHHHHHHHHhC----CCCCEEEEcchHH
Confidence 1 111 12222333333444433 8999999997444
No 304
>PRK11519 tyrosine kinase; Provisional
Probab=65.94 E-value=1.4e+02 Score=31.62 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=67.1
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc-cCc---c----------------ccCCCCe
Q 012594 4 EPHVLVIPF--PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS-MPQ---K----------------AEQSSLI 61 (460)
Q Consensus 4 ~~~Il~~~~--~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~-~~~---~----------------~~~~~~~ 61 (460)
+.|+++++. |+-|-..-...||..|+..|++|.++-.+.....+... +.. . ....+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 346766665 68888888999999999999999999554321111110 000 0 0112344
Q ss_pred EEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc----hHHHHHHHhCCceEEE
Q 012594 62 TMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG----WALEVAEQMGIARAAV 137 (460)
Q Consensus 62 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~~ 137 (460)
.+.+-.. ...+...++ ....+.++++.++ .++|+||.|.-.. -+..+++..+..++++
T Consensus 605 ~~lp~g~-------~~~~~~ell------~s~~~~~ll~~l~-----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vv 666 (719)
T PRK11519 605 DLIPRGQ-------VPPNPSELL------MSERFAELVNWAS-----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVA 666 (719)
T ss_pred EEEeCCC-------CCCCHHHHh------hHHHHHHHHHHHH-----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEE
Confidence 4433221 111222211 1244677777765 4799999996432 2456778887766654
Q ss_pred cc
Q 012594 138 IP 139 (460)
Q Consensus 138 ~~ 139 (460)
..
T Consensus 667 r~ 668 (719)
T PRK11519 667 RY 668 (719)
T ss_pred eC
Confidence 43
No 305
>PRK13768 GTPase; Provisional
Probab=65.91 E-value=12 Score=33.79 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=31.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
-+++...++.|-..-...++..|+++|++|.++..++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 45566667889999999999999999999999987653
No 306
>PRK14098 glycogen synthase; Provisional
Probab=65.62 E-value=9.8 Score=38.11 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=30.1
Q ss_pred CCEEEEEcCC------CccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 4 EPHVLVIPFP------AQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 4 ~~~Il~~~~~------~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
++||++++.- +.|=-...-+|.++|+++||+|.++.+.
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4799988742 4455556778999999999999999884
No 307
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=65.60 E-value=8.3 Score=32.52 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKIT 48 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~ 48 (460)
||++...|+.|= .-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~~a-~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIAA-YKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHHH-HHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 677777676554 455699999999999999999987666654
No 308
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.60 E-value=11 Score=34.06 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=37.4
Q ss_pred cccceeeccChhhhhHhhh-cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 348 SVACFLSHCGWNSTLEGLS-MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 348 ~~~~~I~hgG~~sv~eal~-~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
+++++|+=||-||++.|+. +++|++.+-. . .+|.. ..++.+++.++++++++..
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~~~Pilgin~-------------G-~lGfl------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKVGTPLVGFKA-------------G-RLGFL------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCEEEEeC-------------C-CCccc------cccCHHHHHHHHHHHHcCC
Confidence 3455999999999999876 5888887721 1 12222 2356788888888888643
No 309
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=65.41 E-value=96 Score=27.26 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=27.9
Q ss_pred EEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEE
Q 012594 6 HVLVIPFP--AQGHAGPLMKLSTKIAEHGIKVTFV 38 (460)
Q Consensus 6 ~Il~~~~~--~~gH~~p~~~La~~L~~rGh~V~~~ 38 (460)
+.+|++.- .-|-..-...|++.|+++|++|.+.
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence 56666643 7799999999999999999999987
No 310
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=65.10 E-value=35 Score=30.34 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCc-cChHH---HHHHHHHHHhCCCEEEEEeCccc--hhHHhhccCccccCCCCeE--EEEcCCCCCCCCc
Q 012594 4 EPHVLVIPFPAQ-GHAGP---LMKLSTKIAEHGIKVTFVSTEHM--HAKITASMPQKAEQSSLIT--MVSIPDGLESHEA 75 (460)
Q Consensus 4 ~~~Il~~~~~~~-gH~~p---~~~La~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~ 75 (460)
+..|+|.++.+. .-..| +..|++.|.++|.+|.++..+.. .+.+..... +.+ +..+.+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------ 171 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-------GLQNPVINLAGK------ 171 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-------THTTTTEEETTT------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-------hcccceEeecCC------
Confidence 346777776544 22223 58999999999988888888766 222222210 111 1122110
Q ss_pred CcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcccch
Q 012594 76 DRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~ 142 (460)
..+.++...+ .+.|++|+. ......+|..+|+|.|.+.....
T Consensus 172 -----------------~~l~e~~ali------~~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~t~ 213 (247)
T PF01075_consen 172 -----------------TSLRELAALI------SRADLVIGN--DTGPMHLAAALGTPTVALFGPTN 213 (247)
T ss_dssp -----------------S-HHHHHHHH------HTSSEEEEE--SSHHHHHHHHTT--EEEEESSS-
T ss_pred -----------------CCHHHHHHHH------hcCCEEEec--CChHHHHHHHHhCCEEEEecCCC
Confidence 1133344444 337999977 46688999999999999875543
No 311
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=64.80 E-value=11 Score=36.40 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhh
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~ 49 (460)
|-++.||++...|+. ...=...+.+.|.++|++|.++.++.....+..
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 334568988887766 455678899999999999999999887776643
No 312
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=64.59 E-value=8.6 Score=37.93 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCccChHHH------------HHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPFPAQGHAGPL------------MKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~------------~~La~~L~~rGh~V~~~~~~~ 42 (460)
+.||++-.+|+.=.+.|. .+||+++..+|++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 458999998988888875 489999999999999999765
No 313
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=64.46 E-value=71 Score=31.43 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=52.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVR 84 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (460)
.|+++...+ .....+++.|.+.|-+|..+.+....+..+.. +.+ .....+.
T Consensus 312 krvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~----------------~~~----~~~~~D~---- 362 (432)
T TIGR01285 312 KKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL----------------PVE----TVVIGDL---- 362 (432)
T ss_pred CEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC----------------CcC----cEEeCCH----
Confidence 467666522 36688888899999998887765543322111 000 0011111
Q ss_pred HHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEE
Q 012594 85 QSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAV 137 (460)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 137 (460)
..+.++++. .++|++|.+. ....+|+++|||++-+
T Consensus 363 --------~~l~~~i~~-------~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 --------EDLEDLACA-------AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred --------HHHHHHHhh-------cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 112444444 7899999874 4577899999999853
No 314
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=64.42 E-value=48 Score=29.93 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=32.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
-+++.-.|+.|-..-.++++...+++|..|.|++.+..
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 35666678999999999999998889999999998743
No 315
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=64.19 E-value=9.7 Score=34.09 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=25.1
Q ss_pred EEEEEcC---C---CccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 6 HVLVIPF---P---AQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 6 ~Il~~~~---~---~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
||+++++ | +.|=-...-.|+++|+++||+|+++++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 5666663 1 33444557789999999999999998854
No 316
>CHL00175 minD septum-site determining protein; Validated
Probab=63.96 E-value=1.2e+02 Score=27.72 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=30.4
Q ss_pred CEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 5 PHVLVIPF--PAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 5 ~~Il~~~~--~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
.||+.+.. |+-|-..-...||..|+++|++|.++=.+.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35654443 688999999999999999999999985543
No 317
>PRK06904 replicative DNA helicase; Validated
Probab=63.75 E-value=33 Score=34.13 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=33.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAE-HGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~-rGh~V~~~~~~~~~~~~ 47 (460)
|++...|+.|-..-.+.+|...+. .|+.|.|++.+-..+.+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566777999999999999998875 59999999987554444
No 318
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=63.62 E-value=15 Score=29.19 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
|.++.-| ++..+...-+.|..-++...+.+|++|++..|---...+.+.
T Consensus 1 ~~~k~~I-Il~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K~ 49 (137)
T COG2210 1 MDKKLGI-ILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRKE 49 (137)
T ss_pred CCceEEE-EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhcc
Confidence 3443333 344488899999999999999999999999885555555443
No 319
>PRK07004 replicative DNA helicase; Provisional
Probab=63.47 E-value=35 Score=33.87 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=33.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
|++...|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 56677799999999999999886 469999999887554444
No 320
>PRK07773 replicative DNA helicase; Validated
Probab=63.10 E-value=26 Score=38.08 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=33.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEH-GIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~r-Gh~V~~~~~~~~~~~~ 47 (460)
|++..-|+.|-..-.+.+|...+.+ |..|.|++.+-..+.+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 6677779999999999999998754 8999999987655444
No 321
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=63.09 E-value=12 Score=33.29 Aligned_cols=45 Identities=4% Similarity=-0.087 Sum_probs=34.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~ 50 (460)
||++.-.|+.+=+.-...|.+.|.++ ||+|.++.++...+.+...
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 35555555555557899999999999 9999999998877766443
No 322
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=62.54 E-value=14 Score=36.55 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=39.1
Q ss_pred cccceeeccChhhhhHhhhc----CCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 348 SVACFLSHCGWNSTLEGLSM----GVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 348 ~~~~~I~hgG~~sv~eal~~----GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
.++++|+=||-||++.|... ++|++.+ | -. .+|.. ..++.+++.++|.++++++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGI--------N-----~G-~LGFL------t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPF--------S-----MG-SLGFM------TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEE--------e-----CC-Cccee------cccCHHHHHHHHHHHHcCC
Confidence 35669999999999999763 5788777 2 11 24443 3357889999999999654
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=62.54 E-value=85 Score=30.16 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=33.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
+++.-.|+.|--.-++.++..++++|..|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45555679999999999999999999999999887655444
No 324
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=62.47 E-value=18 Score=30.45 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=34.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
+++...|+.|-..-.+.++.+.++.|..|.|++.+...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 46667789999999999999999999999999987765544
No 325
>PRK05636 replicative DNA helicase; Provisional
Probab=62.44 E-value=23 Score=35.55 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=32.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
|++...|+.|-..-.+.+|...+ +.|..|.|++.+-..+.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 56677789999999999998876 568999999876544333
No 326
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=62.38 E-value=25 Score=33.24 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCC-EEEEEeC
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGI-KVTFVST 40 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh-~V~~~~~ 40 (460)
.+||+++-.|+.| ..+|+.|+..|+ +++++=.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 4589999888766 678999999998 6776644
No 327
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=62.13 E-value=53 Score=30.45 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=32.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
.|+|.-.++.|-..-+..|+..|.++|+.|.++..+...
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 455666689999999999999999999999999877543
No 328
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=61.93 E-value=37 Score=29.79 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=34.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKIT 48 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~ 48 (460)
-+++...|+.|-..-.+.++..-+++|+.|.+++.....+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 4556666789998888889888878899999999987665553
No 329
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=61.93 E-value=23 Score=29.47 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHh-CCCEEEEE
Q 012594 17 HAGPLMKLSTKIAE-HGIKVTFV 38 (460)
Q Consensus 17 H~~p~~~La~~L~~-rGh~V~~~ 38 (460)
|.....+|+++|.+ +|.++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 77888999999987 45444433
No 330
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=61.48 E-value=16 Score=33.83 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
|||+|+-.|..| ..+|..|+++||+|+++..+...+.+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRER 41 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHhC
Confidence 478888877776 45788899999999999884444555444
No 331
>PLN02929 NADH kinase
Probab=61.33 E-value=12 Score=34.51 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=42.6
Q ss_pred ccceeeccChhhhhHhhh---cCCceeeccccc------hhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhc
Q 012594 349 VACFLSHCGWNSTLEGLS---MGVPFLCWPYFA------DQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLN 419 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~---~GvP~i~~P~~~------dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~ 419 (460)
++++|+-||-||++.|.. .++|++++-... ++.++.-. +. ...|.... ++.+++.+.|+++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~~il~ 136 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLDDVLF 136 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHHHHHc
Confidence 455999999999999854 478998885532 12222211 11 13555542 468889999999997
Q ss_pred Ch
Q 012594 420 DG 421 (460)
Q Consensus 420 ~~ 421 (460)
+.
T Consensus 137 g~ 138 (301)
T PLN02929 137 GR 138 (301)
T ss_pred CC
Confidence 54
No 332
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=61.31 E-value=1e+02 Score=26.05 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc-----ch-hHHhhccCccccCCCCeEEEEcCCCCCCCCc
Q 012594 2 DREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH-----MH-AKITASMPQKAEQSSLITMVSIPDGLESHEA 75 (460)
Q Consensus 2 ~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 75 (460)
+.+.-|-+++..+.|-....+.+|-.-+-+|.+|.++-.=. -. ..++.. +++.+.....+.....
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~--------~~v~~~~~g~~~~~~~- 89 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLG--------QNLDWVRCDLPRCLDT- 89 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhC--------CCcEEEECCCCCeeeC-
Confidence 34456888999999999888888877777888888874221 11 112221 3677777654322110
Q ss_pred CcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 76 DRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
.+................++.+.. .++|+||-|....
