Citrus Sinensis ID: 012597

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
MACNQSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWIPKQIPQTTMEPKPEAENGVSSIKNQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCRIAPTVAFKQATSKSL
cccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccEEEEEEEccccccEEEcccccccccccccHHHHHHHHHcccccccccEEEEEcccccEEEEEccccccccHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHcHHHHHHHHHHHHHHHHcccccccEHHHHHHEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHccccEEEEcccHHHcccEEEEcccHcccccccccHHHHHHHccccccccccEEEEEccccEEEEEEcccHEcccHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccEEEEcccccEccccccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccc
macnqssemqepsidtdkLSYEIFSILEskflfgyddqklwipkqipqttmepkpeaengvssiknqrgKICILsidggggmrgILSGKALAYLEHALKsksgnpnariadyfdvaagtgvgGVFTAMIFAtkgqdrpifkaddTWRFLADQGkrfyrplsasssgsFLKRIfkggsgsgstgaasGGLEKAVKEMFTEkgrsltlrdtlkpvlipcydlssaapflfsradaletesfdFRLWEVCRatssepglfdpvlmrsvdgqtrcvavdgglamsnpTAAAITHVLhnkqefpfvrgVEDLLVLSLGTgqlleasydydqvknwrvkdwarpmarisgdgsAELVDQAVALAFgqskssnyvriqatgsslgrcghnvdvdpspsnVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERrscriaptvafkqatsksl
macnqssemqepsidtdKLSYEIFSILESKFLFGYDDQKLWIPKQIPQTTMEPKPEAEngvssiknqrGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRfyrplsasssgsFLKRIFKGgsgsgstgaasGGLEKAVKEMFTEKgrsltlrdtlKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRAtssepglfdpVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLleasydydqvknWRVKDWARPMARISGDGSAELVDQAVALAfgqskssnyVRIQATgsslgrcghnvdvdpsPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERrscriaptvafkqatsksl
MACNQSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWIPKQIPQTTMEPKPEAENGVSSIKNQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDvaagtgvggvftaMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKggsgsgstgaasggLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDllvlslgtgqllEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCRIAPTVAFKQATSKSL
*****************KLSYEIFSILESKFLFGYDDQKLWIPKQ**********************RGKICILSIDGGGGMRGILSGKALAYLEHALKSK*GNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRP*******************************************SLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKSSNYVRIQATGSSLGRCGHN**********KMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCRIAPTVAF********
**************DTDKLSYEIFSILESKFLFGYDDQK*********************************ILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANE**************************
**************DTDKLSYEIFSILESKFLFGYDDQKLWIPKQIPQTT**************KNQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGG************LEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCRIAPTVA*********
************SIDTDKLSYEIFSILESKFLFGYDDQKLWIP**********************NQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSC****************
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MACNQSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWIPKQIPQTTMEPKPEAENGVSSIKNQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCRIAPTVAFKQATSKSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query460 2.2.26 [Sep-21-2011]
Q2MY58387 Patatin group A-3 OS=Sola N/A no 0.680 0.808 0.267 7e-30
Q2MY54387 Patatin group J-1 OS=Sola N/A no 0.639 0.759 0.256 3e-25
Q2MY56387 Patatin group D-2 OS=Sola N/A no 0.639 0.759 0.256 5e-25
Q2MY40387 Patatin-11 OS=Solanum tub N/A no 0.634 0.754 0.257 6e-25
Q2MY43387 Patatin-08 OS=Solanum tub N/A no 0.639 0.759 0.253 1e-24
P15477386 Patatin-B2 OS=Solanum tub N/A no 0.636 0.759 0.256 2e-24
P15478386 Patatin-T5 OS=Solanum tub N/A no 0.636 0.759 0.259 3e-24
Q3YJT0374 Patatin-2-Kuras 4 OS=Sola N/A no 0.636 0.783 0.256 3e-24
Q2MY51386 Patatin group M-3 OS=Sola N/A no 0.636 0.759 0.253 3e-24
Q3YJT2386 Patatin-2-Kuras 2 OS=Sola N/A no 0.636 0.759 0.256 4e-24
>sp|Q2MY58|PATA3_SOLTU Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function desciption
 Score =  132 bits (331), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 168/348 (48%), Gaps = 35/348 (10%)

Query: 71  ICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIF 130
           + +LSIDGGG ++GI+ G  L +LE  L+    N +AR+ADYFDV  GT  GG+ TAMI 
Sbjct: 29  VTVLSIDGGG-VKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMIT 87

Query: 131 ATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLE 190
                +RP   A++   F  + G   +     SS+G F    + G               
Sbjct: 88  TPNENNRPFAAANEIVPFYFEHGPHIFN----SSTGQFFGPKYDG--------------- 128

Query: 191 KAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRAT 250
           K + ++  EK     +   L  V I  +D+ +  P +F++++  ++   D +++++C +T
Sbjct: 129 KYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYST 188

Query: 251 SSEPGLFDP--VLMRSVDG-QTRCVAVDGGLA-MSNPTAAAITHVLHNKQEFPFVRGVED 306
           ++ P  F P      +++G +     VDG +A +++P   +++      QE P    +  
Sbjct: 189 AAAPTYFPPHYFATNTINGDKYEFNLVDGAVATVADPALLSVSVATRRAQEDPAFASIRS 248

Query: 307 L-----LVLSLGTGQLLE--ASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAF 359
           L     L+LSLGTG   E   ++  ++   W    W   + +++   S+ + D  ++  F
Sbjct: 249 LNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWMLVIQQMTEAASSYMTDYYLSTVF 308

