Query 012596
Match_columns 460
No_of_seqs 299 out of 2254
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 9E-59 2E-63 455.5 37.2 329 127-459 1-329 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 2.5E-52 5.4E-57 423.2 36.3 327 126-457 10-359 (365)
3 PRK12439 NAD(P)H-dependent gly 100.0 7.9E-52 1.7E-56 419.7 38.5 330 126-460 6-336 (341)
4 TIGR03376 glycerol3P_DH glycer 100.0 9.8E-51 2.1E-55 409.0 34.7 318 129-451 1-342 (342)
5 PRK14620 NAD(P)H-dependent gly 100.0 1.6E-45 3.6E-50 371.7 36.8 322 128-453 1-326 (326)
6 PRK14618 NAD(P)H-dependent gly 100.0 5.1E-44 1.1E-48 361.1 37.9 326 124-459 1-328 (328)
7 PRK00094 gpsA NAD(P)H-dependen 100.0 5.5E-43 1.2E-47 352.4 36.7 325 127-454 1-325 (325)
8 PRK14619 NAD(P)H-dependent gly 100.0 1.5E-42 3.2E-47 347.5 34.4 303 127-460 4-307 (308)
9 KOG2711 Glycerol-3-phosphate d 100.0 5.6E-40 1.2E-44 318.5 29.3 326 126-456 20-369 (372)
10 COG2084 MmsB 3-hydroxyisobutyr 100.0 1E-29 2.2E-34 248.2 20.7 268 128-451 1-285 (286)
11 PRK06249 2-dehydropantoate 2-r 100.0 1.1E-27 2.4E-32 240.5 22.9 285 126-441 4-308 (313)
12 PRK06522 2-dehydropantoate 2-r 100.0 2.9E-27 6.3E-32 235.8 22.8 283 128-442 1-298 (304)
13 PRK12921 2-dehydropantoate 2-r 100.0 1.6E-26 3.5E-31 230.8 24.2 283 128-441 1-300 (305)
14 COG1893 ApbA Ketopantoate redu 99.9 7E-27 1.5E-31 233.2 20.5 288 128-442 1-300 (307)
15 PRK08229 2-dehydropantoate 2-r 99.9 3.9E-26 8.5E-31 231.7 26.2 287 127-440 2-315 (341)
16 KOG0409 Predicted dehydrogenas 99.9 2E-26 4.3E-31 221.3 19.5 272 127-454 35-323 (327)
17 PRK05708 2-dehydropantoate 2-r 99.9 2.2E-26 4.8E-31 230.2 20.3 282 127-440 2-295 (305)
18 PRK15461 NADH-dependent gamma- 99.9 4.6E-25 1E-29 219.8 21.9 270 128-453 2-288 (296)
19 PRK15059 tartronate semialdehy 99.9 1.8E-24 3.9E-29 215.0 21.4 274 128-456 1-288 (292)
20 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 1.1E-24 2.3E-29 197.4 16.1 156 129-288 1-156 (157)
21 TIGR01692 HIBADH 3-hydroxyisob 99.9 5E-24 1.1E-28 211.6 20.1 269 132-450 1-286 (288)
22 TIGR00745 apbA_panE 2-dehydrop 99.9 1E-23 2.2E-28 209.0 20.3 276 137-441 1-290 (293)
23 PRK11559 garR tartronate semia 99.9 4.5E-23 9.8E-28 205.4 22.2 275 127-454 2-289 (296)
24 TIGR03026 NDP-sugDHase nucleot 99.9 1.5E-22 3.1E-27 210.8 25.1 282 128-453 1-306 (411)
25 TIGR01505 tartro_sem_red 2-hyd 99.9 1.1E-22 2.3E-27 202.3 20.7 269 129-453 1-285 (291)
26 PF07479 NAD_Gly3P_dh_C: NAD-d 99.9 9.4E-24 2E-28 188.6 10.5 145 307-451 1-149 (149)
27 PLN02350 phosphogluconate dehy 99.9 1.8E-22 3.9E-27 212.1 20.3 268 127-444 6-300 (493)
28 PRK12490 6-phosphogluconate de 99.9 4.2E-22 9.2E-27 198.8 22.0 259 128-439 1-272 (299)
29 PLN02858 fructose-bisphosphate 99.9 2.8E-22 6E-27 232.8 23.1 271 126-452 3-292 (1378)
30 PRK09599 6-phosphogluconate de 99.9 5.1E-21 1.1E-25 191.3 22.9 274 128-451 1-288 (301)
31 PLN02858 fructose-bisphosphate 99.9 3.5E-21 7.5E-26 223.7 22.9 273 127-453 324-613 (1378)
32 COG1004 Ugd Predicted UDP-gluc 99.9 1.2E-19 2.7E-24 181.3 23.7 276 128-455 1-306 (414)
33 TIGR00872 gnd_rel 6-phosphoglu 99.8 1.9E-19 4E-24 179.7 23.2 275 128-452 1-287 (298)
34 PTZ00142 6-phosphogluconate de 99.8 1.3E-19 2.8E-24 190.3 21.2 206 127-367 1-217 (470)
35 PRK15182 Vi polysaccharide bio 99.8 4.6E-19 1E-23 184.6 20.8 277 127-452 6-302 (425)
36 PF03446 NAD_binding_2: NAD bi 99.8 1.5E-19 3.2E-24 164.8 14.1 155 127-304 1-158 (163)
37 PRK11064 wecC UDP-N-acetyl-D-m 99.8 9.7E-19 2.1E-23 182.0 21.6 273 126-451 2-303 (415)
38 PLN02353 probable UDP-glucose 99.8 4.9E-18 1.1E-22 178.5 23.7 282 127-452 1-315 (473)
39 PRK15057 UDP-glucose 6-dehydro 99.8 6.5E-18 1.4E-22 174.0 22.0 269 128-453 1-293 (388)
40 TIGR00873 gnd 6-phosphoglucona 99.8 7.3E-18 1.6E-22 177.1 19.8 203 129-367 1-214 (467)
41 PLN02688 pyrroline-5-carboxyla 99.7 3.3E-16 7.2E-21 153.6 19.5 252 128-440 1-259 (266)
42 COG0677 WecC UDP-N-acetyl-D-ma 99.7 4.2E-16 9.2E-21 155.5 20.1 265 127-437 9-297 (436)
43 PRK07634 pyrroline-5-carboxyla 99.7 9.5E-15 2.1E-19 141.4 23.8 162 124-308 1-165 (245)
44 PRK12491 pyrroline-5-carboxyla 99.7 7.9E-15 1.7E-19 144.5 23.1 158 127-308 2-163 (272)
45 PRK07679 pyrroline-5-carboxyla 99.7 4.1E-15 8.9E-20 147.1 20.6 199 126-367 2-205 (279)
46 PRK09287 6-phosphogluconate de 99.7 1.3E-15 2.9E-20 159.5 16.6 193 138-367 1-206 (459)
47 PRK07680 late competence prote 99.6 4.9E-14 1.1E-18 139.0 23.5 159 128-310 1-162 (273)
48 PRK06129 3-hydroxyacyl-CoA deh 99.6 6.3E-14 1.4E-18 140.6 22.7 255 127-438 2-276 (308)
49 PRK12557 H(2)-dependent methyl 99.6 7.2E-15 1.6E-19 148.8 15.3 200 128-366 1-234 (342)
50 COG0345 ProC Pyrroline-5-carbo 99.6 1.3E-13 2.7E-18 134.1 20.0 195 127-366 1-199 (266)
51 PRK07531 bifunctional 3-hydrox 99.6 1.1E-13 2.4E-18 147.4 20.7 203 126-367 3-216 (495)
52 PRK11880 pyrroline-5-carboxyla 99.6 5.1E-13 1.1E-17 131.1 23.0 154 127-306 2-158 (267)
53 PRK06928 pyrroline-5-carboxyla 99.6 3.9E-13 8.5E-18 132.9 21.5 159 127-308 1-163 (277)
54 PRK06130 3-hydroxybutyryl-CoA 99.6 3E-13 6.4E-18 135.8 19.9 202 124-366 1-214 (311)
55 TIGR01915 npdG NADPH-dependent 99.5 2.9E-13 6.3E-18 129.2 18.0 175 128-310 1-191 (219)
56 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 1.3E-13 2.8E-18 128.2 14.3 163 128-295 1-185 (185)
57 PRK08507 prephenate dehydrogen 99.5 8.9E-13 1.9E-17 130.2 19.2 173 128-320 1-180 (275)
58 PTZ00431 pyrroline carboxylate 99.5 1.9E-12 4.2E-17 126.8 21.1 152 126-308 2-156 (260)
59 PRK07417 arogenate dehydrogena 99.5 7.8E-13 1.7E-17 130.8 17.4 171 128-319 1-178 (279)
60 PRK12480 D-lactate dehydrogena 99.5 1.5E-13 3.3E-18 138.8 11.5 146 65-240 90-241 (330)
61 COG1023 Gnd Predicted 6-phosph 99.5 2.6E-12 5.6E-17 120.4 17.9 196 128-361 1-200 (300)
62 PRK09260 3-hydroxybutyryl-CoA 99.5 9.5E-13 2.1E-17 130.8 15.9 167 128-311 2-185 (288)
63 COG1052 LdhA Lactate dehydroge 99.5 1.3E-13 2.9E-18 138.4 9.4 160 64-249 86-251 (324)
64 PRK06476 pyrroline-5-carboxyla 99.5 4E-12 8.6E-17 124.3 18.4 190 128-366 1-191 (258)
65 PF03807 F420_oxidored: NADP o 99.4 5.2E-13 1.1E-17 110.3 9.6 93 129-235 1-96 (96)
66 COG2085 Predicted dinucleotide 99.4 2.2E-12 4.8E-17 120.0 14.6 164 127-309 1-181 (211)
67 PRK08655 prephenate dehydrogen 99.4 5.4E-12 1.2E-16 132.3 19.2 163 128-312 1-167 (437)
68 PF02558 ApbA: Ketopantoate re 99.4 4.1E-13 8.9E-18 120.2 9.1 115 130-253 1-115 (151)
69 PRK08293 3-hydroxybutyryl-CoA 99.4 6.5E-12 1.4E-16 124.8 16.8 198 126-364 2-217 (287)
70 PLN02545 3-hydroxybutyryl-CoA 99.4 2.3E-11 5E-16 121.3 20.0 170 124-311 1-187 (295)
71 PRK05808 3-hydroxybutyryl-CoA 99.4 2.1E-11 4.5E-16 120.8 19.5 198 126-363 2-213 (282)
72 PRK11199 tyrA bifunctional cho 99.4 8.7E-12 1.9E-16 128.3 16.5 176 101-315 71-249 (374)
73 PRK07530 3-hydroxybutyryl-CoA 99.4 1.5E-11 3.2E-16 122.4 17.5 171 124-310 1-186 (292)
74 PRK06035 3-hydroxyacyl-CoA deh 99.4 2.3E-12 5E-17 128.2 11.3 171 126-311 2-189 (291)
75 PRK08605 D-lactate dehydrogena 99.4 1.1E-12 2.4E-17 132.8 8.5 148 65-240 90-243 (332)
76 PRK07502 cyclohexadienyl dehyd 99.4 2.6E-11 5.7E-16 121.6 18.2 166 127-312 6-183 (307)
77 PLN02256 arogenate dehydrogena 99.4 5.7E-11 1.2E-15 118.8 19.5 164 126-315 35-211 (304)
78 PRK07574 formate dehydrogenase 99.3 6E-12 1.3E-16 129.2 12.2 151 65-240 135-291 (385)
79 PRK05479 ketol-acid reductoiso 99.3 5.9E-11 1.3E-15 119.1 17.9 150 126-302 16-175 (330)
80 PRK13243 glyoxylate reductase; 99.3 4.2E-12 9E-17 128.7 9.8 153 65-240 88-247 (333)
81 PRK06545 prephenate dehydrogen 99.3 2.2E-11 4.8E-16 124.8 14.8 164 128-308 1-174 (359)
82 PRK07066 3-hydroxybutyryl-CoA 99.3 7.3E-11 1.6E-15 118.6 17.9 199 126-364 6-216 (321)
83 PLN03139 formate dehydrogenase 99.3 9.8E-12 2.1E-16 127.6 11.7 152 64-240 141-298 (386)
84 COG0362 Gnd 6-phosphogluconate 99.3 6.3E-11 1.4E-15 118.3 16.7 202 127-366 3-217 (473)
85 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.3 7.1E-11 1.5E-15 125.7 18.2 197 126-366 4-218 (503)
86 PRK08268 3-hydroxy-acyl-CoA de 99.3 1.4E-10 3E-15 123.8 20.3 197 127-366 7-220 (507)
87 TIGR00465 ilvC ketol-acid redu 99.3 1.6E-10 3.4E-15 116.0 19.2 149 127-302 3-161 (314)
88 COG0111 SerA Phosphoglycerate 99.3 8.2E-12 1.8E-16 125.5 9.9 147 65-240 87-240 (324)
89 COG0287 TyrA Prephenate dehydr 99.3 1.3E-10 2.8E-15 114.5 17.6 167 127-314 3-177 (279)
90 PRK07819 3-hydroxybutyryl-CoA 99.3 1.4E-10 3E-15 115.2 17.0 196 127-363 5-217 (286)
91 PRK15409 bifunctional glyoxyla 99.2 4.7E-11 1E-15 120.4 9.8 152 64-240 86-243 (323)
92 PF10727 Rossmann-like: Rossma 99.2 2.9E-11 6.3E-16 105.2 7.0 98 126-238 9-109 (127)
93 TIGR01724 hmd_rel H2-forming N 99.2 1.6E-09 3.5E-14 106.9 19.9 213 128-360 1-254 (341)
94 PRK11790 D-3-phosphoglycerate 99.2 6.3E-11 1.4E-15 123.2 9.8 145 65-240 96-246 (409)
95 TIGR01327 PGDH D-3-phosphoglyc 99.2 6E-11 1.3E-15 127.2 9.3 148 65-240 83-236 (525)
96 PRK13581 D-3-phosphoglycerate 99.2 6.8E-11 1.5E-15 126.8 9.7 148 64-240 84-237 (526)
97 PRK08410 2-hydroxyacid dehydro 99.2 4.7E-11 1E-15 119.9 7.6 150 65-240 84-239 (311)
98 PLN02306 hydroxypyruvate reduc 99.2 1.2E-10 2.5E-15 120.0 10.2 166 64-240 106-279 (386)
99 PRK14806 bifunctional cyclohex 99.1 1.2E-09 2.5E-14 122.3 18.0 164 127-307 3-176 (735)
100 PLN02712 arogenate dehydrogena 99.1 2.3E-09 5E-14 117.7 19.8 167 126-316 51-228 (667)
101 PRK06932 glycerate dehydrogena 99.1 1.1E-10 2.3E-15 117.4 8.4 149 65-240 86-240 (314)
102 PRK15469 ghrA bifunctional gly 99.1 1.8E-10 3.8E-15 115.7 9.7 145 66-240 83-233 (312)
103 PRK06487 glycerate dehydrogena 99.1 1.8E-10 3.9E-15 116.0 9.6 149 64-240 86-240 (317)
104 PF02737 3HCDH_N: 3-hydroxyacy 99.1 9.6E-10 2.1E-14 101.8 13.6 165 129-308 1-179 (180)
105 PLN02712 arogenate dehydrogena 99.1 2.2E-09 4.7E-14 117.9 18.3 164 126-313 368-542 (667)
106 KOG2666 UDP-glucose/GDP-mannos 99.1 1.9E-09 4.2E-14 104.7 15.4 191 127-321 1-221 (481)
107 PRK06436 glycerate dehydrogena 99.1 4E-10 8.6E-15 112.6 9.9 149 65-249 70-224 (303)
108 PLN02928 oxidoreductase family 99.0 8.1E-10 1.8E-14 112.5 10.1 158 65-240 103-269 (347)
109 PRK08818 prephenate dehydrogen 99.0 7.4E-09 1.6E-13 105.9 16.5 158 126-317 3-164 (370)
110 TIGR00112 proC pyrroline-5-car 99.0 5.6E-08 1.2E-12 94.5 19.9 134 153-309 10-144 (245)
111 KOG0069 Glyoxylate/hydroxypyru 99.0 1.8E-09 4E-14 107.8 9.3 159 64-249 104-268 (336)
112 PRK00257 erythronate-4-phospha 98.9 2.6E-09 5.6E-14 109.7 9.1 129 65-240 79-214 (381)
113 PRK15438 erythronate-4-phospha 98.9 2.5E-09 5.4E-14 109.6 8.6 129 65-240 79-214 (378)
114 COG1250 FadB 3-hydroxyacyl-CoA 98.9 1.8E-08 3.9E-13 100.1 13.5 171 126-311 2-186 (307)
115 PRK02318 mannitol-1-phosphate 98.9 3.9E-09 8.5E-14 109.0 9.0 223 128-363 1-268 (381)
116 TIGR02440 FadJ fatty oxidation 98.9 2.9E-08 6.2E-13 110.1 16.2 171 127-312 304-489 (699)
117 PF02826 2-Hacid_dh_C: D-isome 98.9 7.9E-09 1.7E-13 95.5 9.7 98 126-240 35-134 (178)
118 PF08546 ApbA_C: Ketopantoate 98.9 1E-08 2.3E-13 89.0 9.5 117 308-440 1-123 (125)
119 PRK11730 fadB multifunctional 98.9 3.9E-08 8.4E-13 109.3 16.4 171 127-312 313-497 (715)
120 KOG2653 6-phosphogluconate deh 98.9 7E-08 1.5E-12 95.4 16.1 203 127-366 6-221 (487)
121 TIGR02437 FadB fatty oxidation 98.9 5.1E-08 1.1E-12 108.2 16.9 171 127-312 313-497 (714)
122 PRK11154 fadJ multifunctional 98.9 3.5E-08 7.5E-13 109.6 15.6 171 127-312 309-494 (708)
123 PRK13403 ketol-acid reductoiso 98.8 2.2E-08 4.8E-13 99.6 11.0 96 126-239 15-111 (335)
124 TIGR02441 fa_ox_alpha_mit fatt 98.8 5.7E-08 1.2E-12 108.2 14.8 171 126-311 334-518 (737)
125 PF07991 IlvN: Acetohydroxy ac 98.8 2.7E-08 5.8E-13 89.3 9.2 94 126-237 3-98 (165)
126 PRK08269 3-hydroxybutyryl-CoA 98.7 1.4E-07 3E-12 95.0 12.8 186 138-366 1-213 (314)
127 PF02153 PDH: Prephenate dehyd 98.7 5.5E-07 1.2E-11 88.2 14.8 156 142-315 1-165 (258)
128 KOG0068 D-3-phosphoglycerate d 98.6 7.8E-08 1.7E-12 94.7 7.4 147 65-240 91-243 (406)
129 KOG3124 Pyrroline-5-carboxylat 98.6 9.1E-07 2E-11 84.5 13.9 159 128-310 1-163 (267)
130 KOG2380 Prephenate dehydrogena 98.5 1.2E-06 2.6E-11 86.5 12.7 159 124-304 49-216 (480)
131 PRK13304 L-aspartate dehydroge 98.5 1.4E-06 3.1E-11 85.6 12.1 93 127-235 1-94 (265)
132 PRK06444 prephenate dehydrogen 98.5 2.2E-06 4.7E-11 80.4 12.6 126 128-315 1-128 (197)
133 PRK13302 putative L-aspartate 98.4 1.6E-06 3.4E-11 85.6 10.6 94 126-234 5-99 (271)
134 COG4007 Predicted dehydrogenas 98.4 1.7E-05 3.6E-10 75.8 16.4 162 127-307 1-194 (340)
135 TIGR02853 spore_dpaA dipicolin 98.4 1.9E-06 4.1E-11 85.7 9.8 91 127-234 151-241 (287)
136 PRK06223 malate dehydrogenase; 98.3 3E-06 6.5E-11 85.0 11.2 105 127-236 2-122 (307)
137 cd01065 NAD_bind_Shikimate_DH 98.3 1.3E-06 2.9E-11 78.2 7.6 98 126-234 18-117 (155)
138 cd05297 GH4_alpha_glucosidase_ 98.3 2.1E-06 4.6E-11 89.9 9.1 78 128-209 1-84 (423)
139 TIGR01763 MalateDH_bact malate 98.3 6E-06 1.3E-10 82.8 11.2 102 128-236 2-121 (305)
140 PF00056 Ldh_1_N: lactate/mala 98.2 8.5E-06 1.8E-10 72.4 9.6 116 128-253 1-133 (141)
141 PF01113 DapB_N: Dihydrodipico 98.2 6.3E-06 1.4E-10 71.6 8.1 103 128-240 1-105 (124)
142 PRK14194 bifunctional 5,10-met 98.2 4.9E-06 1.1E-10 82.6 7.6 72 126-233 158-231 (301)
143 PF01408 GFO_IDH_MocA: Oxidore 98.2 3.5E-05 7.5E-10 65.8 12.0 81 128-221 1-84 (120)
144 PRK06141 ornithine cyclodeamin 98.1 8.2E-06 1.8E-10 82.2 9.3 93 127-233 125-218 (314)
145 PRK08306 dipicolinate synthase 98.1 1.4E-05 3.1E-10 79.8 10.9 91 127-234 152-242 (296)
146 cd05213 NAD_bind_Glutamyl_tRNA 98.1 1.9E-05 4.2E-10 79.5 11.5 96 126-234 177-274 (311)
147 COG0059 IlvC Ketol-acid reduct 98.1 0.00021 4.5E-09 70.1 17.7 96 126-239 17-114 (338)
148 PTZ00082 L-lactate dehydrogena 98.1 1.6E-05 3.5E-10 80.3 10.5 105 125-236 4-131 (321)
149 PTZ00117 malate dehydrogenase; 98.1 2E-05 4.4E-10 79.6 11.0 104 126-236 4-125 (319)
150 PF14833 NAD_binding_11: NAD-b 98.1 1.5E-06 3.2E-11 75.2 1.6 95 328-439 2-103 (122)
151 PRK05225 ketol-acid reductoiso 98.0 7.8E-06 1.7E-10 84.7 6.8 95 126-238 35-135 (487)
152 cd05293 LDH_1 A subgroup of L- 98.0 4.8E-05 1E-09 76.6 11.5 105 127-236 3-123 (312)
153 PF01488 Shikimate_DH: Shikima 98.0 2E-05 4.2E-10 69.5 7.6 96 126-233 11-109 (135)
154 PRK14188 bifunctional 5,10-met 98.0 1.5E-05 3.3E-10 79.2 7.5 71 126-233 157-230 (296)
155 cd00650 LDH_MDH_like NAD-depen 97.9 2.8E-05 6.1E-10 76.3 8.4 101 130-234 1-120 (263)
156 COG1748 LYS9 Saccharopine dehy 97.9 3.9E-05 8.4E-10 78.8 9.6 85 127-217 1-86 (389)
157 TIGR02371 ala_DH_arch alanine 97.9 4.5E-05 9.7E-10 77.3 9.8 95 127-233 128-222 (325)
158 cd05292 LDH_2 A subgroup of L- 97.9 7.5E-05 1.6E-09 75.1 11.1 99 128-234 1-117 (308)
159 cd05291 HicDH_like L-2-hydroxy 97.9 8.5E-05 1.8E-09 74.6 11.3 102 128-235 1-119 (306)
160 COG0569 TrkA K+ transport syst 97.9 5.4E-05 1.2E-09 72.6 9.4 96 128-234 1-102 (225)
161 KOG2304 3-hydroxyacyl-CoA dehy 97.9 3.8E-05 8.1E-10 72.2 7.6 171 124-311 8-200 (298)
162 PTZ00075 Adenosylhomocysteinas 97.9 4.7E-05 1E-09 79.9 8.9 157 38-235 177-343 (476)
163 cd01339 LDH-like_MDH L-lactate 97.9 6E-05 1.3E-09 75.4 9.3 99 130-235 1-117 (300)
164 PRK00048 dihydrodipicolinate r 97.8 9.1E-05 2E-09 72.5 10.0 96 127-240 1-98 (257)
165 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 0.00015 3.3E-09 68.3 10.8 90 126-237 27-119 (200)
166 PRK15076 alpha-galactosidase; 97.8 9.5E-05 2.1E-09 77.7 9.7 80 127-208 1-84 (431)
167 PLN00203 glutamyl-tRNA reducta 97.8 0.00012 2.7E-09 78.3 10.5 99 127-234 266-370 (519)
168 PRK08618 ornithine cyclodeamin 97.8 0.00012 2.5E-09 74.3 9.5 94 127-233 127-221 (325)
169 TIGR00936 ahcY adenosylhomocys 97.8 0.00023 4.9E-09 73.9 11.6 91 125-235 193-284 (406)
170 smart00859 Semialdhyde_dh Semi 97.8 0.00012 2.7E-09 63.0 8.2 98 129-236 1-102 (122)
171 PRK00066 ldh L-lactate dehydro 97.7 0.00022 4.9E-09 71.9 11.2 101 127-234 6-123 (315)
172 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00018 3.8E-09 65.1 9.3 91 122-233 18-110 (162)
173 COG1712 Predicted dinucleotide 97.7 0.00045 9.7E-09 65.1 12.1 96 128-239 1-97 (255)
174 cd00300 LDH_like L-lactate deh 97.7 0.0002 4.3E-09 71.7 10.5 100 130-234 1-116 (300)
175 PRK05476 S-adenosyl-L-homocyst 97.7 0.00021 4.5E-09 74.6 10.7 89 126-234 211-300 (425)
176 PRK05442 malate dehydrogenase; 97.7 0.00018 4E-09 72.7 9.5 108 124-237 1-134 (326)
177 TIGR00036 dapB dihydrodipicoli 97.7 0.00043 9.3E-09 68.1 11.7 125 127-269 1-129 (266)
178 PRK07340 ornithine cyclodeamin 97.7 0.00028 6.1E-09 70.8 10.6 92 127-233 125-217 (304)
179 PRK00045 hemA glutamyl-tRNA re 97.7 0.00016 3.5E-09 75.9 9.0 97 126-234 181-281 (423)
180 PLN00112 malate dehydrogenase 97.7 0.00023 5.1E-09 74.5 10.0 107 126-236 99-229 (444)
181 PRK13303 L-aspartate dehydroge 97.6 0.00038 8.3E-09 68.5 11.0 93 127-235 1-94 (265)
182 PRK06407 ornithine cyclodeamin 97.6 0.00028 6E-09 70.8 9.8 96 127-233 117-212 (301)
183 TIGR01035 hemA glutamyl-tRNA r 97.6 0.00037 7.9E-09 73.1 10.8 96 127-234 180-278 (417)
184 cd05294 LDH-like_MDH_nadp A la 97.6 0.00034 7.4E-09 70.4 9.9 107 128-237 1-125 (309)
185 PRK06823 ornithine cyclodeamin 97.6 0.00042 9E-09 69.9 10.4 95 127-233 128-222 (315)
186 PF01118 Semialdhyde_dh: Semia 97.6 0.00019 4.2E-09 61.8 6.9 97 129-236 1-100 (121)
187 PRK14179 bifunctional 5,10-met 97.6 0.00015 3.3E-09 71.5 6.9 72 126-233 157-230 (284)
188 PRK07589 ornithine cyclodeamin 97.6 0.00028 6.1E-09 71.9 9.1 97 127-233 129-225 (346)
189 PLN02494 adenosylhomocysteinas 97.6 0.00038 8.3E-09 73.1 10.2 90 126-234 253-342 (477)
190 COG2423 Predicted ornithine cy 97.6 0.00038 8.3E-09 70.3 9.7 96 127-233 130-225 (330)
191 PRK08291 ectoine utilization p 97.6 0.00032 7E-09 71.2 9.3 77 127-210 132-208 (330)
192 PLN02602 lactate dehydrogenase 97.6 0.00054 1.2E-08 70.0 10.9 104 128-236 38-157 (350)
193 TIGR00518 alaDH alanine dehydr 97.5 0.00021 4.5E-09 73.7 7.9 98 127-233 167-267 (370)
194 PRK09496 trkA potassium transp 97.5 0.00037 8E-09 73.5 9.9 85 128-221 1-87 (453)
195 PRK06046 alanine dehydrogenase 97.5 0.00032 6.9E-09 71.1 8.9 95 127-233 129-223 (326)
196 PF02423 OCD_Mu_crystall: Orni 97.5 0.0002 4.4E-09 72.1 7.2 98 127-234 128-225 (313)
197 PRK00436 argC N-acetyl-gamma-g 97.5 0.0017 3.6E-08 66.4 13.8 101 127-238 2-104 (343)
198 PRK13301 putative L-aspartate 97.5 0.0012 2.6E-08 64.4 12.0 95 127-239 2-99 (267)
199 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00074 1.6E-08 70.3 11.3 89 126-234 201-290 (413)
200 TIGR02354 thiF_fam2 thiamine b 97.5 0.00016 3.6E-09 68.1 5.9 35 126-161 20-54 (200)
201 COG0373 HemA Glutamyl-tRNA red 97.5 0.00056 1.2E-08 70.7 10.2 95 127-234 178-275 (414)
202 TIGR00507 aroE shikimate 5-deh 97.5 0.00039 8.4E-09 68.5 8.8 96 127-234 117-215 (270)
203 cd01338 MDH_choloroplast_like 97.5 0.00057 1.2E-08 69.1 9.9 104 127-236 2-131 (322)
204 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00065 1.4E-08 68.2 10.1 101 128-237 1-121 (310)
205 cd05290 LDH_3 A subgroup of L- 97.5 0.0009 2E-08 67.2 11.1 103 129-236 1-122 (307)
206 PTZ00325 malate dehydrogenase; 97.5 0.00058 1.3E-08 68.9 9.7 102 126-238 7-130 (321)
207 TIGR01921 DAP-DH diaminopimela 97.4 0.00035 7.7E-09 70.2 7.7 69 126-211 2-72 (324)
208 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.00045 9.8E-09 63.2 7.5 74 126-234 43-117 (168)
209 TIGR01759 MalateDH-SF1 malate 97.4 0.0014 3E-08 66.4 11.4 105 126-236 2-132 (323)
210 cd01078 NAD_bind_H4MPT_DH NADP 97.4 0.00078 1.7E-08 62.9 9.0 97 126-233 27-129 (194)
211 TIGR02992 ectoine_eutC ectoine 97.4 0.00067 1.4E-08 68.8 9.0 94 127-232 129-223 (326)
212 PRK08300 acetaldehyde dehydrog 97.4 0.0016 3.4E-08 65.0 11.3 93 124-233 1-101 (302)
213 PRK13940 glutamyl-tRNA reducta 97.4 0.00052 1.1E-08 71.7 8.3 74 127-211 181-254 (414)
214 PF10100 DUF2338: Uncharacteri 97.3 0.015 3.1E-07 59.6 17.8 232 127-363 1-275 (429)
215 COG0039 Mdh Malate/lactate deh 97.3 0.0011 2.3E-08 66.4 9.4 104 128-237 1-122 (313)
216 PRK04148 hypothetical protein; 97.3 0.0014 3E-08 57.6 8.6 96 127-234 17-112 (134)
217 PRK04207 glyceraldehyde-3-phos 97.2 0.0034 7.4E-08 64.0 12.3 101 127-232 1-108 (341)
218 PRK12549 shikimate 5-dehydroge 97.2 0.0011 2.4E-08 65.9 8.5 77 127-210 127-203 (284)
219 PRK06718 precorrin-2 dehydroge 97.2 0.0049 1.1E-07 58.2 12.3 81 126-219 9-90 (202)
220 TIGR01850 argC N-acetyl-gamma- 97.2 0.0013 2.9E-08 67.1 9.2 100 128-237 1-103 (346)
221 COG0673 MviM Predicted dehydro 97.2 0.0015 3.2E-08 66.0 9.3 97 126-238 2-102 (342)
222 TIGR01772 MDH_euk_gproteo mala 97.2 0.0018 4E-08 65.1 9.8 100 129-237 1-120 (312)
223 PRK06719 precorrin-2 dehydroge 97.2 0.0037 8.1E-08 56.6 10.8 79 126-219 12-90 (157)
224 PLN02819 lysine-ketoglutarate 97.2 0.0031 6.8E-08 72.4 12.5 82 125-216 567-665 (1042)
225 KOG2305 3-hydroxyacyl-CoA dehy 97.2 0.00038 8.3E-09 65.6 4.1 261 127-432 3-290 (313)
226 TIGR02356 adenyl_thiF thiazole 97.1 0.0017 3.6E-08 61.3 8.2 36 126-162 20-55 (202)
227 PRK05086 malate dehydrogenase; 97.1 0.0035 7.5E-08 63.2 10.5 102 128-237 1-122 (312)
228 PRK11579 putative oxidoreducta 97.1 0.0045 9.7E-08 63.2 11.3 94 124-237 1-98 (346)
229 PF13460 NAD_binding_10: NADH( 97.1 0.0023 4.9E-08 58.5 8.3 69 130-209 1-70 (183)
230 cd00704 MDH Malate dehydrogena 97.1 0.0026 5.7E-08 64.4 9.3 103 128-236 1-129 (323)
231 PF02254 TrkA_N: TrkA-N domain 97.0 0.0072 1.6E-07 51.1 10.6 89 130-231 1-94 (116)
232 cd01336 MDH_cytoplasmic_cytoso 97.0 0.0027 5.8E-08 64.3 9.0 104 127-236 2-131 (325)
233 TIGR01757 Malate-DH_plant mala 97.0 0.0045 9.7E-08 64.0 10.5 106 127-236 44-173 (387)
234 TIGR03215 ac_ald_DH_ac acetald 97.0 0.0067 1.4E-07 60.2 11.3 89 128-233 2-95 (285)
235 PRK12475 thiamine/molybdopteri 97.0 0.0032 7E-08 64.1 9.3 36 126-162 23-58 (338)
236 PRK00258 aroE shikimate 5-dehy 97.0 0.0034 7.3E-08 62.2 9.2 97 127-233 123-221 (278)
237 PLN02968 Probable N-acetyl-gam 97.0 0.0025 5.4E-08 65.9 8.3 100 126-236 37-137 (381)
238 TIGR00561 pntA NAD(P) transhyd 97.0 0.0043 9.4E-08 66.2 10.2 103 127-233 164-284 (511)
239 PF03435 Saccharop_dh: Sacchar 97.0 0.0027 5.9E-08 65.7 8.5 74 130-211 1-79 (386)
240 PRK05671 aspartate-semialdehyd 97.0 0.0028 6.1E-08 64.4 8.4 95 124-234 1-98 (336)
241 PRK14175 bifunctional 5,10-met 96.9 0.0027 5.8E-08 62.9 7.8 73 126-233 157-230 (286)
242 PRK06199 ornithine cyclodeamin 96.9 0.0036 7.8E-08 64.7 9.0 98 127-231 155-257 (379)
243 PRK09496 trkA potassium transp 96.9 0.0046 1E-07 65.1 10.0 94 127-230 231-328 (453)
244 PLN00106 malate dehydrogenase 96.9 0.0045 9.8E-08 62.6 9.3 100 127-237 18-139 (323)
245 TIGR01809 Shik-DH-AROM shikima 96.9 0.0034 7.3E-08 62.3 8.0 74 127-210 125-201 (282)
246 cd01487 E1_ThiF_like E1_ThiF_l 96.9 0.0041 8.8E-08 57.3 8.0 33 129-162 1-33 (174)
247 TIGR01771 L-LDH-NAD L-lactate 96.9 0.0049 1.1E-07 61.7 9.2 99 132-235 1-115 (299)
248 PRK08644 thiamine biosynthesis 96.9 0.002 4.4E-08 61.2 6.0 36 126-162 27-62 (212)
249 cd05191 NAD_bind_amino_acid_DH 96.9 0.0059 1.3E-07 49.3 7.9 34 126-160 22-55 (86)
250 COG0002 ArgC Acetylglutamate s 96.8 0.013 2.7E-07 59.1 11.7 159 127-298 2-167 (349)
251 PRK10669 putative cation:proto 96.8 0.0061 1.3E-07 66.4 10.4 93 128-233 418-515 (558)
252 PRK03659 glutathione-regulated 96.8 0.007 1.5E-07 66.5 10.7 94 127-233 400-498 (601)
253 PRK09310 aroDE bifunctional 3- 96.8 0.0042 9.1E-08 66.2 8.3 72 126-211 331-402 (477)
254 COG4408 Uncharacterized protei 96.7 0.1 2.2E-06 52.1 16.5 229 124-362 1-276 (431)
255 PRK14874 aspartate-semialdehyd 96.7 0.0049 1.1E-07 62.7 7.6 93 127-234 1-95 (334)
256 cd00757 ThiF_MoeB_HesA_family 96.7 0.0067 1.5E-07 58.3 8.1 36 126-162 20-55 (228)
257 COG2910 Putative NADH-flavin r 96.7 0.0037 8E-08 57.4 5.9 70 128-208 1-71 (211)
258 PF13380 CoA_binding_2: CoA bi 96.7 0.0087 1.9E-07 51.3 8.0 74 128-222 1-78 (116)
259 PRK06349 homoserine dehydrogen 96.6 0.005 1.1E-07 64.7 7.5 107 126-249 2-120 (426)
260 PRK06270 homoserine dehydrogen 96.6 0.016 3.4E-07 59.2 10.8 104 127-236 2-128 (341)
261 PF01262 AlaDh_PNT_C: Alanine 96.6 0.0026 5.5E-08 58.1 4.6 105 127-233 20-139 (168)
262 TIGR01381 E1_like_apg7 E1-like 96.6 0.0036 7.9E-08 67.9 6.2 35 126-161 337-371 (664)
263 TIGR01470 cysG_Nterm siroheme 96.6 0.032 7E-07 52.7 12.0 75 127-214 9-84 (205)
264 cd05311 NAD_bind_2_malic_enz N 96.5 0.013 2.9E-07 56.2 9.3 91 127-234 25-129 (226)
265 PRK14189 bifunctional 5,10-met 96.5 0.0063 1.4E-07 60.2 7.0 73 126-233 157-230 (285)
266 TIGR01758 MDH_euk_cyt malate d 96.5 0.01 2.3E-07 60.1 8.7 103 129-237 1-129 (324)
267 CHL00194 ycf39 Ycf39; Provisio 96.5 0.0057 1.2E-07 61.4 6.6 72 128-208 1-73 (317)
268 COG0289 DapB Dihydrodipicolina 96.5 0.029 6.4E-07 54.5 11.1 145 127-305 2-151 (266)
269 PRK09424 pntA NAD(P) transhydr 96.5 0.017 3.8E-07 61.8 10.5 105 127-233 165-285 (509)
270 PRK14192 bifunctional 5,10-met 96.5 0.0099 2.1E-07 59.0 8.1 73 126-233 158-231 (283)
271 PRK08328 hypothetical protein; 96.4 0.0089 1.9E-07 57.6 7.4 43 126-169 26-68 (231)
272 PRK03562 glutathione-regulated 96.4 0.013 2.7E-07 64.7 9.5 92 127-231 400-496 (621)
273 PRK14982 acyl-ACP reductase; P 96.4 0.011 2.3E-07 60.2 8.2 91 126-233 154-246 (340)
274 COG0686 Ald Alanine dehydrogen 96.4 0.0048 1E-07 61.0 5.4 97 127-233 168-268 (371)
275 PF02056 Glyco_hydro_4: Family 96.4 0.0035 7.5E-08 58.1 4.1 80 129-210 1-84 (183)
276 TIGR01761 thiaz-red thiazoliny 96.4 0.017 3.6E-07 59.0 9.5 70 126-209 2-72 (343)
277 cd01483 E1_enzyme_family Super 96.4 0.015 3.2E-07 51.4 8.1 33 129-162 1-33 (143)
278 cd01486 Apg7 Apg7 is an E1-lik 96.4 0.0069 1.5E-07 60.2 6.3 32 129-161 1-32 (307)
279 PRK08040 putative semialdehyde 96.3 0.0094 2E-07 60.6 7.3 95 124-234 1-98 (336)
280 PRK00683 murD UDP-N-acetylmura 96.3 0.011 2.3E-07 62.0 8.0 37 126-164 2-38 (418)
281 PRK05472 redox-sensing transcr 96.3 0.0079 1.7E-07 57.1 6.2 97 127-238 84-190 (213)
282 cd05212 NAD_bind_m-THF_DH_Cycl 96.3 0.019 4.2E-07 50.9 7.9 73 126-233 27-100 (140)
283 PRK07688 thiamine/molybdopteri 96.2 0.013 2.8E-07 59.7 7.4 36 126-162 23-58 (339)
284 PRK08664 aspartate-semialdehyd 96.2 0.031 6.7E-07 57.2 10.2 103 126-234 2-108 (349)
285 PRK05600 thiamine biosynthesis 96.2 0.017 3.7E-07 59.6 8.2 36 126-162 40-75 (370)
286 cd05298 GH4_GlvA_pagL_like Gly 96.1 0.011 2.4E-07 62.2 6.7 78 128-208 1-83 (437)
287 PRK10206 putative oxidoreducta 96.1 0.027 5.9E-07 57.5 9.4 79 127-218 1-83 (344)
288 PRK06153 hypothetical protein; 96.1 0.014 3.1E-07 59.9 7.2 110 126-238 175-303 (393)
289 PRK10792 bifunctional 5,10-met 96.1 0.019 4.1E-07 56.8 7.7 72 127-233 159-231 (285)
290 TIGR00978 asd_EA aspartate-sem 96.1 0.033 7.3E-07 56.8 9.7 102 128-234 1-105 (341)
291 PF02629 CoA_binding: CoA bind 96.1 0.032 7E-07 46.0 7.8 88 127-233 3-94 (96)
292 cd05197 GH4_glycoside_hydrolas 96.0 0.014 3.1E-07 61.2 7.0 79 128-208 1-83 (425)
293 PF02882 THF_DHG_CYH_C: Tetrah 96.0 0.023 4.9E-07 51.6 7.4 73 126-233 35-108 (160)
294 COG2344 AT-rich DNA-binding pr 96.0 0.017 3.8E-07 53.1 6.4 80 126-220 83-167 (211)
295 PF13241 NAD_binding_7: Putati 95.9 0.038 8.2E-07 46.2 7.9 86 126-233 6-91 (103)
296 TIGR02717 AcCoA-syn-alpha acet 95.9 0.059 1.3E-06 57.1 11.2 92 126-238 6-101 (447)
297 COG1064 AdhP Zn-dependent alco 95.9 0.065 1.4E-06 54.3 10.8 90 127-232 167-258 (339)
298 PRK08223 hypothetical protein; 95.9 0.027 5.8E-07 55.9 7.9 37 126-163 26-62 (287)
299 cd01485 E1-1_like Ubiquitin ac 95.9 0.03 6.5E-07 52.6 7.9 35 127-162 19-53 (198)
300 TIGR02355 moeB molybdopterin s 95.9 0.013 2.8E-07 56.8 5.5 37 126-163 23-59 (240)
301 PRK08762 molybdopterin biosynt 95.9 0.021 4.6E-07 59.0 7.3 35 126-161 134-168 (376)
302 cd05296 GH4_P_beta_glucosidase 95.9 0.021 4.6E-07 59.9 7.3 79 128-208 1-84 (419)
303 PRK14106 murD UDP-N-acetylmura 95.9 0.037 8.1E-07 58.3 9.3 69 126-208 4-77 (450)
304 PLN02383 aspartate semialdehyd 95.8 0.028 6.1E-07 57.4 7.8 92 127-234 7-101 (344)
305 PRK12548 shikimate 5-dehydroge 95.8 0.026 5.5E-07 56.3 7.2 79 127-209 126-209 (289)
306 PRK12749 quinate/shikimate deh 95.7 0.064 1.4E-06 53.4 9.9 75 127-209 124-206 (288)
307 PRK14191 bifunctional 5,10-met 95.7 0.036 7.7E-07 54.9 7.8 73 126-233 156-229 (285)
308 PRK05562 precorrin-2 dehydroge 95.7 0.21 4.5E-06 47.8 12.8 81 127-220 25-106 (223)
309 PRK06728 aspartate-semialdehyd 95.7 0.031 6.8E-07 57.0 7.5 90 127-234 5-100 (347)
310 PF05368 NmrA: NmrA-like famil 95.7 0.024 5.3E-07 54.0 6.4 71 130-209 1-74 (233)
311 PRK05690 molybdopterin biosynt 95.7 0.037 8.1E-07 53.8 7.8 36 126-162 31-66 (245)
312 COG0169 AroE Shikimate 5-dehyd 95.7 0.043 9.3E-07 54.4 8.2 95 127-233 126-226 (283)
313 cd01492 Aos1_SUMO Ubiquitin ac 95.6 0.053 1.2E-06 50.9 8.3 36 126-162 20-55 (197)
314 COG1648 CysG Siroheme synthase 95.6 0.23 5E-06 47.1 12.6 79 127-218 12-91 (210)
315 PRK05597 molybdopterin biosynt 95.5 0.037 8.1E-07 56.8 7.6 36 126-162 27-62 (355)
316 COG1486 CelF Alpha-galactosida 95.5 0.025 5.5E-07 58.9 6.3 81 126-208 2-86 (442)
317 TIGR03736 PRTRC_ThiF PRTRC sys 95.5 0.067 1.5E-06 51.9 8.8 40 123-162 7-55 (244)
318 PRK12809 putative oxidoreducta 95.5 0.038 8.3E-07 61.2 8.1 35 126-162 309-343 (639)
319 TIGR01296 asd_B aspartate-semi 95.5 0.029 6.2E-07 57.3 6.3 90 129-234 1-93 (339)
320 PF03447 NAD_binding_3: Homose 95.4 0.075 1.6E-06 45.2 7.9 88 134-238 1-95 (117)
321 PLN00141 Tic62-NAD(P)-related 95.4 0.046 9.9E-07 52.8 7.3 40 126-167 16-56 (251)
322 PF00070 Pyr_redox: Pyridine n 95.3 0.033 7.2E-07 44.0 5.0 33 129-163 1-33 (80)
323 PRK07878 molybdopterin biosynt 95.3 0.046 1E-06 56.9 7.4 95 126-221 41-154 (392)
324 PRK14178 bifunctional 5,10-met 95.3 0.057 1.2E-06 53.3 7.6 73 126-233 151-224 (279)
325 PRK12409 D-amino acid dehydrog 95.3 0.022 4.7E-07 59.2 5.0 33 128-162 2-34 (410)
326 PF00899 ThiF: ThiF family; I 95.3 0.026 5.6E-07 49.4 4.7 35 127-162 2-36 (135)
327 TIGR01546 GAPDH-II_archae glyc 95.3 0.1 2.2E-06 53.0 9.6 81 130-211 1-87 (333)
328 PF03059 NAS: Nicotianamine sy 95.3 0.059 1.3E-06 53.2 7.6 99 128-231 122-228 (276)
329 PRK14027 quinate/shikimate deh 95.3 0.089 1.9E-06 52.3 8.9 76 127-209 127-204 (283)
330 PRK05678 succinyl-CoA syntheta 95.2 0.2 4.3E-06 50.0 11.3 102 126-250 7-114 (291)
331 KOG1495 Lactate dehydrogenase 95.2 0.13 2.8E-06 50.1 9.4 106 127-238 20-142 (332)
332 PRK06392 homoserine dehydrogen 95.2 0.019 4.1E-07 58.1 4.0 107 128-238 1-121 (326)
333 PRK15116 sulfur acceptor prote 95.2 0.094 2E-06 51.6 8.7 37 126-163 29-65 (268)
334 KOG2741 Dimeric dihydrodiol de 95.2 0.18 4E-06 50.8 10.8 84 127-220 6-93 (351)
335 PRK06598 aspartate-semialdehyd 95.2 0.14 3.1E-06 52.6 10.3 92 127-234 1-99 (369)
336 PRK01710 murD UDP-N-acetylmura 95.1 0.067 1.4E-06 56.8 8.2 66 127-206 14-84 (458)
337 PRK11863 N-acetyl-gamma-glutam 95.1 0.092 2E-06 52.9 8.6 80 127-234 2-82 (313)
338 PRK00676 hemA glutamyl-tRNA re 95.0 0.07 1.5E-06 54.1 7.5 36 127-163 174-209 (338)
339 PRK03369 murD UDP-N-acetylmura 95.0 0.08 1.7E-06 56.7 8.4 67 127-207 12-78 (488)
340 PRK08163 salicylate hydroxylas 95.0 0.029 6.3E-07 57.9 4.9 38 124-163 1-38 (396)
341 PRK11908 NAD-dependent epimera 95.0 0.06 1.3E-06 54.6 6.9 38 127-166 1-40 (347)
342 PRK00141 murD UDP-N-acetylmura 94.9 0.095 2.1E-06 55.9 8.6 39 127-167 15-53 (473)
343 cd05211 NAD_bind_Glu_Leu_Phe_V 94.9 0.12 2.6E-06 49.4 8.2 96 126-236 22-130 (217)
344 PLN03075 nicotianamine synthas 94.9 0.28 6E-06 49.0 11.1 102 126-232 123-232 (296)
345 PRK12769 putative oxidoreducta 94.8 0.066 1.4E-06 59.5 7.4 35 126-162 326-360 (654)
346 COG0300 DltE Short-chain dehyd 94.8 0.28 6E-06 48.2 10.7 45 125-171 4-49 (265)
347 PRK12550 shikimate 5-dehydroge 94.8 0.092 2E-06 51.9 7.5 66 128-209 123-188 (272)
348 TIGR01019 sucCoAalpha succinyl 94.8 0.43 9.2E-06 47.5 12.2 94 126-239 5-101 (286)
349 PRK01438 murD UDP-N-acetylmura 94.8 0.13 2.9E-06 54.8 9.2 34 127-162 16-49 (480)
350 PRK14176 bifunctional 5,10-met 94.8 0.11 2.3E-06 51.6 7.8 73 126-233 163-236 (287)
351 PRK14183 bifunctional 5,10-met 94.8 0.087 1.9E-06 52.1 7.2 73 126-233 156-229 (281)
352 PRK06847 hypothetical protein; 94.7 0.037 8E-07 56.6 4.8 38 124-163 1-38 (375)
353 PRK00711 D-amino acid dehydrog 94.7 0.04 8.8E-07 57.2 5.1 34 128-163 1-34 (416)
354 PF00984 UDPG_MGDP_dh: UDP-glu 94.7 0.015 3.2E-07 48.2 1.4 85 333-437 8-92 (96)
355 TIGR01851 argC_other N-acetyl- 94.7 0.15 3.2E-06 51.2 8.7 79 128-234 2-81 (310)
356 PF03720 UDPG_MGDP_dh_C: UDP-g 94.7 0.18 3.9E-06 42.3 8.0 84 138-234 18-102 (106)
357 cd01079 NAD_bind_m-THF_DH NAD 94.7 0.08 1.7E-06 49.4 6.3 94 126-233 61-156 (197)
358 KOG0023 Alcohol dehydrogenase, 94.7 0.11 2.3E-06 51.9 7.5 94 126-232 181-278 (360)
359 cd01076 NAD_bind_1_Glu_DH NAD( 94.6 0.16 3.5E-06 48.7 8.5 97 126-236 30-139 (227)
360 PRK14190 bifunctional 5,10-met 94.6 0.12 2.6E-06 51.2 7.8 73 126-233 157-230 (284)
361 TIGR01318 gltD_gamma_fam gluta 94.6 0.1 2.2E-06 55.6 7.8 35 126-162 140-174 (467)
362 PLN02427 UDP-apiose/xylose syn 94.6 0.065 1.4E-06 55.3 6.1 79 126-207 13-94 (386)
363 PRK07411 hypothetical protein; 94.5 0.11 2.4E-06 54.0 7.7 94 126-220 37-149 (390)
364 COG1063 Tdh Threonine dehydrog 94.4 0.2 4.4E-06 51.2 9.2 94 129-231 171-267 (350)
365 cd01484 E1-2_like Ubiquitin ac 94.4 0.11 2.4E-06 50.2 6.8 33 129-162 1-33 (234)
366 PRK07877 hypothetical protein; 94.4 0.083 1.8E-06 58.9 6.7 93 126-219 106-216 (722)
367 COG5495 Uncharacterized conser 94.3 0.91 2E-05 43.4 12.3 89 127-233 10-99 (289)
368 PRK00421 murC UDP-N-acetylmura 94.3 0.15 3.1E-06 54.2 8.1 66 126-206 6-73 (461)
369 PRK14173 bifunctional 5,10-met 94.2 0.14 3E-06 50.8 7.3 73 126-233 154-227 (287)
370 PRK02006 murD UDP-N-acetylmura 94.2 0.16 3.4E-06 54.6 8.3 68 127-206 7-76 (498)
371 PRK07236 hypothetical protein; 94.2 0.061 1.3E-06 55.5 5.0 35 126-162 5-39 (386)
372 PLN02520 bifunctional 3-dehydr 94.2 0.17 3.6E-06 54.8 8.5 43 127-171 379-421 (529)
373 PRK05653 fabG 3-ketoacyl-(acyl 94.2 0.4 8.6E-06 45.3 10.3 40 127-168 5-45 (246)
374 PRK12814 putative NADPH-depend 94.2 0.094 2E-06 58.3 6.6 34 127-162 193-226 (652)
375 PLN03209 translocon at the inn 94.1 0.11 2.5E-06 56.2 6.9 42 126-169 79-121 (576)
376 PRK02472 murD UDP-N-acetylmura 94.1 0.17 3.7E-06 53.3 8.3 34 127-162 5-38 (447)
377 PRK14172 bifunctional 5,10-met 94.1 0.16 3.4E-06 50.2 7.3 73 126-233 157-230 (278)
378 PRK14169 bifunctional 5,10-met 94.1 0.16 3.4E-06 50.3 7.3 73 126-233 155-228 (282)
379 TIGR01373 soxB sarcosine oxida 94.1 0.066 1.4E-06 55.6 4.9 46 111-162 18-65 (407)
380 PRK06753 hypothetical protein; 94.1 0.063 1.4E-06 54.9 4.7 34 128-163 1-34 (373)
381 PRK14186 bifunctional 5,10-met 94.1 0.16 3.4E-06 50.7 7.3 73 126-233 157-230 (297)
382 KOG1502 Flavonol reductase/cin 94.0 0.12 2.5E-06 52.1 6.3 77 126-207 5-86 (327)
383 PRK12429 3-hydroxybutyrate deh 94.0 0.4 8.7E-06 45.8 10.0 42 126-169 3-45 (258)
384 PRK01390 murD UDP-N-acetylmura 94.0 0.15 3.2E-06 54.1 7.5 44 127-172 9-52 (460)
385 TIGR03466 HpnA hopanoid-associ 93.9 0.044 9.5E-07 54.6 3.2 72 128-208 1-73 (328)
386 PRK14177 bifunctional 5,10-met 93.9 0.17 3.8E-06 50.0 7.2 73 126-233 158-231 (284)
387 PRK14180 bifunctional 5,10-met 93.9 0.18 4E-06 49.8 7.4 73 126-233 157-230 (282)
388 PRK09186 flagellin modificatio 93.9 0.47 1E-05 45.4 10.2 43 126-170 3-46 (256)
389 PRK14166 bifunctional 5,10-met 93.9 0.18 3.9E-06 49.9 7.2 73 126-233 156-229 (282)
390 PRK08374 homoserine dehydrogen 93.9 0.11 2.3E-06 53.0 5.9 103 127-237 2-126 (336)
391 PRK06567 putative bifunctional 93.9 0.18 3.9E-06 57.8 8.1 34 126-161 382-415 (1028)
392 COG0460 ThrA Homoserine dehydr 93.8 0.19 4.1E-06 50.8 7.5 99 126-238 2-118 (333)
393 PRK05868 hypothetical protein; 93.8 0.07 1.5E-06 55.0 4.5 35 127-163 1-35 (372)
394 TIGR01745 asd_gamma aspartate- 93.8 0.42 9.2E-06 49.1 10.1 93 128-234 1-98 (366)
395 COG0499 SAM1 S-adenosylhomocys 93.8 0.15 3.3E-06 51.6 6.5 98 122-239 204-301 (420)
396 PRK07326 short chain dehydroge 93.8 0.44 9.4E-06 45.0 9.6 42 127-170 6-48 (237)
397 PRK11861 bifunctional prephena 93.8 0.45 9.7E-06 53.1 11.0 110 203-317 1-120 (673)
398 PRK14170 bifunctional 5,10-met 93.8 0.19 4.1E-06 49.8 7.1 73 126-233 156-229 (284)
399 PRK12771 putative glutamate sy 93.8 0.13 2.8E-06 56.0 6.7 34 126-161 136-169 (564)
400 COG0136 Asd Aspartate-semialde 93.7 0.43 9.4E-06 48.2 9.7 94 127-234 1-98 (334)
401 PRK05993 short chain dehydroge 93.7 0.17 3.6E-06 49.6 6.8 42 127-170 4-46 (277)
402 COG0665 DadA Glycine/D-amino a 93.7 0.088 1.9E-06 53.9 5.1 36 125-162 2-37 (387)
403 PRK06182 short chain dehydroge 93.7 0.14 3E-06 49.9 6.3 42 126-169 2-44 (273)
404 PLN02516 methylenetetrahydrofo 93.7 0.21 4.6E-06 49.8 7.4 73 126-233 166-239 (299)
405 PRK14573 bifunctional D-alanyl 93.6 0.18 3.9E-06 57.5 7.8 68 124-206 1-70 (809)
406 PLN02657 3,8-divinyl protochlo 93.6 0.075 1.6E-06 55.2 4.4 40 123-164 56-96 (390)
407 cd01491 Ube1_repeat1 Ubiquitin 93.6 0.8 1.7E-05 45.6 11.4 35 127-162 19-53 (286)
408 PRK05732 2-octaprenyl-6-methox 93.6 0.086 1.9E-06 54.2 4.8 34 126-161 2-38 (395)
409 PRK07454 short chain dehydroge 93.6 0.55 1.2E-05 44.6 10.0 42 126-169 5-47 (241)
410 PLN02214 cinnamoyl-CoA reducta 93.6 0.15 3.3E-06 51.8 6.4 75 127-208 10-90 (342)
411 PRK07831 short chain dehydroge 93.6 0.61 1.3E-05 45.0 10.4 42 126-169 16-59 (262)
412 PRK14187 bifunctional 5,10-met 93.5 0.22 4.8E-06 49.6 7.2 73 126-233 159-232 (294)
413 PLN02662 cinnamyl-alcohol dehy 93.5 0.18 4E-06 50.1 6.8 36 127-164 4-40 (322)
414 cd01489 Uba2_SUMO Ubiquitin ac 93.5 0.15 3.2E-06 51.3 6.1 33 129-162 1-33 (312)
415 PF13450 NAD_binding_8: NAD(P) 93.5 0.12 2.7E-06 39.7 4.3 29 132-162 1-29 (68)
416 PRK07494 2-octaprenyl-6-methox 93.5 0.092 2E-06 54.0 4.7 34 127-162 7-40 (388)
417 PRK14182 bifunctional 5,10-met 93.4 0.25 5.4E-06 48.9 7.4 73 126-233 156-229 (282)
418 PRK14193 bifunctional 5,10-met 93.4 0.23 5E-06 49.2 7.0 73 126-233 157-232 (284)
419 PRK14171 bifunctional 5,10-met 93.3 0.25 5.5E-06 49.0 7.3 73 126-233 158-231 (288)
420 PLN02616 tetrahydrofolate dehy 93.3 0.22 4.7E-06 50.8 6.9 73 126-233 230-303 (364)
421 PLN02897 tetrahydrofolate dehy 93.3 0.23 4.9E-06 50.4 7.0 73 126-233 213-286 (345)
422 PF01494 FAD_binding_3: FAD bi 93.3 0.11 2.3E-06 51.9 4.8 34 128-163 2-35 (356)
423 TIGR01723 hmd_TIGR 5,10-methen 93.3 4.4 9.5E-05 39.9 15.3 165 186-360 126-301 (340)
424 PRK12779 putative bifunctional 93.3 0.18 3.9E-06 58.3 7.0 34 127-162 306-339 (944)
425 PRK11259 solA N-methyltryptoph 93.3 0.11 2.3E-06 53.1 4.8 34 127-162 3-36 (376)
426 PRK10538 malonic semialdehyde 93.2 0.74 1.6E-05 44.1 10.3 40 128-169 1-41 (248)
427 PRK09242 tropinone reductase; 93.2 0.82 1.8E-05 43.9 10.7 42 127-170 9-51 (257)
428 PRK05866 short chain dehydroge 93.2 0.66 1.4E-05 46.0 10.2 42 127-170 40-82 (293)
429 PF01266 DAO: FAD dependent ox 93.2 0.13 2.9E-06 51.3 5.2 31 129-161 1-31 (358)
430 PRK07588 hypothetical protein; 93.2 0.1 2.3E-06 53.8 4.6 34 128-163 1-34 (391)
431 PRK08849 2-octaprenyl-3-methyl 93.2 0.11 2.4E-06 53.5 4.8 34 127-162 3-36 (384)
432 PRK12939 short chain dehydroge 93.2 0.8 1.7E-05 43.5 10.5 41 127-169 7-48 (250)
433 PRK06180 short chain dehydroge 93.2 0.22 4.8E-06 48.7 6.6 44 125-170 2-46 (277)
434 PRK14181 bifunctional 5,10-met 93.1 0.29 6.2E-06 48.6 7.2 75 126-233 152-229 (287)
435 PRK07538 hypothetical protein; 93.1 0.11 2.4E-06 54.1 4.6 34 128-163 1-34 (413)
436 PRK03803 murD UDP-N-acetylmura 93.1 0.31 6.7E-06 51.5 8.0 38 123-162 2-39 (448)
437 PRK08850 2-octaprenyl-6-methox 93.0 0.12 2.6E-06 53.7 4.8 35 125-161 2-36 (405)
438 COG0771 MurD UDP-N-acetylmuram 93.0 0.17 3.7E-06 53.3 5.8 36 127-164 7-42 (448)
439 PRK14174 bifunctional 5,10-met 93.0 0.34 7.3E-06 48.4 7.6 73 126-233 158-235 (295)
440 PRK14184 bifunctional 5,10-met 93.0 0.33 7.1E-06 48.2 7.5 73 126-233 156-233 (286)
441 COG1832 Predicted CoA-binding 92.9 0.65 1.4E-05 40.7 8.3 97 122-240 11-111 (140)
442 cd05312 NAD_bind_1_malic_enz N 92.9 0.92 2E-05 44.9 10.4 101 127-237 25-144 (279)
443 PLN02650 dihydroflavonol-4-red 92.9 0.25 5.4E-06 50.2 6.8 79 127-207 5-85 (351)
444 PRK12810 gltD glutamate syntha 92.9 0.3 6.5E-06 52.0 7.7 35 126-162 142-176 (471)
445 PRK08013 oxidoreductase; Provi 92.9 0.13 2.7E-06 53.5 4.6 35 127-163 3-37 (400)
446 COG0654 UbiH 2-polyprenyl-6-me 92.9 0.13 2.8E-06 53.2 4.7 33 127-161 2-34 (387)
447 PRK05875 short chain dehydroge 92.8 0.95 2.1E-05 44.0 10.6 42 126-169 6-48 (276)
448 PRK11728 hydroxyglutarate oxid 92.8 0.14 3E-06 53.1 4.8 34 127-162 2-37 (393)
449 TIGR03649 ergot_EASG ergot alk 92.8 0.1 2.2E-06 51.3 3.6 34 129-164 1-35 (285)
450 PRK08773 2-octaprenyl-3-methyl 92.7 0.14 3E-06 52.9 4.8 34 127-162 6-39 (392)
451 PLN02172 flavin-containing mon 92.7 0.14 2.9E-06 54.6 4.7 36 126-163 9-44 (461)
452 PRK13394 3-hydroxybutyrate deh 92.7 0.75 1.6E-05 44.0 9.6 42 127-170 7-49 (262)
453 KOG1399 Flavin-containing mono 92.5 0.13 2.8E-06 54.4 4.1 36 126-163 5-40 (448)
454 PRK07364 2-octaprenyl-6-methox 92.5 0.15 3.2E-06 52.9 4.6 34 127-162 18-51 (415)
455 PF03949 Malic_M: Malic enzyme 92.5 0.55 1.2E-05 45.8 8.1 102 127-237 25-145 (255)
456 cd08237 ribitol-5-phosphate_DH 92.5 1.1 2.4E-05 45.3 10.9 91 127-232 164-255 (341)
457 PRK08340 glucose-1-dehydrogena 92.5 0.93 2E-05 43.7 9.9 41 128-170 1-42 (259)
458 COG0493 GltD NADPH-dependent g 92.5 0.21 4.7E-06 52.9 5.8 35 127-163 123-157 (457)
459 cd08230 glucose_DH Glucose deh 92.4 0.91 2E-05 46.1 10.2 93 127-232 173-268 (355)
460 COG0026 PurK Phosphoribosylami 92.3 0.23 5E-06 50.6 5.5 77 127-218 1-84 (375)
461 COG0190 FolD 5,10-methylene-te 92.3 0.31 6.7E-06 48.0 6.2 72 126-233 155-228 (283)
462 PRK05884 short chain dehydroge 92.3 0.31 6.8E-06 46.1 6.3 41 128-170 1-42 (223)
463 PLN02896 cinnamyl-alcohol dehy 92.3 0.32 6.9E-06 49.5 6.7 41 127-169 10-51 (353)
464 PRK15181 Vi polysaccharide bio 92.3 0.29 6.2E-06 49.8 6.3 38 123-162 11-49 (348)
465 PRK00961 H(2)-dependent methyl 92.3 2.9 6.2E-05 41.1 12.5 159 186-360 128-303 (342)
466 TIGR03219 salicylate_mono sali 92.3 0.16 3.5E-06 52.9 4.5 34 128-163 1-35 (414)
467 PRK08017 oxidoreductase; Provi 92.3 0.35 7.6E-06 46.3 6.6 40 128-169 3-43 (256)
468 PRK14168 bifunctional 5,10-met 92.3 0.38 8.2E-06 48.0 6.9 75 126-233 160-237 (297)
469 PRK07208 hypothetical protein; 92.3 0.17 3.7E-06 53.7 4.8 37 124-162 1-37 (479)
470 TIGR03589 PseB UDP-N-acetylglu 92.2 0.31 6.6E-06 49.1 6.4 77 126-207 3-82 (324)
471 cd00762 NAD_bind_malic_enz NAD 92.2 0.84 1.8E-05 44.5 9.0 102 127-237 25-145 (254)
472 PRK14851 hypothetical protein; 92.2 0.27 5.9E-06 54.7 6.4 36 126-162 42-77 (679)
473 PRK07774 short chain dehydroge 92.2 1.1 2.4E-05 42.7 9.9 41 127-169 6-47 (250)
474 PRK13535 erythrose 4-phosphate 92.1 0.28 6.1E-06 49.9 5.9 91 127-217 1-109 (336)
475 PRK06949 short chain dehydroge 92.1 1.3 2.8E-05 42.4 10.3 43 126-170 8-51 (258)
476 PRK07806 short chain dehydroge 92.1 0.78 1.7E-05 43.7 8.8 34 127-162 6-40 (248)
477 PRK14852 hypothetical protein; 92.1 0.38 8.3E-06 55.1 7.4 36 126-162 331-366 (989)
478 PRK06617 2-octaprenyl-6-methox 92.0 0.18 4E-06 51.8 4.6 33 127-161 1-33 (374)
479 PRK13984 putative oxidoreducta 92.0 0.47 1E-05 52.2 8.0 35 126-162 282-316 (604)
480 PRK02705 murD UDP-N-acetylmura 92.0 0.59 1.3E-05 49.4 8.5 32 129-162 2-33 (459)
481 PLN00198 anthocyanidin reducta 92.0 0.31 6.8E-06 49.1 6.1 36 126-163 8-44 (338)
482 TIGR02360 pbenz_hydroxyl 4-hyd 91.9 0.21 4.6E-06 51.7 4.9 34 127-162 2-35 (390)
483 PRK07045 putative monooxygenas 91.9 0.2 4.3E-06 51.7 4.7 36 126-163 4-39 (388)
484 PTZ00187 succinyl-CoA syntheta 91.9 2.2 4.8E-05 43.0 11.9 106 125-249 27-136 (317)
485 PLN02477 glutamate dehydrogena 91.8 0.69 1.5E-05 48.3 8.5 99 126-237 205-315 (410)
486 PRK09880 L-idonate 5-dehydroge 91.8 1.2 2.5E-05 45.1 10.1 91 127-232 170-265 (343)
487 PRK09853 putative selenate red 91.8 0.48 1E-05 54.8 7.9 35 126-162 538-572 (1019)
488 cd00755 YgdL_like Family of ac 91.8 0.24 5.3E-06 47.7 4.8 35 127-162 11-45 (231)
489 PRK09126 hypothetical protein; 91.8 0.21 4.5E-06 51.4 4.7 34 127-162 3-36 (392)
490 PRK14185 bifunctional 5,10-met 91.8 0.42 9.1E-06 47.6 6.5 75 126-233 156-233 (293)
491 PRK06914 short chain dehydroge 91.8 1.3 2.8E-05 43.1 10.1 42 127-170 3-45 (280)
492 PRK07890 short chain dehydroge 91.7 1.3 2.9E-05 42.2 10.0 43 126-170 4-47 (258)
493 PRK06139 short chain dehydroge 91.7 1.3 2.8E-05 44.9 10.2 42 127-170 7-49 (330)
494 PF00185 OTCace: Aspartate/orn 91.6 1.1 2.4E-05 40.4 8.7 69 127-209 2-83 (158)
495 PRK07109 short chain dehydroge 91.6 1.4 3E-05 44.7 10.4 42 127-170 8-50 (334)
496 TIGR01377 soxA_mon sarcosine o 91.6 0.21 4.6E-06 51.0 4.5 32 129-162 2-33 (380)
497 PRK10637 cysG siroheme synthas 91.6 2 4.4E-05 45.6 12.0 76 126-214 11-87 (457)
498 PRK04308 murD UDP-N-acetylmura 91.6 0.6 1.3E-05 49.2 8.0 35 127-163 5-39 (445)
499 PRK06185 hypothetical protein; 91.6 0.22 4.8E-06 51.5 4.6 34 127-162 6-39 (407)
500 PRK07523 gluconate 5-dehydroge 91.5 1.4 3E-05 42.3 9.9 40 127-168 10-50 (255)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=9e-59 Score=455.54 Aligned_cols=329 Identities=46% Similarity=0.652 Sum_probs=320.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|+||+++|..|+++| |+|++|.|+++.++++++.+.|.+|+|+..+|.++.+++|+.++++++|+|+++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 479999999999999999999999 999999999999999999988999999999999999999999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
||++.++++++++.++++++.++|+++||+.+++.+.+++++++.+|.. ++++++||+++.|++++.++.+++++.|.