T Consensus 90 --~~~~~~~~~~~~~~~~~a~~~l~~-------~~~dlvVLDEi~~ 126 (178)
T PRK07414 90 --PHLDESEKKALQELWQYTQAVVDE-------GRYSLVVLDELSL 126 (178)
T ss_pred --CCcCHHHHHHHHHHHHHHHHHHhC-------CCCCEEEEehhHH
Confidence 111100111122222333444443 8899999997444
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=61.27 E-value=90 Score=29.24 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=33.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
.|+++..++.|-..=...||..|+.+|++|.++..+.++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 355666679999999999999999999999999987654
No 334
>PRK11823 DNA repair protein RadA; Provisional
Probab=61.14 E-value=76 Score=31.38 Aligned_cols=42 Identities=31% Similarity=0.424 Sum_probs=34.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
-+++.-.|+.|-..-++.++..++++|+.|.|++.....+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 345666689999999999999999899999999988765544
No 335
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=61.05 E-value=83 Score=28.94 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHh--CCCEEEEEeCcc--chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAE--HGIKVTFVSTEH--MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~--rGh~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
+++||+++..+..+.+. +|.+.... .+++|.++.++. .....++. ++.++.++......
T Consensus 88 ~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~~~~~----- 150 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH---------GIPFHHFPITPDTK----- 150 (286)
T ss_pred cCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHHh---------CCCEEEeCCCcCch-----
Confidence 46799999988644443 33444332 368888875532 33444444 78877765321100
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEccc
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 140 (460)
......+.+.++. .++|++|.-.+.. -...+-+.+.-.++-++++
T Consensus 151 ----------~~~~~~~~~~l~~-------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 151 ----------PQQEAQVLDVVEE-------SGAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ----------hhhHHHHHHHHHH-------hCcCEEEEeChhhhCCHHHHhhccCCeEEeccc
Confidence 0011123333444 8899999776544 4455555555555655544
No 336
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=60.91 E-value=31 Score=30.42 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=25.0
Q ss_pred CCccEEEe-CCCcc-hHHHHHHHhCCceEEEcccch
Q 012594 109 EKISCVIA-DLTVG-WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 109 ~~~D~vv~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (460)
..||+||+ |+..- .+..=|.++|||.|.+..+..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 57997765 54323 677789999999999876654
No 337
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=60.82 E-value=14 Score=30.96 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=31.3
Q ss_pred EEEEEcCCCccChHH-HHHHHHHHHh-CCCEEEEEeCccchhHHh
Q 012594 6 HVLVIPFPAQGHAGP-LMKLSTKIAE-HGIKVTFVSTEHMHAKIT 48 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p-~~~La~~L~~-rGh~V~~~~~~~~~~~~~ 48 (460)
||+..-.|+ ||... ...+.++|++ +||+|.++.++...+.+.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 355444454 77766 8899999984 699999999987776554
No 338
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.75 E-value=13 Score=34.05 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=35.7
Q ss_pred ccceeeccChhhhhHhhh---cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS---MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~---~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++++|.-||-||+++++. .++|+++++... + |.. ..++.+++.+++.+++++.
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl------~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFL------TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Ccc------ccCCHHHHHHHHHHHHcCC
Confidence 455999999999999874 456888885421 1 111 2345677778888887543
No 339
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.67 E-value=24 Score=28.10 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=35.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
.+|++.+.++-+|-.----++..|...|++|..+......
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~ 41 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQ 41 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCH
Confidence 4899999999999999999999999999999999876543
No 340
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.40 E-value=14 Score=34.07 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=38.0
Q ss_pred ccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
++.+|+=||-||+++++. .++|++.+... .+|.. ..++.+++.++|+++++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 445999999999999875 47788887331 12222 3457888999999998644
No 341
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.40 E-value=22 Score=33.16 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
.+||+|+-.|+.| ..+|..|++.||+|+++.... .+.+.+.
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~~ 45 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVREN 45 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHhC
Confidence 4699999878776 456788999999999999865 4555554
No 342
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=59.86 E-value=24 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=29.3
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 10 IPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 10 ~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
++.|+.|-.=-.+.||+.|++||..|-+++-..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 456899999999999999999999999998754
No 343
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=59.86 E-value=57 Score=32.07 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=34.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAE-HGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~-rGh~V~~~~~~~~~~~~ 47 (460)
=+++...|+.|-..-.+.++..++. .|+.|.|++.+-..+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 3566777899999999999999875 69999999988655444
No 344
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=59.50 E-value=1e+02 Score=27.64 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=34.4
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
|=.|+-. |+-|...=...||-.|++-+|.|.++++++.++..
T Consensus 20 KwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 20 KWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 4445554 68899999999999999999999999999866544
No 345
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=59.37 E-value=34 Score=33.83 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC--CCCCCC---cCcccHHHHHHHHHhhchH
Q 012594 19 GPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD--GLESHE---ADRRDLHKVRQSMLTVMPG 93 (460)
Q Consensus 19 ~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (460)
.-...+++.|.+.|+++. +|....+.+++. |+.+..+.+ +++... ..+-++.-.-..+.+.-.+
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~---------GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~ 79 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAEA---------GVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDD 79 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHHC---------CCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCch
Confidence 346789999999999984 677888989888 777766642 222211 1333333333333333233
Q ss_pred HHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 94 CLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 94 ~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
. .+-+++..= ...|+||++.+-+
T Consensus 80 ~-~~~l~~~~I----~~IDlVvvNLYPF 102 (511)
T TIGR00355 80 D-DADLEEHGI----EPIDLVVVNLYPF 102 (511)
T ss_pred H-HHHHHHcCC----CceeEEEEeccCh
Confidence 3 222333222 6799999996544
No 346
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=59.33 E-value=1.2e+02 Score=27.42 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=48.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc-----hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM-----HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
.+-++++..+.| + -.++|+.|+++||+|.++..... ++.++.. .+++..-++.++...+
T Consensus 6 ~~~~lITGASsG-I--G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--------~~v~v~vi~~DLs~~~----- 69 (265)
T COG0300 6 GKTALITGASSG-I--GAELAKQLARRGYNLILVARREDKLEALAKELEDK--------TGVEVEVIPADLSDPE----- 69 (265)
T ss_pred CcEEEEECCCch-H--HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--------hCceEEEEECcCCChh-----
Confidence 355666655444 2 36889999999999999987542 2222222 2566666665554221
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCC
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADL 118 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~ 118 (460)
.+..+..+++... ...|++|-..
T Consensus 70 --------------~~~~l~~~l~~~~--~~IdvLVNNA 92 (265)
T COG0300 70 --------------ALERLEDELKERG--GPIDVLVNNA 92 (265)
T ss_pred --------------HHHHHHHHHHhcC--CcccEEEECC
Confidence 1233344444432 5789999775
No 347
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=59.28 E-value=94 Score=25.10 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL 80 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (460)
.+++|++.. .-++=.-++.+++.|.+. ||.+ ++++...+.+++. .|+.+..+..+ +.+
T Consensus 3 ~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~vi~~-~~g------- 62 (142)
T PRK05234 3 ARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRLLSG-PLG------- 62 (142)
T ss_pred cCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEEEcC-CCC-------
Confidence 345666665 445567788999999999 9995 4566777777765 25655444111 000
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCC--Ccc--------hHHHHHHHhCCceEEEc
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADL--TVG--------WALEVAEQMGIARAAVI 138 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~--~~~--------~~~~~A~~lgiP~v~~~ 138 (460)
-.+.+.+++.. .+.|+||.-. ... .-...|-..+||++.-.
T Consensus 63 ----------g~~~i~~~I~~-------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l 113 (142)
T PRK05234 63 ----------GDQQIGALIAE-------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNR 113 (142)
T ss_pred ----------CchhHHHHHHc-------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCH
Confidence 11334455555 8999999733 322 12235778899999643
No 348
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=59.21 E-value=80 Score=31.54 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEE
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAA 136 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 136 (460)
.+||++|.. .....+|+++|||++-
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 789999997 5567889999999984
No 349
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=59.09 E-value=45 Score=32.30 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=27.2
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEE
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFV 38 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~ 38 (460)
+|++... .+.|-..-++.|.+.|++||++|.-+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4555554 47899999999999999999999765
No 350
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=59.03 E-value=2.5e+02 Score=29.91 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=31.2
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPF--PAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~--~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+.|++.++. |+-|-..-...||..|+..|++|.++=.+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 346666664 577888889999999999999999996543
No 351
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.00 E-value=13 Score=37.97 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=39.0
Q ss_pred cccceeeccChhhhhHhhh----cCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 348 SVACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 348 ~~~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
.++++|+-||-||++.+.. .++|++.+-. |..-.. ..++.+++.++|+++++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~-----------------G~lGFL---~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINM-----------------GTVGFL---TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------------CCCCcC---cccCHHHHHHHHHHHHcCC
Confidence 3566999999999999966 4789988822 222222 3457888999999998654
No 352
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=58.79 E-value=17 Score=34.78 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=66.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
=|++---|+-|--.=+++++..|+++| .|.|++.+...+.++-.-. .+.. +. .+ +.
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~-------RL~~---~~----~~---------l~ 150 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD-------RLGL---PT----NN---------LY 150 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH-------HhCC---Cc----cc---------eE
Confidence 355555588899999999999999999 9999999987666622100 1111 00 00 01
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hH--------------------HHHHHHhCCceEEEccc
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WA--------------------LEVAEQMGIARAAVIPY 140 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~--------------------~~~A~~lgiP~v~~~~~ 140 (460)
.+ ....++++++.+.. .+||++|.|.... +. ..+|+..||+.+.+.+.
T Consensus 151 l~---aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 151 LL---AETNLEDIIAELEQ----EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred Ee---hhcCHHHHHHHHHh----cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 11 11225556666666 8999999997432 21 23677888988876544
No 353
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=58.54 E-value=1.5e+02 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEEc
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAVI 138 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 138 (460)
.+||++|.. .....+|+++|||++.+.
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 889999976 345677889999998653
No 354
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=58.11 E-value=38 Score=31.52 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=28.4
Q ss_pred cCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 11 PFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 11 ~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+.|+.|-.=-...|++.|.++|++|.+++...
T Consensus 37 tvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred ccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35788999999999999999999999999754
No 355
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=57.86 E-value=10 Score=29.96 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 20 PLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 20 p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
-.+-|+..|.++||+|++++++.....++-.
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 3678899999999999999999888877654
No 356
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.77 E-value=82 Score=31.10 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=23.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
.+|+++. .|. .- +.+|+.|+++|++|++.....
T Consensus 6 k~v~iiG---~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVG---AGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEEC---CCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 4666663 333 33 499999999999999987643
No 357
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.57 E-value=84 Score=30.07 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA 45 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 45 (460)
|.|+-.-+.|-..-+-.+|..+.++|+.+.+++.+.++.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 456666699999999999999999999999999887643
No 358
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=57.56 E-value=19 Score=32.67 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
|++ .|.+..-|+-|-..-...||..|+++|++|.++=.++.
T Consensus 1 m~~--iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 1 MAL--VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred Cce--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 663 45566568999999999999999999999999955543
No 359
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.37 E-value=1e+02 Score=28.24 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
.++|+|+-.|..|. .+|+.|+++||.|.++..+.........
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 35888888887775 5799999999999999988877666554
No 360
>PRK10490 sensor protein KdpD; Provisional
Probab=56.94 E-value=47 Score=36.27 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
+.||.+=..|+-|-.+.|+.-|.+|+++|++|++..-+..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 4588888889999999999999999999999998765443
No 361
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=56.73 E-value=23 Score=32.80 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=36.2
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA 45 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 45 (460)
|.++.+|.|..-|+-|-..-...||..|+++|++|.++-.+...+
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~ 45 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKAD 45 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccc
Confidence 555556667766899999999999999999999999996655444
No 362
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=56.73 E-value=1.3e+02 Score=27.51 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEccc
Q 012594 94 CLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 94 ~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~ 140 (460)
.+.++++.+++ .+..+|+++.... .+-.+|+..|++.+.+.+.
T Consensus 208 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 208 QLAELVEFVKK----SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 45666666666 8899999998666 5567899999999876543
No 363
>PLN02470 acetolactate synthase
Probab=56.68 E-value=47 Score=34.22 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=51.9
Q ss_pred EcCCCcCCC--HHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccC----------chhhcC
Q 012594 278 AFGSVAVLS--QEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAP----------QEKVLG 345 (460)
Q Consensus 278 s~Gs~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----------~~~ll~ 345 (460)
+|||..... ...-+.+++.|++.|.+.++-+.+.. ...+-+.+.+ +++++++.-.. +..+-.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~----~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg 75 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGA----SMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASG 75 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcc----cHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhC
Confidence 355553322 23356688888888999888876551 1222223321 22343321111 111222
Q ss_pred CCcccceeeccChh------hhhHhhhcCCceeecc
Q 012594 346 HPSVACFLSHCGWN------STLEGLSMGVPFLCWP 375 (460)
Q Consensus 346 ~~~~~~~I~hgG~~------sv~eal~~GvP~i~~P 375 (460)
...++++|.|.| .+.+|...++|||++.
T Consensus 76 --~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 --KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred --CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 344589998865 6799999999999995
No 364
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=56.65 E-value=1.1e+02 Score=28.19 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHh--CCCEEEEEeCcc--chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAE--HGIKVTFVSTEH--MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~--rGh~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
+++||+++..|..+.+..++ +...+ -+++|.++.++. .....++. ++.++.++......