Query: 360 GQSKS-SNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQ 406
               S +NY+R+Q   ++L       D D S +N+++L    E +LK+
Sbjct: 309 QDLHSQNNYLRVQE--NALTGTTTKAD-DASEANMELLAQVGENLLKK 353
Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q2MY54|PATJ1_SOLTU Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY56|PATD2_SOLTU Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY40|PAT11_SOLTU Patatin-11 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY43|PAT08_SOLTU Patatin-08 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P15477|PATB2_SOLTU Patatin-B2 OS=Solanum tuberosum GN=PATB2 PE=1 SV=1 Back     alignment and function description
>sp|P15478|PATT5_SOLTU Patatin-T5 OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q3YJT0|PT2K4_SOLTU Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1 Back     alignment and function description
>sp|Q2MY51|PATM3_SOLTU Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q3YJT2|PT2K2_SOLTU Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
224113017464 predicted protein [Populus trichocarpa] 0.984 0.976 0.791 0.0
224097957458 predicted protein [Populus trichocarpa] 0.971 0.975 0.798 0.0
225449066458 PREDICTED: patatin group A-3-like [Vitis 0.986 0.991 0.816 0.0
255577393467 Patatin T5 precursor, putative [Ricinus 0.984 0.970 0.796 0.0
449449326465 PREDICTED: patatin group A-3-like isofor 0.965 0.954 0.774 0.0
356576219454 PREDICTED: patatin group A-3-like [Glyci 0.976 0.988 0.784 0.0
356535647464 PREDICTED: patatin group A-3-like [Glyci 0.982 0.974 0.755 0.0
297827509495 hypothetical protein ARALYDRAFT_903163 [ 0.954 0.886 0.693 0.0
297820248504 hypothetical protein ARALYDRAFT_485912 [ 0.945 0.863 0.693 0.0
15225054499 PATATIN-like protein 6 [Arabidopsis thal 0.945 0.871 0.694 0.0
>gi|224113017|ref|XP_002316362.1| predicted protein [Populus trichocarpa] gi|222865402|gb|EEF02533.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/469 (79%), Positives = 415/469 (88%), Gaps = 16/469 (3%)

Query: 1   MACNQSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWIPKQIPQTTMEPKPEAENG 60
           M  NQSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWIPKQ+   T+E KPE++N 
Sbjct: 1   MEYNQSSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWIPKQVSPETIEAKPESQNP 60

Query: 61  ----------VSSIKNQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIA 110
                     +S+IKNQRGKICILSIDGG  ++GI+SGKALAYLE+ALK KSGNP+ARIA
Sbjct: 61  SVLTENNSSWLSAIKNQRGKICILSIDGGSSLKGIISGKALAYLENALKVKSGNPDARIA 120

Query: 111 DYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLK 170
           DYFDVAAGTG+GG+FTAM+F TK   RPI KA++TW+FLADQGK+FY       +G F K
Sbjct: 121 DYFDVAAGTGIGGIFTAMLFGTKDHSRPILKAEETWKFLADQGKKFY----TYGNGGFFK 176

Query: 171 RIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSR 230
           R F+GG+ +GST AA+ GLEKA+KE F++KGR+LTL+DTLKPVLIPCYDLSS APFLFSR
Sbjct: 177 RFFRGGA-TGST-AATAGLEKAMKETFSDKGRNLTLKDTLKPVLIPCYDLSSTAPFLFSR 234

Query: 231 ADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITH 290
           ADALET+SFDFRLWEVCRATS+EPGLFDPVLM S+DGQTRC+AVDGGLAMSNP AAAITH
Sbjct: 235 ADALETDSFDFRLWEVCRATSAEPGLFDPVLMGSIDGQTRCLAVDGGLAMSNPAAAAITH 294

Query: 291 VLHNKQEFPFVRGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAEL 350
           VLHNKQEFPFVRGVEDLLVLSLGTGQ+LE SY+Y+QVKNWR K WARPMARISGDGSA+ 
Sbjct: 295 VLHNKQEFPFVRGVEDLLVLSLGTGQILEVSYEYEQVKNWRAKQWARPMARISGDGSADS 354

Query: 351 VDQAVALAFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVE 410
           VDQAVA+AFGQ +SSNYVRIQA GS+LGRCG NVD DPSP+NVKMLIG AEEMLKQKNVE
Sbjct: 355 VDQAVAMAFGQCRSSNYVRIQANGSNLGRCGPNVDTDPSPNNVKMLIGIAEEMLKQKNVE 414