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~--~~~vLSGPs~A~EVa~g~pta~~vas~d~ 156 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN--PIAVLSGPSFAKEVAQGLPTAVVVASNDQ 156 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC--eEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence 9999999999999999999999999999999999999999999998863 48899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
+.+++++.+|++..|+++.++|+.|+++++++||++|+++|+.+++.+|+|...++++++++||.+++.++|.+++++++
T Consensus 157 ~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g 236 (329)
T COG0240 157 EAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG 236 (329)
T ss_pred HHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHH
Q 012596 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (460)
Q Consensus 367 ~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (460)
++|+||+++||++..|||+++|..+++|.+.++++..+++++||+++.+.++++++++|++||+.+++|++++++.+|++
T Consensus 237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~~~~~~~ 316 (329)
T COG0240 237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYEGLDPKE 316 (329)
T ss_pred cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccC
Q 012596 447 AVLELMSLPQVEE 459 (460)
Q Consensus 447 ~~~~l~~~~~~~~ 459 (460)
+++.|+.|+.+.|
T Consensus 317 ~~~~L~~r~~k~E 329 (329)
T COG0240 317 AIEELMGRDLKPE 329 (329)
T ss_pred HHHHHhccccCCC
Confidence 9999999999987
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-52 Score=423.25 Aligned_cols=327 Identities=28% Similarity=0.417 Sum_probs=307.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G-----~~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+.|||+|||+|+||+++|..|+++| ++++|.+|.|+++ .++.+++.+.|.+|+|+.++|.++.+++|+.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3589999999999999999999986 2379999999986 48999999999999999999999999999999
Q ss_pred hcCCCcEEEEccchhcHHHHHHHhhh--cCCCCCeEEEeccCCccchh--hhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~~~~~vl~~i~~--~l~~~~iIV~~~~Gi~~~~~--~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~ 271 (460)
+++++|+|+++||++.++++++++.+ .++++.++|++++|++.++. ..+++++++.++. ++.+++||+++.|+
T Consensus 90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A~Ev 166 (365)
T PTZ00345 90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVANDV 166 (365)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHHHHH
Confidence 99999999999999999999999998 78777899999999998875 6789999998863 67899999999999
Q ss_pred hccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 272 ~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
..+.++.+++++.|.+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+++++++|+|...+++.++++||.
T Consensus 167 a~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~ 246 (365)
T PTZ00345 167 AREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMK 246 (365)
T ss_pred HcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC--CCccccccccCCCceeeecccCCCccchHHHHhhCC---CChHHHHhhc--ccceehhhhHHHHHHHHHHc
Q 012596 352 WLATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG---EKLDDILSSM--NQVAEGVSTAGAVIALAQKY 424 (460)
Q Consensus 352 ~la~a~G--i~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g---~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~~ 424 (460)
++++++| .++++|++++|+||+++||++ +|||++|..+++| ++++++.+.+ ++++||..++..++++++++
T Consensus 247 ~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~ 324 (365)
T PTZ00345 247 LFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESH 324 (365)
T ss_pred HHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHc
Confidence 9999997 489999999999999999999 9999999999875 5788888776 89999999999999999999
Q ss_pred CC--CChHHHHHHHHHhcCCCHHHHHHHHhcCCCc
Q 012596 425 NV--KMPVLTAVARIIDNELTPKKAVLELMSLPQV 457 (460)
Q Consensus 425 gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~~ 457 (460)
++ ++|+.+++|+++.++.+|+++++.|++|+.+
T Consensus 325 ~i~~~~Pi~~~vy~il~~~~~~~~~~~~l~~r~~~ 359 (365)
T PTZ00345 325 DLKKEFPLFTVTYKIAFEGADPSSLIDVLSTNELR 359 (365)
T ss_pred CCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 99 8999999999999999999999999999875
No 3
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.9e-52 Score=419.73 Aligned_cols=330 Identities=38% Similarity=0.586 Sum_probs=310.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~-~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
++|||+|||+|+||+++|..|+++| +|++|.|++++++.+++.+.+..|++ +..++.++.+++|++++++++|+||
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 4689999999999999999999987 48899999999999999888878887 6677778888899988889999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
++||+++++++++++.+++++++++|+++||++.++.+.+++.+.+.++. ....++.||+++.++..|.++.+++++.
T Consensus 83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~ 160 (341)
T PRK12439 83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMP 160 (341)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence 99999999999999999999889999999999998888899999888764 3567899999999999999888888888
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012596 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~ 364 (460)
+.+..+.++++|+..+++++.++|+.|++|++++||++++++|+++++.+++|...+++.++++|+.++++++|.+++++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~ 240 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF 240 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCH
Q 012596 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTP 444 (460)
Q Consensus 365 ~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~ 444 (460)
++++|+||+++||++..+||+++|..+++|++.+++.+++++++||...++.++++++++|+++|+.+++|+++.++.+|
T Consensus 241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~~~~~~ 320 (341)
T PRK12439 241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVINHGSTV 320 (341)
T ss_pred cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccCC
Q 012596 445 KKAVLELMSLPQVEEV 460 (460)
Q Consensus 445 ~~~~~~l~~~~~~~~~ 460 (460)
+++++.|++||.+.|+
T Consensus 321 ~~~~~~l~~~~~~~e~ 336 (341)
T PRK12439 321 EQAYRGLIAEVPGHEV 336 (341)
T ss_pred HHHHHHHhcCCCCccc
Confidence 9999999999999884
No 4
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=9.8e-51 Score=409.04 Aligned_cols=318 Identities=34% Similarity=0.471 Sum_probs=301.3
Q ss_pred eEEEECcchHHHHHHHHHHhcC------CCCeEEEEeC-----CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKK------SQLKVYMLMR-----DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G------~~~~V~v~~r-----~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
||+|||+|+||+++|..|+++| ++++|++|.| +++..+.+++.+.+.+|+|+.++|.++.+++|+++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999987 4589999999 6677888888888999999999999999999999999
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc--hhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccC
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKL 275 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~--~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~ 275 (460)
+++|+||++||++.++++++++.+++++++++|+++||++.+ +...+++.+++.++. ++.+++||+++.|+.++.
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~ 157 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEK 157 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCC
Confidence 999999999999999999999999999889999999999988 888999999998853 688999999999999999
Q ss_pred CeEEEEccCC----HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 276 PTAMVVASKD----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 276 ~~~i~i~~~d----~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
++.+++++.+ .+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+++++.+|+|...+++.++++||.
T Consensus 158 pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~ 237 (342)
T TIGR03376 158 FSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI 237 (342)
T ss_pred CceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999888 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcc--ccccccCCCceeeecccCCCccchHHHHhhC-CCChHHHHhh--cccceehhhhHHHHHHHHHHcCC
Q 012596 352 WLATKMGAKPA--TITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSS--MNQVAEGVSTAGAVIALAQKYNV 426 (460)
Q Consensus 352 ~la~a~Gi~~~--~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~-g~~~e~~~~~--~~~~~eg~kd~g~vv~lA~~~gv 426 (460)
++++++|.+++ +|++++|+||+++||++ +||+++|..+++ |++.+++.+. +++++||...++.++++++++++
T Consensus 238 ~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i 315 (342)
T TIGR03376 238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK 315 (342)
T ss_pred HHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence 99999999887 99999999999999999 999999999999 9999999888 78999999999999999999999
Q ss_pred C--ChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 427 K--MPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 427 ~--~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
+ +|+.+++|+++.++.+|+++++.|
T Consensus 316 ~~~~Pi~~~vy~il~~~~~~~~~~~~~ 342 (342)
T TIGR03376 316 DDEFPLFEAVYQILYEGLPPKKLPECL 342 (342)
T ss_pred CcCCCHHHHHHHHHhCCCCHHHHHhhC
Confidence 9 999999999999999999998753
No 5
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-45 Score=371.67 Aligned_cols=322 Identities=36% Similarity=0.587 Sum_probs=294.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVila 206 (460)
|||+|||+|+||+++|..|+++| ++|++|+|++++++.+++.+.+..++++..++.++.++++..+++ .++|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g--~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK--ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 68999999999999999999999 999999999999999998776777777777777888888888766 589999999
Q ss_pred cchhcHHHHHHHhhh-cCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012596 207 MPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~-~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
||+++++++++++.+ ++++++.+|+++||++.++.....+.+.+.++. .++.++.||+++.++..+.++.+.+++.+
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 999999999999998 888888899999999887666677888887765 35678899999988877777777788888
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC--Cccc
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA--KPAT 363 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi--~~~~ 363 (460)
.+..+++.++|+..+++++.++|+.+.+|+|++||++++++|+..++.++.|...+++.+++.|+..+++++|+ ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 88889999999999999999999999999999999999999999999999899999999999999999999998 7899
Q ss_pred cccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCC
Q 012596 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELT 443 (460)
Q Consensus 364 ~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~ 443 (460)
+++++++||++.+|++..+||+++|.++++|.+.+|+.+.+++++|+...++.++++++++|+++|+++++|+++.++.+
T Consensus 237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~~~~~ 316 (326)
T PRK14620 237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLYENIS 316 (326)
T ss_pred hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence 99999999999999987899999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 012596 444 PKKAVLELMS 453 (460)
Q Consensus 444 ~~~~~~~l~~ 453 (460)
|+++++.|+.
T Consensus 317 ~~~~~~~~~~ 326 (326)
T PRK14620 317 LEKTISVILS 326 (326)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 6
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-44 Score=361.14 Aligned_cols=326 Identities=35% Similarity=0.523 Sum_probs=286.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+.+|||+|||+|+||++||..|+++| ++|++|+|++++.+.+++.+.+..++++..++.++..+++++++++++|+|
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G--~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~V 78 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFA 78 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEE
Confidence 345789999999999999999999999 999999999999998887766555666666666677788888888999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch--hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~--~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+|+|+++++++++. ++++.++|++++|+.+.+ .+.+++.+.+... ..+.++.||+++.++..+.++..++
T Consensus 79 i~~v~~~~~~~v~~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~ 151 (328)
T PRK14618 79 VVAVPSKALRETLAG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVV 151 (328)
T ss_pred EEECchHHHHHHHHh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEE
Confidence 999999988777755 456789999999998764 4466666654221 2356899999999988887777778
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
++++.+.+++++++|+..+++++.++|+.|++|++++||++++++|++.++++++|...+++.++++|+..+++++|+++
T Consensus 152 ~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~ 231 (328)
T PRK14618 152 ASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEE 231 (328)
T ss_pred EeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcC
Q 012596 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNE 441 (460)
Q Consensus 362 ~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~ 441 (460)
++++++++.||++.+|.+..+||+.+|.++.+|...+++. ..+++.|+.||+++++++++++|+++|+.+.+|+++.++
T Consensus 232 ~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~-~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~~~~ 310 (328)
T PRK14618 232 ATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLE-AGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVARGG 310 (328)
T ss_pred cchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHH-HcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 9999999999999999999999998898998886665443 236789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCccC
Q 012596 442 LTPKKAVLELMSLPQVEE 459 (460)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~ 459 (460)
.+|+++++.|+++|.+.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~ 328 (328)
T PRK14618 311 WDPLAGLRSLMGREAKEE 328 (328)
T ss_pred CCHHHHHHHHhcCCCCCC
Confidence 999999999999998875
No 7
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.5e-43 Score=352.37 Aligned_cols=325 Identities=44% Similarity=0.671 Sum_probs=291.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||+|||+|+||++||..|+++| ++|++|+|++++++.+++.+....+.++..++.++.++++++++++++|+||+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG--HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 479999999999999999999999 999999999999999988766555555555665677778888888899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
||+.+++++++++.+.+++++++|+++||+.+++.+.+++.+.+.++.. ....++.||+++.+...+.+..+.+++.+.
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 9999999999999998888999999999999987778888888876531 246789999999887777777677888889
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
+.++++.++|+..++++..++|+.+.+|+|+++|++++++|.+.++++++|.+.++...+++|+..+|+++|+|++++.+
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHH
Q 012596 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK 446 (460)
Q Consensus 367 ~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~ 446 (460)
+.+.+|++.++.++.++++.+|+++..|++.+++.+.+++..|+.||+++++++|+++|+++|+++++|+++.++.+|++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~~~~~~~~~ 317 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEMPITEAVYAVLYEGKDPRE 317 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCCCCHHH
Confidence 88888888788888899999999999888776676666789999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 012596 447 AVLELMSL 454 (460)
Q Consensus 447 ~~~~l~~~ 454 (460)
.++.|++|
T Consensus 318 ~~~~~~~~ 325 (325)
T PRK00094 318 AVEDLMGR 325 (325)
T ss_pred HHHHHhcC
Confidence 99999875
No 8
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-42 Score=347.50 Aligned_cols=303 Identities=37% Similarity=0.574 Sum_probs=278.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.|||+|||+|+||++||..|+++| ++|++|+|++. ++++++++++|+||++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G--~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG--HRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 479999999999999999999999 99999999852 2567778899999999
Q ss_pred cchhcHHHHHHHhhhc-CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012596 207 MPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~-l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d 285 (460)
+|+.+++++++++.++ +++++++|++++|+++++...+++.+...++. .++.++.||.++.++..+.++..++++++
T Consensus 55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~ 132 (308)
T PRK14619 55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRD 132 (308)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCC
Confidence 9999999999998764 67889999999999998877888888777653 35667899999999887777777888999
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~ 365 (460)
.+.+++++++|+..+++++.++|+.|.+|++++||++++++|++.++++++|...+++.++++|+..+++++|+++++++
T Consensus 133 ~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~ 212 (308)
T PRK14619 133 LAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFY 212 (308)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHH
Q 012596 366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPK 445 (460)
Q Consensus 366 ~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~ 445 (460)
++++.||+..+|.+..+|||++|+++..|++.+++.+.++.++||.+|++.++++++++|+++|+.+.+|+++.++.+|+
T Consensus 213 ~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~~~~~~~ 292 (308)
T PRK14619 213 GLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQGEITPQ 292 (308)
T ss_pred cccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCCCHH
Confidence 99999999999988889999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccCC
Q 012596 446 KAVLELMSLPQVEEV 460 (460)
Q Consensus 446 ~~~~~l~~~~~~~~~ 460 (460)
++++.|++|+.+.|+
T Consensus 293 ~~~~~l~~~~~~~~~ 307 (308)
T PRK14619 293 QALEELMERDLKPEF 307 (308)
T ss_pred HHHHHHHcCCCcccc
Confidence 999999999988774
No 9
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=5.6e-40 Score=318.52 Aligned_cols=326 Identities=36% Similarity=0.535 Sum_probs=290.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-------HHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-------VCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G-----~~~~V~v~~r~~~-------~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
...||+|||+|+||+++|+.+.++- +..+|.+|.+..+ ..+-++..+.|.+|+|++++|.++.+.+|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3579999999999999999998753 2357999986542 345678889999999999999999999999
Q ss_pred HhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc----hhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN----TLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~----~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
.+++.++|+++..+|.+.+..++++|..+++++...||+.+|++.. ..+.+++.+.+.+|. ++.++.||+.+.
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI---~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI---PCSVLMGANIAS 176 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC---CceeecCCchHH
Confidence 9999999999999999999999999999999999999999999853 246889999999985 678999999999
Q ss_pred HHhccCCeEEEEccCCHHHHH-HHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012596 270 ELMNKLPTAMVVASKDRKLAN-AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (460)
Q Consensus 270 e~~~g~~~~i~i~~~d~~~~~-~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~ 348 (460)
|++++..+...+++.++.... .+.++|+...|++...+|..+++++++|||++|+++|+.+|+.+++|...++++.++.
T Consensus 177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~ 256 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL 256 (372)
T ss_pred HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence 999888877788887654444 5999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CC-CccccccccCCCceeeecccCCCccchHHHHhhCC-CChHHHHhhc--ccceehhhhHHHHHHHHHH
Q 012596 349 EIRWLATKM-GA-KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 349 E~~~la~a~-Gi-~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~ 423 (460)
|+..|++.+ +- .+.++.+.+|.+|+++||+. .||++.+..+.++ +++++.++.+ +|.++|..+++.++++.++
T Consensus 257 Em~~F~~~f~p~~~~~t~~escGvaDlitTC~g--GRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~ 334 (372)
T KOG2711|consen 257 EMIKFATHFYPGSKPTTFFESCGVADLITTCYG--GRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQK 334 (372)
T ss_pred HHHHHHHHhCCCCCcceeeccccHHHHHHHHhc--CccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHH
Confidence 999999885 44 68899999999999999998 6888888877654 7776555544 7899999999999999999
Q ss_pred cCC--CChHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012596 424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456 (460)
Q Consensus 424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~ 456 (460)
.|+ .+|+..++|+++.++..+.+.++.|.++|-
T Consensus 335 ~~l~~kfPlftaVykI~~~~~~~~~lle~l~~~~~ 369 (372)
T KOG2711|consen 335 KGLVEKFPLFTAVYKICYERLPPQALLECLRNHPE 369 (372)
T ss_pred cChhhhCcHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 999 899999999999999999999999998874
No 10
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=1e-29 Score=248.16 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=207.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+||+|||+|.||.+||.+|.++| |+|++|||++++ ++.+.+.|. ..+.++.|+++.+|+||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG--~~v~v~~r~~~ka~~~~~~~Ga--------------~~a~s~~eaa~~aDvVitm 64 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG--HEVTVYNRTPEKAAELLAAAGA--------------TVAASPAEAAAEADVVITM 64 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC--CEEEEEeCChhhhhHHHHHcCC--------------cccCCHHHHHHhCCEEEEe
Confidence 58999999999999999999999 999999999998 566666553 3556788899999999999
Q ss_pred cch-hcHHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPV-QFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~-~~~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|++ .++++|+. .+.+.+++++++|++++ +.+++.+.+++.+++. | ..++..|..+........+..++.
T Consensus 65 v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~~-G-----~~~lDAPVsGg~~~A~~GtLtimv 137 (286)
T COG2084 65 LPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAAK-G-----LEFLDAPVSGGVPGAAAGTLTIMV 137 (286)
T ss_pred cCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHhc-C-----CcEEecCccCCchhhhhCceEEEe
Confidence 996 46899884 68888999999999997 8888777777777664 4 346777777665554455667888
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
|++.+.+++++++|+..|-++++.++. |.+..+|+.||.+......++.|++.++++.|+|++
T Consensus 138 GG~~~~f~r~~pvl~~~g~~i~~~G~~-----------------G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~ 200 (286)
T COG2084 138 GGDAEAFERAKPVLEAMGKNIVHVGPV-----------------GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPD 200 (286)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEECCC-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 899999999999999999999888774 445556777888888999999999999999999999
Q ss_pred cccccc--CCCcee-eecc--cCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 363 TITGLS--GTGDIM-LTCF--VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 363 ~~~~~~--~~gd~~-~t~~--s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
.+.++. +.++.. ...+ ....++|++++ .+. ...||++++.+.|++.|+++|+.+++.++
T Consensus 201 ~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F------~v~----------~~~KDl~la~~~A~~~g~~lP~~~~~~~l 264 (286)
T COG2084 201 VVLEVISGGAAGSWILENYGPRMLEGDFSPGF------AVD----------LMLKDLGLALDAAKELGAPLPLTALAAEL 264 (286)
T ss_pred HHHHHHhccccCChHHHhhcchhhcCCCCcch------hHH----------HHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 988752 212211 1111 11223333332 222 24599999999999999999999998888
Q ss_pred Hh-------cCCCHHHHHHHH
Q 012596 438 ID-------NELTPKKAVLEL 451 (460)
Q Consensus 438 l~-------~~~~~~~~~~~l 451 (460)
+. +++|.+..++.+
T Consensus 265 y~~~~~~G~g~~D~sal~~~l 285 (286)
T COG2084 265 YAKAAAAGGGEEDFSALIKLL 285 (286)
T ss_pred HHHHHhcCCCccChHHHHHHh
Confidence 85 444555555543
No 11
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.96 E-value=1.1e-27 Score=240.52 Aligned_cols=285 Identities=14% Similarity=0.157 Sum_probs=199.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc-CCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~-~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..|||+|||+|+||+.+|..|+++| ++|++|.|++ .+.+++.|..... .++.... .+.+.+++++ ...+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD--YEAVRENGLQVDSVHGDFHLP-PVQAYRSAED-MPPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC--HHHHHhCCeEEEeCCCCeeec-CceEEcchhh-cCCCCEEE
Confidence 4589999999999999999999999 9999999986 3566666653221 1111111 1344445443 57899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-CE-----EEEECcccHHHHhccCCeE
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PF-----IALSGPSFALELMNKLPTA 278 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-~~-----~v~~gP~~a~e~~~g~~~~ 278 (460)
+|||+.++.++++.+.+.+.+++.|++++||++.. +.+.+.++...+ .. +...+|+.......| .
T Consensus 78 lavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g---~ 148 (313)
T PRK06249 78 VGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYG---R 148 (313)
T ss_pred EEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCC---c
Confidence 99999999999999999998899999999999875 345555543211 11 123344433322222 2
Q ss_pred EEEcc---CC-----HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHH
Q 012596 279 MVVAS---KD-----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQG 346 (460)
Q Consensus 279 i~i~~---~d-----~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k----l~~n~~~al~~~~ 346 (460)
+.++. .+ .+..+.+.++|+..|+.+..++|+....|.|++.|+..++.+...+.. +.+.....++..+
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~ 228 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRAL 228 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHH
Confidence 33432 22 466788999999999999999999999999999997655444443333 2334467899999
Q ss_pred HHHHHHHHHHcCCCccc-cccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcC
Q 012596 347 CSEIRWLATKMGAKPAT-ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYN 425 (460)
Q Consensus 347 ~~E~~~la~a~Gi~~~~-~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~g 425 (460)
+.|+.+++++.|++... +.+. .+..+........+|-+|+.+|+++| ....+|.++++|+++|
T Consensus 229 ~~E~~~va~a~Gi~~~~~~~~~-----~~~~~~~~~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~G 292 (313)
T PRK06249 229 MAEVIQGAAACGHTLPEGYADH-----MLAVTERMPDYRPSMYHDFEEGRPLE-----------LEAIYANPLAAARAAG 292 (313)
T ss_pred HHHHHHHHHhcCCCCChhHHHH-----HHHHhhcCCCCCChHHHHHHCCCccc-----------HHHHhhHHHHHHHHhC
Confidence 99999999999998432 1110 00011111111235668888887765 3367899999999999
Q ss_pred CCChHHHHHHHHHhcC
Q 012596 426 VKMPVLTAVARIIDNE 441 (460)
Q Consensus 426 v~~P~~~~v~~ll~~~ 441 (460)
+++|+++.+|.+++..
T Consensus 293 i~~P~~~~l~~~l~~~ 308 (313)
T PRK06249 293 CAMPRVEMLYQALEFL 308 (313)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999999998754
No 12
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.96 E-value=2.9e-27 Score=235.76 Aligned_cols=283 Identities=18% Similarity=0.221 Sum_probs=203.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|+||+.+|..|+++| ++|++++|++++++.+++.|.... .+ .....+..++++.++ +++|+||+++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~~~--~~-~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLRLE--DG-EITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCccc--CC-ceeecccCCCChhHc-CCCCEEEEec
Confidence 68999999999999999999999 999999998888888887765431 11 111112334566654 8999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC------CEEEEECcccHHHHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~------~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+.++.++++.+.+.+.+++.||+++||++.. +.+.+.++.... ..+...+|+...+...+ .+.+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g---~~~i 145 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGG---RLKI 145 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCC---CEEE
Confidence 99999999999999998889999999999764 234444432111 11234566655543332 2345
Q ss_pred ccCC--HHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHHHHHHHHH
Q 012596 282 ASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQGCSEIRWLAT 355 (460)
Q Consensus 282 ~~~d--~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k----l~~n~~~al~~~~~~E~~~la~ 355 (460)
+..+ .+..+.+.++|+..++.+..++|+...+|.|+++|+.....+...+.. +.++....++..++.|+.++++
T Consensus 146 g~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 225 (304)
T PRK06522 146 GEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAE 225 (304)
T ss_pred eCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 5432 244788999999999999999999999999999998665554444443 3346678999999999999999
Q ss_pred HcCCCccc--cccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHH
Q 012596 356 KMGAKPAT--ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLT 432 (460)
Q Consensus 356 a~Gi~~~~--~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~ 432 (460)
++|+++.. +.+. +.........+ .+|-+|+.+|+++| .....|+++++|+++|+++|+++
T Consensus 226 a~G~~~~~~~~~~~------~~~~~~~~~~~~sSm~~D~~~gr~tE-----------id~i~G~~v~~a~~~gv~~P~~~ 288 (304)
T PRK06522 226 AEGVHLSVEEVREY------VRQVIQKTAANTSSMLQDLEAGRPTE-----------IDAIVGYVLRRGRKHGIPTPLND 288 (304)
T ss_pred HcCCCCChHHHHHH------HHHHhhccCCCCchHHHHHHcCCCcc-----------cchhccHHHHHHHHcCCCCcHHH
Confidence 99988532 1111 00001011122 24667888887765 23567999999999999999999
Q ss_pred HHHHHHhcCC
Q 012596 433 AVARIIDNEL 442 (460)
Q Consensus 433 ~v~~ll~~~~ 442 (460)
++|++++..+
T Consensus 289 ~l~~~~~~~~ 298 (304)
T PRK06522 289 ALYGLLKAKE 298 (304)
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 13
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=1.6e-26 Score=230.77 Aligned_cols=283 Identities=16% Similarity=0.146 Sum_probs=200.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~-~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||+|+||+.+|..|+++| ++|++|+| +++.+.+++.|....... +...+ ....++.+++.+++|+||+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVP--GPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEeCCCeEEec--ceeecCHHHccCCCCEEEEE
Confidence 68999999999999999999999 99999999 778888887765433211 11111 22345666666899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEE------EEECcccHHHHhccCCeEEE
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI------ALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~------v~~gP~~a~e~~~g~~~~i~ 280 (460)
+|+.+++++++.+.+.+.++++||+++||++.. +.+.+.++...+..+ ...+|+..... ....+.
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~---~~~~~~ 146 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQR---ADHRLT 146 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEc---CCCcEE
Confidence 999999999999999888889999999999764 234444443211111 11233322211 122344
Q ss_pred EccC---CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHHHHHHH
Q 012596 281 VASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 281 i~~~---d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k----l~~n~~~al~~~~~~E~~~l 353 (460)
++.. ..+..+.+.++|...++.+...+|+...+|.|++.|+...+.+...+.. +.++....++..++.|+.++
T Consensus 147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v 226 (305)
T PRK12921 147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV 226 (305)
T ss_pred EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 5432 2466778999999999999999999999999999997655544444333 33455678999999999999
Q ss_pred HHHcCCCcccc-c-cccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChH
Q 012596 354 ATKMGAKPATI-T-GLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPV 430 (460)
Q Consensus 354 a~a~Gi~~~~~-~-~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~ 430 (460)
+++.|+++..- . ... ..+ +..+ ..+ .+|-+|+.+|+++| .....|+++++|+++|+++|+
T Consensus 227 ~~a~G~~~~~~~~~~~~---~~~--~~~~-~~~~sSm~~D~~~gr~tE-----------id~i~G~vv~~a~~~gv~~P~ 289 (305)
T PRK12921 227 ARAEGAPLRDDVVEEIV---KIF--AGAP-GDMKTSMLRDMEKGRPLE-----------IDHLQGVLLRRARAHGIPTPI 289 (305)
T ss_pred HHHcCCCCChhHHHHHH---HHH--hccC-CCCCcHHHHHHHcCCccc-----------HHHHHHHHHHHHHHhCCCCcH
Confidence 99999985421 1 100 000 0111 122 24667888777664 335789999999999999999
Q ss_pred HHHHHHHHhcC
Q 012596 431 LTAVARIIDNE 441 (460)
Q Consensus 431 ~~~v~~ll~~~ 441 (460)
++++|++++..
T Consensus 290 ~~~l~~~~~~~ 300 (305)
T PRK12921 290 LDTVYALLKAY 300 (305)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 14
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.95 E-value=7e-27 Score=233.22 Aligned_cols=288 Identities=18% Similarity=0.204 Sum_probs=206.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|+|+|+||+.+|..|+++| ++|+++.|++. ++++++.|+......+.... ....+.+. +....+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~-~~~~~~~~-~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGGNFTT-PVVAATDA-EALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCCcccc-ccccccCh-hhcCCCCEEEEEe
Confidence 79999999999999999999999 89999999986 99999988755433331111 11222333 4467999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC------CCCEEEEECcccHHHHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~------~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+.+++++++.+.+.+++++.|+.+|||++.. +.+.+.++.. ....++..||+.....+.|......+
T Consensus 76 Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~ 149 (307)
T COG1893 76 KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGEL 149 (307)
T ss_pred ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccC
Confidence 99999999999999999999999999999986 2344443322 11223445555544332222221122
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHc
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKM 357 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~----~n~~~al~~~~~~E~~~la~a~ 357 (460)
.+++++..+.+.++|+..++++.+.+|+....|.|++.|......+.....+++ +.....++.+.+.|+..++.+.
T Consensus 150 ~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~ 229 (307)
T COG1893 150 RGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE 229 (307)
T ss_pred CCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence 344457899999999999999999999999999999999866654444444333 4456789999999999999999
Q ss_pred CCCccc-cccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHH
Q 012596 358 GAKPAT-ITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVA 435 (460)
Q Consensus 358 Gi~~~~-~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~ 435 (460)
|+..+. ..+- ....+......++ +|-+|+.+|+++| ..+..|+++++|+++|+++|+++++|
T Consensus 230 g~~~~~~~~~~-----v~~~~~~~~~~~~sSM~qDl~~gr~tE-----------id~i~G~vv~~a~~~gi~~P~~~~L~ 293 (307)
T COG1893 230 GVELPEEVVER-----VLAVIRATDAENYSSMLQDLEKGRPTE-----------IDAINGAVVRLAKKHGLATPVNDTLY 293 (307)
T ss_pred cCCCCHHHHHH-----HHHHHHhcccccCchHHHHHHcCCccc-----------HHHHhhHHHHHHHHhCCCCcHHHHHH
Confidence 965321 1110 0000111112333 4668888877664 34678999999999999999999999
Q ss_pred HHHhcCC
Q 012596 436 RIIDNEL 442 (460)
Q Consensus 436 ~ll~~~~ 442 (460)
++++..+
T Consensus 294 ~lvk~~e 300 (307)
T COG1893 294 ALLKAKE 300 (307)
T ss_pred HHHHHHH
Confidence 9997543
No 15
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=3.9e-26 Score=231.72 Aligned_cols=287 Identities=18% Similarity=0.272 Sum_probs=199.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~---l~~~i~a~~~~~ea~~~aDiV 203 (460)
||||+|||+|.||+++|..|+++| ++|++|+|++ +.+.+++.|.......+.. .+.++..+++. +++.++|+|
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G--~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG--ADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC--CcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 589999999999999999999999 9999999975 4577777665433222211 12334556666 457899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CC----E-EEEECcccHHHHhccCCe
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QP----F-IALSGPSFALELMNKLPT 277 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~----~-~v~~gP~~a~e~~~g~~~ 277 (460)
|+|||..+..++++.+.+.+.++++|++++||+... +.+.+.++... .. . ++..||+.+.....|.
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~-- 149 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA-- 149 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc--
Confidence 999999999999999999998999999999998764 23444443211 11 1 1355666554322222
Q ss_pred EEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcc----cCCCcHHHHHHHHHHHHHHHH
Q 012596 278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGM----NLGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 278 ~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~----kl~~n~~~al~~~~~~E~~~l 353 (460)
+.++. .+.++++.++|+..++++.+.+|+.+.+|.|+++|+. .+.....+. -+.+.....++..++.|+..+
T Consensus 150 -l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v 225 (341)
T PRK08229 150 -LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRV 225 (341)
T ss_pred -eEecC--CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence 23432 2457899999999999999999999999999999973 222222222 233455678899999999999
Q ss_pred HHHcCCCcccccccc--C------CCceeee-----cc-cCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHH
Q 012596 354 ATKMGAKPATITGLS--G------TGDIMLT-----CF-VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIA 419 (460)
Q Consensus 354 a~a~Gi~~~~~~~~~--~------~gd~~~t-----~~-s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~ 419 (460)
+++.|++++.+..+. + +.+.+.. .. .......+|-+|+..|+++| .....|++++
T Consensus 226 a~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sm~~D~~~~r~tE-----------i~~i~G~i~~ 294 (341)
T PRK08229 226 LKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLARSSMSDDLAAGRATE-----------IDWINGEIVR 294 (341)
T ss_pred HHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCccCchHHHHHHcCCcch-----------HHHHhhHHHH
Confidence 999999987654321 0 0000000 00 00011124567777776664 3357799999
Q ss_pred HHHHcCCCChHHHHHHHHHhc
Q 012596 420 LAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 420 lA~~~gv~~P~~~~v~~ll~~ 440 (460)
+|+++|+++|+++++|++++.
T Consensus 295 ~a~~~gv~~P~~~~~~~~~~~ 315 (341)
T PRK08229 295 LAGRLGAPAPVNARLCALVHE 315 (341)
T ss_pred HHHHcCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 16
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.95 E-value=2e-26 Score=221.34 Aligned_cols=272 Identities=17% Similarity=0.180 Sum_probs=207.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|||||+|+||..|+.+|.++| |.|++|||+.++++.+.+.|. ++.++|.|+.+.+|+||.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G--~kVtV~dr~~~k~~~f~~~Ga--------------~v~~sPaeVae~sDvvitm 98 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAG--YKVTVYDRTKDKCKEFQEAGA--------------RVANSPAEVAEDSDVVITM 98 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcC--CEEEEEeCcHHHHHHHHHhch--------------hhhCCHHHHHhhcCEEEEE
Confidence 579999999999999999999999 999999999999999999874 4567899999999999999
Q ss_pred cchh-cHHHHHHH---hhhcCCCCCeE-EEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 207 MPVQ-FSSSFLEG---ISDYVDPGLPF-ISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 207 Vp~~-~~~~vl~~---i~~~l~~~~iI-V~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
||+. ++++++.+ +...++++... |++++ ++|++...+.+.+... .+.++.+|.++........+.+++
T Consensus 99 v~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmST-idp~~s~ei~~~i~~~------~~~~vDAPVSGg~~~A~~G~Ltim 171 (327)
T KOG0409|consen 99 VPNPKDVKDVLLGKSGVLSGIRPGKKATVDMST-IDPDTSLEIAKAISNK------GGRFVDAPVSGGVKGAEEGTLTIM 171 (327)
T ss_pred cCChHhhHHHhcCCCcceeeccCCCceEEeccc-cCHHHHHHHHHHHHhC------CCeEEeccccCCchhhhcCeEEEE
Confidence 9964 57887754 45555676665 88886 8988766666666543 345788888877655555566788
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
+++|++.+++..++|+.+|-.+.+.+.. |.+...|+++|.+.+....+++|++.+|.++|+|+
T Consensus 172 agGde~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~ 234 (327)
T KOG0409|consen 172 AGGDEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDA 234 (327)
T ss_pred ecCcHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 8899999999999999999887765542 45566778888888889999999999999999999
Q ss_pred cccccccCCCcee-----eecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHH
Q 012596 362 ATITGLSGTGDIM-----LTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436 (460)
Q Consensus 362 ~~~~~~~~~gd~~-----~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ 436 (460)
.++.++...|... ..+.....++| ..|+.++. ..||++++.+.|...++++|+.....+
T Consensus 235 ~~l~eiln~G~~~S~~~~~~~p~m~k~dy------~p~f~~~~----------m~KDLgla~~~a~~~~~~~P~~slA~q 298 (327)
T KOG0409|consen 235 KKLLEILNTGRCWSSMFYNPVPGMLKGDY------NPGFALKL----------MVKDLGLALNAAESVKVPMPLGSLAHQ 298 (327)
T ss_pred HHHHHHHhcCCcccHHHhCcCchhhcCCC------CCcchHHH----------HHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 9888753322211 11111112222 22333332 359999999999999999999988877
Q ss_pred HHh-------cCCCHHHHHHHHhcC
Q 012596 437 IID-------NELTPKKAVLELMSL 454 (460)
Q Consensus 437 ll~-------~~~~~~~~~~~l~~~ 454 (460)
+++ .+++...+++.+...
T Consensus 299 ly~~~~a~G~g~~Dfs~V~~~~~~~ 323 (327)
T KOG0409|consen 299 LYKSMKALGYGDKDFSAVYRAFRRL 323 (327)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHh
Confidence 774 556666666665543
No 17
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=2.2e-26 Score=230.19 Aligned_cols=282 Identities=15% Similarity=0.098 Sum_probs=195.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCC-CCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQ-KLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~-~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.|||+|+|+|+||+.+|..|+++| ++|++++|+.+++++++++ |.......+. ..+ +.. .+. +....+|+||
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~--~~~-~~~-~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA--IPA-ETA-DAAEPIHRLL 75 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEeeCCcceeec--cCC-CCc-ccccccCEEE
Confidence 379999999999999999999999 8999999998899999865 4422111111 111 111 122 2246799999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEE-----EECcccHHHHhccCCeE
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIA-----LSGPSFALELMNKLPTA 278 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v-----~~gP~~a~e~~~g~~~~ 278 (460)
+|||++++.++++.+.+++.+++.||++|||++.. +.+.+.++... ....+ ..+|+...+.. ...
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~---~g~ 146 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAG---HGF 146 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEec---eEE
Confidence 99999999999999999999999999999999976 34555555321 11111 12343332211 122
Q ss_pred EEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHHHHHHc
Q 012596 279 MVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM-AALVAQGCSEIRWLATKM 357 (460)
Q Consensus 279 i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~-~al~~~~~~E~~~la~a~ 357 (460)
+.++..+.+..+++.++|...|+.+.+++|+.+..|.|++.|+..+..+.......+.-.. ..++..++.|+.+++++.
T Consensus 147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~ 226 (305)
T PRK05708 147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC 226 (305)
T ss_pred EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence 3466544566788999999999999999999999999999998655555554444442111 156789999999999999
Q ss_pred CCCccc--cccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHH
Q 012596 358 GAKPAT--ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV 434 (460)
Q Consensus 358 Gi~~~~--~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v 434 (460)
|+.... +.+.. ...+... ..+ .+|-+|+.+|+++| ....+|+++++|+++|+++|+++++
T Consensus 227 G~~~~~~~~~~~~-----~~~~~~~-~~~~sSM~qD~~~gR~tE-----------id~i~G~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 227 GQPAAAANLHEEV-----QRVIQAT-AANYSSMYQDVRAGRRTE-----------ISYLLGYACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CCCccHHHHHHHH-----HHHHHhc-cCCCcHHHHHHHcCCcee-----------ehhhhhHHHHHHHHcCCCCchHHHH
Confidence 987431 21110 0001111 122 25678888887764 3357899999999999999999999
Q ss_pred HHHHhc
Q 012596 435 ARIIDN 440 (460)
Q Consensus 435 ~~ll~~ 440 (460)
|++++.
T Consensus 290 ~~~v~~ 295 (305)
T PRK05708 290 QQRLVA 295 (305)
T ss_pred HHHHHH
Confidence 998764
No 18
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.94 E-value=4.6e-25 Score=219.84 Aligned_cols=270 Identities=14% Similarity=0.177 Sum_probs=192.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
+||+|||+|.||.+||..|+++| ++|++|||++++++.+.+.|. ..+.++.++++++|+||+|+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G--~~V~v~d~~~~~~~~~~~~g~--------------~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG--HQLQVFDVNPQAVDALVDKGA--------------TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEEec
Confidence 58999999999999999999999 999999999999988877542 23457788889999999999
Q ss_pred chh-cHHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 208 PVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 208 p~~-~~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|+. .+++++. .+.+.+++++++|++++ +.+.+.+.+.+.+.+. | +.++.+|...........+..++.+
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~lvid~sT-~~p~~~~~l~~~l~~~-g-----~~~ldapV~g~~~~a~~g~l~~~~g 138 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDALVIDMST-IHPLQTDKLIADMQAK-G-----FSMMDVPVGRTSDNAITGTLLLLAG 138 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEccCCCCHHHHHhCcEEEEEC
Confidence 986 4788874 45667788999999997 5555555555555543 3 2355666654432221223446677
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
++.+.+++++++|+..+-++++.++. |.+..+|+.+|.+......++.|+..++++.|+|++.
T Consensus 139 g~~~~~~~~~p~l~~~g~~~~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~ 201 (296)
T PRK15461 139 GTAEQVERATPILMAMGNELINAGGP-----------------GMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDV 201 (296)
T ss_pred CCHHHHHHHHHHHHHHcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999988888877764 3334456667777777788899999999999999988
Q ss_pred ccccc--CCC-ceeee-ccc--CCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 364 ITGLS--GTG-DIMLT-CFV--NLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 364 ~~~~~--~~g-d~~~t-~~s--~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
+.++. +.+ ..... ... ...++| ..+++++ ...||+++++++|+++|+++|+.+.+.++
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~f~~~----------~~~KD~~l~~~~a~~~g~~~p~~~~~~~~ 265 (296)
T PRK15461 202 ALKVMSGTAAGKGHFTTTWPNKVLKGDL------SPAFMID----------LAHKDLGIALDVANQLHVPMPLGAASREV 265 (296)
T ss_pred HHHHHhcCcccChHHHccccchhccCCC------CCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHH
Confidence 77642 111 10000 000 001111 1122222 24599999999999999999999999888
Q ss_pred Hh-------cCCCHHHHHHHHhc
Q 012596 438 ID-------NELTPKKAVLELMS 453 (460)
Q Consensus 438 l~-------~~~~~~~~~~~l~~ 453 (460)
+. ++.+....++.+..
T Consensus 266 ~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 266 YSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHhcCCCCCChHHHHHHHHH
Confidence 84 45666676665544
No 19
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.93 E-value=1.8e-24 Score=215.04 Aligned_cols=274 Identities=16% Similarity=0.191 Sum_probs=191.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|+||.+||.+|.++| ++|++|+|++. .+.+.+.|. ....++.++++.+|+||+||
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G--~~v~v~~~~~~-~~~~~~~g~--------------~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG--HQLHVTTIGPV-ADELLSLGA--------------VSVETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--CeEEEEeCCHh-HHHHHHcCC--------------eecCCHHHHHhcCCEEEEeC
Confidence 58999999999999999999999 99999999874 565654442 34457888889999999999
Q ss_pred chh-cHHHHHH---HhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 208 PVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 208 p~~-~~~~vl~---~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
|.. ++++++. ++.+.+.+++++|++++ +.+++.+.+.+.+.+. |. .++.+|...........+..++.+
T Consensus 64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~~~~~~~~~~~~~-G~-----~~vdaPVsGg~~~a~~g~l~~~~g 136 (292)
T PRK15059 64 PDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPIETKRFARQVNEL-GG-----DYLDAPVSGGEIGAREGTLSIMVG 136 (292)
T ss_pred CChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----CEEEecCCCCHHHHhcCcEEEEEc
Confidence 975 6788773 35666778999999986 7777666666766654 43 245556554443322223345567
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
++.+.+++++++|+..+-++++.++. |.+..+|+.+|.+......++.|++.++++.|+|+++
T Consensus 137 G~~~~~~~~~p~l~~~g~~~~~~G~~-----------------G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~ 199 (292)
T PRK15059 137 GDEAVFERVKPLFELLGKNITLVGGN-----------------GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVR 199 (292)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999988777776663 2334455666777777788999999999999999988
Q ss_pred ccccc--CCCc-eeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh-
Q 012596 364 ITGLS--GTGD-IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID- 439 (460)
Q Consensus 364 ~~~~~--~~gd-~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~- 439 (460)
+.++. +.+. .+.....+ +-...+...+++++ ...||+++++++|++.|+++|+.+.+.++++
T Consensus 200 ~~~~l~~~~~~s~~~~~~~~----~~~~~~~~~~f~l~----------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 265 (292)
T PRK15059 200 VRQALMGGFASSRILEVHGE----RMIKRTFNPGFKIA----------LHQKDLNLALQSAKALALNLPNTATCQELFNT 265 (292)
T ss_pred HHHHHHcCcccCHHHHhhch----hhhcCCCCCCCchH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 87642 1111 01000000 00001111223332 2459999999999999999999999888884
Q ss_pred ------cCCCHHHHHHHHhcCCC
Q 012596 440 ------NELTPKKAVLELMSLPQ 456 (460)
Q Consensus 440 ------~~~~~~~~~~~l~~~~~ 456 (460)
++.+....++.+....+
T Consensus 266 a~~~g~g~~D~sa~~~~~~~~~~ 288 (292)
T PRK15059 266 CAANGGSQLDHSALVQALELMAN 288 (292)
T ss_pred HHhcCCCcCChHHHHHHHHHhcC
Confidence 45566777766655433
No 20
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.92 E-value=1.1e-24 Score=197.44 Aligned_cols=156 Identities=42% Similarity=0.605 Sum_probs=138.2
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
||+|||+|+||+++|..|+++| ++|++|.|+++.++.+++.+.+..|+++..++.++.+++|++++++++|+|+++||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 7999999999999999999999 99999999999999999999888999999999999999999999999999999999
Q ss_pred hhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHH
Q 012596 209 VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288 (460)
Q Consensus 209 ~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~ 288 (460)
++..++++++|.+++++++++|.+.+|++.++...+++.+++.++.. .+.+++||+++.|+..+.++.+++++.+.+.
T Consensus 79 s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~ 156 (157)
T PF01210_consen 79 SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEEV 156 (157)
T ss_dssp GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence 99999999999999999999999999998888889999999998864 3889999999999999999999999887664
No 21
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.92 E-value=5e-24 Score=211.59 Aligned_cols=269 Identities=16% Similarity=0.154 Sum_probs=191.0
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-h
Q 012596 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-Q 210 (460)
Q Consensus 132 IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~ 210 (460)
|||+|.||.+||.+|+++| ++|++|+|++++++.+.+.|. ..++++.++++++|+||+|||. .
T Consensus 1 ~IGlG~mG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~--------------~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG--HPVRVFDLFPDAVEEAVAAGA--------------QAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred CCcccHhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEeCCChH
Confidence 6899999999999999999 999999999999988887552 3456788889999999999997 5
Q ss_pred cHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012596 211 FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK 287 (460)
Q Consensus 211 ~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~ 287 (460)
++++++ +++.+.+++++++|+++ ++.+++.+.+.+.+.+. |. .++.+|..+........+..++.+++.+
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~-g~-----~~vdaPv~Gg~~~a~~g~l~~~~gg~~~ 137 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAH-GA-----VFMDAPVSGGVGGARAGTLTFMVGGVAE 137 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----cEEECCCCCCHHHHhhCcEEEEECCCHH
Confidence 688888 67888888899999998 68888777777777653 32 3566666654433323344456667888
Q ss_pred HHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccc
Q 012596 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367 (460)
Q Consensus 288 ~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~ 367 (460)
.+++++++|+..+-++.+.++.- .+..+|+.+|.+......++.|++.++++.|+|++.+.++
T Consensus 138 ~~~~~~~~l~~~g~~~~~~g~~g-----------------~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~ 200 (288)
T TIGR01692 138 EFAAAEPVLGPMGRNIVHCGDHG-----------------AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEI 200 (288)
T ss_pred HHHHHHHHHHHhcCCeEeeCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999998887777766632 2333555667767777789999999999999999988764
Q ss_pred cC--CCcee-eecccCCCcc---chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh--
Q 012596 368 SG--TGDIM-LTCFVNLSRN---RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-- 439 (460)
Q Consensus 368 ~~--~gd~~-~t~~s~~srn---~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~-- 439 (460)
.. .+... .....+..+- .....+...++++. ...||++++.++|++.|+++|+.+.+.+++.
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 201 ANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTA----------LMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred HhcCCccCcHHHHhCCCccccccccccCCCCCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 21 11111 0000000000 00000111122222 3459999999999999999999999988884
Q ss_pred -----cCCCHHHHHHH
Q 012596 440 -----NELTPKKAVLE 450 (460)
Q Consensus 440 -----~~~~~~~~~~~ 450 (460)
++.+....++.
T Consensus 271 ~~~g~g~~d~~~~~~~ 286 (288)
T TIGR01692 271 DDKGHGGKDFSSVIQL 286 (288)
T ss_pred HhcCCCCCChHHHHHH
Confidence 34455555543
No 22
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.92 E-value=1e-23 Score=208.97 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHH
Q 012596 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHAMPVQFSSSF 215 (460)
Q Consensus 137 ~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~v 215 (460)
+||+.+|..|+++| ++|++|+|+ ++.+.+++.|.......+ ...+ .+.+++++++ ...+|+||+|||++++.++
T Consensus 1 aiG~~~a~~L~~~G--~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~ 75 (293)
T TIGR00745 1 AVGSLYGAYLARAG--HDVTLLARG-EQLEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVIITVKAYQTEEA 75 (293)
T ss_pred CchHHHHHHHHhCC--CcEEEEecH-HHHHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEEEeccchhHHHH
Confidence 58999999999999 999999997 678889888865432211 1111 2345556666 6789999999999999999
Q ss_pred HHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC------CEEEEECcccHHHHhccCCeEEEEccCC--HH
Q 012596 216 LEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFALELMNKLPTAMVVASKD--RK 287 (460)
Q Consensus 216 l~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~------~~~v~~gP~~a~e~~~g~~~~i~i~~~d--~~ 287 (460)
++.+.+++.++++||.++||++.. +.+.+.++...+ ..+...+|+.......+ .+.++..+ .+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~~------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~---~~~iG~~~~~~~ 146 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGHE------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLG---ATKIGDYVGENE 146 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCCH------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccc---cEEEecCCCchH
Confidence 999999999999999999999875 334444443111 11233455544332222 23455432 25
Q ss_pred HHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 288 ~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~----~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
..+.+.++|+..++++..++|+....|.|++.|+.....+...+..++ +.....++..++.|+.+++++.|+++..
T Consensus 147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 226 (293)
T TIGR00745 147 AVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD 226 (293)
T ss_pred HHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 678899999999999999999999999999999754433333333322 3346789999999999999999988543
Q ss_pred cccccCCCceeeecccCCCcc-chHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcC
Q 012596 364 ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNE 441 (460)
Q Consensus 364 ~~~~~~~gd~~~t~~s~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~ 441 (460)
..-. +.+.........+ .+|-+|+.+|+++| .....|+++++|+++|+++|+++.+|++++..
T Consensus 227 ~~~~----~~~~~~~~~~~~~~sSm~~D~~~gr~tE-----------id~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 227 DEVE----ELVRAVIRMTAENTSSMLQDLLRGRRTE-----------IDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred HHHH----HHHHHHHhcCCCCCChHHHHHHcCCcch-----------HHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 2100 0010111111223 25668888777664 33678999999999999999999999998754
No 23
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.91 E-value=4.5e-23 Score=205.41 Aligned_cols=275 Identities=17% Similarity=0.203 Sum_probs=188.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+|||+|||+|.||..+|..|++.| ++|++|+|++++.+.+.+.|. ..++++++++++||+||+|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~g~--------------~~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVYDRNPEAVAEVIAAGA--------------ETASTAKAVAEQCDVIITM 65 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------eecCCHHHHHhcCCEEEEe
Confidence 479999999999999999999999 899999999988887776542 3455788888999999999
Q ss_pred cch-hcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp~-~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
+|. ..++.++ +++.+.+++++++|++++ +.+.+.+.+.+.+.+. | ..++.+|.++...........++.
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st-~~~~~~~~l~~~~~~~-g-----~~~~d~pv~g~~~~a~~g~l~i~~ 138 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMSS-IAPLASREIAAALKAK-G-----IEMLDAPVSGGEPKAIDGTLSVMV 138 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCcEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEcCCCCCHHHHhhCcEEEEE
Confidence 995 4567776 457777888999999886 5555444555555442 2 235666655433221122223444
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
+++.+.+++++++|+..+.++.+.++...... +|+.+|.+......+++|+..++++.|++++
T Consensus 139 gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~-----------------~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 201 (296)
T PRK11559 139 GGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNV-----------------TKLANQVIVALNIAAMSEALVLATKAGVNPD 201 (296)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56788999999999998877776655322222 3445566666677899999999999999998
Q ss_pred cccccc--CCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh-
Q 012596 363 TITGLS--GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID- 439 (460)
Q Consensus 363 ~~~~~~--~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~- 439 (460)
++.+.. +.+... ..... ..+.+..+...|++.+. ..||+++++++|+++|+++|+.+.+++++.
T Consensus 202 ~~~~~l~~~~~~s~--~~~~~-~~~~~~~d~~~~f~~~~----------~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK11559 202 LVYQAIRGGLAGST--VLDAK-APMVMDRNFKPGFRIDL----------HIKDLANALDTSHGVGAPLPLTAAVMEMMQA 268 (296)
T ss_pred HHHHHHhcCcccCH--HHHhh-chHhhcCCCCCCcchHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 776532 111100 00000 00001112223344432 248999999999999999999999998883
Q ss_pred ------cCCCHHHHHHHHhcC
Q 012596 440 ------NELTPKKAVLELMSL 454 (460)
Q Consensus 440 ------~~~~~~~~~~~l~~~ 454 (460)
++.+....++.+..+
T Consensus 269 ~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 269 LKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHhcCCCcCCcHHHHHHHHHh
Confidence 566777777766544
No 24
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.91 E-value=1.5e-22 Score=210.79 Aligned_cols=282 Identities=21% Similarity=0.199 Sum_probs=201.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a 200 (460)
|||+|||+|.||..+|..|+++| ++|++||+++++++.+++ |..+.+.++.. + ..++.+++++.++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~a 77 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEKVDKLNK-GKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDA 77 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHHHHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhC
Confidence 68999999999999999999999 999999999999998875 43333434322 1 12367778888888999
Q ss_pred cEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHH-HHHHHHhCCC-CCCEEEEECcccH
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS-QIIPQALRNP-RQPFIALSGPSFA 268 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~-e~l~~~lg~~-~~~~~v~~gP~~a 268 (460)
|+||+|||+. .+.++++++.+.+++++++|.++ ++.+.+.+.+. +.+++..|.. ...+.+.++|.++
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~ 156 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence 9999999965 37777888988888999998877 58888766664 4444422321 2456789999887
Q ss_pred HHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCC-ceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012596 269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (460)
Q Consensus 269 ~e~~~----g~~~~i~i~~~d~~~~~~l~~lL~~~g-~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~ 343 (460)
.+... ..+..++++ .+.+..++++++|+..+ ..++...++...+..|++.| .+.+..
T Consensus 157 ~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N-----------------~~~a~~ 218 (411)
T TIGR03026 157 REGNAVHDLLNPDRIVGG-ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN-----------------TFRAVK 218 (411)
T ss_pred CCCChhhhhcCCCEEEEe-CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH-----------------HHHHHH
Confidence 64321 223344444 78899999999999876 45666777777666666555 445566
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHH
Q 012596 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 344 ~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~ 423 (460)
..+++|+..+|+++|+|++++.+..+....+ ..+.+.+|+.++ |.. ..||+++++++|++
T Consensus 219 ia~~nE~~~la~~~GiD~~~v~~~~~~~~~i------~~~~~~pg~g~g-g~c-------------~~KD~~~l~~~a~~ 278 (411)
T TIGR03026 219 IAFANELARICEALGIDVYEVIEAAGTDPRI------GFNFLNPGPGVG-GHC-------------IPKDPLALIYKAKE 278 (411)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCCCC------CCCcCCCCCCCC-CCc-------------hhhhHHHHHHHHHh
Confidence 7889999999999999999888764432211 012222222111 111 23899999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCHHHHHHHHhc
Q 012596 424 YNVKMPVLTAVARIIDNELTPKKAVLELMS 453 (460)
Q Consensus 424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (460)
+|+++|+.+++.++ ++..+..+++.+..
T Consensus 279 ~g~~~~l~~~~~~~--N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 279 LGYNPELIEAAREI--NDSQPDYVVEKILD 306 (411)
T ss_pred cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 99999999999987 44555555555443
No 25
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.90 E-value=1.1e-22 Score=202.33 Aligned_cols=269 Identities=17% Similarity=0.205 Sum_probs=188.1
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
||+|||+|.||..||..|+++| ++|++|+|++++++.+.+.|. ..++++.+++++||+||+|+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG--YQLHVTTIGPEVADELLAAGA--------------VTAETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------cccCCHHHHHhcCCEEEEecC
Confidence 6999999999999999999999 999999999998888877553 223467788899999999999
Q ss_pred hh-cHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 209 VQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 209 ~~-~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
.. .++.++ +++.+.+++++++|++++ +.+.+.+.+.+.+.+. | ..++.+|.++.+.........++.++
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~g~iivd~st-~~~~~~~~l~~~l~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~gg 137 (291)
T TIGR01505 65 DSPQVEEVAFGENGIIEGAKPGKTLVDMSS-ISPIESKRFAKAVKEK-G-----IDYLDAPVSGGEIGAIEGTLSIMVGG 137 (291)
T ss_pred CHHHHHHHHcCcchHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CCEEecCCCCCHHHHhcCCEEEEecC
Confidence 75 566665 346667788999999886 4555444555555543 2 23556676654432222223355556
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012596 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~ 364 (460)
+.+.+++++++|+..+.++.+.++... +..+|+.+|.+......+++|+..++++.|++++++
T Consensus 138 ~~~~~~~~~~ll~~lg~~~~~~g~~g~-----------------a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~ 200 (291)
T TIGR01505 138 DQAVFDRVKPLFEALGKNIVLVGGNGD-----------------GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRV 200 (291)
T ss_pred CHHHHHHHHHHHHHhcCCeEEeCCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 789999999999998877776655322 223345566677777889999999999999999888
Q ss_pred cccc--CCCcee-ee--cccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 365 TGLS--GTGDIM-LT--CFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 365 ~~~~--~~gd~~-~t--~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
.+.. +.+... .. +....+++| ..++++. ...||++++.+++++.|+++|+.+.+.++++
T Consensus 201 ~~~l~~~~~~s~~~~~~~~~~~~~~~------~~~f~~~----------~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~ 264 (291)
T TIGR01505 201 RQALRGGLAGSTVLEVKGERVIDRTF------KPGFRID----------LHQKDLNLALDSAKAVGANLPNTATVQELFN 264 (291)
T ss_pred HHHHhcCcccCHHHHhhChhhhcCCC------CCCcchH----------HHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Confidence 7642 111100 00 000111121 1223332 2348999999999999999999999988885
Q ss_pred -------cCCCHHHHHHHHhc
Q 012596 440 -------NELTPKKAVLELMS 453 (460)
Q Consensus 440 -------~~~~~~~~~~~l~~ 453 (460)
+++|....++.+..
T Consensus 265 ~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 265 TLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred HHHhcCCCccChHHHHHHHHH
Confidence 46777777776644
No 26
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=99.90 E-value=9.4e-24 Score=188.59 Aligned_cols=145 Identities=48% Similarity=0.776 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc-ccccccCCCceeeecccCCCccc
Q 012596 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA-TITGLSGTGDIMLTCFVNLSRNR 385 (460)
Q Consensus 307 ~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~-~~~~~~~~gd~~~t~~s~~srn~ 385 (460)
+|+.|+|+++++||++|+++|+.+++.++.|...+++.++++||..+++++|.+++ ++++++|+||+++||++..+||+
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~ 80 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR 80 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHhhCC-CChHHHHhhc--ccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 386 TVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 386 ~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
++|..+.+| ++.+++.+.+ ++++||...++.+.++++++++++|+.+++|+++.++.+|+++++.|
T Consensus 81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~~~~~~~~i~~l 149 (149)
T PF07479_consen 81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYENESPEEAIEEL 149 (149)
T ss_dssp HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcCcCCHHHHHHcC
Confidence 999999999 8999888888 89999999999999999999999999999999999999999999875
No 27
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.90 E-value=1.8e-22 Score=212.06 Aligned_cols=268 Identities=12% Similarity=0.083 Sum_probs=185.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiV 203 (460)
+++|||||+|.||..||.+|+++| ++|++|||++++++.+.+.+... +. ..+..+++++++++. +|+|
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G--~~V~V~NRt~~k~~~l~~~~~~~----Ga---~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE----GN---LPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhhhc----CC---cccccCCCHHHHHhcCCCCCEE
Confidence 578999999999999999999999 99999999999999887641100 00 012345678887765 9999
Q ss_pred EEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 204 LHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 204 ilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|+|||.. ++++|++++.+.+.+|+++|+++| ..+.+.+...+.+.+. | +.++..|..+.+........ ++.
T Consensus 77 i~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~-G-----i~fldapVSGG~~gA~~G~~-im~ 148 (493)
T PLN02350 77 IILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEK-G-----LLYLGMGVSGGEEGARNGPS-LMP 148 (493)
T ss_pred EEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCcCCHHHhcCCCe-EEe
Confidence 9999964 689999999999999999999998 4444444555555543 3 34666666655433222233 566
Q ss_pred cCCHHHHHHHHHHHhcCCce------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH
Q 012596 283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK 356 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a 356 (460)
|++.+.+++++++|+..+-+ +.+.++. |.+..+|+.+|.+.....+++.|++.++++
T Consensus 149 GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~ 211 (493)
T PLN02350 149 GGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGIEYGDMQLISEAYDVLKS 211 (493)
T ss_pred cCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999987643 5555553 344556677788888889999999999998
Q ss_pred -cCCCcccccccc---CCCceeeecccCCCccchHHHHhh-C-----CCChHHHHhhcccceehhhhHH------HHHHH
Q 012596 357 -MGAKPATITGLS---GTGDIMLTCFVNLSRNRTVGVRLG-S-----GEKLDDILSSMNQVAEGVSTAG------AVIAL 420 (460)
Q Consensus 357 -~Gi~~~~~~~~~---~~gd~~~t~~s~~srn~~~g~~l~-~-----g~~~e~~~~~~~~~~eg~kd~g------~vv~l 420 (460)
.|++++.+.++. .-+.. .+..... .+..+. + ++.++. ..||++ ..+..
T Consensus 212 ~~Gld~~~l~~vf~~~~~g~~----~S~llei--~~~~l~~~d~~~~~f~l~~----------i~Kd~~~kGTg~w~~~~ 275 (493)
T PLN02350 212 VGGLSNEELAEVFAEWNKGEL----ESFLIEI--TADIFSVKDDKGDGYLVDK----------ILDKTGMKGTGKWTVQQ 275 (493)
T ss_pred hCCCCHHHHHHHHHHHcCCCc----cchHHHH--HHHHHhhcCCCCCCchHHH----------HHhhhcccchHHHHHHH
Confidence 599988876641 00100 0000000 011111 1 122222 347777 89999
Q ss_pred HHHcCCCChH-HHHHHHHHhcCCCH
Q 012596 421 AQKYNVKMPV-LTAVARIIDNELTP 444 (460)
Q Consensus 421 A~~~gv~~P~-~~~v~~ll~~~~~~ 444 (460)
|.++|+++|+ .+++.+.+......
T Consensus 276 A~~lgv~~p~i~~av~~r~~s~~k~ 300 (493)
T PLN02350 276 AAELSVAAPTIAASLDARYLSGLKE 300 (493)
T ss_pred HHHhCCCccHHHHHHHHHHHhccHH
Confidence 9999999999 77777776554443
No 28
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.90 E-value=4.2e-22 Score=198.82 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=181.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi 204 (460)
|||+|||+|.||..||.+|.++| ++|++|||++++++.+.+.|. ..++++++++++ +|+||
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g~--------------~~~~s~~~~~~~~~~advVi 64 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG--HEVVGYDVNQEAVDVAGKLGI--------------TARHSLEELVSKLEAPRTIW 64 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCCC--------------eecCCHHHHHHhCCCCCEEE
Confidence 58999999999999999999999 899999999998888876542 345577777655 69999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
+|+|.. .++++++++.+.+++++++|++++ ..+.+.+.+.+.+.+. | +.++.+|..+......... .++.+
T Consensus 65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~-g-----~~~vdapV~G~~~~a~~g~-~~~~g 136 (299)
T PRK12490 65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGGN-SRYKDDLRRAEELAER-G-----IHYVDCGTSGGVWGLRNGY-CLMVG 136 (299)
T ss_pred EEecCchHHHHHHHHHhccCCCCCEEEECCC-CCchhHHHHHHHHHHc-C-----CeEEeCCCCCCHHHHhcCC-eEEec
Confidence 999987 789999999888888999999986 5554444555555432 3 3466777665533222223 35566
Q ss_pred CCHHHHHHHHHHHhcCCc---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--
Q 012596 284 KDRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG-- 358 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~---~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~G-- 358 (460)
++.+.+++++++|+..+- ++++.++. |.+..+|+.+|.+......++.|++.++++.|
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ 199 (299)
T PRK12490 137 GDKEIYDRLEPVFKALAPEGPGYVHAGPV-----------------GSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFD 199 (299)
T ss_pred CCHHHHHHHHHHHHHhcCcCCcEEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 788999999999998875 56666653 34455566778888888999999999999999
Q ss_pred CCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhH---HHHHHHHHHcCCCChHHHHHH
Q 012596 359 AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTA---GAVIALAQKYNVKMPVLTAVA 435 (460)
Q Consensus 359 i~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~---g~vv~lA~~~gv~~P~~~~v~ 435 (460)
+|++.++++...+... .+..... ....+..+.... ......||. ++++++|++.|+++|+...+.
T Consensus 200 ld~~~~~~~~~~~~~~---~s~~l~~--~~~~~~~~~~~~-------~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~ 267 (299)
T PRK12490 200 FDVEDVARLWRNGSVI---RSWLLDL--TVKALAEDPKLA-------GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASL 267 (299)
T ss_pred CCHHHHHHHHcCCcHH---HHHHHHH--HHHHHhhCCChh-------hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 9988887642110000 0000000 112222221110 012234676 799999999999999999884
Q ss_pred -HHHh
Q 012596 436 -RIID 439 (460)
Q Consensus 436 -~ll~ 439 (460)
.++.
T Consensus 268 ~~~~~ 272 (299)
T PRK12490 268 FMRFA 272 (299)
T ss_pred HHHHH
Confidence 5443
No 29
>PLN02858 fructose-bisphosphate aldolase
Probab=99.89 E-value=2.8e-22 Score=232.80 Aligned_cols=271 Identities=14% Similarity=0.129 Sum_probs=201.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
...||||||+|.||..||.+|.++| ++|++|||++++++++.+.|. ..++++.+++++||+||+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~a~~advVi~ 66 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSG--FKVQAFEISTPLMEKFCELGG--------------HRCDSPAEAAKDAAALVV 66 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEE
Confidence 3578999999999999999999999 999999999999999988653 456789999999999999
Q ss_pred ccch-hcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 206 AMPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 206 aVp~-~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+|. .++++++ +++.+.+++|+++|++++ +.+++.+.+.+.+.+. |. .+.++.+|.++...........++
T Consensus 67 ~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~ST-i~p~~~~~la~~l~~~-g~---~~~~lDaPVsGg~~~A~~G~L~im 141 (1378)
T PLN02858 67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRST-ILPLQLQKLEKKLTER-KE---QIFLVDAYVSKGMSDLLNGKLMII 141 (1378)
T ss_pred EcCChHHHHHHHhchhhHHhcCCCcCEEEECCC-CCHHHHHHHHHHHHhc-CC---ceEEEEccCcCCHHHHhcCCeEEE
Confidence 9996 4678887 467777888999999986 8887766777776654 31 144677776655433323344567
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 282 ASKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
.|++.+.+++++++|+.++-++++ .++. |.+..+|+.+|.+......++.|++.+|++.|++
T Consensus 142 vGG~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld 204 (1378)
T PLN02858 142 ASGRSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLVASAEAMALGVRAGIH 204 (1378)
T ss_pred EcCCHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 778899999999999998877764 3553 3445566777888888889999999999999999
Q ss_pred cccccccc--CCCceeeecccCCCccchHHHHhhC-----CCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH
Q 012596 361 PATITGLS--GTGDIMLTCFVNLSRNRTVGVRLGS-----GEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA 433 (460)
Q Consensus 361 ~~~~~~~~--~~gd~~~t~~s~~srn~~~g~~l~~-----g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~ 433 (460)
++.++++. +.+... ...++ ...+.. +++++ ...||+++++++|++.|+++|+.+.
T Consensus 205 ~~~l~~vl~~s~g~s~------~~~~~--~~~~~~~d~~~~F~l~----------l~~KDl~la~~~A~~~g~~lpl~~~ 266 (1378)
T PLN02858 205 PWIIYDIISNAAGSSW------IFKNH--VPLLLKDDYIEGRFLN----------VLVQNLGIVLDMAKSLPFPLPLLAV 266 (1378)
T ss_pred HHHHHHHHhcCCccCH------HHHhh--hhHhhcCCCCCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99888752 222111 00111 112211 22332 2459999999999999999999999
Q ss_pred HHHHHh-------cCCCHHHHHHHHh
Q 012596 434 VARIID-------NELTPKKAVLELM 452 (460)
Q Consensus 434 v~~ll~-------~~~~~~~~~~~l~ 452 (460)
+.+++. ++.+....++.+.
T Consensus 267 a~~~~~~a~~~G~g~~D~sav~~~~~ 292 (1378)
T PLN02858 267 AHQQLISGSSSMQGDDTATSLAKVWE 292 (1378)
T ss_pred HHHHHHHHHhcCCCccChHHHHHHHH
Confidence 998884 3555666655443
No 30
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.88 E-value=5.1e-21 Score=191.26 Aligned_cols=274 Identities=14% Similarity=0.122 Sum_probs=182.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi 204 (460)
|||+|||+|.||.+||.+|+++| ++|++|||++++++.+.+.|. ..+++++++++. +|+||
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g~--------------~~~~~~~e~~~~~~~~dvvi 64 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG--HEVVGYDRNPEAVEALAEEGA--------------TGADSLEELVAKLPAPRVVW 64 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCCC--------------eecCCHHHHHhhcCCCCEEE
Confidence 58999999999999999999999 999999999999988876542 345577776664 69999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
+++|.. .++++++++.+.+++++++|+++++. +.+.+.+.+.+.+. | +.++..|..+......... .++.+
T Consensus 65 ~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~-g-----~~~~dapvsG~~~~a~~g~-~~~~g 136 (301)
T PRK09599 65 LMVPAGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEK-G-----IHFVDVGTSGGVWGLERGY-CLMIG 136 (301)
T ss_pred EEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHc-C-----CEEEeCCCCcCHHHHhcCC-eEEec
Confidence 999987 78999999988898999999998744 43334455555443 3 3455666665432221223 34556
Q ss_pred CCHHHHHHHHHHHhcCCc----eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH--c
Q 012596 284 KDRKLANAVQQLLASKHL----RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK--M 357 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~----~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a--~ 357 (460)
++.+.+++++++|+..+- ++.+.++. |.+..+|+.+|.+......++.|++.++++ .
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-----------------G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~ 199 (301)
T PRK09599 137 GDKEAVERLEPIFKALAPRAEDGYLHAGPV-----------------GAGHFVKMVHNGIEYGMMQAYAEGFELLEASRF 199 (301)
T ss_pred CCHHHHHHHHHHHHHHcccccCCeEeECCC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 789999999999998876 66766664 233344555666777778899999999999 9
Q ss_pred CCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHH-HHH
Q 012596 358 GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA-VAR 436 (460)
Q Consensus 358 Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~-v~~ 436 (460)
|+|++++.+....+... .+..... ....+.+......+.. .+.-.+|.+.++..|.+.|+++|.+.. ++.
T Consensus 200 gld~~~~~~~~~~~~~~---~s~~l~~--~~~~~~~~~~~~~~~~----~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~ 270 (301)
T PRK09599 200 DLDLAAVAEVWRRGSVI---RSWLLDL--TADALAEDPKLDEISG----YVEDSGEGRWTVEEAIDLAVPAPVIAAALFM 270 (301)
T ss_pred CCCHHHHHHHHhCCcHH---HHHHHHH--HHHHHhcCCCHHHHHH----HHHhhCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99998887642111000 0000000 1122222111111100 011134568999999999999999998 444
Q ss_pred HHh---cCCCHHHHHHHH
Q 012596 437 IID---NELTPKKAVLEL 451 (460)
Q Consensus 437 ll~---~~~~~~~~~~~l 451 (460)
.+. ....+...++.+
T Consensus 271 ~~~~~~~~~~~~~~~~a~ 288 (301)
T PRK09599 271 RFRSRQEDSFADKVVAAL 288 (301)
T ss_pred HHHhccCCCcHHHHHHHH
Confidence 332 333344444433
No 31
>PLN02858 fructose-bisphosphate aldolase
Probab=99.87 E-value=3.5e-21 Score=223.72 Aligned_cols=273 Identities=13% Similarity=0.136 Sum_probs=196.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
+++|||||+|+||.+||.+|+++| ++|++|||++++++.+.+.|. ...+++.++++.||+||+|
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN--FSVCGYDVYKPTLVRFENAGG--------------LAGNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEe
Confidence 479999999999999999999999 999999999999888877652 2345788888999999999
Q ss_pred cc-hhcHHHHH---HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 207 MP-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 207 Vp-~~~~~~vl---~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|| +.++++++ .++.+.+++++++|++++ +.|++.+.+.+.+.+. + ..+.++.+|..+........+..++.