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~~~~~----- 150 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVERF---------GIPFHHVPVTKETK----- 150 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHHHh---------CCCEEEeccCcccc-----
Confidence 45799999988855554443 33333 258888886654 23333333 78877766421100
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEccc
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 140 (460)
......+.+.++. .+||+||.-.+.. -...+-+.+.-.++-++++
T Consensus 151 ----------~~~~~~~~~~l~~-------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 151 ----------AEAEARLLELIDE-------YQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ----------chhHHHHHHHHHH-------hCCCEEEEecchhhcCHHHHhhccCCceecCcc
Confidence 0111223344444 8999999776444 3334444444344543333
No 365
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=56.41 E-value=1.2e+02 Score=28.31 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
|||+|+..+. -.....+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 4788885443 346677888888999886665
No 366
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=56.33 E-value=11 Score=31.61 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=25.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
|||.++. +.|++- -.|+++..+|||+||-++.+..+
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 3566553 444443 46789999999999999985544
No 367
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=55.97 E-value=1.6e+02 Score=26.68 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcccc
Q 012594 93 GCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPYA 141 (460)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~ 141 (460)
..+.++.+.+++ .+..+|+++.... .+-.+|+..|+|.+.+.+..
T Consensus 204 ~~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 204 ADLKRLIDLAKE----KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 345666666776 8899999998666 56688999999999887554
No 368
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=55.83 E-value=81 Score=29.86 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=57.4
Q ss_pred EEEEEcCCCcc--Ch---HHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccH
Q 012594 6 HVLVIPFPAQG--HA---GPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDL 80 (460)
Q Consensus 6 ~Il~~~~~~~g--H~---~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (460)
-|+|.|+.+.| -- .-+.+|++.|.++|+.|.+++.+...+..++.... ......-....+.+
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~-~~~~~~~~~~~l~g------------ 248 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA-LNTEQQAWCRNLAG------------ 248 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh-cccccccceeeccC------------
Confidence 46666644322 22 23689999998889999998877655544332100 00000000011110
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEcc
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIP 139 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 139 (460)
...+.++...+ .+.|++|+. ......+|..+|+|.|.+..
T Consensus 249 -----------~~sL~el~ali------~~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 249 -----------ETQLEQAVILI------AACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred -----------CCCHHHHHHHH------HhCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 01133444444 337999987 46678899999999998764
No 369
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=55.56 E-value=37 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.3
Q ss_pred eeeccChh------hhhHhhhcCCceeeccc
Q 012594 352 FLSHCGWN------STLEGLSMGVPFLCWPY 376 (460)
Q Consensus 352 ~I~hgG~~------sv~eal~~GvP~i~~P~ 376 (460)
+++++|.| .+.+|...++|||++.-
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 77877754 56899999999999963
No 370
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=55.52 E-value=36 Score=30.66 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCccEEEe-CCCcc-hHHHHHHHhCCceEEEcccch
Q 012594 109 EKISCVIA-DLTVG-WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 109 ~~~D~vv~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (460)
..||+||+ |+..- .+..=|.++|||.|.+..+..
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 47997765 54333 677779999999999876654
No 371
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=55.52 E-value=34 Score=32.07 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=31.6
Q ss_pred EEE--EcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 7 VLV--IPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 7 Il~--~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
|.+ ++.|+.|-.--...|++.|.++|++|.+++...
T Consensus 52 IsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 52 IVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 445 677899999999999999999999999998754
No 372
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=55.04 E-value=1.7e+02 Score=29.05 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=29.2
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
+|+|... .+.|-..-...|++.|+++|++|..+=.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 6666654 4678999999999999999999998854
No 373
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=54.98 E-value=18 Score=34.94 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhh
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~ 49 (460)
+.||++...|+.|= .-...+.+.|.+.|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 45888887776554 5589999999999999999999887776643
No 374
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=54.76 E-value=28 Score=28.60 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=26.2
Q ss_pred EEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEE
Q 012594 274 VIYVAFGSVAVLSQEQLEELALGLESLQQPFLWV 307 (460)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 307 (460)
.+|+++||+.......++..++++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999998767777888888888776533333
No 375
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=54.62 E-value=47 Score=29.83 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=49.5
Q ss_pred CEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCcc
Q 012594 33 IKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKIS 112 (460)
Q Consensus 33 h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D 112 (460)
....+..++.+.-..... |++...+...-+..+ .....+.++.+.+++ .+..
T Consensus 150 ~~~~v~~h~~~~Y~~~~~---------gl~~~~~~~~~~~~~---------------ps~~~l~~l~~~ik~----~~v~ 201 (256)
T PF01297_consen 150 GRPVVVYHDAFQYFAKRY---------GLKVIGVIEISPGEE---------------PSPKDLAELIKLIKE----NKVK 201 (256)
T ss_dssp GGEEEEEESTTHHHHHHT---------T-EEEEEESSSSSSS---------------S-HHHHHHHHHHHHH----TT-S
T ss_pred CCeEEEEChHHHHHHHhc---------CCceeeeeccccccC---------------CCHHHHHHHHHHhhh----cCCc
Confidence 356677777777777776 788766552222111 112335556666666 8899
Q ss_pred EEEeCCCcc--hHHHHHHHhCCceEEEccc
Q 012594 113 CVIADLTVG--WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 113 ~vv~D~~~~--~~~~~A~~lgiP~v~~~~~ 140 (460)
+|+++.... .+..+|+..|+|.+.+.+.
T Consensus 202 ~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 202 CIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp EEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred EEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 999998666 5677899999999875554
No 376
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=54.60 E-value=96 Score=30.49 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.1
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEE
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAV 137 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 137 (460)
.+||++|.+. ....+|+++|||++.+
T Consensus 371 ~~~dliiG~s---~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNS---YGRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 8899999985 3578899999999854
No 377
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=54.39 E-value=38 Score=26.95 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
++.||++...++-+|-..---++..|...|++|.......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~ 40 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQ 40 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 3679999999999999999999999999999999987653
No 378
>PLN02939 transferase, transferring glycosyl groups
Probab=54.26 E-value=22 Score=38.24 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCCEEEEEcC---C---CccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 3 REPHVLVIPF---P---AQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 3 ~~~~Il~~~~---~---~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+++||+|++. | +.|=-...-.|.++|+++||+|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3589998874 2 44555557789999999999999999854
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=54.19 E-value=1.3e+02 Score=28.48 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=33.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
.|+|+..++.|-..-...||..|.++|+.|.+++.+.++
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 355666679999999999999999999999999887553
No 380
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=54.16 E-value=52 Score=22.95 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 012594 411 QRQVKALLNDGGIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAIGC 460 (460)
Q Consensus 411 ~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~ 460 (460)
.+.+.+.|...-=+.+++++.++-++ ++++.-+.+.++||
T Consensus 25 S~~~e~~L~~~~~~~~~~~W~~eN~e----------ai~~~n~~ve~~G~ 64 (72)
T PRK13710 25 SGLVNTAMQNEARRLRAERWKAENRE----------GMAEVARFIEMNGS 64 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCC
Confidence 34455555444456677777777776 56666677777775
No 381
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=54.11 E-value=1.2e+02 Score=25.53 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEcCCCccChHHHHHHHHHHHhC
Q 012594 9 VIPFPAQGHAGPLMKLSTKIAEH 31 (460)
Q Consensus 9 ~~~~~~~gH~~p~~~La~~L~~r 31 (460)
++-.|+.||..=|+.|.+.|.++
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhh
Confidence 44459999999999999999776
No 382
>PRK05748 replicative DNA helicase; Provisional
Probab=54.07 E-value=74 Score=31.49 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=34.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIA-EHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~ 47 (460)
=|++...|+.|-..-.+.+|...+ ++|+.|.|++.+-..+.+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 466777899999999999999987 469999999987655444
No 383
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=53.75 E-value=1.6e+02 Score=26.59 Aligned_cols=114 Identities=11% Similarity=0.194 Sum_probs=60.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCc------cccCCCCeEEEEcCCCCCCCCcCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQ------KAEQSSLITMVSIPDGLESHEADRRD 79 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (460)
+|.|--.|+-|-=.-.-.|++.|.++||+|-+++-++.....-.+... .....+++=+.+++ ....
T Consensus 31 ~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a--------tRG~ 102 (266)
T PF03308_consen 31 VIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA--------TRGS 102 (266)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----------SS
T ss_pred EEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC--------cCCC
Confidence 566777789999999999999999999999999877654322111100 00112344444444 2222
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEcc
Q 012594 80 LHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIP 139 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~ 139 (460)
+..+ .....+.+..+.. ..+|+||...--. .-..+++...+=++.+.|
T Consensus 103 lGGl--------s~~t~~~v~ll~a----aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 103 LGGL--------SRATRDAVRLLDA----AGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp HHHH--------HHHHHHHHHHHHH----TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred CCCc--------cHhHHHHHHHHHH----cCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 2222 2224445555555 8899999985333 234455555655554443
No 384
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=53.63 E-value=26 Score=32.34 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA 45 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 45 (460)
|||+|..-|+-|-..-...||..|+++|++|.++=.++..+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n 41 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHD 41 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCc
Confidence 46899999999999999999999999999999987766543
No 385
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=53.49 E-value=56 Score=32.37 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=34.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
-+++.--|+.|-..-++.++..++++|+.|.|++.+...+.+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 345666689999999999999999999999999987665544
No 386
>PRK04328 hypothetical protein; Provisional
Probab=53.45 E-value=1.3e+02 Score=26.89 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=33.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
.-+++.-.|+.|-..-.+.++.+-+++|+.+.|+++....+.+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQV 66 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHH
Confidence 3466677789999888888887767889999999987655444
No 387
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=53.44 E-value=1.7e+02 Score=27.31 Aligned_cols=29 Identities=3% Similarity=-0.089 Sum_probs=24.4
Q ss_pred CccEEEeCCCcchHHHHHHHhCCceEEEccc
Q 012594 110 KISCVIADLTVGWALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 110 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (460)
+.|++|+. ......+|..+|+|.|.++..
T Consensus 253 ~a~l~I~n--DSGp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 253 GAKAVVSV--DTGLSHLTAALDRPNITLYGP 281 (322)
T ss_pred hCCEEEec--CCcHHHHHHHhCCCEEEEECC
Confidence 47999987 467889999999999998753
No 388
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=53.30 E-value=20 Score=33.13 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=29.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCc-cchhHHhhc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTE-HMHAKITAS 50 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~-~~~~~~~~~ 50 (460)
|||.|+-.|..| ..+|..|++.||+|+++... ...+.+.+.
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~ 42 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNEN 42 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHHc
Confidence 368888877666 56788899999999999873 333444443
No 389
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=53.25 E-value=1.4e+02 Score=25.13 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=24.0
Q ss_pred CCccEEEeCCCcc---hHHHHHHHhCCceEEE
Q 012594 109 EKISCVIADLTVG---WALEVAEQMGIARAAV 137 (460)
Q Consensus 109 ~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~ 137 (460)
.+||+|++-.... .+..+|.++|.|++.=
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 6799999887555 6788999999999963
No 390
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.09 E-value=31 Score=28.09 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCCCCccEEEeCCCcc----------hHHHHHHHhCCceEEEcccchHH
Q 012594 95 LRNLIEKVNKSNDCEKISCVIADLTVG----------WALEVAEQMGIARAAVIPYAPAS 144 (460)
Q Consensus 95 ~~~~l~~l~~~~~~~~~D~vv~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~~ 144 (460)
++.++..++...=|+.||+|++..-.- -+..+|+++|||++-.+.+...+
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 467777777766669999999764221 34678999999999877666543
No 391
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=53.01 E-value=53 Score=32.69 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=54.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC--CCCCCC---cCcccH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD--GLESHE---ADRRDL 80 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~---~~~~~~ 80 (460)
++++...- =.-+..+|+.|.+.|+++. +|....+.+++. |+.+..+.+ +++.-. ..+-++
T Consensus 6 ~aLISVsD----K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~---------GI~v~~V~k~TgfpEil~GRVKTLHP 70 (513)
T PRK00881 6 RALISVSD----KTGIVEFAKALVELGVEIL--STGGTAKLLAEA---------GIPVTEVSDVTGFPEILDGRVKTLHP 70 (513)
T ss_pred EEEEEEeC----cccHHHHHHHHHHCCCEEE--EcchHHHHHHHC---------CCeeEEeecccCCchhcCCccccCCc
Confidence 55554432 3447899999999999984 677888989888 777666542 222211 022223
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 81 HKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
.-.-..+.+.-.+.-.+.++...- ...|+||++.+.+
T Consensus 71 ~IhgGiLa~r~~~~h~~~l~~~~i----~~IDlVvvNLYPF 107 (513)
T PRK00881 71 KIHGGILARRDNPEHVAALEEHGI----EPIDLVVVNLYPF 107 (513)
T ss_pred hhhhhhccCCCCHHHHHHHHHcCC----CceeEEEEeCcCh
Confidence 222223222222222223333222 7799999996544
No 392
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=52.97 E-value=21 Score=31.86 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.4
Q ss_pred ccceeeccChhhhhHhhhc----CCceeec
Q 012594 349 VACFLSHCGWNSTLEGLSM----GVPFLCW 374 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~~----GvP~i~~ 374 (460)
++++|+-||-||++.++.. ++|++.+
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGI 55 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNSGKPVYGM 55 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEE
Confidence 4559999999999988654 6898887
No 393
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=52.96 E-value=23 Score=28.66 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 23 KLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 23 ~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
-+|..|+++||+|++++.....+.+.+.