Query: 411 SVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCRIAPTVAFKQATSKS 459
           SVLFGGKRI EQSNFEKLDWFA +LVLEH+RRSCRIAPTVAFKQA +K+
Sbjct: 415 SVLFGGKRIGEQSNFEKLDWFAEQLVLEHQRRSCRIAPTVAFKQAATKT 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224097957|ref|XP_002311098.1| predicted protein [Populus trichocarpa] gi|222850918|gb|EEE88465.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225449066|ref|XP_002275108.1| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577393|ref|XP_002529576.1| Patatin T5 precursor, putative [Ricinus communis] gi|223530952|gb|EEF32810.1| Patatin T5 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449449326|ref|XP_004142416.1| PREDICTED: patatin group A-3-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356576219|ref|XP_003556231.1| PREDICTED: patatin group A-3-like [Glycine max] Back     alignment and taxonomy information
>gi|356535647|ref|XP_003536356.1| PREDICTED: patatin group A-3-like [Glycine max] Back     alignment and taxonomy information
>gi|297827509|ref|XP_002881637.1| hypothetical protein ARALYDRAFT_903163 [Arabidopsis lyrata subsp. lyrata] gi|297327476|gb|EFH57896.1| hypothetical protein ARALYDRAFT_903163 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297820248|ref|XP_002878007.1| hypothetical protein ARALYDRAFT_485912 [Arabidopsis lyrata subsp. lyrata] gi|297323845|gb|EFH54266.1| hypothetical protein ARALYDRAFT_485912 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15225054|ref|NP_181455.1| PATATIN-like protein 6 [Arabidopsis thaliana] gi|3402683|gb|AAC28986.1| similar to latex allergen from Hevea brasiliensis [Arabidopsis thaliana] gi|17065144|gb|AAL32726.1| putative patatin protein [Arabidopsis thaliana] gi|23397241|gb|AAN31902.1| unknown protein [Arabidopsis thaliana] gi|31711904|gb|AAP68308.1| At2g39220 [Arabidopsis thaliana] gi|330254553|gb|AEC09647.1| PATATIN-like protein 6 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
TAIR|locus:2056088499 PLP6 "PATATIN-like protein 6" 0.954 0.879 0.655 3.7e-151
TAIR|locus:2082702488 pPLAIIIbeta "patatin-related p 0.856 0.807 0.643 1.6e-132
TAIR|locus:2077269384 PLP9 "PATATIN-like protein 9" 0.719 0.861 0.371 1.4e-56
TAIR|locus:2114995414 PLP1 [Arabidopsis thaliana (ta 0.836 0.929 0.251 2.6e-20
TAIR|locus:2115065428 PLP4 "AT4G37050" [Arabidopsis 0.778 0.836 0.261 5.2e-19
TAIR|locus:2066286407 PLA2A "phospholipase A 2A" [Ar 0.784 0.886 0.244 1.9e-15
TAIR|locus:2158337401 AT5G43590 [Arabidopsis thalian 0.684 0.785 0.261 3.9e-15
UNIPROTKB|Q9KVG8355 VC0178 "Patatin-related protei 0.482 0.625 0.249 5.8e-05
TIGR_CMR|VC_0178355 VC_0178 "patatin family protei 0.482 0.625 0.249 5.8e-05
TAIR|locus:2056088 PLP6 "PATATIN-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
 Identities = 300/458 (65%), Positives = 343/458 (74%)

Query:     6 SSEMQEPSIDTDKLSYEIFSILESKFLFGYDDQ-KLWIPKQ---IP-QTTMEPKP-EAEN 59
             +++MQEPSI+TDKLSYEIFSILESKFLFGYDD  KL   +     P Q T  P   EA N
Sbjct:    35 ATDMQEPSIETDKLSYEIFSILESKFLFGYDDDLKLMESRSRDPSPEQETASPAMVEALN 94

Query:    60 GV--SSIKNQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDXXX 117
             GV   ++KNQRGK+C+LSID GG MRGI+ GKALAYLEHALKSKSG+PNARIADYFD   
Sbjct:    95 GVVPGTVKNQRGKVCVLSIDSGG-MRGIIPGKALAYLEHALKSKSGDPNARIADYFDVAS 153

Query:   118 XXXXXXXXXXMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKXXX 177
                       M+FA+   +RPIFKA+DTWRFLA +GK FY      S    L R+ K   
Sbjct:   154 GSGIGGIFTAMLFASSDGNRPIFKAEDTWRFLAMKGKSFYN----KSPPGILNRVMKTGS 209

Query:   178 XXXXXXXXXXXLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETE 237
                        LEKA+KE F E    LTL+DTLKPVLIPCYDL+S+APFLFSRADALET+
Sbjct:   210 GGSGGSGSK--LEKAMKESFEE----LTLKDTLKPVLIPCYDLTSSAPFLFSRADALETD 263

Query:   238 SFDFRLWEVCRATSSEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQE 297
              +DF+LWEVCRAT +EPG+F+PV MRSVDG+TRCVAVDGGLAMSNPTAAAITHVLHNKQE
Sbjct:   264 GYDFKLWEVCRATWAEPGVFEPVEMRSVDGKTRCVAVDGGLAMSNPTAAAITHVLHNKQE 323

Query:   298 FPFVRGVEDXXXXXXXXXXXXEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVAL 357
             FPFVRGVED            +  YD D+V  W+ K WARP  RIS DG+A+ VDQAV++
Sbjct:   324 FPFVRGVEDLLVLSLGTGQLVDVKYDCDKVMKWKAKHWARPAVRISADGAADTVDQAVSM 383

Query:   358 AFGQSKSSNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGK 417
             AFGQ + SNYVRIQA GSS G C  N+D D SPSNV ML+G AEEMLKQKN ESVLFGGK
Sbjct:   384 AFGQCRRSNYVRIQANGSSFGPCKPNIDTDASPSNVNMLVGVAEEMLKQKNAESVLFGGK 443

Query:   418 RIAEQSNFEKLDWFANELVLEHERRSCRIAPTVAFKQA 455
             +I E+SN+EKLDW A ELVLEH+RRSCRIAPTVAFKQ+
Sbjct:   444 KINEESNYEKLDWLAGELVLEHQRRSCRIAPTVAFKQS 481
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0045735 "nutrient reservoir activity" evidence=ISS
TAIR|locus:2082702 pPLAIIIbeta "patatin-related phospholipase IIIbeta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077269 PLP9 "PATATIN-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVG8 VC0178 "Patatin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0178 VC_0178 "patatin family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00102158
hypothetical protein (465 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
cd07199258 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph 3e-67
cd07215329 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p 2e-59
cd07214349 cd07214, Pat17_isozyme_like, Patatin-like phosphol 7e-54
COG3621394 COG3621, COG3621, Patatin [General function predic 1e-19
cd07217344 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like p 4e-18
cd07213288 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like p 1e-16
pfam01734189 pfam01734, Patatin, Patatin-like phospholipase 1e-15
cd07211308 cd07211, Pat_PNPLA8, Patatin-like phospholipase do 2e-14
cd07216309 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like p 9e-14
cd07212312 cd07212, Pat_PNPLA9, Patatin-like phospholipase do 7e-11
cd07208266 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical pa 5e-05
cd07207194 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like pr 2e-04
>gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information 
 Score =  215 bits (550), Expect = 3e-67
 Identities = 100/335 (29%), Positives = 138/335 (41%), Gaps = 79/335 (23%)