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~~~~~la~~l~~~-g---~g~~~lDAPVsGg~~~A~~G~L~imv 462 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPGFVIQLERRLENE-G---RDIKLVDAPVSGGVKRAAMGTLTIMA 462 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHHHHHHHHHHHHhh-C---CCcEEEEccCCCChhhhhcCCceEEE
Confidence 99 56688887 346677788999999986 7777666666666652 1 13456777766554333333344566
Q ss_pred cCCHHHHHHHHHHHhcCCceEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 283 SKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
+++.+.+++++++|+..+-++++ .++. |.+..+|+.+|.+......++.|++.++++.|+|+
T Consensus 463 gG~~~~~~~~~plL~~lg~~i~~~~g~~-----------------G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~ 525 (1378)
T PLN02858 463 SGTDEALKSAGSVLSALSEKLYVIKGGC-----------------GAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNT 525 (1378)
T ss_pred ECCHHHHHHHHHHHHHHhCcEEEeCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 67889999999999988877765 4554 33444556677777777899999999999999999
Q ss_pred ccccccc--CCCce-eeeccc--CCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHH
Q 012596 362 ATITGLS--GTGDI-MLTCFV--NLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436 (460)
Q Consensus 362 ~~~~~~~--~~gd~-~~t~~s--~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ 436 (460)
++++++. +.+.. +..... ...++| ..+++++ ...||+++++++|++.|+++|+.+.+.+
T Consensus 526 ~~l~evl~~s~g~s~~~~~~~~~~l~~d~------~~~f~l~----------l~~KDl~l~~~~a~~~g~~~pl~~~~~~ 589 (1378)
T PLN02858 526 RKLFDIISNAGGTSWMFENRVPHMLDNDY------TPYSALD----------IFVKDLGIVSREGSSRKIPLHLSTVAHQ 589 (1378)
T ss_pred HHHHHHHHhhcccChhhhhccchhhcCCC------CCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 9887742 21211 100000 001111 1122222 2459999999999999999999999888
Q ss_pred HHh-------cCCCHHHHHHHHhc
Q 012596 437 IID-------NELTPKKAVLELMS 453 (460)
Q Consensus 437 ll~-------~~~~~~~~~~~l~~ 453 (460)
++. ++.+....++.+..
T Consensus 590 ~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 590 LFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHhcCCCccChHHHHHHHHH
Confidence 884 45566666665543
No 32
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.2e-19 Score=181.35 Aligned_cols=276 Identities=21% Similarity=0.245 Sum_probs=209.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~a 200 (460)
|||+|||.|.+|...|..|++.| |+|+.+|.++++++.+++ |..+.|.|++. ...++.+++|.+++++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNK-GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhC-CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence 79999999999999999999999 999999999999999987 66677877763 123489999999999999
Q ss_pred cEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e 270 (460)
|++|+||++. .++.+++.|.+.++..++||.=++ +.+.+.+.+.+.+.+..... .+.+.+.|.|.+|
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST-VPvGt~~~v~~~i~~~~~~~--~f~v~~NPEFLRE 154 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST-VPVGTTEEVRAKIREENSGK--DFEVASNPEFLRE 154 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC-CCCCchHHHHHHHHhhcccC--CceEecChHHhcC
Confidence 9999999852 467788899999987666666554 88888777777776654332 5678999999886
Q ss_pred Hhc----cCCeEEEEccCCHHHHHHHHHHHhcC---CceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012596 271 LMN----KLPTAMVVASKDRKLANAVQQLLASK---HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (460)
Q Consensus 271 ~~~----g~~~~i~i~~~d~~~~~~l~~lL~~~---g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~ 343 (460)
..+ -.|..+++|..+....+.+++++... ..++..++ +...|+ .||..|.+.+.-
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~-~~~AE~-----------------IKyaaNafLAtK 216 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTD-LREAEL-----------------IKYAANAFLATK 216 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEec-chHHHH-----------------HHHHHHHHHHHH
Confidence 421 25677889887777788888888653 45555443 344443 456667788888
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHh-----hC-CCChHHHHhhcccceehhhhHHHH
Q 012596 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRL-----GS-GEKLDDILSSMNQVAEGVSTAGAV 417 (460)
Q Consensus 344 ~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l-----~~-g~~~e~~~~~~~~~~eg~kd~g~v 417 (460)
...++|+..+|++.|+|..++.+-.|+ +.+.|..+ +. |.+. .||++++
T Consensus 217 IsFiNEia~ice~~g~D~~~V~~gIGl-------------D~RIG~~fl~aG~GyGGsCf-------------PKD~~AL 270 (414)
T COG1004 217 ISFINEIANICEKVGADVKQVAEGIGL-------------DPRIGNHFLNAGFGYGGSCF-------------PKDTKAL 270 (414)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCC-------------CchhhHhhCCCCCCCCCcCC-------------cHhHHHH
Confidence 899999999999999998777653332 12233222 11 2333 3899999
Q ss_pred HHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 012596 418 IALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLP 455 (460)
Q Consensus 418 v~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~~ 455 (460)
++.|+++|.+.++++++.+. ++.+++.+++.+.++-
T Consensus 271 ~~~a~~~~~~~~ll~avv~v--N~~qk~~~~~~i~~~~ 306 (414)
T COG1004 271 IANAEELGYDPNLLEAVVEV--NERRKDKLAEKILNHL 306 (414)
T ss_pred HHHHHhcCCchHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 99999999999999999886 5666777777666553
No 33
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.85 E-value=1.9e-19 Score=179.73 Aligned_cols=275 Identities=10% Similarity=0.068 Sum_probs=177.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---hcCCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a~~~aDiVi 204 (460)
|||+|||+|.||..||.+|+++| ++|++|||++++++.+.+.|.. ...++++ .+..+|+||
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~~~~~dvIi 64 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKEDRTT--------------GVANLRELSQRLSAPRVVW 64 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCc--------------ccCCHHHHHhhcCCCCEEE
Confidence 58999999999999999999999 9999999999999988876532 1123433 346789999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
+|||+..++++++++.+.++++++||+++++...++ ....+.+.+. | +.++..|..+......... .++.++
T Consensus 65 ~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t-~~~~~~~~~~-g-----~~~vda~vsGg~~~a~~G~-~~~~gG 136 (298)
T TIGR00872 65 VMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDS-LRRYKLLKEK-G-----IHLLDCGTSGGVWGRERGY-CFMIGG 136 (298)
T ss_pred EEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCC-eeeeCC
Confidence 999999999999999999999999999998665543 2333333332 3 2355555554332221222 345566
Q ss_pred CHHHHHHHHHHHhcCCc---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--C
Q 012596 285 DRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG--A 359 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~---~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~G--i 359 (460)
+.+.+++++++|+..+- .+.+.++. |....+|+.+|.+......++.|+..++++.| +
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l 199 (298)
T TIGR00872 137 DGEAFARAEPLFADVAPEEQGYLYCGPC-----------------GSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF 199 (298)
T ss_pred CHHHHHHHHHHHHHhcCcCCCEEEECCc-----------------cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 89999999999997664 35555553 22233444556666777889999999999984 6
Q ss_pred CccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHH--H
Q 012596 360 KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR--I 437 (460)
Q Consensus 360 ~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~--l 437 (460)
|++++.++-..+..+ .+..... ....+.++..++.+... +...++.+.++..|.+.|+++|.+..... .
T Consensus 200 d~~~~~~i~~~g~~~---~s~~l~~--~~~~~~~~~~~~~~~~~----~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~ 270 (298)
T TIGR00872 200 DIPEVARVWRRGSVI---RSWLLDL--TAIAFRESPDLAEFSGR----VSDSGEGRWTVIAAIDLGVPAPVIATSLQSRF 270 (298)
T ss_pred CHHHHHHHHcCCchh---HhHHHHH--HHHHHhcCCcHHHHHHH----HHhhccHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 887776541111100 0000000 01112222222222211 11234568899999999999999977332 1
Q ss_pred H-hcC-CCHHHHHHHHh
Q 012596 438 I-DNE-LTPKKAVLELM 452 (460)
Q Consensus 438 l-~~~-~~~~~~~~~l~ 452 (460)
. ... ..|..+++.++
T Consensus 271 ~~~~~~~~~~~~~~~~r 287 (298)
T TIGR00872 271 ASRDLDDFANKVLAALR 287 (298)
T ss_pred HhCCCCCcHHHHHHHHH
Confidence 1 222 34666666554
No 34
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.84 E-value=1.3e-19 Score=190.31 Aligned_cols=206 Identities=12% Similarity=0.086 Sum_probs=153.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC---CCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDiV 203 (460)
|++|||||+|.||+.||.+|+++| ++|++|||++++++.+.+.+.+..+ .+..+++++++++ ++|+|
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~--------~i~~~~s~~e~v~~l~~~d~I 70 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGNT--------RVKGYHTLEELVNSLKKPRKV 70 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcCC--------cceecCCHHHHHhcCCCCCEE
Confidence 468999999999999999999999 9999999999999988765321110 2345678888775 58999
Q ss_pred EEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 204 ilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
|++|++ ..++++++++.++++++++||+++|+...++.+.. +.+.+. | +.++..|..+.+.+...... ++.
T Consensus 71 il~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~-G-----i~fldapVSGG~~gA~~G~~-lm~ 142 (470)
T PTZ00142 71 ILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEK-G-----ILYLGMGVSGGEEGARYGPS-LMP 142 (470)
T ss_pred EEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHc-C-----CeEEcCCCCCCHHHHhcCCE-EEE
Confidence 999775 67899999999999999999999998776654333 333332 3 34666666655433222233 555
Q ss_pred cCCHHHHHHHHHHHhcCCce------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-
Q 012596 283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT- 355 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~- 355 (460)
|++.+.+++++++|+..+-+ +.+.++. |.+.-+|+.+|.+.....+++.|++.+++
T Consensus 143 GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~ 205 (470)
T PTZ00142 143 GGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYGDMQLISESYKLMKH 205 (470)
T ss_pred eCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 66899999999999987655 4554542 34444566677778888899999999998
Q ss_pred HcCCCccccccc
Q 012596 356 KMGAKPATITGL 367 (460)
Q Consensus 356 a~Gi~~~~~~~~ 367 (460)
+.|++++++.++
T Consensus 206 ~~gl~~~~l~~v 217 (470)
T PTZ00142 206 ILGMSNEELSEV 217 (470)
T ss_pred hcCCCHHHHHHH
Confidence 799998877654
No 35
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.82 E-value=4.6e-19 Score=184.55 Aligned_cols=277 Identities=10% Similarity=0.072 Sum_probs=188.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C--CCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L--PENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l--~~~i~a~~~~~ea~~~aDiV 203 (460)
.|||+|||+|.||..||..|++ | ++|++||+++++++.++ .|..+.+.++.. + ...+.++++.+ ++++||++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~advv 80 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIE-KIKECNFY 80 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCCEE
Confidence 5899999999999999999987 6 89999999999999998 554433322211 0 12355666665 57899999
Q ss_pred EEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhh-HHHHHHHHhCCC-CCCEEEEECcccHHHH
Q 012596 204 LHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRM-MSQIIPQALRNP-RQPFIALSGPSFALEL 271 (460)
Q Consensus 204 ilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~-l~e~l~~~lg~~-~~~~~v~~gP~~a~e~ 271 (460)
|+|||.. .+....++|.+.+++++++|..++ +.+.+.+. +...+.+..|.. ...+.+.+.|.+..+.
T Consensus 81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST-v~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G 159 (425)
T PRK15182 81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST-VYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPG 159 (425)
T ss_pred EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC-CCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCC
Confidence 9999954 344445678899999999998886 88876653 344444422321 1234455667665432
Q ss_pred h----ccCCeEEEEccCCHHHHHHHHHHHhcCC-ceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Q 012596 272 M----NKLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346 (460)
Q Consensus 272 ~----~g~~~~i~i~~~d~~~~~~l~~lL~~~g-~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~ 346 (460)
. .+.+.. +++|.+.+..+.++++++... .......+.... +..|+.+|.+.++..++
T Consensus 160 ~a~~~~~~~~r-iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~A-----------------E~~Kl~~N~~~av~Ia~ 221 (425)
T PRK15182 160 DKKHRLTNIKK-ITSGSTAQIAELIDEVYQQIISAGTYKAESIKVA-----------------EAAKVIENTQRDLNIAL 221 (425)
T ss_pred cccccccCCCe-EEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 1 123333 455567788888999988643 123334444333 44456667788889999
Q ss_pred HHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCC
Q 012596 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426 (460)
Q Consensus 347 ~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv 426 (460)
++|+..+|++.|+|.+.+.+.++... ....+.+|. + .|.++. ||..+++..++++|+
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a~~~~~--------~~~~~~pG~-v-GG~Clp-------------kD~~~L~~~a~~~g~ 278 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRAAGSKW--------NFLPFRPGL-V-GGHCIG-------------VDPYYLTHKSQGIGY 278 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHHhcCCC--------CcccCCCCc-c-cccccc-------------ccHHHHHHHHHhcCC
Confidence 99999999999999988876533211 011123344 3 244442 788899999999999
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHh
Q 012596 427 KMPVLTAVARIIDNELTPKKAVLELM 452 (460)
Q Consensus 427 ~~P~~~~v~~ll~~~~~~~~~~~~l~ 452 (460)
++++.+++.++ ++..|..+++.+.
T Consensus 279 ~~~l~~~a~~i--N~~~~~~v~~~~~ 302 (425)
T PRK15182 279 YPEIILAGRRL--NDNMGNYVSEQLI 302 (425)
T ss_pred CcHHHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999987 4556666655443
No 36
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.82 E-value=1.5e-19 Score=164.79 Aligned_cols=155 Identities=20% Similarity=0.230 Sum_probs=117.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||||||+|.||..||.+|.++| ++|++|||++++++++.+.| ++.++++.|+++.+|+||+|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEAG--------------AEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHTT--------------EEEESSHHHHHHHBSEEEE-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHhh--------------hhhhhhhhhHhhcccceEee
Confidence 689999999999999999999999 99999999999999998865 46778999999999999999
Q ss_pred cch-hcHHHHHHH--hhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 207 MPV-QFSSSFLEG--ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 207 Vp~-~~~~~vl~~--i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
||+ .++++++.+ +.+.+++++++|++++ ..+++.+.+.+.+.+. | +.++.+|..+...........++.+
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT-~~p~~~~~~~~~~~~~-g-----~~~vdapV~Gg~~~a~~g~l~~~~g 137 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIIIDMST-ISPETSRELAERLAAK-G-----VRYVDAPVSGGPPGAEEGTLTIMVG 137 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---HHHHHHHHHHHHHT-T-----EEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEEecCC-cchhhhhhhhhhhhhc-c-----ceeeeeeeecccccccccceEEEcc
Confidence 997 678999998 9999999999999986 7777666666666543 3 3455555554432222223345666
Q ss_pred CCHHHHHHHHHHHhcCCceEE
Q 012596 284 KDRKLANAVQQLLASKHLRIS 304 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~ 304 (460)
++.+.+++++++|+..+-+++
T Consensus 138 G~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 138 GDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp S-HHHHHHHHHHHHHHEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCce
Confidence 789999999999998877766
No 37
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.82 E-value=9.7e-19 Score=182.02 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=181.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~ 198 (460)
.+|||+|||+|.||..||..|+++| ++|++||+++++++.++..+ ...+.++.. . ...+.++++ ++
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~~~~----~~ 74 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRATTT----PE 74 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceeeecc----cc
Confidence 5689999999999999999999999 99999999999999876533 222222221 0 122344433 34
Q ss_pred CCcEEEEccch----------hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCC--------CCCCEE
Q 012596 199 GADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--------PRQPFI 260 (460)
Q Consensus 199 ~aDiVilaVp~----------~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~--------~~~~~~ 260 (460)
+||+||+|||. ..+.+++++|.++++++++||..++ +.+.+.+.+...+.+.... ....+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~ 153 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVGATEQMAEWLAEARPDLTFPQQAGEQADIN 153 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCCHHHHHHHHHHHhccCCcccccccCCCCeE
Confidence 79999999997 4677788899999999999998885 8888777777666553111 012345
Q ss_pred EEECcccHHHH----hccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012596 261 ALSGPSFALEL----MNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (460)
Q Consensus 261 v~~gP~~a~e~----~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~ 336 (460)
+.+.|.+..+. ..+.+.. ++++.+.+..++++++|+..+-.+....++...+ ..|+.+
T Consensus 154 v~~~PE~~~~G~~~~~~~~~~~-vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae-----------------~~Kl~~ 215 (415)
T PRK11064 154 IAYCPERVLPGQVMVELIKNDR-VIGGMTPVCSARASELYKIFLEGECVVTNSRTAE-----------------MCKLTE 215 (415)
T ss_pred EEECCCccCCCChhhhhcCCCE-EEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHH-----------------HHHHHH
Confidence 67888654421 1223333 4566688999999999998764444445554444 445566
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHH
Q 012596 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGA 416 (460)
Q Consensus 337 n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~ 416 (460)
|.+.++..+.++|+..+|++.|+|+..+.+.++....+ ....+|.-+ .|.++. ||..+
T Consensus 216 N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~ri--------~~l~pG~G~-GG~Clp-------------kD~~~ 273 (415)
T PRK11064 216 NSFRDVNIAFANELSLICADQGINVWELIRLANRHPRV--------NILQPGPGV-GGHCIA-------------VDPWF 273 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCc--------ccCCCCCCC-CCcccc-------------ccHHH
Confidence 77788889999999999999999998887654321111 001122212 233332 55555
Q ss_pred HHHHHHHcCCCChHHHHHHHHHhcCCCHHHHHHHH
Q 012596 417 VIALAQKYNVKMPVLTAVARIIDNELTPKKAVLEL 451 (460)
Q Consensus 417 vv~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l 451 (460)
+ ..+++...++.+++.++- +..+...++.+
T Consensus 274 L---~~~~~~~~~l~~~a~~~N--~~~~~~v~~~~ 303 (415)
T PRK11064 274 I---VAQNPQQARLIRTAREVN--DGKPHWVIDQV 303 (415)
T ss_pred H---HHhcCCccHHHHHHHHHH--HHhHHHHHHHH
Confidence 5 345677888888888763 44444444433
No 38
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.80 E-value=4.9e-18 Score=178.52 Aligned_cols=282 Identities=16% Similarity=0.210 Sum_probs=195.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C-----CCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L-----PENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l-----~~~i~a~~~~~ea~~~a 200 (460)
||||+|||+|++|..+|..|++.|.+++|+++|.++++++.+++.+.. .+.++.. + ..++.++++..+++++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~-~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP-IYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc-cCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 589999999999999999999986558899999999999999886532 2222221 1 23478889988889999
Q ss_pred cEEEEccchh---------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECc
Q 012596 201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP 265 (460)
Q Consensus 201 DiVilaVp~~---------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP 265 (460)
|++|+|||.. .+.++++.|.++++++++||.-++ +.+.+.+.+.+.+.+...+ ..+.+.+.|
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST-vp~Gtt~~~~~~l~~~~~g--~~f~v~~~P 156 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKG--INFQILSNP 156 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC-CCCChHHHHHHHHHhhCCC--CCeEEEECC
Confidence 9999999621 467788899999998888776554 7777766666666553211 356788999
Q ss_pred ccHHHHhc----cCCeEEEEccCC----HHHHHHHHHHHhcCC-ceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012596 266 SFALELMN----KLPTAMVVASKD----RKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (460)
Q Consensus 266 ~~a~e~~~----g~~~~i~i~~~d----~~~~~~l~~lL~~~g-~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~ 336 (460)
.+..+... -.+..+++|+.+ .+..+++++++...- -......++..+|..|.+ .
T Consensus 157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~-----------------e 219 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLA-----------------A 219 (473)
T ss_pred CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHH-----------------H
Confidence 88764311 234456677764 335788888887542 123344566666666544 4
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHH
Q 012596 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAG 415 (460)
Q Consensus 337 n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g 415 (460)
|.+.++..+.++|+..+|++.|+|...+.+.++....+ +.++ .+|..+ .|.++. ||..
T Consensus 220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~ri-------g~~~l~PG~G~-GG~Clp-------------kD~~ 278 (473)
T PLN02353 220 NAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRI-------GPKFLNASVGF-GGSCFQ-------------KDIL 278 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCcC-------CCCCCCCCCCC-CCcchh-------------hhHH
Confidence 56677888999999999999999987776543321110 0011 112222 233432 7889
Q ss_pred HHHHHHHHcCCC--ChHHHHHHHHHhcCCCHHHHHHHHh
Q 012596 416 AVIALAQKYNVK--MPVLTAVARIIDNELTPKKAVLELM 452 (460)
Q Consensus 416 ~vv~lA~~~gv~--~P~~~~v~~ll~~~~~~~~~~~~l~ 452 (460)
++...|+++|++ .++.+++.++ ++..+...++.+.
T Consensus 279 ~L~~~a~~~g~~~~~~l~~~~~~i--N~~~~~~vv~~~~ 315 (473)
T PLN02353 279 NLVYICECNGLPEVAEYWKQVIKM--NDYQKSRFVNRVV 315 (473)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHH--HHhhHHHHHHHHH
Confidence 999999999998 8888888865 4555666666554
No 39
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.79 E-value=6.5e-18 Score=174.04 Aligned_cols=269 Identities=18% Similarity=0.162 Sum_probs=175.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|.||..+|..|+. | ++|++||+++++++.+++ |....+.++.. ....+..+.+..++++++|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G--~~VigvD~d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N--HEVVALDILPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C--CcEEEEECCHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCE
Confidence 689999999999999988875 8 999999999999998886 33222322221 01234455667777899999
Q ss_pred EEEccchh-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012596 203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (460)
Q Consensus 203 VilaVp~~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~ 271 (460)
||+|||.. ++++++++|.+ +++++++|..++ +.+.+.+.+.+.+.+ ..+..+|.+..+.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST-v~pgtt~~l~~~~~~--------~~v~~~PE~l~~G 146 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST-VPVGFTAAMHKKYRT--------ENIIFSPEFLREG 146 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee-cCCchHHHHHHHhhc--------CcEEECcccccCC
Confidence 99999954 46777888877 688888888775 888776555544432 1245688876542
Q ss_pred hc----cCCeEEEEccCCHHHHHHHHHHHhc--CCceEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Q 012596 272 MN----KLPTAMVVASKDRKLANAVQQLLAS--KHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA 344 (460)
Q Consensus 272 ~~----g~~~~i~i~~~d~~~~~~l~~lL~~--~g~~v~-~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~ 344 (460)
.. -.+..+++|+ +.+..+++.++|.. .+-.+. ...++...|. .|+.+|.+.++..
T Consensus 147 ~a~~d~~~p~rvv~G~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~a~~I 208 (388)
T PRK15057 147 KALYDNLHPSRIVIGE-RSERAERFAALLQEGAIKQNIPTLFTDSTEAEA-----------------IKLFANTYLAMRV 208 (388)
T ss_pred cccccccCCCEEEEEc-CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-----------------HHHHHHHHHHHHH
Confidence 11 1233445554 45667888888853 221222 3345444444 4556677888889
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccc-hHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHH
Q 012596 345 QGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423 (460)
Q Consensus 345 ~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~ 423 (460)
+.++|+..+|+++|+|...+.+..+....+ +..+ .+|.-+ .|.++. ||..++...+
T Consensus 209 a~~NE~a~lae~~GiD~~eV~~a~~~d~ri-------~~~~l~pG~G~-GG~Clp-------------kD~~~L~~~~-- 265 (388)
T PRK15057 209 AYFNELDSYAESLGLNTRQIIEGVCLDPRI-------GNHYNNPSFGY-GGYCLP-------------KDTKQLLANY-- 265 (388)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHhcCCCCC-------CCccCCCCCCC-CCcChh-------------hhHHHHHHhc--
Confidence 999999999999999998887654321111 0010 122222 244442 5666775544
Q ss_pred cCCCChHHHHHHHHHhcCCCHHHHHHHHhc
Q 012596 424 YNVKMPVLTAVARIIDNELTPKKAVLELMS 453 (460)
Q Consensus 424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~ 453 (460)
.+++.|+.+++.++ ++..|...++.+..
T Consensus 266 ~~~~~~l~~~~~~~--N~~~~~~~~~~~~~ 293 (388)
T PRK15057 266 QSVPNNLISAIVDA--NRTRKDFIADAILS 293 (388)
T ss_pred cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 57888999988876 55666666666654
No 40
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.78 E-value=7.3e-18 Score=177.07 Aligned_cols=203 Identities=10% Similarity=0.080 Sum_probs=148.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCcEEEE
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCLH 205 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDiVil 205 (460)
+|||||+|.||.+||.+|+++| ++|++|+|++++++.+.+.+.. + ..+..++++++++ +.+|+||+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G--~~V~v~drt~~~~~~l~~~~~~-----g----~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG--FTVSVYNRTPEKTDEFLAEHAK-----G----KKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHhhccC-----C----CCceecCCHHHHHhhcCCCCEEEE
Confidence 4899999999999999999999 9999999999999988865211 0 0123344566644 56899999
Q ss_pred ccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012596 206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (460)
Q Consensus 206 aVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~ 284 (460)
|||+ ..++++++++.+++.++++||+++|+...++.+. .+.+.+. | +.++.+|..+...+...... ++.|+
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~-g-----i~fvdapVsGG~~gA~~G~~-im~GG 141 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAK-G-----ILFVGSGVSGGEEGARKGPS-IMPGG 141 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhc-C-----CEEEcCCCCCCHHHHhcCCc-CCCCC
Confidence 9997 6789999999999999999999998665554333 2333322 2 34677777665433222223 45667
Q ss_pred CHHHHHHHHHHHhcCCceE------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-Hc
Q 012596 285 DRKLANAVQQLLASKHLRI------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KM 357 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v------~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~-a~ 357 (460)
+.+.+++++++|+..+-++ .+.++. |.+.-+|+.+|.+.....+++.|++.+++ +.
T Consensus 142 ~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~ 204 (467)
T TIGR00873 142 SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL 204 (467)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999766542 343432 34455666778888888999999999985 79
Q ss_pred CCCccccccc
Q 012596 358 GAKPATITGL 367 (460)
Q Consensus 358 Gi~~~~~~~~ 367 (460)
|++++.+.++
T Consensus 205 g~~~~~l~~v 214 (467)
T TIGR00873 205 GLSNEEIAEV 214 (467)
T ss_pred CCCHHHHHHH
Confidence 9998877654
No 41
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.72 E-value=3.3e-16 Score=153.60 Aligned_cols=252 Identities=13% Similarity=0.137 Sum_probs=163.5
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC----eEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL----KVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~----~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|+||.+|+..|.++| + +|++| +|++++.+.+.+.| +..+++..++++++|+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g--~~~~~~i~v~~~r~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASG--VVPPSRISTADDSNPARRDVFQSLG--------------VKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCC--CCCcceEEEEeCCCHHHHHHHHHcC--------------CEEeCChHHHHhcCCE
Confidence 78999999999999999999998 6 89998 99998888776654 3455677788889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
||+|+|.+++.++++++.+.+.++++||++.+|+..+ .+.+.++.. . .+...|+.+.....+. +.+..+
T Consensus 65 Vil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~-------~l~~~~~~~--~-vvr~mP~~~~~~~~~~-~~l~~~ 133 (266)
T PLN02688 65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLA-------DLQEWAGGR--R-VVRVMPNTPCLVGEAA-SVMSLG 133 (266)
T ss_pred EEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHH-------HHHHHcCCC--C-EEEECCCcHHHHhCce-EEEEeC
Confidence 9999999999999999988888899999998888654 233444431 1 2346788776654443 223333
Q ss_pred -cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 283 -SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 283 -~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
+.+.+.++.++++|+..|. +.+.++-. .+.+....|.+ +.+...+..++.|+ +.+.|+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~--------~d~~~~~~g~g-------~a~~~~~~~a~~ea---~~~~Gl~~ 194 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKL--------LDAVTGLSGSG-------PAYIFLAIEALADG---GVAAGLPR 194 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHH--------cchhHhhhcCH-------HHHHHHHHHHHHHH---HHHcCCCH
Confidence 3467889999999999998 55543211 11111111211 22345666777777 88899998
Q ss_pred cccccccCCCceeeecccCCCccchHHHHh-hCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 362 ~~~~~~~~~gd~~~t~~s~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
+...++.. + +.. .....+ ..|...+++.+..- ..-| .....++..++.|+.-.+.+++.+.++.
T Consensus 195 ~~a~~~~~--~---~~~-------gs~~l~~~~~~~~~~l~~~v~-spgG--~t~~~l~~l~~~g~~~~~~~a~~~~~~r 259 (266)
T PLN02688 195 DVALSLAA--Q---TVL-------GAAKMVLETGKHPGQLKDMVT-SPGG--TTIAGVHELEKGGFRAALMNAVVAAAKR 259 (266)
T ss_pred HHHHHHHH--H---HHH-------HHHHHHHhcCCCHHHHHHhCC-CCch--HHHHHHHHHHHCChHHHHHHHHHHHHHH
Confidence 87765310 0 000 001111 22333333322110 1111 2345567777788888888888777654
No 42
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=4.2e-16 Score=155.52 Aligned_cols=265 Identities=17% Similarity=0.153 Sum_probs=180.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG 199 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~ 199 (460)
.++|+|||+|.+|.++|..++++| ++|+.+|.++.+++.++.. ......++.. -...+++++|+++ ++.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G--~~ViG~DIn~~~Vd~ln~G-~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~ 84 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAG--FKVIGVDINQKKVDKLNRG-ESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKE 84 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcC--CceEeEeCCHHHHHHHhCC-cceeecCcHHHHHHHHHhcCCceEecChhh-ccc
Confidence 489999999999999999999999 9999999999999999873 2211112221 1356889999988 479
Q ss_pred CcEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHH-hCCC-CCCEEEEECccc
Q 012596 200 ADYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA-LRNP-RQPFIALSGPSF 267 (460)
Q Consensus 200 aDiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~-lg~~-~~~~~v~~gP~~ 267 (460)
||++|+|||.. .++...+.|++.|++|.++|.=++ +.|.+.+.+...+.+. -|-. ..++.+...|..
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST-~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST-TPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC-CCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 99999999963 366777889999999998887665 7777766666666554 2211 134556666654
Q ss_pred HHH--H---hccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012596 268 ALE--L---MNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL 342 (460)
Q Consensus 268 a~e--~---~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al 342 (460)
... . ....+ -+++|.+++..+....+++..--.+....+...+|+.|++-| ..+..
T Consensus 164 v~PG~~~~el~~~~--kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN-----------------~fRdV 224 (436)
T COG0677 164 VLPGNVLKELVNNP--KVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTEN-----------------TFRDV 224 (436)
T ss_pred cCCCchhhhhhcCC--ceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhh-----------------hhhHH
Confidence 321 0 01111 267888888888889998876555666777787887776554 55777
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHH
Q 012596 343 VAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ 422 (460)
Q Consensus 343 ~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~ 422 (460)
.+++.+|+..+|.++|+|...+.+.+..- +.-..+.+|.-++ |.++. .|--+++..|+
T Consensus 225 NIALaNElali~~~~GIdvwevIeaAnt~--------P~~~~~~PGpGvG-GHCIp-------------vDP~fl~~ka~ 282 (436)
T COG0677 225 NIALANELALICNAMGIDVWEVIEAANTK--------PRVNIFYPGPGVG-GHCIP-------------VDPYFLTWKAP 282 (436)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhccC--------CceeecCCCCCCC-Ccccc-------------cCchheeeccc
Confidence 88899999999999999976666543211 1011112222222 23321 12335666666
Q ss_pred HcCCCChHHHHHHHH
Q 012596 423 KYNVKMPVLTAVARI 437 (460)
Q Consensus 423 ~~gv~~P~~~~v~~l 437 (460)
++|+++.+.++..++
T Consensus 283 ~yg~~~rlI~tAreI 297 (436)
T COG0677 283 EYGLPARLIRTAREI 297 (436)
T ss_pred ccCCchHHHHHHHHH
Confidence 677777776666665
No 43
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=9.5e-15 Score=141.45 Aligned_cols=162 Identities=15% Similarity=0.224 Sum_probs=124.4
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCC-CCe-EEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~-~~~-V~v~~r~-~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
||+.+||+|||+|.||.+++..|.++|. ..+ +++++|+ +++.+.+.+.. ++..+++.+++++++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 67 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------------NVSTTTDWKQHVTSV 67 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------------CcEEeCChHHHHhcC
Confidence 5567899999999999999999998762 233 7788874 66677666531 134456788888999
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV 280 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~ 280 (460)
|+||+++|.+..+++++++.++++ +++||++.+|+..+ .+++.++.. ...++.+|+++.++..+.+....
T Consensus 68 DiViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~-------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 68 DTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPS-------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCHH-------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEee
Confidence 999999999999999999988776 67999999999875 355555432 23468999999998888655443
Q ss_pred EccCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 281 VASKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 281 i~~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
....+.+..+.++++|+..|..+...++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~~e~ 165 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLCTEE 165 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 4456788899999999999988876443
No 44
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=7.9e-15 Score=144.46 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=123.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
.+||+|||+|+||.+|+..|.++|. ..+|++|+|++++++.+.+ .| +..+++..+++++||+|
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g--------------~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG--------------ITITTNNNEVANSADIL 67 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC--------------cEEeCCcHHHHhhCCEE
Confidence 3689999999999999999999873 2479999999988887765 33 23455777778899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|||.+.+.++++++.+.+++++++||+..|+..+ .+++.++.. .-.+...|+.+..++.|. +.+..+
T Consensus 68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~-------~l~~~l~~~--~~vvR~MPN~~~~vg~g~-t~~~~~~ 137 (272)
T PRK12491 68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIK-------STENEFDRK--LKVIRVMPNTPVLVGEGM-SALCFNE 137 (272)
T ss_pred EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHH-------HHHHhcCCC--CcEEEECCChHHHHcCce-EEEEeCC
Confidence 999999999999999999888889999999999875 355555431 135789999988876663 222332
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
..+.+..+.++.+|+..|......++
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~~~~E~ 163 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTEVVNEK 163 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcHH
Confidence 23466788999999999988766554
No 45
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.67 E-value=4.1e-15 Score=147.10 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=134.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC--CCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G--~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+.|||+|||+|+||.+|+..|.++| ..++|++|+|++ ++++.+.+.. ++..+.++.++++++|+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-------------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-------------CceEeCCHHHHHhcCCE
Confidence 4579999999999999999999886 236899999975 4566665431 13455677788889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~ 282 (460)
||+|||++.+.++++++.+.++++++||++.+|+.+++ +.+.++.. ...+...|+.+.....+ .+ ++.+
T Consensus 69 Vilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~-------l~~~~~~~--~~v~r~mPn~~~~~~~~-~t-~~~~ 137 (279)
T PRK07679 69 LFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHS-------IRNLLQKD--VPIIRAMPNTSAAILKS-AT-AISP 137 (279)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH-------HHHHcCCC--CeEEEECCCHHHHHhcc-cE-EEee
Confidence 99999999999999999888888899999999998753 33333321 12355667666544333 23 2333
Q ss_pred cC--CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012596 283 SK--DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 283 ~~--d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+. +.+..+.++++|+..|..+...++.. +.+...+|.+ +.+...+..++.| .+++.|++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~---------~~~~a~~Gsg-------pa~~~~~~eal~e---~~~~~Gl~ 198 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSVVEEEDM---------HAVTALSGSG-------PAYIYYVVEAMEK---AAKKIGLK 198 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEeCHHHh---------hhHHHhhcCH-------HHHHHHHHHHHHH---HHHHcCCC
Confidence 32 36788999999999998776654421 1111111111 1123333444444 48899999
Q ss_pred ccccccc
Q 012596 361 PATITGL 367 (460)
Q Consensus 361 ~~~~~~~ 367 (460)
++...++
T Consensus 199 ~~~a~~~ 205 (279)
T PRK07679 199 EDVAKSL 205 (279)
T ss_pred HHHHHHH
Confidence 8776653
No 46
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.66 E-value=1.3e-15 Score=159.50 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=143.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCC---CcEEEEccchh-cH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG---ADYCLHAMPVQ-FS 212 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVilaVp~~-~~ 212 (460)
||..||.+|+++| ++|++|||++++++.+.+. |.. .++..+++++++++. +|+||+|||+. ++
T Consensus 1 MG~~mA~nL~~~G--~~V~v~nrt~~~~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v 68 (459)
T PRK09287 1 MGKNLALNIASHG--YTVAVYNRTPEKTDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV 68 (459)
T ss_pred CcHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH
Confidence 8999999999999 9999999999999988873 310 134566788887764 89999999975 68
Q ss_pred HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHH
Q 012596 213 SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292 (460)
Q Consensus 213 ~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l 292 (460)
++|++++.+.+.+|.+||+++|....++ +...+.+.+. | +.++..|..+.+.+...... ++.|++.+.++++
T Consensus 69 ~~Vi~~l~~~l~~GdiiID~gn~~~~~t-~~~~~~l~~~-G-----i~fvdapVSGG~~gA~~G~s-iM~GG~~~a~~~~ 140 (459)
T PRK09287 69 DAVIEQLLPLLEKGDIIIDGGNSNYKDT-IRREKELAEK-G-----IHFIGMGVSGGEEGALHGPS-IMPGGQKEAYELV 140 (459)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCCE-EEEeCCHHHHHHH
Confidence 9999999999999999999998554443 3333444432 3 34666666665433222233 4556689999999
Q ss_pred HHHHhcCCceE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-HcCCCcccc
Q 012596 293 QQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KMGAKPATI 364 (460)
Q Consensus 293 ~~lL~~~g~~v-------~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~-a~Gi~~~~~ 364 (460)
+++|+..+-++ .+.++. |.+.-+|+.+|.+.....+++.|++.+++ +.|++++.+
T Consensus 141 ~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l 203 (459)
T PRK09287 141 APILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEI 203 (459)
T ss_pred HHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999766553 444442 34455666778888888999999999999 589998877
Q ss_pred ccc
Q 012596 365 TGL 367 (460)
Q Consensus 365 ~~~ 367 (460)
.++
T Consensus 204 ~~v 206 (459)
T PRK09287 204 ADV 206 (459)
T ss_pred HHH
Confidence 654
No 47
>PRK07680 late competence protein ComER; Validated
Probab=99.64 E-value=4.9e-14 Score=138.97 Aligned_cols=159 Identities=12% Similarity=0.167 Sum_probs=117.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|+||.+++..|.++|. ..+|++|+|++++.+.+.+... ++..+.+..+++.++|+||+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~------------g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP------------GIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC------------CeEEECCHHHHHHhCCEEEE
Confidence 589999999999999999999872 1379999999988777655310 23455677787889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-C
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K 284 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~-~ 284 (460)
|||++.+.++++++.++++++++||++++|+..+ .+.+.++. ..+...|+.+.....|. +.+..+. .
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~-------~L~~~~~~----~~~r~~p~~~~~~~~G~-t~~~~g~~~ 136 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVE-------QLETLVPC----QVARIIPSITNRALSGA-SLFTFGSRC 136 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC----CEEEECCChHHHHhhcc-EEEeeCCCC
Confidence 9999999999999999888889999999988543 34444442 13445566554333443 2223332 3
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 285 DRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 285 d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
+.+..+.++++|+..|..+...+++.
T Consensus 137 ~~~~~~~~~~ll~~~G~~~~i~e~~~ 162 (273)
T PRK07680 137 SEEDQQKLERLFSNISTPLVIEEDIT 162 (273)
T ss_pred CHHHHHHHHHHHHcCCCEEEEChHhc
Confidence 56678999999999998887776643
No 48
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.62 E-value=6.3e-14 Score=140.58 Aligned_cols=255 Identities=16% Similarity=0.124 Sum_probs=158.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-----------~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+|+|+|||+|.||+.||..|+++| ++|++||++++.++...+ .|.- .......+..++..++++.+
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~-~~~~~~~~~~~i~~~~~~~~ 78 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLL-DGEAPDAVLARIRVTDSLAD 78 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-chhhHHHHhcCeEEECcHHH
Confidence 468999999999999999999999 999999999887665432 2210 00000112345677889988
Q ss_pred hcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhc
Q 012596 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN 273 (460)
Q Consensus 196 a~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~ 273 (460)
++++||+|+.|+|.. ....++.++.+..+++.++.+.+.+... ..+.+.+... ...+...|..+...
T Consensus 79 a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~-------~~la~~~~~~--~~~~~~hp~~p~~~-- 147 (308)
T PRK06129 79 AVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA-------SAFTEHLAGR--ERCLVAHPINPPYL-- 147 (308)
T ss_pred hhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH-------HHHHHhcCCc--ccEEEEecCCCccc--
Confidence 889999999999975 3456677777777666666554443322 2233333221 12344444433211
Q ss_pred cCCeEEEEc---cCCHHHHHHHHHHHhcCCceEEEcC-ChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 274 KLPTAMVVA---SKDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 274 g~~~~i~i~---~~d~~~~~~l~~lL~~~g~~v~~~~-Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
.+ .+.+. +.+++.++++++++...|..+...+ +..|. +. | .+...+++|
T Consensus 148 -~~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i~----------------n----rl~~a~~~E 200 (308)
T PRK06129 148 -IP-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----VL----------------N----RLQGALLRE 200 (308)
T ss_pred -Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----HH----------------H----HHHHHHHHH
Confidence 11 22233 3678899999999999998876653 43321 11 1 134478899
Q ss_pred HHHHHHHcCCCcccccccc--CCCceeeecccCCCccchHHHHh-hCCCChHHHHhhcccceehhhhHHHHHHHHHHcCC
Q 012596 350 IRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426 (460)
Q Consensus 350 ~~~la~a~Gi~~~~~~~~~--~~gd~~~t~~s~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv 426 (460)
++.++++.|++++.+.+.. +.|..... . ..+. -.++ ..|... .. ..+|..+..+++++.+.
T Consensus 201 A~~l~~~g~~~~~~id~~~~~~~g~~~~~-~----gp~~-~~d~~~~~g~~-~~---------~~k~~~l~~~~~~~~~~ 264 (308)
T PRK06129 201 AFRLVADGVASVDDIDAVIRDGLGLRWSF-M----GPFE-TIDLNAPGGVA-DY---------AQRYGPMYRRMAAERGQ 264 (308)
T ss_pred HHHHHHcCCCCHHHHHHHHHhccCCCccC-c----CHHH-HHhccccccHH-HH---------HHHHHHHHHhhccccCC
Confidence 9999999999998876542 22211100 0 1111 1111 112211 11 23788899999999999
Q ss_pred CChHHHHHHHHH
Q 012596 427 KMPVLTAVARII 438 (460)
Q Consensus 427 ~~P~~~~v~~ll 438 (460)
+.|+++...+-+
T Consensus 265 ~~~~~~~~~~~~ 276 (308)
T PRK06129 265 PVPWDGELVARV 276 (308)
T ss_pred CchhhHHHHHHH
Confidence 999997766543
No 49
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.62 E-value=7.2e-15 Score=148.81 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=135.9
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHH-----HHHHHhhcCCCccCCCCC
Q 012596 128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAV-----CQSINEKHCNCRYFPEQK 182 (460)
Q Consensus 128 ~kI~IIGaG~--------------------mG~~~A~~La~~G~~~~V~v~~r~~~~-----~~~l~~~g~~~~~~~~~~ 182 (460)
|||.|.|+|+ -|++||.+|+++| ++|++|||+++. .+.+.+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG--~~V~v~Dr~~~~l~~~~~~~l~~~G---------- 68 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG--HDVVLAEPNRSILSEELWKKVEDAG---------- 68 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC--CeEEEEECCHHHhhHHHHHHHHHCC----------
Confidence 6889999987 4889999999999 999999999873 33444333
Q ss_pred CCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC------
Q 012596 183 LPENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------ 255 (460)
Q Consensus 183 l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~------ 255 (460)
+.++++..+++++||+||+|+|... ++++++++.+.++++++||+++++ .+. ..++.+.+.++..
T Consensus 69 ----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~---~~s~~l~~~l~~~~~~~gi 140 (342)
T PRK12557 69 ----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPV---VLYYSLEGELRTKRKDVGI 140 (342)
T ss_pred ----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHH---HHHHHHHHHhcccccccCe
Confidence 4566688888899999999999887 899999999999999999998864 332 2223333333210
Q ss_pred --CCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhccc
Q 012596 256 --RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN 333 (460)
Q Consensus 256 --~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~k 333 (460)
..+..+..+|.++..+..|.++. ...+.+.+.+++++++|+..|.+++..+. + .+ ...|
T Consensus 141 ~~~~p~~v~Gae~g~l~Vm~gg~t~-~~~~~~~e~~e~v~~LL~a~G~~v~~~~~--g--~~--------------~~vk 201 (342)
T PRK12557 141 SSMHPAAVPGTPQHGHYVIAGKTTN-GTELATEEQIEKCVELAESIGKEPYVVPA--D--VV--------------SAVA 201 (342)
T ss_pred eecCCccccccccchheEEeCCCcc-cccCCCHHHHHHHHHHHHHcCCEEEEeCH--H--HH--------------HHHH
Confidence 11222233333333222222221 11234788899999999999988876652 2 12 2233
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 334 l~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
+.+|.+.++...++.|++.++++.|.+|..+.+
T Consensus 202 ~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 202 DMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 345666677788889999999999988776543
No 50
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.59 E-value=1.3e-13 Score=134.10 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=141.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+|||+|||+|+||.+|+..|.++|. ..+|++.+|++++.+.+.+. |. ..+++..+++..+|+|
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~--------------~~~~~~~~~~~~advv 66 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGV--------------VTTTDNQEAVEEADVV 66 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCC--------------cccCcHHHHHhhCCEE
Confidence 4799999999999999999999982 36899999999988755543 21 1255777888999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|||.+..++++.++.+ ..++++|||+..|+..+ .+.+.++. .-.+...|+.+..+..|.. .+..+
T Consensus 67 ~LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~-------~l~~~l~~---~~vvR~MPNt~a~vg~g~t-~i~~~~ 134 (266)
T COG0345 67 FLAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSIE-------TLERLLGG---LRVVRVMPNTPALVGAGVT-AISANA 134 (266)
T ss_pred EEEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHH-------HHHHHcCC---CceEEeCCChHHHHcCcce-eeecCc
Confidence 999999999999999988 77899999999999875 35666652 2357889999888777642 22221
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
..+.+..+.+.++|+..|..+.+.++.+.. +...+|. .+ +.+...+..+..-+.+.|++.+
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~E~~~da---------~TaisGS-------gP---Ayv~~~iEal~~agv~~Gl~~~ 195 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVEESLMDA---------VTALSGS-------GP---AYVFLFIEALADAGVRLGLPRE 195 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEechHHhhH---------HHHHhcC-------CH---HHHHHHHHHHHHHHHHcCCCHH
Confidence 235678889999999999888877654321 1111121 12 2333445555666778888876
Q ss_pred cccc
Q 012596 363 TITG 366 (460)
Q Consensus 363 ~~~~ 366 (460)
+-.+
T Consensus 196 ~A~~ 199 (266)
T COG0345 196 EARE 199 (266)
T ss_pred HHHH
Confidence 5544
No 51
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.58 E-value=1.1e-13 Score=147.36 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=135.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh----cCCCccCCCCCC--CCceEEeCCHHhhcCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK----HCNCRYFPEQKL--PENVIATTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~----g~~~~~~~~~~l--~~~i~a~~~~~ea~~~ 199 (460)
..|||+|||+|.||++||..|+++| ++|++||++++.++.+.+. .....++....+ ..++..++++++++++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G--~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~ 80 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAG--IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG 80 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC
Confidence 3579999999999999999999999 9999999999877655321 000011111111 1236777899888999
Q ss_pred CcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCe
Q 012596 200 ADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPT 277 (460)
Q Consensus 200 aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~ 277 (460)
||+||.|+|... ...++.++.+.++++++|.+.+.|+... .+.+.+.. ....++..|..+... .+.
T Consensus 81 aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s-------~l~~~~~~--~~r~~~~hP~nP~~~---~~L 148 (495)
T PRK07531 81 ADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS-------DLQEGMTH--PERLFVAHPYNPVYL---LPL 148 (495)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCC--cceEEEEecCCCccc---Cce
Confidence 999999999764 4456778888888888888877777653 22333322 123455555443321 122
Q ss_pred EEEEccC--CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHH-HHHHHHHHHHHHHH
Q 012596 278 AMVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMA-ALVAQGCSEIRWLA 354 (460)
Q Consensus 278 ~i~i~~~--d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~-al~~~~~~E~~~la 354 (460)
..++++. +.+.+++++++|+..|......+. ..+|... .+....++|++.++
T Consensus 149 vevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------------------~~~gfi~nrl~~a~~~EA~~L~ 203 (495)
T PRK07531 149 VELVGGGKTSPETIRRAKEILREIGMKPVHIAK-------------------------EIDAFVGDRLLEALWREALWLV 203 (495)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------------------CCcchhHHHHHHHHHHHHHHHH
Confidence 2233332 378999999999999987776542 1223333 23344469999999
Q ss_pred HHcCCCccccccc
Q 012596 355 TKMGAKPATITGL 367 (460)
Q Consensus 355 ~a~Gi~~~~~~~~ 367 (460)
++.|++++++.+.
T Consensus 204 ~~g~~s~~~id~~ 216 (495)
T PRK07531 204 KDGIATTEEIDDV 216 (495)
T ss_pred HcCCCCHHHHHHH
Confidence 9999998877653
No 52
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.57 E-value=5.1e-13 Score=131.10 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=113.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
||||+|||+|+||..++..|.++|.. ++|.+|+|++++.+.+.+. | +.++.+..+++.++|+||
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g--------------~~~~~~~~~~~~~advVi 67 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG--------------VRAATDNQEAAQEADVVV 67 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC--------------CeecCChHHHHhcCCEEE
Confidence 68999999999999999999988621 4799999999888877764 2 234456777788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS- 283 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~- 283 (460)
+|+|...+.++++++.+.+ +++||++++|+..+ .+++.++.. .-.+..-|.++.....+. +.+..+.
T Consensus 68 l~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~-------~l~~~~~~~--~~iv~~~P~~p~~~~~~~-~~i~~~~~ 135 (267)
T PRK11880 68 LAVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLA-------RLERLLGAD--LPVVRAMPNTPALVGAGM-TALTANAL 135 (267)
T ss_pred EEcCHHHHHHHHHHHHhhc--CCEEEEecCCCCHH-------HHHHhcCCC--CcEEEecCCchHHHcCce-EEEecCCC
Confidence 9999999999999998876 57999999998643 344444421 123445677665544332 2222222
Q ss_pred CCHHHHHHHHHHHhcCCceEEEc
Q 012596 284 KDRKLANAVQQLLASKHLRISTS 306 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~ 306 (460)
.+.+..+.++.+|+..|..+...
T Consensus 136 ~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 136 VSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred CCHHHHHHHHHHHHhCCeEEEEC
Confidence 46788999999999999766554
No 53
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.56 E-value=3.9e-13 Score=132.86 Aligned_cols=159 Identities=11% Similarity=0.151 Sum_probs=120.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|+||+|||+|+||.+++..|.++|. .++|++|+|+. ++.+.+.... ..+.++.+..++++++|+|
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~------------~~~~~~~~~~e~~~~aDvV 68 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKY------------PTVELADNEAEIFTKCDHS 68 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHc------------CCeEEeCCHHHHHhhCCEE
Confidence 4789999999999999999998862 26899999864 3445444321 0134456777778899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|+|.+.+.++++++.++++++++||++++|+..+ .+++.++. ...+...|+.+..++.|. +.+...
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~-------~l~~~~~~---~~vvR~MPN~~~~~g~g~-t~~~~~~ 137 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLD-------DLLEITPG---LQVSRLIPSLTSAVGVGT-SLVAHAE 137 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC---CCEEEEeCccHHHHhhhc-EEEecCC
Confidence 999999999999999999888888999999999875 34555543 135788999988877663 322222
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
..+.+..+.++.+|+..|..+...++
T Consensus 138 ~~~~~~~~~v~~l~~~~G~~~~v~E~ 163 (277)
T PRK06928 138 TVNEANKSRLEETLSHFSHVMTIREE 163 (277)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEchh
Confidence 23567788999999999988777654
No 54
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=3e-13 Score=135.80 Aligned_cols=202 Identities=19% Similarity=0.202 Sum_probs=133.0
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccCCCC--CCCCceEEeCCHHhh
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPEQ--KLPENVIATTDAKTA 196 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-----g~~~~~~~~~--~l~~~i~a~~~~~ea 196 (460)
|.+++||+|||+|.||+.||..|+++| ++|++|+++++.++.+++. +.... .+. ....++..+++.+++
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAP--LGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhh--cccHHHHhhceEEeCCHHHH
Confidence 344689999999999999999999999 8999999999887776652 21000 000 011235667788888
Q ss_pred cCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc
Q 012596 197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274 (460)
Q Consensus 197 ~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g 274 (460)
+++||+||+|||... ...++.++.+.++++++|++.+.|+... .+.+.++... . .+..-|..+... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~-------~l~~~~~~~~-~-~ig~h~~~p~~~--~ 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT-------AIAQAVTRPE-R-FVGTHFFTPADV--I 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH-------HHHhhcCCcc-c-EEEEccCCCCcc--C
Confidence 899999999999764 6778888888888888888888877643 2333332210 0 111112211111 1
Q ss_pred CCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 275 LPTAMVVAS--KDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 275 ~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
... .++.+ .+.+.++.+.++|+..|..+... .|..|..+ +| +....++|+.
T Consensus 146 ~l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~---------------------nr----~~~~~~~Ea~ 199 (311)
T PRK06130 146 PLV-EVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIA---------------------NR----IQHALAREAI 199 (311)
T ss_pred ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHH---------------------HH----HHHHHHHHHH
Confidence 122 23333 26789999999999999876655 35443211 11 2235689999
Q ss_pred HHHHHcCCCcccccc
Q 012596 352 WLATKMGAKPATITG 366 (460)
Q Consensus 352 ~la~a~Gi~~~~~~~ 366 (460)
.++++.|++++++..
T Consensus 200 ~l~~~g~~~~~~id~ 214 (311)
T PRK06130 200 SLLEKGVASAEDIDE 214 (311)
T ss_pred HHHHcCCCCHHHHHH
Confidence 999999999877654
No 55
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.54 E-value=2.9e-13 Score=129.22 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=120.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+||| +|+||+++|..|+++| ++|++|+|++++++.+.+.... .+.......++..+ +..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~--~~~~~g~~~~~~~~-~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALE--ELGHGGSDIKVTGA-DNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHh--hccccCCCceEEEe-ChHHHHhcCCEEEEE
Confidence 6899997 8999999999999999 9999999999888777654211 00000011122223 456778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccch----------hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc--
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT----------LRMMSQIIPQALRNPRQPFIALSGPSFALELMNK-- 274 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~----------~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g-- 274 (460)
+|.+.+.++++++.+.+. +++||+++||+..+. ....++.+++.++.. .-.+..-|....+...+
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~ 152 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVD 152 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCC
Confidence 999999999999887765 489999999998620 123346677766531 01222234333332221
Q ss_pred --CCeEEEEccCCHHHHHHHHHHHhcC-CceEEEcCChH
Q 012596 275 --LPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVT 310 (460)
Q Consensus 275 --~~~~i~i~~~d~~~~~~l~~lL~~~-g~~v~~~~Di~ 310 (460)
....+.++|.|.+..+.+.++.+.. ||..+..+.+.
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~ 191 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLE 191 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchh
Confidence 1223457777888889999999998 99988766653
No 56
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.53 E-value=1.3e-13 Score=128.20 Aligned_cols=163 Identities=23% Similarity=0.266 Sum_probs=107.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a 200 (460)
|||+|||+|.+|..+|..|++.| ++|+.+|.++++++.+++ |..+.+.++.. . ..++.++++.++++.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNN-GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhh-ccccccccchhhhhccccccccchhhhhhhhhhhcc
Confidence 79999999999999999999999 999999999999999887 43333434331 1 36788999999989999
Q ss_pred cEEEEccchh----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhh-hHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLR-MMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 201 DiVilaVp~~----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~-~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
|++|+|||.. .+.++++.|.+.++++++||.-++ +.+.+.+ .+..++++..+.. ..+.+.+.|.+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST-vppGtt~~~~~~ile~~~~~~-~~f~la~~PErl~ 155 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST-VPPGTTEELLKPILEKRSGKK-EDFHLAYSPERLR 155 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS-SSTTHHHHHHHHHHHHHCCTT-TCEEEEE------
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE-EEEeeehHhhhhhhhhhcccc-cCCeEEECCCccC
Confidence 9999999853 367788999999998888777665 8888766 4455555543322 4677888888765
Q ss_pred HHh----ccCCeEEEEccCCHHHHHHHHHH
Q 012596 270 ELM----NKLPTAMVVASKDRKLANAVQQL 295 (460)
Q Consensus 270 e~~----~g~~~~i~i~~~d~~~~~~l~~l 295 (460)
+.. ...+..++.|..+....++++++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 321 12455667777666666677664
No 57
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.51 E-value=8.9e-13 Score=130.16 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=112.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||++||..|.++|...+|++|+|+++.++.+.+.|.. ....+++++. ++|+||+||
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV-------------DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC-------------cccCCHHHHh-cCCEEEEeC
Confidence 58999999999999999999998434799999999888777665431 1123566654 599999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE-----ECcccHH-HHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-----SGPSFAL-ELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~-----~gP~~a~-e~~~g~~~~i~i 281 (460)
|...+.+++.++.+ ++++++|+++.. .. ..+.+.+.+..+...+..... .||..+. ....|....++-
T Consensus 67 p~~~~~~~~~~l~~-l~~~~iv~d~gs--~k---~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~ 140 (275)
T PRK08507 67 PVDAIIEILPKLLD-IKENTTIIDLGS--TK---AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD 140 (275)
T ss_pred cHHHHHHHHHHHhc-cCCCCEEEECcc--ch---HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec
Confidence 99999999999988 888998888532 21 123334433221111111011 2232222 123444322211
Q ss_pred c-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHH
Q 012596 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN 320 (460)
Q Consensus 282 ~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkN 320 (460)
. +.+.+.++.++++|+..|.++...+.-.+.+..+++.|
T Consensus 141 ~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~ 180 (275)
T PRK08507 141 VEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISH 180 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhH
Confidence 1 24567889999999999999888776555555554444
No 58
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.51 E-value=1.9e-12 Score=126.78 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=112.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..|||+|||+|+||++++..|.+++. ..++++++|+++.. + +....++.+++.++|+|
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~--------------~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P--------------FVYLQSNEELAKTCDII 61 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C--------------eEEeCChHHHHHhCCEE
Confidence 34799999999999999999998862 23588888876421 1 12345677777899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~- 282 (460)
|+|+|++++.++++++.+++.+ ..||++.+|+..+ .+++.++.. ...+...|+++.....|. +.+...
T Consensus 62 ilavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~-------~l~~~~~~~--~~vvr~mPn~p~~~g~g~-t~i~~~~ 130 (260)
T PTZ00431 62 VLAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNLK-------TLEEMVGVE--AKIVRVMPNTPSLVGQGS-LVFCANN 130 (260)
T ss_pred EEEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccHH-------HHHHHcCCC--CeEEEECCCchhHhccee-EEEEeCC
Confidence 9999999999999999988764 6789999999864 344554431 124678999987765542 222222
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 283 SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 283 ~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
..+.+..+.++++|+..|..+...++
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v~E~ 156 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEIKEK 156 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEChH
Confidence 23567789999999999998887655
No 59
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.50 E-value=7.8e-13 Score=130.85 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=112.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|||+|||+|.||+.+|..|.++| ++|++|+++++..+.+.+.|... ...++. ++++++|+||+|+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGLVD------------EASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCcc------------cccCCH-hHhcCCCEEEEcC
Confidence 68999999999999999999998 89999999998888777655310 122344 4578999999999
Q ss_pred chhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECccc-----HH-HHhccCCeEEEE
Q 012596 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-----AL-ELMNKLPTAMVV 281 (460)
Q Consensus 208 p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~-----a~-e~~~g~~~~i~i 281 (460)
|...+.++++++.+.++++++|++++ ++.... .+.+.+... .++....+.|+.. +. .+..|....++.
T Consensus 66 p~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~~~----~~~~~~~~~-~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p 139 (279)
T PRK07417 66 PIGLLLPPSEQLIPALPPEAIVTDVG-SVKAPI----VEAWEKLHP-RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP 139 (279)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEeCc-chHHHH----HHHHHHhhC-CceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence 99998899999999888887776655 343321 122222211 1111122334331 11 123444433222
Q ss_pred c-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHH
Q 012596 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALK 319 (460)
Q Consensus 282 ~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalk 319 (460)
. ..+.+.++.++++++..|.++...+...+....++..
T Consensus 140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~s 178 (279)
T PRK07417 140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALIS 178 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHc
Confidence 2 3467888999999999998887666544444444333
No 60
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.48 E-value=1.5e-13 Score=138.80 Aligned_cols=146 Identities=20% Similarity=0.279 Sum_probs=110.0
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCC---cccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDG---RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|+|+ |.++++||+.+... ...| ..++.++.+.| +|.+... +.++ ..|+|||||+|.||.
T Consensus 90 ~~gI~v~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~----~w~~~~~---~~~l--~g~~VgIIG~G~IG~ 159 (330)
T PRK12480 90 KHNIVISNVPS-YSPETIAEYSVSIALQLVRRFPDIERRVQAHDF----TWQAEIM---SKPV--KNMTVAIIGTGRIGA 159 (330)
T ss_pred HCCCEEEeCCC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCc----ccccccC---cccc--CCCEEEEECCCHHHH
Confidence 57899999999 99999999999855 3333 34555555555 2433211 2234 467999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~~ 218 (460)
.+|..|...| ++|++|+++++..... +...+++++++++||+|++++|.+. +..++ ++
T Consensus 160 ~vA~~L~~~G--~~V~~~d~~~~~~~~~------------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~ 219 (330)
T PRK12480 160 ATAKIYAGFG--ATITAYDAYPNKDLDF------------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKA 219 (330)
T ss_pred HHHHHHHhCC--CEEEEEeCChhHhhhh------------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHH
Confidence 9999999888 9999999987532211 1123478899999999999999764 55544 56
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+.+.+++++++|++++|-..++
T Consensus 220 ~l~~mk~gavlIN~aRG~~vd~ 241 (330)
T PRK12480 220 MFDHVKKGAILVNAARGAVINT 241 (330)
T ss_pred HHhcCCCCcEEEEcCCccccCH
Confidence 7788999999999999988765
No 61
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=2.6e-12 Score=120.37 Aligned_cols=196 Identities=10% Similarity=0.093 Sum_probs=131.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiVi 204 (460)
|+|+.||+|.||..|..+|.+.| |+|+.||++++.++++...|. ..++++++. +....+|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g--hdvV~yD~n~~av~~~~~~ga--------------~~a~sl~el~~~L~~pr~vW 64 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG--HDVVGYDVNQTAVEELKDEGA--------------TGAASLDELVAKLSAPRIVW 64 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC--CeEEEEcCCHHHHHHHHhcCC--------------ccccCHHHHHHhcCCCcEEE
Confidence 78999999999999999999999 999999999999999988763 222344443 45679999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~ 283 (460)
++||.. .+..+++++++.+.++.+||+-.|.-..++.+.. +.+.++ |-.+.++....|+- +......++++
T Consensus 65 lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~-~~l~~k-gi~flD~GTSGG~~-----G~~~G~~lMiG- 136 (300)
T COG1023 65 LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRA-KLLAEK-GIHFLDVGTSGGVW-----GAERGYCLMIG- 136 (300)
T ss_pred EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHH-HHHHhc-CCeEEeccCCCCch-----hhhcCceEEec-
Confidence 999986 7899999999999999999998776655543222 222222 22222222222222 12223344555
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~ 361 (460)
++.+.++++.++|+..... ++ | ..+.-.+|...=+|...|-.---+.++++|...+.++...|.
T Consensus 137 G~~~a~~~~~pif~~lA~g----e~--G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~ 200 (300)
T COG1023 137 GDEEAVERLEPIFKALAPG----ED--G--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDY 200 (300)
T ss_pred CcHHHHHHHHHHHHhhCcC----cC--c--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4889999999999953221 10 0 000001123333344456666667889999999999877653
No 62
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.47 E-value=9.5e-13 Score=130.81 Aligned_cols=167 Identities=13% Similarity=0.176 Sum_probs=112.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhhc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTAL 197 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea~ 197 (460)
+||+|||+|.||..+|..|+++| ++|++||++++.++++.+. +......... ....++..++++++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 68999999999999999999999 9999999999988776532 1100000000 0123466778888889
Q ss_pred CCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhc
Q 012596 198 LGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMN 273 (460)
Q Consensus 198 ~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~ 273 (460)
++||+||.|+|... ...++.++.+.+++++++++.+.++.+.. +.+.+... .....++ .|.+..
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~-------l~~~~~~~~r~~g~h~~-~Pv~~~---- 147 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE-------IASFTKRPERVIAMHFF-NPVHKM---- 147 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCcccEEEEecC-CCcccC----
Confidence 99999999999764 34567788888888887755444466642 22222211 0112223 454322
Q ss_pred cCCeEEEEccC---CHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 274 KLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 274 g~~~~i~i~~~---d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
+ .+.+.++ +.+.+++++++++..|..+....|..|
T Consensus 148 --~-Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G 185 (288)
T PRK09260 148 --K-LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG 185 (288)
T ss_pred --c-eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence 2 2334443 789999999999999988877777544
No 63
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=138.38 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=118.0
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
++.++.|+|+|+ |+|+++||...... +.+...+|..|.+.|.. |. ......+.++ ..+++||||+|.+|
T Consensus 86 ~~~gI~Vtnvp~-~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~---~~-~~~~~~~~~l--~gktvGIiG~GrIG 158 (324)
T COG1052 86 KERGITVTNVPG-YSTEAVAEHAVALILALARRIHEGDRRVREGNWSL---SG-GPDPLLGFDL--RGKTLGIIGLGRIG 158 (324)
T ss_pred HHCCcEEEeCCC-CCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccc---cC-CcccccccCC--CCCEEEEECCCHHH
Confidence 467799999999 99999999998844 77778888888888844 11 1111223345 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE- 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~- 217 (460)
.++|+++. |++.+|..|+|.+. ....+.+ + .... +++++++.+|+|++.+|.+ .+..++.
T Consensus 159 ~avA~r~~--~Fgm~v~y~~~~~~--~~~~~~~-~------------~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~ 220 (324)
T COG1052 159 QAVARRLK--GFGMKVLYYDRSPN--PEAEKEL-G------------ARYV-DLDELLAESDIISLHCPLTPETRHLINA 220 (324)
T ss_pred HHHHHHHh--cCCCEEEEECCCCC--hHHHhhc-C------------ceec-cHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence 99999999 56699999999874 1111111 1 2233 4889999999999999964 5777774
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+....++++.++|+++.|-..++ ..+.+.|+
T Consensus 221 ~~l~~mk~ga~lVNtaRG~~VDe-~ALi~AL~ 251 (324)
T COG1052 221 EELAKMKPGAILVNTARGGLVDE-QALIDALK 251 (324)
T ss_pred HHHHhCCCCeEEEECCCccccCH-HHHHHHHH
Confidence 56777899999999999977764 23334443
No 64
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.45 E-value=4e-12 Score=124.32 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=128.7
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||+|+||.+|+..|.+.|.. .++.+|+|++++.+.+.+... .+..+++..++++++|+||+|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~------------~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP------------KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC------------CceEeCCHHHHHHhCCEEEEE
Confidence 5899999999999999999998731 246899999988887766421 134556788888899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~ 286 (460)
+|.+.+.++++++. +.+++++|++..|+..+ .+++.++.. ...+...|........+ .+ .+...
T Consensus 69 v~p~~~~~vl~~l~--~~~~~~vis~~ag~~~~-------~l~~~~~~~--~~~~r~~P~~~~a~~~g-~t--~~~~~-- 132 (258)
T PRK06476 69 VRPQIAEEVLRALR--FRPGQTVISVIAATDRA-------ALLEWIGHD--VKLVRAIPLPFVAERKG-VT--AIYPP-- 132 (258)
T ss_pred eCHHHHHHHHHHhc--cCCCCEEEEECCCCCHH-------HHHHHhCCC--CCEEEECCCChhhhCCC-Ce--EecCC--
Confidence 99988999988773 46788999988777654 344444321 23466778766543332 22 23322
Q ss_pred HHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012596 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (460)
Q Consensus 287 ~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~ 366 (460)
.+.++++|+..|-.+...+. + .++.+...++ ..+.+...+.|+...+++.|++++...+
T Consensus 133 --~~~~~~l~~~lG~~~~~~~e-------~-~~d~~~a~~s-----------~~a~~~~~~~~~~~~~~~~Gl~~~~a~~ 191 (258)
T PRK06476 133 --DPFVAALFDALGTAVECDSE-------E-EYDLLAAASA-----------LMATYFGILETATGWLEEQGLKRQKARA 191 (258)
T ss_pred --HHHHHHHHHhcCCcEEECCh-------H-hccceeehhc-----------cHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 25789999998877765322 1 1222211111 1222335789999999999999876554
No 65
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.44 E-value=5.2e-13 Score=110.34 Aligned_cols=93 Identities=26% Similarity=0.338 Sum_probs=76.6
Q ss_pred eEEEECcchHHHHHHHHHHhcC-CCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEEE
Q 012596 129 KVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G-~~~~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (460)
||+|||+|+||.+++..|.++| ..++|.++ +|++++.+++.++.. +.+.. +..++++.+|+||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------------VQATADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------------TEEESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------------cccccCChHHhhccCCEEEE
Confidence 7999999999999999999987 24689955 999999988877531 23444 68888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|||.+.+.+++.++ +...+++++|++.+|
T Consensus 68 av~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVKPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999999 666789999999876
No 66
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.44 E-value=2.2e-12 Score=119.98 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=116.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||+|+|+|+|+||+++|.+|+++| |+|++-+|+.+ ..+...+. ..+ .+.. .+++++.+.+|+||+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag--~eV~igs~r~~~~~~a~a~~-l~~----------~i~~-~~~~dA~~~aDVVvL 66 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG--HEVIIGSSRGPKALAAAAAA-LGP----------LITG-GSNEDAAALADVVVL 66 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC--CeEEEecCCChhHHHHHHHh-hcc----------cccc-CChHHHHhcCCEEEE
Confidence 689999999999999999999999 99999966554 44444332 110 1222 256778899999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc----c------hhhhHHHHHHHHhCCCCCCEEEEECcc--cHHHHh-
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL----N------TLRMMSQIIPQALRNPRQPFIALSGPS--FALELM- 272 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~----~------~~~~l~e~l~~~lg~~~~~~~v~~gP~--~a~e~~- 272 (460)
+||..++.+++.++...+. ++++|+++|.+.+ . .....++.+++.++... ++.+-. .+..+.