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 4688999999999999998855556666
No 394
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=52.90 E-value=1e+02 Score=25.98 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCccc-----hhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHH
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEHM-----HAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCL 95 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
+..|.+...++|+.|.+++..+. .+.+.+ ..+++++....+.+. ...-
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~-------~yP~l~i~g~~g~f~--------------------~~~~ 89 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIK-------EYPKLKIVGAFGPLE--------------------PEER 89 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHH-------HCCCCEEEEECCCCC--------------------hHHH
Confidence 34455555678899999977542 222222 235777755422211 0112
Q ss_pred HHHHHHHhhcCCCCCccEEEeCCCcc----hHHHHHHHhCCceE
Q 012594 96 RNLIEKVNKSNDCEKISCVIADLTVG----WALEVAEQMGIARA 135 (460)
Q Consensus 96 ~~~l~~l~~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v 135 (460)
.++++.+++ .+||+|++-...+ |.......++.+++
T Consensus 90 ~~i~~~I~~----s~~dil~VglG~PkQE~~~~~~~~~~~~~v~ 129 (177)
T TIGR00696 90 KAALAKIAR----SGAGIVFVGLGCPKQEIWMRNHRHLKPDAVM 129 (177)
T ss_pred HHHHHHHHH----cCCCEEEEEcCCcHhHHHHHHhHHhCCCcEE
Confidence 345666666 8899999988777 45555555565543
No 395
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.89 E-value=31 Score=33.69 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.1
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEE
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAV 137 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 137 (460)
.+||+++... ....+|+++|||++..
T Consensus 355 ~~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECC---cchhhHHhcCCCEEEc
Confidence 7899999884 3457899999999843
No 396
>PRK10037 cell division protein; Provisional
Probab=52.56 E-value=25 Score=31.48 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=32.3
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 6 HVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 6 ~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
.|.|... |+-|-..-...||..|+++|++|.++=.++.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 5667776 8999999999999999999999999955543
No 397
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=52.21 E-value=25 Score=31.87 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=33.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
|.|.+..-|+-|...-...||..|+++|++|.++=.++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35888877999999999999999999999999985554
No 398
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=51.76 E-value=25 Score=29.63 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhh
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~ 49 (460)
...++|...++.|-..-..++++++.++|+.|.|++.+...+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 3468888888889888899999999999999999998777666643
No 399
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=51.64 E-value=1.2e+02 Score=27.56 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=56.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQ 85 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (460)
=|++...|+.|-......|.+.|.+.|.+|.++...... +... . +. .. .- .+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~---------~--y~-----------~~-~~---Ek 54 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN---------D--YA-----------DS-KK---EK 54 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS---------S--S-------------G-GG---HH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh---------h--hh-----------ch-hh---hH
Confidence 467777899999999999999999999999998853333 2111 1 10 00 00 11
Q ss_pred HHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hH-----HHHHHHhCCceEEEcccchHHHHH
Q 012594 86 SMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WA-----LEVAEQMGIARAAVIPYAPASLAL 147 (460)
Q Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~-----~~~A~~lgiP~v~~~~~~~~~~~~ 147 (460)
.....+...+...+. +-++||+|.... -+ +.+|+..+.++..++.......+.
T Consensus 55 ~~R~~l~s~v~r~ls---------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~ 113 (270)
T PF08433_consen 55 EARGSLKSAVERALS---------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCL 113 (270)
T ss_dssp HHHHHHHHHHHHHHT---------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHH
T ss_pred HHHHHHHHHHHHhhc---------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHH
Confidence 112222222333222 238999998554 22 579999999999887777655443
No 400
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.62 E-value=31 Score=32.31 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhhcCCCCCccEEEeCCCcchH----------HHHHHHhCCceEEE
Q 012594 92 PGCLRNLIEKVNKSNDCEKISCVIADLTVGWA----------LEVAEQMGIARAAV 137 (460)
Q Consensus 92 ~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~----------~~~A~~lgiP~v~~ 137 (460)
....+++++-+++ .+||++|+.+.+-.+ ..+.+.++||.+.-
T Consensus 66 eea~~~i~~mv~~----~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKK----LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3445556666666 999999999855422 12557899999964
No 401
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.05 E-value=1.1e+02 Score=25.67 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc-chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHH
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEH-MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLI 99 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (460)
+..|.+...++|..|.+++..+ ..+.+.+.. ....+++++...-.++.... ...+++
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~~-------------------~~~~i~ 92 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERL---RARYPGLKIVGYHHGYFGPE-------------------EEEEII 92 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH---HHHCCCcEEEEecCCCCChh-------------------hHHHHH
Confidence 4455666667799999997654 222211110 12236888766433322111 011256
Q ss_pred HHHhhcCCCCCccEEEeCCCcc----hHHHHHHHhCCceEE
Q 012594 100 EKVNKSNDCEKISCVIADLTVG----WALEVAEQMGIARAA 136 (460)
Q Consensus 100 ~~l~~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~ 136 (460)
+.++. .+||+|++-...+ |+....+.++.+++.
T Consensus 93 ~~I~~----~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~ 129 (171)
T cd06533 93 ERINA----SGADILFVGLGAPKQELWIARHKDRLPVPVAI 129 (171)
T ss_pred HHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 66666 8899999998777 666667777665544
No 402
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=50.73 E-value=38 Score=26.17 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=33.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
||++...++.|-......|++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999998876
No 403
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=50.62 E-value=26 Score=33.06 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=31.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
+||.|+-.|..| ..+|..|+++||+|+++..+...+.+.+.
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~~~ 43 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELRAH 43 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHHhc
Confidence 489999888777 45788899999999999875544444443
No 404
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=50.36 E-value=1.1e+02 Score=26.62 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhhcCCCCCccEEEeCCCcc---hHHHHHHHhCCceEE
Q 012594 92 PGCLRNLIEKVNKSNDCEKISCVIADLTVG---WALEVAEQMGIARAA 136 (460)
Q Consensus 92 ~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~ 136 (460)
...++.+++.+++ -.+.+.|..+. .+..+|+.+|+|++.
T Consensus 105 ~~~m~~vl~~l~~------~gl~FvDS~T~~~s~a~~~A~~~gvp~~~ 146 (213)
T PF04748_consen 105 REAMRWVLEVLKE------RGLFFVDSRTTPRSVAPQVAKELGVPAAR 146 (213)
T ss_dssp HHHHHHHHHHHHH------TT-EEEE-S--TT-SHHHHHHHCT--EEE
T ss_pred HHHHHHHHHHHHH------cCCEEEeCCCCcccHHHHHHHHcCCCEEe
Confidence 4456667777765 47888888665 678899999999995
No 405
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=50.33 E-value=1.4e+02 Score=25.97 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=20.6
Q ss_pred CCccEEEeCCCcc-hHHHHHHHhCCceEEEcccc
Q 012594 109 EKISCVIADLTVG-WALEVAEQMGIARAAVIPYA 141 (460)
Q Consensus 109 ~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 141 (460)
.+||++|+-.+.. ....+-+.+.-.++-++++.
T Consensus 77 ~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL 110 (207)
T PLN02331 77 AGVDFVLLAGYLKLIPVELVRAYPRSILNIHPAL 110 (207)
T ss_pred cCCCEEEEeCcchhCCHHHHhhCCCCEEEEeCcc
Confidence 8999999876444 34444455555566655553
No 406
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=50.27 E-value=29 Score=28.54 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
..+|+++-.|..| ...++.|.+.||+|+++++..
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCcc
Confidence 3477777665443 678899999999999996543
No 407
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=50.20 E-value=38 Score=31.54 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=40.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD 68 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (460)
|||.++-.|+.|= -+|-.|++.||+|+++..++..+.+.+. |+.+....+
T Consensus 1 mkI~IlGaGAvG~-----l~g~~L~~~g~~V~~~~R~~~~~~l~~~---------GL~i~~~~~ 50 (307)
T COG1893 1 MKILILGAGAIGS-----LLGARLAKAGHDVTLLVRSRRLEALKKK---------GLRIEDEGG 50 (307)
T ss_pred CeEEEECCcHHHH-----HHHHHHHhCCCeEEEEecHHHHHHHHhC---------CeEEecCCC
Confidence 4788888888774 4688899999999999998888888777 787765554
No 408
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=49.99 E-value=29 Score=31.44 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=33.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
|+|.+..-|+-|-..-...||..|+++|++|.++=.+..
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 368888778999999999999999999999999855543
No 409
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=49.81 E-value=2.4e+02 Score=30.13 Aligned_cols=169 Identities=10% Similarity=0.070 Sum_probs=98.2
Q ss_pred cEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCcccc----CCCchhHHhhhCCCcEE---eeccCchhhcC
Q 012594 273 SVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSH----AKLPDGFVERVSDRGKL---VEWAPQEKVLG 345 (460)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~---~~~~p~~~ll~ 345 (460)
..+|+++=.+...++......++.+.+.|.|++++++++...... -.+...-. .......- .+-++..++-.
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~e-d~~~~~~TG~efD~ls~~~~~~ 650 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDE-DVSSMALTGSEFDDLSDEELDD 650 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCc-cccccccchhhhhcCCHHHHHH
Confidence 389999888877788888889999999999999999876322100 00000000 00000000 01122111110
Q ss_pred CCcccceeeccChh---hhhHhhhcCCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcChH
Q 012594 346 HPSVACFLSHCGWN---STLEGLSMGVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDGG 422 (460)
Q Consensus 346 ~~~~~~~I~hgG~~---sv~eal~~GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 422 (460)
...--.++..+-.. -+.|+|..--=++.+ .+|-..-|-.+..+ -+|+.+.. --.+.-+++-+=+|.|+.
T Consensus 651 ~~~~~~vFaR~~P~HK~kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAMG~-----~GTdVaKeAsDMVL~DDn 722 (972)
T KOG0202|consen 651 AVRRVLVFARAEPQHKLKIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAMGI-----SGTDVAKEASDMVLADDN 722 (972)
T ss_pred HhhcceEEEecCchhHHHHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceeecC-----CccHhhHhhhhcEEecCc
Confidence 01111244444432 356777766665554 56777777777775 88888843 223344556666788887
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 423 IKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 423 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
+.. +-++++||-+-.+++..||+.+...
T Consensus 723 Fst--------IvaAVEEGr~IynNik~Fir~~lSs 750 (972)
T KOG0202|consen 723 FST--------IVAAVEEGRAIYNNIKNFIRYLLSS 750 (972)
T ss_pred HHH--------HHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 653 3346667888889999999988753
No 410
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=49.70 E-value=29 Score=31.85 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhH
Q 012594 284 VLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLE 363 (460)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~e 363 (460)
..+.+..+.+.+|+...+.+.||...++. .-.++.++++...+-++|+. +|-..-..++.-
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~-----------------ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~ 105 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY-----------------GANRLLPYLDYDLIRANPKI--FVGYSDITALHL 105 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC-----------------CHHHhhhhCCHHHHhhCCeE--EEEecHHHHHHH
Confidence 34667888899999999999999987761 11235566666666666666 777777777776
Q ss_pred hhhc--CCceeeccc
Q 012594 364 GLSM--GVPFLCWPY 376 (460)
Q Consensus 364 al~~--GvP~i~~P~ 376 (460)
+++. |++.+--|.
T Consensus 106 ~l~~~~g~~t~hGp~ 120 (282)
T cd07025 106 ALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHhcCceEEECcc
Confidence 6653 666655554
No 411
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.70 E-value=1.8e+02 Score=26.48 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=34.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccch
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
.+|+|+..++.|-..-+..|+..+..+|+.|.+++.+.++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4788888888898888889999999899999999987654
No 412
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=49.67 E-value=20 Score=31.57 Aligned_cols=26 Identities=8% Similarity=0.395 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 17 HAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 17 H~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
|+..|.+.|++|.++||+|.++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56788999999999999999998763
No 413
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=49.33 E-value=97 Score=31.29 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.3
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEEc
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAVI 138 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 138 (460)
.+||++|.+. .+..+|+.+|||++.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 8899999874 46788999999998643
No 414
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=49.11 E-value=1.3e+02 Score=27.27 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHHHH
Q 012594 20 PLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRNLI 99 (460)
Q Consensus 20 p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (460)
-+..|++.|.++|+.|.+++.+...+..++.... ...-....+. . ...+.++.
T Consensus 141 ~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~----~~~~~~~~~~--------~---------------~~~l~e~~ 193 (279)
T cd03789 141 RFAALADRLLARGARVVLTGGPAERELAEEIAAA----LGGPRVVNLA--------G---------------KTSLRELA 193 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh----cCCCccccCc--------C---------------CCCHHHHH
Confidence 4789999999899999998887655544332100 0000000000 0 00123344
Q ss_pred HHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEccc
Q 012594 100 EKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 100 ~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (460)
..+ .+-|++|+.- .....+|..+|+|.+.+...