Query: 73  ILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFAT 132
           ILS+DGGG +RGI+  + LA LE  L   S     RIAD FD+ AGT  GG+    +   
Sbjct: 1   ILSLDGGG-IRGIIPAEILAELEKRLGKPS-----RIADLFDLIAGTSTGGIIALGLALG 54

Query: 133 KGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKA 192
                         R+ A++    Y            ++IF                   
Sbjct: 55  --------------RYSAEELVELYE--------ELGRKIFP------------------ 74

Query: 193 VKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALE-TESFDFRLWEVCRATS 251
                               VL+  YDLS+  P +FS  DA E  +  DF+LW+V RATS
Sbjct: 75  -------------------RVLVTAYDLSTGKPVVFSNYDAEEPDDDDDFKLWDVARATS 115

Query: 252 SEPGLFDPVLMRSVDGQTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLS 311
           + P  F P ++ S  G      VDGG+A +NP   A+   L            +D+LVLS
Sbjct: 116 AAPTYFPPAVIES--GGDEGAFVDGGVAANNPALLALAEALRL-----LAPDKDDILVLS 168

Query: 312 LGTGQLLEASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFG-QSKSSNYVRI 370
           LGTG    +S    +   W    W RP+  I  D  ++ VDQ + L FG      NY+RI
Sbjct: 169 LGTGT-SPSSSSSKKASRWGGLGWGRPLLDILMDAQSDGVDQWLDLLFGSLDSKDNYLRI 227

Query: 371 QATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLK 405
                           D S +N+  L  AA E+++
Sbjct: 228 NPPLPGPIPA----LDDASEANLLALDSAAFELIE 258

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum. Length = 258
>gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria Back     alignment and domain information
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants Back     alignment and domain information
>gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only] Back     alignment and domain information
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>gnl|CDD|132847 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 460
cd07214349 Pat17_isozyme_like Patatin-like phospholipase of p 100.0
cd07215329 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa 100.0
cd07211308 Pat_PNPLA8 Patatin-like phospholipase domain conta 100.0
cd07213288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 100.0
cd07216309 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa 100.0
cd07217344 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa 100.0
cd07212312 Pat_PNPLA9 Patatin-like phospholipase domain conta 100.0
cd07199258 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas 100.0
KOG4231763 consensus Intracellular membrane-bound Ca2+-indepe 100.0
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 100.0
COG3621394 Patatin [General function prediction only] 100.0
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 99.97
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 99.97
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 99.97
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 99.96
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 99.96
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 99.95
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 99.95
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 99.94
PRK10279300 hypothetical protein; Provisional 99.93
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 99.9
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 99.88
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 99.88
cd07219382 Pat_PNPLA1 Patatin-like phospholipase domain conta 99.87
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 99.87
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 99.87
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 99.86
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 99.86
PF01734204 Patatin: Patatin-like phospholipase This Prosite f 99.86
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 99.86
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 99.85
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 99.82
cd07223405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 99.74
COG4667292 Predicted esterase of the alpha-beta hydrolase sup 99.73
TIGR03607 739 patatin-related protein. This bacterial protein fa 99.72
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 99.7
cd01819155 Patatin_and_cPLA2 Patatins and Phospholipases. Pat 99.7
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 99.7
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 99.67
KOG29681158 consensus Predicted esterase of the alpha-beta hyd 99.62
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 99.18
KOG2214543 consensus Predicted esterase of the alpha-beta hyd 99.14
KOG3773354 consensus Adiponutrin and related vesicular transp 98.35
cd00147438 cPLA2_like Cytosolic phospholipase A2, catalytic d 96.74
cd07202430 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase 88.98
cd07201 541 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and 84.78
PF01735 491 PLA2_B: Lysophospholipase catalytic domain; InterP 80.7
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants Back     alignment and domain information 
Probab=100.00  E-value=1.9e-68  Score=545.25  Aligned_cols=325  Identities=33%  Similarity=0.538  Sum_probs=275.0

Q ss_pred             CCceEEEEecCCCcchHHHHHHHHHHHHHHhhccCCCCCCccCCCcCEEEecchHHHHHHHHHccCCCCCcCCCHHHHHH
Q 012597           68 RGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWR  147 (460)
Q Consensus        68 ~~~~rILsLDGG~GiRGi~~~~iL~~Le~~l~~~~G~p~~~i~d~FDlIaGTStGgiiA~~L~~~~~~grp~~s~~e~~~  147 (460)
                      ++++|||||||| |+||+++++||++||++++++.| |+++|+++||+|||||||||||++|++++.+++|+++++|+++
T Consensus         1 ~~~~rILslDGG-GiRGi~~a~iL~~lE~~l~~~~g-~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~   78 (349)
T cd07214           1 GKFITVLSIDGG-GIRGIIPATILEFLEGKLQELDG-PDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQ   78 (349)
T ss_pred             CCceEEEEECCC-chhhHHHHHHHHHHHHHHHHhcC-CCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHH
Confidence            478999999999 99999999999999999988777 7889999999999999999999999999888999999999999


Q ss_pred             HHHHhcccccCCCCcCCchhhHHHhhhCCCCCCCCCCCchHHHHHHHHHHHhhccCcccccCCCCEEEEeeecCCCceEE
Q 012597          148 FLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFL  227 (460)
Q Consensus       148 ~y~~~~~~IF~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~Le~~L~~~l~~~fg~~~L~d~~~~v~I~a~d~~~~~p~v  227 (460)
                      +|.+.+.+||+......  ..+++.++..   .+++|+++.|+++|++    +||+.+|.|+.++++|||||+.+++|++
T Consensus        79 ~y~~~~~~iF~~~~~~~--~~~~~~~~~~---~~~~y~~~~L~~~L~~----~~gd~~l~d~~~~v~I~a~dl~~~~p~~  149 (349)
T cd07214          79 FYLENGPKIFPQSTGQF--EDDRKKLRSL---LGPKYDGVYLHDLLNE----LLGDTRLSDTLTNVVIPTFDIKLLQPVI  149 (349)
T ss_pred             HHHHhhHHhcCCCcccc--hhHHHHHHHh---ccCccCcHHHHHHHHH----HhccccHhhhCCceEEEeEECCCCCeEE
Confidence            99999999997543210  1123333321   2367999999888775    8999999999999999999999999999