T Consensus 67 AVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~ 141 (211)
T COG2085 67 AVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLAD 141 (211)
T ss_pred eccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhcc
Confidence 9999999999999998876 8999999997421 1 12345678888776531 111111 111111
Q ss_pred ---ccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCCh
Q 012596 273 ---NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV 309 (460)
Q Consensus 273 ---~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di 309 (460)
.+....+.+++.|.++.+.+.++.+..|++....+.+
T Consensus 142 ~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L 181 (211)
T COG2085 142 LAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPL 181 (211)
T ss_pred CCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence 1123456788889999999999999999998765543
No 67
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.44 E-value=5.4e-12 Score=132.33 Aligned_cols=163 Identities=15% Similarity=0.242 Sum_probs=112.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+||| +|.||.++|..|.++| ++|++|+|+++.+..+.... ++..+++..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G--~~V~v~~r~~~~~~~~a~~~-------------gv~~~~~~~e~~~~aDvVIla 65 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG--FEVIVTGRDPKKGKEVAKEL-------------GVEYANDNIDAAKDADIVIIS 65 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC--CEEEEEECChHHHHHHHHHc-------------CCeeccCHHHHhccCCEEEEe
Confidence 6899998 8999999999999999 89999999987765554431 123455777788999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc-c
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA-S 283 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~g~~~~i~i~-~ 283 (460)
+|...+.++++++.+.++++++|+++++ +-. .+.+.+.+.++.. .+....+.||..+ ...|....++.+ +
T Consensus 66 vp~~~~~~vl~~l~~~l~~~~iViDvsS-vK~----~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~ 138 (437)
T PRK08655 66 VPINVTEDVIKEVAPHVKEGSLLMDVTS-VKE----RPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEK 138 (437)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEEccc-ccH----HHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCC
Confidence 9999999999999999999999999874 211 2234444444321 1111123345432 223433221111 1
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
.+.+.++.++++|+..|.+++..+.-.+.
T Consensus 139 ~~~~~~~~v~~ll~~~G~~v~~~~~e~HD 167 (437)
T PRK08655 139 RSNPWFDKVKNFLEKEGARVIVTSPEEHD 167 (437)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCHHHHH
Confidence 35788899999999999998876654433
No 68
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.43 E-value=4.1e-13 Score=120.24 Aligned_cols=115 Identities=18% Similarity=0.305 Sum_probs=87.7
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (460)
|+|+|+|+||+.+|..|+++| ++|++++|++ +.+.++++|.......+...........+..+..+.+|+||+|||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 789999999999999999998 9999999999 8888988876433221111111112223332345789999999999
Q ss_pred hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 210 ~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
.+++++++.+++++.+++.|+.++||++.. +.+.+.++
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~------~~l~~~~~ 115 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE------EVLAEYFP 115 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHH------HHHHCHST
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcH------HHHHHHcC
Confidence 999999999999999999999999999875 45555554
No 69
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.41 E-value=6.5e-12 Score=124.79 Aligned_cols=198 Identities=21% Similarity=0.246 Sum_probs=126.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc--CCCccCCCCCC---------CCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH--CNCRYFPEQKL---------PENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g--~~~~~~~~~~l---------~~~i~a~~~~~ 194 (460)
.++||+|||+|.||..+|..|+++| ++|++||++++.++++.+.- ....+.++..+ ..++..+++++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 3579999999999999999999999 99999999998776654320 00011111111 23567788998
Q ss_pred hhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEE--EEECcccHHH
Q 012596 195 TALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALE 270 (460)
Q Consensus 195 ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~--v~~gP~~a~e 270 (460)
+++++||+||.|+|.. ....+++++.+.++++++|++.+.++.+. + +.+.+..+. .+. ....|.+
T Consensus 80 ~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~------~-~~~~~~~~~-r~vg~Hf~~p~~--- 148 (287)
T PRK08293 80 EAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS------Q-FAEATGRPE-KFLALHFANEIW--- 148 (287)
T ss_pred HHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH------H-HHhhcCCcc-cEEEEcCCCCCC---
Confidence 8889999999999965 46778889988888888876655555442 2 222222110 011 1122221
Q ss_pred HhccCCeEEEE--ccCCHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Q 012596 271 LMNKLPTAMVV--ASKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGC 347 (460)
Q Consensus 271 ~~~g~~~~i~i--~~~d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~ 347 (460)
.. +...++ ...+.+.++.+.+++...|...... .|..|.. ...+....+
T Consensus 149 --~~-~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi-------------------------~nRi~~~~~ 200 (287)
T PRK08293 149 --KN-NTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYI-------------------------LNSLLVPFL 200 (287)
T ss_pred --cC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHh-------------------------HHHHHHHHH
Confidence 11 111222 2356789999999999999775543 4543321 123445677
Q ss_pred HHHHHHHHHcCCCcccc
Q 012596 348 SEIRWLATKMGAKPATI 364 (460)
Q Consensus 348 ~E~~~la~a~Gi~~~~~ 364 (460)
+|++.+.+.--.+++++
T Consensus 201 ~ea~~l~~~g~a~~~~i 217 (287)
T PRK08293 201 SAALALWAKGVADPETI 217 (287)
T ss_pred HHHHHHHHcCCCCHHHH
Confidence 88888876644556544
No 70
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.40 E-value=2.3e-11 Score=121.25 Aligned_cols=170 Identities=18% Similarity=0.260 Sum_probs=108.5
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCC
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTD 192 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l-----------~~~g~~~~~~~~~~l~~~i~a~~~ 192 (460)
|+.++||+|||+|.||..||..|+.+| ++|++||++++.++.. .+.|.-..... ......+.++++
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~ 77 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEA-DATLGRIRCTTN 77 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHhceEeeCC
Confidence 445689999999999999999999999 9999999998876532 22221000000 000112445556
Q ss_pred HHhhcCCCcEEEEccch--hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccH
Q 012596 193 AKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFA 268 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~--~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a 268 (460)
.+ ++++||+||.|||. .....++.++.+.++++++|++.+.|+.+.. +.+.++.. ...+.+...|..
T Consensus 78 ~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~-------l~~~~~~~~r~~g~h~~~pp~~- 148 (295)
T PLN02545 78 LE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR-------LASATQRPQQVIGMHFMNPPPI- 148 (295)
T ss_pred HH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCcceEEEeccCCccc-
Confidence 54 57999999999994 4456677888888888988887777776542 23322211 011112222221
Q ss_pred HHHhccCCeEEEEc--cCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 269 LELMNKLPTAMVVA--SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 269 ~e~~~g~~~~i~i~--~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
+.... ++. ..+.+.+++++++|+..|..+....|..|
T Consensus 149 -----~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g 187 (295)
T PLN02545 149 -----MKLVE-IIRGADTSDEVFDATKALAERFGKTVVCSQDYPG 187 (295)
T ss_pred -----CceEE-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc
Confidence 11122 222 24788999999999999988877776543
No 71
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.40 E-value=2.1e-11 Score=120.84 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=125.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-----------l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
.++||+|||+|.||..+|..|+++| ++|++||++++.+++ +.+.|..... .......++..+++.+
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~ 78 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITGTTDLD 78 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH
Confidence 3578999999999999999999999 899999999987642 2233210000 0000112466677776
Q ss_pred hhcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHh
Q 012596 195 TALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELM 272 (460)
Q Consensus 195 ea~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~ 272 (460)
+ +++||+||+|+|.+. ..+++.++.++++++++|++.+.|+... .+.+.++... -.+..-|..+..+.
T Consensus 79 ~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~-------~la~~~~~~~--r~ig~h~~~P~~~~ 148 (282)
T PRK05808 79 D-LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT-------ELAAATKRPD--KVIGMHFFNPVPVM 148 (282)
T ss_pred H-hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHHhhCCCc--ceEEeeccCCcccC
Confidence 5 689999999998644 3688899999999999988888777654 2333333210 11222222221111
Q ss_pred ccCCeEEEE-ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012596 273 NKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (460)
Q Consensus 273 ~g~~~~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~ 351 (460)
.+ ..++. .+.+.+..+.+.++|+..|..+....|..|.. ...++...++|+.
T Consensus 149 ~~--vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i-------------------------~~Ri~~~~~~ea~ 201 (282)
T PRK05808 149 KL--VEIIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFV-------------------------VNRILIPMINEAI 201 (282)
T ss_pred cc--EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChH-------------------------HHHHHHHHHHHHH
Confidence 11 11121 23568899999999999998887767654321 1234556778888
Q ss_pred HHHHHcCCCccc
Q 012596 352 WLATKMGAKPAT 363 (460)
Q Consensus 352 ~la~a~Gi~~~~ 363 (460)
.+.+.--.++++
T Consensus 202 ~~~~~gv~~~~d 213 (282)
T PRK05808 202 FVLAEGVATAED 213 (282)
T ss_pred HHHHhCCCCHHH
Confidence 877543234443
No 72
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.39 E-value=8.7e-12 Score=128.31 Aligned_cols=176 Identities=15% Similarity=0.209 Sum_probs=118.7
Q ss_pred hhhhhhhcccceeeeecccc-chhccCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC
Q 012596 101 VKVAWEKLVRWSRTWRSKAK-TDILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF 178 (460)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~ 178 (460)
.+.-|...+++++....+.+ .+++..+++|+||| +|.||+.+|..|.++| ++|++|+++..
T Consensus 71 ~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G--~~V~~~d~~~~--------------- 133 (374)
T PRK11199 71 IEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG--YQVRILEQDDW--------------- 133 (374)
T ss_pred HHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCC--CeEEEeCCCcc---------------
Confidence 44456566666665555443 33444568999999 9999999999999999 99999998631
Q ss_pred CCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC
Q 012596 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP 258 (460)
Q Consensus 179 ~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~ 258 (460)
+++++++.+||+||+|+|.....++++++.+ ++++++|++++. +-. .+.+.+.+..+..++.
T Consensus 134 ------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK~----~~~~~~~~~~~~~fvg 195 (374)
T PRK11199 134 ------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VKN----APLQAMLAAHSGPVLG 195 (374)
T ss_pred ------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-ccH----HHHHHHHHhCCCCEEe
Confidence 1455667899999999999988899999988 889999999853 221 1222333333222222
Q ss_pred EEEEECcccHHHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 259 FIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 259 ~~v~~gP~~a~e~~~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
...+.||.... ..+. .+++.+ .+.+.++.+.+++...|.++...+.-.+....
T Consensus 196 ~HPm~G~~~~~--~~~~--~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~ 249 (374)
T PRK11199 196 LHPMFGPDVGS--LAKQ--VVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNM 249 (374)
T ss_pred eCCCCCCCCcc--cCCC--EEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHH
Confidence 23455554321 1222 234443 35678899999999999998887655544433
No 73
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.38 E-value=1.5e-11 Score=122.45 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=111.1
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCC-ccCCCCCC--------CCceEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNC-RYFPEQKL--------PENVIATTDA 193 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~-~~~~~~~l--------~~~i~a~~~~ 193 (460)
|+..+||+|||+|.||..||..|+++| ++|++||++++.++.+.+. ..+. .+.+...+ ..++..++++
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 78 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL 78 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH
Confidence 445689999999999999999999999 9999999999877664321 0000 00000001 1346677777
Q ss_pred HhhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC--CCEEEEECcccHH
Q 012596 194 KTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFAL 269 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~--~~~~v~~gP~~a~ 269 (460)
++ +++||+||+|+|.. ....++.++.+.+++++++++.+.++.+. .+.+.+..+. ....+ .-|....
T Consensus 79 ~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s-------~la~~~~~~~r~~g~h~-~~p~~~~ 149 (292)
T PRK07530 79 ED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT-------RLASATDRPERFIGIHF-MNPVPVM 149 (292)
T ss_pred HH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcccEEEeec-cCCcccC
Confidence 54 78999999999974 34667888989999999988766666543 1333222110 01111 1232211
Q ss_pred HHhccCCeEEEE-ccCCHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 270 ELMNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 270 e~~~g~~~~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
....++. .+.+.+.++++.++|+..|..+.+..|..
T Consensus 150 -----~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p 186 (292)
T PRK07530 150 -----KLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP 186 (292)
T ss_pred -----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Confidence 1111222 24678999999999999998877777754
No 74
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.38 E-value=2.3e-12 Score=128.21 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=109.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh------cCCC----ccCCCC---CCCCceEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK------HCNC----RYFPEQ---KLPENVIATTD 192 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~------g~~~----~~~~~~---~l~~~i~a~~~ 192 (460)
+..||+|||+|.||+.+|..|+++| ++|++||++++.++...+. +... ...... .+..++..+++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 3578999999999999999999999 8999999999877643221 1100 000000 01223556666
Q ss_pred HHhhcCCCcEEEEccchhc--HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHH
Q 012596 193 AKTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFAL 269 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~~~--~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~ 269 (460)
. +++++||+||+|+|.+. ...++.++.+.+++++++++.++|+... .+.+.+...... .....-|....
T Consensus 80 ~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~-------~la~~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 80 Y-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA-------EIATALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred H-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH-------HHHhhcCCcccEEEEecCCCcccC
Confidence 6 46799999999999764 5778888988899999999888887653 223332221000 01111222111
Q ss_pred HHhccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 270 ELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 270 e~~~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
. ...++-+ ..+.+.++++.++++..|..+....|..|
T Consensus 152 ~-----~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pg 189 (291)
T PRK06035 152 K-----LIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPG 189 (291)
T ss_pred c-----cEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 0 0111111 13678899999999999988887777544
No 75
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.37 E-value=1.1e-12 Score=132.77 Aligned_cols=148 Identities=22% Similarity=0.261 Sum_probs=107.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCc---ccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGR---DRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|+|. |.++++||+.+... ...|+ .++.++.+.| .|.+... +.++ ..++|+|||+|.||.
T Consensus 90 ~~gi~v~n~~~-~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~----~~~~~~~---~~~l--~g~~VgIIG~G~IG~ 159 (332)
T PRK08605 90 KYNLIISNVPS-YSPESIAEFTVTQAINLVRHFNQIQTKVREHDF----RWEPPIL---SRSI--KDLKVAVIGTGRIGL 159 (332)
T ss_pred HCCCEEEeCCC-CChHHHHHHHHHHHHHHhcChHHHHHHHHhCCc----ccccccc---ccee--CCCEEEEECCCHHHH
Confidence 57899999999 99999999999855 44444 4444555555 2433221 2334 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-HHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl-~~ 218 (460)
.+|.+|++ +++.+|.+||++.... ... + +...+++++++++||+|++++|.+. .+.++ .+
T Consensus 160 ~vA~~L~~-~~g~~V~~~d~~~~~~--~~~-~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~ 221 (332)
T PRK08605 160 AVAKIFAK-GYGSDVVAYDPFPNAK--AAT-Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNAD 221 (332)
T ss_pred HHHHHHHh-cCCCEEEEECCCccHh--HHh-h--------------ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHH
Confidence 99999954 3338999999876432 111 1 1233578899999999999999765 44444 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
..+.+++++++|++++|...++
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~ 243 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDT 243 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCH
Confidence 6777899999999999988765
No 76
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.37 E-value=2.6e-11 Score=121.57 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=111.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.||..+|..|.+.|..++|++|+|+++..+.+.+.|.. .....+.+++++++|+||+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~------------~~~~~~~~~~~~~aDvViia 73 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG------------DRVTTSAAEAVKGADLVILC 73 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC------------ceecCCHHHHhcCCCEEEEC
Confidence 479999999999999999999988334899999999888777665431 12334666778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEE----------CcccHH-HHhccC
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS----------GPSFAL-ELMNKL 275 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~----------gP~~a~-e~~~g~ 275 (460)
+|.....++++++.+.++++++|+++. ++... +.+.+.+.++. ...++. ||..+. ++..|.
T Consensus 74 vp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~~----~~~~~~~~~~~---~~~~v~~hPm~g~e~~G~~~a~~~l~~g~ 145 (307)
T PRK07502 74 VPVGASGAVAAEIAPHLKPGAIVTDVG-SVKAS----VIAAMAPHLPE---GVHFIPGHPLAGTEHSGPDAGFAELFENR 145 (307)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEeCc-cchHH----HHHHHHHhCCC---CCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence 999988899999988888888777653 23322 12223232221 111222 222211 233443
Q ss_pred CeEEEE-ccCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 276 PTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 276 ~~~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
...+.. .+.+.+.++.+.++|+..|.++...+.-...
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD 183 (307)
T PRK07502 146 WCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHD 183 (307)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHh
Confidence 332222 2456788999999999999888775543333
No 77
>PLN02256 arogenate dehydrogenase
Probab=99.35 E-value=5.7e-11 Score=118.79 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
++|||+|||+|.||..+|..|.+.| ++|++|++++.. +...+.| +...++.++++ .++|+||
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G--~~V~~~d~~~~~-~~a~~~g--------------v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG--HTVLATSRSDYS-DIAAELG--------------VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECccHH-HHHHHcC--------------CeeeCCHHHHhhCCCCEEE
Confidence 4689999999999999999999988 899999998632 2222223 12345677765 4799999
Q ss_pred EccchhcHHHHHHHh-hhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH----hccCCeEE
Q 012596 205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL----MNKLPTAM 279 (460)
Q Consensus 205 laVp~~~~~~vl~~i-~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~----~~g~~~~i 279 (460)
+|||...+.++++++ .+.++++++|+++..+-. .+.+.+.+.++.. . ..+..-|.++.+. ..+.. +
T Consensus 98 lavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~-----~~~~~~~~~l~~~-~-~~V~~HPmaG~e~~~~~~~~~~--~ 168 (304)
T PLN02256 98 LCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKE-----FPKNLLLQVLPEE-F-DILCTHPMFGPESGKGGWAGLP--F 168 (304)
T ss_pred EecCHHHHHHHHHhhhhhccCCCCEEEecCCchH-----HHHHHHHHhCCCC-C-eEEecCCCCCCCCCccccCCCe--E
Confidence 999999999999998 677888999999875211 2223455544321 1 1122233333321 22222 1
Q ss_pred EEc-------cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 280 VVA-------SKDRKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 280 ~i~-------~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
++. ..+.+.++.++++++..|.++...+--.+++..
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~v 211 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYA 211 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHH
Confidence 222 235678899999999999988876554555443
No 78
>PRK07574 formate dehydrogenase; Provisional
Probab=99.34 E-value=6e-12 Score=129.22 Aligned_cols=151 Identities=11% Similarity=0.131 Sum_probs=109.9
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCC---cccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDG---RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|+|. +..+++||+.+... ...| ..++.++.+.|.. ........++ ..++|||||+|+||.
T Consensus 135 ~~gI~V~n~~g-~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~------~~~~~~~~~L--~gktVGIvG~G~IG~ 205 (385)
T PRK07574 135 EHGITVAEVTG-SNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNI------ADCVSRSYDL--EGMTVGIVGAGRIGL 205 (385)
T ss_pred HCCcEEEcCCC-CchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc------ccccccceec--CCCEEEEECCCHHHH
Confidence 56899999998 88999999998865 4444 4455556665532 1111112234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-H
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-G 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~ 218 (460)
.+|++|..-| ++|.+|+|.....+.....+ +....+++++++.||+|++++|.+ .++.++. +
T Consensus 206 ~vA~~l~~fG--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~ 269 (385)
T PRK07574 206 AVLRRLKPFD--VKLHYTDRHRLPEEVEQELG--------------LTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDAD 269 (385)
T ss_pred HHHHHHHhCC--CEEEEECCCCCchhhHhhcC--------------ceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHH
Confidence 9999999777 99999999753222111211 233357899999999999999954 5778774 5
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 270 ~l~~mk~ga~lIN~aRG~iVDe 291 (385)
T PRK07574 270 VLSRMKRGSYLVNTARGKIVDR 291 (385)
T ss_pred HHhcCCCCcEEEECCCCchhhH
Confidence 6778999999999999877654
No 79
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.33 E-value=5.9e-11 Score=119.14 Aligned_cols=150 Identities=14% Similarity=0.142 Sum_probs=103.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l-~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|+|||+|+||.++|.+|.+.| ++|++++++..+.... .+.| +... +.+++++.||+|+
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG--~~Vvv~~r~~~~s~~~A~~~G--------------~~~~-s~~eaa~~ADVVv 78 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSG--VDVVVGLREGSKSWKKAEADG--------------FEVL-TVAEAAKWADVIM 78 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCC--CEEEEEECCchhhHHHHHHCC--------------CeeC-CHHHHHhcCCEEE
Confidence 3589999999999999999999999 8999888875443332 2323 2222 7788899999999
Q ss_pred EccchhcHHHHH-HHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-------HhccCC
Q 012596 205 HAMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-------LMNKLP 276 (460)
Q Consensus 205 laVp~~~~~~vl-~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e-------~~~g~~ 276 (460)
++||.....+++ +++.+.++++++| ++..|+.... .....+. ..+ .+...|..+.. .+.|.+
T Consensus 79 LaVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~-------~~~~p~~-~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~ 148 (330)
T PRK05479 79 ILLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF-------GQIVPPA-DVD-VIMVAPKGPGHLVRREYEEGGGVP 148 (330)
T ss_pred EcCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh-------ceeccCC-CCc-EEEeCCCCCchhhhhhhhcCCCce
Confidence 999998888888 7799999988877 6777877642 2222222 122 34555766554 334444
Q ss_pred eEEEEcc-CCHHHHHHHHHHHhcCCce
Q 012596 277 TAMVVAS-KDRKLANAVQQLLASKHLR 302 (460)
Q Consensus 277 ~~i~i~~-~d~~~~~~l~~lL~~~g~~ 302 (460)
..+.+.. .+.+..+.+..++...|..
T Consensus 149 ~l~av~~d~t~~a~~~a~~l~~aiG~~ 175 (330)
T PRK05479 149 CLIAVHQDASGNAKDLALAYAKGIGGT 175 (330)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 3221221 2367788889999877644
No 80
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.33 E-value=4.2e-12 Score=128.65 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=112.2
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcc-cceeeeeccccchhccCCCeEEEECcchHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLV-RWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
+.++.++|+|. |..+++||+..... +.....++.++.+.|.+.. .|...+ ..+.++ ..++|||||+|+||
T Consensus 88 ~~gI~v~n~~g-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~--~~g~~L--~gktvgIiG~G~IG 162 (333)
T PRK13243 88 RRGIYVTNTPG-VLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM--FLGYDV--YGKTIGIIGFGRIG 162 (333)
T ss_pred HcCCEEEECCC-CChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc--ccccCC--CCCEEEEECcCHHH
Confidence 56899999998 99999999998854 4455567777788785311 121111 112334 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|++|...| ++|.+|+|+..... ....+ +. ..+++++++.||+|++++|.+ .+..++ .
T Consensus 163 ~~vA~~l~~~G--~~V~~~d~~~~~~~-~~~~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 163 QAVARRAKGFG--MRILYYSRTRKPEA-EKELG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred HHHHHHHHHCC--CEEEEECCCCChhh-HHHcC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence 99999999887 89999999764321 11111 12 237888899999999999964 467766 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCH
Confidence 67788999999999999876654
No 81
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.32 E-value=2.2e-11 Score=124.77 Aligned_cols=164 Identities=17% Similarity=0.245 Sum_probs=106.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
++|+|||+|.||++||..|.++| ++|.+|+++++..+.....+.... . ..+++.++++++||+||+||
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~~~~~~--------~--~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARALGFGVI--------D--ELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHhcCCCC--------c--ccccCHHHHhcCCCEEEEeC
Confidence 47999999999999999999999 899999988765544433332110 0 12346777889999999999
Q ss_pred chhcHHHHHHHhhh-cCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEEC-----cccHH-HHhccCCeE
Q 012596 208 PVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSG-----PSFAL-ELMNKLPTA 278 (460)
Q Consensus 208 p~~~~~~vl~~i~~-~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~g-----P~~a~-e~~~g~~~~ 278 (460)
|...+.++++++.+ .++++++|.++. ++... +.+.+.+.++.. +.....+.| +..+. .+..+..+.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~~----i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i 143 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVG-SVKGA----ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWV 143 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCc-cccHH----HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence 99999999999987 477787766654 34322 122333322211 000001222 22222 334555444
Q ss_pred EEEcc-CCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 279 MVVAS-KDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 279 i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
++... .+.+.++.++++|+..|..+...+.
T Consensus 144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~ 174 (359)
T PRK06545 144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDA 174 (359)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 33322 4678899999999999988865543
No 82
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.32 E-value=7.3e-11 Score=118.56 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=124.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC----CCccCCCCCCCCceEEeCCHHhhcC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC----NCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~---g~----~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
..+||+|||+|.||..||..|+.+| ++|++||++++..+.+.+. .. ... ........++..+++++++++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~l~~av~ 82 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQG-LAPGASPARLRFVATIEACVA 82 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChhhHHhhceecCCHHHHhc
Confidence 3578999999999999999999999 9999999998765543221 00 000 000112245677788989899
Q ss_pred CCcEEEEccchh-cH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-CEEEEECcccHHHHhccC
Q 012596 199 GADYCLHAMPVQ-FS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PFIALSGPSFALELMNKL 275 (460)
Q Consensus 199 ~aDiVilaVp~~-~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-~~~v~~gP~~a~e~~~g~ 275 (460)
+||+|+.|+|.. .+ ..++.++.+.++++++|.+.+.|+... .+.+.+..+.. -..-...|.+...
T Consensus 83 ~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s-------~la~~~~~p~R~~g~HffnP~~~~p----- 150 (321)
T PRK07066 83 DADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT-------DFYARATHPERCVVGHPFNPVYLLP----- 150 (321)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHH-------HHHHhcCCcccEEEEecCCccccCc-----
Confidence 999999999964 34 557788999999998666655555432 23333332111 1112233332221
Q ss_pred CeEEEEcc-CCHHHHHHHHHHHhcCCceEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHH
Q 012596 276 PTAMVVAS-KDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL 353 (460)
Q Consensus 276 ~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~-~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~l 353 (460)
..-++.+. .+++.++++.+++...|...... .|+.|.. . ..+....++|++.+
T Consensus 151 LVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi-----~--------------------NRl~~a~~~EA~~l 205 (321)
T PRK07066 151 LVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFI-----A--------------------DRLLEALWREALHL 205 (321)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHH-----H--------------------HHHHHHHHHHHHHH
Confidence 11112222 36789999999999999766554 5655421 1 23445567788777
Q ss_pred HHHcCCCcccc
Q 012596 354 ATKMGAKPATI 364 (460)
Q Consensus 354 a~a~Gi~~~~~ 364 (460)
.+.-..+++++
T Consensus 206 v~eGvas~edI 216 (321)
T PRK07066 206 VNEGVATTGEI 216 (321)
T ss_pred HHhCCCCHHHH
Confidence 66644555544
No 83
>PLN03139 formate dehydrogenase; Provisional
Probab=99.31 E-value=9.8e-12 Score=127.59 Aligned_cols=152 Identities=11% Similarity=0.094 Sum_probs=111.8
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.|+|+|. +...++||+.+... +.....++.++.+.|.. ......+.++ ..++|||||+|+||
T Consensus 141 ~~~gI~V~n~~g-~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~------~~~~~~~~~L--~gktVGIVG~G~IG 211 (386)
T PLN03139 141 AAAGLTVAEVTG-SNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNV------AGIAYRAYDL--EGKTVGTVGAGRIG 211 (386)
T ss_pred HHCCeEEEECCC-cCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcc------ccccCCCcCC--CCCEEEEEeecHHH
Confidence 357899999998 99999999998854 44445566667776632 1111112334 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl-~ 217 (460)
..+|++|..-| .+|.+|++.....+...+.| +...++++++++.||+|++++|. ..+..++ .
T Consensus 212 ~~vA~~L~afG--~~V~~~d~~~~~~~~~~~~g--------------~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 275 (386)
T PLN03139 212 RLLLQRLKPFN--CNLLYHDRLKMDPELEKETG--------------AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK 275 (386)
T ss_pred HHHHHHHHHCC--CEEEEECCCCcchhhHhhcC--------------ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH
Confidence 99999999777 89999998753222222222 23345789999999999999995 4577777 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
++...+++++++|+++.|-..++
T Consensus 276 ~~l~~mk~ga~lIN~aRG~iVDe 298 (386)
T PLN03139 276 ERIAKMKKGVLIVNNARGAIMDT 298 (386)
T ss_pred HHHhhCCCCeEEEECCCCchhhH
Confidence 57788999999999999876653
No 84
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=6.3e-11 Score=118.32 Aligned_cols=202 Identities=13% Similarity=0.127 Sum_probs=139.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---hhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~---ea~~~aDiV 203 (460)
.+.||+||+|.||..+|.+++++| +.|.+|+|+.++.+++.++....+ ++..+.+++ ..++...-|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G--~~VavyNRt~~ktd~f~~~~~~~k---------~i~~~~sieefV~~Le~PRkI 71 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHG--YTVAVYNRTTEKTDEFLAERAKGK---------NIVPAYSIEEFVASLEKPRKI 71 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcC--ceEEEEeCCHHHHHHHHHhCccCC---------CccccCcHHHHHHHhcCCceE
Confidence 468999999999999999999999 999999999999998877543211 122223444 446789999
Q ss_pred EEccch-hcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccH-HHHhccCCeEEEE
Q 012596 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA-LELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~-~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a-~e~~~g~~~~i~i 281 (460)
+++|++ ..++.++++|+++|.++.+||+-.|....+|.+...+.-++ | +.++..-..+ ++.+...|. ++
T Consensus 72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~--G-----i~FvG~GVSGGEeGA~~GPS--iM 142 (473)
T COG0362 72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEK--G-----ILFVGMGVSGGEEGARHGPS--IM 142 (473)
T ss_pred EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhc--C-----CeEEeccccccccccccCCC--cC
Confidence 999998 56899999999999999999999998888875554443322 2 2233222222 233333343 45
Q ss_pred ccCCHHHHHHHHHHHhcCCce-------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Q 012596 282 ASKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~-------v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la 354 (460)
-|++.++.+.++++|.....+ .+...| |..+=.|...|-.---=.+.++|++.+.
T Consensus 143 pGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~------------------GAGHfVKmVHNGIEYgDMQlIaE~Y~il 204 (473)
T COG0362 143 PGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPD------------------GAGHFVKMVHNGIEYGDMQLIAEAYDIL 204 (473)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCC------------------CCCceeeeeecCchHHHHHHHHHHHHHH
Confidence 567899999999999853222 222222 3333344445554444567889999998
Q ss_pred HH-cCCCcccccc
Q 012596 355 TK-MGAKPATITG 366 (460)
Q Consensus 355 ~a-~Gi~~~~~~~ 366 (460)
+. +|++.+.+.+
T Consensus 205 k~~lgls~~ei~~ 217 (473)
T COG0362 205 KDGLGLSAEEIAE 217 (473)
T ss_pred HHhcCCCHHHHHH
Confidence 87 7888665543
No 85
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.31 E-value=7.1e-11 Score=125.74 Aligned_cols=197 Identities=15% Similarity=0.159 Sum_probs=126.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------hhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~-----------~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
..+||+|||+|.||..||..|+++| ++|++||++++.+++.. ++|.-... .-.....++..+++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE-ECERTLKRLIPVTDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhccEEeCCHH
Confidence 3578999999999999999999999 99999999998776432 22210000 0001123567788887
Q ss_pred hhcCCCcEEEEccchh-cH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHH
Q 012596 195 TALLGADYCLHAMPVQ-FS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALE 270 (460)
Q Consensus 195 ea~~~aDiVilaVp~~-~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e 270 (460)
+ +.+||+||.|++.. .+ ..++.++.+.++++++|.+-+.++.+. . +.+.+..+ .... .+..|....
T Consensus 81 ~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~---~----iA~~~~~p~r~~G~-HFf~Papv~- 150 (503)
T TIGR02279 81 A-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT---A----IAAGLARPERVAGL-HFFNPAPVM- 150 (503)
T ss_pred H-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH---H----HHHhcCcccceEEE-eccCccccC-
Confidence 6 57999999999964 44 456677888888888777655555553 1 22222211 1111 122222111
Q ss_pred HhccCCeEEEEccC---CHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Q 012596 271 LMNKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGC 347 (460)
Q Consensus 271 ~~~g~~~~i~i~~~---d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~ 347 (460)
..+.+.++ +.+.++++.++++..|..+....|..|. +.| .+....+
T Consensus 151 ------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rl~~~~~ 199 (503)
T TIGR02279 151 ------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVN--------------------RVARPYY 199 (503)
T ss_pred ------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHH--------------------HHHHHHH
Confidence 12334444 7889999999999999888777765442 111 1224577
Q ss_pred HHHHHHHHHcCCCcccccc
Q 012596 348 SEIRWLATKMGAKPATITG 366 (460)
Q Consensus 348 ~E~~~la~a~Gi~~~~~~~ 366 (460)
+|++.++++.+++++++..
T Consensus 200 ~EA~~l~e~g~a~~~~ID~ 218 (503)
T TIGR02279 200 AEALRALEEQVAAPAVLDA 218 (503)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 8888888888887765543
No 86
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.31 E-value=1.4e-10 Score=123.83 Aligned_cols=197 Identities=18% Similarity=0.194 Sum_probs=125.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l-----------~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
..||+|||+|.||..||..|+++| ++|++||++++.+++. .+.|.-... .-...-.++..++++++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE-QADAALARLRPVEALAD 83 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH
Confidence 478999999999999999999999 9999999999987663 222310000 00001134677788876
Q ss_pred hcCCCcEEEEccchh-cHHH-HHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQ-FSSS-FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~~~~-vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~ 271 (460)
+.+||+||.||+.. .++. ++.++...+++++++.+-+.++.+. .+.+....+ ..... +..|....
T Consensus 84 -~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~-------~la~~~~~p~r~~G~h-ff~Pa~v~-- 152 (507)
T PRK08268 84 -LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT-------AIAAALKHPERVAGLH-FFNPVPLM-- 152 (507)
T ss_pred -hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEe-ecCCcccC--
Confidence 57999999999964 4554 5567777788888886555556664 133322211 01122 22232221
Q ss_pred hccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 272 ~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
+...++.+ .+.+.++++.+++...|..+....|..|. +.| .+....++|
T Consensus 153 ----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rll~~~~~E 203 (507)
T PRK08268 153 ----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVN--------------------RAARPYYTE 203 (507)
T ss_pred ----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHH--------------------HHHHHHHHH
Confidence 11223333 47899999999999998877776764431 112 122347788
Q ss_pred HHHHHHHcCCCcccccc
Q 012596 350 IRWLATKMGAKPATITG 366 (460)
Q Consensus 350 ~~~la~a~Gi~~~~~~~ 366 (460)
++.++++.|++++++.+
T Consensus 204 a~~l~~~g~~~~~~iD~ 220 (507)
T PRK08268 204 ALRVLEEGVADPATIDA 220 (507)
T ss_pred HHHHHHcCCCCHHHHHH
Confidence 88888888887665543
No 87
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.30 E-value=1.6e-10 Score=115.95 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=105.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~-~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+||+|||+|+||.++|..|.+.| ++|+++++. .+..+.+.+.|. ... +..++++.+|+|++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG--~~Viv~~~~~~~~~~~a~~~Gv--------------~~~-s~~ea~~~ADiVvL 65 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG--LNVIVGLRKGGASWKKATEDGF--------------KVG-TVEEAIPQADLIMN 65 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC--CeEEEEECcChhhHHHHHHCCC--------------EEC-CHHHHHhcCCEEEE
Confidence 578999999999999999999999 788876654 344555544432 233 57778899999999
Q ss_pred ccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-H------hccCCe
Q 012596 206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L------MNKLPT 277 (460)
Q Consensus 206 aVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e-~------~~g~~~ 277 (460)
++|++ +...+++++.+.++++. +|++..|+.... +...++.. . -.+...|+.+.. + +.|.+.
T Consensus 66 aVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~-------~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~ 135 (314)
T TIGR00465 66 LLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHF-------VQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPT 135 (314)
T ss_pred eCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhh-------ccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeE
Confidence 99988 66777778988888774 899999998652 33344431 2 246778887776 3 455433
Q ss_pred EEEEc-cCCHHHHHHHHHHHhcCCce
Q 012596 278 AMVVA-SKDRKLANAVQQLLASKHLR 302 (460)
Q Consensus 278 ~i~i~-~~d~~~~~~l~~lL~~~g~~ 302 (460)
.+.+. ..+.+..+.+..+|+..|..
T Consensus 136 l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 136 LIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 22122 23567788899999988765
No 88
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.30 E-value=8.2e-12 Score=125.55 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=112.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+..++|+|.|. ....++||+..... +.....++.++++.|++ ....+.++ ..+++||||+|++|+
T Consensus 87 ~~gi~V~nap~-~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~--------~~~~g~el--~gkTvGIiG~G~IG~ 155 (324)
T COG0111 87 KRGILVVNAPG-GNAISVAELVLALLLALARRIPDADASQRRGEWDR--------KAFRGTEL--AGKTVGIIGLGRIGR 155 (324)
T ss_pred hcCCEEEeCCC-cchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc--------cccccccc--cCCEEEEECCCHHHH
Confidence 34699999999 88999999998844 67777777788887744 11223335 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-
Q 012596 141 AMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE- 217 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~- 217 (460)
.+|.++..-| .+|.+||+.. ..... .. .....++++++++.||+|++.+|.+ .++.++.
T Consensus 156 ~va~~l~afg--m~v~~~d~~~~~~~~~--~~--------------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~ 217 (324)
T COG0111 156 AVAKRLKAFG--MKVIGYDPYSPRERAG--VD--------------GVVGVDSLDELLAEADILTLHLPLTPETRGLINA 217 (324)
T ss_pred HHHHHHHhCC--CeEEEECCCCchhhhc--cc--------------cceecccHHHHHhhCCEEEEcCCCCcchhcccCH
Confidence 9999999777 9999999933 21111 11 1233457999999999999999954 5788774
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....||+|+++|+++.|-..+.
T Consensus 218 ~~~a~MK~gailIN~aRG~vVde 240 (324)
T COG0111 218 EELAKMKPGAILINAARGGVVDE 240 (324)
T ss_pred HHHhhCCCCeEEEECCCcceecH
Confidence 45677899999999999977664
No 89
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.29 E-value=1.3e-10 Score=114.48 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=110.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCH-HhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDA-KTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~--~~~l~~~g~~~~~~~~~~l~~~i~a~~~~-~ea~~~aDiV 203 (460)
+++|+|+|+|.||+.+|..|.++| +.|.+++++... .+.-.+.|.. + ..+.+. .+++..+|+|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g--~~v~i~g~d~~~~~~~~a~~lgv~--d----------~~~~~~~~~~~~~aD~V 68 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG--LVVRIIGRDRSAATLKAALELGVI--D----------ELTVAGLAEAAAEADLV 68 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC--CeEEEEeecCcHHHHHHHhhcCcc--c----------ccccchhhhhcccCCEE
Confidence 689999999999999999999999 888777776543 3332222321 0 111222 4567789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCC--CCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~--~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
|+|||-..+.++++++.+.++++++|.++.. + ...+.+.+.+..+. ..++...+.||..-.....+. .+++
T Consensus 69 ivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S-~----K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~--~~vl 141 (279)
T COG0287 69 IVAVPIEATEEVLKELAPHLKKGAIVTDVGS-V----KSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENA--VVVL 141 (279)
T ss_pred EEeccHHHHHHHHHHhcccCCCCCEEEeccc-c----cHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCC--EEEE
Confidence 9999999999999999999999999998763 1 12334455555433 122223445553111222333 2334
Q ss_pred cc---CCHHHHHHHHHHHhcCCceEEEcCChHHHHH
Q 012596 282 AS---KDRKLANAVQQLLASKHLRISTSSDVTGVEI 314 (460)
Q Consensus 282 ~~---~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~ 314 (460)
.. .+.+.++++.+++...|.+++..+.-.++..
T Consensus 142 tp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~ 177 (279)
T COG0287 142 TPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRV 177 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHH
Confidence 32 3467899999999999988887665455443
No 90
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.27 E-value=1.4e-10 Score=115.22 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=121.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-----------l~~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+.||+|||+|.||..||..|+.+| ++|++||++++.+++ +.+.|..... .-.....++..+++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~- 80 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER-ERDAALARLRFTTDLG- 80 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-
Confidence 468999999999999999999999 999999999987665 2222211000 0001123566788885
Q ss_pred hcCCCcEEEEccchh-cH-HHHHHHhhhcC-CCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHH
Q 012596 196 ALLGADYCLHAMPVQ-FS-SSFLEGISDYV-DPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALEL 271 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~~-~~vl~~i~~~l-~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~e~ 271 (460)
.+++||+||.|+|.. .+ ..++..+.+.+ ++++++++.+.++.... +......+... ......|.....
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~-------la~~~~~~~r~~g~hf~~P~~~~~- 152 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK-------LAAATKRPGRVLGLHFFNPVPVLP- 152 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCccEEEEecCCCcccCc-
Confidence 479999999999964 44 44667777777 78999998887666542 22222211010 112222322111
Q ss_pred hccCCeEEEE-ccCCHHHHHHHHHHHh-cCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVV-ASKDRKLANAVQQLLA-SKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (460)
Q Consensus 272 ~~g~~~~i~i-~~~d~~~~~~l~~lL~-~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E 349 (460)
...++. ...+++.++++.+++. ..|..+....|..|.. ...+....++|
T Consensus 153 ----lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi-------------------------~nRi~~~~~~E 203 (286)
T PRK07819 153 ----LVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFV-------------------------VNALLVPYLLS 203 (286)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCChH-------------------------HHHHHHHHHHH
Confidence 112222 3457899999999987 4776666556644321 12345567788
Q ss_pred HHHHHHHcCCCccc
Q 012596 350 IRWLATKMGAKPAT 363 (460)
Q Consensus 350 ~~~la~a~Gi~~~~ 363 (460)
++.+.+.--.++++
T Consensus 204 a~~ll~eGv~~~~d 217 (286)
T PRK07819 204 AIRMVESGFATAED 217 (286)
T ss_pred HHHHHHhCCCCHHH
Confidence 88877533234444
No 91
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.21 E-value=4.7e-11 Score=120.36 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=109.7
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.|+|.|+ |..+++||+..... +.....++.++++.|... +...+. +.++ ..++|||||+|++|
T Consensus 86 ~~~gI~V~n~~~-~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~--~~~~~~---g~~L--~gktvGIiG~G~IG 157 (323)
T PRK15409 86 TARKILLMHTPT-VLTETVADTLMALVLSTARRVVEVAERVKAGEWTAS--IGPDWF---GTDV--HHKTLGIVGMGRIG 157 (323)
T ss_pred HHCCCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccc--Cccccc---cCCC--CCCEEEEEcccHHH
Confidence 357899999999 99999999997744 555566777778877431 111111 2345 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|+++. .+++.+|.+|++..... .....+ +.. .+++++++.||+|++++|.+ .++.++ .
T Consensus 158 ~~va~~l~-~~fgm~V~~~~~~~~~~-~~~~~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~ 220 (323)
T PRK15409 158 MALAQRAH-FGFNMPILYNARRHHKE-AEERFN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGA 220 (323)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCchh-hHHhcC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH
Confidence 99999987 23348999999864211 111111 122 37899999999999999954 577776 3
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 221 ~~l~~mk~ga~lIN~aRG~vVde 243 (323)
T PRK15409 221 EQFAKMKSSAIFINAGRGPVVDE 243 (323)
T ss_pred HHHhcCCCCeEEEECCCccccCH
Confidence 46778899999999999977654
No 92
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.20 E-value=2.9e-11 Score=105.22 Aligned_cols=98 Identities=26% Similarity=0.302 Sum_probs=67.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+||+|||+|++|..++..|.++| +.|. +|+|+.+..+++...-. .. ...++.+.++++|++|
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag--~~v~~v~srs~~sa~~a~~~~~------------~~-~~~~~~~~~~~aDlv~ 73 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG--HEVVGVYSRSPASAERAAAFIG------------AG-AILDLEEILRDADLVF 73 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT--SEEEEESSCHH-HHHHHHC--T------------T------TTGGGCC-SEEE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCcccccccccccc------------cc-cccccccccccCCEEE
Confidence 3589999999999999999999999 8887 55788776666654310 11 1235667889999999
Q ss_pred EccchhcHHHHHHHhhhc--CCCCCeEEEeccCCcc
Q 012596 205 HAMPVQFSSSFLEGISDY--VDPGLPFISLSKGLEL 238 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~--l~~~~iIV~~~~Gi~~ 238 (460)
++||++.+.++.++|... ..++++++.++-.++.
T Consensus 74 iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 74 IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred EEechHHHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 999999999999999877 7789999999854544
No 93
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.20 E-value=1.6e-09 Score=106.92 Aligned_cols=213 Identities=16% Similarity=0.163 Sum_probs=126.9
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHHH-----HHHHhhcCCCccCCCCC
Q 012596 128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAVC-----QSINEKHCNCRYFPEQK 182 (460)
Q Consensus 128 ~kI~IIGaG~--------------------mG~~~A~~La~~G~~~~V~v~~r~~~~~-----~~l~~~g~~~~~~~~~~ 182 (460)
|||.|.|+|+ -|.+||.+|+++| |+|++|||+++.+ +.+.+.|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG--heV~V~Drnrsa~e~e~~e~LaeaG---------- 68 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG--HDVVLAEPNREFMSDDLWKKVEDAG---------- 68 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhHHHHHCC----------
Confidence 7899999997 4889999999999 9999999987644 3455554
Q ss_pred CCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhh-hHHHHHH---HHhCC-CC
Q 012596 183 LPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLR-MMSQIIP---QALRN-PR 256 (460)
Q Consensus 183 l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~-~l~e~l~---~~lg~-~~ 256 (460)
+..++++.++++++|+||+|+|.. ++++++.++.+.+++|+++|++++ +++++.. .+.+.++ +-+|. .+
T Consensus 69 ----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~ST-IsP~t~~~~~e~~l~~~r~d~~v~s~ 143 (341)
T TIGR01724 69 ----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCT-VSPVVLYYSLEKILRLKRTDVGISSM 143 (341)
T ss_pred ----CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCC-CCHHHHHHHHHHHhhcCccccCeecc
Confidence 345668889999999999999965 478898889999999999999986 7765422 2222222 11111 12
Q ss_pred CCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEE-cCChHHH--HHHHHHHHHHHHHHHHHh---
Q 012596 257 QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST-SSDVTGV--EIAGALKNVLAIAAGIVV--- 330 (460)
Q Consensus 257 ~~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~--~~~kalkNv~ai~~g~~~--- 330 (460)
+|.++-..|.+..-+..|.. ..--+-.+.++.+++.++-++.+-..+. ..|+.+. .++.++.-+. ..|+.+
T Consensus 144 HP~~vP~~~~~~~~~~~~~~-~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta~~--~~gil~y~~ 220 (341)
T TIGR01724 144 HPAAVPGTPQHGHYVIGGKP-TAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTAVA--LAGVLDYYY 220 (341)
T ss_pred CCCCCCCCCCCceeeecccc-ccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHHH--HHHHHHHHH
Confidence 33322222221110111110 0011113578899999999987766554 3344332 1333222111 112221
Q ss_pred -c-ccCCCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012596 331 -G-MNLGNN--SMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 331 -~-~kl~~n--~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+ ..++.+ .....+...+.-+..+-+..|++
T Consensus 221 ~~t~i~~ap~~~~~~~~~~~l~~~a~l~~~~Gi~ 254 (341)
T TIGR01724 221 VGTQIINAPKEMIEKQILMTLQTMASLVETSGVE 254 (341)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1 012222 22244556667777788888876
No 94
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.18 E-value=6.3e-11 Score=123.18 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=108.6
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.|+|.|. +..+++||+..... +.....++.++++.|.+ .. ..+.++ ..++|||||+|++|.
T Consensus 96 ~~gI~V~n~pg-~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~------~~--~~~~~L--~gktvGIiG~G~IG~ 164 (409)
T PRK11790 96 KRGIPVFNAPF-SNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNK------SA--AGSFEV--RGKTLGIVGYGHIGT 164 (409)
T ss_pred hCCCEEEeCCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccc------cc--cCcccC--CCCEEEEECCCHHHH
Confidence 47899999999 99999999998854 44444556666666632 21 112334 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|+++..-| .+|.+|++.+... .+ .+....+++++++.||+|++++|.+ .+..++ .+
T Consensus 165 ~vA~~~~~fG--m~V~~~d~~~~~~-----~~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~ 224 (409)
T PRK11790 165 QLSVLAESLG--MRVYFYDIEDKLP-----LG-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE 224 (409)
T ss_pred HHHHHHHHCC--CEEEEECCCcccc-----cC-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence 9999999766 9999999864210 00 1223457999999999999999964 577777 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 225 ~l~~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 225 ELALMKPGAILINASRGTVVDI 246 (409)
T ss_pred HHhcCCCCeEEEECCCCcccCH
Confidence 6778899999999999977664
No 95
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.17 E-value=6e-11 Score=127.19 Aligned_cols=148 Identities=12% Similarity=0.180 Sum_probs=109.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|.|. +...++||+..... +.....++.++.+.|++. .+ .+.++ ..++|||||+|+||.
T Consensus 83 ~~gI~V~n~pg-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-----~~---~g~~l--~gktvgIiG~G~IG~ 151 (525)
T TIGR01327 83 ARGILVVNAPT-GNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK-----AF---MGTEL--YGKTLGVIGLGRIGS 151 (525)
T ss_pred HCCCEEEeCCC-cChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc-----cc---Ccccc--CCCEEEEECCCHHHH
Confidence 56899999998 99999999998844 444556666677766431 11 12334 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|++|..-| ++|++||+.... +...+.+ +...++++++++.||+|++++|.+ .++.++ .+
T Consensus 152 ~vA~~l~~fG--~~V~~~d~~~~~-~~~~~~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~ 214 (525)
T TIGR01327 152 IVAKRAKAFG--MKVLAYDPYISP-ERAEQLG--------------VELVDDLDELLARADFITVHTPLTPETRGLIGAE 214 (525)
T ss_pred HHHHHHHhCC--CEEEEECCCCCh-hHHHhcC--------------CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHH
Confidence 9999999777 899999985321 1111211 233457899999999999999965 567766 35
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 215 ~l~~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred HHhcCCCCeEEEEcCCCceeCH
Confidence 5667899999999999876654
No 96
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.17 E-value=6.8e-11 Score=126.83 Aligned_cols=148 Identities=13% Similarity=0.175 Sum_probs=110.0
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.++|.|. +...++||+.+... +.....++.++.+.|++ .. ..+.++ ..++|||||+|+||
T Consensus 84 ~~~gI~V~n~p~-~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~------~~--~~g~~l--~gktvgIiG~G~IG 152 (526)
T PRK13581 84 TRRGIIVVNAPT-GNTISAAEHTIALMLALARNIPQAHASLKAGKWER------KK--FMGVEL--YGKTLGIIGLGRIG 152 (526)
T ss_pred HHCCCEEEeCCC-CChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCc------cC--cccccc--CCCEEEEECCCHHH
Confidence 367899999999 89999999998854 44444555666666643 11 112234 36899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-H
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-E 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~ 217 (460)
..+|++|..-| ++|++|++.... +.....+ +... +++++++.||+|++++|.+ .+..++ .
T Consensus 153 ~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 153 SEVAKRAKAFG--MKVIAYDPYISP-ERAAQLG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred HHHHHHHHhCC--CEEEEECCCCCh-hHHHhcC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence 99999999877 899999985421 1111212 2233 7889999999999999965 577777 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~vde 237 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGIIDE 237 (526)
T ss_pred HHHhcCCCCeEEEECCCCceeCH
Confidence 67788999999999999877654
No 97
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.17 E-value=4.7e-11 Score=119.90 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=108.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|.|. |..+++||+..... +.....++.++.+.|....-|. .......++ ..++|||||.|++|.
T Consensus 84 ~~gI~v~n~~g-~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~--~~~~~~~~L--~gktvGIiG~G~IG~ 158 (311)
T PRK08410 84 KKGIAVKNVAG-YSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFT--HISRPLGEI--KGKKWGIIGLGTIGK 158 (311)
T ss_pred hCCCEEEcCCC-CCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCcc--ccCcccccc--CCCEEEEECCCHHHH
Confidence 57899999999 99999999998854 5555567777777774311000 000112234 368999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|+++..-| .+|..|+|..... ..+ +. ..+++++++.||+|++++|.+ .++.++ ++
T Consensus 159 ~vA~~~~~fg--m~V~~~d~~~~~~----~~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 159 RVAKIAQAFG--AKVVYYSTSGKNK----NEE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred HHHHHHhhcC--CEEEEECCCcccc----ccC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHH
Confidence 9999998555 9999999864210 001 11 237899999999999999954 567766 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 218 ~~~~Mk~~a~lIN~aRG~vVDe 239 (311)
T PRK08410 218 ELKLLKDGAILINVGRGGIVNE 239 (311)
T ss_pred HHHhCCCCeEEEECCCccccCH
Confidence 6677899999999999977664
No 98
>PLN02306 hydroxypyruvate reductase
Probab=99.16 E-value=1.2e-10 Score=119.96 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.|+|+|+ +...++||+..... +.....++.++.+.|.+ |.+.+ ..+.++ ..++|||||+|.+|
T Consensus 106 ~~~gI~V~n~pg-~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~---~~~~~--~~g~~L--~gktvGIiG~G~IG 177 (386)
T PLN02306 106 NKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYEG---WLPHL--FVGNLL--KGQTVGVIGAGRIG 177 (386)
T ss_pred HHCCCEEEECCC-cCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcc---ccccc--cCCcCC--CCCEEEEECCCHHH
Confidence 357899999998 99999999999854 45555567777787742 43221 112334 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHH-HHHH-HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAV-CQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL 216 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~-~~~l-~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl 216 (460)
..+|++|.. +++.+|.+||+.... .+.. ...+......... +..+....+++++++.||+|++++|.+ .++.++
T Consensus 178 ~~vA~~l~~-~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li 254 (386)
T PLN02306 178 SAYARMMVE-GFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ--PVTWKRASSMEEVLREADVISLHPVLDKTTYHLI 254 (386)
T ss_pred HHHHHHHHh-cCCCEEEEECCCCchhhhhhhhhhcccccccccc--cccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence 999999863 234899999987532 1111 1111100000000 001122357999999999999999954 577777
Q ss_pred H-HhhhcCCCCCeEEEeccCCccch
Q 012596 217 E-GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 217 ~-~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
. +....|++++++|+++.|-..++
T Consensus 255 n~~~l~~MK~ga~lIN~aRG~lVDe 279 (386)
T PLN02306 255 NKERLALMKKEAVLVNASRGPVIDE 279 (386)
T ss_pred CHHHHHhCCCCeEEEECCCccccCH
Confidence 3 46778899999999999877664
No 99
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.14 E-value=1.2e-09 Score=122.26 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=108.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.||.+++..|.+.|+.++|++|++++++++.+.+.|... ...++..++++++|+||+|
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID------------RGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC------------cccCCHHHHhcCCCEEEEC
Confidence 4789999999999999999999884357999999998877766655310 1234667778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC---CEEEEECccc-----HH-HHhccCCe
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ---PFIALSGPSF-----AL-ELMNKLPT 277 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~---~~~v~~gP~~-----a~-e~~~g~~~ 277 (460)
+|.+.+.++++++.++++++++|+++. |+.... .+.+.+.++.... +...+.|+.. +. +...+...
T Consensus 71 vp~~~~~~vl~~l~~~~~~~~ii~d~~-svk~~~----~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~ 145 (735)
T PRK14806 71 VPVLAMEKVLADLKPLLSEHAIVTDVG-STKGNV----VDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKV 145 (735)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEcC-CCchHH----HHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeE
Confidence 999999999999999888887776665 343222 2333333322100 0011122221 11 22234333
Q ss_pred EEEE-ccCCHHHHHHHHHHHhcCCceEEEcC
Q 012596 278 AMVV-ASKDRKLANAVQQLLASKHLRISTSS 307 (460)
Q Consensus 278 ~i~i-~~~d~~~~~~l~~lL~~~g~~v~~~~ 307 (460)
.++. ...+.+..+.++++|+..|.++...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 146 ILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 3332 23567788999999999998776653
No 100
>PLN02712 arogenate dehydrogenase
Probab=99.14 E-value=2.3e-09 Score=117.73 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=108.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi 204 (460)
++|||+|||+|.||..+|..|.+.| ++|++|+|+... +...+.| +...++.++++ .++|+||
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~-~~A~~~G--------------v~~~~d~~e~~~~~aDvVi 113 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQG--HTVLAHSRSDHS-LAARSLG--------------VSFFLDPHDLCERHPDVIL 113 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHH-HHHHHcC--------------CEEeCCHHHHhhcCCCEEE
Confidence 3579999999999999999999998 899999998543 3333333 23345677744 5699999
Q ss_pred EccchhcHHHHHHHhh-hcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEE
Q 012596 205 HAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 205 laVp~~~~~~vl~~i~-~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~--~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
+|||...+.++++++. +.++++++|+++.+ +- ..+.+.+.+.++.. .+....+.||........+.. ..+
T Consensus 114 LavP~~~~~~vl~~l~~~~l~~g~iVvDv~S-vK----~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~--~~~ 186 (667)
T PLN02712 114 LCTSIISTENVLKSLPLQRLKRNTLFVDVLS-VK----EFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR--FVY 186 (667)
T ss_pred EcCCHHHHHHHHHhhhhhcCCCCeEEEECCC-Cc----HHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc--EEE
Confidence 9999999999999886 67888999999852 22 23344455544321 111223446653222122332 222
Q ss_pred c----cCC---HHHHHHHHHHHhcCCceEEEcCChHHHHHHH
Q 012596 282 A----SKD---RKLANAVQQLLASKHLRISTSSDVTGVEIAG 316 (460)
Q Consensus 282 ~----~~d---~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~k 316 (460)
. +.+ .+.++.+.+++...|.++...+--.+.....
T Consensus 187 ~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A 228 (667)
T PLN02712 187 EKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAA 228 (667)
T ss_pred eeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence 2 222 2456777899999998888765544444333
No 101
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.13 E-value=1.1e-10 Score=117.44 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=106.6
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
+.++.++|+|. |..+++||+.+... +.....++.++++.|.....|.. ......++ ..++|||||.|.+|.
T Consensus 86 ~~gI~v~n~~g-~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~--~~~~~~~l--~gktvgIiG~G~IG~ 160 (314)
T PRK06932 86 ELGIAVKNVTG-YSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCY--FDYPITDV--RGSTLGVFGKGCLGT 160 (314)
T ss_pred hCCCEEEeCCC-CChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccc--cCCccccc--CCCEEEEECCCHHHH
Confidence 56899999998 99999999998844 44455666677777743111110 01111234 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|+++..-| .+|..|++.... .. . . ...+++++++.||+|++++|.+ .++.++ .+
T Consensus 161 ~va~~l~~fg--~~V~~~~~~~~~--~~---~--------------~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 161 EVGRLAQALG--MKVLYAEHKGAS--VC---R--------------E-GYTPFEEVLKQADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred HHHHHHhcCC--CEEEEECCCccc--cc---c--------------c-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHH
Confidence 9999998555 899999875310 00 0 0 0137889999999999999954 567776 34
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++++++|+++.|-..++
T Consensus 219 ~l~~mk~ga~lIN~aRG~~Vde 240 (314)
T PRK06932 219 TLALMKPTAFLINTGRGPLVDE 240 (314)
T ss_pred HHHhCCCCeEEEECCCccccCH
Confidence 6677899999999999977664
No 102
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.13 E-value=1.8e-10 Score=115.68 Aligned_cols=145 Identities=10% Similarity=0.126 Sum_probs=103.4
Q ss_pred CceeecCCCCCCCCCcccccccccc-ccCC---cccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHH
Q 012596 66 DNTIITPYPDDPDPEPVSAVSSEIR-TRDG---RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTA 141 (460)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~ 141 (460)
.++.+++.|+++...++||+.+... ...| ..++.++.+.|.. . ...++ ..++|||||+|+||..
T Consensus 83 ~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~------~----~~~~l--~g~tvgIvG~G~IG~~ 150 (312)
T PRK15469 83 PSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQP------L----PEYHR--EDFTIGILGAGVLGSK 150 (312)
T ss_pred CCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCC------C----CCCCc--CCCEEEEECCCHHHHH
Confidence 4677888887677889999998855 3333 3344455555522 1 11123 3589999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-Hh
Q 012596 142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GI 219 (460)
Q Consensus 142 ~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~i 219 (460)
+|++|..-| ++|++|++.++... +.. ......++++++++||+|++++|.+ .+..++. +.
T Consensus 151 vA~~l~afG--~~V~~~~~~~~~~~-----~~~-----------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~ 212 (312)
T PRK15469 151 VAQSLQTWG--FPLRCWSRSRKSWP-----GVQ-----------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQL 212 (312)
T ss_pred HHHHHHHCC--CEEEEEeCCCCCCC-----Cce-----------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence 999999877 99999998753211 100 0011237889999999999999964 5777774 46
Q ss_pred hhcCCCCCeEEEeccCCccch
Q 012596 220 SDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 220 ~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
...+++++++|++..|-..++
T Consensus 213 l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred HhcCCCCcEEEECCCccccCH
Confidence 777899999999999977664
No 103
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.13 E-value=1.8e-10 Score=116.01 Aligned_cols=149 Identities=12% Similarity=0.143 Sum_probs=108.2
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
.+.++.++|.|. |..+++||+..... +.....++.++.+.|...-.+. .......++ ..++|||||+|++|
T Consensus 86 ~~~gI~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~--~~~~~~~~l--~gktvgIiG~G~IG 160 (317)
T PRK06487 86 RERGITVCNCQG-YGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFC--LLDFPIVEL--EGKTLGLLGHGELG 160 (317)
T ss_pred HHCCCEEEeCCC-CCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccc--cccCccccc--CCCEEEEECCCHHH
Confidence 356899999999 99999999998854 5555666777777774311000 001112234 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch-hcHHHHHH-
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE- 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~~~~vl~- 217 (460)
..+|++|..-| .+|.+|+|.... .. .. ..+++++++.||+|++++|. ..++.++.
T Consensus 161 ~~vA~~l~~fg--m~V~~~~~~~~~------~~--------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~ 217 (317)
T PRK06487 161 GAVARLAEAFG--MRVLIGQLPGRP------AR--------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGA 217 (317)
T ss_pred HHHHHHHhhCC--CEEEEECCCCCc------cc--------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCH
Confidence 99999998555 899999986310 00 01 12688999999999999995 45777763
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 218 ~~~~~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDE 240 (317)
T ss_pred HHHhcCCCCeEEEECCCccccCH
Confidence 46677899999999999977664
No 104
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.12 E-value=9.6e-10 Score=101.83 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=101.3
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC----CccCCCCC------CCCceEEeCCHHhhcC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN----CRYFPEQK------LPENVIATTDAKTALL 198 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~----~~~~~~~~------l~~~i~a~~~~~ea~~ 198 (460)
||+|||+|.||..+|..++.+| ++|++||++++.++...+.-.. ........ ...++..++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 7999999999999999999999 9999999999865443221000 00000110 124678889999876
Q ss_pred CCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHhccC
Q 012596 199 GADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELMNKL 275 (460)
Q Consensus 199 ~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~~g~ 275 (460)
+||+||-++|.. .-.+++.++.+.+++++++.+.+.++.... +.+.+..+. .-..-+..|.+...+
T Consensus 78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~-------la~~~~~p~R~ig~Hf~~P~~~~~l---- 146 (180)
T PF02737_consen 78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE-------LAAALSRPERFIGMHFFNPPHLMPL---- 146 (180)
T ss_dssp TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH-------HHTTSSTGGGEEEEEE-SSTTT--E----
T ss_pred hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH-------HHhccCcCceEEEEecccccccCce----
Confidence 999999999964 356789999999999999998887777642 233232211 111233445543211
Q ss_pred CeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 012596 276 PTAMVVA-SKDRKLANAVQQLLASKHLRISTSSD 308 (460)
Q Consensus 276 ~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~D 308 (460)
.-++.+ ..+.+.++.+..++...|.......|
T Consensus 147 -VEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 147 -VEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp -EEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred -EEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 122223 24678899999999999888766554
No 105
>PLN02712 arogenate dehydrogenase
Probab=99.12 E-value=2.2e-09 Score=117.93 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=104.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVi 204 (460)
+.|||+|||+|.||..+|..|.+.| ++|++|+|+.+. +...+.| +...++.++++. .+|+||
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G--~~V~~~dr~~~~-~~a~~~G--------------v~~~~~~~el~~~~aDvVI 430 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG--HTVLAYSRSDYS-DEAQKLG--------------VSYFSDADDLCEEHPEVIL 430 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc--CEEEEEECChHH-HHHHHcC--------------CeEeCCHHHHHhcCCCEEE
Confidence 3589999999999999999999988 899999998643 3333333 223457777665 589999
Q ss_pred EccchhcHHHHHHHhhh-cCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHh-cc---CCe--
Q 012596 205 HAMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELM-NK---LPT-- 277 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~-~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~-~g---~~~-- 277 (460)
+|||...+.++++++.. .+++++++++++.+-. ...+.+.+.++.. .. .+..-|.++.+.. .| .+.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-----~~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf 503 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-----FPRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVF 503 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-----HHHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhc
Confidence 99999999999988865 6788999999865321 2223444444321 11 1212333322211 11 110
Q ss_pred -EEEEccC--CHHHHHHHHHHHhcCCceEEEcCChHHHH
Q 012596 278 -AMVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVE 313 (460)
Q Consensus 278 -~i~i~~~--d~~~~~~l~~lL~~~g~~v~~~~Di~g~~ 313 (460)
...+++. ..+.++.+.+++...|.+++..+--.++.
T Consensus 504 ~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~ 542 (667)
T PLN02712 504 DKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDW 542 (667)
T ss_pred cCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHH
Confidence 0112221 23456677799999998887765444443
No 106
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.11 E-value=1.9e-09 Score=104.71 Aligned_cols=191 Identities=17% Similarity=0.191 Sum_probs=126.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------CCCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~------l~~~i~a~~~~~ea~~~a 200 (460)
|+||+.||+|.+|++....++-.-.+.+|+++|.+..++.+++...+ +.|.|+++ -.+++.+.+|.+.++.++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~l-piyepgldevv~~crgknlffstdiekai~ea 79 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKL-PIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCC-cccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence 47999999999999988888755444689999999888888776542 56777763 246778889999999999
Q ss_pred cEEEEccchh---------------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECc
Q 012596 201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP 265 (460)
Q Consensus 201 DiVilaVp~~---------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP 265 (460)
|+||++|... .++++...|.+.....++++--++ +...+.+.+..++... .....+.+++.|
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv~aaesi~~il~~n--~~~i~fqilsnp 156 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPVKAAESIEKILNHN--SKGIKFQILSNP 156 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccchHHHHHHHHHhcC--CCCceeEeccCh
Confidence 9999987431 355666667776665666665443 4444333333344211 123457789999
Q ss_pred ccHHHHh----ccCCeEEEEccCCH----HHHHHHHHHHhcC-CceEEEcCChHHHHHHHHHHHH
Q 012596 266 SFALELM----NKLPTAMVVASKDR----KLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNV 321 (460)
Q Consensus 266 ~~a~e~~----~g~~~~i~i~~~d~----~~~~~l~~lL~~~-g~~v~~~~Di~g~~~~kalkNv 321 (460)
.+..|.. .-++..+.+||.+. .+++.+..++... ...-..+.+.+..+..|+..|.
T Consensus 157 eflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 157 EFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred HHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 9876532 12455677887542 4566667777653 2223445566777777766654
No 107
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.08 E-value=4e-10 Score=112.58 Aligned_cols=149 Identities=10% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
++..++++.+. ++ .++||+.+... +.....++.++.+.|.. . ...++ ..++|||||+|+||.
T Consensus 70 ~~~i~~~~~g~-~~-~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~------~----~~~~L--~gktvgIiG~G~IG~ 135 (303)
T PRK06436 70 ENVVLCSNAGA-YS-ISVAEHAFALLLAWAKNICENNYNMKNGNFKQ------S----PTKLL--YNKSLGILGYGGIGR 135 (303)
T ss_pred hCCeEEEcCCC-Cc-HHHHHHHHHHHHHHHcChHHHHHHHHcCCCCC------C----CCCCC--CCCEEEEECcCHHHH
Confidence 34566666543 54 69999999855 44555666666666632 1 12234 468999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH-HH
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EG 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl-~~ 218 (460)
.+|++|..-| ++|++|+|+... .+.. ....+++++++.||+|++++|.+ .++.++ .+
T Consensus 136 ~vA~~l~afG--~~V~~~~r~~~~------~~~~-------------~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~ 194 (303)
T PRK06436 136 RVALLAKAFG--MNIYAYTRSYVN------DGIS-------------SIYMEPEDIMKKSDFVLISLPLTDETRGMINSK 194 (303)
T ss_pred HHHHHHHHCC--CEEEEECCCCcc------cCcc-------------cccCCHHHHHhhCCEEEECCCCCchhhcCcCHH
Confidence 9999887667 999999987421 1110 11247889999999999999964 467766 34
Q ss_pred hhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
....+++++++|+++.|-..++ ..+.+.+.
T Consensus 195 ~l~~mk~ga~lIN~sRG~~vd~-~aL~~aL~ 224 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVVDK-NDMLNFLR 224 (303)
T ss_pred HHhcCCCCeEEEECCCccccCH-HHHHHHHH
Confidence 6677899999999999876654 23334443
No 108
>PLN02928 oxidoreductase family protein
Probab=99.04 E-value=8.1e-10 Score=112.54 Aligned_cols=158 Identities=10% Similarity=0.111 Sum_probs=104.1
Q ss_pred CCceeecCCCCCC---CCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcch
Q 012596 65 NDNTIITPYPDDP---DPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGS 137 (460)
Q Consensus 65 ~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~ 137 (460)
+.++.++|+|+ | ...++||..+... +.....++.++.+.| ... .+.++ ..++|||||+|.
T Consensus 103 ~~gi~v~n~~~-~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w------~~~----~~~~l--~gktvGIiG~G~ 169 (347)
T PLN02928 103 KHGIKVARIPS-EGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL------GEP----IGDTL--FGKTVFILGYGA 169 (347)
T ss_pred hCCCEEEECCC-CCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCc------ccc----cccCC--CCCEEEEECCCH
Confidence 56899999998 6 4689999998854 333344454554444 221 12234 368999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL 216 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl 216 (460)
||..+|++|..-| .+|++|+|+...... ...+........ +........+++++++.||+|++++|.+ .+..++
T Consensus 170 IG~~vA~~l~afG--~~V~~~dr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li 244 (347)
T PLN02928 170 IGIELAKRLRPFG--VKLLATRRSWTSEPE-DGLLIPNGDVDD--LVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIV 244 (347)
T ss_pred HHHHHHHHHhhCC--CEEEEECCCCChhhh-hhhccccccccc--cccccCcccCHHHHHhhCCEEEECCCCChHhhccc
Confidence 9999999999777 899999987321111 000000000000 0000001247889999999999999954 466666
Q ss_pred -HHhhhcCCCCCeEEEeccCCccch
Q 012596 217 -EGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 217 -~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
.+....+++++++|+++.|-..++
T Consensus 245 ~~~~l~~Mk~ga~lINvaRG~lVde 269 (347)
T PLN02928 245 NDEFLSSMKKGALLVNIARGGLLDY 269 (347)
T ss_pred CHHHHhcCCCCeEEEECCCccccCH
Confidence 456777899999999999876654
No 109
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.03 E-value=7.4e-09 Score=105.90 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=103.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||+ |.||+.+|..|.+.. +++|+.||+..+ ...++++++++||+||
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi 56 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP-------------------------GSLDPATLLQRADVLI 56 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence 3579999999 999999999999752 389999998521 1125667789999999
Q ss_pred EccchhcHHHHHHHhhhc---CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 205 HAMPVQFSSSFLEGISDY---VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~---l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
+|||...+.++++++.++ ++++++|.++.. += ..+.+.+.+. +...+....+.||.... ...+... ++.