T Consensus 194 ~li------~~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 194 ALL------ARADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHH------HhCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 444 2379999763 46788889999999998754
No 415
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=48.44 E-value=1.7e+02 Score=30.74 Aligned_cols=34 Identities=3% Similarity=-0.186 Sum_probs=22.0
Q ss_pred CCccEEEeCCCcc-hHHHHHHHhCCceEEEcccch
Q 012594 109 EKISCVIADLTVG-WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 109 ~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (460)
.+||++|+-.+.. -...+-+.....++-++++..
T Consensus 74 ~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slL 108 (660)
T PRK08125 74 LAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLL 108 (660)
T ss_pred cCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcc
Confidence 8899999765433 334444555666788777744
No 416
>PLN02727 NAD kinase
Probab=48.30 E-value=28 Score=37.13 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=39.1
Q ss_pred cccceeeccChhhhhHhhhc----CCceeeccccchhhhhHHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcCh
Q 012594 348 SVACFLSHCGWNSTLEGLSM----GVPFLCWPYFADQYQNRNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLNDG 421 (460)
Q Consensus 348 ~~~~~I~hgG~~sv~eal~~----GvP~i~~P~~~dQ~~~a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~~ 421 (460)
.++++|+=||-||++.|... ++|++.+ ..|..-.. -.++.+++.+.|.+++++.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~~~~iPILGI-----------------NlGrLGFL---Tdi~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFRGAVPPVVSF-----------------NLGSLGFL---TSHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEE-----------------eCCCcccc---ccCCHHHHHHHHHHHHcCC
Confidence 45669999999999999664 6898887 22222222 3457888999999999643
No 417
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=47.95 E-value=25 Score=32.23 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 23 KLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 23 ~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
.+|..|++.||+|++++.....+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4788899999999999987555666665
No 418
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=47.89 E-value=34 Score=30.95 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=34.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA 45 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 45 (460)
+|.|+.-|+-|-..-...||..|+++|++|.++=.++..+
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n 42 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKAD 42 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 6888877899999999999999999999999996665433
No 419
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=47.83 E-value=44 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCccEEEeCCC--cchHHHHHHHhCCceEEEc
Q 012594 109 EKISCVIADLT--VGWALEVAEQMGIARAAVI 138 (460)
Q Consensus 109 ~~~D~vv~D~~--~~~~~~~A~~lgiP~v~~~ 138 (460)
.++|+|++-.. .+.|..+|..+|+|++++.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 78999996542 2378889999999999754
No 420
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=47.52 E-value=29 Score=35.23 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=43.5
Q ss_pred CchhhcCCCcccceeeccC-h-hhhhHhhhcCCceeeccccc-hhhhh---HHHHHhhhcceeEeecCCCCccCHHHHHH
Q 012594 339 PQEKVLGHPSVACFLSHCG-W-NSTLEGLSMGVPFLCWPYFA-DQYQN---RNYIFDAWKIGLRFFPDENGIITRQEIQR 412 (460)
Q Consensus 339 p~~~ll~~~~~~~~I~hgG-~-~sv~eal~~GvP~i~~P~~~-dQ~~~---a~~v~~~lg~g~~~~~~~~~~~~~~~l~~ 412 (460)
++.+++.-+++..|-+--- | =|-+||+++|||.|+.-+.+ -++.+ ... .. .|+-+.=. ...+.++..+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~-~~-~GV~VvdR----~~~n~~e~v~ 535 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDP-EE-YGVYVVDR----RDKNYDESVN 535 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HH-GG-GTEEEE-S----SSS-HHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccC-cC-CcEEEEeC----CCCCHHHHHH
Confidence 4444554444444444211 2 37899999999999986542 11111 111 12 25554443 3445555555
Q ss_pred HHHHHhcC-----h----HHHHHHHHHHHHH
Q 012594 413 QVKALLND-----G----GIKANALKMKQMA 434 (460)
Q Consensus 413 ~i~~~l~~-----~----~~~~~a~~l~~~~ 434 (460)
.|.+.|.+ . ..|++++++++.+
T Consensus 536 ~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 536 QLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 55555521 1 3677777776654
No 421
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=47.26 E-value=58 Score=28.76 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=34.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
-+++.-.++.|...-..+++.+..++|..|.|++.....+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 456667789999999999988888899999999997654443
No 422
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=46.86 E-value=2.5e+02 Score=26.38 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=23.7
Q ss_pred CccEEEeCCCcchHHHHHHHhCCceEEEcc
Q 012594 110 KISCVIADLTVGWALEVAEQMGIARAAVIP 139 (460)
Q Consensus 110 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 139 (460)
+.|++|+. ......+|..+|+|.|.+..
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 37999987 56788999999999998764
No 423
>PLN02712 arogenate dehydrogenase
Probab=46.28 E-value=1.2e+02 Score=31.80 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+++||.|+-.|..|. .+|+.|++.||+|+++....
T Consensus 368 ~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 368 SKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred CCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEECCh
Confidence 357899997655443 67888999999999887654
No 424
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.08 E-value=3e+02 Score=29.41 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=31.1
Q ss_pred CEEEEEcC--CCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 5 PHVLVIPF--PAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 5 ~~Il~~~~--~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
.||+.++. |+-|-..-...||..|++.|++|.++=.+.
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~ 585 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADG 585 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46665554 688999999999999999999999996553
No 425
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=45.79 E-value=1.9e+02 Score=27.35 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=34.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA 45 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 45 (460)
.|.+...|+.|--.-.-.|+..|.++|++|.+++.++...
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 4668888899999999999999999999999999876443
No 426
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=45.49 E-value=2.1e+02 Score=26.36 Aligned_cols=104 Identities=10% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCcc--chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEH--MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
+++||+++..+..+-+ .+|.+...+. ..+|.++.++. ..+..++. ++.++.++......
T Consensus 92 ~~~kiavl~Sg~g~nl---~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~---------gIp~~~~~~~~~~~----- 154 (289)
T PRK13010 92 QRPKVVIMVSKFDHCL---NDLLYRWRMGELDMDIVGIISNHPDLQPLAVQH---------DIPFHHLPVTPDTK----- 154 (289)
T ss_pred CCeEEEEEEeCCCccH---HHHHHHHHCCCCCcEEEEEEECChhHHHHHHHc---------CCCEEEeCCCcccc-----
Confidence 4578988887664333 3444444433 35777766543 33444444 78887776432110
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEccc
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 140 (460)
......+.+.++. .++|++|.-.+.. -...+-+.+.-.++-++++
T Consensus 155 ----------~~~~~~~~~~l~~-------~~~Dlivlagym~il~~~~l~~~~~~iiNiHpS 200 (289)
T PRK13010 155 ----------AQQEAQILDLIET-------SGAELVVLARYMQVLSDDLSRKLSGRAINIHHS 200 (289)
T ss_pred ----------cchHHHHHHHHHH-------hCCCEEEEehhhhhCCHHHHhhccCCceeeCcc
Confidence 0111223344444 8899999775544 3334444454445554444
No 427
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.49 E-value=33 Score=33.94 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
+.||++...|+.+ .+=...|++.|.++|++|.++.++...+++...
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 3588887766544 446789999999999999999998877777543
No 428
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=45.27 E-value=54 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
++||.|+-.|..| .++|+.|.++||+|++.....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 5789999877766 478999999999999987654
No 429
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=45.15 E-value=60 Score=27.08 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 12 FPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 12 ~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
+|+.|++- ..|+++|.++||+|+.++....
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGG
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCch
Confidence 35666654 3589999999999999998654
No 430
>PLN02285 methionyl-tRNA formyltransferase
Probab=45.13 E-value=1.6e+02 Score=27.87 Aligned_cols=34 Identities=6% Similarity=-0.048 Sum_probs=20.7
Q ss_pred CCccEEEeCCCcc-hHHHHHHHhCCceEEEcccch
Q 012594 109 EKISCVIADLTVG-WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 109 ~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (460)
.+||++|+-.+.. -...+-+....-++-++++..
T Consensus 92 ~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLL 126 (334)
T PLN02285 92 LQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLL 126 (334)
T ss_pred hCCCEEEhhHhhhhcCHHHHhhccCCEEEEecccc
Confidence 8899999764332 333344444555777776654
No 431
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=44.91 E-value=42 Score=30.66 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchh
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHA 45 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 45 (460)
+|+|..=|+-|-..-...||..|+++|++|.++=-++..+
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n 42 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKAD 42 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccc
Confidence 7888877899999999999999999999999986655433
No 432
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=44.83 E-value=96 Score=30.33 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=21.0
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEE
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAV 137 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 137 (460)
.+||+||.... ...+|+++|||++.+
T Consensus 357 ~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 357 LKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred cCCCEEEecCc---cchhhhhcCCCEEec
Confidence 78999998753 336899999999975
No 433
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=44.74 E-value=1.1e+02 Score=25.97 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=42.5
Q ss_pred eccccchhhhhHHHHHhhhcceeEeec---------CCCCccCHHHHH----HHHHHHhcChHHHHHHHHHHHHHHHH
Q 012594 373 CWPYFADQYQNRNYIFDAWKIGLRFFP---------DENGIITRQEIQ----RQVKALLNDGGIKANALKMKQMARKS 437 (460)
Q Consensus 373 ~~P~~~dQ~~~a~~v~~~lg~g~~~~~---------~~~~~~~~~~l~----~~i~~~l~~~~~~~~a~~l~~~~~~~ 437 (460)
+.|...||...-..+-+...+|+.-.. .-...++.+.++ +.|+++|.|+.+-+|-.++.+.+.++
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA 99 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNA 99 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHH
Confidence 455677777777666665677765531 001446777775 78999999998766666666665543
No 434
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=44.68 E-value=60 Score=30.70 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=62.8
Q ss_pred EEEEEcCC--CccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcccHHHH
Q 012594 6 HVLVIPFP--AQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPDGLESHEADRRDLHKV 83 (460)
Q Consensus 6 ~Il~~~~~--~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (460)
||.+++.| +.|=-+...++.+.+...|.+|.-+-. .+...++... -.++-..+..-...+. .+...
T Consensus 4 kIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~-Gy~GL~~~~i-------~~l~~~~v~~~~~~GG----T~lgs 71 (347)
T COG0205 4 KIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYN-GYLGLLEGDI-------KPLTREDVDDLINRGG----TFLGS 71 (347)
T ss_pred eEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEec-chhhhcCCcc-------eeccccchhHHHhcCC----eEEee
Confidence 89999886 667778889999999999999987754 2333332110 0111111111000000 00000
Q ss_pred HHHHHhhchHHHHHHHHHHhhcCCCCCccEEE---eCCCcchHHHHHHHhCCceEE
Q 012594 84 RQSMLTVMPGCLRNLIEKVNKSNDCEKISCVI---ADLTVGWALEVAEQMGIARAA 136 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv---~D~~~~~~~~~A~~lgiP~v~ 136 (460)
.+.......+..+..++.+++ ...|.+| .|..+..+..+|++.++|+|.
T Consensus 72 sR~~~~~~~e~~~~~~~~l~~----~gId~LvvIGGDgS~~gA~~Lae~~~i~vVG 123 (347)
T COG0205 72 ARFPEFKTEEGRKVAAENLKK----LGIDALVVIGGDGSYTGAALLAEEGGIPVVG 123 (347)
T ss_pred CCCCCcccHHHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHhcCCcEEe
Confidence 000000011222355555666 7788766 355555888999999999995
No 435
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=44.53 E-value=1.9e+02 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
|||++-.+.. ...+++.+++.|++|+.+.++..
T Consensus 4 ~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~~d 36 (451)
T PRK08591 4 KILIANRGEI-----ALRIIRACKELGIKTVAVHSTAD 36 (451)
T ss_pred eEEEECCCHH-----HHHHHHHHHHcCCeEEEEcChhh
Confidence 8999854433 47888899999999999877544
No 436
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=44.53 E-value=36 Score=28.71 Aligned_cols=31 Identities=29% Similarity=0.087 Sum_probs=21.7
Q ss_pred CCccEEEeCCCcch--HHHHHHHhCCceEEEcc
Q 012594 109 EKISCVIADLTVGW--ALEVAEQMGIARAAVIP 139 (460)
Q Consensus 109 ~~~D~vv~D~~~~~--~~~~A~~lgiP~v~~~~ 139 (460)
.+||+||+...... ....-+..|||++.+..
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 78999998654332 33445788999988753
No 437
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=44.46 E-value=83 Score=26.95 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.4
Q ss_pred EEEEEc-CCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 6 HVLVIP-FPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 6 ~Il~~~-~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
++-|+. ....|-..-++.-++....+|-.|.++++.-
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 554444 4588999999999999999999999998753
No 438
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.35 E-value=1.1e+02 Score=22.28 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHhh-cCCChHHHHHHHHHHHHh
Q 012594 408 QEIQRQVKALLNDGGIKANALKMKQMARKSLV-EGGSSFRNFESFVSQLKA 457 (460)
Q Consensus 408 ~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~-~~g~~~~~~~~~~~~l~~ 457 (460)
++....++++++|...-+|+++.++.....+. ++.+.......-|..|.+
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLee 66 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEE 66 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 44455667778888777777777776666555 366665555555555543
No 439
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=43.64 E-value=55 Score=27.67 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCCCCccEEEeCC--CcchHHHHHHHhCCceEEE
Q 012594 97 NLIEKVNKSNDCEKISCVIADL--TVGWALEVAEQMGIARAAV 137 (460)
Q Consensus 97 ~~l~~l~~~~~~~~~D~vv~D~--~~~~~~~~A~~lgiP~v~~ 137 (460)
.+.+...+ .++|.|++-. ....|..+|..+|+|+|..
