BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012600
(460 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N9N2|ASCC1_HUMAN Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens
GN=ASCC1 PE=1 SV=1
Length = 400
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 326 SSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVM-DALDNRPLFIRL 384
S D G+D SIF PK HLT+ ML L +++ + +L+ + + D +PL + +
Sbjct: 190 SMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEM 249
Query: 385 KGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 444
G++ M +LYA V +RL +++ F +GL+ +++N +KLHAT
Sbjct: 250 AGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIV-KEWN-SVKLHAT 307
Query: 445 LMNIRHKK 452
+MN +K
Sbjct: 308 VMNTLFRK 315
Score = 38.9 bits (89), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 166 RFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVES 225
R I GK G T+KK E E I +P ++ I+I G + V A +I ++
Sbjct: 99 RHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRK 158
Query: 226 PSLDYSHFVSLPLAVHPELVDKLVNFQNTILG 257
++HF++ L E+ + + FQ +L
Sbjct: 159 QP--FTHFLAFFLN-EVEVQEGFLRFQEEVLA 187
>sp|Q9D8Z1|ASCC1_MOUSE Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus
GN=Ascc1 PE=2 SV=1
Length = 356
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 326 SSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVM-DALDNRPLFIRL 384
S D G+D +IF PK HLT+ ML L ++ + +L+ + + D RPL + +
Sbjct: 161 SKDRGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEM 220
Query: 385 KGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 444
G++ M +LYA V +RL +++ F GL+ +++ +KLHAT
Sbjct: 221 AGIEYMNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIV-KEWT-SVKLHAT 278
Query: 445 LMN 447
+MN
Sbjct: 279 VMN 281
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 154 HSLSVEVGASVIRF--IKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKA 211
H V A + + I GK G T+KK E E I +P E I+I G + V A
Sbjct: 56 HGFRATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSA 115
Query: 212 SEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTIL 256
+I ++ ++HF+S L E+ ++ + FQ +L
Sbjct: 116 RTRIDVLLDTFRRRQP--FTHFLSFFLN-EVEVQERFLMFQEEVL 157
>sp|Q7TN79|AKA7G_MOUSE A-kinase anchor protein 7 isoform gamma OS=Mus musculus GN=Akap7
PE=1 SV=2
Length = 314
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 341 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 400
+FH+T+L+++L N+D VN T+ L + V + L+ + L + +G+ +G
Sbjct: 91 SFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLALPFQGIGTFQGQ------- 143
Query: 401 YAPVEEIGDGDR---LLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 448
++ DGD LL + F E G++ ++ K H T M +
Sbjct: 144 -VGFVKLADGDHVSALLEIAETAKRTFREKGILAGE--SRTFKPHLTFMKL 191
>sp|Q6JP77|AKA7G_RAT A-kinase anchor protein 7 isoforms delta and gamma OS=Rattus
norvegicus GN=Akap7 PE=1 SV=1
Length = 353
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 341 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 400
+FH+T+L+++L N+D VN T+ L + V + L+ + L + G+ +G +
Sbjct: 130 SFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLTLPFHGIGTFQGQVGFVK-- 187
Query: 401 YAPVEEIGDGDR---LLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 448
+ DGD LL + F E G++ ++ K H T M +
Sbjct: 188 ------LADGDHVSALLEIAETAKRTFQEKGILAGE--SRTFKPHLTFMKL 230
>sp|A6X982|YOGD_SCHPO Uncharacterized protein C15D4.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15D4.13c PE=4 SV=2
Length = 204
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 336 FIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKD 395
F P+ HLT+ M+ + N + V + L + ++ + + + I LKG S
Sbjct: 38 FRGPRVSHLTIGMIPVKNDEDVLKCMDFLYNKEDEIRKSYGEKKITIDLKGTSFFGKSPQ 97
Query: 396 KARILYA-PVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRQ 454
+A++LYA PV++ + +++ F E L F +D + L LH TL+N R+ K Q