T Consensus 57 lavPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-vK----~~i~~~~~~~-~~~fVG~HPMaG~E~s~-lf~g~~~-ilt 128 (370)
T PRK08818 57 FSAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-IK----QAPVAAMLAS-QAEVVGLHPMTAPPKSP-TLKGRVM-VVC 128 (370)
T ss_pred EeCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-Cc----HHHHHHHHhc-CCCEEeeCCCCCCCCCc-ccCCCeE-EEe
Confidence 999999999999999876 789999988763 11 1122222221 11111222344554321 2344433 222
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHH
Q 012596 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA 317 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ka 317 (460)
.....+..+.++++++..|.++...+--.++.....
T Consensus 129 p~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~ 164 (370)
T PRK08818 129 EARLQHWSPWVQSLCSALQAECVYATPEHHDRVMAL 164 (370)
T ss_pred CCCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHH
Confidence 233445578899999999988887665555544433
No 110
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.98 E-value=5.6e-08 Score=94.46 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 153 LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 153 ~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
++|++|+|++++++.+.+.. ++.++++..++++++|+||+|||++.+.++++++.+.+.++++||++
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~ 76 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISI 76 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEe
Confidence 78999999998888776541 13455677787889999999999999999999998877778899999
Q ss_pred ccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCCh
Q 012596 233 SKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDV 309 (460)
Q Consensus 233 ~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di 309 (460)
..|+..+ .+.+.++.. ...+...|+.+..+..|. +.+..+. .+.+..+.++++|+..|..+...++.
T Consensus 77 ~agi~~~-------~l~~~~~~~--~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~ 144 (245)
T TIGR00112 77 AAGVTLE-------KLSQLLGGT--RRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVELPEAL 144 (245)
T ss_pred cCCCCHH-------HHHHHcCCC--CeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 9999875 355566531 135788999887776553 3333332 34567789999999999888776553
No 111
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.97 E-value=1.8e-09 Score=107.80 Aligned_cols=159 Identities=14% Similarity=0.259 Sum_probs=118.4
Q ss_pred CCCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHH
Q 012596 64 NNDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFG 139 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG 139 (460)
++..+.++|+|+ -.-.++||.++... +...+.+|.++.+.| . |..-|.. +... ..++|+|+|+|++|
T Consensus 104 ~krgI~V~nvp~-~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~---~~~~~~~--g~~~--~gK~vgilG~G~IG 174 (336)
T KOG0069|consen 104 RKRGIRVANVPD-VLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-G---WAGGWPL--GYDL--EGKTVGILGLGRIG 174 (336)
T ss_pred HhcCceEeccCC-cchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-c---ccCCccc--cccc--cCCEEEEecCcHHH
Confidence 567789999999 78889999988733 888899999999988 2 3333332 2223 35899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-
Q 012596 140 TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE- 217 (460)
Q Consensus 140 ~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~- 217 (460)
..+|.+|..-| ..+..+.|++...+...+.+.. ..|.++.+..+|+|++++|.+ .+.++++
T Consensus 175 ~~ia~rL~~Fg--~~i~y~~r~~~~~~~~~~~~~~---------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk 237 (336)
T KOG0069|consen 175 KAIAKRLKPFG--CVILYHSRTQLPPEEAYEYYAE---------------FVDIEELLANSDVIVVNCPLTKETRHLINK 237 (336)
T ss_pred HHHHHhhhhcc--ceeeeecccCCchhhHHHhccc---------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhH
Confidence 99999999865 6777778876544444333211 126778889999999999965 5788875
Q ss_pred HhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 218 GISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
++...++++.+||++..|-..+. +.+.+.+.
T Consensus 238 ~~~~~mk~g~vlVN~aRG~iide-~~l~eaL~ 268 (336)
T KOG0069|consen 238 KFIEKMKDGAVLVNTARGAIIDE-EALVEALK 268 (336)
T ss_pred HHHHhcCCCeEEEeccccccccH-HHHHHHHh
Confidence 57888999999999999876653 23344443
No 112
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.93 E-value=2.6e-09 Score=109.73 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=97.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA 143 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A 143 (460)
+.++.|+|.|. +...++||+..... ...|+ .+.++ ..++|||||+|+||..+|
T Consensus 79 ~~gI~v~napg-~na~aVAE~v~~~lL~l~r~-----------------------~g~~l--~gktvGIIG~G~IG~~va 132 (381)
T PRK00257 79 EAGITWSSAPG-CNARGVVDYVLGSLLTLAER-----------------------EGVDL--AERTYGVVGAGHVGGRLV 132 (381)
T ss_pred HCCCEEEECCC-cChHHHHHHHHHHHHHHhcc-----------------------cCCCc--CcCEEEEECCCHHHHHHH
Confidence 56899999998 99999999988744 22221 01123 368999999999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-----cHHHHH-H
Q 012596 144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-----FSSSFL-E 217 (460)
Q Consensus 144 ~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-----~~~~vl-~ 217 (460)
.+|..-| ++|.+||+..... .+ .. ...++++++++||+|++++|.+ .+..++ +
T Consensus 133 ~~l~a~G--~~V~~~Dp~~~~~-----~~-------------~~-~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~ 191 (381)
T PRK00257 133 RVLRGLG--WKVLVCDPPRQEA-----EG-------------DG-DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE 191 (381)
T ss_pred HHHHHCC--CEEEEECCccccc-----cc-------------Cc-cccCHHHHHhhCCEEEEeCcCCCCccccccccCCH
Confidence 9999888 9999999754211 01 01 1237889899999999999964 366666 3
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 192 ~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 192 AFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred HHHhcCCCCeEEEECCCCcccCH
Confidence 46677899999999999877664
No 113
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.93 E-value=2.5e-09 Score=109.56 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=97.1
Q ss_pred CCceeecCCCCCCCCCcccccccccc-ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHHHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR-TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA 143 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A 143 (460)
+.++.|+|.|. +...++||+..... ...|+ . +.++ ..++|||||+|+||+.+|
T Consensus 79 ~~gI~v~napg-~na~aVAE~~~~~lL~l~r~-------~----------------g~~L--~gktvGIIG~G~IG~~vA 132 (378)
T PRK15438 79 QAGIGFSAAPG-CNAIAVVEYVFSSLLMLAER-------D----------------GFSL--HDRTVGIVGVGNVGRRLQ 132 (378)
T ss_pred HCCCEEEECCC-cCchHHHHHHHHHHHHHhcc-------C----------------CCCc--CCCEEEEECcCHHHHHHH
Confidence 56899999998 99999999998744 22221 0 0123 468999999999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhc-----HHHHH-H
Q 012596 144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-----SSSFL-E 217 (460)
Q Consensus 144 ~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-----~~~vl-~ 217 (460)
++|..-| .+|.+||+.... .+. . ....+++++++.||+|++++|.+. +..++ +
T Consensus 133 ~~l~a~G--~~V~~~dp~~~~------~~~------------~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~ 191 (378)
T PRK15438 133 ARLEALG--IKTLLCDPPRAD------RGD------------E-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE 191 (378)
T ss_pred HHHHHCC--CEEEEECCcccc------ccc------------c-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH
Confidence 9999877 999999975321 010 0 012378999999999999999543 56666 4
Q ss_pred HhhhcCCCCCeEEEeccCCccch
Q 012596 218 GISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 218 ~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+....+++++++|+++.|-..++
T Consensus 192 ~~l~~mk~gailIN~aRG~vVDe 214 (378)
T PRK15438 192 KLIRSLKPGAILINACRGAVVDN 214 (378)
T ss_pred HHHhcCCCCcEEEECCCchhcCH
Confidence 56777899999999999977664
No 114
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.90 E-value=1.8e-08 Score=100.06 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=107.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC----CCccCCCC---CCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC----NCRYFPEQ---KLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~---g~----~~~~~~~~---~l~~~i~a~~~~~e 195 (460)
..+||+|||+|.||+.+|..++.+| ++|+++|++++.+++.... .+ ....+.+. ..-..+..++++.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G--~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~- 78 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAG--YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA- 78 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcC--CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-
Confidence 4689999999999999999999988 9999999997754332211 00 00001110 1123455556665
Q ss_pred hcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC-CCCEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~-~~~~~v~~gP~~a~e~~ 272 (460)
++++||+||-+++.. . -.+++.++-.++++++++-+-+.++.+.. +.+....+ .........|.....+
T Consensus 79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~-------ia~~~~rper~iG~HFfNP~~~m~L- 150 (307)
T COG1250 79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE-------LAEALKRPERFIGLHFFNPVPLMPL- 150 (307)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH-------HHHHhCCchhEEEEeccCCCCccee-
Confidence 579999999999964 3 46788999999999999888877777642 22222211 0111123444433211
Q ss_pred ccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 273 ~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
.-++-+. .+.+.++++.++..+.|..+....|..|
T Consensus 151 ----VEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG 186 (307)
T COG1250 151 ----VEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG 186 (307)
T ss_pred ----EEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc
Confidence 1111221 3578899999999988854455455443
No 115
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.90 E-value=3.9e-09 Score=109.04 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=128.7
Q ss_pred CeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-CccCCCC---CCCCceEEeC--CHHh---hc
Q 012596 128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYFPEQ---KLPENVIATT--DAKT---AL 197 (460)
Q Consensus 128 ~kI~IIGaG~mG~-~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~-~~~~~~~---~l~~~i~a~~--~~~e---a~ 197 (460)
|||.++|+|+||+ .++..|.++| ++|+++++++.++++++++|.- ....+.. ..-.++.... +.++ .+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~ 78 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAI 78 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHh
Confidence 7899999999998 5588999988 9999999999999999998741 1111111 1111233331 2222 34
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCC--------CeEEEeccCCccchhhhHHHHHHHHh------------CCCCC
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPG--------LPFISLSKGLELNTLRMMSQIIPQAL------------RNPRQ 257 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~--------~iIV~~~~Gi~~~~~~~l~e~l~~~l------------g~~~~ 257 (460)
.++|+|+++|+....+.+...|.+.+.+. -.|++|.||..+.. .+.+.+.+.. +-. .
T Consensus 79 ~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~--~L~~~V~~~~~~~~~~wi~~~~~f~-~ 155 (381)
T PRK02318 79 AEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTS--FLKKHVLKALSEDEKAWLEEHVGFV-D 155 (381)
T ss_pred cCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHH--HHHHHHHHhCCHHHHHHHHhcCCCC-C
Confidence 58899999999888777776665544332 37899999998753 3333332211 100 0
Q ss_pred CEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCC-----ceEEEcCChHHHHHHHHHHHH-HHH---HHHH
Q 012596 258 PFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKH-----LRISTSSDVTGVEIAGALKNV-LAI---AAGI 328 (460)
Q Consensus 258 ~~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g-----~~v~~~~Di~g~~~~kalkNv-~ai---~~g~ 328 (460)
..+-..+|.... .+ .. .+.. +...+.+.+-++..+ ..+.+++|+...+|.|+..|. .+. ..|.
T Consensus 156 t~VDrI~P~~~~---~d-~~--~v~~--E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~ 227 (381)
T PRK02318 156 SAVDRIVPAQKN---ED-PL--DVTV--EPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGY 227 (381)
T ss_pred cHHhcCCCCCCc---cC-Cc--cccc--ccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHH
Confidence 111223341100 00 00 0000 000011111111111 257888999999999998653 222 2344
Q ss_pred Hhccc-----CCCcHHHHHHHHHHHHHHHHHH-HcCCCccc
Q 012596 329 VVGMN-----LGNNSMAALVAQGCSEIRWLAT-KMGAKPAT 363 (460)
Q Consensus 329 ~~~~k-----l~~n~~~al~~~~~~E~~~la~-a~Gi~~~~ 363 (460)
..|.+ +.+.....++...+.|+..++. +.|++++.
T Consensus 228 l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~g~~~~~ 268 (381)
T PRK02318 228 LKGYKTIREAILDPSIRAVVKGALEESGAVLIKKYGFDKEE 268 (381)
T ss_pred HcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcCCcCHHH
Confidence 33332 3355667889999999999995 56886543
No 116
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.89 E-value=2.9e-08 Score=110.09 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=111.2
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCCC---CCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPEQ---KLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La-~~G~~~~V~v~~r~~~~~~~l~~~g-------~~~~~~~~~---~l~~~i~a~~~~~e 195 (460)
.+||+|||+|.||..+|..++ .+| ++|+++|.+++.+++..+.- .....+... ....++..+++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 380 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAG--IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR- 380 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence 468999999999999999998 589 99999999987654432110 000000000 1124577888885
Q ss_pred hcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~ 272 (460)
++++||+||-++|.. . -.+++.++.+++++++++.+-+.++.... +.+.+..+. .-......|.+...
T Consensus 381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~-------la~~~~~p~r~~g~HffnP~~~~~-- 451 (699)
T TIGR02440 381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ-------IAAAASRPENVIGLHYFSPVEKMP-- 451 (699)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH-------HHHhcCCcccEEEEecCCccccCc--
Confidence 579999999999964 3 46788999999999999988877777642 233222211 11112223332211
Q ss_pred ccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 273 ~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+ ..+++.++.+..++...|...+...|..|.
T Consensus 452 ---lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGf 489 (699)
T TIGR02440 452 ---LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGF 489 (699)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccch
Confidence 1112222 235788999999999999887777786654
No 117
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.89 E-value=7.9e-09 Score=95.50 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|||||+|.+|..+|.+|..-| .+|++|+|...........+ + ...+++++++.||+|++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~~--------------~-~~~~l~ell~~aDiv~~ 97 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEFG--------------V-EYVSLDELLAQADIVSL 97 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTT--------------E-EESSHHHHHHH-SEEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccccc--------------c-eeeehhhhcchhhhhhh
Confidence 3689999999999999999999777 99999999986554333322 2 23488999999999999
Q ss_pred ccchh-cHHHHH-HHhhhcCCCCCeEEEeccCCccch
Q 012596 206 AMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 206 aVp~~-~~~~vl-~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
++|.+ .+..++ .+....+++++++|+++.|-..+.
T Consensus 98 ~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde 134 (178)
T PF02826_consen 98 HLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDE 134 (178)
T ss_dssp -SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-H
T ss_pred hhccccccceeeeeeeeeccccceEEEeccchhhhhh
Confidence 99954 455555 345677889999999999866653
No 118
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=98.88 E-value=1e-08 Score=88.96 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccC----CCcHHHHHHHHHHHHHHHHHHHcCCCccc--cccccCCCceeeecccCC
Q 012596 308 DVTGVEIAGALKNVLAIAAGIVVGMNL----GNNSMAALVAQGCSEIRWLATKMGAKPAT--ITGLSGTGDIMLTCFVNL 381 (460)
Q Consensus 308 Di~g~~~~kalkNv~ai~~g~~~~~kl----~~n~~~al~~~~~~E~~~la~a~Gi~~~~--~~~~~~~gd~~~t~~s~~ 381 (460)
||.+..|.|++.|....+.+...+..+ .+.....++...+.|+.+++++.|+..+. +.+. ....+....
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~-----~~~~~~~~~ 75 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEA-----IERLIRSTP 75 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHH-----HHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH-----HHHHHHhcC
Confidence 678889999999976555444444433 34556789999999999999999976432 2211 000011111
Q ss_pred CccchHHHHhhCCCChHHHHhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHhc
Q 012596 382 SRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN 440 (460)
Q Consensus 382 srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~~ 440 (460)
....++-+|+.+|+++| .....|+++++|+++|+++|+++.+|++++.
T Consensus 76 ~~~~SM~~D~~~gr~tE-----------id~i~G~vv~~a~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 76 DNRSSMLQDIEAGRPTE-----------IDYINGYVVRLAKKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp TT--HHHHHHHTTB--S-----------HHHTHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred CccccHHHHHHHccccc-----------HHHHHHHHHHHHHHHCCCCcHHHHHHHHHHH
Confidence 12235678888887764 3467899999999999999999999999874
No 119
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.88 E-value=3.9e-08 Score=109.30 Aligned_cols=171 Identities=14% Similarity=0.146 Sum_probs=112.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea 196 (460)
..||+|||+|.||..+|..++.+| ++|+++|++++.+++..+. ......+... ....+++.+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG- 389 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 468999999999999999999999 9999999998865432111 0000001110 11246788888854
Q ss_pred cCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHhc
Q 012596 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELMN 273 (460)
Q Consensus 197 ~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~~ 273 (460)
+++||+||-+++.. .-.+++.++.++++++++|.+-+.++.... +.+.+..+. .-...+..|.+...
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~-------la~~~~~p~r~~g~Hff~P~~~~~--- 459 (715)
T PRK11730 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL-------LAKALKRPENFCGMHFFNPVHRMP--- 459 (715)
T ss_pred hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCCccEEEEecCCcccccc---
Confidence 79999999999964 346788999999999999888777776542 333333211 11112334432221
Q ss_pred cCCeEEEEcc-CCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 274 g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+. .+++.++.+..++...|...+...|..|.
T Consensus 460 --lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 460 --LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred --eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 11122222 36788999999999988777776776654
No 120
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=7e-08 Score=95.37 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=133.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiV 203 (460)
.+.||.||++.||..++.+.++.| +.|.+|+|+..+++.+.++..+ +.+ +--..++++. ++....|
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~G--f~v~~yNRT~skvD~flaneak-----~~~----i~ga~S~ed~v~klk~PR~i 74 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKG--FTVCAYNRTTSKVDEFLANEAK-----GTK----IIGAYSLEDFVSKLKKPRVI 74 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccC--ceEEEeccchHhHHHHHHHhhc-----CCc----ccCCCCHHHHHHhcCCCcEE
Confidence 378999999999999999999999 9999999999999887665322 111 1122355554 4678999
Q ss_pred EEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEE-ECcccHHHHhccCCeEEEE
Q 012596 204 LHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 204 ilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~-~gP~~a~e~~~g~~~~i~i 281 (460)
++.||+. .++.++++|.+++.+|.+||+-.|.-.++|.+...+..+. | +-++ .|..-++|.+.-.|. .+
T Consensus 75 illvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~--G-----ilfvG~GVSGGEEGAR~GPS--lM 145 (487)
T KOG2653|consen 75 ILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKK--G-----ILFVGSGVSGGEEGARYGPS--LM 145 (487)
T ss_pred EEEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhc--C-----cEEEecCccCcccccccCCc--cC
Confidence 9999975 5888999999999999999998887777765554443322 3 1222 233323333333343 34
Q ss_pred ccCCHHHHHHHHHHHhcC-------CceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Q 012596 282 ASKDRKLANAVQQLLASK-------HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~-------g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~~~la 354 (460)
-|++.++...++++|... .-.+.+.++- |. +-.+| -.-++..||+ .+.+.|++.+.
T Consensus 146 pGg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~-Ga--GhfVK-------MVHNGIEYGD-------MqLI~EaY~vl 208 (487)
T KOG2653|consen 146 PGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEG-GA--GHFVK-------MVHNGIEYGD-------MQLICEAYDVL 208 (487)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCC-CC--ccchh-------hhccCcccch-------HHHHHHHHHHH
Confidence 556788888899888742 2223333331 00 00001 0113444554 46889999999
Q ss_pred HH-cCCCcccccc
Q 012596 355 TK-MGAKPATITG 366 (460)
Q Consensus 355 ~a-~Gi~~~~~~~ 366 (460)
+. .|+.-+.+.+
T Consensus 209 k~~~gls~~eia~ 221 (487)
T KOG2653|consen 209 KSVLGLSNDEIAE 221 (487)
T ss_pred HHhcCCcHHHHHH
Confidence 98 7777655544
No 121
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.87 E-value=5.1e-08 Score=108.24 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=112.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea 196 (460)
.+||+|||+|.||..+|..++.+| ++|+++|++++.+++..+. ......+... ....++..+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG- 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 578999999999999999999999 9999999999866543211 0000000000 11235777788854
Q ss_pred cCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHhc
Q 012596 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELMN 273 (460)
Q Consensus 197 ~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~~ 273 (460)
+++||+||-+|+.. .-.+++.++.+.+++++++.+-+.++.... +.+.+..+. .-......|.+...
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~-------ia~~~~~p~r~ig~Hff~P~~~~~--- 459 (714)
T TIGR02437 390 FDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISL-------LAKALKRPENFCGMHFFNPVHRMP--- 459 (714)
T ss_pred hcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCcccEEEEecCCCcccCc---
Confidence 79999999999964 346789999999999999988777776642 233332211 11112233433221
Q ss_pred cCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 274 KLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 274 g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+ ..+++.++.+.+++...|.......|..|.
T Consensus 460 --lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 460 --LVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred --eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 1111222 235788999999999998887777776553
No 122
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.87 E-value=3.5e-08 Score=109.65 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=111.4
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCC---CCCCCceEEeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPE---QKLPENVIATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La-~~G~~~~V~v~~r~~~~~~~l~~~-------g~~~~~~~~---~~l~~~i~a~~~~~e 195 (460)
.+||+|||+|.||..+|..++ .+| ++|+++|++++.+++..+. ......+.. .....++..+++.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR- 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence 478999999999999999999 888 9999999998755432211 000000000 01124678888885
Q ss_pred hcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC-CCEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~-~~~~v~~gP~~a~e~~ 272 (460)
++++||+||-+++.. .-.+++.++.+++++++++.+-+.++.... +.+.+..+. .-...+..|.+...
T Consensus 386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~-------la~~~~~p~r~ig~Hff~P~~~~~-- 456 (708)
T PRK11154 386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ-------IAAAAARPEQVIGLHYFSPVEKMP-- 456 (708)
T ss_pred HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHHhcCcccceEEEecCCccccCc--
Confidence 579999999999964 346789999999999999988887777642 233222211 11112234433221
Q ss_pred ccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHH
Q 012596 273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (460)
Q Consensus 273 ~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~ 312 (460)
..-++.+ ..+++.++.+..++...|.......|..|.
T Consensus 457 ---lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGf 494 (708)
T PRK11154 457 ---LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGF 494 (708)
T ss_pred ---eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcH
Confidence 1122222 236788999999999888776666675543
No 123
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.83 E-value=2.2e-08 Score=99.61 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|+|||+|+||.++|.+|.+.| ++|++|+|.....+.....|. .. .+++++++.||+|++
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G--~~ViV~~r~~~s~~~A~~~G~--------------~v-~sl~Eaak~ADVV~l 77 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSG--VEVVVGVRPGKSFEVAKADGF--------------EV-MSVSEAVRTAQVVQM 77 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCc--CEEEEEECcchhhHHHHHcCC--------------EE-CCHHHHHhcCCEEEE
Confidence 4589999999999999999999999 999999876433333333332 22 278899999999999
Q ss_pred ccchhcHHHHH-HHhhhcCCCCCeEEEeccCCccc
Q 012596 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 206 aVp~~~~~~vl-~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
++|.....+++ +++.+.++++++++ .+-|+...
T Consensus 78 lLPd~~t~~V~~~eil~~MK~GaiL~-f~hgfni~ 111 (335)
T PRK13403 78 LLPDEQQAHVYKAEVEENLREGQMLL-FSHGFNIH 111 (335)
T ss_pred eCCChHHHHHHHHHHHhcCCCCCEEE-ECCCccee
Confidence 99986667777 46889999887554 55677653
No 124
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.81 E-value=5.7e-08 Score=108.15 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=112.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCCC---CCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPEQ---KLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g-------~~~~~~~~~---~l~~~i~a~~~~~e 195 (460)
...+|+|||+|.||..+|..++.+| ++|+++|++++.+++..+.- .....+... .....+..++|.+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 410 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKG--LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS- 410 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCC--CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence 3578999999999999999999999 99999999998765432210 000000000 1124677788886
Q ss_pred hcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-CEEEEECcccHHHHh
Q 012596 196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PFIALSGPSFALELM 272 (460)
Q Consensus 196 a~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-~~~v~~gP~~a~e~~ 272 (460)
++++||+||-+|+.. . -.+++.++.+++++++++.+-+.++... .+.+.+..+.. -......|.+...
T Consensus 411 ~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p~r~ig~Hff~P~~~m~-- 481 (737)
T TIGR02441 411 GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK-------DIAAVSSRPEKVIGMHYFSPVDKMQ-- 481 (737)
T ss_pred HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCccceEEEeccCCcccCc--
Confidence 479999999999964 3 4678999999999999998877777664 23333332111 1112233433221
Q ss_pred ccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 273 ~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
..-++.+ ..+.+.++.+..++...|...+...|..|
T Consensus 482 ---LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 518 (737)
T TIGR02441 482 ---LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG 518 (737)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence 1112222 23578899999999998888777777655
No 125
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.79 E-value=2.7e-08 Score=89.27 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=70.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|+|||.|..|.+.|.+|.+.| .+|++..|... ..++..+.|.. + .+.+|+++.+|+|+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG--~~V~Vglr~~s~s~~~A~~~Gf~--------------v-~~~~eAv~~aDvV~ 65 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSG--VNVIVGLREGSASWEKAKADGFE--------------V-MSVAEAVKKADVVM 65 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT-E--------------C-CEHHHHHHC-SEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC--CCEEEEecCCCcCHHHHHHCCCe--------------e-ccHHHHHhhCCEEE
Confidence 4589999999999999999999999 89999988876 56666666642 1 26788999999999
Q ss_pred EccchhcHHHHH-HHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPVQFSSSFL-EGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~~~~~~vl-~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+.+|+....+++ ++|.+.+++|+.++- +-|+.
T Consensus 66 ~L~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGfn 98 (165)
T PF07991_consen 66 LLLPDEVQPEVYEEEIAPNLKPGATLVF-AHGFN 98 (165)
T ss_dssp E-S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSHH
T ss_pred EeCChHHHHHHHHHHHHhhCCCCCEEEe-CCcch
Confidence 999999999988 789999999987664 44554
No 126
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=1.4e-07 Score=94.99 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHH-------HHH----H-------HhhcCCCccCCCC---CCCCceEEeCC--HH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAV-------CQS----I-------NEKHCNCRYFPEQ---KLPENVIATTD--AK 194 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~-------~~~----l-------~~~g~~~~~~~~~---~l~~~i~a~~~--~~ 194 (460)
||..+|..++.+| ++|++||++++. +++ + .+.|. +... ....++..+++ +.
T Consensus 1 MG~giA~~~a~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~----~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFAG--HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGR----IDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhCC--CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCC----CChhhHHHHHhCeEeecCcchH
Confidence 7999999999999 999999999842 111 1 11111 1000 11235666544 66
Q ss_pred hhcCCCcEEEEccchh-cH-HHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHH
Q 012596 195 TALLGADYCLHAMPVQ-FS-SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALEL 271 (460)
Q Consensus 195 ea~~~aDiVilaVp~~-~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~-~~v~~gP~~a~e~ 271 (460)
+++++||+||.||+.. .+ ..++.++.+.+++++++.+.+.++... .+.+.+..+... ......|.+...
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~-------~la~~~~~p~r~~g~Hf~~Pp~~~~- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVT-------DLQRHVAHPERFLNAHWLNPAYLMP- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHH-------HHHhhcCCcccEEEEecCCccccCc-
Confidence 7789999999999964 34 457788888899999887666555443 233332211000 011122221110
Q ss_pred hccCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012596 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (460)
Q Consensus 272 ~~g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~E~ 350 (460)
..-++-+ +.+.+.++++.+++...|..+...+|..| +....+....++|+
T Consensus 147 ----lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G-------------------------fi~nri~~~~l~EA 197 (314)
T PRK08269 147 ----LVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG-------------------------YIVPRIQALAMNEA 197 (314)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC-------------------------cchHHHHHHHHHHH
Confidence 0011111 34788999999999999988777676432 12345667789999
Q ss_pred HHHHHHcCCCcccccc
Q 012596 351 RWLATKMGAKPATITG 366 (460)
Q Consensus 351 ~~la~a~Gi~~~~~~~ 366 (460)
+.++++.|++++++..
T Consensus 198 l~l~e~g~~~~e~iD~ 213 (314)
T PRK08269 198 ARMVEEGVASAEDIDK 213 (314)
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999999999887654
No 127
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.65 E-value=5.5e-07 Score=88.17 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=97.6
Q ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHHHHHHhhh
Q 012596 142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 142 ~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~ 221 (460)
+|..|.++|..+.|+.||++++.++...+.|... ...++ .++++++|+||+|||...+.++++++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID------------EASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS------------EEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee------------eccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhh
Confidence 6888999986689999999998887776666421 22333 4668999999999999999999999999
Q ss_pred cCCCCCeEEEeccCCccchhhhHHHHHHHHhC--CCCCCEEEEECcccHH------HHhccCCeEEEEcc-CCHHHHHHH
Q 012596 222 YVDPGLPFISLSKGLELNTLRMMSQIIPQALR--NPRQPFIALSGPSFAL------ELMNKLPTAMVVAS-KDRKLANAV 292 (460)
Q Consensus 222 ~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg--~~~~~~~v~~gP~~a~------e~~~g~~~~i~i~~-~d~~~~~~l 292 (460)
+++++++|++++. +- ..+.+.+.+.++ ..++....+.||.... +...|....++... .+.+.++.+
T Consensus 68 ~~~~~~iv~Dv~S-vK----~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 68 YLKPGAIVTDVGS-VK----APIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp GS-TTSEEEE--S--C----HHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred hcCCCcEEEEeCC-CC----HHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 9999999998763 21 133344555444 1123344566773211 22345443333232 345789999
Q ss_pred HHHHhcCCceEEEcCChHHHHHH
Q 012596 293 QQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 293 ~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
++++...|.++...+--.+....
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~ 165 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIM 165 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHH
Confidence 99999999988776544444433
No 128
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.62 E-value=7.8e-08 Score=94.67 Aligned_cols=147 Identities=13% Similarity=0.201 Sum_probs=105.3
Q ss_pred CCceeecCCCCCCCCCcccccccccc----ccCCcccchhhhhhhhhcccceeeeeccccchhccCCCeEEEECcchHHH
Q 012596 65 NDNTIITPYPDDPDPEPVSAVSSEIR----TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGT 140 (460)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~ 140 (460)
.++..+-|.|. |+|+++||+..... +-+..++-..+.+.|++ .-+ .+.+++ .+++||+|.|.+|+
T Consensus 91 e~gi~Vvn~P~-~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr------~~~--~G~el~--GKTLgvlG~GrIGs 159 (406)
T KOG0068|consen 91 ENGILVVNTPT-ANSRSAAELTIGLILSLARQIGQASASMKEGKWNR------VKY--LGWELR--GKTLGVLGLGRIGS 159 (406)
T ss_pred hCCeEEEeCCC-CChHHHHHHHHHHHHHHhhhcchhheeeecCceee------cce--eeeEEe--ccEEEEeecccchH
Confidence 46789999999 99999999987633 44444444455665543 322 234464 68999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHH-H
Q 012596 141 AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-G 218 (460)
Q Consensus 141 ~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~-~ 218 (460)
-.|.++..-| ..|+.||.-.. .+.....| ++.. +.+|++..||+|-+.+|.. .++.++. +
T Consensus 160 eVA~r~k~~g--m~vI~~dpi~~-~~~~~a~g--------------vq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~ 221 (406)
T KOG0068|consen 160 EVAVRAKAMG--MHVIGYDPITP-MALAEAFG--------------VQLV-SLEEILPKADFITLHVPLTPSTEKLLNDE 221 (406)
T ss_pred HHHHHHHhcC--ceEEeecCCCc-hHHHHhcc--------------ceee-eHHHHHhhcCEEEEccCCCcchhhccCHH
Confidence 9999999877 67877775321 12222223 2322 6889999999999999954 5777764 4
Q ss_pred hhhcCCCCCeEEEeccCCccch
Q 012596 219 ISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 219 i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
....+++|..||++++|-..++
T Consensus 222 tfA~mKkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 222 TFAKMKKGVRIINVARGGVVDE 243 (406)
T ss_pred HHHHhhCCcEEEEecCCceech
Confidence 5667889999999999876654
No 129
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.60 E-value=9.1e-07 Score=84.49 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=111.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHH-HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~-l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
|+|+|||+|.|..+++..+.+.|. ...+..+..+...... +...|. ..+.+..+.++.+|+++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~--------------~~~~~n~~~~~~s~v~~ 66 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGV--------------KTVFTNLEVLQASDVVF 66 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCc--------------eeeechHHHHhhcccee
Confidence 689999999999999999999884 2344445443222222 343332 22223367788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS- 283 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~~- 283 (460)
++||.+.+..++.++...+..+.+|+++.-|+...+ +.+.++. ..-.+...|+.+..+..|.. .+..+.
T Consensus 67 ~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~-------l~~~l~~--~~rviRvmpNtp~~v~eg~s-v~~~g~~ 136 (267)
T KOG3124|consen 67 LSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSS-------LESKLSP--PTRVIRVMPNTPSVVGEGAS-VYAIGCH 136 (267)
T ss_pred EeecchhHHHHhhcCccccccceEEEEEeecccHHH-------HHHhcCC--CCceEEecCCChhhhhcCcE-EEeeCCC
Confidence 999999999999999887777899999998887653 3444442 12346778888877766643 223332
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChH
Q 012596 284 KDRKLANAVQQLLASKHLRISTSSDVT 310 (460)
Q Consensus 284 ~d~~~~~~l~~lL~~~g~~v~~~~Di~ 310 (460)
...+..+.++++|+..|+.....++.+
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred cchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 234566889999999999988877644
No 130
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.52 E-value=1.2e-06 Score=86.45 Aligned_cols=159 Identities=12% Similarity=0.103 Sum_probs=104.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCcE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADY 202 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDi 202 (460)
++...+|||||.|+||..+|..|.++| +.|...+|.+ .-+..++.|.. ..+.+.+.+ +..|+
T Consensus 49 ~k~tl~IaIIGfGnmGqflAetli~aG--h~li~hsRsd-yssaa~~yg~~--------------~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 49 WKATLVIAIIGFGNMGQFLAETLIDAG--HGLICHSRSD-YSSAAEKYGSA--------------KFTLLHDLCERHPDV 111 (480)
T ss_pred cccceEEEEEecCcHHHHHHHHHHhcC--ceeEecCcch-hHHHHHHhccc--------------ccccHHHHHhcCCCE
Confidence 344689999999999999999999999 9999999987 22222333321 112333333 57899
Q ss_pred EEEccchhcHHHHHHHhhhc-CCCCCeEEEeccCCccchhhhHHHHHHHHhCCCC--CCEEEEECcccHHHHhccCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAM 279 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~-l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~--~~~~v~~gP~~a~e~~~g~~~~i 279 (460)
|++||....++.++...-.. ++.++++++...--.++ .+.+.+.++... .-...+.||....+-.+|.+-.+
T Consensus 112 vLlctsilsiekilatypfqrlrrgtlfvdvlSvKefe-----k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVy 186 (480)
T KOG2380|consen 112 VLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFE-----KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVY 186 (480)
T ss_pred EEEEehhhhHHHHHHhcCchhhccceeEeeeeecchhH-----HHHHHHhCccccceEeecCCcCCCcCCCccccCceEE
Confidence 99999999999988777554 77889988765422222 234455555421 11224578875554445544321
Q ss_pred E---Ec--cCCHHHHHHHHHHHhcCCceEE
Q 012596 280 V---VA--SKDRKLANAVQQLLASKHLRIS 304 (460)
Q Consensus 280 ~---i~--~~d~~~~~~l~~lL~~~g~~v~ 304 (460)
. ++ ....+.++.+.++|...|.+..
T Consensus 187 dkvRig~~~~r~ercE~fleIf~cegckmV 216 (480)
T KOG2380|consen 187 DKVRIGYAASRPERCEFFLEIFACEGCKMV 216 (480)
T ss_pred EEeeccccccchHHHHHHHHHHHhcCCeEE
Confidence 1 11 1237889999999998887754
No 131
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.47 E-value=1.4e-06 Score=85.60 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=68.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||||+|||+|.||..++..|.+.+.+.+ +.+||+++++++.+.+.. +....++.++++.++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-------------~~~~~~~~~ell~~~DvVvi 67 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-------------GAKACLSIDELVEDVDLVVE 67 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-------------CCeeECCHHHHhcCCCEEEE
Confidence 4799999999999999999987531245 558899998877766531 12345688887789999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|+|.....++...+.+ .|..++.++.|
T Consensus 68 ~a~~~~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 68 CASVNAVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred cCChHHHHHHHHHHHH---cCCCEEEEchH
Confidence 9998888777666544 34445555544
No 132
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.47 E-value=2.2e-06 Score=80.43 Aligned_cols=126 Identities=13% Similarity=0.261 Sum_probs=78.8
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||. |.||..++..|.++| +.|+ +++||+||+|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g--~~v~----------------------------------------~~~~DlVila 38 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG--LGVY----------------------------------------IKKADHAFLS 38 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC--CEEE----------------------------------------ECCCCEEEEe
Confidence 68999999 999999999999999 7775 1468999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-cCC
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-SKD 285 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i~-~~d 285 (460)
+|...+.++++++. .+|+++.. += ..+.+...+.+| ...+.||..+..... . ..++.. ..+
T Consensus 39 vPv~~~~~~i~~~~------~~v~Dv~S-vK----~~i~~~~~~~vg-----~HPMfGp~~a~~~lf-~-~~iv~~~~~~ 100 (197)
T PRK06444 39 VPIDAALNYIESYD------NNFVEISS-VK----WPFKKYSGKIVS-----IHPLFGPMSYNDGVH-R-TVIFINDISR 100 (197)
T ss_pred CCHHHHHHHHHHhC------CeEEeccc-cC----HHHHHhcCCEEe-----cCCCCCCCcCccccc-c-eEEEECCCCC
Confidence 99999888887764 25666542 11 011111111222 223447766542111 1 222232 334
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChHHHHHH
Q 012596 286 RKLANAVQQLLASKHLRISTSSDVTGVEIA 315 (460)
Q Consensus 286 ~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ 315 (460)
++..+.++++++ |.++...+--.+++..
T Consensus 101 ~~~~~~~~~l~~--G~~~~~~t~eeHD~~~ 128 (197)
T PRK06444 101 DNYLNEINEMFR--GYHFVEMTADEHDLLM 128 (197)
T ss_pred HHHHHHHHHHHc--CCEEEEeCHHHHHHHH
Confidence 566788999998 6677665544444433
No 133
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.41 E-value=1.6e-06 Score=85.60 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+++||||||+|.||..++..|.+...+++|. +|+|++++.+.+.+.... ....+++++++.++|+|+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~------------~~~~~~~eell~~~D~Vv 72 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR------------PPPVVPLDQLATHADIVV 72 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC------------CcccCCHHHHhcCCCEEE
Confidence 4589999999999999999998741126766 889998887766553110 123457888888999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|.....++..... +.|..++..+.
T Consensus 73 i~tp~~~h~e~~~~aL---~aGk~Vi~~s~ 99 (271)
T PRK13302 73 EAAPASVLRAIVEPVL---AAGKKAIVLSV 99 (271)
T ss_pred ECCCcHHHHHHHHHHH---HcCCcEEEecc
Confidence 9999887777665544 34555555543
No 134
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.39 E-value=1.7e-05 Score=75.75 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=103.7
Q ss_pred CCeEEEECcch--------------------HHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCC
Q 012596 127 TNKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQ 181 (460)
Q Consensus 127 ~~kI~IIGaG~--------------------mG~~~A~~La~~G~~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~ 181 (460)
+|||+|.|+|+ -|..||..++++| |||++.+.+.+ +.+++...|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG--HDVVLaePn~d~~dd~~w~~vedAG--------- 69 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG--HDVVLAEPNRDIMDDEHWKRVEDAG--------- 69 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC--CcEEeecCCccccCHHHHHHHHhcC---------
Confidence 48999999997 3788999999999 99999987654 345555544
Q ss_pred CCCCceEEeCCHHhhcCCCcEEEEccchh-cHHHHHHHhhhcCCCCCeEEEeccCCccch-hhhHHHHHH---HHhCC-C
Q 012596 182 KLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNT-LRMMSQIIP---QALRN-P 255 (460)
Q Consensus 182 ~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~-~~~l~e~l~---~~lg~-~ 255 (460)
+.+++|-.++++.+++.++.+|-. .+-.+..+|.+++++|++|.+..+ +.+-. -..+...++ +-.|. +
T Consensus 70 -----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT-~sp~vLy~~LE~~Lr~kR~dVGvss 143 (340)
T COG4007 70 -----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT-VSPVVLYYSLEGELRTKREDVGVSS 143 (340)
T ss_pred -----cEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc-CchhHHHHHhhhhhcCchhhcCccc
Confidence 566666677889999999999965 788899999999999998877554 33321 011111221 11121 1
Q ss_pred CCCEEEEECcccHHHHhccCCeE-EEEccCCHHHHHHHHHHHhcCCceEEEcC
Q 012596 256 RQPFIALSGPSFALELMNKLPTA-MVVASKDRKLANAVQQLLASKHLRISTSS 307 (460)
Q Consensus 256 ~~~~~v~~gP~~a~e~~~g~~~~-i~i~~~d~~~~~~l~~lL~~~g~~v~~~~ 307 (460)
.+|+++-+.|.+..-+..|+.+. ..+ ...++.+++.++.++.|..++..+
T Consensus 144 mHPAgvPGtp~h~~yviagr~t~g~el--ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 144 MHPAGVPGTPQHGHYVIAGRSTEGKEL--ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cCCCCCCCCCCCceEEEeccCCCceee--ccHHHHHHHHHHHHhcCCceEecC
Confidence 23332222232221111111111 111 246889999999999998887643
No 135
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.36 E-value=1.9e-06 Score=85.67 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|+|+|.||..+|..|...| .+|++++|++++.+.+.+.|.. ....+++.+.++++|+||.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARITEMGLI------------PFPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCCe------------eecHHHHHHHhccCCEEEEC
Confidence 479999999999999999999888 8999999998876665544321 01123566778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|...+. .+..+.+++++++|++..
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9976322 234455678899999875
No 136
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.35 E-value=3e-06 Score=85.01 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
||||+|||+|.||..+|..++..|.. +|+++|++++.++.....-.... ........++.+++.+ .+++||+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~d~~-~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAA--PVEGFDTKITGTNDYE-DIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhh--hhcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence 58999999999999999999998843 99999998875543221100000 0001122455556775 47999999998
Q ss_pred cc--h--------------hcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 207 MP--V--------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 207 Vp--~--------------~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+. . ....++++.|.++. ++.++|..+|-+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 63 2 12455666676766 456677777643
No 137
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.34 E-value=1.3e-06 Score=78.18 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=68.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++|+|+|+|.||..++..|.+.| .++|++|+|++++.+.+.+.... .+ . . ....+..++++++|+||+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~-~~-----~--~-~~~~~~~~~~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE-LG-----I--A-IAYLDLEELLAEADLIIN 87 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh-cc-----c--c-eeecchhhccccCCEEEe
Confidence 3579999999999999999999885 27899999999887776654211 00 0 0 122356666789999999
Q ss_pred ccchhcH--HHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFS--SSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~--~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|.... ..+... ...+++++++++++.
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 88 TTPVGMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred CcCCCCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 9997653 222111 123567889998864
No 138
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.30 E-value=2.1e-06 Score=89.93 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=57.6
Q ss_pred CeEEEECcchHHHHHHH--HH----HhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 128 NKVVVLGGGSFGTAMAA--HV----ANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~--~L----a~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+||+|||+|.||.+++. .+ +.+| ++|.+||++++.++.+..... .+.+....+.++..++|..+++++||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g--~eV~L~Did~e~l~~~~~~~~--~~~~~~~~~~~I~~ttD~~eal~~AD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG--STIALMDIDEERLETVEILAK--KIVEELGAPLKIEATTDRREALDGAD 76 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCC--CEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhcCCC
Confidence 58999999999998766 34 3344 799999999987776554321 11122223446778899999999999
Q ss_pred EEEEccch
Q 012596 202 YCLHAMPV 209 (460)
Q Consensus 202 iVilaVp~ 209 (460)
+||++++.
T Consensus 77 ~Vi~ai~~ 84 (423)
T cd05297 77 FVINTIQV 84 (423)
T ss_pred EEEEeeEe
Confidence 99999985
No 139
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.27 E-value=6e-06 Score=82.84 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=68.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH--hhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN--EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~--~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.||+.+|..|+..|.. +|+++|+.++..+... ...... .......++.+.|.++ +++||+||+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~----~~~~~~~i~~t~d~~~-~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASP----VGGFDTKVTGTNNYAD-TANSDIVVI 75 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhh----ccCCCcEEEecCCHHH-hCCCCEEEE
Confidence 6999999999999999999998832 8999999765433111 001000 0111235667788877 689999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++... .+++++++|.++. ++.++|..+|-.
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 98731 2344556666664 567888888743
No 140
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.21 E-value=8.5e-06 Score=72.44 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=72.1
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+|||+ |.+|..+|..|...+...++.++|++++.++.....-....+ ..+.+..+..+..+.+++||+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASA----PLPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHH----GSTEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhh----hcccccccccccccccccccEEEEe
Confidence 79999999 999999999999998767899999997755433221000000 0111233333445568999999998
Q ss_pred cch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhC
Q 012596 207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (460)
Q Consensus 207 Vp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg 253 (460)
.-. . .++++.+.|.++- ++.+++.++|-++ .+...+.+..+
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-----~~t~~~~~~s~ 133 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-----VMTYVAQKYSG 133 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-----HHHHHHHHHHT
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-----HHHHHHHHhhC
Confidence 732 1 1333445566665 5667777776433 34455555433
No 141
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.18 E-value=6.3e-06 Score=71.62 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=64.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|+|+ |.||..++..+.+.. ++++. ++++.++.. .|.....+.+.. +.++.++++++++++.+|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~~~~-----~g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKPSAK-----VGKDVGELAGIG-PLGVPVTDDLEELLEEADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTTSTT-----TTSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCCccc-----ccchhhhhhCcC-CcccccchhHHHhcccCCEEEE
Confidence 69999999 999999999999842 26655 667765210 011111111111 3345677899999999999998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
++-...+.+.++...+ .+..+|..++|+..+.
T Consensus 74 fT~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALK---HGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp ES-HHHHHHHHHHHHH---HT-EEEEE-SSSHHHH
T ss_pred cCChHHhHHHHHHHHh---CCCCEEEECCCCCHHH
Confidence 8855555555555444 3778888888997654
No 142
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=4.9e-06 Score=82.57 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=59.5
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||.| .||.+||..|.++| +.|++|++... +++++++.||+||
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~g--atVtv~~~~t~----------------------------~l~e~~~~ADIVI 207 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAH--CSVTVVHSRST----------------------------DAKALCRQADIVV 207 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEECCCCC----------------------------CHHHHHhcCCEEE
Confidence 36899999996 99999999999999 99999987531 5777889999999
Q ss_pred Eccchh-cHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~-~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++.. .+.... +++|+++|+++
T Consensus 208 savg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 208 AAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred EecCChhcccHhh------ccCCcEEEEec
Confidence 999864 343332 77899999986
No 143
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.15 E-value=3.5e-05 Score=65.80 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=62.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL 204 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVi 204 (460)
+||+|||+|.+|......+.+...+.+|. ++|++++..+.+.+.. ++...+|.+++++ +.|+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-------------GIPVYTDLEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-------------TSEEESSHHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-------------cccchhHHHHHHHhhcCCEEE
Confidence 58999999999999999998874335655 8899998888776542 1236678888876 789999
Q ss_pred EccchhcHHHHHHHhhh
Q 012596 205 HAMPVQFSSSFLEGISD 221 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~ 221 (460)
+++|.....+.+....+
T Consensus 68 I~tp~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALE 84 (120)
T ss_dssp EESSGGGHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHH
Confidence 99998876666655544
No 144
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.15 E-value=8.2e-06 Score=82.23 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=65.8
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+|+|||+|.||..++..+.. .+ ..+|++|+|++++.+.+.+.-.. . ...+.+.+++++++++||+|+.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~-~-------g~~~~~~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRA-Q-------GFDAEVVTDLEAAVRQADIISC 195 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHh-c-------CCceEEeCCHHHHHhcCCEEEE
Confidence 4789999999999999986654 23 27899999999988887764110 0 0124566788888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++++. ..++. .+.+++++. |++.
T Consensus 196 aT~s~--~pvl~--~~~l~~g~~-i~~i 218 (314)
T PRK06141 196 ATLST--EPLVR--GEWLKPGTH-LDLV 218 (314)
T ss_pred eeCCC--CCEec--HHHcCCCCE-EEee
Confidence 99875 22222 145678884 4443
No 145
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.15 E-value=1.4e-05 Score=79.79 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+|++|||+|.+|..++..|.+.| .+|++++|++++.+...+.|... ...+++.+.+.++|+||.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~G~~~------------~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEMGLSP------------FHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCee------------ecHHHHHHHhCCCCEEEEC
Confidence 579999999999999999999988 89999999987766665544211 1113566778899999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|...+ -++....++++.+||++..
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEcc
Confidence 986432 2344556778999999864
No 146
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.13 E-value=1.9e-05 Score=79.45 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||+|.||..++..|...| ..+|++++|++++.+.+.+. |. .+...++..+++.++|+||
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g~------------~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELGG------------NAVPLDELLELLNEADVVI 243 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcCC------------eEEeHHHHHHHHhcCCEEE
Confidence 3589999999999999999998865 26899999999888777664 21 1111234567778999999
Q ss_pred EccchhcHHHHHHHhhhcC-CCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYV-DPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l-~~~~iIV~~~~ 234 (460)
.|+++.....++..+.... .++.++|+++.
T Consensus 244 ~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 244 SATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 9999876644444443222 24678888875
No 147
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.11 E-value=0.00021 Score=70.14 Aligned_cols=96 Identities=21% Similarity=0.323 Sum_probs=77.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.+||+|||.|+=|.+=|.+|.++| .+|++--|.... .+...+.|. .+ -+.+|+++.+|+|+
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSG--lnViiGlr~g~~s~~kA~~dGf--------------~V-~~v~ea~k~ADvim 79 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSG--LNVIIGLRKGSSSWKKAKEDGF--------------KV-YTVEEAAKRADVVM 79 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcC--CcEEEEecCCchhHHHHHhcCC--------------Ee-ecHHHHhhcCCEEE
Confidence 5689999999999999999999999 888877775544 455555553 22 26889999999999
Q ss_pred EccchhcHHHHHH-HhhhcCCCCCeEEEeccCCccc
Q 012596 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 205 laVp~~~~~~vl~-~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+-+|+..-.++++ +|.+.+++|.. +..+-|+...
T Consensus 80 ~L~PDe~q~~vy~~~I~p~Lk~G~a-L~FaHGfNih 114 (338)
T COG0059 80 ILLPDEQQKEVYEKEIAPNLKEGAA-LGFAHGFNIH 114 (338)
T ss_pred EeCchhhHHHHHHHHhhhhhcCCce-EEecccccee
Confidence 9999999888887 89999998874 5556677653
No 148
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.11 E-value=1.6e-05 Score=80.30 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=68.4
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
-+.+||+|||+|.||..+|..++..|. .+|+++|++++.++ .+...+.. . -...+..+..+.|.+ ++++||+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~-~---~~~~~~~I~~~~d~~-~l~~aDi 77 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSN-V---IAGSNSKVIGTNNYE-DIAGSDV 77 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhh-h---ccCCCeEEEECCCHH-HhCCCCE
Confidence 345899999999999999999998884 47999999887542 22111110 0 001122466667775 5799999
Q ss_pred EEEccch---------------------hcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 203 CLHAMPV---------------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 203 VilaVp~---------------------~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
||++.-. ....++++.|.++. ++..++..+|-.
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 9996611 01344556666665 455777777643
No 149
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.10 E-value=2e-05 Score=79.57 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH--hhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN--EKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~--~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.+||+|||+|.||..+|..++..|. .+|.++|++++.++... ..+.. .+ ......+..+++.+ ++++||+|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~-~~---~~~~~~i~~~~d~~-~l~~ADiV 77 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFS-TL---VGSNINILGTNNYE-DIKDSDVV 77 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhc-cc---cCCCeEEEeCCCHH-HhCCCCEE
Confidence 45799999999999999999998875 58999999876543211 11110 00 11122455556776 57999999
Q ss_pred EEcc--chh--------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 204 LHAM--PVQ--------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 204 ilaV--p~~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|++. +.. ...++.+.+.++. ++.++|..+|-.
T Consensus 78 Vitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 78 VITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 9998 321 2445566666664 566777777743
No 150
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.06 E-value=1.5e-06 Score=75.22 Aligned_cols=95 Identities=24% Similarity=0.286 Sum_probs=63.4
Q ss_pred HHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCCceeeecccCCCccchHHHHhhC-----CCChHHH
Q 012596 328 IVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRLGS-----GEKLDDI 400 (460)
Q Consensus 328 ~~~~~kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~--~~gd~~~t~~s~~srn~~~g~~l~~-----g~~~e~~ 400 (460)
.+..+|+.+|.+......++.|++.++++.|+|++++.++. +.+... ..+++ ....+.+ +++++
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~------~~~~~-~~~~~~~~~~~~~f~l~-- 72 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSW------MLKNR-APRMILNGDFDPGFSLD-- 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBH------HHHHH-HHHHHHTTTTCSSSBHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCch------HHHhh-hhhhhhcccCCccchhH--
Confidence 34456777888888999999999999999999999988752 222111 01111 1112322 22332
Q ss_pred HhhcccceehhhhHHHHHHHHHHcCCCChHHHHHHHHHh
Q 012596 401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID 439 (460)
Q Consensus 401 ~~~~~~~~eg~kd~g~vv~lA~~~gv~~P~~~~v~~ll~ 439 (460)
...||+++++++|++.|+++|+.+.+.+++.
T Consensus 73 --------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 73 --------LARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp --------HHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred --------hhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3569999999999999999999999988885
No 151
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.05 E-value=7.8e-06 Score=84.66 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=71.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~ 199 (460)
+.++|+|||.|++|.+-|.+|...| ++|++--|.. +..+...+.|. .+ .+.+|+++.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSG--vnVvvglr~~~id~~~~s~~kA~~dGF--------------~v-~~~~Ea~~~ 97 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KV-GTYEELIPQ 97 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCcccc--ceeEEeccccccccccchHHHHHhcCC--------------cc-CCHHHHHHh
Confidence 4589999999999999999999999 8888554442 23333333332 11 368889999
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
||+|++.+|.+.-..+.+++.+++++++.+. .+-|+..
T Consensus 98 ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487)
T PRK05225 98 ADLVINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487)
T ss_pred CCEEEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence 9999999998876667789999999887654 4557664
No 152
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.01 E-value=4.8e-05 Score=76.58 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||+|||+|.+|..+|..|+..|...++.++|++++.++.....-.....+. .. ..+..+.|+++ +++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~--~~-~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL--KN-PKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC--CC-CEEEECCCHHH-hCCCCEEEEC
Confidence 47999999999999999999988865689999998765543322110011110 11 24566678876 7999999996
Q ss_pred cch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 207 Vp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
.-. . .++++.+.|.++ .++.+++..+|-.
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 532 1 133344556665 4567788777743
No 153
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.00 E-value=2e-05 Score=69.52 Aligned_cols=96 Identities=24% Similarity=0.333 Sum_probs=65.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+..++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.... .. ..+...++..+.+.++|+||.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~------~~--~~~~~~~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG------VN--IEAIPLEDLEEALQEADIVIN 81 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG------CS--EEEEEGGGHCHHHHTESEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc------cc--cceeeHHHHHHHHhhCCeEEE
Confidence 35899999999999999999999983 3599999999999988775310 00 012233566667789999999
Q ss_pred ccchhcH---HHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFS---SSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~---~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|.... ++.+....+. -.+++++.
T Consensus 82 aT~~~~~~i~~~~~~~~~~~---~~~v~Dla 109 (135)
T PF01488_consen 82 ATPSGMPIITEEMLKKASKK---LRLVIDLA 109 (135)
T ss_dssp -SSTTSTSSTHHHHTTTCHH---CSEEEES-
T ss_pred ecCCCCcccCHHHHHHHHhh---hhceeccc
Confidence 9997532 2222221111 14888885
No 154
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=1.5e-05 Score=79.18 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=58.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~-r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..++|+||| .|.||.+||.+|.++| +.|++|+ |++ +++++++.||+|
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g--~tVtv~~~rT~-----------------------------~l~e~~~~ADIV 205 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAAN--ATVTIAHSRTR-----------------------------DLPAVCRRADIL 205 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCC--CEEEEECCCCC-----------------------------CHHHHHhcCCEE
Confidence 468999999 9999999999999999 9999995 543 456777899999
Q ss_pred EEccchhc-HHHHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|++... +... ++++|+++|++.
T Consensus 206 Isavg~~~~v~~~------~lk~GavVIDvG 230 (296)
T PRK14188 206 VAAVGRPEMVKGD------WIKPGATVIDVG 230 (296)
T ss_pred EEecCChhhcchh------eecCCCEEEEcC
Confidence 99999654 3332 277899999975
No 155
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.94 E-value=2.8e-05 Score=76.32 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=68.9
Q ss_pred EEEECc-chHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 130 VVVLGG-GSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 130 I~IIGa-G~mG~~~A~~La~~G--~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+|||+ |.||..++..|+..| ...+|+++|+++++++.....-..... .. ...++..++|+.+++++||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~--~~-~~~~i~~~~d~~~~~~~aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE--PL-ADIKVSITDDPYEAFKDADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhh--hc-cCcEEEECCchHHHhCCCCEEEEC
Confidence 689999 999999999999877 446899999988765544332111000 11 123567778877889999999995
Q ss_pred cch----------------hcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~----------------~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
.-. ....++.+.+.++. ++.+++..+|
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tN 120 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSN 120 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 521 12455556666655 5677777776
No 156
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.94 E-value=3.9e-05 Score=78.77 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=62.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||||.|||+|.+|+..|..|+++|. .+|++.+|+.++++++..... +.+. ..+ .+.-.+.+.+++++.|+||.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~---~~v--D~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEA---LQV--DAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcccccee---EEe--cccChHHHHHHHhcCCEEEE
Confidence 5899999999999999999999984 799999999999999876531 1110 000 00111245577889999999
Q ss_pred ccchhcHHHHHH
Q 012596 206 AMPVQFSSSFLE 217 (460)
Q Consensus 206 aVp~~~~~~vl~ 217 (460)
+.|.+....+++
T Consensus 75 ~~p~~~~~~i~k 86 (389)
T COG1748 75 AAPPFVDLTILK 86 (389)
T ss_pred eCCchhhHHHHH
Confidence 999876555543
No 157
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.93 E-value=4.5e-05 Score=77.27 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=67.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|.+|...+..|.......+|.+|+|++++++.+.+.-.. +...+.++++++++++++|+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~--------~g~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD--------YEVPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------hCCcEEEeCCHHHHhccCCEEEEe
Confidence 478999999999999776665432237899999999988877653110 011255678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+.. .++. ...+++|+.|..+.
T Consensus 200 T~s~~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 200 TPSRK--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecC
Confidence 99743 1111 23457888876654
No 158
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.92 E-value=7.5e-05 Score=75.08 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=63.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|||+|.+|+.+|..|+..|.-.+|.++|+++++++. ..+ .+... +.+ +..+ .+.+.+ .+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~----~~~i-~~~d~~-~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVK----PVRI-YAGDYA-DCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-ccC----CeEE-eeCCHH-HhCCCCEEEE
Confidence 6899999999999999999998844589999999875542 111 11111 111 1122 245664 4799999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.. .++++.+.|.++- ++.+++..+|
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tN 117 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTN 117 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 98742 1334445566654 3455555555
No 159
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.91 E-value=8.5e-05 Score=74.60 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=65.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVila 206 (460)
+||+|||+|.+|.++|..|+..|..++|+++|+++++++.+...-....++ .+..... ..+.++ +++||+||++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~----~~~~~~i~~~~~~~-l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF----LPSPVKIKAGDYSD-CKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc----cCCCeEEEcCCHHH-hCCCCEEEEc
Confidence 489999999999999999999885458999999988766554321000000 0111222 245544 7899999998
Q ss_pred cchh----------------cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 207 Vp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
+... .+.++.+.|.++. ++.+++..+|-
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 8641 1334445565554 46677777763
No 160
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=5.4e-05 Score=72.62 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=66.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCC---HHhh-cCCCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTD---AKTA-LLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~---~~ea-~~~aDi 202 (460)
|+|.|||+|.+|..+|..|.+.| |+|++++++++.+++......... .+.. .++ +.++ +.++|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~~~~~~---------~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLADELDTH---------VVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhhhcceE---------EEEecCCCHHHHHhcCCCcCCE
Confidence 78999999999999999999999 999999999998887444111100 0111 112 2333 568999
Q ss_pred EEEccchhcHHHHHHHhhhc-CCCCCeEEEecc
Q 012596 203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSK 234 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~-l~~~~iIV~~~~ 234 (460)
++.++..+.+..++-.+... +....++.-..+
T Consensus 70 vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 70 VVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred EEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999998888877766533 444445554443
No 161
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.89 E-value=3.8e-05 Score=72.19 Aligned_cols=171 Identities=13% Similarity=0.210 Sum_probs=101.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCC--CC--CCCCceE
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFP--EQ--KLPENVI 188 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-----------~g~~~~~~~--~~--~l~~~i~ 188 (460)
|..+..|+|||+|.||+.+|...+.+| ++|.++|++++.+.+..+ .+....... ++ ..-..++
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg--~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSG--LNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcC--CceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 445678999999999999999999999 999999999886543322 111000000 00 0012355
Q ss_pred EeCCHHhhcCCCcEEEEccchh-c-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH--HhCCCCCCEEEEEC
Q 012596 189 ATTDAKTALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSG 264 (460)
Q Consensus 189 a~~~~~ea~~~aDiVilaVp~~-~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~--~lg~~~~~~~v~~g 264 (460)
.+++..++++++|+||-++-.. . -..++++|....++++++.+-+..+... .+...+++ .+++ -.+..
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt---~ia~~~~~~srf~G-----lHFfN 157 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLT---DIASATQRPSRFAG-----LHFFN 157 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHH---HHHhhccChhhhce-----eeccC
Confidence 6678888899999999887642 3 4567888888888888776654433322 11111111 1211 12233
Q ss_pred cccHH---HHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEEcCChHH
Q 012596 265 PSFAL---ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTG 311 (460)
Q Consensus 265 P~~a~---e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~~~Di~g 311 (460)
|.-.. |+..+. ...++.+..+..+=...|-......|..|
T Consensus 158 PvPvMKLvEVir~~-------~TS~eTf~~l~~f~k~~gKttVackDtpG 200 (298)
T KOG2304|consen 158 PVPVMKLVEVIRTD-------DTSDETFNALVDFGKAVGKTTVACKDTPG 200 (298)
T ss_pred CchhHHHhhhhcCC-------CCCHHHHHHHHHHHHHhCCCceeecCCCc
Confidence 33222 221111 12456777777776666766666666544
No 162
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.87 E-value=4.7e-05 Score=79.91 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=99.7
Q ss_pred cCCCCCCCCcEEEEeccCCCCCCcC---------CCCCceeecCCCCCCCCCccccccccccccCCcccchhhhhhhhhc
Q 012596 38 LPHFPTKNPTLVFTLNSSSGSATTN---------NNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKL 108 (460)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 108 (460)
+-..|+.++.+.--+.--+-..||. ..+=+.-+.|+|+ +.-.+.+|...... .+.|+..
T Consensus 177 ~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d-~~tk~~aD~~~G~~-----------~s~~d~~ 244 (476)
T PTZ00075 177 LTKNPDKWTNLVKKIVGVSEETTTGVHRLYKMLKKGELLFPAINVND-SVTKSKFDNIYGCR-----------HSLIDGI 244 (476)
T ss_pred hhcCchhhhhhhhccEeeeecchHHHHHHHHHHHCCCCCceEEEeCC-cchHHHHHHHHHHH-----------HHHHHHH
Confidence 3345666766665554333333332 2234678889998 66666666533321 1122222
Q ss_pred ccceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceE
Q 012596 109 VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188 (460)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~ 188 (460)
+| ... ..-..++|+|||.|.+|..+|.+|...| .+|+++++++.+.......|. .
T Consensus 245 ~R------~~~---~~LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~~G~--------------~ 299 (476)
T PTZ00075 245 FR------ATD---VMIAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAMEGY--------------Q 299 (476)
T ss_pred HH------hcC---CCcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHhcCc--------------e
Confidence 21 111 1224689999999999999999999887 899999998765533333332 1
Q ss_pred EeCCHHhhcCCCcEEEEccchhcHHHHHH-HhhhcCCCCCeEEEeccC
Q 012596 189 ATTDAKTALLGADYCLHAMPVQFSSSFLE-GISDYVDPGLPFISLSKG 235 (460)
Q Consensus 189 a~~~~~ea~~~aDiVilaVp~~~~~~vl~-~i~~~l~~~~iIV~~~~G 235 (460)
. .+.+++++.+|+|++++.. ..++. +....++++.+++++..+
T Consensus 300 ~-~~leell~~ADIVI~atGt---~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 300 V-VTLEDVVETADIFVTATGN---KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred e-ccHHHHHhcCCEEEECCCc---ccccCHHHHhccCCCcEEEEcCCC
Confidence 1 2577888999999999743 33442 455668899999998765
No 163
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.86 E-value=6e-05 Score=75.43 Aligned_cols=99 Identities=20% Similarity=0.292 Sum_probs=63.8
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
|+|||+|.||..+|..|+..|.. +|+++|++++..+...- .... ........+..+.|.+ ++++||+||+++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~----~~~~~~~~I~~t~d~~-~l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAA----PILGSDTKVTGTNDYE-DIAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhh----hhcCCCeEEEEcCCHH-HhCCCCEEEEec
Confidence 68999999999999999988833 99999998765432111 1100 0001122455556765 479999999977
Q ss_pred ch----------------hcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 208 PV----------------QFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 208 p~----------------~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
.. ....+++++|.++. ++.++|..+|-
T Consensus 75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP 117 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNP 117 (300)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 31 12445666677766 45566666663
No 164
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.84 E-value=9.1e-05 Score=72.53 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=64.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+|||+|+|+ |.||..++..+.+.. +.+++ +++++++..... . ..++...+|++++++++|+|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~-~~elvav~d~~~~~~~~~-~-------------~~~i~~~~dl~~ll~~~DvVi 65 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAE-DLELVAAVDRPGSPLVGQ-G-------------ALGVAITDDLEAVLADADVLI 65 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCcccccc-C-------------CCCccccCCHHHhccCCCEEE
Confidence 479999998 999999998888642 26665 577776533221 0 012334568888888899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
.+++.....+++....+ .|..+|.-+.|+..+.
T Consensus 66 d~t~p~~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 66 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred ECCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 88877666665544433 4555555567777654
No 165
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.82 E-value=0.00015 Score=68.28 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=63.6
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhc-CCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL-LGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiV 203 (460)
+.|+|+|+|+|+||..+|..|.+.| ++|+++|++++.++.+.+. +. ...+ .++.. .+||++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~~g~--------------~~v~-~~~l~~~~~Dv~ 89 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAELFGA--------------TVVA-PEEIYSVDADVF 89 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHcCC--------------EEEc-chhhccccCCEE
Confidence 4589999999999999999999999 9999999999888777654 21 1122 23333 379999
Q ss_pred EEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+-|..... ..+.++.+ + ..+|+.-.|+-.
T Consensus 90 vp~A~~~~I~~~~~~~l----~-~~~v~~~AN~~~ 119 (200)
T cd01075 90 APCALGGVINDDTIPQL----K-AKAIAGAANNQL 119 (200)
T ss_pred EecccccccCHHHHHHc----C-CCEEEECCcCcc
Confidence 96655443 34444444 2 457888777644
No 166
>PRK15076 alpha-galactosidase; Provisional
Probab=97.79 E-value=9.5e-05 Score=77.65 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=52.4
Q ss_pred CCeEEEECcchHHHHHHH--HHH-hcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAA--HVA-NKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~--~La-~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|+||+|||+|.||.+.+. .++ ..+. +.+|+++|+++++++.....-. ........+..+..++|..+++++||+
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~--~~~~~~~~~~~i~~ttD~~eal~dADf 78 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR--KLAESLGASAKITATTDRREALQGADY 78 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence 479999999999977665 554 1122 2689999999987653322100 000011112356778898888999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||+++-
T Consensus 79 Vv~ti~ 84 (431)
T PRK15076 79 VINAIQ 84 (431)
T ss_pred EeEeee
Confidence 998764
No 167
>PLN00203 glutamyl-tRNA reductase
Probab=97.78 E-value=0.00012 Score=78.28 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=69.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|+|||+|.||..++..|...|. .+|++++|+.++++.+.+.... ... .+...++..+++.++|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g------~~i--~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPD------VEI--IYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCC------Cce--EeecHhhHHHHHhcCCEEEEc
Confidence 5799999999999999999998882 3799999999998888764211 000 011224666778999999999
Q ss_pred cchhc---HHHHHHHhhhcC---CCCCeEEEecc
Q 012596 207 MPVQF---SSSFLEGISDYV---DPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~---~~~vl~~i~~~l---~~~~iIV~~~~ 234 (460)
+++.. ..+.++.+.+.- ....++|+++-
T Consensus 337 T~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 337 TSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred cCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 98643 455666653321 12247888763
No 168
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=0.00012 Score=74.26 Aligned_cols=94 Identities=11% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+++|||+|.+|...+..+.. .+. .+|.+|+|++++++++.+.-.. . ++..+...++.+++++++|+|+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~-~~v~v~~r~~~~a~~~~~~~~~-~------~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDI-ERVRVYSRTFEKAYAFAQEIQS-K------FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCc-cEEEEECCCHHHHHHHHHHHHH-h------cCCcEEEeCCHHHHHhcCCEEEE
Confidence 4789999999999998887764 332 5899999999988877653100 0 01124456788888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|+.. .++. ..+++|+.|+.+.