T Consensus 44 ~~~~~~~~----~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD----DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc----cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 44444444 7799999654 2337889999999999963
No 440
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.46 E-value=56 Score=25.25 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=31.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
++....++..|.....-++..|.++|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 5667778999999999999999999999999976543
No 441
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=43.39 E-value=61 Score=29.20 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=39.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
.-+++.-.|+.|...-..+.+...+++|..|.++++......+.+.
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 4567777899999999999999999999999999998876666444
No 442
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=43.19 E-value=1.3e+02 Score=28.43 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=23.5
Q ss_pred CccEEEeCCCcchHHHHHHHhCCceEEEcc
Q 012594 110 KISCVIADLTVGWALEVAEQMGIARAAVIP 139 (460)
Q Consensus 110 ~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 139 (460)
+-|++|+. ......+|..+|+|.|.+..
T Consensus 262 ~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 37999987 46778899999999998764
No 443
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.91 E-value=2.4e+02 Score=25.81 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEccc
Q 012594 93 GCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~ 140 (460)
..+.++++.+++ .+.++|+++.... .+-.+++..|++.+.+.+.
T Consensus 215 ~~l~~l~~~ik~----~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l 260 (286)
T cd01019 215 KRLAKIRKEIKE----KGATCVFAEPQFHPKIAETLAEGTGAKVGELDPL 260 (286)
T ss_pred HHHHHHHHHHHH----cCCcEEEecCCCChHHHHHHHHhcCceEEEeccc
Confidence 446666667777 8899999998666 6778999999988765443
No 444
>PRK10818 cell division inhibitor MinD; Provisional
Probab=42.88 E-value=45 Score=30.22 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcC-CCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 1 MDREPHVLVIPF-PAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 1 m~~~~~Il~~~~-~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
|++ .|.|... |+-|-..-...||..|+++|++|.++=.+.
T Consensus 1 m~k--viav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MAR--IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred Cce--EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 652 3445553 799999999999999999999999997665
No 445
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=42.51 E-value=1.1e+02 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=25.0
Q ss_pred hcCCCcccceeeccChhh---hhHhhhcCCceeec
Q 012594 343 VLGHPSVACFLSHCGWNS---TLEGLSMGVPFLCW 374 (460)
Q Consensus 343 ll~~~~~~~~I~hgG~~s---v~eal~~GvP~i~~ 374 (460)
++..-+-+++|++||+-| +..|...|+|+++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 454333344999999987 89999999999886
No 446
>PRK06769 hypothetical protein; Validated
Probab=42.51 E-value=2e+02 Score=23.95 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~ 42 (460)
...+.+.|+++|+.+.++|...
T Consensus 33 v~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 33 TKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred HHHHHHHHHHCCCEEEEEECCc
Confidence 4568889999999999999764
No 447
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=42.47 E-value=1.4e+02 Score=28.48 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeE--EEEcCCCCCCCCcCcccHHHHHHHHHhhchHHHHH
Q 012594 20 PLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLIT--MVSIPDGLESHEADRRDLHKVRQSMLTVMPGCLRN 97 (460)
Q Consensus 20 p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (460)
..-.|++.|.+.|.++.+++.+...+...+...... ...+++ |..++. .. .. ..+.+
T Consensus 17 ~~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l-~~~~~~~~~~~~~~----ep-~~---------------~~v~~ 75 (366)
T PRK09423 17 ALARLGEYLKPLGKRALVIADEFVLGIVGDRVEASL-KEAGLTVVFEVFNG----EC-SD---------------NEIDR 75 (366)
T ss_pred HHHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHH-HhCCCeEEEEEeCC----CC-CH---------------HHHHH
Confidence 355677888877888888886543322111100000 001333 323321 11 10 12334
Q ss_pred HHHHHhhcCCCCCccEEEeCCCcc---hHHHHHHHhCCceEEEcccch
Q 012594 98 LIEKVNKSNDCEKISCVIADLTVG---WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 98 ~l~~l~~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 142 (460)
.++.+++ .++|+||+=.... .+-.+|...++|+|.+-+...
T Consensus 76 ~~~~~~~----~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTtag 119 (366)
T PRK09423 76 LVAIAEE----NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIAS 119 (366)
T ss_pred HHHHHHh----cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCccc
Confidence 4455555 7899999765333 444556667999998766543
No 448
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=42.45 E-value=43 Score=28.76 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+.||.+=..|+-|-.+.|+.=|.+|+++|.+|++..-..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 468888888999999999999999999999999986554
No 449
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=42.42 E-value=41 Score=31.37 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=27.1
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
|+...|.++++ |+.|-+ -..|++.|.++||+|++.+..
T Consensus 1 ~~~~~k~vlVt-G~~G~I--G~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 1 MADGGKVVCVT-GASGYI--ASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred CCCCCCEEEEE-CCchHH--HHHHHHHHHHCCCEEEEEEcC
Confidence 66666666666 444444 467899999999999877544
No 450
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=42.33 E-value=32 Score=33.02 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=30.5
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
|..+.+|+++-.|-.| +..|..|+++|++|+++-...
T Consensus 1 ~~~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 1 MSMKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCCcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 4456789999877777 899999999999999986544
No 451
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=42.21 E-value=44 Score=34.20 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccC----------chhhcCCCcccceeeccC
Q 012594 288 EQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAP----------QEKVLGHPSVACFLSHCG 357 (460)
Q Consensus 288 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----------~~~ll~~~~~~~~I~hgG 357 (460)
..-+.+++.|++.|.+.++.+.+. ....+-+.+.+ .++++++.-.. +..+-..+.+ +++|.|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~----~~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~G 85 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGG----AILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPAV--CMACSG 85 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEECCC
Confidence 446678888888999888887655 11222233321 22343322110 1123334444 888888
Q ss_pred hh------hhhHhhhcCCceeecc
Q 012594 358 WN------STLEGLSMGVPFLCWP 375 (460)
Q Consensus 358 ~~------sv~eal~~GvP~i~~P 375 (460)
.| .+.+|...++|+|++.
T Consensus 86 pG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 86 PGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEe
Confidence 55 6799999999999985
No 452
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=42.16 E-value=52 Score=31.75 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=29.7
Q ss_pred eeeccChhhhhHhhhcCCceeecccc--chhhhhHHHHHhhhcceeEeec
Q 012594 352 FLSHCGWNSTLEGLSMGVPFLCWPYF--ADQYQNRNYIFDAWKIGLRFFP 399 (460)
Q Consensus 352 ~I~hgG~~sv~eal~~GvP~i~~P~~--~dQ~~~a~~v~~~lg~g~~~~~ 399 (460)
.-|.||.--+.|-=.+|+|++.+-.. --.-.-|.|++. ++++--+.
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~Pl 395 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHPL 395 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCCC
Confidence 45677777777777899999877432 123334667775 66666543
No 453
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=42.11 E-value=52 Score=31.76 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhcCCCCCccEEEeCCCcchH----------HHHHHHhCCceEEEc
Q 012594 92 PGCLRNLIEKVNKSNDCEKISCVIADLTVGWA----------LEVAEQMGIARAAVI 138 (460)
Q Consensus 92 ~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~----------~~~A~~lgiP~v~~~ 138 (460)
.+..+++++-+++ .+||++|+.+.+-.+ ..+.+.++||.+.-.
T Consensus 62 eea~~~i~~mv~k----~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKAKVLEMIKG----ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3444555666666 999999999855422 124567999999754
No 454
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=41.85 E-value=1e+02 Score=33.51 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=62.2
Q ss_pred eccCchh---hcCCCcccceee---ccChhhh-hHhhhcCC---ceeeccccchhhhhHHHHHhhhc-ceeEeecCCCCc
Q 012594 336 EWAPQEK---VLGHPSVACFLS---HCGWNST-LEGLSMGV---PFLCWPYFADQYQNRNYIFDAWK-IGLRFFPDENGI 404 (460)
Q Consensus 336 ~~~p~~~---ll~~~~~~~~I~---hgG~~sv-~eal~~Gv---P~i~~P~~~dQ~~~a~~v~~~lg-~g~~~~~~~~~~ 404 (460)
..+|+.+ ++..++| ++. .-|+|.+ .|+++++. -+++++ |=..-|. . +| -|+.+ ..
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~---~-L~~~AllV-----NP 511 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQ---S-LGAGAILV-----NP 511 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHH---H-hCCceEEE-----CC
Confidence 4466654 5556666 554 3477755 69999955 222222 2222222 2 44 46777 44
Q ss_pred cCHHHHHHHHHHHhc-Ch-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 012594 405 ITRQEIQRQVKALLN-DG-GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLKAI 458 (460)
Q Consensus 405 ~~~~~l~~~i~~~l~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 458 (460)
.+.+.++++|.++|+ ++ +-+++.+++.+.+.. .+...=+++|++.|.+.
T Consensus 512 ~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 512 WNITEVAASIAQALNMPEEEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 789999999999997 44 344445555555543 45566677777777653
No 455
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=41.70 E-value=2.3e+02 Score=24.42 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhC-CCcEEeeccCchhhcCCCcc
Q 012594 271 VGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVS-DRGKLVEWAPQEKVLGHPSV 349 (460)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~ll~~~~~ 349 (460)
++.++.|+.|.++ ...++.|...+.++.++ ... +.+.+.+..+ ..+...........+..+++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 3557888777643 22344444556665544 322 1122221112 23444443334445655454
Q ss_pred cceeeccChhhhhHhhh----cCCceeeccccchhhhh-----HHHHHhhhcceeEeecCCCCccCHHHHHHHHHHHhcC
Q 012594 350 ACFLSHCGWNSTLEGLS----MGVPFLCWPYFADQYQN-----RNYIFDAWKIGLRFFPDENGIITRQEIQRQVKALLND 420 (460)
Q Consensus 350 ~~~I~hgG~~sv~eal~----~GvP~i~~P~~~dQ~~~-----a~~v~~~lg~g~~~~~~~~~~~~~~~l~~~i~~~l~~ 420 (460)
||.--+...+.+.++ .++++-++ |.+.. -..+.+. ++-+.+........-+..|++.|++++..
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~ 146 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDE 146 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcch
Confidence 888777666555544 56665444 33222 2223322 33333332112223446678888877732
Q ss_pred h--HHHHHHHHHHHHHHH
Q 012594 421 G--GIKANALKMKQMARK 436 (460)
Q Consensus 421 ~--~~~~~a~~l~~~~~~ 436 (460)
. .+-+.+.++.+.+++
T Consensus 147 ~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 147 SYESYIDFLYECRQKIKE 164 (202)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 2 455666666666665
No 456
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=41.65 E-value=82 Score=26.92 Aligned_cols=48 Identities=19% Similarity=0.096 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhcCCCCCccEEEeCCC--cchHHHHHHHhCC-ceEEEcccc
Q 012594 92 PGCLRNLIEKVNKSNDCEKISCVIADLT--VGWALEVAEQMGI-ARAAVIPYA 141 (460)
Q Consensus 92 ~~~~~~~l~~l~~~~~~~~~D~vv~D~~--~~~~~~~A~~lgi-P~v~~~~~~ 141 (460)
...++++.+.+.++. ++||+||+=.. ...|..++..||+ |..++-...
T Consensus 13 ~~~~~~lA~kI~~s~--~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~ 63 (192)
T COG2236 13 HRLCRALAEKIRASG--FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEH 63 (192)
T ss_pred HHHHHHHHHHHHHcC--CCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEE
Confidence 344666777777666 99999997663 3378899999998 666554443
No 457
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=41.37 E-value=1.9e+02 Score=25.73 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhCC-CEEEEEeCcc------chhHHhhccCccccCCCCeEEEEcCC-CCCCCCcCcccHHHHHHHHHh
Q 012594 18 AGPLMKLSTKIAEHG-IKVTFVSTEH------MHAKITASMPQKAEQSSLITMVSIPD-GLESHEADRRDLHKVRQSMLT 89 (460)
Q Consensus 18 ~~p~~~La~~L~~rG-h~V~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~ 89 (460)
+.|..++...|++.| .+|.++|+=. ..+.+++. |+++..+-. +...+. .+.+
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~---------G~eV~~~~~~~~~~~~-----------~ia~ 164 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR---------GFEIVNFTCLGLTDDR-----------EMAR 164 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC---------CcEEeeeeccCCCCCc-----------eeee
Confidence 356778888888888 5666665411 23333444 777766532 121111 0111
Q ss_pred hchHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHH----HHHHhCCceEEEc
Q 012594 90 VMPGCLRNLIEKVNKSNDCEKISCVIADLTVGWALE----VAEQMGIARAAVI 138 (460)
Q Consensus 90 ~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~----~A~~lgiP~v~~~ 138 (460)
.-...+.+.+.++.. ..+|.|+.-=....+.. +=+.+|+|++...