Sbjct: 98 EAKVLYATPVDKHNEWLKVI---------FTEHNL-FTKD-ARPLTLHCTLLNSRYIKYQ 146
Query: 455 KR 456
R
Sbjct: 147 GR 148
>sp|Q473U7|PNP_CUPPJ Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pnp PE=3
SV=1
Length = 728
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I STD +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRRIEGITAEA 621
>sp|Q0KCT4|PNP_CUPNH Polyribonucleotide nucleotidyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pnp
PE=3 SV=1
Length = 723
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I STD +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRRIEGITAEA 621
>sp|Q1LPW7|PNP_RALME Polyribonucleotide nucleotidyltransferase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=pnp PE=3 SV=1
Length = 725
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I STD +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRRIEGITAEA 621
>sp|Q31GI3|UVRC_THICR UvrABC system protein C OS=Thiomicrospira crunogena (strain XCL-2)
GN=uvrC PE=3 SV=1
Length = 613
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 21/109 (19%)
Query: 354 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIG----D 409
K ++N A +V K++ LDN PL KG G K ILY P E G
Sbjct: 474 KGQLNKAIDVFKTLE------LDNLPLVSVAKG----EGRKAGLEILYTPFNEEGIDLEA 523
Query: 410 GDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI-------RHK 451
D LH I D + + HR +K + H+ L +I RHK
Sbjct: 524 DDIALHLLNYIRDEAHRFAITSHRSRRQKAQTHSRLEDIPGVGAKTRHK 572
>sp|B3R3W3|PNP_CUPTR Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=pnp PE=3 SV=1
Length = 723
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I ST+ +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTEGMAEAKRRIEGITAEA 621
>sp|Q9P0M2|AKA7G_HUMAN A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7
PE=1 SV=2
Length = 348
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 341 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 400
+FH+T+L+++L N+D VN + L + + + L + L + +G+ ++
Sbjct: 125 SFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGN-----QVG 179
Query: 401 YAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRQKRN 457
+ + E + LL + F E G++ ++ K H T M + ++N
Sbjct: 180 FVKLAEGDHVNSLLEIAETANRTFQEKGILVGE--SRSFKPHLTFMKLSKSPWLRKN 234
>sp|P41993|YKC2_CAEEL Uncharacterized protein B0280.2 OS=Caenorhabditis elegans
GN=B0280.2 PE=4 SV=3
Length = 627
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 27/222 (12%)
Query: 101 HCSTSSNVSDAQLGVEVAEA----VNEGTDLTLSSSVSLDDIKDETLEGEPVP-SAERHS 155
HCS +++A L V A + G L L++S L P P AE S
Sbjct: 390 HCSEKP-IAEAPLRPPVRPAPIVPTSAGLCLVLAASFPTSSTPSRFLNPFPAPLPAE--S 446
Query: 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIIL---PSSKKEDSIIIEGNSTDSVAKAS 212
+ + FIK Q+ F+ + ++ I PSS ++ II+G S++ +S
Sbjct: 447 FFGNSKSKIAYFIKPTNEQPQELFQTPVQIEKIFSSTPSSPVSNAAIIDGMKNISLSDSS 506
Query: 213 EKIQAIIAEAVESPSLDYSHFVS----LPLA---VHP--ELVDKLVNFQNTILGITDVCL 263
+ IA V +P S +S LP + ++P E+VD+ + T + +T+ C
Sbjct: 507 TSVAQDIAMKVPTPLPRTSKIISASSPLPPSQDEINPLIEMVDQSSSKSETQIPVTE-C- 564
Query: 264 DENVGSKSNEDASDSEEKEQQVDQEHKVAVELNIGDNSERVK 305
S+S+ + S + Q D + + L+I NSE+ K
Sbjct: 565 -----SQSHLNGKGSAAQIQSADFDKVLNQLLSIKVNSEKSK 601
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 19/83 (22%)
Query: 163 SVIRFIKGKEGSTQKKFEKEMGVKII-------------------LPSSKKEDSIIIEGN 203
+ + + G G+T K EKE KI+ LP + ++ N
Sbjct: 151 NFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTAN 210
Query: 204 STDSVAKASEKIQAIIAEAVESP 226
+ ++V KA E+I+ I+ + +E+P
Sbjct: 211 TMENVKKAVEQIRNILKQGIETP 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,424,561
Number of Sequences: 539616
Number of extensions: 6860468
Number of successful extensions: 19351
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 19306
Number of HSP's gapped (non-prelim): 177
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)