T Consensus 199 aT~s~~--p~i~---~~l~~G~hV~~iG 221 (325)
T PRK08618 199 VTNAKT--PVFS---EKLKKGVHINAVG 221 (325)
T ss_pred ccCCCC--cchH---HhcCCCcEEEecC
Confidence 999763 2332 4567888877653
No 169
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.75 E-value=0.00023 Score=73.92 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=68.7
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
...++|+|+|+|.+|..+|..+...| .+|+++++++.+.......|. .+ .+.+++++.+|+||
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~G~--------------~v-~~leeal~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMDGF--------------RV-MTMEEAAKIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhcCC--------------Ee-CCHHHHHhcCCEEE
Confidence 34689999999999999999999888 899999999876544444332 11 14567788999999
Q ss_pred EccchhcHHHHHH-HhhhcCCCCCeEEEeccC
Q 012596 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKG 235 (460)
Q Consensus 205 laVp~~~~~~vl~-~i~~~l~~~~iIV~~~~G 235 (460)
.++.. ..++. +....++++.++++...+
T Consensus 256 taTG~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TATGN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECCCC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 98764 33443 356678889999988764
No 170
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.75 E-value=0.00012 Score=62.99 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=63.2
Q ss_pred eEEEECc-chHHHHHHHHHHhc-CCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCcEEE
Q 012596 129 KVVVLGG-GSFGTAMAAHVANK-KSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL 204 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi 204 (460)
||+|+|+ |.+|..++..|.+. + +++..+ +++.+..+.+...+..... ... . ... .+.+ ..++|+||
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~--~~l~av~~~~~~~~~~~~~~~~~~~~---~~~-~--~~~~~~~~--~~~~DvV~ 70 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD--FEVVALAASARSAGKRVSEAGPHLKG---EVV-L--ELEPEDFE--ELAVDIVF 70 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC--ceEEEEEechhhcCcCHHHHCccccc---ccc-c--ccccCChh--hcCCCEEE
Confidence 6899995 99999999999985 4 677655 6554333333333211100 000 0 011 1222 24899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|.....+++..+.+.+.+|+++|+++.-+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 71 LALPHGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred EcCCcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 99999988887766666678899999998643
No 171
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.74 E-value=0.00022 Score=71.86 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=63.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVil 205 (460)
.+||+|||+|.+|..+|..|+..|.-.++.++|++.++++.....-..... +..++.. +++.+ .+++||+||+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----~~~~~~i~~~~~~-~~~~adivIi 79 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----FTSPTKIYAGDYS-DCKDADLVVI 79 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----ccCCeEEEeCCHH-HhCCCCEEEE
Confidence 579999999999999999999888434899999987765433321100000 1012233 34554 4799999999
Q ss_pred ccch--h--------------cHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~--~--------------~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+.-. . .+.++++.+.++- ++..++..+|
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsN 123 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASN 123 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 6532 1 1233344444443 4567777766
No 172
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.74 E-value=0.00018 Score=65.10 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=60.6
Q ss_pred hhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
.+|...+++.|+|.|.+|..+|..|...| ..|++++.+|-++-+....|. ++. +.+++++.+|
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~alqA~~dGf--------------~v~-~~~~a~~~ad 80 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIRALQAAMDGF--------------EVM-TLEEALRDAD 80 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHHTT---------------EEE--HHHHTTT-S
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHHHHHhhhcCc--------------Eec-CHHHHHhhCC
Confidence 46656789999999999999999999988 899999999976544444442 332 5788999999
Q ss_pred EEEEccchhcH--HHHHHHhhhcCCCCCeEEEec
Q 012596 202 YCLHAMPVQFS--SSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 202 iVilaVp~~~~--~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++|.++-...+ .+-+ +.+++++++.++.
T Consensus 81 i~vtaTG~~~vi~~e~~----~~mkdgail~n~G 110 (162)
T PF00670_consen 81 IFVTATGNKDVITGEHF----RQMKDGAILANAG 110 (162)
T ss_dssp EEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred EEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence 99999876542 3333 3467788877764
No 173
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.74 E-value=0.00045 Score=65.13 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=69.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+|++||+|++|..+...+-+.-.+. -|.+|||+.+++..+.+.-. ....+++++.+++.|+++-|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~-------------~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG-------------RRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC-------------CCccccHHHHhhccceeeee
Confidence 68999999999999998887541123 47799999998887765311 01225788888999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
-..+++++...++.+ .|.-+|.++-|-..+
T Consensus 68 AS~~Av~e~~~~~L~---~g~d~iV~SVGALad 97 (255)
T COG1712 68 ASPEAVREYVPKILK---AGIDVIVMSVGALAD 97 (255)
T ss_pred CCHHHHHHHhHHHHh---cCCCEEEEechhccC
Confidence 999999887777654 344444455554443
No 174
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.73 E-value=0.0002 Score=71.74 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=65.5
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~ 209 (460)
|+|||+|.+|+.+|..|+..|.-.+++++|+++++++.....-..... ... ...+..+++.+ .+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~--~~~-~~~i~~~~~~~-~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASA--FLA-TGTIVRGGDYA-DAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcc--ccC-CCeEEECCCHH-HhCCCCEEEEcCCC
Confidence 689999999999999999887556899999988766555432100000 001 12344445554 57999999998753
Q ss_pred h----------------cHHHHHHHhhhcCCCCCeEEEecc
Q 012596 210 Q----------------FSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 210 ~----------------~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
. .+.++.+.|.++. ++..++..+|
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sN 116 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSN 116 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 1 1344445566655 5667777776
No 175
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.71 E-value=0.00021 Score=74.58 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=67.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|+|+|.+|..+|..|...| .+|+++++++.+.......|. .+ .+.+++++.+|+||.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~G~--------------~v-~~l~eal~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMDGF--------------RV-MTMEEAAELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhcCC--------------Ee-cCHHHHHhCCCEEEE
Confidence 5689999999999999999999888 899999999876544443332 11 246777889999999
Q ss_pred ccchhcHHHHHH-HhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLE-GISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~-~i~~~l~~~~iIV~~~~ 234 (460)
++.. ..++. .....++++.++++...
T Consensus 274 aTG~---~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 274 ATGN---KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCCC---HHHHHHHHHhcCCCCCEEEEcCC
Confidence 8754 33443 45667888998888753
No 176
>PRK05442 malate dehydrogenase; Provisional
Probab=97.68 E-value=0.00018 Score=72.74 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=66.8
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHH--HHHHHHh--hcCCCccCCCCCCCCceEEeCCH
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPA--VCQSINE--KHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~~r~~~--~~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
|+.++||+|||+ |.+|..+|..|...+.-. ++.++|.++. +++.... .+... .+..++.++.+.
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~------~~~~~~~i~~~~ 74 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF------PLLAGVVITDDP 74 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh------hhcCCcEEecCh
Confidence 456789999998 999999999998766423 7999998542 2221110 01100 011123444445
Q ss_pred HhhcCCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 194 KTALLGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.+.+++||+||++--. . .++++.+.|.++.+++.++|..+|-++
T Consensus 75 y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 4668999999986531 1 134455566666656778888887443
No 177
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.67 E-value=0.00043 Score=68.14 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=74.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHH-HH-HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPA-VC-QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~-~~-~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
||||+|+| +|.||..++..+.+.. +.++. +++|... .. +.+.+.. +. .+.++.+++|++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~~~~~~~-------~~-~~~gv~~~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGTDAGELA-------GI-GKVGVPVTDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCCCHHHhc-------Cc-CcCCceeeCCHHHhcCCCCE
Confidence 37999999 6999999999998642 26665 5675422 11 1111100 00 01135566788886557899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~ 269 (460)
||.+++.....+.+..... .+..+|..+.|+..+..+.+.+..++ ....++.+|++.-
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~------~g~~v~~a~NfSl 129 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEK------AGIAAVIAPNFSI 129 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhc------CCccEEEECcccH
Confidence 9999988777666554433 46666766668876543333333222 1234666666554
No 178
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.67 E-value=0.00028 Score=70.78 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=67.0
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|+|||+|.+|...+..+.. .+. .+|.+|+|++++++++.++-.. . ...+. .++.+++++++|+|+.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~------~--~~~~~-~~~~~~av~~aDiVit 194 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARA------L--GPTAE-PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHh------c--CCeeE-ECCHHHHhhcCCEEEE
Confidence 4789999999999999999975 342 5799999999988887764210 0 01122 4678888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+|+.. .++. ..+++|+.|..+.
T Consensus 195 aT~s~~--Pl~~---~~~~~g~hi~~iG 217 (304)
T PRK07340 195 ATTSRT--PVYP---EAARAGRLVVAVG 217 (304)
T ss_pred ccCCCC--ceeC---ccCCCCCEEEecC
Confidence 999764 2222 2357888777664
No 179
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.65 E-value=0.00016 Score=75.87 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=66.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|||+|.||..++..|...|. .+|++++|++++++.+.+.... .+....+..+++.++|+||.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g~-----------~~~~~~~~~~~l~~aDvVI~ 248 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFGG-----------EAIPLDELPEALAEADIVIS 248 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcCC-----------cEeeHHHHHHHhccCCEEEE
Confidence 35799999999999999999998882 3799999999888777654210 11112355667789999999
Q ss_pred ccchhc---HHHHHHHhh-hcCCCCCeEEEecc
Q 012596 206 AMPVQF---SSSFLEGIS-DYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~---~~~vl~~i~-~~l~~~~iIV~~~~ 234 (460)
|+++.. ..+.++... ..-..+.+++++..
T Consensus 249 aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 249 STGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 998643 233333321 11123467888864
No 180
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.65 E-value=0.00023 Score=74.52 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=67.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANK-------KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~-------G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
+..||+|||+ |.+|..+|..|+.. +.-.++.++|++.++++...-+-.... ..+...+.+..+..+.+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa----~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSL----YPLLREVSIGIDPYEVF 174 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhh----hhhcCceEEecCCHHHh
Confidence 4579999999 99999999999987 533478999998876553322110000 01112355444444568
Q ss_pred CCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 198 LGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 198 ~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++||+||++--. . .++++.+.|.++..++.++|.++|-+
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 999999997532 1 13344445555445677888887744
No 181
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.65 E-value=0.00038 Score=68.45 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=59.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
||||+|||+|+||..++..|.+.. +.++. +++++.. .++..+.- ...+.+++|.+++..+.|+|+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~-~~~l~~v~~~~~~-~~~~~~~~-----------~~~~~~~~d~~~l~~~~DvVve 67 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDP-DLRVDWVIVPEHS-IDAVRRAL-----------GEAVRVVSSVDALPQRPDLVVE 67 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCC-CceEEEEEEcCCC-HHHHhhhh-----------ccCCeeeCCHHHhccCCCEEEE
Confidence 479999999999999999998753 25554 3444322 12111110 0023456778776456899999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
|++.....+...... +.|.-++..+.|
T Consensus 68 ~t~~~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 68 CAGHAALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred CCCHHHHHHHHHHHH---HcCCCEEEeChH
Confidence 999877666555443 346666666655
No 182
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.63 E-value=0.00028 Score=70.75 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..|..-+..+..--.-.+|.+|+|++++++++.++-.. .+...+.+.+++++++++||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~-------~~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK-------EFGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------hcCCcEEEeCCHHHHHhcCCEEEEe
Confidence 478999999999999988887642225899999999998877654210 0112356678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++.. .+++ .+.+++|+.|..+.
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiG 212 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAG 212 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecC
Confidence 99753 1111 23456787665543
No 183
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.61 E-value=0.00037 Score=73.07 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=65.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|+|||+|.||..++..|...|. .+|++++|+.++++.+.+.... ......+..+++.++|+||.|
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~-----------~~i~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG-----------EAVKFEDLEEYLAEADIVISS 247 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC-----------eEeeHHHHHHHHhhCCEEEEC
Confidence 4799999999999999999998873 5899999999887766653110 011123566778899999999
Q ss_pred cchhc---HHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~---~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.. ..+.++.....-+...+++++..
T Consensus 248 T~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred CCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 98643 23333332211112347888763
No 184
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.59 E-value=0.00034 Score=70.36 Aligned_cols=107 Identities=14% Similarity=0.308 Sum_probs=63.7
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc-CCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~-~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
|||+|+|+ |.+|..++..|+..|...+|+++|+++ ..+.+......... +........+..+++.++ +++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCCCCEEEE
Confidence 79999998 999999999999988434699999954 11211111000000 000001113455556554 899999999
Q ss_pred ccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 206 aVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++... .+.++.+.|.++. ++.++|..+|-++
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 88521 1334445566655 4556666666444
No 185
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.58 E-value=0.00042 Score=69.88 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..|..-+..+...-.-.+|.+|+|++++++++.+.-.. . ...+.+.++.++++++||+|+.|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~------~--~~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA------L--GFAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh------c--CCcEEEECCHHHHhcCCCEEEEe
Confidence 478999999999999988887643236899999999998877653210 0 12356678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++.. .+++ .+.+++|+.|..+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecC
Confidence 99754 2221 23567888877664
No 186
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.58 E-value=0.00019 Score=61.83 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=61.7
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEEE
Q 012596 129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (460)
Q Consensus 129 kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (460)
||+||| .|.+|..+...|.+.- ..++. ++.++.+.-..+........ + ...+.+.+ +.++ +.++|+||+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp-~~e~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~~~~~~~~~~-~~~~Dvvf~ 72 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP-DFELVALVSSSRSAGKPLSEVFPHPK---G---FEDLSVEDADPEE-LSDVDVVFL 72 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS-TEEEEEEEESTTTTTSBHHHTTGGGT---T---TEEEBEEETSGHH-HTTESEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCC-CccEEEeeeeccccCCeeehhccccc---c---ccceeEeecchhH-hhcCCEEEe
Confidence 799999 9999999999999853 35654 55665522222222110000 0 01222333 4444 589999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
|+|.....++...+. ++|..||+++.-+
T Consensus 73 a~~~~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 73 ALPHGASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp -SCHHHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred cCchhHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 999988887776663 4688999988644
No 187
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00015 Score=71.55 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=58.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||. |.||.+||..|.++| +.|++|... +.++++.++.||+||
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~g--atVtv~~s~----------------------------t~~l~~~~~~ADIVI 206 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKN--ATVTLTHSR----------------------------TRNLAEVARKADILV 206 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCC--CEEEEECCC----------------------------CCCHHHHHhhCCEEE
Confidence 3689999999 999999999999999 999999321 125777789999999
Q ss_pred Eccchhc-HHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~-~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++... +... ++++|+++|++.
T Consensus 207 ~avg~~~~v~~~------~ik~GavVIDvg 230 (284)
T PRK14179 207 VAIGRGHFVTKE------FVKEGAVVIDVG 230 (284)
T ss_pred EecCccccCCHH------HccCCcEEEEec
Confidence 9998654 3332 378899999985
No 188
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.58 E-value=0.00028 Score=71.91 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=68.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..+..-...+..--.-.+|++|+|++++.+++.+.-.. ....+.++++++++++++|+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG--------PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 478999999999988877665432226899999999988877654211 011356678999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++.....+++. +.+++|+.|..+.
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIG 225 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVG 225 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecC
Confidence 986542222221 4567888766553
No 189
>PLN02494 adenosylhomocysteinase
Probab=97.57 E-value=0.00038 Score=73.05 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=67.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|+|+|+|.+|..+|..+...| .+|+++++++.+.......|. .. .+.+++++.+|+||.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~G~--------------~v-v~leEal~~ADVVI~ 315 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALMEGY--------------QV-LTLEDVVSEADIFVT 315 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhcCC--------------ee-ccHHHHHhhCCEEEE
Confidence 4689999999999999999999777 899999999865444433332 11 146778889999998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
++....+ +..+....++++.+++++..
T Consensus 316 tTGt~~v--I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 316 TTGNKDI--IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCCCccc--hHHHHHhcCCCCCEEEEcCC
Confidence 7665432 11344566888999999876
No 190
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00038 Score=70.26 Aligned_cols=96 Identities=19% Similarity=0.329 Sum_probs=71.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
...++|||+|..+..-...+..--.-.+|.+|+|+++..+++.+.-.. .+...+.++++.++++++||+|+.|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~~~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGGEAVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcCccceeccCHHHHhhcCCEEEEe
Confidence 468999999999999999887643225799999999988877653110 1112356778999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+.. .++ ..+.+++|+.|..+.
T Consensus 203 T~s~~--Pil--~~~~l~~G~hI~aiG 225 (330)
T COG2423 203 TPSTE--PVL--KAEWLKPGTHINAIG 225 (330)
T ss_pred cCCCC--Cee--cHhhcCCCcEEEecC
Confidence 99876 222 135567888877665
No 191
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.56 E-value=0.00032 Score=71.19 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=58.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|+|||+|.+|.+.+..|.....-.+|++|+|++++++++.+.-.. . +...+...+++++++.++|+|+.|
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-~------~g~~v~~~~d~~~al~~aDiVi~a 204 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-E------LGIPVTVARDVHEAVAGADIIVTT 204 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-c------cCceEEEeCCHHHHHccCCEEEEe
Confidence 478999999999999888887532126899999999998888764211 0 011245567888999999999999
Q ss_pred cchh
Q 012596 207 MPVQ 210 (460)
Q Consensus 207 Vp~~ 210 (460)
+|+.
T Consensus 205 T~s~ 208 (330)
T PRK08291 205 TPSE 208 (330)
T ss_pred eCCC
Confidence 9975
No 192
>PLN02602 lactate dehydrogenase
Probab=97.56 E-value=0.00054 Score=69.97 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=65.4
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
+||+|||+|.+|+.+|..|+..+.-.++.++|.++++++.....-.....+.. ...+....+.++ +++||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~---~~~i~~~~dy~~-~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLP---RTKILASTDYAV-TAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCC---CCEEEeCCCHHH-hCCCCEEEECC
Confidence 69999999999999999999887545899999988655433221000000000 123443356666 79999999974
Q ss_pred ch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 208 PV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 208 p~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
-. . .+.++.+.|.++. ++.++|..+|-+
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCch
Confidence 31 1 1233444555543 566777777643
No 193
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.55 E-value=0.00021 Score=73.68 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=66.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|.|||+|.+|...+..+...| .+|+++||++++++.+........+. ...-..++.+.+.++|+||.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~~v~~-------~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGGRIHT-------RYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCceeEe-------ccCCHHHHHHHHccCCEEEEc
Confidence 468999999999999999999988 78999999998877776542110000 000012345667899999999
Q ss_pred cch--hcHHHH-HHHhhhcCCCCCeEEEec
Q 012596 207 MPV--QFSSSF-LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~--~~~~~v-l~~i~~~l~~~~iIV~~~ 233 (460)
++. .....+ -++....++++.+||+++
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 742 111121 234445567889998876
No 194
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.54 E-value=0.00037 Score=73.47 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=59.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil 205 (460)
|+|.|+|+|.+|..++..|.+.| ++|+++++++++++.+.+ .+....+ .+. .-...+.++ +.++|.||+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~~~~~~~~-gd~------~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDRLDVRTVV-GNG------SSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhhcCEEEEE-eCC------CCHHHHHHcCCCcCCEEEE
Confidence 68999999999999999999988 899999999998888765 2221110 110 000123333 678999999
Q ss_pred ccchhcHHHHHHHhhh
Q 012596 206 AMPVQFSSSFLEGISD 221 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~ 221 (460)
+++.......+....+
T Consensus 72 ~~~~~~~n~~~~~~~r 87 (453)
T PRK09496 72 VTDSDETNMVACQIAK 87 (453)
T ss_pred ecCChHHHHHHHHHHH
Confidence 9998776554444433
No 195
>PRK06046 alanine dehydrogenase; Validated
Probab=97.54 E-value=0.00032 Score=71.11 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+|+|||+|.+|...+..|.....-..|.+|+|++++.+++.+.-.. .++..+...++.+++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSS-------VVGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHh-------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence 478999999999999999998543125788999999988877654110 01123455678888886 9999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+.. .+++ .+.+++|+.|..+.
T Consensus 201 Tps~~--P~~~--~~~l~~g~hV~~iG 223 (326)
T PRK06046 201 TPSRK--PVVK--AEWIKEGTHINAIG 223 (326)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecC
Confidence 99753 1111 23457788766654
No 196
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.52 E-value=0.0002 Score=72.14 Aligned_cols=98 Identities=19% Similarity=0.321 Sum_probs=61.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..+++|||+|..|..-+..+...-.-.+|.+|+|++++++++.+.-.. +...+..++|+++++++||+|+.|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~--------~~~~v~~~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD--------LGVPVVAVDSAEEAVRGADIIVTA 199 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC--------CCTCEEEESSHHHHHTTSSEEEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc--------ccccceeccchhhhcccCCEEEEc
Confidence 368999999999999988887642236899999999988887764211 112467788999999999999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+++.....+++ ...+++|+.|..+..
T Consensus 200 T~s~~~~P~~~--~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 200 TPSTTPAPVFD--AEWLKPGTHINAIGS 225 (313)
T ss_dssp ---SSEEESB---GGGS-TT-EEEE-S-
T ss_pred cCCCCCCcccc--HHHcCCCcEEEEecC
Confidence 99765211121 246778888777653
No 197
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.51 E-value=0.0017 Score=66.38 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=63.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH-hhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~-ea~~~aDiVi 204 (460)
|+||+|||+ |.+|..++..|.+.. +++++.+.++.+..+.+.+..... .+. ....+. +.+ ....++|+||
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p-~~elv~v~~~~~~g~~l~~~~~~~---~~~---~~~~~~-~~~~~~~~~vD~Vf 73 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP-EVEIVAVTSRSSAGKPLSDVHPHL---RGL---VDLVLE-PLDPEILAGADVVF 73 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC-CceEEEEECccccCcchHHhCccc---ccc---cCceee-cCCHHHhcCCCEEE
Confidence 589999997 999999999999763 367765544333222232221100 000 001111 121 2346899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+|+|.....++...+.+ .|..||+++..+-.
T Consensus 74 ~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 74 LALPHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred ECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 99999887777666544 57899999876544
No 198
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.51 E-value=0.0012 Score=64.42 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiV 203 (460)
.+||+|||+|+||..++..|.+.+. +.++. +++|++++.+++... +.+.+++++. ...+|+|
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~---------------~~~~~~l~~ll~~~~DlV 66 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR---------------VALLDGLPGLLAWRPDLV 66 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc---------------CcccCCHHHHhhcCCCEE
Confidence 4799999999999999999976431 24444 667777666665432 2345678885 5789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+-|-....+.+....+.. .|.-++.++-|-..+
T Consensus 67 VE~A~~~av~e~~~~iL~---~g~dlvv~SvGALaD 99 (267)
T PRK13301 67 VEAAGQQAIAEHAEGCLT---AGLDMIICSAGALAD 99 (267)
T ss_pred EECCCHHHHHHHHHHHHh---cCCCEEEEChhHhcC
Confidence 999999988888777654 355555566554443
No 199
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.51 E-value=0.00074 Score=70.33 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=68.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
...+|+|+|+|.+|..++..+...| .+|+++++++.+.+.....|. ... +.+++++.+|+||.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G~--------------~~~-~~~e~v~~aDVVI~ 263 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEGY--------------EVM-TMEEAVKEGDIFVT 263 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcCC--------------EEc-cHHHHHcCCCEEEE
Confidence 4679999999999999999999888 799999999887776665553 111 34567789999999
Q ss_pred ccchhcHHHHHH-HhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLE-GISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~-~i~~~l~~~~iIV~~~~ 234 (460)
|+.... ++. .....++++.+++++..
T Consensus 264 atG~~~---~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TTGNKD---IITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCCHH---HHHHHHHhcCCCCcEEEEeCC
Confidence 876433 333 34667888999888764
No 200
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.51 E-value=0.00016 Score=68.06 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=31.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+..||+|+|+|.||+.+|..|++.|. .+++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 35799999999999999999999993 269999988
No 201
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.50 E-value=0.00056 Score=70.75 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=67.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
..++.|||+|-||...|..|.++|. .+|++.+|+.+++..+.++-. . .+...+++.+.+.++|+||.+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~-~----------~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG-A----------EAVALEELLEALAEADVVISS 245 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC-C----------eeecHHHHHHhhhhCCEEEEe
Confidence 4789999999999999999999985 689999999999998887521 0 112234666778999999999
Q ss_pred cchhc--H-HHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQF--S-SSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~--~-~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+.+.. + .+.++...+. ++.-++|++..
T Consensus 246 Tsa~~~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 246 TSAPHPIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cCCCccccCHHHHHHHHhc-ccCeEEEEecC
Confidence 87542 2 3333333221 12246788764
No 202
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.50 E-value=0.00039 Score=68.52 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+++.|+|+|.+|.+++..|++.| ++|++++|+.++++.+.+.-.. .+ .+...+..+....++|+||.|
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g--~~v~v~~R~~~~~~~la~~~~~---~~------~~~~~~~~~~~~~~~DivIna 185 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKAD--CNVIIANRTVSKAEELAERFQR---YG------EIQAFSMDELPLHRVDLIINA 185 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhh---cC------ceEEechhhhcccCccEEEEC
Confidence 578999999999999999999998 8999999998887777653110 00 011211112233579999999
Q ss_pred cchhc---HHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~---~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|..- ..++. -....++++.+++++.-
T Consensus 186 tp~gm~~~~~~~~-~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 186 TSAGMSGNIDEPP-VPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCCCCC-CCHHHcCCCCEEEEecc
Confidence 99742 21110 01234667888998864
No 203
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.48 E-value=0.00057 Score=69.09 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=63.9
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHHH--HHHHHh--hcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPAV--CQSINE--KHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~~r~~~~--~~~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
.+||+|||+ |.+|..+|..|+..|.-. ++.++|..+.. ++.... .+... .+..++.+..+..+.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~------~~~~~~~i~~~~~~~ 75 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF------PLLAEIVITDDPNVA 75 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc------cccCceEEecCcHHH
Confidence 479999999 999999999999877423 79999985421 221111 01100 011123444444456
Q ss_pred cCCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 197 LLGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 197 ~~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+++||+||++--. . .++++.+.|.++.+++.++|.++|-+
T Consensus 76 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 8999999997532 1 13444556666664567777777743
No 204
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.48 E-value=0.00065 Score=68.24 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=63.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCcEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV 203 (460)
|||+|||+ |++|+.+|..|+..+.-.++.++|.+ +++ |...+ +.+-..+..+..+ +|+.+.+++||+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~-----g~alD-L~~~~~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP-----GVAAD-LSHINTPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc-----eeehH-hHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence 69999999 99999999999988754589999987 211 11000 0000011234432 2334568999999
Q ss_pred EEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|++.-. . .+.++.+.|.++ .++.++|..+|-++
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvD 121 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVN 121 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Confidence 987532 1 123344455555 46788888888554
No 205
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.47 E-value=0.0009 Score=67.22 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=62.2
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCcEEEEcc
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHAM 207 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVilaV 207 (460)
||+|||+|.+|..+|..|+..+.-.++.++|.++++++.....-.....+ ....++.+ +.+.+ .+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~---~~~~~~~i~~~~y~-~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATAL---TYSTNTKIRAGDYD-DCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhcc---CCCCCEEEEECCHH-HhCCCCEEEECC
Confidence 79999999999999999998875458999999876543222110000000 00112233 34554 479999999975
Q ss_pred ch----hcH--------------HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 208 PV----QFS--------------SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 208 p~----~~~--------------~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
-. ... +++.+.+.++- ++.+++..+|-+
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv 122 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL 122 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence 32 112 22223344444 567788777744
No 206
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.47 E-value=0.00058 Score=68.93 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCH---HhhcCC
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDA---KTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea~~~ 199 (460)
+|.||+|||+ |.+|+.+|..|+..+...++.++|++....+ .+.. ... ...+...++. .+++++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~--~~~--------~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSH--IDT--------PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhh--cCc--------CceEEEecCCCchHHHhCC
Confidence 5789999999 9999999999996665468999999432211 1111 000 1123333231 467899
Q ss_pred CcEEEEccch--h--------------cHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 200 ADYCLHAMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 200 aDiVilaVp~--~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
||+||++.-. . .+.++++.+.++ .++.+++..+|+++.
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 9999987632 1 122233344443 456688888887664
No 207
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.44 E-value=0.00035 Score=70.21 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+++||+|||+|+||...+..+.++. +.+++ +|++++ +.+. + .. .+....+..+.+.++|+|
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~p-d~ELVgV~dr~~~~~~~---~-~~------------~v~~~~d~~e~l~~iDVV 64 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQP-DMELVGVFSRRGAETLD---T-ET------------PVYAVADDEKHLDDVDVL 64 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCC-CcEEEEEEcCCcHHHHh---h-cC------------CccccCCHHHhccCCCEE
Confidence 4589999999999999999998652 26766 678875 3221 1 11 112234566667889999
Q ss_pred EEccchhc
Q 012596 204 LHAMPVQF 211 (460)
Q Consensus 204 ilaVp~~~ 211 (460)
++|+|+..
T Consensus 65 iIctPs~t 72 (324)
T TIGR01921 65 ILCMGSAT 72 (324)
T ss_pred EEcCCCcc
Confidence 99999754
No 208
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.42 E-value=0.00045 Score=63.21 Aligned_cols=74 Identities=26% Similarity=0.284 Sum_probs=56.9
Q ss_pred CCCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~m-G~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||+|.| |..++..|.+.| .+|++.+|+.+ ++.+.+.++|+||
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r~~~----------------------------~l~~~l~~aDiVI 92 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHSKTK----------------------------NLKEHTKQADIVI 92 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEECCch----------------------------hHHHHHhhCCEEE
Confidence 3589999999997 888999999988 78999998742 3445678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
.++++..+ +-. +.++++.++|++..
T Consensus 93 sat~~~~i--i~~---~~~~~~~viIDla~ 117 (168)
T cd01080 93 VAVGKPGL--VKG---DMVKPGAVVIDVGI 117 (168)
T ss_pred EcCCCCce--ecH---HHccCCeEEEEccC
Confidence 99998542 111 23456788888864
No 209
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.40 E-value=0.0014 Score=66.35 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHHHHHH--hhcCCCccCCCCCCCCceEEeCCHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVCQSIN--EKHCNCRYFPEQKLPENVIATTDAKT 195 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~~r~~--~~~~~l~--~~g~~~~~~~~~~l~~~i~a~~~~~e 195 (460)
+..||+|||+ |.+|..+|..|...+.-. ++.++|..+ ++++... -.+....+. .++.+..+..+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~------~~~~i~~~~~~ 75 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL------AGVVATTDPEE 75 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc------CCcEEecChHH
Confidence 4579999998 999999999999887423 799999854 2222111 111110111 12233334445
Q ss_pred hcCCCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 196 ALLGADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 196 a~~~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
.+++||+||++--. . .++++.++|.++.+++.+++..+|-+
T Consensus 76 ~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 76 AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 68999999987532 1 14455566777765577888777743
No 210
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.40 E-value=0.00078 Score=62.87 Aligned_cols=97 Identities=27% Similarity=0.329 Sum_probs=63.6
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--CC---HHhhcCC
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--TD---AKTALLG 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~--~~---~~ea~~~ 199 (460)
+.+++.|+|+ |.+|..++..|++.| ++|++++|+.++++.+.+.-. ..+ + ..+... .+ ..+++.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~~R~~~~~~~l~~~l~-~~~--~----~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG--ARVVLVGRDLERAQKAADSLR-ARF--G----EGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHH-hhc--C----CcEEEeeCCCHHHHHHHHhc
Confidence 3579999996 999999999999988 899999999988777654310 000 0 011111 12 2456789
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|+||.+++.... .........+++.+++++.
T Consensus 98 ~diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 98 ADVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CCEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence 9999999996553 1111122233466788765
No 211
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.38 E-value=0.00067 Score=68.78 Aligned_cols=94 Identities=20% Similarity=0.353 Sum_probs=66.2
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+++|||+|.+|...+..|.. .+. .+|++|+|++++++++.+.-.. . +...+...++++++++++|+|+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i-~~v~V~~R~~~~a~~~a~~~~~-~------~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDI-RSARIWARDSAKAEALALQLSS-L------LGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCc-cEEEEECCCHHHHHHHHHHHHh-h------cCceEEEeCCHHHHhccCCEEEE
Confidence 4689999999999999999974 442 5799999999988887654110 0 01124456788888999999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
|+|+.. .++. ...+++++.+..+
T Consensus 201 aT~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 201 TTPSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred ecCCCC--cEec--HHHcCCCcEEEee
Confidence 999743 1111 1345677766543
No 212
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.38 E-value=0.0016 Score=64.96 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=61.1
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTAL--- 197 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~--- 197 (460)
||+++||||||+|.+|..+...+.+.. +.++. +++++++.. +..++.|.. ...++.++.+
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~-~velvAVvdid~es~gla~A~~~Gi~-------------~~~~~ie~LL~~~ 66 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSE-HLEPGAMVGIDPESDGLARARRLGVA-------------TSAEGIDGLLAMP 66 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCC-CcEEEEEEeCChhhHHHHHHHHcCCC-------------cccCCHHHHHhCc
Confidence 446689999999999999888887643 25665 778887532 233333321 1123566655
Q ss_pred --CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 198 --LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 198 --~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+.|+||++++.....+......+ .|..+|+.+
T Consensus 67 ~~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~s 101 (302)
T PRK08300 67 EFDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLT 101 (302)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECC
Confidence 468999999998766665544433 467777665
No 213
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.38 E-value=0.00052 Score=71.68 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||.|||+|.||..++..|+..|. .++++++|+.++++.+.+.... ..+...++..+.+.++|+||.|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~----------~~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRN----------ASAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcC----------CeEecHHHHHHHhccCCEEEEC
Confidence 4799999999999999999999883 4799999999988888764210 0112234556778899999999
Q ss_pred cchhc
Q 012596 207 MPVQF 211 (460)
Q Consensus 207 Vp~~~ 211 (460)
+++..
T Consensus 250 T~a~~ 254 (414)
T PRK13940 250 VNVLE 254 (414)
T ss_pred cCCCC
Confidence 98643
No 214
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.34 E-value=0.015 Score=59.61 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=136.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-CccC-CCC------CCCCceE---EeCCHHh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYF-PEQ------KLPENVI---ATTDAKT 195 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~-~~~~-~~~------~l~~~i~---a~~~~~e 195 (460)
|.+|.|+|+|..+--+|..|.+.+ .+.|-+.+|...+.+++-+.-.+ ...+ ... .+...+. +..+.++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~ 79 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEE 79 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHH
Confidence 468999999999999999999876 35799999977665544332110 0000 000 0111111 3457788
Q ss_pred hcCCCcEEEEccchhcHHHHHHHhh-hcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEE---EECcccHH--
Q 012596 196 ALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA---LSGPSFAL-- 269 (460)
Q Consensus 196 a~~~aDiVilaVp~~~~~~vl~~i~-~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v---~~gP~~a~-- 269 (460)
...+.|.+|+|||+++..+|+++|. +.++.=..+|-++..++.. ..+...+.+. +. ...+.. ..|.+...
T Consensus 80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~--~lv~~~l~~~-~~-~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSH--LLVKGFLNDL-GP-DAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchH--HHHHHHHHhc-CC-CceEEEeecccccceeccC
Confidence 8888999999999999999999984 3454445666677666653 2444555443 21 111111 11221111
Q ss_pred -----HHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHH--------HHHHHHHHHHH--HHHhcc
Q 012596 270 -----ELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIA--------GALKNVLAIAA--GIVVGM 332 (460)
Q Consensus 270 -----e~~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~--------kalkNv~ai~~--g~~~~~ 332 (460)
.+..|....+-+|+ .+.....++..+|+..|+.+...+....+|.. .++.|-.++.. +-...-
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 01112222334554 34567899999999999999888876666533 22334333321 111111
Q ss_pred ----cC---C--CcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012596 333 ----NL---G--NNSMAALVAQGCSEIRWLATKMGAKPAT 363 (460)
Q Consensus 333 ----kl---~--~n~~~al~~~~~~E~~~la~a~Gi~~~~ 363 (460)
|+ | ......-+...-.|+..+..++|+++-.
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~N 275 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFN 275 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcch
Confidence 11 1 2344555777889999999999987433
No 215
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.32 E-value=0.0011 Score=66.43 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=64.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCcEEEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCLH 205 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVil 205 (460)
+||+|||+|.+|+++|..|...+...++.++|+.++..+-.... ..+-. ........+.. +.+ .++++|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D---L~~~~-~~~~~~~~i~~~~~y~-~~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD---LSHAA-APLGSDVKITGDGDYE-DLKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc---hhhcc-hhccCceEEecCCChh-hhcCCCEEEE
Confidence 69999999999999999998877656999999985433211110 00000 00111233333 344 4799999999
Q ss_pred cc--chh--------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 206 AM--PVQ--------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 206 aV--p~~--------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+- |.. .+.++.+++.++.+ +.+++..+|-++
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD 122 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVD 122 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHH
Confidence 76 321 13334445555544 677777777544
No 216
>PRK04148 hypothetical protein; Provisional
Probab=97.29 E-value=0.0014 Score=57.57 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+||.+||+| .|..+|..|++.| ++|+.+|.+++.++.+++.+..... .+. +..++ +.-+++|+|--.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~~~~v~-dDl-------f~p~~-~~y~~a~liysi 84 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLGLNAFV-DDL-------FNPNL-EIYKNAKLIYSI 84 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhCCeEEE-CcC-------CCCCH-HHHhcCCEEEEe
Confidence 4789999999 9999999999999 9999999999988888776542110 111 01122 346789999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
=|...+..-+-.+++.+.-+-+|..+++
T Consensus 85 rpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 85 RPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 8987776666677777765555555553
No 217
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.24 E-value=0.0034 Score=64.02 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=63.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCcc--CCCCC--C-CCceEEeCCHHhhcCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRY--FPEQK--L-PENVIATTDAKTALLG 199 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~-g~~~~~--~~~~~--l-~~~i~a~~~~~ea~~~ 199 (460)
|+||||+|+|.||..++..+.+.. +.+|+ +++++++....+.++ |.. .| ++... + ...+.+..+.++...+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~-d~eLvav~d~~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP-DMELVGVAKTKPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC-CcEEEEEECCChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCChhHhhcc
Confidence 479999999999999999988653 36766 455565545444442 321 11 01000 1 1245566677777788
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|+||.|++.....+...... +.|..+|..
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~ 108 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYE---KAGVKAIFQ 108 (341)
T ss_pred CCEEEECCCchhhHHHHHHHH---HCCCEEEEc
Confidence 999999999876665554333 235555543
No 218
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.24 E-value=0.0011 Score=65.88 Aligned_cols=77 Identities=30% Similarity=0.422 Sum_probs=55.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. . .+. ..+...++..+.+.++|+||-|
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~-~-~~~----~~~~~~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNA-R-FPA----ARATAGSDLAAALAAADGLVHA 199 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh-h-CCC----eEEEeccchHhhhCCCCEEEEC
Confidence 4789999999999999999999883 3799999999988887653100 0 000 0122223444556889999999
Q ss_pred cchh
Q 012596 207 MPVQ 210 (460)
Q Consensus 207 Vp~~ 210 (460)
+|..
T Consensus 200 Tp~G 203 (284)
T PRK12549 200 TPTG 203 (284)
T ss_pred CcCC
Confidence 9853
No 219
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.23 E-value=0.0049 Score=58.17 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=55.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||+|.+|...+..|.+.| .+|++++++.. .+..+...+. ..+. .-.-.. +.+.++|+||
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~-i~~~---------~~~~~~-~~l~~adlVi 75 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGK-IRWK---------QKEFEP-SDIVDAFLVI 75 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCC-EEEE---------ecCCCh-hhcCCceEEE
Confidence 3579999999999999999999999 89999987642 3344443321 1110 000012 2367899999
Q ss_pred EccchhcHHHHHHHh
Q 012596 205 HAMPVQFSSSFLEGI 219 (460)
Q Consensus 205 laVp~~~~~~vl~~i 219 (460)
.|+.+..+...+...
T Consensus 76 aaT~d~elN~~i~~~ 90 (202)
T PRK06718 76 AATNDPRVNEQVKED 90 (202)
T ss_pred EcCCCHHHHHHHHHH
Confidence 999988876655444
No 220
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.23 E-value=0.0013 Score=67.14 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=63.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCcEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi 204 (460)
|||+|+|+ |.+|..+.+.|.+.- ..++. ++++++...+.+.+.... +.+. ....+. .+.++...++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP-~~el~~l~~s~~sagk~~~~~~~~---l~~~---~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP-EVEITYLVSSRESAGKPVSEVHPH---LRGL---VDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC-CceEEEEeccchhcCCChHHhCcc---cccc---CCceeecCCHHHhhcCCCEEE
Confidence 68999998 999999999999762 36777 546554222222221110 0010 011121 14455556899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+|+|.....++...+.+ .|..||+++..+-
T Consensus 74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~fR 103 (346)
T TIGR01850 74 LALPHGVSAELAPELLA---AGVKVIDLSADFR 103 (346)
T ss_pred ECCCchHHHHHHHHHHh---CCCEEEeCChhhh
Confidence 99999887777666543 5788999986543
No 221
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.21 E-value=0.0015 Score=66.03 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCCeEEEECcchHH-HHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--Cc
Q 012596 126 RTNKVVVLGGGSFG-TAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG-~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD 201 (460)
+++||||||+|.++ ...+..+.+.+.. .-|.++|+++++++++.+.... + ...+|.++++++ .|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~iD 69 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI---------A---KAYTDLEELLADPDID 69 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCC
Confidence 57899999999555 5678888776511 2366889999998888775211 1 355688888875 69
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+|++++|.....++... .+..|.. |-|-|-+..
T Consensus 70 ~V~Iatp~~~H~e~~~~---AL~aGkh-Vl~EKPla~ 102 (342)
T COG0673 70 AVYIATPNALHAELALA---ALEAGKH-VLCEKPLAL 102 (342)
T ss_pred EEEEcCCChhhHHHHHH---HHhcCCE-EEEcCCCCC
Confidence 99999998765554422 2333443 334555543
No 222
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.21 E-value=0.0018 Score=65.10 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=63.9
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--C-CHHhhcCCCcEEE
Q 012596 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--T-DAKTALLGADYCL 204 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~--~-~~~ea~~~aDiVi 204 (460)
||+|||+ |++|+.+|..|+..+...++.++|+++.. |...+ +.+...+..+..+ + ++.++++++|+||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-------g~a~D-L~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-------GVAAD-LSHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-------EEEch-hhcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 7999999 99999999999988754589999987621 21100 1111111234442 2 2356789999999
Q ss_pred Eccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 205 HAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 205 laVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.-. . .+.++.+.|.++ .++.++|..+|-++
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvD 120 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVN 120 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchh
Confidence 87632 1 123344455555 46788898888554
No 223
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.20 E-value=0.0037 Score=56.55 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..++|.|||+|.+|..-+..|.+.| ++|++++.+ ..+.+.+.+ ..... . ... ...+ +.++|+||.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~--~~~~l~~l~-~i~~~-----~---~~~-~~~d-l~~a~lVia 76 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE--ICKEMKELP-YITWK-----Q---KTF-SNDD-IKDAHLIYA 76 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc--cCHHHHhcc-CcEEE-----e---ccc-Chhc-CCCceEEEE
Confidence 3589999999999999999999999 999999643 334444321 00000 0 000 1222 678999999
Q ss_pred ccchhcHHHHHHHh
Q 012596 206 AMPVQFSSSFLEGI 219 (460)
Q Consensus 206 aVp~~~~~~vl~~i 219 (460)
++.+..+...+...
T Consensus 77 aT~d~e~N~~i~~~ 90 (157)
T PRK06719 77 ATNQHAVNMMVKQA 90 (157)
T ss_pred CCCCHHHHHHHHHH
Confidence 99988776655444
No 224
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.19 E-value=0.0031 Score=72.44 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCe-------------EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-e
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLK-------------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-T 190 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~-------------V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~ 190 (460)
.+++||+|||+|.||...+..|++.. +.+ |++.|++.+.++++.+...+.. .+.. .
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~-~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~---------~v~lDv 636 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVK-TISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE---------AVQLDV 636 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCc-CccccccccccccccEEEEECCCHHHHHHHHHhcCCCc---------eEEeec
Confidence 34679999999999999999999764 133 8899999988887766321100 1222 3
Q ss_pred CCHHhh---cCCCcEEEEccchhcHHHHH
Q 012596 191 TDAKTA---LLGADYCLHAMPVQFSSSFL 216 (460)
Q Consensus 191 ~~~~ea---~~~aDiVilaVp~~~~~~vl 216 (460)
.|.+++ ++++|+||.|+|......++
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP~~~H~~VA 665 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLPASCHAVVA 665 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCCchhhHHHH
Confidence 354443 36799999999976444433
No 225
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.18 E-value=0.00038 Score=65.57 Aligned_cols=261 Identities=14% Similarity=0.117 Sum_probs=137.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH----H-------HHhhcCCCccCCCCCCC---CceEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ----S-------INEKHCNCRYFPEQKLP---ENVIATTD 192 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~----~-------l~~~g~~~~~~~~~~l~---~~i~a~~~ 192 (460)
.-||+|+|.|-+|+.+|..++..| ++|.+||..++++. . +.+.|.- + +.+... .-+..+++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~G--yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~l-r--Gnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSG--YQVQLYDILEKQLQTALENVEKELRKLEEHGLL-R--GNLSADEQLALISGTTS 77 (313)
T ss_pred ccceeEeecccccchHHHHHhccC--ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhh-c--cCccHHHHHHHHhCCcc
Confidence 469999999999999999999999 99999999887542 1 2222210 0 011100 11345678
Q ss_pred HHhhcCCCcEEEEccchh--cHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012596 193 AKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (460)
Q Consensus 193 ~~ea~~~aDiVilaVp~~--~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e 270 (460)
+.|+++++=.|--|+|.. .-..++.++-..+.+.+++-+.+..+.+. ..++-+... .-+.+.-|..+--
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS---~~s~gL~~k------~q~lvaHPvNPPy 148 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPS---KFSAGLINK------EQCLVAHPVNPPY 148 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChH---HHhhhhhhh------hheeEecCCCCCc
Confidence 999999998899999964 23556677777777766665555445443 122222111 1122233321110
Q ss_pred HhccCCeEEEEcc-CCHHHHHHHHHHHhcCCceEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012596 271 LMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (460)
Q Consensus 271 ~~~g~~~~i~i~~-~d~~~~~~l~~lL~~~g~~v~-~~~Di~g~~~~kalkNv~ai~~g~~~~~kl~~n~~~al~~~~~~ 348 (460)
.. -...++.+. ..++.+++-++++.+.|-+.. ....+.|. . - ..+-.+.++
T Consensus 149 fi--PLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf-----~-----------------l---nriq~Ailn 201 (313)
T KOG2305|consen 149 FI--PLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGF-----A-----------------L---NRIQYAILN 201 (313)
T ss_pred cc--chheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccc-----e-----------------e---ccccHHHHH
Confidence 00 001112222 246788999999998875533 33333221 0 0 112245667
Q ss_pred HHHHHHHHcCCCccccccc--cCCCceee---ecccCCCcc----chHHHHhhCCCChHHHHhhcccceehhhhHHHHHH
Q 012596 349 EIRWLATKMGAKPATITGL--SGTGDIML---TCFVNLSRN----RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIA 419 (460)
Q Consensus 349 E~~~la~a~Gi~~~~~~~~--~~~gd~~~---t~~s~~srn----~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~vv~ 419 (460)
|..++...-++...++-.+ .|+|-.+. .+.- ..-| ..+-.+...| +..+.+.||...+.. |-..+.+
T Consensus 202 e~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET-~HLNA~Gv~dYf~Rys~~--I~aV~~t~GpiP~~~-d~~t~~k 277 (313)
T KOG2305|consen 202 ETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLET-AHLNAEGVADYFKRYSAG--ITAVLKTMGPIPDFT-DRKTANK 277 (313)
T ss_pred HHHHHHHccCcchhhHHHHHhcCCCcchhcccchhh-hhcCcHHHHHHHHHhhhh--HHHHHHHcCCCCCCc-chhHHHH
Confidence 8877776655553332111 23332110 0000 0001 0111222221 122344444444432 4567788
Q ss_pred HHHHcCCCChHHH
Q 012596 420 LAQKYNVKMPVLT 432 (460)
Q Consensus 420 lA~~~gv~~P~~~ 432 (460)
++++.+-.+|+-.
T Consensus 278 v~~ql~~~v~~d~ 290 (313)
T KOG2305|consen 278 VAEQLEPKVSLDN 290 (313)
T ss_pred HHHHHhhccCchh
Confidence 8888888888766
No 226
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.14 E-value=0.0017 Score=61.29 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 45799999999999999999999994 4799999873
No 227
>PRK05086 malate dehydrogenase; Provisional
Probab=97.09 E-value=0.0035 Score=63.20 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=61.5
Q ss_pred CeEEEECc-chHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCcEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiV 203 (460)
|||+|||+ |.+|.+++..|.. .+..++++++++++. .+ +...+ +........+.. .+++.+.++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~-----g~alD-l~~~~~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TP-----GVAVD-LSHIPTAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Cc-----ceehh-hhcCCCCceEEEeCCCCHHHHcCCCCEE
Confidence 79999999 9999999998855 333478999998753 11 11000 000000012222 34655678999999
Q ss_pred EEccchh----------------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 204 ilaVp~~----------------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+|.-.. .+.++++.+.++ .++.+++..+|-.+
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 9987421 123344445554 45678888887443
No 228
>PRK11579 putative oxidoreductase; Provisional
Probab=97.08 E-value=0.0045 Score=63.16 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=58.8
Q ss_pred ccCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012596 124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G 199 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~ 199 (460)
|++++||||||+|.||.. .+..+.+.. +.+++ +++++++++. +.. + .+.+++|.+++++ +
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------~------~~~~~~~~~ell~~~~ 64 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTP-GLELAAVSSSDATKVK---ADW------P------TVTVVSEPQHLFNDPN 64 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCC-CCEEEEEECCCHHHHH---hhC------C------CCceeCCHHHHhcCCC
Confidence 334579999999999984 455565532 26666 7888876443 110 0 1235678888885 5
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.|+|++|+|.....++..... +.|..|+ +-|-+.
T Consensus 65 vD~V~I~tp~~~H~~~~~~al---~aGkhVl-~EKPla 98 (346)
T PRK11579 65 IDLIVIPTPNDTHFPLAKAAL---EAGKHVV-VDKPFT 98 (346)
T ss_pred CCEEEEcCCcHHHHHHHHHHH---HCCCeEE-EeCCCC
Confidence 799999999876555443332 2354444 455444
No 229
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.07 E-value=0.0023 Score=58.48 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=49.7
Q ss_pred EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccc
Q 012596 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (460)
Q Consensus 130 I~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp 208 (460)
|.|+|+ |.+|..++..|.+.| ++|+++.|++++.+. ..+. ........ -.++..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--~~~~--~~~~~d~~-----d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--SPGV--EIIQGDLF-----DPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--CTTE--EEEESCTT-----CHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--cccc--ccceeeeh-----hhhhhhhhhhhcchhhhhhh
Confidence 789996 999999999999999 999999999987765 2221 11100000 00234667889999999997
Q ss_pred h
Q 012596 209 V 209 (460)
Q Consensus 209 ~ 209 (460)
.
T Consensus 70 ~ 70 (183)
T PF13460_consen 70 P 70 (183)
T ss_dssp S
T ss_pred h
Confidence 4
No 230
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.07 E-value=0.0026 Score=64.36 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCH--HHHHHHHhhcCCCccCCCC--CCCCceEEeCCHHhhc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDP--AVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTAL 197 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~-----~~V~v~~r~~--~~~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea~ 197 (460)
.||+|+|+ |.+|+.++..|+..+.- .++.++|+++ +.++.... .+.+. .+.....+..+..+.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~------Dl~d~~~~~~~~~~i~~~~~~~~ 74 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM------ELQDCAFPLLKGVVITTDPEEAF 74 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee------ehhhhcccccCCcEEecChHHHh
Confidence 38999999 99999999999986641 2599999986 43221110 00010 0111233444555678
Q ss_pred CCCcEEEEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 198 LGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 198 ~~aDiVilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
++||+||++--. . .++++..+|.++..++.++|.++|-+
T Consensus 75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 999999986522 1 13444556666654667777777644
No 231
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.04 E-value=0.0072 Score=51.10 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=59.5
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCcEEEE
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADYCLH 205 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDiVil 205 (460)
|.|+|.|.+|..++..|.+.+ .+|++++++++.++.+.+.|....+ ++. .+. ++ -++++|.|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~-gd~---------~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIY-GDA---------TDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEE-S-T---------TSHHHHHHTTGGCESEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhccccccc-ccc---------hhhhHHhhcCccccCEEEE
Confidence 679999999999999999965 6999999999999999887743111 110 122 11 2468999999
Q ss_pred ccchhcHHH-HHHHhhhcCCCCCeEEE
Q 012596 206 AMPVQFSSS-FLEGISDYVDPGLPFIS 231 (460)
Q Consensus 206 aVp~~~~~~-vl~~i~~~l~~~~iIV~ 231 (460)
+++.....- ++..+.... +...++.
T Consensus 69 ~~~~d~~n~~~~~~~r~~~-~~~~ii~ 94 (116)
T PF02254_consen 69 LTDDDEENLLIALLARELN-PDIRIIA 94 (116)
T ss_dssp ESSSHHHHHHHHHHHHHHT-TTSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHC-CCCeEEE
Confidence 999765443 333344433 3344443
No 232
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.02 E-value=0.0027 Score=64.35 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCCHH--HHHHHHhhcCCCccCCCC--CCCCceEEeCCHHhh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPA--VCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTA 196 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~-----~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea 196 (460)
..||+|+|+ |.+|+.++..|...+. +.+|.++|+++. .++ |...+ +.+. .+..++....+..++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~-----g~~~D-l~d~~~~~~~~~~~~~~~~~~ 75 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALE-----GVVME-LQDCAFPLLKSVVATTDPEEA 75 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccc-----ceeee-hhhccccccCCceecCCHHHH
Confidence 468999999 9999999999998552 148999999652 121 11100 0010 011234445666677
Q ss_pred cCCCcEEEEccch----hc------------HHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 197 LLGADYCLHAMPV----QF------------SSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 197 ~~~aDiVilaVp~----~~------------~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+++||+||++--. .. +.++.+.|.++.+++.++|..+|-+
T Consensus 76 l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA 131 (325)
T ss_pred hCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH
Confidence 8999999986521 11 2344456666665677777777743
No 233
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.01 E-value=0.0045 Score=63.97 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEE--eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYML--MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~-----~V~v~--~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~ 198 (460)
..||+|||+ |++|..+|..|+..+.-. .++++ |++.++++...-.-.... ..+..++.++++..+.++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a----~~~~~~v~i~~~~y~~~k 119 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSL----YPLLREVSIGIDPYEVFE 119 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhh----hhhcCceEEecCCHHHhC
Confidence 479999999 999999999999877411 24444 777776543322100000 001123554444445689
Q ss_pred CCcEEEEccch----h------------cHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 199 GADYCLHAMPV----Q------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 199 ~aDiVilaVp~----~------------~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+||+||++--. . .++++...|.++.+++.++|.++|-+
T Consensus 120 daDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 120 DADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 99999996422 1 13344455666665777888887744
No 234
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.00 E-value=0.0067 Score=60.20 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=57.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+||||||+|.||..++..+.+.. +.++. +++++++.. +..++.|.. ...++.+++++ +.|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~-~~elvaV~d~d~es~~la~A~~~Gi~-------------~~~~~~e~ll~~~dIDa 67 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSE-HLEMVAMVGIDPESDGLARARELGVK-------------TSAEGVDGLLANPDIDI 67 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCC-CcEEEEEEeCCcccHHHHHHHHCCCC-------------EEECCHHHHhcCCCCCE
Confidence 68999999999999887777543 25655 678887642 222223321 12346666654 5899
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|++++|.....+...... +.|..+++..
T Consensus 68 V~iaTp~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 68 VFDATSAKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred EEECCCcHHHHHHHHHHH---HcCCEEEECC
Confidence 999999876655544433 3466666543
No 235
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.99 E-value=0.0032 Score=64.09 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+|.|||+|.+|+.+|..|+++|. ..++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 45799999999999999999999994 3799999875
No 236
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.99 E-value=0.0034 Score=62.16 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.+++.|+|+|.+|.+++..|+..|. .+|++++|+.++++.+.+..... . .+....+..+.+.++|+||-|
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~---~------~~~~~~~~~~~~~~~DivIna 192 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL---G------KAELDLELQEELADFDLIINA 192 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc---c------ceeecccchhccccCCEEEEC
Confidence 4689999999999999999998873 58999999999888876642110 0 011111333556789999999
Q ss_pred cchhcHHH--HHHHhhhcCCCCCeEEEec
Q 012596 207 MPVQFSSS--FLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 207 Vp~~~~~~--vl~~i~~~l~~~~iIV~~~ 233 (460)
+|..-... ...-....++++..++++.
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 99643211 0000113345677777775
No 237
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.97 E-value=0.0025 Score=65.90 Aligned_cols=100 Identities=20% Similarity=0.356 Sum_probs=63.4
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
++|||+|+|+ |..|..+.+.|.++. .++|+.+.+++..-+.+...+.... +.... .+.. .+..+ ++++|+||
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~l~---~~~~~-~~~~-~~~~~-~~~~DvVf 109 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPHLI---TQDLP-NLVA-VKDAD-FSDVDAVF 109 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCcccc---Ccccc-ceec-CCHHH-hcCCCEEE
Confidence 3579999996 999999999999873 3789988886543322222221100 01111 0111 12222 47899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCC
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+|+|.....+++..+ ..+..||+++.-.
T Consensus 110 ~Alp~~~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 110 CCLPHGTTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred EcCCHHHHHHHHHHH----hCCCEEEEcCchh
Confidence 999998666666554 3578899987543
No 238
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.96 E-value=0.0043 Score=66.19 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=67.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCc-eEEe-CC--------H
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIAT-TD--------A 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~---l~~~-i~a~-~~--------~ 193 (460)
..|+.|+|+|.+|...+..+...| ..|++++++.++.+.+++.|.....++... -... .+.. .+ .
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 369999999999999999999888 789999999988877776654321111000 0000 0111 11 2
Q ss_pred HhhcCCCcEEEEcc-----chhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 194 KTALLGADYCLHAM-----PVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 194 ~ea~~~aDiVilaV-----p~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+.++++|+||.++ |... =+.++..+.+++|.+||+++
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCCCCEEEEee
Confidence 34467899999988 3321 12344566788899999875
No 239
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.95 E-value=0.0027 Score=65.67 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=49.9
Q ss_pred EEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEe--CCHHhhcCCCcEEE
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIAT--TDAKTALLGADYCL 204 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~--g~~~~~~~~~~l~~~i~a~--~~~~ea~~~aDiVi 204 (460)
|.|+|+|.+|..++..|++.+. + +|++.+|+.++++++.+. +.+.... .+.+. .++.++++++|+||
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~-~~~v~va~r~~~~~~~~~~~~~~~~~~~~-------~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP-FEEVTVADRNPEKAERLAEKLLGDRVEAV-------QVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC-E-EEEEEESSHHHHHHHHT--TTTTEEEE-------E--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCC-CCcEEEEECCHHHHHHHHhhccccceeEE-------EEecCCHHHHHHHHhcCCEEE
Confidence 7899999999999999999862 3 899999999998888753 2111110 00011 12456788999999
Q ss_pred Eccchhc
Q 012596 205 HAMPVQF 211 (460)
Q Consensus 205 laVp~~~ 211 (460)
-|++...
T Consensus 73 n~~gp~~ 79 (386)
T PF03435_consen 73 NCAGPFF 79 (386)
T ss_dssp E-SSGGG
T ss_pred ECCccch
Confidence 9998653
No 240
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.95 E-value=0.0028 Score=64.41 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=58.1
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCC
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~a 200 (460)
|++|+||+|+|+ |.+|.-+.+.|.+.++. .++..+... +.+ |.... +.+. .+.+.. +..+ ++++
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a------G~~l~-~~~~----~l~~~~~~~~~-~~~v 67 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA------GHSVP-FAGK----NLRVREVDSFD-FSQV 67 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC------CCeec-cCCc----ceEEeeCChHH-hcCC
Confidence 456789999996 99999999999976621 233344332 211 21111 1111 122221 2233 4789
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++|+++|......++..+.+ .|..+|+++.
T Consensus 68 D~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~ 98 (336)
T PRK05671 68 QLAFFAAGAAVSRSFAEKARA---AGCSVIDLSG 98 (336)
T ss_pred CEEEEcCCHHHHHHHHHHHHH---CCCeEEECch
Confidence 999999997655555555433 4778999875
No 241
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.93 E-value=0.0027 Score=62.88 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=57.6
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||.|. +|.++|..|.+.| ..|+++.+.. .++.+.++.||+||
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~g--atVtv~~s~t----------------------------~~l~~~~~~ADIVI 206 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKN--ASVTILHSRS----------------------------KDMASYLKDADVIV 206 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHHhhCCEEE
Confidence 358999999988 9999999999888 8999988643 14556678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ +. ..++++++++|++.
T Consensus 207 sAvg~p~~---i~--~~~vk~gavVIDvG 230 (286)
T PRK14175 207 SAVGKPGL---VT--KDVVKEGAVIIDVG 230 (286)
T ss_pred ECCCCCcc---cC--HHHcCCCcEEEEcC
Confidence 99987542 11 13467899999875
No 242
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.92 E-value=0.0036 Score=64.73 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=67.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+++|||+|..|..-...++.-.. -.+|.+|+|++++++++.++-.. .+++. ..+.++++.++++++||+|+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~--~~~~~---~~v~~~~s~~eav~~ADIVvt 229 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE--TYPQI---TNVEVVDSIEEVVRGSDIVTY 229 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH--hcCCC---ceEEEeCCHHHHHcCCCEEEE
Confidence 4789999999999999998876321 15899999999988877653210 01110 125677899999999999999
Q ss_pred ccchhc----HHHHHHHhhhcCCCCCeEEE
Q 012596 206 AMPVQF----SSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 206 aVp~~~----~~~vl~~i~~~l~~~~iIV~ 231 (460)
|+++.. ...+++ .+.+++|+.|+.
T Consensus 230 aT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 230 CNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred ccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 997532 112221 245678877764
No 243
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.91 E-value=0.0046 Score=65.15 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=63.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH----hhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK----TALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~----ea~~~aDi 202 (460)
+++|.|+|+|.+|..++..|.+.| ++|++++++++.++.+.+.+.....+.+. .++.+ ..++++|.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~~~~~~~i~gd--------~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG--YSVKLIERDPERAEELAEELPNTLVLHGD--------GTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHCCCCeEEECC--------CCCHHHHHhcCCccCCE
Confidence 589999999999999999999988 89999999999888887754221111000 01221 12468999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEE
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFI 230 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV 230 (460)
|+++++.....-++..+...+....+++
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 9999987654444433444444444443
No 244
>PLN00106 malate dehydrogenase
Probab=96.90 E-value=0.0045 Score=62.58 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCCC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~a 200 (460)
..||+|||+ |.+|+.+|..|+..+...++.++|+++...+ .+.... ....+.. .+|..++++++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~----------~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHIN----------TPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCC----------cCceEEEEeCCCCHHHHcCCC
Confidence 469999999 9999999999997775458999998762111 111100 0112332 23456778999
Q ss_pred cEEEEccch-----h-----------cHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 201 DYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 201 DiVilaVp~-----~-----------~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
|+||++.-. . .+.++++.+.++- ++.+++..+|-++
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD 139 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN 139 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence 999996531 1 1223334444443 6778888888655
No 245
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.86 E-value=0.0034 Score=62.34 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=54.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV 203 (460)
.+++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. . ..+... ++..+.+.++|+|
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~-~--------~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQ-V--------GVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhh-c--------CcceeccchhhhhhcccCCCEE
Confidence 4789999999999999999999883 4799999999998888764210 0 001111 1233455789999
Q ss_pred EEccchh
Q 012596 204 LHAMPVQ 210 (460)
Q Consensus 204 ilaVp~~ 210 (460)
|-|+|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999964
No 246
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.86 E-value=0.0041 Score=57.26 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999994 3699999886
No 247
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.86 E-value=0.0049 Score=61.70 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=60.8
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccch--
Q 012596 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-- 209 (460)
Q Consensus 132 IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-- 209 (460)
|||+|.+|..+|..|+..+.-.++.++|++.++++.....-..... .++.++.+..+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS----FLPTPKKIRSGDYSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc----ccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence 6999999999999999887545799999987654433221000000 0112233333333558999999997532
Q ss_pred --h------------cHHHHHHHhhhcCCCCCeEEEeccC
Q 012596 210 --Q------------FSSSFLEGISDYVDPGLPFISLSKG 235 (460)
Q Consensus 210 --~------------~~~~vl~~i~~~l~~~~iIV~~~~G 235 (460)
. .+.++.+.|.++ .++.+++..+|-
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 133444556554 466778877763
No 248
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.85 E-value=0.002 Score=61.22 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+|+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 45799999999999999999999995 4699999883
No 249
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.85 E-value=0.0059 Score=49.27 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR 160 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r 160 (460)
..++++|+|+|.+|..++..|.+.+ ..+|++|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 3579999999999999999999984 268888876
No 250
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.013 Score=59.09 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=86.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCcEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVi 204 (460)
|+||+|+| .|.-|.-+.+.|+.+. +.++..+..+...-+.+.+.+.+.....+ ++ +.. -+.++. ..+||+||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp-~ve~~~~ss~~~~g~~~~~~~p~l~g~~~--l~--~~~-~~~~~~~~~~~DvvF 75 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHP-DVELILISSRERAGKPVSDVHPNLRGLVD--LP--FQT-IDPEKIELDECDVVF 75 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCC-CeEEEEeechhhcCCchHHhCcccccccc--cc--ccc-CChhhhhcccCCEEE
Confidence 68999999 6999999999999764 35666666554333344443333221111 11 111 133332 45699999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCC-----CEEEEECcccHHHHhccCCeEE
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-----PFIALSGPSFALELMNKLPTAM 279 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~-----~~~v~~gP~~a~e~~~g~~~~i 279 (460)
+|+|.....+++.++.. .+..||+++.-.-.... +.-++..|.... .-.+.+=|..-.+-.++..-.-
T Consensus 76 lalPhg~s~~~v~~l~~---~g~~VIDLSadfR~~d~----~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIA 148 (349)
T COG0002 76 LALPHGVSAELVPELLE---AGCKVIDLSADFRLKDP----EVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIA 148 (349)
T ss_pred EecCchhHHHHHHHHHh---CCCeEEECCcccccCCH----HHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEee
Confidence 99999887777666543 46669999864433211 122222232110 1122223443332222221111
Q ss_pred EEccCCHHHHHHHHHHHhc
Q 012596 280 VVASKDRKLANAVQQLLAS 298 (460)
Q Consensus 280 ~i~~~d~~~~~~l~~lL~~ 298 (460)
..|+-.+...-.+.++++.
T Consensus 149 nPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 149 NPGCYPTAAILALAPLVKA 167 (349)
T ss_pred CCCchHHHHHHHHHHHHHc
Confidence 2445566777788899886
No 251
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.83 E-value=0.0061 Score=66.35 Aligned_cols=93 Identities=12% Similarity=0.269 Sum_probs=64.2
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDiV 203 (460)
-+|.|+|+|.+|..+++.|.+.| ++|+++|.|+++++.+++.|.+..+ .|. ++. ++ -++++|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~g~~~i~-GD~---------~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRERGIRAVL-GNA---------ANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHCCCeEEE-cCC---------CCHHHHHhcCccccCEE
Confidence 57999999999999999999999 9999999999999998876542111 110 122 11 14689999
Q ss_pred EEccchhcHH-HHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQFSS-SFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~~~-~vl~~i~~~l~~~~iIV~~~ 233 (460)
+++++++... .++..+.... ++..++.-.
T Consensus 486 iv~~~~~~~~~~iv~~~~~~~-~~~~iiar~ 515 (558)
T PRK10669 486 LLTIPNGYEAGEIVASAREKR-PDIEIIARA 515 (558)
T ss_pred EEEcCChHHHHHHHHHHHHHC-CCCeEEEEE
Confidence 9999876533 3444444433 444555443
No 252
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.82 E-value=0.007 Score=66.47 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---h-hcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---T-ALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~---e-a~~~aDi 202 (460)
.++|.|+|.|.+|..+++.|.+.| ++++++|.|+++++.+++.|... +++|. ++++ + -+++||.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~ 467 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK--MRITVLERDISAVNLMRKYGYKV-YYGDA---------TQLELLRAAGAEKAEA 467 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhCCCeE-EEeeC---------CCHHHHHhcCCccCCE
Confidence 468999999999999999999998 89999999999999988766432 22211 1221 1 1468999
Q ss_pred EEEccchhcHH-HHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSS-SFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~-~vl~~i~~~l~~~~iIV~~~ 233 (460)
++++++++... .++..+++.. |+..|+.-.
T Consensus 468 vv~~~~d~~~n~~i~~~~r~~~-p~~~IiaRa 498 (601)
T PRK03659 468 IVITCNEPEDTMKIVELCQQHF-PHLHILARA 498 (601)
T ss_pred EEEEeCCHHHHHHHHHHHHHHC-CCCeEEEEe
Confidence 99999987544 4444445443 454555433
No 253
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.77 E-value=0.0042 Score=66.25 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=53.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+.++++|+|+|.+|.+++..|++.| .+|++++|+.++++.+.+.. +.. .....+..+ +.++|+||.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G--~~V~i~~R~~~~~~~la~~~-~~~----------~~~~~~~~~-l~~~DiVIn 396 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAG--AELLIFNRTKAHAEALASRC-QGK----------AFPLESLPE-LHRIDIIIN 396 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh-ccc----------eechhHhcc-cCCCCEEEE
Confidence 3578999999999999999999999 89999999998887776531 100 000112222 468999999
Q ss_pred ccchhc
Q 012596 206 AMPVQF 211 (460)
Q Consensus 206 aVp~~~ 211 (460)
|+|...
T Consensus 397 atP~g~ 402 (477)
T PRK09310 397 CLPPSV 402 (477)
T ss_pred cCCCCC
Confidence 999653
No 254
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.1 Score=52.10 Aligned_cols=229 Identities=15% Similarity=0.175 Sum_probs=132.2
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC--CCccCCCC-----CCCCceE---EeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQ-----KLPENVI---ATTDA 193 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~--~~~~~~~~-----~l~~~i~---a~~~~ 193 (460)
|+.|.++.++|+|...--+|.-|...| +..+-+++|...+-+++.+.-. ...++.+. .+..++. ...++
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~ 79 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDL 79 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhH
Confidence 345789999999999999999999988 3678888876544444433210 01122111 0111121 23578
Q ss_pred HhhcCCCcEEEEccchhcHHHHHHHhh-hcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEE---------
Q 012596 194 KTALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS--------- 263 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~~~~vl~~i~-~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~--------- 263 (460)
+++..+.+-+|+|||+++..+++++|- +.++.-+.+|.++..++.. ..+...+. .+|. .+.|++
T Consensus 80 a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn--~lv~~~mn-k~~~---daeViS~SsY~~dTk 153 (431)
T COG4408 80 AQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSN--LLVQNLMN-KAGR---DAEVISLSSYYADTK 153 (431)
T ss_pred HHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEeccccccc--HHHHHHHh-hhCC---CceEEEeehhcccce
Confidence 888889999999999999999999873 4444333444444445433 12222332 2342 222221
Q ss_pred -----CcccHHHHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHH--------HHHHHHHHHHH
Q 012596 264 -----GPSFALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA--------LKNVLAIAAGI 328 (460)
Q Consensus 264 -----gP~~a~e~~~g~~~~i~i~~--~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ka--------lkNv~ai~~g~ 328 (460)
-|.++-.- +....+-+|+ ++...++.+..+|...|+.+...+.....|-... +.|-.++. .+
T Consensus 154 ~id~~~p~~alTk--avKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~-ai 230 (431)
T COG4408 154 YIDAEQPNRALTK--AVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQ-AI 230 (431)
T ss_pred eecccCcchHHHH--HHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHH-HH
Confidence 13332211 1111234554 3567789999999999999998887666553221 12222221 11
Q ss_pred Hhcc-------cC-----CCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012596 329 VVGM-------NL-----GNNSMAALVAQGCSEIRWLATKMGAKPA 362 (460)
Q Consensus 329 ~~~~-------kl-----~~n~~~al~~~~~~E~~~la~a~Gi~~~ 362 (460)
-... |+ ....+..-++..-.|+.++..++|+.+-
T Consensus 231 f~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~i 276 (431)
T COG4408 231 FYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEI 276 (431)
T ss_pred hCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 1111 11 1234455567777999999999998743
No 255
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.66 E-value=0.0049 Score=62.68 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=60.5
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+|||+|+| .|..|..+.+.|++.++. .++..+.+.++.-+.+.- .+ ..+...+...+.++++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~--------~g----~~i~v~d~~~~~~~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF--------KG----KELKVEDLTTFDFSGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee--------CC----ceeEEeeCCHHHHcCCCEEE
Confidence 47999999 799999999999997731 245777665432222211 11 11222221122357899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|.....++...+.+ .|..||+++.