T Consensus 165 i~p~~i~~~~~~~~~----~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSN 213 (239)
T TIGR02990 165 ISPDCIVEAALAAFD----PDADALFLSCTALRAATCAQRIEQAIGKPVVTSN 213 (239)
T ss_pred cCHHHHHHHHHHhcC----CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHH
Confidence 222334455555433 67888876544443333 3456799998533
No 458
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=41.30 E-value=46 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 2 DREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 2 ~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
...++|+++....---..-+-.....|+++||+|++++-
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 345677766544444445566777778899999999964
No 459
>PLN02256 arogenate dehydrogenase
Probab=41.26 E-value=1.6e+02 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
+++|.|+-.|..|- .+|+.|.+.|++|+++....
T Consensus 36 ~~kI~IIG~G~mG~-----slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQ-----FLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHH-----HHHHHHHhCCCEEEEEECcc
Confidence 46888887665543 57888888999999887664
No 460
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=40.84 E-value=2.4e+02 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=23.8
Q ss_pred CCccEEEeCCCcc--hHHHHHHHhCCceEEEcccch
Q 012594 109 EKISCVIADLTVG--WALEVAEQMGIARAAVIPYAP 142 (460)
Q Consensus 109 ~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 142 (460)
..||+||+-.... .+..=|..+|||.|.+..+..
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 5699877554333 667778999999999876654
No 461
>PRK08163 salicylate hydroxylase; Provisional
Probab=40.68 E-value=33 Score=33.11 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
|++..+|+|+-.|-.| +.+|..|+++|++|+++=.
T Consensus 1 ~~~~~~V~IvGaGiaG-----l~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 1 MTKVTPVLIVGGGIGG-----LAAALALARQGIKVKLLEQ 35 (396)
T ss_pred CCCCCeEEEECCcHHH-----HHHHHHHHhCCCcEEEEee
Confidence 7777899999877544 6788889999999999854
No 462
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=40.46 E-value=45 Score=31.04 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCccccCCCchhHHhhhCCCcEEeeccCchhhcCCCcccceeeccChhhhhH
Q 012594 284 VLSQEQLEELALGLESLQQPFLWVVRPDFMNKSHAKLPDGFVERVSDRGKLVEWAPQEKVLGHPSVACFLSHCGWNSTLE 363 (460)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~~~I~hgG~~sv~e 363 (460)
..+.+..+.+.+++.....+.||.+.++. .-.++.++++...+-.||+. ||-..-..++.-
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~-----------------g~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGD-----------------DSNELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCccc-----------------CHhhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 33567788899999999999999987661 11235566666666666655 776666666666
Q ss_pred hhh--cCCceeeccc
Q 012594 364 GLS--MGVPFLCWPY 376 (460)
Q Consensus 364 al~--~GvP~i~~P~ 376 (460)
+++ +|++.+--|.
T Consensus 110 al~~~~g~~t~hGp~ 124 (308)
T cd07062 110 AIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHhcCCeEEECcc
Confidence 663 3555554454
No 463
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=40.33 E-value=2.6e+02 Score=30.68 Aligned_cols=28 Identities=7% Similarity=-0.150 Sum_probs=22.4
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEEcc
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAVIP 139 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 139 (460)
.+||++|+.. -...+|+++|||++-...
T Consensus 388 ~~pDLlig~~---~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 388 KMPDLIVAGG---KTKFLALKTRTPFLDINH 415 (917)
T ss_pred cCCCEEEecC---chhhHHHHcCCCeEEccC
Confidence 8999999864 346689999999996553
No 464
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=39.93 E-value=29 Score=30.69 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCEEEEEeC
Q 012594 22 MKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 22 ~~La~~L~~rGh~V~~~~~ 40 (460)
.+||++|+++|++|+++..
T Consensus 29 ~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHCCCEEEEEcC
Confidence 4889999999999998753
No 465
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=39.82 E-value=1.7e+02 Score=22.48 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=54.9
Q ss_pred cChHHHHHHHHHHHhC--CCEEEEEeCccchhHHhh-ccCccccCCCCeEEEEcCCCCCCCCcCcccHHHHHHHHHhhch
Q 012594 16 GHAGPLMKLSTKIAEH--GIKVTFVSTEHMHAKITA-SMPQKAEQSSLITMVSIPDGLESHEADRRDLHKVRQSMLTVMP 92 (460)
Q Consensus 16 gH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
++=.-++.+++.|.+. |+++. .+....+.+++ . |+.+..+ ...+... .
T Consensus 9 ~dK~~~~~~a~~~~~ll~Gf~i~--AT~gTa~~L~~~~---------Gi~v~~v-k~~~~~g-----------------~ 59 (115)
T cd01422 9 NKKEDLVEFVKQHQELLSRHRLV--ATGTTGLLIQEAT---------GLTVNRM-KSGPLGG-----------------D 59 (115)
T ss_pred cchHHHHHHHHHHHHHhcCCEEE--EechHHHHHHHhh---------CCcEEEE-ecCCCCc-----------------h
Confidence 3445678999999999 99984 56677888877 5 7777666 2111111 1
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEeCCC--cc-----hHH---HHHHHhCCceEEE
Q 012594 93 GCLRNLIEKVNKSNDCEKISCVIADLT--VG-----WAL---EVAEQMGIARAAV 137 (460)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~D~vv~D~~--~~-----~~~---~~A~~lgiP~v~~ 137 (460)
+.+.+++.. .+.|+||.-+. .. -+. ..|-..+||++..
T Consensus 60 ~~i~~~i~~-------g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 60 QQIGALIAE-------GEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred hHHHHHHHc-------CceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 334445554 88999986643 11 122 3477889999863
No 466
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=39.61 E-value=2.7e+02 Score=25.94 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEeCCCcc--hHHHHHHHhCCceEEEccc
Q 012594 93 GCLRNLIEKVNKSNDCEKISCVIADLTVG--WALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 93 ~~~~~~l~~l~~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~ 140 (460)
..+.++++.+++ .+..+|+++.... .+-.+++..|++.+.+.+.
T Consensus 239 ~~l~~l~~~ik~----~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl 284 (311)
T PRK09545 239 QRLHEIRTQLVE----QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPL 284 (311)
T ss_pred HHHHHHHHHHHH----cCCCEEEecCCCChHHHHHHHHhcCCeEEEeccc
Confidence 446666777777 8899999998766 6678899999998776443
No 467
>PRK06847 hypothetical protein; Provisional
Probab=39.59 E-value=34 Score=32.69 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=27.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
|+++.+|+|+-.|-.| +.+|..|+++|++|+++-.
T Consensus 1 m~~~~~V~IVGaG~aG-----l~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 1 MAAVKKVLIVGGGIGG-----LSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred CCCcceEEEECCCHHH-----HHHHHHHHhCCCCEEEEec
Confidence 8888899998866444 6677789999999999843
No 468
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=39.44 E-value=71 Score=27.33 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=22.9
Q ss_pred CCccEEEeCCC--cchHHHHHHHhCCceEEEc
Q 012594 109 EKISCVIADLT--VGWALEVAEQMGIARAAVI 138 (460)
Q Consensus 109 ~~~D~vv~D~~--~~~~~~~A~~lgiP~v~~~ 138 (460)
.++|+|++-.. .+.+..+|..+|+|+++..
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 78999985432 2377888999999999754
No 469
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.39 E-value=44 Score=31.41 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
|-..+||.|+-.|..| ..+|..|+++||+|+++....
T Consensus 1 ~~~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCCH
Confidence 4445689999888777 467889999999999998743
No 470
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.38 E-value=1.8e+02 Score=28.55 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=32.4
Q ss_pred EEEEcCCCccChHHHHHHHHHH-HhCCCEEEEEeCccchhH
Q 012594 7 VLVIPFPAQGHAGPLMKLSTKI-AEHGIKVTFVSTEHMHAK 46 (460)
Q Consensus 7 Il~~~~~~~gH~~p~~~La~~L-~~rGh~V~~~~~~~~~~~ 46 (460)
|+|+-.++.|-..-...||..+ ..+|+.|.+++.+.++..
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA 266 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence 4566566999999999999876 578999999999886543
No 471
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=39.33 E-value=66 Score=29.72 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCcc-C---hHHHHHHHHHHHhCCCEEEEEeC
Q 012594 2 DREPHVLVIPFPAQG-H---AGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 2 ~~~~~Il~~~~~~~g-H---~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
++++||+++..|..+ | +.-..++++.|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 046799888876444 2 23455889999999999988754
No 472
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=39.31 E-value=2.3e+02 Score=28.36 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=26.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCccc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEHM 43 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~~ 43 (460)
||||++..|+..| +|++.|++. |++|.++-.+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 4799988888777 467788776 999988865444
No 473
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=39.24 E-value=40 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCEEEEEeCcc
Q 012594 22 MKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 22 ~~La~~L~~rGh~V~~~~~~~ 42 (460)
+..|..|+++|++|+++=...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567899999999999986543
No 474
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=39.22 E-value=71 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=29.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCE-EEEEeC
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIK-VTFVST 40 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~-V~~~~~ 40 (460)
=|+|...|..|--.....|.+.|+++||. ++.+..
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 57788889999999999999999999976 444443
No 475
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=39.08 E-value=74 Score=25.73 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCcCCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012594 271 VGSVIYVAFGSVAVLSQEQLEELALGLESLQQPFLWVVR 309 (460)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 309 (460)
...+|++++||+.....+.++++++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3459999999998778888888888874 3456666543
No 476
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=38.83 E-value=4.6e+02 Score=27.05 Aligned_cols=87 Identities=9% Similarity=0.086 Sum_probs=48.5
Q ss_pred ccceeeccChhhhhHh---hhcCCceeeccccch---hhhhHHHHHhhh--cceeEe-ecCCCCccCHHHHHHHHHHHhc
Q 012594 349 VACFLSHCGWNSTLEG---LSMGVPFLCWPYFAD---QYQNRNYIFDAW--KIGLRF-FPDENGIITRQEIQRQVKALLN 419 (460)
Q Consensus 349 ~~~~I~hgG~~sv~ea---l~~GvP~i~~P~~~d---Q~~~a~~v~~~l--g~g~~~-~~~~~~~~~~~~l~~~i~~~l~ 419 (460)
++++|.-.|.-.-+-. -..-+|+|.+|.... -.+--.-+.. . |+.+.. .. ++..++.-++..|-. +.
T Consensus 466 ~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i--~~~~~aa~~a~~i~~-~~ 541 (577)
T PLN02948 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAI--GNATNAGLLAVRMLG-AS 541 (577)
T ss_pred CCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEec--CChHHHHHHHHHHHh-cC
Confidence 3458887775433222 233689999998532 1111111222 3 432221 11 244566666666533 34
Q ss_pred ChHHHHHHHHHHHHHHHHhh
Q 012594 420 DGGIKANALKMKQMARKSLV 439 (460)
Q Consensus 420 ~~~~~~~a~~l~~~~~~~~~ 439 (460)
|++++++++..++.+++...
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~ 561 (577)
T PLN02948 542 DPDLLDKMEAYQEDMRDMVL 561 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 78899999988888887543
No 477
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.68 E-value=33 Score=33.85 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
+||+|+-.|- .-++-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEecc
Confidence 3677776553 3478899999999999998554
No 478
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=38.61 E-value=1.1e+02 Score=31.27 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=22.0
Q ss_pred ccceeeccChh------hhhHhhhcCCceeecc
Q 012594 349 VACFLSHCGWN------STLEGLSMGVPFLCWP 375 (460)
Q Consensus 349 ~~~~I~hgG~~------sv~eal~~GvP~i~~P 375 (460)
..++++|.|.| .+.+|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499998865 6799999999999883
No 479
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=38.51 E-value=34 Score=28.30 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=23.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 6 HVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 6 ~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
||.|+-.|..| ..+|+.|.++||+|++.-.
T Consensus 3 ~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 3 KIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp EEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred EEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 89999888766 5789999999999998753
No 480
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=38.28 E-value=3e+02 Score=26.15 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCCCCEEEEEcCCCc-cChHHHHHHHHHHHhCC--CEEEEEeCccchhH----HhhccCccccCCCCeEEEEcCCCCCCC
Q 012594 1 MDREPHVLVIPFPAQ-GHAGPLMKLSTKIAEHG--IKVTFVSTEHMHAK----ITASMPQKAEQSSLITMVSIPDGLESH 73 (460)
Q Consensus 1 m~~~~~Il~~~~~~~-gH~~p~~~La~~L~~rG--h~V~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~ 73 (460)
|-++++++..|..-. |. .-+-.|.+.+.+.| .+|.+++.+...+. +.+.... .. .+..+..+
T Consensus 1 ~~~~~~~~~~p~~i~~G~-g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~---~~-~~~~~~~~------ 69 (350)
T PRK00843 1 MFEKSHWIQLPRDVVVGH-GVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLED---AG-DVEVVIVD------ 69 (350)
T ss_pred CCCCceEEeCCCeEEECC-CHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHh---cC-CeeEEeCC------
Confidence 556677777765422 32 34566777777665 58888877654332 2222110 00 12221111
Q ss_pred CcCcccHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc---hHHHHHHHhCCceEEEcccc
Q 012594 74 EADRRDLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG---WALEVAEQMGIARAAVIPYA 141 (460)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~ 141 (460)
+ . ....+.++++.+++ .++|+||+=.... .+-.+|...|+|+|.+-+..