Q ss_pred             eecCCCCcCCcccCcHHHHHHHhcCCCCCCccEEEecCC--Ccc-ceeeecCCCCCCCchHHHHHHHHhcCC-CC---CC
Q 012597          228 FSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVD--GQT-RCVAVDGGLAMSNPTAAAITHVLHNKQ-EF---PF  300 (460)
Q Consensus       228 F~~~~~~~~~~~~~~l~da~rASsAaP~yF~p~~i~~~d--G~~-~~~~vDGGv~~NNP~~~Al~ea~~~k~-~~---p~  300 (460)
                      |+++++......++++|||||||||||+||||+++.+.+  |+. .+.||||||++|||+++|+.||++... .|   |.
T Consensus       150 F~~~~~~~~~~~~~~l~da~rASSAaPtyFpp~~i~~~~~~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~  229 (349)
T cd07214         150 FSSSKAKNDKLTNARLADVCISTSAAPTYFPAHYFTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFAS  229 (349)
T ss_pred             EeCccccCCcccCcCHHHHHHHhcccccccCCeEeecccCCCCcceEEEecCceecCCHHHHHHHHHHHhhhccCccccc
Confidence            999987766677899999999999999999999997533  211 257999999999999999999986432 23   22


Q ss_pred             C--CCCCcEEEEEcCCCCccccccccccccccccccch-----hHHHHHhhccchhHHHHHHHHHhccC-CCCCEEEecc
Q 012597          301 V--RGVEDLLVLSLGTGQLLEASYDYDQVKNWRVKDWA-----RPMARISGDGSAELVDQAVALAFGQS-KSSNYVRIQA  372 (460)
Q Consensus       301 ~--~~~~~~lvlSLGTG~~~~~~~~~~~~~~wg~~~W~-----~~l~~i~~~~~sd~vd~~~~~l~~~~-~~~~Y~Ri~~  372 (460)
                      .  .+.++++|||||||... ..+.++...+||.++|.     .||+++++++++|++|++++++|+.+ .+++|+|||+
T Consensus       230 ~~~~~~~~i~vlSiGTG~~~-~~~~~~~~~~wG~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~  308 (349)
T cd07214         230 IKPLDYKKLLVLSLGTGSAE-ESYKYNAAAKWGLITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQD  308 (349)
T ss_pred             ccCCCCCeEEEEEecCCCcc-cccChhhhccCCeeecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence            1  14578999999999764 34566667899999998     79999999999999999999999654 4689999999


Q ss_pred             CCCCCCCCCCCCcCCCChHhHHHHHHHHHHHHhcc
Q 012597          373 TGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQK  407 (460)
Q Consensus       373 ~~~~~~~~~~~~lDdas~~n~~~L~~~a~~~l~~~  407 (460)
                      +... +  ....|||+|++|++.|+++|+++|+++
T Consensus       309 ~~~~-~--~~~~~d~~~~~ni~~L~~~a~~~l~~~  340 (349)
T cd07214         309 DSLT-G--TASSVDDATEENLEKLVEIGKKLLKKP  340 (349)
T ss_pred             CCCC-C--cccCcccCCHHHHHHHHHHHHHHHhCc
Confidence            8764 2  236799999999999999999999885

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria Back     alignment and domain information
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase Back     alignment and domain information
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>COG3621 Patatin [General function prediction only] Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>TIGR03607 patatin-related protein Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids Back     alignment and domain information
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent Back     alignment and domain information
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
1oxw_A373 The Crystal Structure Of Semet Patatin Length = 373 3e-11
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 35/328 (10%)
Query: 91  LAYLEHALKSKSGNPNARIADYFDXXXXXXXXXXXXXMIFATKGQDRPIFKADDTWRFLA 150
           L +LE  L+    N +AR+ADYFD              I      +RP   A +   F  
Sbjct: 35  LEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAXISTPNENNRPFAAAKEIVPFYF 94
Query: 151 DQGKRFYRPLSASSSGSFLKRIFKXXXXXXXXXXXXXXLEKAVKEMFTEKGRSLTLRDTL 210
           + G + + P     SG  L   +                 K + ++  EK     +   L
Sbjct: 95  EHGPQIFNP-----SGQILGPKYDG---------------KYLXQVLQEKLGETRVHQAL 134
Query: 211 KPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDP---VLMRSVDG 267
             V+I  +D+ +  P +F++++   +   D + +++  +T++ P  F P   V   S   
Sbjct: 135 TEVVISSFDIKTNKPVIFTKSNLANSPELDAKXYDISYSTAAAPTYFPPHYFVTNTSNGD 194
Query: 268 QTRCVAVDGGLA-MSNPTAAAI---THVLHNKQEFPFVRGVEDXXXXXXX----XXXXXE 319
           +     VDG +A +++P   +I   T +      F  +R +                  +
Sbjct: 195 EYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKXLLLSLGTGTTSEFD 254
Query: 320 ASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQSKS-SNYVRIQATGSSLG 378
            +Y   +   W    W   + + +   S+   D  ++ AF    S +NY+R+Q   ++L 
Sbjct: 255 KTYTAKEAATWTAVHWXLVIQKXTDAASSYXTDYYLSTAFQALDSKNNYLRVQE--NALT 312
Query: 379 RCGHNVDVDPSPSNVKMLIGAAEEMLKQ 406
                 D D S +N ++L+   E +LK+
Sbjct: 313 GTTTEXD-DASEANXELLVQVGENLLKK 339