T Consensus 69 ~A~g~g~s~~~~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAA---AGAVVIDNSS 95 (334)
T ss_pred ECCChHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999887777665533 5778998875
No 256
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.66 E-value=0.0067 Score=58.25 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|+|+|.+|+.+|..|++.|. .+++++|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 35799999999999999999999995 4788887664
No 257
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.66 E-value=0.0037 Score=57.40 Aligned_cols=70 Identities=16% Similarity=0.294 Sum_probs=47.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||+||| .|..|+.+..-..++| |+|+.+.|++.+.... ++.... ...+.--+...+.+.+.|+||.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG--HeVTAivRn~~K~~~~--~~~~i~-------q~Difd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG--HEVTAIVRNASKLAAR--QGVTIL-------QKDIFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC--CeeEEEEeChHhcccc--ccceee-------cccccChhhhHhhhcCCceEEEe
Confidence 7999999 6999999999999999 9999999999766432 221110 00011001223456778888877
Q ss_pred cc
Q 012596 207 MP 208 (460)
Q Consensus 207 Vp 208 (460)
.-
T Consensus 70 ~~ 71 (211)
T COG2910 70 FG 71 (211)
T ss_pred cc
Confidence 64
No 258
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.66 E-value=0.0087 Score=51.31 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=54.1
Q ss_pred CeEEEEC----cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLG----GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIG----aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
++|+||| .|.+|..+...|.++| ++|+.++.....+ .++....++.|.-...|++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G--~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDla 59 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG--YEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLA 59 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC--CEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEE
Confidence 4799999 7999999999999988 8999887654211 1345566777733789999
Q ss_pred EEccchhcHHHHHHHhhhc
Q 012596 204 LHAMPVQFSSSFLEGISDY 222 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~ 222 (460)
++++|...+.++++++...
T Consensus 60 vv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 60 VVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp EE-S-HHHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHc
Confidence 9999999999999988764
No 259
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.61 E-value=0.005 Score=64.74 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=64.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~--------G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea 196 (460)
+++||+|+|+|.||..++..|.++ |.+.+|. +++|+.++.+ +.. . ....+++|.++.
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~-----~~~--------~-~~~~~~~d~~~l 67 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR-----GVD--------L-PGILLTTDPEEL 67 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc-----CCC--------C-cccceeCCHHHH
Confidence 458999999999999999988654 2124443 6788865432 110 0 113456788887
Q ss_pred cC--CCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 197 LL--GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 197 ~~--~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
+. +.|+|+.+++... ..+. +...++.|.-+|+..+.........+.+..+
T Consensus 68 l~d~~iDvVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~ 120 (426)
T PRK06349 68 VNDPDIDIVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAE 120 (426)
T ss_pred hhCCCCCEEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHH
Confidence 75 4799999987532 2222 3344556777776655443332333434433
No 260
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.61 E-value=0.016 Score=59.20 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=59.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCC----------HHHHHHHHhhcCCCccCCCCCCCCce
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENV 187 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~--------G~~~~V~-v~~r~----------~~~~~~l~~~g~~~~~~~~~~l~~~i 187 (460)
.+||+|+|+|.||..++..|.+. |.+.+|+ ++|++ .+.+....+.......+ + ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~-----~-~~ 75 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADY-----P-EG 75 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccC-----c-cc
Confidence 47999999999999999999765 3225555 55653 22333332221111101 0 01
Q ss_pred EEeCCHHhhc--CCCcEEEEccchhcH--HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 188 IATTDAKTAL--LGADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 188 ~a~~~~~ea~--~~aDiVilaVp~~~~--~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
..+.+.++++ .+.|+|+.|+|+... +...+.+...+..|..||+..++.
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~p 128 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGP 128 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHH
Confidence 1234677766 368999999997432 222233344555677777765543
No 261
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.60 E-value=0.0026 Score=58.14 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCC----------C-ceEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLP----------E-NVIATTDAK 194 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~-~~~l~----------~-~i~a~~~~~ 194 (460)
..||.|+|+|+.|..-+..|..-| .+|+.++..++..+.+...+....... ..... . .......+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 479999999999999999999988 999999999988777766543211110 00000 0 000112345
Q ss_pred hhcCCCcEEEEccc--hhcHHHHH-HHhhhcCCCCCeEEEec
Q 012596 195 TALLGADYCLHAMP--VQFSSSFL-EGISDYVDPGLPFISLS 233 (460)
Q Consensus 195 ea~~~aDiVilaVp--~~~~~~vl-~~i~~~l~~~~iIV~~~ 233 (460)
+.++.+|+||.+.- ......++ ++..+.++++.+|++++
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 56778999998654 32233322 34445567899999986
No 262
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.57 E-value=0.0036 Score=67.90 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+..||.|+|+|.+|+..|..|++.|. .+++++|.+
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GV-g~ItlVD~D 371 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGV-RHITFVDNG 371 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCC
Confidence 35799999999999999999999996 367788754
No 263
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.57 E-value=0.032 Score=52.73 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||.|.+|..-+..|.+.| .+|++++.+.. .++.+.+.| +.....+ .-... .+.++|+||.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~~-~i~~~~~---------~~~~~-dl~~~~lVi~ 75 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQG-GITWLAR---------CFDAD-ILEGAFLVIA 75 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHcC-CEEEEeC---------CCCHH-HhCCcEEEEE
Confidence 579999999999999999999999 89999987653 445555543 1111000 00222 3678999999
Q ss_pred ccchhcHHH
Q 012596 206 AMPVQFSSS 214 (460)
Q Consensus 206 aVp~~~~~~ 214 (460)
++....+..
T Consensus 76 at~d~~ln~ 84 (205)
T TIGR01470 76 ATDDEELNR 84 (205)
T ss_pred CCCCHHHHH
Confidence 988764433
No 264
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.54 E-value=0.013 Score=56.17 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCC----HHHH-------HHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRD----PAVC-------QSINEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~--~V~v~~r~----~~~~-------~~l~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
.+||.|+|+|.+|..++..|.+.|. . +|+++||+ .++. +.+.+.. + . ... ..++
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~-----~----~~~--~~~l 91 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-N-----P----EKT--GGTL 91 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-c-----c----Ccc--cCCH
Confidence 4799999999999999999999883 3 69999998 3332 2222210 0 0 001 1256
Q ss_pred HhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEecc
Q 012596 194 KTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
.++++++|++|-+++... .+++++.+ .++.+++.++|
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~~~~l~~m----~~~~ivf~lsn 129 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVKKEMIKKM----AKDPIVFALAN 129 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCCHHHHHhh----CCCCEEEEeCC
Confidence 567788999999997332 23444333 35667777775
No 265
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.53 E-value=0.0063 Score=60.24 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=57.9
Q ss_pred CCCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~m-G~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+|||.|.+ |.+++..|.+.| ..|+++.... .++.+.++.+|+||
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVt~~hs~t----------------------------~~l~~~~~~ADIVV 206 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAG--ATVTICHSKT----------------------------RDLAAHTRQADIVV 206 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEecCCC----------------------------CCHHHHhhhCCEEE
Confidence 3689999999998 999999999988 8999875321 25667789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++.... +. ..++++|+++|++.
T Consensus 207 ~avG~~~~---i~--~~~ik~gavVIDVG 230 (285)
T PRK14189 207 AAVGKRNV---LT--ADMVKPGATVIDVG 230 (285)
T ss_pred EcCCCcCc---cC--HHHcCCCCEEEEcc
Confidence 99995442 21 26678999999875
No 266
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.50 E-value=0.01 Score=60.06 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCHHH--HHHHHhhcCCCccCCCC--CCCCceEEeCCHHhhcC
Q 012596 129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDPAV--CQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALL 198 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~G~~-----~~V~v~~r~~~~--~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea~~ 198 (460)
||+|||+ |.+|+.+|..|+..+.- .++.++|+++.. ++.... .+.+. .+...+..+++..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~------Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM------ELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe------ehhcccchhcCceeccCChHHHhC
Confidence 6999999 99999999999976631 159999986432 211100 00000 01112333334445689
Q ss_pred CCcEEEEccch----hc------------HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 199 GADYCLHAMPV----QF------------SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 199 ~aDiVilaVp~----~~------------~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
+||+||++--. .. ++++.+.|.++..++.++|..+|-++
T Consensus 75 ~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 75 DVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 99999986532 11 33444556665446677777777443
No 267
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.48 E-value=0.0057 Score=61.44 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=50.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||.|.| .|.+|+.++..|.++| ++|++.+|+.+....+...+..... .+ +.-.++..++++++|+||.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~~~~~l~~~~v~~v~-~D------l~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLRKASFLKEWGAELVY-GD------LSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChHHhhhHhhcCCEEEE-CC------CCCHHHHHHHHCCCCEEEEC
Confidence 6899999 5999999999999999 9999999987655444333321100 01 11112356678899999987
Q ss_pred cc
Q 012596 207 MP 208 (460)
Q Consensus 207 Vp 208 (460)
+.
T Consensus 72 ~~ 73 (317)
T CHL00194 72 ST 73 (317)
T ss_pred CC
Confidence 65
No 268
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.029 Score=54.47 Aligned_cols=145 Identities=20% Similarity=0.224 Sum_probs=85.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~-v~~r~~~~~--~~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+|||+|.|+ |+||..+.+.+.+.. +.++. .++|..... ....+ .|.. +..+.+++++.....++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~~g~d~ge~~g~~---------~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLSLGSDAGELAGLG---------LLGVPVTDDLLLVKADAD 71 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccccccchhhhcccc---------ccCceeecchhhcccCCC
Confidence 689999998 999999999999875 35544 567765311 00000 0110 113445566777778999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~gP~~a~e~~~g~~~~i~i 281 (460)
++|=.+-...+.+.++...+ .+..+|.-++|+..+..+.+.+..++ +.++.+|++.--+. +
T Consensus 72 V~IDFT~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~l~~~a~~--------v~vv~a~NfSiGvn--------l 132 (266)
T COG0289 72 VLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQLEKLREAAEK--------VPVVIAPNFSLGVN--------L 132 (266)
T ss_pred EEEECCCchhhHHHHHHHHH---cCCCeEEECCCCCHHHHHHHHHHHhh--------CCEEEeccchHHHH--------H
Confidence 99965544544444433332 35566777889998764444444332 24667777654210 0
Q ss_pred ccCCHHHHHHHHHHHhcCCceEEE
Q 012596 282 ASKDRKLANAVQQLLASKHLRIST 305 (460)
Q Consensus 282 ~~~d~~~~~~l~~lL~~~g~~v~~ 305 (460)
-....++..++|. ++.++.
T Consensus 133 ---l~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 133 ---LFKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred ---HHHHHHHHHHhcC--CCCEEe
Confidence 1245677777777 455543
No 269
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.47 E-value=0.017 Score=61.77 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=68.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC--CC-CCCc-eE-EeCCH--------
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE--QK-LPEN-VI-ATTDA-------- 193 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~--~~-l~~~-i~-a~~~~-------- 193 (460)
..||.|+|+|.+|...+..+...| .+|+++|+++++.+...+.|......+. .. .... ++ .+.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 579999999999999988888888 7899999999988888877653111100 00 0000 00 11111
Q ss_pred HhhcCCCcEEEEccchhc--HHHH-HHHhhhcCCCCCeEEEec
Q 012596 194 KTALLGADYCLHAMPVQF--SSSF-LEGISDYVDPGLPFISLS 233 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~~~--~~~v-l~~i~~~l~~~~iIV~~~ 233 (460)
.+.++++|+||.|+-... ...+ .++..+.++++..|+++.
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122357999999986432 2233 366667788899888875
No 270
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.46 E-value=0.0099 Score=59.02 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=55.7
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||.|. +|.+++..|.+.| ..|++++|... ++.+.++++|+||
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~g--atVtv~~~~t~----------------------------~L~~~~~~aDIvI 207 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNAN--ATVTICHSRTQ----------------------------NLPELVKQADIIV 207 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC--CEEEEEeCCch----------------------------hHHHHhccCCEEE
Confidence 457999999998 9999999999988 79999987321 3445568999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++... .+. .+.++++++++++.
T Consensus 208 ~AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 208 GAVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred EccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 9996322 111 24577899998874
No 271
>PRK08328 hypothetical protein; Provisional
Probab=96.44 E-value=0.0089 Score=57.59 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+..||.|+|+|.+|+.++..|++.|. .+++++|.+.-....++
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTPELSNLN 68 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCccChhhhc
Confidence 35789999999999999999999996 47999998764444443
No 272
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.44 E-value=0.013 Score=64.69 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=65.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH----hhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK----TALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~----ea~~~aDi 202 (460)
..+|.|+|.|.+|..+++.|.++| .+++++|.|+++++.+++.|... +++|. ++++ .-++++|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRKFGMKV-FYGDA---------TRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhcCCeE-EEEeC---------CCHHHHHhcCCCcCCE
Confidence 468999999999999999999998 89999999999999998876432 22221 1221 12458999
Q ss_pred EEEccchhcHH-HHHHHhhhcCCCCCeEEE
Q 012596 203 CLHAMPVQFSS-SFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 203 VilaVp~~~~~-~vl~~i~~~l~~~~iIV~ 231 (460)
+++++.++... .++..++++. |+..++.
T Consensus 468 vvv~~~d~~~n~~i~~~ar~~~-p~~~iia 496 (621)
T PRK03562 468 LINAIDDPQTSLQLVELVKEHF-PHLQIIA 496 (621)
T ss_pred EEEEeCCHHHHHHHHHHHHHhC-CCCeEEE
Confidence 99999976543 3444444443 4444444
No 273
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.43 E-value=0.011 Score=60.20 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=62.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..++|.|+|+ |.||+.+++.|++. |. .++++++|+.++++.+.++.... .+ .+..+++.++|+|
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv-~~lilv~R~~~rl~~La~el~~~------------~i-~~l~~~l~~aDiV 219 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGV-AELLLVARQQERLQELQAELGGG------------KI-LSLEEALPEADIV 219 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCC-CEEEEEcCCHHHHHHHHHHhccc------------cH-HhHHHHHccCCEE
Confidence 3579999999 89999999999854 42 58999999988777776532100 01 2566788899999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+.++...... ++. ...++++.+++++.
T Consensus 220 v~~ts~~~~~-~I~--~~~l~~~~~viDiA 246 (340)
T PRK14982 220 VWVASMPKGV-EID--PETLKKPCLMIDGG 246 (340)
T ss_pred EECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence 9887653210 010 02235678888876
No 274
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.43 E-value=0.0048 Score=61.01 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=67.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.-||+|||.|.+|+--|+...--| -+|++.|++.+++..+..... +..+ ...-...+++++..+|+||-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~~rv~~--------~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFGGRVHT--------LYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhCceeEE--------EEcCHHHHHHHhhhccEEEE
Confidence 368999999999999888887555 899999999887766554311 1000 00011356778899999997
Q ss_pred ccc--h-hcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMP--V-QFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp--~-~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
+|- - .+-.=+.+++.+.++||++||++.
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 763 2 222334566677789999999874
No 275
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.40 E-value=0.0035 Score=58.08 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=48.0
Q ss_pred eEEEECcchHHHHH--HHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 129 KVVVLGGGSFGTAM--AAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 129 kI~IIGaG~mG~~~--A~~La~~G-~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
||+|||+|..-.+. -..+.... . ..++.++|.++++++.+.+.... +......+..+..++|.+++++++|+||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~--~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARR--MVEEAGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHH--HHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHH--HHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence 89999999876553 22333221 1 24799999999876643321100 0011112335788999999999999999
Q ss_pred Eccchh
Q 012596 205 HAMPVQ 210 (460)
Q Consensus 205 laVp~~ 210 (460)
.++-..
T Consensus 79 ~~irvG 84 (183)
T PF02056_consen 79 NQIRVG 84 (183)
T ss_dssp E---TT
T ss_pred EEeeec
Confidence 988654
No 276
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.40 E-value=0.017 Score=58.97 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=52.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+..||+|||+ .||...+..+.+...+.+++ +++++.++++++.++. ++...+|.++++.+.|+++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-------------gi~~y~~~eell~d~Di~~ 67 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-------------GVPLYCEVEELPDDIDIAC 67 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-------------CCCccCCHHHHhcCCCEEE
Confidence 3579999999 68999999888753125655 7899999888887742 1224468999888889998
Q ss_pred Eccch
Q 012596 205 HAMPV 209 (460)
Q Consensus 205 laVp~ 209 (460)
+++|+
T Consensus 68 V~ipt 72 (343)
T TIGR01761 68 VVVRS 72 (343)
T ss_pred EEeCC
Confidence 88864
No 277
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.40 E-value=0.015 Score=51.39 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 68999999999999999999994 3799998774
No 278
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.37 E-value=0.0069 Score=60.22 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=27.7
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
||.|+|+|.+|+.+|..|++.|. .+++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence 68999999999999999999996 367777754
No 279
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.35 E-value=0.0094 Score=60.59 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=61.2
Q ss_pred ccCCCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCC
Q 012596 124 LERTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGA 200 (460)
Q Consensus 124 ~~~~~kI~IIGa-G~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~a 200 (460)
|++.+||+|||+ |..|.-+.+.|.+..+ ..++..+..... .|.... +.+. .+.+. ++++. ..++
T Consensus 1 ~~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s-------aG~~~~-~~~~----~~~v~-~~~~~~~~~~ 67 (336)
T PRK08040 1 MSEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES-------AGETLR-FGGK----SVTVQ-DAAEFDWSQA 67 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc-------CCceEE-ECCc----ceEEE-eCchhhccCC
Confidence 345689999996 9999999999998432 246666654432 122211 1111 23332 23232 3689
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++|+|+|.....++...+.+ .|..+|+++.
T Consensus 68 Dvvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 68 QLAFFVAGREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred CEEEECCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 999999998877666665533 5788999875
No 280
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.34 E-value=0.011 Score=62.01 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
+.++|.|||.|.+|.++|..|.+.| ++|+++|+++..
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G--~~V~g~D~~~~~ 38 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKG--VYVIGVDKSLEA 38 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCC--CEEEEEeCCccc
Confidence 4578999999999999999999999 899999987653
No 281
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.32 E-value=0.0079 Score=57.13 Aligned_cols=97 Identities=12% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La--~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD 201 (460)
..+|+|||+|.+|..++..+. ..| +++. ++|++++...... .+. .+...+++.+.++ ++|
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g--~~ivgv~D~d~~~~~~~i---------~g~----~v~~~~~l~~li~~~~iD 148 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG--FKIVAAFDVDPEKIGTKI---------GGI----PVYHIDELEEVVKENDIE 148 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC--cEEEEEEECChhhcCCEe---------CCe----EEcCHHHHHHHHHHCCCC
Confidence 468999999999999998643 334 6766 6787764331100 010 0111235556554 499
Q ss_pred EEEEccchhcHHHHHHHhh-----hcCCCCCeEEEeccCCcc
Q 012596 202 YCLHAMPVQFSSSFLEGIS-----DYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~-----~~l~~~~iIV~~~~Gi~~ 238 (460)
.|++|+|.....++.+.+. ..+....+.+++..|+..
T Consensus 149 ~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v 190 (213)
T PRK05472 149 IGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIV 190 (213)
T ss_pred EEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEE
Confidence 9999999877666554433 223323344455555543
No 282
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.25 E-value=0.019 Score=50.89 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=57.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|.|+| .+..|..++..|.+.| ..|++++++. .++++.++.||+|+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~g--atV~~~~~~t----------------------------~~l~~~v~~ADIVv 76 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDG--ATVYSCDWKT----------------------------IQLQSKVHDADVVV 76 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence 468999999 6678999999999988 8999887542 15667789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ ++ .+++++|+++++..
T Consensus 77 sAtg~~~~---i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 77 VGSPKPEK---VP--TEWIKPGATVINCS 100 (140)
T ss_pred EecCCCCc---cC--HHHcCCCCEEEEcC
Confidence 99987643 11 35678999999765
No 283
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.18 E-value=0.013 Score=59.70 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=32.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 35799999999999999999999994 3899999874
No 284
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.18 E-value=0.031 Score=57.21 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHhhcCCCccCCCCCC-CCceEEe-CCHHhhcCCCc
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKL-PENVIAT-TDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~-l~~~g~~~~~~~~~~l-~~~i~a~-~~~~ea~~~aD 201 (460)
+++||+|+| .|.+|..+...|.+.. ..+++++.+++....+ +........| .+..- ...+.+. .++++ +.++|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p-~~el~~~~~s~~~~G~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~D 78 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP-WFEVTALAASERSAGKTYGEAVRWQLD-GPIPEEVADMEVVSTDPEA-VDDVD 78 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC-CceEEEEEcChhhcCCccccccccccc-ccccccccceEEEeCCHHH-hcCCC
Confidence 358999998 8999999999999764 2578877555533211 1100000000 00000 0112222 24444 57899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+||.|+|......+.+.+.. .|..+|+++.
T Consensus 79 vVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred EEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 99999998766665554433 4677888774
No 285
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.17 E-value=0.017 Score=59.55 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=31.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..+|.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 35799999999999999999999995 4799999873
No 286
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.13 E-value=0.011 Score=62.21 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=49.3
Q ss_pred CeEEEECcchHHHH--HHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGTA--MAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~~--~A~~La~~G--~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|.. .. +...|.... . ..+|+++|.++++.+.+..... ++......+-.+..++|.++|+++||+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~--~~~~~~g~~~~v~~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK--ILFKENYPEIKFVYTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhhCCCeEEEEECCHHHHhCCCCE
Confidence 79999999985 21 222333221 1 2689999999987654332110 011111123357889999999999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||.+.-
T Consensus 78 Vi~~ir 83 (437)
T cd05298 78 VFAQIR 83 (437)
T ss_pred EEEEee
Confidence 998764
No 287
>PRK10206 putative oxidoreductase; Provisional
Probab=96.12 E-value=0.027 Score=57.50 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=48.9
Q ss_pred CCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcE
Q 012596 127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi 202 (460)
+.||||||+|.++.. .+..+.....+.+|. ++|++++.. +..+.. + .+.+.+|.+++++ +.|+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~------~------~~~~~~~~~ell~~~~iD~ 67 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY------S------HIHFTSDLDEVLNDPDVKL 67 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc------C------CCcccCCHHHHhcCCCCCE
Confidence 468999999997753 344443321125665 788887543 333221 0 1234568888885 5799
Q ss_pred EEEccchhcHHHHHHH
Q 012596 203 CLHAMPVQFSSSFLEG 218 (460)
Q Consensus 203 VilaVp~~~~~~vl~~ 218 (460)
|++|+|.....++...
T Consensus 68 V~I~tp~~~H~~~~~~ 83 (344)
T PRK10206 68 VVVCTHADSHFEYAKR 83 (344)
T ss_pred EEEeCCchHHHHHHHH
Confidence 9999998765554433
No 288
>PRK06153 hypothetical protein; Provisional
Probab=96.11 E-value=0.014 Score=59.89 Aligned_cols=110 Identities=17% Similarity=0.295 Sum_probs=63.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cC-CCccCCC--C----------CCCCceE---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HC-NCRYFPE--Q----------KLPENVI--- 188 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~-g~-~~~~~~~--~----------~l~~~i~--- 188 (460)
+..||+|||+|..|+.++..|++.|. -+++++|.+.-....++.+ |. ....++. . .+...+.
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 35799999999999999999999996 4788888663211111111 00 0000000 0 0011121
Q ss_pred --EeCCHHhhcCCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 189 --ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 189 --a~~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
+..+..+.+.++|+||.|+-....+.++...... .+..+|++..|+..
T Consensus 254 ~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~~ 303 (393)
T PRK06153 254 EYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLEL 303 (393)
T ss_pred ecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeeccee
Confidence 1112223467899999999887777766554432 25677777655543
No 289
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.09 E-value=0.019 Score=56.81 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=56.9
Q ss_pred CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||-|. +|.++|..|.+.| ..|+++.+.. .++.+.++.+|+||.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG--CTVTVCHRFT----------------------------KNLRHHVRNADLLVV 208 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC--CeEEEEECCC----------------------------CCHHHHHhhCCEEEE
Confidence 68999999999 9999999999888 8999987542 256677889999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++..... + ...++++|+++|++.
T Consensus 209 avG~p~~---v--~~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---I--PGEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---c--cHHHcCCCcEEEEcc
Confidence 9953331 1 125678899999975
No 290
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.07 E-value=0.033 Score=56.79 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=57.8
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~-~r~~~~~~~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDiVi 204 (460)
|||+|+|+ |.||..++..|.+.. ..+|+.+ ++..+..+.+.+......| .+..- ...+.+.+...+...++|+||
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~-~~~l~~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP-YFELAKVVASPRSAGKRYGEAVKWIEP-GDMPEYVRDLPIVEPEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CceEEEEEEChhhcCCcchhhcccccc-CCCccccceeEEEeCCHHHhccCCEEE
Confidence 58999995 999999999998765 2577755 4443221212111000000 00000 011222221223457899999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|+|......+...+.. .|..+|+++.
T Consensus 79 ~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred EeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 99998876666654433 4777888764
No 291
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.05 E-value=0.032 Score=45.96 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=56.7
Q ss_pred CCeEEEECcchHHHHHHHHHH-hcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La-~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi 202 (460)
..+|+|+|+|++|.+++..+. ..| +. +.++|.++++. |. .+ .++.+..+.+++.+. .|+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g--~~i~~~~dv~~~~~------G~--------~i-~gipV~~~~~~l~~~~~i~i 65 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG--FGIVAVFDVDPEKI------GK--------EI-GGIPVYGSMDELEEFIEIDI 65 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC--ECEEEEEEECTTTT------TS--------EE-TTEEEESSHHHHHHHCTTSE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC--CCCEEEEEcCCCcc------Cc--------EE-CCEEeeccHHHhhhhhCCCE
Confidence 468999999999999885444 334 55 45788887422 11 01 134555566665554 999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++||+....+++.++.+. .=..|++++
T Consensus 66 aii~VP~~~a~~~~~~~~~~--gIk~i~nft 94 (96)
T PF02629_consen 66 AIITVPAEAAQEVADELVEA--GIKGIVNFT 94 (96)
T ss_dssp EEEES-HHHHHHHHHHHHHT--T-SEEEEES
T ss_pred EEEEcCHHHHHHHHHHHHHc--CCCEEEEeC
Confidence 99999999888888776552 113455554
No 292
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.04 E-value=0.014 Score=61.19 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=49.1
Q ss_pred CeEEEECcchH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~m-G~~~A~~La~~G--~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
|||+|||+|.. ..-+...|.... . ..+|.++|.++++.+.+.+... ++......+-.+..++|.++|+++||+|
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~--~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999983 212333333222 1 2689999999976654322110 0000111123577899999999999999
Q ss_pred EEccc
Q 012596 204 LHAMP 208 (460)
Q Consensus 204 ilaVp 208 (460)
|...-
T Consensus 79 i~~ir 83 (425)
T cd05197 79 INQFR 83 (425)
T ss_pred EEeee
Confidence 98773
No 293
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.04 E-value=0.023 Score=51.61 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=50.8
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||-+ .+|.+++..|.+.| ..|+++.... .++++.++.||+||
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~--atVt~~h~~T----------------------------~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKG--ATVTICHSKT----------------------------KNLQEITRRADIVV 84 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TTS----------------------------SSHHHHHTTSSEEE
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCC--CeEEeccCCC----------------------------CcccceeeeccEEe
Confidence 46899999987 59999999999998 8999876543 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... +. ...+++|+++|++.
T Consensus 85 sa~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 85 SAVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp E-SSSTT----B---GGGS-TTEEEEE--
T ss_pred eeeccccc---cc--cccccCCcEEEecC
Confidence 99985443 11 35678899999875
No 294
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.01 E-value=0.017 Score=53.10 Aligned_cols=80 Identities=15% Similarity=0.315 Sum_probs=52.9
Q ss_pred CCCeEEEECcchHHHHHHHHH-H-hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHV-A-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~L-a-~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a 200 (460)
++.++.|||+|++|.+++..- . ++| .+++ ++|.+++.+ |.... + + .+.--++++..++ +.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~--~~iv~~FDv~~~~V------G~~~~---~--v--~V~~~d~le~~v~~~dv 147 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNG--MKIVAAFDVDPDKV------GTKIG---D--V--PVYDLDDLEKFVKKNDV 147 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcC--ceEEEEecCCHHHh------CcccC---C--e--eeechHHHHHHHHhcCc
Confidence 467999999999999998754 2 455 6655 889888633 21111 1 1 1222345555555 78
Q ss_pred cEEEEccchhcHHHHHHHhh
Q 012596 201 DYCLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~ 220 (460)
|+.|+|||+..-.++.+.+.
T Consensus 148 ~iaiLtVPa~~AQ~vad~Lv 167 (211)
T COG2344 148 EIAILTVPAEHAQEVADRLV 167 (211)
T ss_pred cEEEEEccHHHHHHHHHHHH
Confidence 99999999877777666653
No 295
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.94 E-value=0.038 Score=46.17 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
+..+|.|||.|.+|..=+..|.+.| .+|++++.+.+..+ .... . .....++.+.++|+|++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~~~~~----~~i~------------~-~~~~~~~~l~~~~lV~~ 66 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEIEFSE----GLIQ------------L-IRREFEEDLDGADLVFA 66 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSEHHHH----TSCE------------E-EESS-GGGCTTESEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCchhhhh----hHHH------------H-HhhhHHHHHhhheEEEe
Confidence 4579999999999999999999999 99999999851111 1110 0 11223345788999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
++....+.+.+...... ..++++..
T Consensus 67 at~d~~~n~~i~~~a~~---~~i~vn~~ 91 (103)
T PF13241_consen 67 ATDDPELNEAIYADARA---RGILVNVV 91 (103)
T ss_dssp -SS-HHHHHHHHHHHHH---TTSEEEET
T ss_pred cCCCHHHHHHHHHHHhh---CCEEEEEC
Confidence 99887766544443332 23555543
No 296
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.94 E-value=0.059 Score=57.10 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGa----G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
..++|+|||+ |.+|..+..+|.+.|+.-+|+.++...+.+ .++.+..+++++-+..|
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~~~D 66 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPDPVD 66 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCCCCC
Confidence 4578999999 889999999999988323677666543211 02334457777666789
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
++++++|...+.+++++..+. .- ..+|.++.|+..
T Consensus 67 lavi~vp~~~~~~~l~e~~~~-gv-~~~vi~s~gf~e 101 (447)
T TIGR02717 67 LAVIVVPAKYVPQVVEECGEK-GV-KGAVVITAGFKE 101 (447)
T ss_pred EEEEecCHHHHHHHHHHHHhc-CC-CEEEEECCCccc
Confidence 999999999999998887653 22 244556777754
No 297
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.93 E-value=0.065 Score=54.31 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhc-CCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTAL-LGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~-~~aDiVi 204 (460)
..+|+|+|+|.+|..-.......| .+|+.++|++++.+..++.|....+ ... .+..+.+ +.+|+||
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i----------~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVI----------NSSDSDALEAVKEIADAII 234 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEE----------EcCCchhhHHhHhhCcEEE
Confidence 579999999988885444444467 8999999999999888887753111 111 1222222 2399999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.+++...+...++.+ +++-.++.+
T Consensus 235 ~tv~~~~~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 235 DTVGPATLEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred ECCChhhHHHHHHHH----hcCCEEEEE
Confidence 999944455554443 344444443
No 298
>PRK08223 hypothetical protein; Validated
Probab=95.92 E-value=0.027 Score=55.86 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+..||.|||+|.+|+.++..|+++|. ..++++|.+.-
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCCc
Confidence 45799999999999999999999996 47888987753
No 299
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.90 E-value=0.03 Score=52.62 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 4799999999999999999999996 5799999875
No 300
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.90 E-value=0.013 Score=56.81 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+..||.|+|+|.+|+.++..|++.|. .+++++|.+.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCcc
Confidence 35799999999999999999999996 47889988754
No 301
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.86 E-value=0.021 Score=59.04 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+..||.|+|+|.+|+.++..|++.|. -+++++|++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 45799999999999999999999995 379999988
No 302
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.86 E-value=0.021 Score=59.87 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=49.3
Q ss_pred CeEEEECcchHHH-HHHHHHHhcC--C-CCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 128 NKVVVLGGGSFGT-AMAAHVANKK--S-QLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 128 ~kI~IIGaG~mG~-~~A~~La~~G--~-~~~V~v~~r~-~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
|||+|||+|..-+ .+...|+... . ..+|.++|.+ +++++.+..... ++......+..+..++|.+++++++|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~--~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK--RMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 7999999999643 2333344321 1 2689999999 776544322110 000011112357788999999999999
Q ss_pred EEEccc
Q 012596 203 CLHAMP 208 (460)
Q Consensus 203 VilaVp 208 (460)
||++.-
T Consensus 79 Vi~~~~ 84 (419)
T cd05296 79 VFTQIR 84 (419)
T ss_pred EEEEEe
Confidence 998763
No 303
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.86 E-value=0.037 Score=58.34 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=47.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHH----HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVC----QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-~~~----~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
+.++|.|+|+|.+|.++|..|++.| ++|++++++. +.+ +++.+.|.. +...+...+...++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~ 69 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIE------------LVLGEYPEEFLEGV 69 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCE------------EEeCCcchhHhhcC
Confidence 3579999999999999999999999 9999999975 223 223222321 11112223345679
Q ss_pred cEEEEccc
Q 012596 201 DYCLHAMP 208 (460)
Q Consensus 201 DiVilaVp 208 (460)
|+||.+.-
T Consensus 70 d~vv~~~g 77 (450)
T PRK14106 70 DLVVVSPG 77 (450)
T ss_pred CEEEECCC
Confidence 99999765
No 304
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.81 E-value=0.028 Score=57.40 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiV 203 (460)
.+||+|+| .|..|..+.+.|.+.++ ..++.++...... |....+ .+. .+.+.+ +. +.+.++|+|
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-------Gk~~~~-~~~----~~~v~~~~~-~~~~~~D~v 73 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-------GKKVTF-EGR----DYTVEELTE-DSFDGVDIA 73 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-------CCeeee-cCc----eeEEEeCCH-HHHcCCCEE
Confidence 58999999 69999999999998762 1245444433211 111110 111 122222 33 345789999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|+|.....++...+.+ .|..||+++.
T Consensus 74 f~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 101 (344)
T PLN02383 74 LFSAGGSISKKFGPIAVD---KGAVVVDNSS 101 (344)
T ss_pred EECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence 999998877776665433 5788999885
No 305
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.77 E-value=0.026 Score=56.27 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=48.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCH---HHHHHHHhhcCCCccCCCCCCC-CceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDP---AVCQSINEKHCNCRYFPEQKLP-ENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~-V~v~~r~~---~~~~~l~~~g~~~~~~~~~~l~-~~i~a~~~~~ea~~~aD 201 (460)
.+++.|+|+|.+|.+++..|++.| .+ |++++|+. ++++++.+.- ...+ +..... ..+.-.++..+.++.+|
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G--~~~V~I~~R~~~~~~~a~~l~~~l-~~~~-~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDG--AKEITIFNIKDDFYERAEQTAEKI-KQEV-PECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCchHHHHHHHHHHHH-hhcC-CCceeEEechhhhhHHHhhhccCC
Confidence 468999999999999999999998 65 99999986 5555544321 0000 000000 00000012233456789
Q ss_pred EEEEccch
Q 012596 202 YCLHAMPV 209 (460)
Q Consensus 202 iVilaVp~ 209 (460)
+||-++|.
T Consensus 202 ilINaTp~ 209 (289)
T PRK12548 202 ILVNATLV 209 (289)
T ss_pred EEEEeCCC
Confidence 99999885
No 306
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.74 E-value=0.064 Score=53.44 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHhhcCCCccCCCCCCCCceEEeC-----CHHhhcC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT-----DAKTALL 198 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~---~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-----~~~ea~~ 198 (460)
.+++.|||+|..+.+++..|+..|. .+|++++|++ ++++.+.+.- +..+ ...+...+ .+.+.+.
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~-~~~~------~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRV-NENT------DCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHh-hhcc------CceEEEechhhhhhhhhhcc
Confidence 4689999999999999999998883 4899999994 4666665531 1000 00111111 1223456
Q ss_pred CCcEEEEccch
Q 012596 199 GADYCLHAMPV 209 (460)
Q Consensus 199 ~aDiVilaVp~ 209 (460)
++|+||-++|.
T Consensus 196 ~aDivINaTp~ 206 (288)
T PRK12749 196 SADILTNGTKV 206 (288)
T ss_pred cCCEEEECCCC
Confidence 78999999985
No 307
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.72 E-value=0.036 Score=54.92 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=56.5
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||.| .+|.++|..|.+.| ..|+++.... .++.+.++.||+||
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~g--AtVtv~hs~t----------------------------~~l~~~~~~ADIvV 205 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAG--ASVSVCHILT----------------------------KDLSFYTQNADIVC 205 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CEEEEEeCCc----------------------------HHHHHHHHhCCEEE
Confidence 36899999999 99999999999988 8999885322 14556678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 206 ~AvG~p~~---i--~~~~vk~GavVIDvG 229 (285)
T PRK14191 206 VGVGKPDL---I--KASMVKKGAVVVDIG 229 (285)
T ss_pred EecCCCCc---C--CHHHcCCCcEEEEee
Confidence 99975443 1 123567899999875
No 308
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.71 E-value=0.21 Score=47.81 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=54.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||.|.+|..=+..|.+.| .+|+++...-. .+..+.+.+. .... ... . +..+ +.++++||.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~~~-i~~~-----~r~---~-~~~d-l~g~~LVia 91 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKYGN-LKLI-----KGN---Y-DKEF-IKDKHLIVI 91 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE-----eCC---C-ChHH-hCCCcEEEE
Confidence 578999999999999999999998 89999987532 3444444331 1110 000 0 2333 578999999
Q ss_pred ccchhcHHHHHHHhh
Q 012596 206 AMPVQFSSSFLEGIS 220 (460)
Q Consensus 206 aVp~~~~~~vl~~i~ 220 (460)
|+....+..-+....
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999877766554443
No 309
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.68 E-value=0.031 Score=56.95 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=58.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHh-cCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVAN-KKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~-~G~~~~---V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~a 200 (460)
.+||||||+ |.+|.-|.+.|.+ .. .+ +.++..... .|.... +.+. .+.+. .+.++ +.++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~--f~v~~l~~~aS~~s-------aGk~~~-~~~~----~l~v~~~~~~~-~~~~ 69 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETK--FNIAEVTLLSSKRS-------AGKTVQ-FKGR----EIIIQEAKINS-FEGV 69 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCC--CCcccEEEEECccc-------CCCCee-eCCc----ceEEEeCCHHH-hcCC
Confidence 479999996 9999999999995 44 55 555654421 122211 1111 12222 24444 5789
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++|+|+|.....++...+.+ .|..+|+++.
T Consensus 70 Divf~a~~~~~s~~~~~~~~~---~G~~VID~Ss 100 (347)
T PRK06728 70 DIAFFSAGGEVSRQFVNQAVS---SGAIVIDNTS 100 (347)
T ss_pred CEEEECCChHHHHHHHHHHHH---CCCEEEECch
Confidence 999999998877777665433 5789999875
No 310
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.68 E-value=0.024 Score=53.99 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=51.6
Q ss_pred EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 130 I~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|+|+|+ |.+|..++..|.+.+ ++|+++.|+.. ..+.+.+.|..... .+ + .-.+++.++++++|.||++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~--~~V~~l~R~~~~~~~~~l~~~g~~vv~-~d--~----~~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG--FSVRALVRDPSSDRAQQLQALGAEVVE-AD--Y----DDPESLVAALKGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--GCEEEEESSSHHHHHHHHHHTTTEEEE-S---T----T-HHHHHHHHTTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC--CCcEEEEeccchhhhhhhhcccceEee-cc--c----CCHHHHHHHHcCCceEEee
Confidence 789996 999999999999988 99999999864 45666666542110 00 0 0112456678999999999
Q ss_pred cch
Q 012596 207 MPV 209 (460)
Q Consensus 207 Vp~ 209 (460)
++.
T Consensus 72 ~~~ 74 (233)
T PF05368_consen 72 TPP 74 (233)
T ss_dssp SSC
T ss_pred cCc
Confidence 993
No 311
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.67 E-value=0.037 Score=53.77 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 35799999999999999999999996 4788888764
No 312
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.66 E-value=0.043 Score=54.42 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=63.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiVi 204 (460)
.+++.|+|+|-.+.+++..|++.|. .++++++|+.++++++.+....... .+.. ..+.+. ..++|+||
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~~--------~~~~~~~~~~~~-~~~~dliI 195 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELGA--------AVEAAALADLEG-LEEADLLI 195 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhccc--------cccccccccccc-ccccCEEE
Confidence 4789999999999999999999993 5799999999998888764221000 0111 112222 22689999
Q ss_pred EccchhcH----HHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFS----SSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~----~~vl~~i~~~l~~~~iIV~~~ 233 (460)
-++|..-. ...+. ...++++.++.++.
T Consensus 196 NaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 196 NATPVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred ECCCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 99995321 11222 34566777887775
No 313
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.62 E-value=0.053 Score=50.90 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|+|+|.+|+.++..|+..|. ..++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 35799999999999999999999996 4799998764
No 314
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.61 E-value=0.23 Score=47.11 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.++|.|||.|.+|..=+..|.+.| .+|+++.... .....+.+.+.- ... .-.-++++ +.++++||.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs~~~~~el~~~~~~~~i-~~~---------~~~~~~~~-~~~~~lvia 78 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG--ADVTVVSPEFEPELKALIEEGKI-KWI---------EREFDAED-LDDAFLVIA 78 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CEEEEEcCCccHHHHHHHHhcCc-chh---------hcccChhh-hcCceEEEE
Confidence 579999999999999999999999 8999998775 455555554420 100 00113444 456999999
Q ss_pred ccchhcHHHHHHH
Q 012596 206 AMPVQFSSSFLEG 218 (460)
Q Consensus 206 aVp~~~~~~vl~~ 218 (460)
|+.+..+.+-+.+
T Consensus 79 At~d~~ln~~i~~ 91 (210)
T COG1648 79 ATDDEELNERIAK 91 (210)
T ss_pred eCCCHHHHHHHHH
Confidence 9998776554433
No 315
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.55 E-value=0.037 Score=56.77 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 35799999999999999999999996 4788998775
No 316
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.025 Score=58.88 Aligned_cols=81 Identities=27% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCCeEEEECcchHHHHH--HHHHHhc-CC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 126 RTNKVVVLGGGSFGTAM--AAHVANK-KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~--A~~La~~-G~-~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
+++||+|||+|+.+.+- ..-|.+. .. ..++.++|.++++.+.+...- .++....-.+-.+..++|.++|+++||
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~--~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILA--KKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHH--HHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 56899999999987652 2222221 11 268999999987655221100 001111112335778899999999999
Q ss_pred EEEEccc
Q 012596 202 YCLHAMP 208 (460)
Q Consensus 202 iVilaVp 208 (460)
+|+.+.-
T Consensus 80 fVi~~~r 86 (442)
T COG1486 80 FVITQIR 86 (442)
T ss_pred EEEEEEe
Confidence 9998874
No 317
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.53 E-value=0.067 Score=51.91 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=32.7
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCC-----C----CeEEEEeCCH
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKS-----Q----LKVYMLMRDP 162 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~-----~----~~V~v~~r~~ 162 (460)
++.+..||.|||+|.+|+.++..|++.|. + .+++++|.+.
T Consensus 7 ~~~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 7 LLSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred HHhCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 34567899999999999999999999741 1 3889999765
No 318
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.52 E-value=0.038 Score=61.19 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+||+|||+|..|...|..|++.| ++|++|++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence 3689999999999999999999999 8999999875
No 319
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.45 E-value=0.029 Score=57.26 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=57.0
Q ss_pred eEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCcEEEE
Q 012596 129 KVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (460)
Q Consensus 129 kI~IIG-aG~mG~~~A~~La~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil 205 (460)
||+|+| .|..|..+.+.|.++++. .++.++.+.+..-+.+.. .+. .+...+ +. +.+.++|+||+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~--------~~~----~~~~~~~~~-~~~~~~D~v~~ 67 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF--------KGK----ELEVNEAKI-ESFEGIDIALF 67 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee--------CCe----eEEEEeCCh-HHhcCCCEEEE
Confidence 689999 899999999999987721 234455555422111111 110 122221 23 33578999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|++.....++...+.+ .|..||+++.
T Consensus 68 a~g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 68 SAGGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred CCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence 9999887777665533 5778898774
No 320
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.43 E-value=0.075 Score=45.18 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHhcCC--CCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCcEEEEc
Q 012596 134 GGGSFGTAMAAHVANKKS--QLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCLHA 206 (460)
Q Consensus 134 GaG~mG~~~A~~La~~G~--~~~V~-v~~r~~~~~--~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVila 206 (460)
|+|.||..++..|.+... +.+|. +++|+ ... ....... ....+++.++.+. +.|+||-|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-------------DEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-------------HSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-------------cccccCCHHHHhcCcCCCEEEEC
Confidence 899999999999987630 14555 66777 100 0111100 1235568888877 89999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
..+..+.+.+... ++.|.-+|++++|...
T Consensus 67 t~~~~~~~~~~~~---L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 67 TSSEAVAEYYEKA---LERGKHVVTANKGALA 95 (117)
T ss_dssp SSCHHHHHHHHHH---HHTTCEEEES-HHHHH
T ss_pred CCchHHHHHHHHH---HHCCCeEEEECHHHhh
Confidence 8777766655444 4468889998887554
No 321
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.39 E-value=0.046 Score=52.82 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=34.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~ 167 (460)
++|+|.|+|+ |.+|..++..|.+.| ++|+++.|+++....
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~ 56 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG--FAVKAGVRDVDKAKT 56 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC--CEEEEEecCHHHHHH
Confidence 3689999995 999999999999998 999999999876543
No 322
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.32 E-value=0.033 Score=43.99 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
||.|||+|..|.-+|..|++.| .+|+++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccch
Confidence 6899999999999999999999 99999998763
No 323
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.31 E-value=0.046 Score=56.85 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=55.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCceEE-----
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPENVIA----- 189 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~----------~l~~~i~a----- 189 (460)
+..||.|||+|.+|+.++..|++.|. .+++++|.+.-....+..+-. .....+.. .+.+.+.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 35799999999999999999999996 378888876422222221100 00000000 01111111
Q ss_pred --e-CCHHhhcCCCcEEEEccchhcHHHHHHHhhh
Q 012596 190 --T-TDAKTALLGADYCLHAMPVQFSSSFLEGISD 221 (460)
Q Consensus 190 --~-~~~~ea~~~aDiVilaVp~~~~~~vl~~i~~ 221 (460)
. .+..+.++++|+||.|+-....+..+.++..
T Consensus 120 ~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~ 154 (392)
T PRK07878 120 RLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAV 154 (392)
T ss_pred cCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHH
Confidence 1 1234567789999998877666666665543
No 324
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.31 E-value=0.057 Score=53.34 Aligned_cols=73 Identities=26% Similarity=0.320 Sum_probs=57.1
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.+ ..|.++|..|...| ..|+++.+... ++.+.++.||+||
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~~~~--atVtv~hs~t~----------------------------~L~~~~~~ADIvI 200 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLLNAD--ATVTICHSKTE----------------------------NLKAELRQADILV 200 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHHhCC--CeeEEEecChh----------------------------HHHHHHhhCCEEE
Confidence 35899999999 99999999999888 89998876531 4666778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.+++...+ +. ..++++|+++|++.
T Consensus 201 ~Avgk~~l---v~--~~~vk~GavVIDVg 224 (279)
T PRK14178 201 SAAGKAGF---IT--PDMVKPGATVIDVG 224 (279)
T ss_pred ECCCcccc---cC--HHHcCCCcEEEEee
Confidence 99974322 11 23358899999975
No 325
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.30 E-value=0.022 Score=59.25 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=31.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+|.|||+|.+|.+.|..|+++| ++|+++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 58999999999999999999999 8999999875
No 326
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.30 E-value=0.026 Score=49.41 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=30.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||+|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 4689999999999999999999995 4799999875
No 327
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.30 E-value=0.1 Score=52.96 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=51.3
Q ss_pred EEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHh-hcCCCcc-CCC--CCC-CCceEEeCCHHhhcCCCcEE
Q 012596 130 VVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINE-KHCNCRY-FPE--QKL-PENVIATTDAKTALLGADYC 203 (460)
Q Consensus 130 I~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~-~g~~~~~-~~~--~~l-~~~i~a~~~~~ea~~~aDiV 203 (460)
|||+|.|.||...++.+.+.. +.+|+ +.|.+++....+.. .|....+ +++ ..+ ..++.+..++++++.++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~-d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD-DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC-CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence 689999999999999987653 36766 44555654444443 2321111 111 011 12355566788888999999
Q ss_pred EEccchhc
Q 012596 204 LHAMPVQF 211 (460)
Q Consensus 204 ilaVp~~~ 211 (460)
+.|+|...
T Consensus 80 ve~Tp~~~ 87 (333)
T TIGR01546 80 VDATPGGI 87 (333)
T ss_pred EECCCCCC
Confidence 99999653
No 328
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.27 E-value=0.059 Score=53.16 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=51.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHH---hhcCCCcEE
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAK---TALLGADYC 203 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a-~~~~~---ea~~~aDiV 203 (460)
.||+|||.|.+-...-....+.|.+..|..+|++++..+..++--.. ...+...+.+ +.|.. .-+.++|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~-----~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS-----DLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh-----cccccCCeEEEecchhccccccccCCEE
Confidence 49999999999887655555544336788999999865433221000 0011122332 22332 225689999
Q ss_pred EEccchh----cHHHHHHHhhhcCCCCCeEEE
Q 012596 204 LHAMPVQ----FSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 204 ilaVp~~----~~~~vl~~i~~~l~~~~iIV~ 231 (460)
+++--.. .-.++++.+.+++++|+.|+-
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9986654 678899999999999987664
No 329
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.25 E-value=0.089 Score=52.28 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=51.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVi 204 (460)
.+++.|+|+|..|.+++..|++.|. .+|++++|+.++++++.+.- +..+ +.. .+...+ +..+.+..+|+||
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~-~~~~-~~~----~~~~~~~~~~~~~~~~~divI 199 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVI-NNAV-GRE----AVVGVDARGIEDVIAAADGVV 199 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHH-hhcc-Ccc----eEEecCHhHHHHHHhhcCEEE
Confidence 4689999999999999999999883 47999999999888886541 1000 000 011111 1223346789999
Q ss_pred Eccch
Q 012596 205 HAMPV 209 (460)
Q Consensus 205 laVp~ 209 (460)
=++|.
T Consensus 200 NaTp~ 204 (283)
T PRK14027 200 NATPM 204 (283)
T ss_pred EcCCC
Confidence 88884
No 330
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.24 E-value=0.2 Score=49.95 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=66.8
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCe-EEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-- 199 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~-V~v~~r~--~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~-- 199 (460)
+..||.|.|. |.+|..+..+|.+.| ++ |+.+++. .+.+ .++.+..+.+++-+.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g--~~~v~pVnp~~~~~~v-------------------~G~~~y~sv~dlp~~~~ 65 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYG--TNIVGGVTPGKGGTTV-------------------LGLPVFNTVAEAVEATG 65 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCC--CCEEEEECCCCCCCeE-------------------eCeeccCCHHHHhhccC
Confidence 4579999996 889999999999887 54 4344443 2111 124455678776665
Q ss_pred CcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHH
Q 012596 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ 250 (460)
Q Consensus 200 aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~ 250 (460)
.|++++++|...+.+++++..+. .-..+|-++.|+..+..+.+.+..++
T Consensus 66 ~DlAvi~vp~~~v~~~l~e~~~~--gvk~avI~s~Gf~~~~~~~l~~~a~~ 114 (291)
T PRK05678 66 ANASVIYVPPPFAADAILEAIDA--GIDLIVCITEGIPVLDMLEVKAYLER 114 (291)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 89999999999999988886552 11244555677764322234444433
No 331
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=95.19 E-value=0.13 Score=50.07 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=68.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~--~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.-||.|+|.|.+|.+.|..+...|.-.++.++|.++++++ .+--++... + .-.+++....|... -+++++||
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~-f----~~~~~V~~~~Dy~~-sa~S~lvI 93 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSA-F----LSTPNVVASKDYSV-SANSKLVI 93 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccc-c----ccCCceEecCcccc-cCCCcEEE
Confidence 5799999999999999999988886568999999887543 222222110 1 11235666556654 47899999
Q ss_pred Eccchhc------------HHHHHHHhhhc---CCCCCeEEEeccCCcc
Q 012596 205 HAMPVQF------------SSSFLEGISDY---VDPGLPFISLSKGLEL 238 (460)
Q Consensus 205 laVp~~~------------~~~vl~~i~~~---l~~~~iIV~~~~Gi~~ 238 (460)
++.-..+ .-++++.|.+. ..|+++++-.+|-++.
T Consensus 94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI 142 (332)
T ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence 9875421 11233444332 3478888888886553
No 332
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.19 E-value=0.019 Score=58.15 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=58.3
Q ss_pred CeEEEECcchHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHHHHhhcCCCcc----CCCCCCCCceEEe-CCHHh
Q 012596 128 NKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQSINEKHCNCRY----FPEQKLPENVIAT-TDAKT 195 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~------G~~~~V~-v~~r~~~~~~~l~~~g~~~~~----~~~~~l~~~i~a~-~~~~e 195 (460)
|||+|+|.|++|..++..|.+. |.+.+|+ +.|++.... +..|++... .....+. ..... -+.++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~---~~~Gldl~~l~~~~~~g~l~-~~~~~~~~~~~ 76 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYY---NERGLDIGKIISYKEKGRLE-EIDYEKIKFDE 76 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCccc---CCcCCChHHHHHHHhcCccc-cCCCCcCCHHH
Confidence 5899999999999999999873 4334544 556553211 111211100 0000000 00000 13444
Q ss_pred hc-CCCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 196 AL-LGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 196 a~-~~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
.+ .++|+||-|+++... ......+.+.++.|.-+|...+|...
T Consensus 77 ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA 121 (326)
T PRK06392 77 IFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA 121 (326)
T ss_pred HhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH
Confidence 32 468999999985321 12234445566678889988887654
No 333
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.19 E-value=0.094 Score=51.63 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
+..+|.|+|+|.+|+..|..|++.|. .+++++|.+.-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCEe
Confidence 35799999999999999999999996 47999997753
No 334
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.18 E-value=0.18 Score=50.75 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC--cE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA--DY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~-~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a--Di 202 (460)
..|+||+|+|.|+.-+++.|.-.-. +|.|+ +.+|+.+++.++.+.+. +| +.++..+.++++++. |+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~---------~~-~~k~y~syEeLakd~~vDv 75 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN---------IP-NPKAYGSYEELAKDPEVDV 75 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC---------CC-CCccccCHHHHhcCCCcCE
Confidence 4689999999999999999974321 36666 77898888888877542 22 345667888888764 99
Q ss_pred EEEccchhcHHHHHHHhh
Q 012596 203 CLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~ 220 (460)
|.++.|..+..+++--++
T Consensus 76 Vyi~~~~~qH~evv~l~l 93 (351)
T KOG2741|consen 76 VYISTPNPQHYEVVMLAL 93 (351)
T ss_pred EEeCCCCccHHHHHHHHH
Confidence 999999877666554443
No 335
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.16 E-value=0.14 Score=52.62 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=55.9
Q ss_pred CCeEEEECc-chHHHHHHHHHH-hcCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVA-NKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La-~~G~~~~---V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|++|||||+ |.+|.-|.+.|. ... .+ +.+++... .|.....+.+... .+....+.++ +.++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~--f~~~~l~~~ss~~--------sg~~~~~f~g~~~--~v~~~~~~~~-~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND--FDLIEPVFFSTSQ--------AGGAAPSFGGKEG--TLQDAFDIDA-LKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC--CCcCcEEEecchh--------hCCcccccCCCcc--eEEecCChhH-hcCCC
Confidence 479999996 999999998554 444 44 66654432 1211111222111 1121123333 57899
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCC--CeEEEecc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~--~iIV~~~~ 234 (460)
++|+|+|.....++...+.+ .| .++|+.+.
T Consensus 68 ivf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 68 IIITCQGGDYTNEVYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred EEEECCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 99999998877777666544 46 56888774
No 336
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.067 Score=56.78 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-----~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
.+||+|+|+|.-|.++|..|.+.| ++|+++|+++. ..+.+.+.|.. +....+..+.+.++|
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~------------~~~~~~~~~~~~~~d 79 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVK------------LVLGENYLDKLDGFD 79 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCE------------EEeCCCChHHhccCC
Confidence 468999999999999999999999 99999997642 12345444431 111112223357899
Q ss_pred EEEEc
Q 012596 202 YCLHA 206 (460)
Q Consensus 202 iVila 206 (460)
+||.+
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99887
No 337
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.12 E-value=0.092 Score=52.86 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=55.1
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
++||+||| .|..|.-+.+.|.++. ..++.....+... . + .+.++...++|+||+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~---------~------------~---~~~~~~~~~~DvvFl 56 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRK---------D------------A---AARRELLNAADVAIL 56 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCC---------c------------c---cCchhhhcCCCEEEE
Confidence 57999999 7999999999999875 2344433322210 0 0 122334568999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
|+|.....++..++.+ .|..||+++.
T Consensus 57 alp~~~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 57 CLPDDAAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEECCh
Confidence 9998877776666543 5788999875
No 338
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.03 E-value=0.07 Score=54.15 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=32.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++|.|||+|-||...++.|.++|. .+|++.+|+.+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGY-SRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence 4799999999999999999999984 47999999973
No 339
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.08 Score=56.71 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=47.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.++|.|+|+|..|.+.+..|...| .+|+++|+.+...+.+.+.|.. + .......+.+.++|+||.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~~~~l~~~g~~--~----------~~~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDALRPHAERGVA--T----------VSTSDAVQQIADYALVVTS 77 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHhCCCE--E----------EcCcchHhHhhcCCEEEEC
Confidence 478999999999999999999998 8999999876655555444431 1 1111223345788999886
Q ss_pred c
Q 012596 207 M 207 (460)
Q Consensus 207 V 207 (460)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
No 340
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.01 E-value=0.029 Score=57.87 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=33.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|++.++|.|||+|..|.++|..|++.| ++|++++|.+.
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAE 38 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcc
Confidence 344579999999999999999999999 89999998753
No 341
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.95 E-value=0.06 Score=54.58 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=32.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQ 166 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~ 166 (460)
||||.|.|+ |.+|+.++..|.++ | ++|+.++|+.+...
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~--~~V~~~~r~~~~~~ 40 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD--WEVYGMDMQTDRLG 40 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC--CeEEEEeCcHHHHH
Confidence 478999997 99999999999876 5 89999999765443
No 342
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.91 E-value=0.095 Score=55.90 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~ 167 (460)
++||.|+|+|..|.++|..|.+.| ++|+++|++.....+
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG--CDVVVADDNETARHK 53 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC--CEEEEECCChHHHHH
Confidence 578999999999999999999999 899999987654433
No 343
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.86 E-value=0.12 Score=49.36 Aligned_cols=96 Identities=10% Similarity=-0.070 Sum_probs=58.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH----------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP----------AVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~----------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+.++|+|.|.|++|..+|..|.+.| . .|.+.|.+. +.++...+.+.- ..++. .... +.+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G--~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~-~~~~~------~~~~-~~~ 91 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG--GKVLAVSDPDGYIYDPGITTEELINYAVALGGS-ARVKV------QDYF-PGE 91 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCc-cccCc------cccc-Ccc
Confidence 3689999999999999999999998 5 455778777 555555444321 11111 0111 111
Q ss_pred hh-cCCCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 195 TA-LLGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 195 ea-~~~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+. -.+||+++-|.....+ .+....+ + -.+|+--.|+-
T Consensus 92 ~l~~~~~DVlipaA~~~~i~~~~a~~l----~-a~~V~e~AN~p 130 (217)
T cd05211 92 AILGLDVDIFAPCALGNVIDLENAKKL----K-AKVVAEGANNP 130 (217)
T ss_pred cceeccccEEeeccccCccChhhHhhc----C-ccEEEeCCCCC
Confidence 21 1379999999887653 3333333 2 34666666643
No 344
>PLN03075 nicotianamine synthase; Provisional
Probab=94.86 E-value=0.28 Score=48.97 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=64.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhh---cCCCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTA---LLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea---~~~aD 201 (460)
...+|+.||+|..|..-...+++...+..++.+|.+++..+..++.-.. ...+...+.+. .|..+. ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-----~~gL~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-----DPDLSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-----ccCccCCcEEEECchhhcccccCCcC
Confidence 4589999999999876655555443235799999999876655442110 00111223321 222221 36899
Q ss_pred EEEEccc----hhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMP----VQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp----~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
+|++.+= ...-..+++.+.+.+++|.+++.-
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999852 134577899999999998876653
No 345
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.82 E-value=0.066 Score=59.46 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+||+|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4579999999999999999999999 9999999864
No 346
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.80 E-value=0.28 Score=48.19 Aligned_cols=45 Identities=11% Similarity=0.344 Sum_probs=40.1
Q ss_pred cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 125 ~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
++++++.|-| .+.+|..+|..|+++| ++|+++.|+.++++++.++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKE 49 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHH
Confidence 3467899999 6899999999999999 9999999999999888764
No 347
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.80 E-value=0.092 Score=51.86 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=49.0
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEcc
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV 207 (460)
.++.|+|+|..+.+++..|++.|. .+|++++|+.++.+.+.+.- .. ....+.. ...+|+||-|+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~-~~------------~~~~~~~--~~~~dlvINaT 186 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELY-GY------------EWRPDLG--GIEADILVNVT 186 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHh-CC------------cchhhcc--cccCCEEEECC
Confidence 589999999999999999999883 36999999999888887641 00 0000111 24589999999
Q ss_pred ch
Q 012596 208 PV 209 (460)
Q Consensus 208 p~ 209 (460)
|.
T Consensus 187 p~ 188 (272)
T PRK12550 187 PI 188 (272)
T ss_pred cc
Confidence 84
No 348
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.78 E-value=0.43 Score=47.51 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi 202 (460)
+..||.|.| .|.+|..+-.+|...| .+ .+|..++.+ +.. . -.++.+..+..++-+. .|+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g--~~-~v~~V~p~~-------~~~--~------v~G~~~y~sv~dlp~~~~~Dl 66 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYG--TN-IVGGVTPGK-------GGT--T------VLGLPVFDSVKEAVEETGANA 66 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCC--CC-EEEEECCCC-------Ccc--e------ecCeeccCCHHHHhhccCCCE
Confidence 457899999 7999999999999888 66 555555520 000 0 0134455677776555 799
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
+++++|...+.+++++.... . -..+|-++.|+...
T Consensus 67 avi~vpa~~v~~~l~e~~~~-G-vk~avIis~Gf~e~ 101 (286)
T TIGR01019 67 SVIFVPAPFAADAIFEAIDA-G-IELIVCITEGIPVH 101 (286)
T ss_pred EEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHH
Confidence 99999999999988887552 1 12445567787543
No 349
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.77 E-value=0.13 Score=54.77 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|..|..+|..|.+.| ++|+++++.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 468999999999999999999999 8999999654
No 350
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.11 Score=51.62 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=55.9
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++|||.|. +|.++|..|.+.| ..|+++.... .++.+..+.||+||
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvv 212 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRN--ATVSVCHVFT----------------------------DDLKKYTLDADILV 212 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCC--CEEEEEeccC----------------------------CCHHHHHhhCCEEE
Confidence 368999999999 9999999999888 8999887432 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++--... + -..++++|+++|++.
T Consensus 213 ~AvG~p~~---i--~~~~vk~gavVIDvG 236 (287)
T PRK14176 213 VATGVKHL---I--KADMVKEGAVIFDVG 236 (287)
T ss_pred EccCCccc---c--CHHHcCCCcEEEEec
Confidence 97753321 1 123678899999875
No 351
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.75 E-value=0.087 Score=52.05 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.|||-| .+|.++|..|.++| ..|+++.... .++.+..+.||+||
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~--AtVti~hs~T----------------------------~~l~~~~~~ADIvV 205 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNAN--ATVDICHIFT----------------------------KDLKAHTKKADIVI 205 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence 36899999988 89999999999888 8899764321 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 206 ~AvGkp~~---i--~~~~vk~gavvIDvG 229 (281)
T PRK14183 206 VGVGKPNL---I--TEDMVKEGAIVIDIG 229 (281)
T ss_pred EecCcccc---c--CHHHcCCCcEEEEee
Confidence 99975443 1 134577899999875
No 352
>PRK06847 hypothetical protein; Provisional
Probab=94.74 E-value=0.037 Score=56.59 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=33.7
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|.++++|+|||+|.-|.++|..|++.| ++|+++++.++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 445689999999999999999999999 89999998753
No 353
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.74 E-value=0.04 Score=57.20 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=31.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|+|||+|.+|.+.|..|++.| ++|++++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 68999999999999999999999 89999999753
No 354
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=94.73 E-value=0.015 Score=48.21 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=56.3
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCCceeeecccCCCccchHHHHhhCCCChHHHHhhcccceehhh
Q 012596 333 NLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVS 412 (460)
Q Consensus 333 kl~~n~~~al~~~~~~E~~~la~a~Gi~~~~~~~~~~~gd~~~t~~s~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~k 412 (460)
|+..|.+.++..+.++|+..+|+++|+|...+.+..+....+. ..-..+|..+ .|..+. |
T Consensus 8 K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~------~~~~~pg~g~-GG~Clp-------------k 67 (96)
T PF00984_consen 8 KYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG------PHYLRPGPGF-GGSCLP-------------K 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT------SSS-S-SSS---SSCHH-------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc------cccCCCCCCC-CCcchh-------------h
Confidence 4445677888899999999999999999877765422211000 0000111111 234442 7
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHH
Q 012596 413 TAGAVIALAQKYNVKMPVLTAVARI 437 (460)
Q Consensus 413 d~g~vv~lA~~~gv~~P~~~~v~~l 437 (460)
|...++..++++|++.++++.+.+.
T Consensus 68 D~~~L~~~~~~~g~~~~ll~~~~~~ 92 (96)
T PF00984_consen 68 DPYALIYLAKELGYPPQLLEAVINI 92 (96)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 8899999999999999999888765
No 355
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.70 E-value=0.15 Score=51.21 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=54.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
.||+|+| .|..|.-+.+.|++.. +.++.....+.. . . ..+.++.++++|++|+|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~---------~--------------~-~~~~~~~~~~~D~vFla 56 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR---------K--------------D-AAERAKLLNAADVAILC 56 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc---------c--------------C-cCCHhHhhcCCCEEEEC
Confidence 4899999 7999999999999764 234443322211 0 0 01344556789999999
Q ss_pred cchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 207 Vp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|.....++...+. ..+..||+++.
T Consensus 57 lp~~~s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 57 LPDDAAREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred CCHHHHHHHHHHHH---hCCCEEEECCh
Confidence 99887776665553 35788999885
No 356
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.68 E-value=0.18 Score=42.32 Aligned_cols=84 Identities=15% Similarity=-0.004 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEccchhcHHH-HH
Q 012596 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS-FL 216 (460)
Q Consensus 138 mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~~~~-vl 216 (460)
-+..++..|.+.| .+|.++|..-........ +. ..++...+++.++++++|+||++++-..... -.
T Consensus 18 p~~~l~~~L~~~g--~~V~~~DP~v~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEELKERG--AEVSVYDPYVDEEEIKEL-GK----------LEGVEVCDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp HHHHHHHHHHHTT---EEEEE-TTSHHHHHHHH-CH----------HHCEEEESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred HHHHHHHHHHHCC--CEEEEECCccChHHHHhh-CC----------ccceEEecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 4567899999999 899999986543332221 00 0135667789999999999999999776554 24
Q ss_pred HHhhhcCCCCCeEEEecc
Q 012596 217 EGISDYVDPGLPFISLSK 234 (460)
Q Consensus 217 ~~i~~~l~~~~iIV~~~~ 234 (460)
+.+...++++.+|+++-+
T Consensus 85 ~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp HHHHHHSCSSEEEEESSS
T ss_pred HHHHHhcCCCCEEEECcc
Confidence 566666767788888765
No 357
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.67 E-value=0.08 Score=49.41 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCC-CceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP-ENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~-~~i~a~~~~~ea~~~aDiV 203 (460)
..++|+||| ...+|.++|..|.+.| ..|++++.+.... ... +...++. ..+ .+ ...++.+.++.||+|
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~--AtVti~~~~~~~~--~~~-~~~~~hs---~t~~~~--~~~~l~~~~~~ADIV 130 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDG--ARVYSVDINGIQV--FTR-GESIRHE---KHHVTD--EEAMTLDCLSQSDVV 130 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEEecCcccc--ccc-ccccccc---cccccc--hhhHHHHHhhhCCEE
Confidence 468999999 5568999999999988 8999997553211 000 0000000 000 00 001256778999999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|.+++..... + =.+++++|+++|++.