T Consensus 70 ~-~--------------t~~~v~~~~~~~~~----~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 70 E-A--------------TMEEVEKVEEKAKD----VNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred C-C--------------CHHHHHHHHHHhhc----cCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCc
Confidence 0 0 11234555555555 6789999654322 34455677799999865554
No 481
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=38.24 E-value=3.4e+02 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.0
Q ss_pred CCccEEEeCCCcchHHHHHHHhCCceEEE
Q 012594 109 EKISCVIADLTVGWALEVAEQMGIARAAV 137 (460)
Q Consensus 109 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 137 (460)
.+||++|.... ...+|+++|||++-.
T Consensus 397 ~~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 397 LKPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred cCCCEEEecCc---cchhHhhcCCCEEEc
Confidence 78999998864 336799999999753
No 482
>PTZ00445 p36-lilke protein; Provisional
Probab=38.18 E-value=2.2e+02 Score=24.79 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=23.2
Q ss_pred cChHH-HHHHHHHHHhCCCEEEEEeCccch
Q 012594 16 GHAGP-LMKLSTKIAEHGIKVTFVSTEHMH 44 (460)
Q Consensus 16 gH~~p-~~~La~~L~~rGh~V~~~~~~~~~ 44 (460)
+|+.| +..++++|.+.|..|+++|.....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 34455 778999999999999999986543
No 483
>PLN02293 adenine phosphoribosyltransferase
Probab=38.15 E-value=89 Score=26.63 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=22.1
Q ss_pred CCccEEEeCCC--cchHHHHHHHhCCceEEE
Q 012594 109 EKISCVIADLT--VGWALEVAEQMGIARAAV 137 (460)
Q Consensus 109 ~~~D~vv~D~~--~~~~~~~A~~lgiP~v~~ 137 (460)
.++|+|++-.. ...+..+|+.+|+|++.+
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 67899986532 227888999999998853
No 484
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=38.13 E-value=1e+02 Score=23.91 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=31.3
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 13 PAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 13 ~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
...|+...+..+++.++++|..|..+|........+..
T Consensus 61 s~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp ESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred eccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 36788899999999999999999999987766655444
No 485
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=37.73 E-value=1.2e+02 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCcccceeeccChh------hhhHhhhcCCceeec
Q 012594 346 HPSVACFLSHCGWN------STLEGLSMGVPFLCW 374 (460)
Q Consensus 346 ~~~~~~~I~hgG~~------sv~eal~~GvP~i~~ 374 (460)
++.+ +++|.|.| .+.+|.+.++|+|++
T Consensus 63 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3444 89998865 668999999999999
No 486
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=37.72 E-value=63 Score=30.96 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 012594 1 MDREPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 1 m~~~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~ 41 (460)
|.+++||++. |+.|.+- ..|++.|.++||+|+.+...
T Consensus 18 ~~~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 18 PSEKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEec
Confidence 3446777765 5555543 57899999999999998753
No 487
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.61 E-value=54 Score=29.57 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=21.7
Q ss_pred ccceeeccChhhhhHhhh----cCCceeec
Q 012594 349 VACFLSHCGWNSTLEGLS----MGVPFLCW 374 (460)
Q Consensus 349 ~~~~I~hgG~~sv~eal~----~GvP~i~~ 374 (460)
++++|+=||-||++.|+. .++|++.+
T Consensus 34 ~D~vi~iGGDGT~L~a~~~~~~~~iPilGI 63 (259)
T PRK00561 34 ADYLFVLGGDGFFVSTAANYNCAGCKVVGI 63 (259)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCcEEEE
Confidence 455999999999998875 57899888
No 488
>PLN02891 IMP cyclohydrolase
Probab=37.61 E-value=1.2e+02 Score=30.38 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchhHHhhccCccccCCCCeEEEEcCC--CCCCCC---cCcccHHHHHHHHHhhchHH
Q 012594 20 PLMKLSTKIAEHGIKVTFVSTEHMHAKITASMPQKAEQSSLITMVSIPD--GLESHE---ADRRDLHKVRQSMLTVMPGC 94 (460)
Q Consensus 20 p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (460)
-+..+|+.|.+.|.+ +++|....+.+++. |+.+.++.+ +++.-. ..+-++.-+-..+.+.-.+.
T Consensus 34 gi~~fAk~L~~~gve--IiSTgGTak~L~e~---------Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGILa~r~~~~ 102 (547)
T PLN02891 34 DLALLANGLQELGYT--IVSTGGTASALEAA---------GVSVTKVEELTNFPEMLDGRVKTLHPAVHGGILARRDQEH 102 (547)
T ss_pred CHHHHHHHHHHCCCE--EEEcchHHHHHHHc---------CCceeeHHhccCCchhhCCcccccCchhhhhhhcCCCCHH
Confidence 367899999998765 56788899999888 787777752 222211 13333333333333222222
Q ss_pred HHHHHHHHhhcCCCCCccEEEeCCCcc
Q 012594 95 LRNLIEKVNKSNDCEKISCVIADLTVG 121 (460)
Q Consensus 95 ~~~~l~~l~~~~~~~~~D~vv~D~~~~ 121 (460)
-.+.+++..= ...|+||++.+-+
T Consensus 103 h~~~l~~~~I----~~IDlVvVNLYPF 125 (547)
T PLN02891 103 HMEALNEHGI----GTIDVVVVNLYPF 125 (547)
T ss_pred HHHHHHHcCC----CceeeEEEeccCh
Confidence 2223333222 7799999996543
No 489
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=37.57 E-value=2e+02 Score=22.42 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~ 42 (460)
...+.+.|+++|+.+.++|...
T Consensus 30 v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 30 VPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred HHHHHHHHHHCCCEEEEEECCc
Confidence 4567788889999999999866
No 490
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=37.41 E-value=1.8e+02 Score=28.35 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=20.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC-CCEEEEE
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEH-GIKVTFV 38 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~r-Gh~V~~~ 38 (460)
+||+++-.++..| +|++.|++. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 4799999887776 599999886 4433333
No 491
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=37.32 E-value=54 Score=31.71 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhhc
Q 012594 4 EPHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITAS 50 (460)
Q Consensus 4 ~~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~ 50 (460)
+.||++...|+.. .+....+++.|.++|++|.++-++.....+...
T Consensus 4 ~k~ill~v~gsia-ayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~ 49 (392)
T COG0452 4 GKRILLGVTGSIA-AYKSVELVRLLRRSGAEVRVVMTESARKFITPL 49 (392)
T ss_pred CceEEEEecCchh-hhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcc
Confidence 4488887766554 455689999999999999999998888877554
No 492
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=37.22 E-value=3.3e+02 Score=24.96 Aligned_cols=105 Identities=9% Similarity=0.046 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhC--CCEEEEEeCcc--chhHHhhccCccccCCCCeEEEEcCCCCCCCCcCcc
Q 012594 3 REPHVLVIPFPAQGHAGPLMKLSTKIAEH--GIKVTFVSTEH--MHAKITASMPQKAEQSSLITMVSIPDGLESHEADRR 78 (460)
Q Consensus 3 ~~~~Il~~~~~~~gH~~p~~~La~~L~~r--Gh~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (460)
+++||+++.++..+-+ .+|.+..... ..+|.++.++. .....++. ++.++.++.... .
T Consensus 83 ~~~ki~vl~Sg~g~nl---~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~---------gIp~~~~~~~~~-~----- 144 (280)
T TIGR00655 83 KLKRVAILVSKEDHCL---GDLLWRWYSGELDAEIALVISNHEDLRSLVERF---------GIPFHYIPATKD-N----- 144 (280)
T ss_pred CCcEEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHh---------CCCEEEcCCCCc-c-----
Confidence 4579998887764433 3444444322 25777776543 23334444 788777663211 0
Q ss_pred cHHHHHHHHHhhchHHHHHHHHHHhhcCCCCCccEEEeCCCcc-hHHHHHHHhCCceEEEcccc
Q 012594 79 DLHKVRQSMLTVMPGCLRNLIEKVNKSNDCEKISCVIADLTVG-WALEVAEQMGIARAAVIPYA 141 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 141 (460)
...... ++++.+++ .++|+||.-.+.. -...+-+.+.-.++-++++.
T Consensus 145 ---------~~~~e~---~~~~~l~~----~~~Dlivlagym~il~~~~l~~~~~~iINiHpSL 192 (280)
T TIGR00655 145 ---------RVEHEK---RQLELLKQ----YQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSF 192 (280)
T ss_pred ---------hhhhHH---HHHHHHHH----hCCCEEEEeCchhhCCHHHHhhccCCEEEecCCc
Confidence 001112 23333444 8899999776554 44455555555566655553
No 493
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=37.00 E-value=4e+02 Score=27.18 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhcCCCCCccEEEeCCCcchHHHHHHHhCCceEEEccc
Q 012594 92 PGCLRNLIEKVNKSNDCEKISCVIADLTVGWALEVAEQMGIARAAVIPY 140 (460)
Q Consensus 92 ~~~~~~~l~~l~~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (460)
....+..++.+++ ...++||+|. .+...|+.+|++.+.....
T Consensus 141 ~~e~~~~v~~lk~----~G~~~vvG~~---~~~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 141 EEDARGQINELKA----NGIEAVVGAG---LITDLAEEAGMTGIFIYSA 182 (538)
T ss_pred HHHHHHHHHHHHH----CCCCEEEcCc---hHHHHHHHhCCceEEecCH
Confidence 4456778888888 8899999994 3578899999999998854
No 494
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=36.96 E-value=4.4e+02 Score=26.34 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEeC
Q 012594 13 PAQGHAGPLMKLSTKIAEHGIKVTFVST 40 (460)
Q Consensus 13 ~~~gH~~p~~~La~~L~~rGh~V~~~~~ 40 (460)
...|-..-...|++.|+++|.+|..+=+
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3468888899999999999999998754
No 495
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=36.94 E-value=3e+02 Score=24.35 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=34.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHH
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKI 47 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~ 47 (460)
.-+++...|+.|...-...++.+-+++|..|.|++.....+.+
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 4567777789999999999888766899999999988765444
No 496
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=36.89 E-value=1.8e+02 Score=22.63 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCCEEEEEeCc
Q 012594 20 PLMKLSTKIAEHGIKVTFVSTE 41 (460)
Q Consensus 20 p~~~La~~L~~rGh~V~~~~~~ 41 (460)
.+-.+...+.++|++|++++-.
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~t 34 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTLT 34 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEECE
T ss_pred hhHHHHHHHHhcCCeEEEEEec
Confidence 4455666788899999988643
No 497
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.85 E-value=57 Score=30.71 Aligned_cols=45 Identities=9% Similarity=0.164 Sum_probs=36.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCccchhHHhh
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEHMHAKITA 49 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~ 49 (460)
..++|+..++.|-..=..++|++|.++|+.|.+++.+...+.+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 357777777888888888999999999999999988776665543
No 498
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=36.85 E-value=1.6e+02 Score=24.41 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCccc
Q 012594 21 LMKLSTKIAEHGIKVTFVSTEHM 43 (460)
Q Consensus 21 ~~~La~~L~~rGh~V~~~~~~~~ 43 (460)
...+.+.|+++|+.+.++|...+
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcc
Confidence 45677889999999999986544
No 499
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=36.82 E-value=1.7e+02 Score=29.24 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=60.7
Q ss_pred EeeccCchh---hcCCCccccee-eccChhhh-hHhhhcCCc---eeeccccchhhhhHHHHHhhhc-ceeEeecCCCCc
Q 012594 334 LVEWAPQEK---VLGHPSVACFL-SHCGWNST-LEGLSMGVP---FLCWPYFADQYQNRNYIFDAWK-IGLRFFPDENGI 404 (460)
Q Consensus 334 ~~~~~p~~~---ll~~~~~~~~I-~hgG~~sv-~eal~~GvP---~i~~P~~~dQ~~~a~~v~~~lg-~g~~~~~~~~~~ 404 (460)
+.+-+|+.+ ++..+++-++= ...|+|.+ .|-+++..+ ++++ -++.-|. .. |+ .++.++ .
T Consensus 357 ~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiL----SefaGaa--~~-L~~~al~VN-----P 424 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLIL----SEFAGAA--EQ-LSEAALLVN-----P 424 (474)
T ss_dssp E-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEE----ETTBGGG--GT--TTS-EEE------T
T ss_pred EecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEe----eccCCHH--HH-cCCccEEEC-----C
Confidence 345566665 56566662221 26889876 788888776 4444 3333333 23 67 448884 4
Q ss_pred cCHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 012594 405 ITRQEIQRQVKALLNDG--GIKANALKMKQMARKSLVEGGSSFRNFESFVSQLK 456 (460)
Q Consensus 405 ~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 456 (460)
.+.++++++|.++|+=+ +-+++.+++.+.+.+ .+...=+++|+++|+
T Consensus 425 ~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~-----~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 425 WDIEEVADAIHEALTMPPEERKERHARLREYVRE-----HDVQWWAESFLRDLK 473 (474)
T ss_dssp T-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh-----CCHHHHHHHHHHHhh
Confidence 78999999999999743 567777777777775 466677788887775
No 500
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.80 E-value=51 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=29.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012594 5 PHVLVIPFPAQGHAGPLMKLSTKIAEHGIKVTFVSTEH 42 (460)
Q Consensus 5 ~~Il~~~~~~~gH~~p~~~La~~L~~rGh~V~~~~~~~ 42 (460)
++|.++-.|++| .+||..|++.||+|++-...+
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 479999989888 589999999999999998764
Done!