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
1oxw_A373 Patatin; alpha/beta class fold with approximately 4e-77
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373 Back     alignment and structure
 Score =  244 bits (623), Expect = 4e-77
 Identities = 96/401 (23%), Positives = 172/401 (42%), Gaps = 45/401 (11%)

Query: 58  ENGVSSIKNQRGK-ICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVA 116
            +       Q G+ + +LSIDGGG +RGI+    L +LE  L+    N +AR+ADYFDV 
Sbjct: 2   HHHHHHAMAQLGEMVTVLSIDGGG-IRGIIPATILEFLEGQLQEMDNNADARLADYFDVI 60

Query: 117 AGTGVGGVFTAMIFATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGG 176
            GT  GG+ TAMI      +RP   A +   F  +                   +IF   
Sbjct: 61  GGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFE----------------HGPQIFNPS 104

Query: 177 SGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALET 236
                       L + ++E   E      +   L  V+I  +D+ +  P +F++++   +
Sbjct: 105 GQILGPKYDGKYLMQVLQEKLGET----RVHQALTEVVISSFDIKTNKPVIFTKSNLANS 160

Query: 237 ESFDFRLWEVCRATSSEPGLFDPVLM---RSVDGQTRCVAVDGGL-AMSNPTAAAITHVL 292
              D +++++  +T++ P  F P       S   +     VDG +  +++P   +I+   
Sbjct: 161 PELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVAT 220

Query: 293 HNKQEFPFVRGV-----EDLLVLSLGTGQ--LLEASYDYDQVKNWRVKDWARPMARISGD 345
              Q+ P    +     + +L+LSLGTG     + +Y   +   W    W   + +++  
Sbjct: 221 RLAQKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDA 280

Query: 346 GSAELVDQAVALAFGQSKS-SNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEML 404
            S+ + D  ++ AF    S +NY+R+Q     L      +D D S +N+++L+   E +L
Sbjct: 281 ASSYMTDYYLSTAFQALDSKNNYLRVQENA--LTGTTTEMD-DASEANMELLVQVGENLL 337

Query: 405 KQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCR 445
           K+   E           ++  E L  FA  L    + R+ +
Sbjct: 338 KKPVSEDNP--------ETYEEALKRFAKLLSDRKKLRANK 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
1oxw_A373 Patatin; alpha/beta class fold with approximately 100.0
4akf_A 577 VIPD; transferase; 2.90A {Legionella pneumophila} 99.91
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 99.9
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 94.55
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Back     alignment and structure
Probab=100.00  E-value=1.5e-67  Score=542.25  Aligned_cols=355  Identities=26%  Similarity=0.475  Sum_probs=296.6

Q ss_pred             CccccCCCCceEEEEecCCCcchHHHHHHHHHHHHHHhhccCCCCCCccCCCcCEEEecchHHHHHHHHHccCCCCCcCC
Q 012597           61 VSSIKNQRGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIF  140 (460)
Q Consensus        61 ~~~~~~~~~~~rILsLDGG~GiRGi~~~~iL~~Le~~l~~~~G~p~~~i~d~FDlIaGTStGgiiA~~L~~~~~~grp~~  140 (460)
                      |.+...+++++++|||||| |+||+++++||++||++++++.|.|+++++++||+|+|||+|||+|++|+++...+||+|
T Consensus         6 ~~~~~~~~~~~~~LsLdGG-G~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~   84 (373)
T 1oxw_A            6 HHAMAQLGEMVTVLSIDGG-GIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFA   84 (373)
T ss_dssp             ------CCSCEEEEEECCC-GGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSS
T ss_pred             chhhcCCCCCeEEEEEcCC-cHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcC
Confidence            3444578889999999999 999999999999999999888886578899999999999999999999999987789999


Q ss_pred             CHHHHHHHHHHhcccccCCCCcCCchhhHHHhhhCCCCCCCCCCCchHHHHHHHHHHHhhccCcccccCCCCEEEEeeec
Q 012597          141 KADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDL  220 (460)
Q Consensus       141 s~~e~~~~y~~~~~~IF~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~Le~~L~~~l~~~fg~~~L~d~~~~v~I~a~d~  220 (460)
                      +++++.++|.+.++++|....          .+.      .+.|+++.|++.|++    +||+.+|.|+.++++|++||+
T Consensus        85 s~~el~~~~~~~~~~iF~~~~----------~l~------~~~~~~~~L~~~l~~----~~~~~~l~d~~~~~~i~atd~  144 (373)
T 1oxw_A           85 AAKEIVPFYFEHGPQIFNPSG----------QIL------GPKYDGKYLMQVLQE----KLGETRVHQALTEVVISSFDI  144 (373)
T ss_dssp             CGGGHHHHHHHHHHHHTCCCC----------CSS------SCSCCCHHHHHHHHH----HHTTCBGGGCSSEEEEEEEET
T ss_pred             CHHHHHHHHHHhhHhhcCCCC----------ccc------cCCcCcHHHHHHHHH----HHCcCcHHHcCCCEEEEeEEC
Confidence            999999999999999998421          111      246888888887765    889999999999999999999


Q ss_pred             CCCceEEeecCCCCcCCcccCcHHHHHHHhcCCCCCCccEEEecCC--Ccc-ceeeecCCCCC-CCchHHHHHHHHhc--
Q 012597          221 SSAAPFLFSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSVD--GQT-RCVAVDGGLAM-SNPTAAAITHVLHN--  294 (460)
Q Consensus       221 ~~~~p~vF~~~~~~~~~~~~~~l~da~rASsAaP~yF~p~~i~~~d--G~~-~~~~vDGGv~~-NNP~~~Al~ea~~~--  294 (460)
                      .+++|++|++++....+..++++|+||+||||+|+||+|+++.+.|  |++ .+.|||||+.+ |||+..|+.|+...  
T Consensus       145 ~~~~~~~f~~~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~~  224 (373)
T 1oxw_A          145 KTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQ  224 (373)
T ss_dssp             TTTEEEEEESSSTTTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTT
T ss_pred             CCCCeEEEeCCCCCCCCccCchHHHHHHHHccCCcCcCcEEeeccCCCCcccceeeecCcccccCChHHHHHHHHHHHhc
Confidence            9999999999987766778899999999999999999999997544  642 24799999999 99999999998642  