T Consensus 131 IsAvG~~~~~--i--~~d~ik~GavVIDVG 156 (197)
T cd01079 131 ITGVPSPNYK--V--PTELLKDGAICINFA 156 (197)
T ss_pred EEccCCCCCc--c--CHHHcCCCcEEEEcC
Confidence 9999865431 0 134567899999975
No 358
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.66 E-value=0.11 Score=51.91 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCH---HhhcCCCc
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDA---KTALLGAD 201 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea~~~aD 201 (460)
..++|+|+|+|-+|+ ||..++++ ++++|+++++... +-+.++..|.. .| +..+.|. +++...-|
T Consensus 181 pG~~vgI~GlGGLGh-~aVq~AKA-MG~rV~vis~~~~kkeea~~~LGAd-~f---------v~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGH-MAVQYAKA-MGMRVTVISTSSKKKEEAIKSLGAD-VF---------VDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcccch-HHHHHHHH-hCcEEEEEeCCchhHHHHHHhcCcc-ee---------EEecCCHHHHHHHHHhhc
Confidence 458999999999887 67777776 3499999999874 44455545532 11 1222233 22334457
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
.++-++.+. .+..++.+..+++.+-.+|.+
T Consensus 249 g~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 249 GGIDTVSNL-AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred Ccceeeeec-cccchHHHHHHhhcCCEEEEE
Confidence 777777743 222334444555554444443
No 359
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.61 E-value=0.16 Score=48.75 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeC----------CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMR----------DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r----------~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+.++|+|.|.|++|..++..|.+.| ..|+ +.|. +.+.+.++.+.......+++ . ... +.+
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g--~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~-----~-~~~-~~~ 100 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAG--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPG-----A-ERI-TNE 100 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCC-----c-eec-CCc
Confidence 3589999999999999999999998 8888 6666 55555555443222111111 1 111 111
Q ss_pred hh-cCCCcEEEEccchhcH-HHHHHHhhhcCCCCCeEEEeccCC
Q 012596 195 TA-LLGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (460)
Q Consensus 195 ea-~~~aDiVilaVp~~~~-~~vl~~i~~~l~~~~iIV~~~~Gi 236 (460)
+. -.+||+++-|.+...+ .+-+..+. -.+|+-..|+-
T Consensus 101 ~i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~ 139 (227)
T cd01076 101 ELLELDCDILIPAALENQITADNADRIK-----AKIIVEAANGP 139 (227)
T ss_pred cceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCCCC
Confidence 21 1379999998876553 44444442 24666666643
No 360
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.60 E-value=0.12 Score=51.18 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+.++.||+||
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~--atVt~chs~t----------------------------~~l~~~~~~ADIvI 206 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNEN--ATVTYCHSKT----------------------------KNLAELTKQADILI 206 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEEeCCc----------------------------hhHHHHHHhCCEEE
Confidence 468999999 6778999999999888 8999885422 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 207 ~AvG~p~~---i--~~~~ik~gavVIDvG 230 (284)
T PRK14190 207 VAVGKPKL---I--TADMVKEGAVVIDVG 230 (284)
T ss_pred EecCCCCc---C--CHHHcCCCCEEEEee
Confidence 99975542 1 134567899999875
No 361
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.59 E-value=0.1 Score=55.61 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.7
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCC
Confidence 3579999999999999999999998 8999998764
No 362
>PLN02427 UDP-apiose/xylose synthase
Probab=94.55 E-value=0.065 Score=55.28 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=48.7
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~-G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDi 202 (460)
+.|||.|.|+ |-+|+.++..|.++ | ++|++++|+.+....+...+.. ...++..+ ...+.-..+..++++++|+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g--~~V~~l~r~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP--HKVLALDVYNDKIKHLLEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC--CEEEEEecCchhhhhhhccccc-cCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 3589999995 99999999999987 5 8999999887655544322110 00001100 0011101134456778999
Q ss_pred EEEcc
Q 012596 203 CLHAM 207 (460)
Q Consensus 203 VilaV 207 (460)
||-+.
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 99765
No 363
>PRK07411 hypothetical protein; Validated
Probab=94.52 E-value=0.11 Score=54.00 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCc--eEE---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPEN--VIA--- 189 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~-~~~~~~~~----------~l~~~--i~a--- 189 (460)
+..||.|||+|.+|+.++..|+++|. -.++++|.+.-....++.+-. +....+.. .+.+. +.+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 35799999999999999999999996 468888876422222221100 00001000 01111 111
Q ss_pred --e-CCHHhhcCCCcEEEEccchhcHHHHHHHhh
Q 012596 190 --T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (460)
Q Consensus 190 --~-~~~~ea~~~aDiVilaVp~~~~~~vl~~i~ 220 (460)
+ .+..+.+.++|+||.|+-....+.++..+.
T Consensus 116 ~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 116 RLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1 123455788999999988777766666554
No 364
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.41 E-value=0.2 Score=51.23 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCC-ccCCCCCCCCceEEeCCHHhhc--CCCcEEEE
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC-RYFPEQKLPENVIATTDAKTAL--LGADYCLH 205 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~-~~~~~~~l~~~i~a~~~~~ea~--~~aDiVil 205 (460)
++.|+|+|.||...+..+...|. .+|++.|+++++++..++.+... ...+... .......+.- ..+|++|-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-----~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGADVVVNPSED-----DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCeEeecCccc-----cHHHHHHHHhCCCCCCEEEE
Confidence 79999999999998777777773 57888899999888777633211 1100000 0000011111 35999999
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEE
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFIS 231 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~ 231 (460)
|+-.. ..+++....++++-.++.
T Consensus 245 ~~G~~---~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 245 AVGSP---PALDQALEALRPGGTVVV 267 (350)
T ss_pred CCCCH---HHHHHHHHHhcCCCEEEE
Confidence 99833 344455555565554443
No 365
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.40 E-value=0.11 Score=50.19 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999996 4788888765
No 366
>PRK07877 hypothetical protein; Provisional
Probab=94.36 E-value=0.083 Score=58.93 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC----------CCCc--eEEe---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK----------LPEN--VIAT--- 190 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~----------l~~~--i~a~--- 190 (460)
+..||+|+|+| +|+..|..|++.|.--+++++|.+.-....++........++..+ +.+. +.+.
T Consensus 106 ~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 106 GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 35799999999 999999999999830268888866422222222110101110000 1111 1111
Q ss_pred ---CCHHhhcCCCcEEEEccchhcHHHHHHHh
Q 012596 191 ---TDAKTALLGADYCLHAMPVQFSSSFLEGI 219 (460)
Q Consensus 191 ---~~~~ea~~~aDiVilaVp~~~~~~vl~~i 219 (460)
++.++.+.++|+||-|+-....+.++...
T Consensus 185 i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred CCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 24566778999999999987777666554
No 367
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.91 Score=43.40 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
.+.++|||.|..|.+...+....+ +... +..|++++++.+.+--. . +.. |.+...+-.+++|+
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~--~~cs~i~srS~~~a~~LaE~~~---------a-~p~----d~~~~ael~~~vfv 73 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVV--VACSAISSRSRDRAQNLAETYV---------A-PPL----DVAKSAELLLLVFV 73 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchh--eeehhhhhcCHHHHhhchhccC---------C-Ccc----chhhChhhhceEEe
Confidence 478999999999999555555444 3333 34577777666544211 0 111 22222234688899
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
-+|......+... ....++++++.|+
T Consensus 74 ~vpd~~~s~vaa~--~~~rpg~iv~HcS 99 (289)
T COG5495 74 DVPDALYSGVAAT--SLNRPGTIVAHCS 99 (289)
T ss_pred cchHHHHHHHHHh--cccCCCeEEEEcc
Confidence 9987744443322 2345889999987
No 368
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.26 E-value=0.15 Score=54.23 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=46.0
Q ss_pred CCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~-~A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
+.++|.|||+|..|.+ +|+.|.+.| ++|+++|.... ..+.+.+.|... ....+. +.+.++|+|
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~~~~~-~~~~~~d~v 70 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESAVTQRLLELGAII------------FIGHDA-ENIKDADVV 70 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCChHHHHHHHCCCEE------------eCCCCH-HHCCCCCEE
Confidence 3578999999999999 799999999 99999997643 333454444311 001122 345689999
Q ss_pred EEc
Q 012596 204 LHA 206 (460)
Q Consensus 204 ila 206 (460)
|++
T Consensus 71 v~s 73 (461)
T PRK00421 71 VYS 73 (461)
T ss_pred EEC
Confidence 885
No 369
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.23 E-value=0.14 Score=50.82 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++||| ...+|.++|..|.+.+ ..|+++.... .++++..+.||+||
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVtichs~T----------------------------~~l~~~~~~ADIvI 203 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLRED--ATVTLAHSKT----------------------------QDLPAVTRRADVLV 203 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5678999999999887 8899875432 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 204 sAvGkp~~---i--~~~~vk~GavVIDVG 227 (287)
T PRK14173 204 VAVGRPHL---I--TPEMVRPGAVVVDVG 227 (287)
T ss_pred EecCCcCc---c--CHHHcCCCCEEEEcc
Confidence 99975432 1 135578899999874
No 370
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.22 E-value=0.16 Score=54.55 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=45.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~--~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.++|.|+|.|..|.++|+.|.+.| ++|+++|.... ..+.+.+.+.... +.......+.+.++|+||
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~~~~L~~~~~~~~----------~~~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPNLAALRAELPDAE----------FVGGPFDPALLDGVDLVA 74 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchhHHHHHhhcCCcE----------EEeCCCchhHhcCCCEEE
Confidence 468999999999999999999999 99999997542 2334544432111 111111233456889999
Q ss_pred Ec
Q 012596 205 HA 206 (460)
Q Consensus 205 la 206 (460)
.+
T Consensus 75 ~s 76 (498)
T PRK02006 75 LS 76 (498)
T ss_pred EC
Confidence 86
No 371
>PRK07236 hypothetical protein; Provisional
Probab=94.20 E-value=0.061 Score=55.47 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.++|.|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 4589999999999999999999999 8999999875
No 372
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.20 E-value=0.17 Score=54.83 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~ 171 (460)
.+++.|+|+|.+|.+++..|++.| .+|++++|+.++++.+.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G--~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKG--ARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence 468999999999999999999999 7999999998888877653
No 373
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.19 E-value=0.4 Score=45.26 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=34.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l 168 (460)
+++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG--AKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChhHHHHH
Confidence 478999995 999999999999999 8999999998765543
No 374
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.17 E-value=0.094 Score=58.26 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~ 226 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANE 226 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 579999999999999999999999 9999999764
No 375
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.14 E-value=0.11 Score=56.21 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=36.5
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
..+.|.|.|+ |.+|..++..|++.| ++|++++|+.++.+.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGVRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 4578999996 999999999999999 99999999988776554
No 376
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.14 E-value=0.17 Score=53.29 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|+|+|.+|.++|..|++.| ++|+++|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCC
Confidence 468999999999999999999999 9999999764
No 377
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.09 E-value=0.16 Score=50.19 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=56.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++||| ...+|.+++..|.++| ..|+++.... .++.+..+.||+||
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~--AtVt~chs~T----------------------------~~l~~~~~~ADIvI 206 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNEN--ATVTICHSKT----------------------------KNLKEVCKKADILV 206 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5678999999999888 8899886432 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 207 sAvGkp~~---i--~~~~ik~gavVIDvG 230 (278)
T PRK14172 207 VAIGRPKF---I--DEEYVKEGAIVIDVG 230 (278)
T ss_pred EcCCCcCc---c--CHHHcCCCcEEEEee
Confidence 99985443 1 134578899999873
No 378
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.16 Score=50.34 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=55.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI 204 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHD--ATVTIAHSKT----------------------------RNLKQLTKEADILV 204 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEE
Confidence 358999999 5578999999999888 8899875321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.-..+ + -.+++++|+++|++.
T Consensus 205 ~AvG~p~~---i--~~~~vk~GavVIDvG 228 (282)
T PRK14169 205 VAVGVPHF---I--GADAVKPGAVVIDVG 228 (282)
T ss_pred EccCCcCc---c--CHHHcCCCcEEEEee
Confidence 99985443 1 134577899999874
No 379
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.07 E-value=0.066 Score=55.58 Aligned_cols=46 Identities=33% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeeeccccchhccCCCeEEEECcchHHHHHHHHHHhc-CCCC-eEEEEeCCH
Q 012596 111 WSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDP 162 (460)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~~A~~La~~-G~~~-~V~v~~r~~ 162 (460)
|++.|.+.. ..+.-.|.|||+|.+|.+.|..|++. | . +|+++++..
T Consensus 18 ~~~~~~~~~----~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~ 65 (407)
T TIGR01373 18 WKPAWRSPE----PKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGW 65 (407)
T ss_pred CCcccCCCC----CCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEccc
Confidence 888887654 22345799999999999999999985 7 5 899999863
No 380
>PRK06753 hypothetical protein; Provisional
Probab=94.07 E-value=0.063 Score=54.89 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|.|||+|..|.+.|..|+++| ++|+++.+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 68999999999999999999999 89999998764
No 381
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.05 E-value=0.16 Score=50.67 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.| ..|+++.... .++.+..+.||+||
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvI 206 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAAN--ATVTIAHSRT----------------------------QDLASITREADILV 206 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 358999999 5678999999999988 8899874321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... + -..++++|+++|++.
T Consensus 207 sAvGkp~~---i--~~~~ik~gavVIDvG 230 (297)
T PRK14186 207 AAAGRPNL---I--GAEMVKPGAVVVDVG 230 (297)
T ss_pred EccCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985432 1 135678899999875
No 382
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.02 E-value=0.12 Score=52.14 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=52.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHH---HHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVC---QSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~---~~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~a 200 (460)
.+++|+|-| .|.+|+.+...|..+| |.|....|+++.- +.+.+...... ... +...+....+..+++.+|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG--Y~V~gtVR~~~~~k~~~~L~~l~~a~~---~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG--YTVRGTVRDPEDEKKTEHLRKLEGAKE---RLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC--CEEEEEEcCcchhhhHHHHHhcccCcc---cceEEeccccccchHHHHHhCC
Confidence 358999999 6999999999999999 9999999998752 22333211100 000 011223345678889999
Q ss_pred cEEEEcc
Q 012596 201 DYCLHAM 207 (460)
Q Consensus 201 DiVilaV 207 (460)
|.||.+-
T Consensus 80 dgVfH~A 86 (327)
T KOG1502|consen 80 DGVFHTA 86 (327)
T ss_pred CEEEEeC
Confidence 9999753
No 383
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.01 E-value=0.4 Score=45.79 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=36.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.++|.|.| .|.+|..++..|++.| ++|++++|+++..+.+.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG--AKVVIADLNDEAAAAAA 45 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 457899999 6999999999999999 99999999987665543
No 384
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.15 Score=54.14 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g 172 (460)
.+||.|||.|..|.+.|..|.+.| ++|+++|+.+.....+.+.|
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~l~~~g 52 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGG--AEVIAWDDNPASRAKAAAAG 52 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEECCChhhHHHHHhcC
Confidence 468999999999999999999999 99999998754444444444
No 385
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.94 E-value=0.044 Score=54.56 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=46.5
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEEc
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila 206 (460)
|||.|.|+ |.+|..++..|++.| ++|++++|+++....+...+. ... ...+.-.+++.++++++|+||.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~~~~~l~~~~~~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG--EEVRVLVRPTSDRRNLEGLDV--EIV-----EGDLRDPASLRKAVAGCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC--CEEEEEEecCccccccccCCc--eEE-----EeeCCCHHHHHHHHhCCCEEEEe
Confidence 58999995 999999999999999 999999998654332221111 100 00011012345566789999876
Q ss_pred cc
Q 012596 207 MP 208 (460)
Q Consensus 207 Vp 208 (460)
..
T Consensus 72 a~ 73 (328)
T TIGR03466 72 AA 73 (328)
T ss_pred ce
Confidence 53
No 386
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.91 E-value=0.17 Score=50.04 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~~l~~~~~~ADIvI 207 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMN--ATVTLCHSKT----------------------------QNLPSIVRQADIIV 207 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 6678999999999888 8999886432 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... + -.+++++|+++|++.
T Consensus 208 sAvGk~~~---i--~~~~ik~gavVIDvG 231 (284)
T PRK14177 208 GAVGKPEF---I--KADWISEGAVLLDAG 231 (284)
T ss_pred EeCCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985443 1 135578899999974
No 387
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.91 E-value=0.18 Score=49.84 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~--ATVt~chs~T----------------------------~dl~~~~k~ADIvI 206 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILI 206 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHhhhcCEEE
Confidence 368999999 5578999999999888 8999886432 25666678999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -..++++|+++|++.
T Consensus 207 sAvGkp~~---i--~~~~vk~gavVIDvG 230 (282)
T PRK14180 207 VAVGKPNF---I--TADMVKEGAVVIDVG 230 (282)
T ss_pred EccCCcCc---C--CHHHcCCCcEEEEec
Confidence 99985443 1 124577899999874
No 388
>PRK09186 flagellin modification protein A; Provisional
Probab=93.89 E-value=0.47 Score=45.41 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.++|.|.|+ |.+|..+|..|++.| ++|++.+|+++.++.+.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~ 46 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG--GIVIAADIDKEALNELLE 46 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecChHHHHHHHH
Confidence 4578999995 899999999999999 899999999877665543
No 389
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.87 E-value=0.18 Score=49.92 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=56.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLII 205 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 5568999999999887 8999876432 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -..++++|+++|++.
T Consensus 206 sAvGkp~~---i--~~~~vk~GavVIDvG 229 (282)
T PRK14166 206 VAAGCVNL---L--RSDMVKEGVIVVDVG 229 (282)
T ss_pred EcCCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985443 1 134577899999874
No 390
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.87 E-value=0.11 Score=53.00 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=57.6
Q ss_pred CCeEEEECcchHHHHHHHHHHh--------cCCCCeEE-EEeCCHHH-------HHHHHh---hcCCCccCCCCCCCCce
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN--------KKSQLKVY-MLMRDPAV-------CQSINE---KHCNCRYFPEQKLPENV 187 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~--------~G~~~~V~-v~~r~~~~-------~~~l~~---~g~~~~~~~~~~l~~~i 187 (460)
.++|+|+|.|++|+.++..|.+ .|.+..|. +.+++... .+++.+ .+..... ++...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~-----~~~~~ 76 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSN-----WGNDY 76 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhh-----ccccc
Confidence 4799999999999999999987 34223444 44543211 111111 1100000 00000
Q ss_pred EE-eCCHHhhc--CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 188 IA-TTDAKTAL--LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 188 ~a-~~~~~ea~--~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
.. ..+.++.+ .++|+||-++......++.. ..+..+..+|...+|..
T Consensus 77 ~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~---~al~~G~~VVtanK~~l 126 (336)
T PRK08374 77 EVYNFSPEEIVEEIDADIVVDVTNDKNAHEWHL---EALKEGKSVVTSNKPPI 126 (336)
T ss_pred cccCCCHHHHHhcCCCCEEEECCCcHHHHHHHH---HHHhhCCcEEECCHHHH
Confidence 00 11555655 47999999887655544443 34456888888888743
No 391
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.87 E-value=0.18 Score=57.79 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..+||+|||+|.-|...|..|++.| |+|++|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence 4689999999999999999999999 999999964
No 392
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.83 E-value=0.19 Score=50.77 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=59.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcC--------CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKK--------SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA--- 193 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G--------~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~--- 193 (460)
+.+||+|+|.|.+|+.++..|.+++ .+..|. +.+|+...... ..+.+. -...++.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~--~~~~~~-----------~~~~~~~~~~ 68 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRD--LDLLNA-----------EVWTTDGALS 68 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccc--ccccch-----------hhheeccccc
Confidence 5689999999999999999999863 123333 34555432220 011100 0011121
Q ss_pred --Hhh--cCCCcEEEEccch--hcHHHHHHHhhhcCCCCCeEEEeccCCcc
Q 012596 194 --KTA--LLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (460)
Q Consensus 194 --~ea--~~~aDiVilaVp~--~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~ 238 (460)
.+. ..+.|+|+-+++. ...+. ++.+.+.++.|..+|+.-|+...
T Consensus 69 ~~~~~~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA 118 (333)
T COG0460 69 LGDEVLLDEDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLA 118 (333)
T ss_pred ccHhhhccccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhH
Confidence 222 2467899988886 33454 66677778888888887765543
No 393
>PRK05868 hypothetical protein; Validated
Probab=93.83 E-value=0.07 Score=54.96 Aligned_cols=35 Identities=34% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|++|.|||+|..|.+.|..|++.| ++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence 578999999999999999999999 89999998754
No 394
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.81 E-value=0.42 Score=49.06 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=56.6
Q ss_pred CeEEEECc-chHHHHHHHHHH-hcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 128 NKVVVLGG-GSFGTAMAAHVA-NKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La-~~G~~-~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+||||+|+ |.+|..|...|. +..+. .++.+++.... .|... .+.+... .+...++. +...+.|++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s-------~g~~~-~f~~~~~--~v~~~~~~-~~~~~vDivf 69 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQL-------GQAAP-SFGGTTG--TLQDAFDI-DALKALDIII 69 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhh-------CCCcC-CCCCCcc--eEEcCccc-ccccCCCEEE
Confidence 58999997 999999999999 65532 34455554321 12111 1112211 22222222 2467899999
Q ss_pred EccchhcHHHHHHHhhhcCCCC--CeEEEecc
Q 012596 205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~--~iIV~~~~ 234 (460)
+|.++...+.+.....+ .| .++|+.+.
T Consensus 70 fa~g~~~s~~~~p~~~~---aG~~~~VIDnSS 98 (366)
T TIGR01745 70 TCQGGDYTNEIYPKLRE---SGWQGYWIDAAS 98 (366)
T ss_pred EcCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 99998877666655443 46 67888764
No 395
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.79 E-value=0.15 Score=51.59 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=66.9
Q ss_pred hhccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
++|...+++.|.|.|-.|...|.+|...| .+|.++..+|-++-+..=.|. ++. ..+++++.+|
T Consensus 204 n~liaGK~vVV~GYG~vGrG~A~~~rg~G--A~ViVtEvDPI~AleA~MdGf--------------~V~-~m~~Aa~~gD 266 (420)
T COG0499 204 NVLLAGKNVVVAGYGWVGRGIAMRLRGMG--ARVIVTEVDPIRALEAAMDGF--------------RVM-TMEEAAKTGD 266 (420)
T ss_pred ceeecCceEEEecccccchHHHHHhhcCC--CeEEEEecCchHHHHHhhcCc--------------EEE-EhHHhhhcCC
Confidence 37767799999999999999999999777 999999999854433332332 332 3567788999
Q ss_pred EEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccc
Q 012596 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN 239 (460)
Q Consensus 202 iVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~ 239 (460)
++|.++-...+-.. +=...++++.++.+.. -++.+
T Consensus 267 ifiT~TGnkdVi~~--eh~~~MkDgaIl~N~G-HFd~E 301 (420)
T COG0499 267 IFVTATGNKDVIRK--EHFEKMKDGAILANAG-HFDVE 301 (420)
T ss_pred EEEEccCCcCccCH--HHHHhccCCeEEeccc-cccee
Confidence 99999886553211 1123356676665543 14443
No 396
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.44 Score=45.03 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=35.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|+|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG--YKVAITARDQKELEEAAA 48 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC--CEEEEeeCCHHHHHHHHH
Confidence 368999985 999999999999988 899999999876655443
No 397
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=93.76 E-value=0.45 Score=53.14 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=68.3
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC---CCCEEEEECcc-----cHH-HHhc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP---RQPFIALSGPS-----FAL-ELMN 273 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~---~~~~~v~~gP~-----~a~-e~~~ 273 (460)
||+|+|...+.++++++.++++++++|.++.. += ..+.+.+.+.++.. +++...+.|+. .+. ++.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-vK----~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-TK----SDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV 75 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-cc----HHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence 68999999999999999999999999988753 11 12333333333211 11112233333 222 3445
Q ss_pred cCCeEEEEc-cCCHHHHHHHHHHHhcCCceEEEcCChHHHHHHHH
Q 012596 274 KLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA 317 (460)
Q Consensus 274 g~~~~i~i~-~~d~~~~~~l~~lL~~~g~~v~~~~Di~g~~~~ka 317 (460)
|....++.. ..+.+.++.+++++...|.++...+.-.+++...+
T Consensus 76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~ 120 (673)
T PRK11861 76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAA 120 (673)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHH
Confidence 554433322 23577899999999999988887665555554433
No 398
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=0.19 Score=49.80 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=55.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++|||- ..+|.++|..|.+.+ ..|+++.... .++.+.++.||+||
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI 205 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNEN--ATVTIAHSRT----------------------------KDLPQVAKEADILV 205 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 3689999995 568999999999888 8999875321 25677788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 206 ~AvG~~~~---i--~~~~vk~GavVIDvG 229 (284)
T PRK14170 206 VATGLAKF---V--KKDYIKPGAIVIDVG 229 (284)
T ss_pred EecCCcCc---c--CHHHcCCCCEEEEcc
Confidence 99985443 1 134577899999874
No 399
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.76 E-value=0.13 Score=56.05 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
..++|+|||+|..|...|..|++.| ++|+++++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence 4689999999999999999999999 899999864
No 400
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.73 E-value=0.43 Score=48.17 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=58.7
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCC--CCCCceEEeCCHHhhcCCCcE
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~-V~v~~r~~~~~~~l~~~g~~~~~~~~~--~l~~~i~a~~~~~ea~~~aDi 202 (460)
++||||+| .|.+|..|...|.+..+..+ +.++...+.. |.....+.+. ..+..+ .+.. ..+++|+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSa-------G~~~~~f~~~~~~v~~~~---~~~~-~~~~~Di 69 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSA-------GKKYIEFGGKSIGVPEDA---ADEF-VFSDVDI 69 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccccc-------CCccccccCccccCcccc---cccc-ccccCCE
Confidence 47999998 79999999999999654444 5555554422 2210111111 111111 1222 2468999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEecc
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~ 234 (460)
+|.|.+....+++...+.+ .|.++|+.+.
T Consensus 70 vf~~ag~~~s~~~~p~~~~---~G~~VIdnsS 98 (334)
T COG0136 70 VFFAAGGSVSKEVEPKAAE---AGCVVIDNSS 98 (334)
T ss_pred EEEeCchHHHHHHHHHHHH---cCCEEEeCCc
Confidence 9999998777777666654 4788888664
No 401
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.73 E-value=0.17 Score=49.61 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=36.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+++|.|.|+ |.+|..+|..|++.| ++|++.+|+++..+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG--WRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 467999997 999999999999999 999999999887766554
No 402
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.72 E-value=0.088 Score=53.87 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=32.6
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+++++|+|||+|.+|.+.|..|++.| .+|+++++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCc
Confidence 34689999999999999999999999 8999999765
No 403
>PRK06182 short chain dehydrogenase; Validated
Probab=93.71 E-value=0.14 Score=49.88 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
++++|.|.|+ |.+|..++..|++.| ++|++.+|+.+.++.+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG--YTVYGAARRVDKMEDLA 44 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 4578999995 899999999999999 99999999987666554
No 404
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.67 E-value=0.21 Score=49.78 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=55.8
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+.| ..|+++.... .++++.++.||+||
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~--ATVtvchs~T----------------------------~nl~~~~~~ADIvv 215 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKAD--ATVTVVHSRT----------------------------PDPESIVREADIVI 215 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5568999999999888 8999885421 25677789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.... ++. .+++++|+++|++.
T Consensus 216 ~AvGk~~---~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 216 AAAGQAM---MIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred EcCCCcC---ccC--HHHcCCCCEEEEee
Confidence 9997532 111 35678899999875
No 405
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.65 E-value=0.18 Score=57.48 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=47.5
Q ss_pred ccCCCeEEEECcchHHHHH-HHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCc
Q 012596 124 LERTNKVVVLGGGSFGTAM-AAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~-A~~La~~G~~~~V~v~~r~~~-~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD 201 (460)
|+++++|.|||+|..|.+. |+.|.+.| ++|+++|.+.. ..+.+.+.|.. + ..-.+. +.+.++|
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G--~~V~~sD~~~~~~~~~L~~~gi~--~----------~~g~~~-~~~~~~d 65 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG--YSVSGSDLSEGKTVEKLKAKGAR--F----------FLGHQE-EHVPEDA 65 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC--CeEEEECCCCChHHHHHHHCCCE--E----------eCCCCH-HHcCCCC
Confidence 5567789999999999997 99999999 99999997542 34445554431 1 111122 3456789
Q ss_pred EEEEc
Q 012596 202 YCLHA 206 (460)
Q Consensus 202 iVila 206 (460)
+||.+
T Consensus 66 ~vV~S 70 (809)
T PRK14573 66 VVVYS 70 (809)
T ss_pred EEEEC
Confidence 99875
No 406
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.63 E-value=0.075 Score=55.21 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=34.6
Q ss_pred hccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 123 ILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 123 ~~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
.+.++|||.|+|+ |.+|..++..|.+.| ++|++++|+...
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G--~~V~~l~R~~~~ 96 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRG--YNVVAVAREKSG 96 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEEechhh
Confidence 3445789999996 999999999999999 999999998754
No 407
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.61 E-value=0.8 Score=45.56 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|+|+|.+|+.+|.+|+.+|. ..++++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence 4799999999999999999999996 4799998764
No 408
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.60 E-value=0.086 Score=54.21 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhc---CCCCeEEEEeCC
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRD 161 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~---G~~~~V~v~~r~ 161 (460)
++++|.|||+|..|.++|..|++. | ++|+++++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 568999999999999999999998 8 999999984
No 409
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.55 Score=44.60 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+++++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG--WDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 3568999995 999999999999999 89999999987655544
No 410
>PLN02214 cinnamoyl-CoA reductase
Probab=93.59 E-value=0.15 Score=51.80 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHhh-cC--CCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEK-HC--NCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~--l~~~-g~--~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
+++|.|.|+ |.+|+.++..|.++| ++|++.+|+.+.... +... +. ...++ ...+.-..+..++++++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~~~~ 82 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGGKERLILC-----KADLQDYEALKAAIDGC 82 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCCCCcEEEE-----ecCcCChHHHHHHHhcC
Confidence 578999997 999999999999999 999999997653211 1111 00 00110 00111112445667889
Q ss_pred cEEEEccc
Q 012596 201 DYCLHAMP 208 (460)
Q Consensus 201 DiVilaVp 208 (460)
|+||.+..
T Consensus 83 d~Vih~A~ 90 (342)
T PLN02214 83 DGVFHTAS 90 (342)
T ss_pred CEEEEecC
Confidence 99998764
No 411
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.61 Score=44.99 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=35.1
Q ss_pred CCCeEEEECc-c-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G-~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.+++.|.|+ | .+|.+++..|++.| ++|++.+|+.+..+...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~ 59 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETA 59 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 4578999997 6 69999999999999 89999999887655443
No 412
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.54 E-value=0.22 Score=49.56 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=56.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVt~chs~T----------------------------~~l~~~~~~ADIvV 208 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGEN--CTVTTVHSAT----------------------------RDLADYCSKADILV 208 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5678999999999888 8999876432 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -..++++|+++|++.
T Consensus 209 sAvGkp~~---i--~~~~ik~gaiVIDVG 232 (294)
T PRK14187 209 AAVGIPNF---V--KYSWIKKGAIVIDVG 232 (294)
T ss_pred EccCCcCc---c--CHHHcCCCCEEEEec
Confidence 99985443 1 134567899999874
No 413
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.50 E-value=0.18 Score=50.14 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
.++|.|.| +|-+|+.++..|.+.| ++|++++|+.+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g--~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG--YTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence 47899999 5999999999999999 999999987643
No 414
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.49 E-value=0.15 Score=51.35 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence 68999999999999999999996 4799998764
No 415
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.47 E-value=0.12 Score=39.69 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=26.6
Q ss_pred EECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 132 IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
|||+|.-|.+.|..|++.| ++|+++++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCc
Confidence 8999999999999999998 9999999876
No 416
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.46 E-value=0.092 Score=54.04 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.++|..|+++| .+|+++++.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCC
Confidence 358999999999999999999999 8999999864
No 417
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.41 E-value=0.25 Score=48.89 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=55.6
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~--AtVtichs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERH--ATVTIAHSRT----------------------------ADLAGEVGRADILV 205 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 5678999999999888 8899875321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.-... + -.+++++|+++|++.
T Consensus 206 ~AvGk~~~---i--~~~~ik~gaiVIDvG 229 (282)
T PRK14182 206 AAIGKAEL---V--KGAWVKEGAVVIDVG 229 (282)
T ss_pred EecCCcCc---c--CHHHcCCCCEEEEee
Confidence 99975332 1 134578899999874
No 418
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.35 E-value=0.23 Score=49.19 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHh--cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVAN--KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~--~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++++||| .+.+|.+++..|.+ .+ ..|+++.... .++.+..+.||+
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~--atVtvchs~T----------------------------~~l~~~~k~ADI 206 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSEN--ATVTLCHTGT----------------------------RDLAAHTRRADI 206 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCC--CEEEEeCCCC----------------------------CCHHHHHHhCCE
Confidence 368999999 56789999999998 55 7898875431 256677889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++....+ + -..++++|+++|++.
T Consensus 207 vV~AvGkp~~---i--~~~~ik~GavVIDvG 232 (284)
T PRK14193 207 IVAAAGVAHL---V--TADMVKPGAAVLDVG 232 (284)
T ss_pred EEEecCCcCc---c--CHHHcCCCCEEEEcc
Confidence 9999975432 1 135678899999874
No 419
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.25 Score=49.00 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=55.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++++||| ...+|.+++..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~--ATVtichs~T----------------------------~~L~~~~~~ADIvV 207 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKEN--CSVTICHSKT----------------------------HNLSSITSKADIVV 207 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5568999999999888 8899875321 25667778999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++..... + -..++++|+++|++.
T Consensus 208 ~AvGkp~~---i--~~~~vk~GavVIDvG 231 (288)
T PRK14171 208 AAIGSPLK---L--TAEYFNPESIVIDVG 231 (288)
T ss_pred EccCCCCc---c--CHHHcCCCCEEEEee
Confidence 99974431 1 134578899999874
No 420
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.32 E-value=0.22 Score=50.79 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=56.2
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|.||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 230 ~GK~vvVIGRS~iVGkPLa~LL~~~~--ATVTicHs~T----------------------------~nl~~~~r~ADIVI 279 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT----------------------------KNPEEITREADIII 279 (364)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCC--CeEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 6678999999999988 8899875321 25667789999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++....+ + -.+++++|+++|++.
T Consensus 280 sAvGkp~~---i--~~d~vK~GAvVIDVG 303 (364)
T PLN02616 280 SAVGQPNM---V--RGSWIKPGAVVIDVG 303 (364)
T ss_pred EcCCCcCc---C--CHHHcCCCCEEEecc
Confidence 99975443 1 135578899999864
No 421
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.30 E-value=0.23 Score=50.41 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=55.8
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..++|+||| ...+|.++|..|.+++ ..|+++.... .++.+..+.||+||
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~--ATVTicHs~T----------------------------~nl~~~~~~ADIvI 262 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHD--ATVSTVHAFT----------------------------KDPEQITRKADIVI 262 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5568999999999888 8899875422 25667788999999
Q ss_pred EccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++.-..+ + -.+++++|+++|++.
T Consensus 263 sAvGkp~~---v--~~d~vk~GavVIDVG 286 (345)
T PLN02897 263 AAAGIPNL---V--RGSWLKPGAVVIDVG 286 (345)
T ss_pred EccCCcCc---c--CHHHcCCCCEEEEcc
Confidence 99975442 1 134578899999874
No 422
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.29 E-value=0.11 Score=51.93 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=29.3
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.+|+|||+|.-|.++|..|+++| ++|+++++.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence 47999999999999999999999 99999998753
No 423
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=93.27 E-value=4.4 Score=39.93 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=91.3
Q ss_pred ceEEeCCHHhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCCCCCEEEEEC
Q 012596 186 NVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG 264 (460)
Q Consensus 186 ~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~~~~~~v~~g 264 (460)
++++++|-.|+++++|++|+-+|-.. ...+++.+.+++++|++|.+..+ +.+- .+...++. ++...+.+. ..-
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCT-Ipt~---~ly~ilE~-l~R~DvgVs-S~H 199 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACT-IPTT---KFAKIFED-LGREDLNVT-SYH 199 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecccc-CChH---HHHHHHHh-hCcccCCee-ccC
Confidence 56778887889999999999999655 67899999999999998877553 4442 23334433 343211111 111
Q ss_pred cccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEE-cCChHHH--HHHHHHHHHHHHHHHHHh----cc-cCCC
Q 012596 265 PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST-SSDVTGV--EIAGALKNVLAIAAGIVV----GM-NLGN 336 (460)
Q Consensus 265 P~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~--~~~kalkNv~ai~~g~~~----~~-kl~~ 336 (460)
|.-.-+ ..++ .++.-+=.+.++.+++.++-++.+-..+. ..|+.+. .++.++.-+. ..|+.+ +. .++.
T Consensus 200 PaaVPg-t~~q-~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv~--~aGiL~Y~~~~t~IlgA 275 (340)
T TIGR01723 200 PGCVPE-MKGQ-VYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAIV--YAGLLAYRDAVTKILGA 275 (340)
T ss_pred CCCCCC-CCCc-eEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHHH--HHHHHHHHHHHHHHhcC
Confidence 211111 1121 22322334688999999999987655543 3443331 1333322111 012211 11 1222
Q ss_pred c--HHHHHHHHHHHHHHHHHHHcCCC
Q 012596 337 N--SMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 337 n--~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
+ .....+..++.-+..+-+..|++
T Consensus 276 P~~miq~qa~eaL~tmasLme~~GI~ 301 (340)
T TIGR01723 276 PADFAQMMADEALTQIHNLMEEKGID 301 (340)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2 22244555667777777888876
No 424
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.27 E-value=0.18 Score=58.29 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.+||+|||+|.-|.+.|..|++.| |+|++|++..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCC
Confidence 689999999999999999999999 9999999764
No 425
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.25 E-value=0.11 Score=53.10 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..|.|||+|.+|.+.|..|++.| ++|+++++..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEeccc
Confidence 357999999999999999999999 8999999874
No 426
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.24 E-value=0.74 Score=44.06 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.8
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
|+|.|.|+ |.+|..++..|++.| ++|++.+|+++.++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG--HKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH
Confidence 68999995 999999999999999 89999999987665554
No 427
>PRK09242 tropinone reductase; Provisional
Probab=93.22 E-value=0.82 Score=43.90 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=35.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~ 51 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLG--ADVLIVARDADALAQARD 51 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 468899985 899999999999999 899999999877665543
No 428
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.21 E-value=0.66 Score=46.02 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=36.4
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+.+..+.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG--ATVVAVARREDLLDAVAD 82 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 478999996 999999999999999 999999999877665544
No 429
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.18 E-value=0.13 Score=51.34 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+|+|||+|..|.+.|..|++.| ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec
Confidence 5899999999999999999999 999999987
No 430
>PRK07588 hypothetical protein; Provisional
Probab=93.18 E-value=0.1 Score=53.77 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.1
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|.|||+|..|.++|..|++.| ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 58999999999999999999999 89999997653
No 431
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.17 E-value=0.11 Score=53.55 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 468999999999999999999999 9999999753
No 432
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.8 Score=43.45 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.3
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFNDGLAAEARELA 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 478999996 999999999999999 89999999987665443
No 433
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.15 E-value=0.22 Score=48.71 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=37.2
Q ss_pred cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 125 ~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
+.+++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 2 ~~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 2 SSMKTWLITGVSSGFGRALAQAALAAG--HRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCCCEEEEecCCChHHHHHHHHHHhCc--CEEEEEeCCHHHHHHHHh
Confidence 34578999995 899999999999999 999999999877665544
No 434
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.08 E-value=0.29 Score=48.60 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=55.1
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++++||| ...+|.++|..|.+.|. +..|+++.... .++.+.++.||+
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADI 203 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADI 203 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCE
Confidence 368999999 55689999999998721 16888765321 256777889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++....+ + -.+++++|+++|++.
T Consensus 204 vV~AvG~p~~---i--~~~~ik~GavVIDvG 229 (287)
T PRK14181 204 IIAAIGVPLF---I--KEEMIAEKAVIVDVG 229 (287)
T ss_pred EEEccCCcCc---c--CHHHcCCCCEEEEec
Confidence 9999975432 1 135678899999874
No 435
>PRK07538 hypothetical protein; Provisional
Probab=93.07 E-value=0.11 Score=54.13 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=31.6
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
|+|.|||+|..|.++|..|+++| ++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence 68999999999999999999999 89999998763
No 436
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.07 E-value=0.31 Score=51.48 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=33.2
Q ss_pred hccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 123 ~~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+|+..-.|+|||.|..|.++|+.|.+.| ++|+++|..+
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~ 39 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSRE 39 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCC
Confidence 4555568999999999999999999999 9999999754
No 437
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.04 E-value=0.12 Score=53.70 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=31.6
Q ss_pred cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 125 ~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
|...+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 34568999999999999999999999 999999985
No 438
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.02 E-value=0.17 Score=53.30 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=32.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
+|||+|+|+|.-|.+.++.|.+.| .+|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc
Confidence 689999999999999999999999 999999966543
No 439
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.01 E-value=0.34 Score=48.36 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=54.4
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~----~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
..++|+||| ...+|.++|..|.+ .+ ..|+++.... .++.+.++.|
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--atVt~~hs~t----------------------------~~l~~~~~~A 207 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESN--CTVTICHSAT----------------------------KDIPSYTRQA 207 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCC--CEEEEEeCCc----------------------------hhHHHHHHhC
Confidence 468999999 55689999999987 45 7888876543 1466778899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+||.++....+ + -..++++|+++|++.
T Consensus 208 DIvI~Avg~~~l---i--~~~~vk~GavVIDVg 235 (295)
T PRK14174 208 DILIAAIGKARF---I--TADMVKPGAVVIDVG 235 (295)
T ss_pred CEEEEecCccCc---c--CHHHcCCCCEEEEee
Confidence 999999965432 1 124458899999875
No 440
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.99 E-value=0.33 Score=48.21 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=54.9
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~----~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a 200 (460)
..++++||| ...+|.+++..|.+ .+ ..|+++.... .++.+.++.|
T Consensus 156 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--AtVt~~hs~t----------------------------~~l~~~~~~A 205 (286)
T PRK14184 156 AGKKAVVVGRSNIVGKPLALMLGAPGKFAN--ATVTVCHSRT----------------------------PDLAEECREA 205 (286)
T ss_pred CCCEEEEECCCccchHHHHHHHhCCcccCC--CEEEEEeCCc----------------------------hhHHHHHHhC
Confidence 368999999 56789999999998 55 7888876542 1566778899
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
|+||.++....+ +. .+++++|+++|++.
T Consensus 206 DIVI~AvG~p~l---i~--~~~vk~GavVIDVG 233 (286)
T PRK14184 206 DFLFVAIGRPRF---VT--ADMVKPGAVVVDVG 233 (286)
T ss_pred CEEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence 999999975443 11 23457899999875
No 441
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=92.94 E-value=0.65 Score=40.75 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=72.6
Q ss_pred hhccCCCeEEEECcc----hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012596 122 DILERTNKVVVLGGG----SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (460)
Q Consensus 122 ~~~~~~~kI~IIGaG----~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~ 197 (460)
+++.+.++|+++|+- .-+-..+..|.++| ++|+=++..-.- +.+. | -++..++.+.-
T Consensus 11 ~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP~~~~-~eiL--G--------------~k~y~sL~dIp 71 (140)
T COG1832 11 EILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNPKLAG-EEIL--G--------------EKVYPSLADIP 71 (140)
T ss_pred HHHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCcccch-HHhc--C--------------chhhhcHHhCC
Confidence 345566899999984 67888999999999 999988874321 1111 1 13445777877
Q ss_pred CCCcEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccch
Q 012596 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (460)
Q Consensus 198 ~~aDiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~ 240 (460)
+..|+|-+..++..+.+++++.... +..++-+|-|+.+++
T Consensus 72 e~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~e 111 (140)
T COG1832 72 EPIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNEE 111 (140)
T ss_pred CCCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCHH
Confidence 7899999999999999988876553 467788999998863
No 442
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.93 E-value=0.92 Score=44.86 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=65.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~----G~~-----~~V~v~~r~~~------~~~~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (460)
..||.|+|+|+-|..+|..|.+. |.. .+++++|+.-- .+...+..-.. . ... .-..
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~-----~--~~~--~~~~ 95 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFAR-----K--DEE--KEGK 95 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHh-----h--cCc--ccCC
Confidence 47999999999999999999887 631 37888887521 01111110000 0 000 1124
Q ss_pred CHHhhcC--CCcEEEEcc--chhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 192 DAKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 192 ~~~ea~~--~aDiVilaV--p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.|+++ ++|++|=+. +.-..+++++.+.++.+ .-+|..++|-..
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~-~PIIFaLSNPt~ 144 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE-RPIIFALSNPTS 144 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC-CCEEEECCCcCC
Confidence 7889998 889888654 34467888888887653 568888888443
No 443
>PLN02650 dihydroflavonol-4-reductase
Probab=92.92 E-value=0.25 Score=50.16 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=48.0
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCCcEEE
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~aDiVi 204 (460)
.++|.|.|+ |.+|+.++..|++.| ++|++++|+.+..+.+..........+... +...+.-.....++++++|.||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG--YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC--CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 578999995 999999999999999 999999988655443322100000000000 0001111123456677899998
Q ss_pred Ecc
Q 012596 205 HAM 207 (460)
Q Consensus 205 laV 207 (460)
.+.
T Consensus 83 H~A 85 (351)
T PLN02650 83 HVA 85 (351)
T ss_pred EeC
Confidence 765
No 444
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.90 E-value=0.3 Score=52.00 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..++|+|||+|..|...|..|++.| ++|+++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 3579999999999999999999999 8999999764
No 445
>PRK08013 oxidoreductase; Provisional
Probab=92.86 E-value=0.13 Score=53.50 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.8
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..+|.|||+|..|.++|..|++.| ++|+++++.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence 368999999999999999999999 99999998754
No 446
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.85 E-value=0.13 Score=53.23 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
+++|.|||+|..|.++|..|+++| ++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 478999999999999999999999 999999997
No 447
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.83 E-value=0.95 Score=43.95 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
+.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG--AAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 4579999996 899999999999999 89999999987655443
No 448
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.81 E-value=0.14 Score=53.05 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCeEEEECcchHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~--G~~~~V~v~~r~~ 162 (460)
+.+|.|||+|.+|.++|..|++. | .+|+++++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCC
Confidence 36899999999999999999998 8 8999999875
No 449
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.79 E-value=0.1 Score=51.29 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=31.0
Q ss_pred eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012596 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (460)
Q Consensus 129 kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~ 164 (460)
+|.|+|+ |.+|+.++..|.+.| ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g--~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS--VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC--CcEEEEeCCCcc
Confidence 5889997 999999999999999 999999999764
No 450
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=92.74 E-value=0.14 Score=52.86 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.+|.|||+|..|.++|..|++.| .+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCC
Confidence 468999999999999999999999 8999999864
No 451
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.73 E-value=0.14 Score=54.57 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..++|+|||+|.-|.+.|..|.+.| ++|+++.++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~ 44 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQ 44 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 4589999999999999999999999 89999998764
No 452
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.71 E-value=0.75 Score=44.05 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=35.8
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+++..+++.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG--AAVAIADLNQDGANAVAD 49 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 468999997 999999999999999 899999999876555443
No 453
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.50 E-value=0.13 Score=54.38 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..++++|||||.-|.+.|+.|.+.| ++|+++.|+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCC
Confidence 3579999999999999999999999 99999998764
No 454
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.50 E-value=0.15 Score=52.92 Aligned_cols=34 Identities=29% Similarity=0.613 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|||+|.-|.++|..|++.| ++|+++++.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCC
Confidence 578999999999999999999999 9999999765
No 455
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=92.50 E-value=0.55 Score=45.81 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=63.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~----G~~-----~~V~v~~r~~------~~~~~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (460)
..||.|+|+|.-|..+|..|.+. |.. .+++++|+.- +.....++.-... .. + .....
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~----~~--~--~~~~~ 96 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARK----TN--P--EKDWG 96 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBS----SS--T--TT--S
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhcc----Cc--c--ccccc
Confidence 47999999999999999999988 852 4688888752 1111111110000 00 0 01114
Q ss_pred CHHhhcCCC--cEEEEcc--chhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 192 DAKTALLGA--DYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 192 ~~~ea~~~a--DiVilaV--p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.|+++.+ |++|=+. +.-..+++++.+.++.. .-+|..++|-..
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e-rPIIF~LSNPt~ 145 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE-RPIIFPLSNPTP 145 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS-SEEEEE-SSSCG
T ss_pred CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC-CCEEEECCCCCC
Confidence 788988887 9888653 45568899999888754 567888888544
No 456
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.49 E-value=1.1 Score=45.33 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~-~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil 205 (460)
..+|.|+|+|.+|...+..+++ .| ...|+++++++++.+.+++.+. .+ ...+..+. ..+|+||=
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~~~~--~~-----------~~~~~~~~-~g~d~viD 228 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSFADE--TY-----------LIDDIPED-LAVDHAFE 228 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhhcCc--ee-----------ehhhhhhc-cCCcEEEE
Confidence 5689999999999988777765 33 1579999999887776654221 00 01111121 24799998
Q ss_pred ccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 206 aVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
++........++...+.++++..++.+
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 887432333444455556666555543
No 457
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.48 E-value=0.93 Score=43.66 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=34.7
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
|+|.|.|+ |.+|.+++..|++.| ++|++.+|+++..+.+.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~ 42 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALK 42 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 68899995 789999999999999 899999999876655443
No 458
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.46 E-value=0.21 Score=52.91 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=32.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++|+|||+|.-|.+-|..|+++| |+|+++.+.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~ 157 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVAL 157 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCC
Confidence 489999999999999999999999 99999987653
No 459
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.44 E-value=0.91 Score=46.09 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r---~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV 203 (460)
..+|.|+|+|.+|...+..+...| .+|+++++ ++++.+.+.+.|.......+ ..+ . +. ......|+|
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~----~~~--~-~~-~~~~~~d~v 242 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGATYVNSSK----TPV--A-EV-KLVGEFDLI 242 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEEecCCc----cch--h-hh-hhcCCCCEE
Confidence 468999999999999988887778 78999998 56666666665542110000 000 0 01 112468999
Q ss_pred EEccchhcHHHHHHHhhhcCCCCCeEEEe
Q 012596 204 LHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 204 ilaVp~~~~~~vl~~i~~~l~~~~iIV~~ 232 (460)
|-++.... .+.+....++++..++.+
T Consensus 243 id~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 243 IEATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred EECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 99997542 223333445555555544
No 460
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.23 Score=50.56 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=52.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeC---CHHhhcCCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATT---DAKTALLGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~~-~~~l~~~g~~~~~~~~~~l~~~i~a~~---~~~ea~~~aDi 202 (460)
+++|||||.|..|..|+..-.+-| ++|.++|.+++. +..+....... ..+ .+.++++.||+
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG--~~v~vLdp~~~~PA~~va~~~i~~-------------~~dD~~al~ela~~~DV 65 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLG--IKVIVLDPDADAPAAQVADRVIVA-------------AYDDPEALRELAAKCDV 65 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CEEEEecCCCCCchhhcccceeec-------------CCCCHHHHHHHHhhCCE
Confidence 478999999999999999998888 999999987652 22222221110 112 35667789999
Q ss_pred E---EEccchhcHHHHHHH
Q 012596 203 C---LHAMPVQFSSSFLEG 218 (460)
Q Consensus 203 V---ilaVp~~~~~~vl~~ 218 (460)
| |--||.+.++.+...
T Consensus 66 iT~EfE~V~~~aL~~l~~~ 84 (375)
T COG0026 66 ITYEFENVPAEALEKLAAS 84 (375)
T ss_pred EEEeeccCCHHHHHHHHhh
Confidence 8 446777666655443
No 461
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=92.34 E-value=0.31 Score=48.00 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=56.5
Q ss_pred CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~-mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
..+++.|||.++ +|.+|+..|...+ ..|+++.... .++.+..+.+|+++
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~n--aTVtvcHs~T----------------------------~~l~~~~k~ADIvv 204 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNAN--ATVTVCHSRT----------------------------KDLASITKNADIVV 204 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCC--CEEEEEcCCC----------------------------CCHHHHhhhCCEEE
Confidence 368999999775 6999999999988 8999886532 25666778999999
Q ss_pred Eccchhc-HHHHHHHhhhcCCCCCeEEEec
Q 012596 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 205 laVp~~~-~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
.++--.. +. .+++++|+++|+..
T Consensus 205 ~AvG~p~~i~------~d~vk~gavVIDVG 228 (283)
T COG0190 205 VAVGKPHFIK------ADMVKPGAVVIDVG 228 (283)
T ss_pred EecCCccccc------cccccCCCEEEecC
Confidence 9997543 22 46778899999864
No 462
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.31 Score=46.14 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=35.4
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
||+.|.|+ |.+|..++..|++.| ++|++.+|+.++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g--~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG--HKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 57899986 899999999999999 999999999877765543
No 463
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.30 E-value=0.32 Score=49.47 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=34.9
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.|||.|.| +|.+|+.++..|++.| ++|++.+|+.+..+.+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~ 51 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDPAKSLHLL 51 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence 58999999 5999999999999999 89999999876554443
No 464
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.30 E-value=0.29 Score=49.80 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=33.1
Q ss_pred hccCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 123 ILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 123 ~~~~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..++|||.|.|+ |.+|+.++..|.+.| ++|++++|..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~ 49 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFS 49 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 3345689999995 999999999999998 8999999854
No 465
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=92.28 E-value=2.9 Score=41.11 Aligned_cols=159 Identities=15% Similarity=0.185 Sum_probs=90.5
Q ss_pred ceEEeCCHHhhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHHHHhCCC------CCC
Q 012596 186 NVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQP 258 (460)
Q Consensus 186 ~i~a~~~~~ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~~~lg~~------~~~ 258 (460)
++++++|-.|+++++|++|+-+|-.. ...+++.+.+++++|++|.+..+ +.+- .+...+.+ ++.. +++
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt~---~ly~~le~-l~R~DvgIsS~HP 202 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPTT---KFAKIFKD-LGRDDLNVTSYHP 202 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCHH---HHHHHHHH-hCcccCCeeccCC
Confidence 56778777888999999999999655 68899999999999998877553 4432 33344443 3432 222
Q ss_pred EEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCceEEE-cCChHHH--HHHHHHHHHHHHHHHHHh----c
Q 012596 259 FIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST-SSDVTGV--EIAGALKNVLAIAAGIVV----G 331 (460)
Q Consensus 259 ~~v~~gP~~a~e~~~g~~~~i~i~~~d~~~~~~l~~lL~~~g~~v~~-~~Di~g~--~~~kalkNv~ai~~g~~~----~ 331 (460)
.++-..| |+. .+.-+-.+.++.+++.++-++.+-..+. ..|+.+. .++.++.-+. ..|+.+ +
T Consensus 203 aaVPgt~--------Gq~-~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv~--~aGiL~Y~~~~ 271 (342)
T PRK00961 203 GAVPEMK--------GQV-YIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAIV--YAGILAYRDAV 271 (342)
T ss_pred CCCCCCC--------Cce-ecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHHH--HHHHHHHHHHH
Confidence 2221111 221 1111224678999999999987655543 3444332 1333322111 012211 1
Q ss_pred c-cCCCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012596 332 M-NLGNN--SMAALVAQGCSEIRWLATKMGAK 360 (460)
Q Consensus 332 ~-kl~~n--~~~al~~~~~~E~~~la~a~Gi~ 360 (460)
. .++.+ .....+..++.-+..|-+..|++
T Consensus 272 tqIlgAP~~mie~qa~eaL~tmasLme~~GI~ 303 (342)
T PRK00961 272 TQILGAPADFAQMMADEALTQITALMREEGID 303 (342)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 1 12222 22344556667777777888876
No 466
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.28 E-value=0.16 Score=52.89 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHH
Q 012596 128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPA 163 (460)
Q Consensus 128 ~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~ 163 (460)
|||+|||+|.-|.++|..|+++| + +|+++.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g--~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS--HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC--CCCEEEEecCCc
Confidence 68999999999999999999987 5 8999998764
No 467
>PRK08017 oxidoreductase; Provisional
Probab=92.27 E-value=0.35 Score=46.27 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=34.9
Q ss_pred CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 128 ~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
++|.|.|+ |.+|..++..|++.| ++|++++|+.+..+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g--~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG--YRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHhHHHH
Confidence 47999998 999999999999999 89999999987665443
No 468
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.27 E-value=0.38 Score=48.02 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=54.7
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++|+||| ...+|.++|..|.+.|. +..|+++.... .++.+..+.||+
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI 211 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------------------------KNLARHCQRADI 211 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCE
Confidence 368999999 66789999999998720 16788774321 256677889999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++.-..+ + -..++++|+++|++.
T Consensus 212 vVsAvGkp~~---i--~~~~ik~gavVIDvG 237 (297)
T PRK14168 212 LIVAAGVPNL---V--KPEWIKPGATVIDVG 237 (297)
T ss_pred EEEecCCcCc---c--CHHHcCCCCEEEecC
Confidence 9999864432 1 134578899999874
No 469
>PRK07208 hypothetical protein; Provisional
Probab=92.26 E-value=0.17 Score=53.70 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=33.6
Q ss_pred ccCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 124 ~~~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||++++|.|||+|.-|.+.|..|+++| ++|+++..++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~ 37 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADP 37 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 567789999999999999999999998 8999998765
No 470
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.22 E-value=0.31 Score=49.14 Aligned_cols=77 Identities=27% Similarity=0.455 Sum_probs=47.5
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC--CCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~~g~--~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
+.++|.|.|+ |.+|+.++..|++.|..++|++++|+......+.+... +..++ ...+.-..+..++++++|+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v-----~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFF-----IGDVRDKERLTRALRGVDY 77 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEE-----EccCCCHHHHHHHHhcCCE
Confidence 4578999995 99999999999987523689999988765444432210 01100 0001101133455678999
Q ss_pred EEEcc
Q 012596 203 CLHAM 207 (460)
Q Consensus 203 VilaV 207 (460)
||.+.
T Consensus 78 Vih~A 82 (324)
T TIGR03589 78 VVHAA 82 (324)
T ss_pred EEECc
Confidence 99754
No 471
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=92.22 E-value=0.84 Score=44.50 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCC---------CeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQ---------LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATT 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~---------~~V~v~~r~~~------~~~~l~~~g~~~~~~~~~~l~~~i~a~~ 191 (460)
..||.|+|+|+-|..+|..|.+.+.. .+++++|+.-- ......+.- .+|. ..-....
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~--~~~~------~~~~~~~ 96 (254)
T cd00762 25 EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHL--ARFA------NPERESG 96 (254)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHH--HHHc------CcccccC
Confidence 47999999999999999999887631 26777776521 010000000 0000 0001124
Q ss_pred CHHhhcC--CCcEEEEcc--chhcHHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 192 DAKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 192 ~~~ea~~--~aDiVilaV--p~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
++.|+++ ++|++|=.. |.-..+++++.+.++. +.-+|..++|-..
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence 7889998 899887543 4446788888887765 3568888888443
No 472
>PRK14851 hypothetical protein; Provisional
Probab=92.22 E-value=0.27 Score=54.68 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=30.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||+|+|+|.+|+..+..|++.|. -+++++|.+.
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GV-G~l~LvD~D~ 77 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGI-GRFHIADFDQ 77 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence 45899999999999999999999996 3677777654
No 473
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.18 E-value=1.1 Score=42.67 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~ 169 (460)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG--ASVVVADINAEGAERVA 47 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 478999997 999999999999999 99999999876554443
No 474
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=92.14 E-value=0.28 Score=49.85 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC----HHHHHHHHhhc---CCCc---cCCCCCC---CCceEEe--C
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD----PAVCQSINEKH---CNCR---YFPEQKL---PENVIAT--T 191 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~----~~~~~~l~~~g---~~~~---~~~~~~l---~~~i~a~--~ 191 (460)
++||||.|+|++|..+.+.|.+.++..++.++..+ .+.+..+-+.- .... ...+..+ .+.+.+. .
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 46999999999999999999876422345555332 22233332211 0000 0001111 1233333 2
Q ss_pred CHHhhc---CCCcEEEEccchhcHHHHHH
Q 012596 192 DAKTAL---LGADYCLHAMPVQFSSSFLE 217 (460)
Q Consensus 192 ~~~ea~---~~aDiVilaVp~~~~~~vl~ 217 (460)
++++.- .++|+||.|+.....++...
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~ 109 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGE 109 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHH
Confidence 454432 38999999998776555443
No 475
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.11 E-value=1.3 Score=42.41 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
..++|.|.|+ |.+|..++..|++.| ++|++.+|++++++.+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRA 51 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3578999996 999999999999999 899999999887765544
No 476
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.78 Score=43.66 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G--~~V~~~~r~~ 40 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAG--AHVVVNYRQK 40 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 478999996 999999999999999 8999998875
No 477
>PRK14852 hypothetical protein; Provisional
Probab=92.07 E-value=0.38 Score=55.07 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+..||+|||+|.+|+.++..|++.|. -+++++|.+.
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGV-G~I~L~D~D~ 366 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGI-GNFNLADFDA 366 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence 45899999999999999999999996 3677887664
No 478
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.03 E-value=0.18 Score=51.78 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~ 161 (460)
|.+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG--IKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC--CeEEEecCC
Confidence 468999999999999999999999 899999975
No 479
>PRK13984 putative oxidoreductase; Provisional
Probab=92.00 E-value=0.47 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
+.++|.|||+|..|...|..|.+.| ++|+++++.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4578999999999999999999999 9999998764
No 480
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.98 E-value=0.59 Score=49.40 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=29.8
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
||.|||+|..|.+.|..|.+.| ++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCC
Confidence 7999999999999999999999 9999999764
No 481
>PLN00198 anthocyanidin reductase; Provisional
Probab=91.95 E-value=0.31 Score=49.10 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=31.8
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
++++|.|.| +|-+|+.++..|.+.| ++|++..|+.+
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g--~~V~~~~r~~~ 44 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG--YAVNTTVRDPE 44 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence 357899999 8999999999999999 89988888764
No 482
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=91.93 E-value=0.21 Score=51.70 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=31.6
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCC
Confidence 368999999999999999999999 9999999876
No 483
>PRK07045 putative monooxygenase; Reviewed
Probab=91.92 E-value=0.2 Score=51.66 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
..++|.|||+|..|...|..|+++| ++|+++++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence 3578999999999999999999999 89999997763
No 484
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=91.87 E-value=2.2 Score=42.99 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=69.3
Q ss_pred cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--C
Q 012596 125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--A 200 (460)
Q Consensus 125 ~~~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~-v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--a 200 (460)
.+..||.|-| .|.-|+.-+..+.+.| .+|+ .++... .|.. +. ..++.+.++..|+.+. +
T Consensus 27 ~~~t~v~vqGitg~~g~~h~~~~~~yg--t~iv~GV~Pgk--------gg~~---v~----~~Gvpvy~sv~ea~~~~~~ 89 (317)
T PTZ00187 27 NKNTKVICQGITGKQGTFHTEQAIEYG--TKMVGGVNPKK--------AGTT---HL----KHGLPVFATVKEAKKATGA 89 (317)
T ss_pred cCCCeEEEecCCChHHHHHHHHHHHhC--CcEEEEECCCC--------CCce---Ee----cCCccccCCHHHHhcccCC
Confidence 4457999999 5999999999999999 6655 444332 0100 00 0124456788888776 8
Q ss_pred cEEEEccchhcHHHHHHHhhhcCCCCCeEEEeccCCccchhhhHHHHHH
Q 012596 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249 (460)
Q Consensus 201 DiVilaVp~~~~~~vl~~i~~~l~~~~iIV~~~~Gi~~~~~~~l~e~l~ 249 (460)
|+.+++||...+.+++.+..+. .=..+|.++.|+.......+.+.++
T Consensus 90 D~avI~VPa~~v~dai~Ea~~a--GI~~~ViiteGfpe~d~~~l~~~~~ 136 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEA--EIPLVVCITEGIPQHDMVKVKHALL 136 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHc--CCCEEEEECCCCchhhHHHHHHHHh
Confidence 9999999999888877665442 1135677788887654333334443
No 485
>PLN02477 glutamate dehydrogenase
Probab=91.82 E-value=0.69 Score=48.34 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=58.2
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCC----------HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENVIATTDAK 194 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~-v~~r~----------~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ 194 (460)
+.++|+|.|.|++|...|..|.+.| ..|+ +.|.+ .+.+.+..+.+.....+++ ....+..+
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~------a~~i~~~e 276 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKG--GKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPG------GDPIDPDD 276 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhcccc------ceEecCcc
Confidence 3589999999999999999999999 7888 66665 4444333333222221111 11111111
Q ss_pred hhcCCCcEEEEccchhc-HHHHHHHhhhcCCCCCeEEEeccCCc
Q 012596 195 TALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLE 237 (460)
Q Consensus 195 ea~~~aDiVilaVp~~~-~~~vl~~i~~~l~~~~iIV~~~~Gi~ 237 (460)
-...+||+++-|--... ..+-+..+ +-.+|+-..||-.
T Consensus 277 ~l~~~~DvliP~Al~~~I~~~na~~i-----~ak~I~egAN~p~ 315 (410)
T PLN02477 277 ILVEPCDVLIPAALGGVINKENAADV-----KAKFIVEAANHPT 315 (410)
T ss_pred ceeccccEEeeccccccCCHhHHHHc-----CCcEEEeCCCCCC
Confidence 12348999987754333 33334443 2357777777654
No 486
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.82 E-value=1.2 Score=45.11 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=57.9
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCcE
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADY 202 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~-~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDi 202 (460)
..+|.|+|+|.+|...+..+...| . .|++.++++++.+.+.+.|........ ..+..+.. ...|+
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~---------~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQ---------NDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCC---------cccHHHHhccCCCCCE
Confidence 468999999999999888777777 5 688899999888877776643111000 00111211 24799
Q ss_pred EEEccchhc-HHHHHHHhhhcCCCCCeEEEe
Q 012596 203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISL 232 (460)
Q Consensus 203 VilaVp~~~-~~~vl~~i~~~l~~~~iIV~~ 232 (460)
||-++.... +...+ +.++++..++.+
T Consensus 239 vid~~G~~~~~~~~~----~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFEVSGHPSSINTCL----EVTRAKGVMVQV 265 (343)
T ss_pred EEECCCCHHHHHHHH----HHhhcCCEEEEE
Confidence 999887532 33333 344555566554
No 487
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=91.81 E-value=0.48 Score=54.77 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=31.9
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+||+|||+|.-|...|..|++.| ++|+++++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEeccc
Confidence 3579999999999999999999999 9999999754
No 488
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.80 E-value=0.24 Score=47.67 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..||.|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 4789999999999999999999996 4799999775
No 489
>PRK09126 hypothetical protein; Provisional
Probab=91.78 E-value=0.21 Score=51.41 Aligned_cols=34 Identities=35% Similarity=0.621 Sum_probs=31.4
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|.-|.+.|..|+++| ++|+++++.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCC
Confidence 468999999999999999999999 9999999864
No 490
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.76 E-value=0.42 Score=47.58 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=55.3
Q ss_pred CCCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcE
Q 012596 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (460)
Q Consensus 126 ~~~kI~IIG-aG~mG~~~A~~La~~G~--~~~V~v~~r~~~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi 202 (460)
..++|+||| ...+|.+++..|.+.|. +..|+++.... .++.+..+.||+
T Consensus 156 ~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADI 207 (293)
T PRK14185 156 SGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADI 207 (293)
T ss_pred CCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCE
Confidence 368999999 56789999999998731 26788774321 256677789999
Q ss_pred EEEccchhcHHHHHHHhhhcCCCCCeEEEec
Q 012596 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (460)
Q Consensus 203 VilaVp~~~~~~vl~~i~~~l~~~~iIV~~~ 233 (460)
||.++....+ + -.+++++|+++|++.
T Consensus 208 vIsAvGkp~~---i--~~~~vk~gavVIDvG 233 (293)
T PRK14185 208 IIAALGQPEF---V--KADMVKEGAVVIDVG 233 (293)
T ss_pred EEEccCCcCc---c--CHHHcCCCCEEEEec
Confidence 9999985443 1 135678899999874
No 491
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.76 E-value=1.3 Score=43.07 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=34.8
Q ss_pred CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIG-aG~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.+++.|.| .|.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 45 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG--YLVIATMRNPEKQENLLS 45 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHH
Confidence 35678888 5899999999999999 999999999876655543
No 492
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.72 E-value=1.3 Score=42.24 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=36.0
Q ss_pred CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 126 ~~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
..++|.|.|+ |.+|..+|..|++.| ++|++.+|+++..+.+.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAA 47 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 3478999995 899999999999999 899999999876555443
No 493
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.68 E-value=1.3 Score=44.94 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=36.2
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG--ARLVLAARDEEALQAVAE 49 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 468999997 899999999999999 899999999887665543
No 494
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=91.65 E-value=1.1 Score=40.40 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=50.2
Q ss_pred CCeEEEEC-c-chHHHHHHHHHHhcCCCCeEEEEeCCHH-------HHHHH----HhhcCCCccCCCCCCCCceEEeCCH
Q 012596 127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDPA-------VCQSI----NEKHCNCRYFPEQKLPENVIATTDA 193 (460)
Q Consensus 127 ~~kI~IIG-a-G~mG~~~A~~La~~G~~~~V~v~~r~~~-------~~~~l----~~~g~~~~~~~~~~l~~~i~a~~~~ 193 (460)
.+||++|| . +++..+++..+++-| .+|+++....- .++.. .+.| ..+..++++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g------------~~i~~~~~~ 67 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFG--MEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG------------GKITITDDI 67 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTT--SEEEEESSGGGGGSHHHHHHHHHHHHHHHHT------------TEEEEESSH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcC--CEEEEECCCcccCCCCHHHHHHHHHHHHHhC------------CCeEEEeCH
Confidence 47999999 4 899999999999988 88888876551 12111 1222 246778999
Q ss_pred HhhcCCCcEEEEccch
Q 012596 194 KTALLGADYCLHAMPV 209 (460)
Q Consensus 194 ~ea~~~aDiVilaVp~ 209 (460)
+++++++|+|..-.-.
T Consensus 68 ~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 68 EEALKGADVVYTDRWQ 83 (158)
T ss_dssp HHHHTT-SEEEEESSS
T ss_pred HHhcCCCCEEEEcCcc
Confidence 9999999999876543
No 495
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.63 E-value=1.4 Score=44.68 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l~~ 170 (460)
.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.+
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~ 50 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRG--AKVVLLARGEEGLEALAA 50 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 467999995 999999999999999 899999999876665543
No 496
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.61 E-value=0.21 Score=51.01 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 129 kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
.|.|||+|.+|.+.|..|++.| .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEeccC
Confidence 5899999999999999999999 8999999853
No 497
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.58 E-value=2 Score=45.59 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=51.3
Q ss_pred CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCcEEE
Q 012596 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (460)
Q Consensus 126 ~~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~-~~~~~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi 204 (460)
+.++|.|||.|.++..=+..|.+.| .+|+++...- +.+..+.+.|. ..+.. .. -...+ ++++++||
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~~~-i~~~~-----~~----~~~~d-l~~~~lv~ 77 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADAGM-LTLVE-----GP----FDESL-LDTCWLAI 77 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhCCC-EEEEe-----CC----CChHH-hCCCEEEE
Confidence 3589999999999999999999998 8999997653 23444444331 11100 00 02233 67899999
Q ss_pred EccchhcHHH
Q 012596 205 HAMPVQFSSS 214 (460)
Q Consensus 205 laVp~~~~~~ 214 (460)
.|+.+..+..
T Consensus 78 ~at~d~~~n~ 87 (457)
T PRK10637 78 AATDDDAVNQ 87 (457)
T ss_pred ECCCCHHHhH
Confidence 9998765443
No 498
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.58 E-value=0.6 Score=49.24 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~~ 163 (460)
.++|.|+|.|..|.+.|+.|++.| ++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 468999999999999999999999 89999997653
No 499
>PRK06185 hypothetical protein; Provisional
Probab=91.56 E-value=0.22 Score=51.51 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=31.3
Q ss_pred CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012596 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (460)
Q Consensus 127 ~~kI~IIGaG~mG~~~A~~La~~G~~~~V~v~~r~~ 162 (460)
..+|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 468999999999999999999999 8999999864
No 500
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.53 E-value=1.4 Score=42.26 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=34.6
Q ss_pred CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012596 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (460)
Q Consensus 127 ~~kI~IIGa-G~mG~~~A~~La~~G~~~~V~v~~r~~~~~~~l 168 (460)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAA 50 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH
Confidence 478999995 999999999999999 8999999998765544
Done!