Q ss_pred             -CCCCCCCC--CCCcEEEEEcCCCCcc--ccccccccccccccccchhHHHHHhhccchhHHHHHHHHHhccC-CCCCEE
Q 012597          295 -KQEFPFVR--GVEDLLVLSLGTGQLL--EASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQS-KSSNYV  368 (460)
Q Consensus       295 -k~~~p~~~--~~~~~lvlSLGTG~~~--~~~~~~~~~~~wg~~~W~~~l~~i~~~~~sd~vd~~~~~l~~~~-~~~~Y~  368 (460)
                       ...|+..+  +.++++|||||||...  +..++..+..+||.++|..+|++++++++++++|++++++|+.+ ..++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~vvSlGTG~~~~~~~~~~~~~~~~wG~~~w~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~  304 (373)
T 1oxw_A          225 KDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYL  304 (373)
T ss_dssp             TCGGGTTSTTCCGGGEEEEEECCCCBCTTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEE
T ss_pred             cCcccccccccccCceEEEEecCCCCCCcccccChhhhhhhhhHhHHHHHHHHHHHhhHHHHHHHHHHHhhccCCCCcEE
Confidence             11222111  3467999999999743  23466667889999999999999999999999999999999764 458999


Q ss_pred             EeccCCCCCCCCCCCCcCCCChHhHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHHHHHhhhhccCCC
Q 012597          369 RIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCRIA  447 (460)
Q Consensus       369 Ri~~~~~~~~~~~~~~lDdas~~n~~~L~~~a~~~l~~~~~e~~~~~~~~~~~~tn~~~l~~~a~~L~~er~~R~~~~~  447 (460)
                      ||||+... +  ....||+++++|++.|+++|++||+++ +..+.+       +||+++|++||++|++||++|..+.+
T Consensus       305 Ri~~~~l~-~--~~~~lD~~~~~~l~~L~~~~~~~l~~~-~~~~~~-------~tn~~~l~~~a~~L~~e~~~r~~~~~  372 (373)
T 1oxw_A          305 RVQENALT-G--TTTEMDDASEANMELLVQVGENLLKKP-VSEDNP-------ETYEEALKRFAKLLSDRKKLRANKAS  372 (373)
T ss_dssp             EECCCCBC-G--GGGCTTCCCHHHHHHHHHHHHHHHTSB-SSSSCC-------CBHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEeCCCCC-C--cccccccCCHHHHHHHHHHHHHHHhcc-cccccc-------hhHHHHHHHHHHHHHHHhhcccccCC
Confidence            99985433 2  456899999999999999999999984 444444       47999999999999999999987654
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 460
d1oxwa_360 c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan 6e-59
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score =  195 bits (496), Expect = 6e-59
 Identities = 95/385 (24%), Positives = 169/385 (43%), Gaps = 44/385 (11%)

Query: 70  KICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMI 129
            + +LSIDGGG +RGI+    L +LE  L+    N +AR+ADYFDV  GT  GG+ TAMI
Sbjct: 4   MVTVLSIDGGG-IRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMI 62

Query: 130 FATKGQDRPIFKADDTWRFLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGL 189
                 +RP   A +   F  + G + + P        +  +                 L
Sbjct: 63  STPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGK----------------YL 106

Query: 190 EKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFLFSRADALETESFDFRLWEVCRA 249
            + ++E   E      +   L  V+I  +D+ +  P +F++++   +   D +++++  +
Sbjct: 107 MQVLQEKLGET----RVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYS 162

Query: 250 TSSEPGLFDPVLM---RSVDGQTRCVAVDGGL-AMSNPTAAAITHVLHNKQEFPFVRGVE 305
           T++ P  F P       S   +     VDG +  +++P   +I+      Q+ P    + 
Sbjct: 163 TAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIR 222

Query: 306 DL-----LVLSLGTGQLLEA--SYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALA 358
            L     L+LSLGTG   E   +Y   +   W    W   + +++   S+ + D  ++ A
Sbjct: 223 SLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTA 282

Query: 359 FGQSKS-SNYVRIQATGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGK 417
           F    S +NY+R+Q   ++L      +D D S +N+++L+   E +LK+           
Sbjct: 283 FQALDSKNNYLRVQE--NALTGTTTEMD-DASEANMELLVQVGENLLKKPVS-------- 331

Query: 418 RIAEQSNFEKLDWFANELVLEHERR 442
               ++  E L  FA  L    + R
Sbjct: 332 EDNPETYEEALKRFAKLLSDRKKLR 356

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
d1oxwa_360 Patatin {Heartleaf nightshade (Solanum cardiophyll 100.0
d1cjya2 580 Cytosolic phospholipase A2 catalytic domain {Human 91.63
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=100.00  E-value=6.6e-58  Score=462.75  Aligned_cols=343  Identities=27%  Similarity=0.461  Sum_probs=290.2

Q ss_pred             CCceEEEEecCCCcchHHHHHHHHHHHHHHhhccCCCCCCccCCCcCEEEecchHHHHHHHHHccCCCCCcCCCHHHHHH
Q 012597           68 RGKICILSIDGGGGMRGILSGKALAYLEHALKSKSGNPNARIADYFDVAAGTGVGGVFTAMIFATKGQDRPIFKADDTWR  147 (460)
Q Consensus        68 ~~~~rILsLDGG~GiRGi~~~~iL~~Le~~l~~~~G~p~~~i~d~FDlIaGTStGgiiA~~L~~~~~~grp~~s~~e~~~  147 (460)
                      ++.+|||||||| |+||+++++||++||+++.+..+.|+.+++|+||+|+|||+|||||++|+.+...+.+.++.+++.+
T Consensus         2 ~~~v~iLsldGG-G~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~   80 (360)
T d1oxwa_           2 GEMVTVLSIDGG-GIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP   80 (360)
T ss_dssp             CSCEEEEEECCC-GGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred             CCceEEEEECCC-HHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence            578999999999 9999999999999999998888878889999999999999999999999999877888899999999


Q ss_pred             HHHHhcccccCCCCcCCchhhHHHhhhCCCCCCCCCCCchHHHHHHHHHHHhhccCcccccCCCCEEEEeeecCCCceEE
Q 012597          148 FLADQGKRFYRPLSASSSGSFLKRIFKGGSGSGSTGAASGGLEKAVKEMFTEKGRSLTLRDTLKPVLIPCYDLSSAAPFL  227 (460)
Q Consensus       148 ~y~~~~~~IF~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~Le~~L~~~l~~~fg~~~L~d~~~~v~I~a~d~~~~~p~v  227 (460)
                      .|.+....+|....          .      ..+..|+.+.|++.|++    +||+.++.+..+++.+++++..++.+++
T Consensus        81 ~~~~~~~~~f~~~~----------~------~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~  140 (360)
T d1oxwa_          81 FYFEHGPQIFNPSG----------Q------ILGPKYDGKYLMQVLQE----KLGETRVHQALTEVVISSFDIKTNKPVI  140 (360)
T ss_dssp             HHHHHHHHHTCCCC----------C------SSSCSCCCHHHHHHHHH----HHTTCBGGGCSSEEEEEEEETTTTEEEE
T ss_pred             HHHhhcchhhhccc----------c------ccCcccchHHHHHHHHH----HhCCchhhhccCcceeEecccCCCCeEE
Confidence            99988888886321          0      11346888888777765    8899999999999999999999999999


Q ss_pred             eecCCCCcCCcccCcHHHHHHHhcCCCCCCccEEEecC---CCccceeeecCCCCCC-CchHHHHHHHHhcCCCCCCC--
Q 012597          228 FSRADALETESFDFRLWEVCRATSSEPGLFDPVLMRSV---DGQTRCVAVDGGLAMS-NPTAAAITHVLHNKQEFPFV--  301 (460)
Q Consensus       228 F~~~~~~~~~~~~~~l~da~rASsAaP~yF~p~~i~~~---dG~~~~~~vDGGv~~N-NP~~~Al~ea~~~k~~~p~~--  301 (460)
                      |++++.......+.++|+|++||||+|+||||+++...   ++...+.|+|||+.+| ||+.+|+.|+.+.   ||..  
T Consensus       141 ~~~~~~~~~~~~~~~l~~a~~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l---~~~~~~  217 (360)
T d1oxwa_         141 FTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRL---AQKDPA  217 (360)
T ss_dssp             EESSSTTTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHH---TTTCGG
T ss_pred             EeccccccCCcccchHHHhhhhhhcCCCCCCCEEEecccCCCCceeEEecccchhhccCchHHHHHHHHHh---cccCcc
Confidence            99988777778899999999999999999999998653   3344467999999765 8999999998653   3321  


Q ss_pred             ------CCCCcEEEEEcCCCCccc--cccccccccccccccchhHHHHHhhccchhHHHHHHHHHhccC-CCCCEEEecc
Q 012597          302 ------RGVEDLLVLSLGTGQLLE--ASYDYDQVKNWRVKDWARPMARISGDGSAELVDQAVALAFGQS-KSSNYVRIQA  372 (460)
Q Consensus       302 ------~~~~~~lvlSLGTG~~~~--~~~~~~~~~~wg~~~W~~~l~~i~~~~~sd~vd~~~~~l~~~~-~~~~Y~Ri~~  372 (460)
                            .+...++++|+|||....  ..+......+||.+.|..++.+++..+++++++++++++|+.+ ..++|+|||+
T Consensus       218 ~~~~~~~~~~~~~~~s~gtg~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~  297 (360)
T d1oxwa_         218 FASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQE  297 (360)
T ss_dssp             GTTSTTCCGGGEEEEEECCCCBCTTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECC
T ss_pred             ccccccCCccceeeeccccccccccccccchhhhhhcchHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence                  234579999999997653  2344456789999999999999999999999999999999876 4589999998


Q ss_pred             CCCCCCCCCCCCcCCCChHhHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHHHHHhhhhccC
Q 012597          373 TGSSLGRCGHNVDVDPSPSNVKMLIGAAEEMLKQKNVESVLFGGKRIAEQSNFEKLDWFANELVLEHERRSCR  445 (460)
Q Consensus       373 ~~~~~~~~~~~~lDdas~~n~~~L~~~a~~~l~~~~~e~~~~~~~~~~~~tn~~~l~~~a~~L~~er~~R~~~  445 (460)
                      .... +  ....|||+|+++++.|++.|++++++..++.        ..+||+++|++||+.|++||++|..+
T Consensus       298 ~~~~-~--~~~~lDd~s~~~l~~l~~~g~~~~~~~~~~~--------~~~~~~~~L~~~~~~L~~er~~r~~~  359 (360)
T d1oxwa_         298 NALT-G--TTTEMDDASEANMELLVQVGENLLKKPVSED--------NPETYEEALKRFAKLLSDRKKLRANK  359 (360)
T ss_dssp             CCBC-G--GGGCTTCCCHHHHHHHHHHHHHHHTSBSSSS--------CCCBHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Cccc-c--ccccccCCCHHHHHHHHHHHHHHHhhhhhhh--------hhhHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7543 2  3568999999999999999999999875542        23589999999999999999999754
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure