Query 012600
Match_columns 460
No_of_seqs 257 out of 765
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:36:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfk_A AKAP18 delta; APO, hydr 99.9 3.1E-23 1.1E-27 193.5 10.6 146 285-451 1-146 (205)
2 1vgj_A Hypothetical protein PH 99.8 7.5E-21 2.6E-25 174.0 10.6 134 288-452 2-135 (184)
3 1iuh_A 2'-5' RNA ligase; riken 99.8 6.1E-19 2.1E-23 164.8 13.1 131 289-451 3-139 (198)
4 2d4g_A Hypothetical protein BS 99.6 2E-15 6.8E-20 136.6 5.6 120 289-449 3-122 (171)
5 2cte_A Vigilin; K homology typ 99.5 4E-14 1.4E-18 118.7 7.6 73 151-224 14-87 (94)
6 1jh6_A Cyclic phosphodiesteras 99.5 4.9E-14 1.7E-18 131.0 8.8 117 289-449 10-126 (189)
7 2dgr_A Ring finger and KH doma 99.4 1.7E-13 5.8E-18 112.7 8.1 70 151-221 7-76 (83)
8 2ctl_A Vigilin; K homology typ 99.4 4.9E-13 1.7E-17 112.8 9.0 72 152-224 15-90 (97)
9 1vig_A Vigilin; RNA-binding pr 99.4 3.5E-13 1.2E-17 107.3 6.6 66 153-219 4-70 (71)
10 2ctj_A Vigilin; K homology typ 99.4 5.4E-13 1.9E-17 112.4 7.4 72 151-223 14-87 (95)
11 2ctf_A Vigilin; K homology typ 99.4 1.9E-12 6.5E-17 110.3 9.9 69 153-224 26-95 (102)
12 2ctk_A Vigilin; K homology typ 99.4 1.8E-12 6.1E-17 110.7 9.7 70 153-223 16-86 (104)
13 2ctm_A Vigilin; K homology typ 99.4 1.3E-12 4.3E-17 110.0 8.6 73 151-224 14-88 (95)
14 1zzk_A Heterogeneous nuclear r 99.3 1.2E-11 4.1E-16 100.8 8.2 71 151-222 4-77 (82)
15 1x4n_A FAR upstream element bi 99.2 3E-11 1E-15 100.7 7.2 72 152-224 13-87 (92)
16 2axy_A Poly(RC)-binding protei 99.2 2.4E-11 8.1E-16 97.1 6.0 70 151-221 2-72 (73)
17 2jzx_A Poly(RC)-binding protei 99.2 3E-11 1E-15 108.9 7.5 106 152-258 3-117 (160)
18 1wvn_A Poly(RC)-binding protei 99.2 2.5E-11 8.4E-16 98.9 6.0 72 150-222 2-76 (82)
19 1dtj_A RNA-binding neurooncolo 99.2 2.2E-11 7.6E-16 97.4 5.6 67 153-220 2-74 (76)
20 2opv_A KHSRP protein; KH domai 99.2 3.8E-11 1.3E-15 98.5 7.1 67 153-220 13-84 (85)
21 1j5k_A Heterogeneous nuclear r 99.2 3E-11 1E-15 100.0 6.1 72 150-222 10-84 (89)
22 1x4m_A FAR upstream element bi 99.1 3.5E-11 1.2E-15 100.6 6.0 70 151-221 12-86 (94)
23 1ec6_A RNA-binding protein NOV 99.1 4E-11 1.4E-15 98.7 6.2 70 153-223 2-77 (87)
24 3n89_A Defective in GERM LINE 99.1 3.2E-11 1.1E-15 123.8 7.0 66 151-217 27-102 (376)
25 2p2r_A Poly(RC)-binding protei 99.1 3.5E-11 1.2E-15 96.5 5.7 69 152-221 3-74 (76)
26 2hh3_A KH-type splicing regula 99.1 1E-10 3.6E-15 100.2 7.6 72 153-225 10-84 (106)
27 3krm_A Insulin-like growth fac 99.1 1.9E-10 6.6E-15 103.9 9.4 105 153-258 2-113 (163)
28 1we8_A Tudor and KH domain con 99.1 1E-10 3.5E-15 99.5 6.7 69 152-221 13-86 (104)
29 1j4w_A FUSE binding protein; s 99.1 1.8E-10 6.1E-15 105.5 8.0 105 153-258 2-132 (174)
30 2anr_A Neuro-oncological ventr 99.1 1.6E-10 5.6E-15 106.0 6.6 107 151-258 3-132 (178)
31 2jvz_A KH type-splicing, FAR u 99.0 2.2E-10 7.6E-15 103.2 6.6 104 154-258 2-119 (164)
32 2hh2_A KH-type splicing regula 99.0 1.7E-10 6E-15 98.7 5.4 66 155-221 8-79 (107)
33 1k1g_A SF1-BO isoform; splicin 98.9 1.2E-09 4.2E-14 97.0 6.7 71 151-221 4-99 (131)
34 3krm_A Insulin-like growth fac 98.9 2.3E-09 8E-14 96.8 8.4 72 152-224 83-159 (163)
35 2jvz_A KH type-splicing, FAR u 98.9 1.5E-09 5.2E-14 97.7 5.4 68 154-222 91-161 (164)
36 2jzx_A Poly(RC)-binding protei 98.8 4.3E-09 1.5E-13 94.7 6.4 69 152-221 87-159 (160)
37 3n89_A Defective in GERM LINE 98.8 4.2E-09 1.4E-13 108.1 6.3 70 148-218 180-258 (376)
38 2yqr_A KIAA0907 protein; struc 98.8 1.3E-08 4.5E-13 89.0 7.4 70 154-223 12-101 (119)
39 2anr_A Neuro-oncological ventr 98.7 7.1E-09 2.4E-13 95.0 5.5 69 152-221 102-175 (178)
40 2cpq_A FragIle X mental retard 98.7 9.7E-09 3.3E-13 85.9 5.6 67 151-219 12-79 (91)
41 1j4w_A FUSE binding protein; s 98.7 1E-08 3.6E-13 93.7 5.2 65 153-218 103-173 (174)
42 2qnd_A FMR1 protein; KH domain 98.6 2.1E-08 7.1E-13 90.0 5.1 65 156-221 69-142 (144)
43 2bl5_A MGC83862 protein, quaki 98.4 3.3E-07 1.1E-11 82.2 5.7 65 155-219 3-99 (140)
44 2e3u_A PH-DIM2P, hypothetical 98.2 2E-06 6.8E-11 82.5 6.7 63 155-219 35-101 (219)
45 2qnd_A FMR1 protein; KH domain 98.1 2.2E-06 7.5E-11 76.8 4.0 94 152-258 2-95 (144)
46 3u1k_A Polyribonucleotide nucl 98.0 3E-06 1E-10 92.4 4.2 64 153-219 566-629 (630)
47 2e3u_A PH-DIM2P, hypothetical 97.9 1.1E-05 3.7E-10 77.3 6.4 53 164-221 139-191 (219)
48 1tua_A Hypothetical protein AP 97.5 7.8E-05 2.7E-09 70.0 4.4 54 163-221 107-160 (191)
49 4aid_A Polyribonucleotide nucl 97.2 6E-05 2E-09 83.4 0.9 65 154-221 570-634 (726)
50 1tua_A Hypothetical protein AP 97.0 0.00094 3.2E-08 62.7 6.5 64 154-220 4-72 (191)
51 2fsq_A ATU0111 protein; alpha- 97.0 0.00026 8.8E-09 68.8 2.3 132 288-449 43-187 (243)
52 3v69_A Protein filia; RNA-bind 96.6 0.0039 1.3E-07 55.5 7.0 70 154-224 56-127 (140)
53 3cdi_A Polynucleotide phosphor 94.4 0.0073 2.5E-07 66.9 0.0 64 155-221 561-624 (723)
54 1e3p_A Guanosine pentaphosphat 93.6 0.0037 1.3E-07 69.5 -4.2 62 155-219 599-660 (757)
55 2cxc_A NUSA; transcription ter 68.8 1 3.6E-05 40.2 0.1 38 152-189 101-138 (144)
56 2cxc_A NUSA; transcription ter 65.8 3.5 0.00012 36.7 2.9 40 151-190 33-72 (144)
57 2ctf_A Vigilin; K homology typ 62.3 0.077 2.6E-06 44.6 -8.2 51 200-258 5-55 (102)
58 2z0s_A Probable exosome comple 60.2 19 0.00064 34.1 7.1 63 156-221 150-212 (235)
59 2asb_A Transcription elongatio 53.9 7.8 0.00027 37.6 3.2 40 153-192 183-222 (251)
60 2ba0_A Archeal exosome RNA bin 49.1 21 0.00072 33.7 5.4 61 156-220 138-198 (229)
61 1k0r_A NUSA; two component arr 48.2 10 0.00035 38.7 3.2 40 153-192 306-345 (366)
62 1hh2_P NUSA, N utilization sub 48.0 9.8 0.00033 38.5 3.0 40 151-190 300-339 (344)
63 3i0u_A Phosphothreonine lyase 47.3 1E+02 0.0035 28.9 9.4 79 340-432 80-172 (218)
64 2ja9_A Exosome complex exonucl 44.9 19 0.00066 32.8 4.2 58 157-217 94-152 (175)
65 3bo6_A Hydrophilic protein, VI 40.7 91 0.0031 29.3 8.0 80 340-433 82-175 (220)
66 2pt7_G HP1451, hypothetical pr 38.8 15 0.00052 32.8 2.5 102 155-296 34-137 (152)
67 1wf3_A GTP-binding protein; GT 32.4 17 0.00058 35.2 1.8 27 154-180 230-257 (301)
68 1jh6_A Cyclic phosphodiesteras 31.6 70 0.0024 28.5 5.8 43 393-446 4-46 (189)
69 1wh9_A 40S ribosomal protein S 31.2 19 0.00066 29.4 1.7 29 156-184 37-65 (92)
70 3i24_A HIT family hydrolase; s 30.7 74 0.0025 27.9 5.6 81 350-430 48-139 (149)
71 2o5a_A BH1328 protein; BHR21, 30.6 1.2E+02 0.0043 26.0 6.9 62 355-431 5-66 (125)
72 1tac_A TAT protein; transcript 28.8 24 0.00084 28.7 1.8 26 36-66 28-53 (86)
73 2nn6_G Exosome complex exonucl 28.0 21 0.00071 35.2 1.6 58 156-216 212-269 (289)
74 2id1_A Hypothetical protein; a 26.9 1.6E+02 0.0056 25.5 7.0 60 357-431 7-66 (130)
75 1j26_A Immature colon carcinom 26.3 31 0.0011 29.3 2.2 29 196-224 76-108 (112)
76 3udc_A Small-conductance mecha 25.1 1.4E+02 0.0046 28.7 6.8 74 354-431 191-267 (285)
77 2vv5_A MSCS, small-conductance 25.1 2.4E+02 0.0081 27.0 8.6 83 341-431 185-268 (286)
78 3iev_A GTP-binding protein ERA 23.2 40 0.0014 32.5 2.6 27 153-179 239-266 (308)
79 2je6_I RRP4, exosome complex R 22.8 13 0.00044 35.8 -1.0 57 156-215 157-213 (251)
80 2ctj_A Vigilin; K homology typ 22.0 4.4 0.00015 33.3 -3.9 29 230-258 17-45 (95)
No 1
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.89 E-value=3.1e-23 Score=193.54 Aligned_cols=146 Identities=21% Similarity=0.360 Sum_probs=122.9
Q ss_pred ccCCceEEEEccCCcchHHHHHhhccccccccccccCCCCCCCCCCCCcCCccCCCcceEEeeccccCChhHHHHHHHHH
Q 012600 285 VDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVL 364 (460)
Q Consensus 285 ~rpn~FVAv~i~~~~i~~~v~~vq~~i~~~~~~~~~~k~~~~~~~Gld~~~fv~p~~LHLTL~~L~L~~eeev~~A~~~L 364 (460)
+++++||||+++++++.+.+..+|+.+. . .+.|++ ..|++|+++||||.|||+.++++++++.++|
T Consensus 1 ~~~r~Fial~~~~~~~~~~l~~~~~~l~--~-----------~~~~~~-~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l 66 (205)
T 2vfk_A 1 YQPNYFLSIPITNKKITAGIKVLQNSIL--R-----------QDNRLT-KAMVGDGSFHITLLVMQLLNEDEVNIGTDAL 66 (205)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHH--H-----------HCGGGG-GGBCCTTCCEEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHHHH--h-----------cCcchH-HHhCCcCccEEEEEEEEcCCHHHHHHHHHHH
Confidence 4689999999998789999999999872 0 011222 2699999999999999999999999999999
Q ss_pred HHhHHhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCcccCCCCCcceeEE
Q 012600 365 KSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 444 (460)
Q Consensus 365 ~~i~~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~~~de~r~fkpHlT 444 (460)
..+...+.+++...||.|+|.|+++|++ +|||+++.+.++.+.|.+|++.|.+.|..+|+... +.++|+||+|
T Consensus 67 ~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~--~~~~f~PHiT 139 (205)
T 2vfk_A 67 LELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAG--ESRTFKPHLT 139 (205)
T ss_dssp HHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBC--CSSCCCCCEE
T ss_pred HHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCcC--CCCCcceEEE
Confidence 9987666667777999999999999998 89999997521237899999999999999999542 3689999999
Q ss_pred eeeeccc
Q 012600 445 LMNIRHK 451 (460)
Q Consensus 445 L~n~k~~ 451 (460)
|+|.++.
T Consensus 140 lar~~~~ 146 (205)
T 2vfk_A 140 FMKLSKA 146 (205)
T ss_dssp EEEGGGC
T ss_pred EEecccc
Confidence 9999864
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.83 E-value=7.5e-21 Score=174.02 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=114.5
Q ss_pred CceEEEEccCCcchHHHHHhhccccccccccccCCCCCCCCCCCCcCCccCCCcceEEeeccccCChhHHHHHHHHHHHh
Q 012600 288 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSI 367 (460)
Q Consensus 288 n~FVAv~i~~~~i~~~v~~vq~~i~~~~~~~~~~k~~~~~~~Gld~~~fv~p~~LHLTL~~L~L~~eeev~~A~~~L~~i 367 (460)
.+|||+.++. ++.+.+..+|+.+. ..+. ...|++|++|||||.|||..++++++++.++|+.+
T Consensus 2 R~Fial~~p~-~~~~~l~~~~~~l~---------------~~~~-~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~ 64 (184)
T 1vgj_A 2 RAFIAIDVNE-SVRDSLVRAQDYIG---------------SKEA-KIKFVERENLHITLKFLGEITEEQAEEIKNILKKI 64 (184)
T ss_dssp EEEEEEECCH-HHHHHHHHHHHHHC---------------SSSE-EEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCH-HHHHHHHHHHHHHh---------------hcCC-CcEecCccccEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 3799999986 78999999999872 1111 12699999999999999999999999999999887
Q ss_pred HHhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCcccCCCCCcceeEEeee
Q 012600 368 SSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMN 447 (460)
Q Consensus 368 ~~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~~~de~r~fkpHlTL~n 447 (460)
.. ..+||.++|.|+|+|++ +.+|+|||+++.+ .+.|.+|++.|.+.+...|+..+ . +|+||+||+|
T Consensus 65 ~~------~~~pf~l~l~g~g~F~~-~~~p~vl~~~v~~---~~~L~~L~~~l~~~l~~~g~~~~---~-~f~PHiTLar 130 (184)
T 1vgj_A 65 AE------KYKKHEVKVKGIGVFPN-PNYIRVIWAGIEN---DEIIREMAREIEDELAKLGFKKE---G-NFVAHITLGR 130 (184)
T ss_dssp HT------TSBCEEEEEEEEEEEEC-SSSEEEEEEEEET---CHHHHHHHHHHHHHHHTTTCCCC---C-CCCCEEEEEE
T ss_pred Hc------cCCCeEEEEeeEeeCCC-CCCCcEEEEEecC---CHHHHHHHHHHHHHHHHcCCCCC---C-CccceEEEEe
Confidence 31 35899999999999998 8899999999984 37899999999999999999873 4 9999999999
Q ss_pred ecccc
Q 012600 448 IRHKK 452 (460)
Q Consensus 448 ~k~~k 452 (460)
.+...
T Consensus 131 ~~~~~ 135 (184)
T 1vgj_A 131 VKFVK 135 (184)
T ss_dssp EEEES
T ss_pred ecccC
Confidence 87543
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.79 E-value=6.1e-19 Score=164.82 Aligned_cols=131 Identities=19% Similarity=0.229 Sum_probs=112.6
Q ss_pred ceEEEEccCCcchHHHHHhhccccccccccccCCCCCCCCCCCCcCCccCCCcceEEeeccccCChhHHHHHHHHHHHhH
Q 012600 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (460)
Q Consensus 289 ~FVAv~i~~~~i~~~v~~vq~~i~~~~~~~~~~k~~~~~~~Gld~~~fv~p~~LHLTL~~L~L~~eeev~~A~~~L~~i~ 368 (460)
+||||.++. ++.+.|..+|+.+. . +.. ..|++++++||||.|+|..++++++++.++|..+.
T Consensus 3 lFial~~p~-~~~~~l~~~~~~l~---------------~-~~~-~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~ 64 (198)
T 1iuh_A 3 LFYAVFLPE-EVRAALVEAQTKVR---------------P-FRG-WKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA 64 (198)
T ss_dssp EEEEEECCH-HHHHHHHHHHGGGT---------------T-CTT-EEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhh---------------h-hcC-CcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHh
Confidence 799999986 78999999998872 1 111 26999999999999999999999999999998873
Q ss_pred HhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHC-C-----CCcccCCCCCccee
Q 012600 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEA-G-----LVFHRDYNKKLKLH 442 (460)
Q Consensus 369 ~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~-G-----l~~~~de~r~fkpH 442 (460)
. ...||.|+|.|+|+|++ ..+++|||+++ + .+.|.+|++.|.+.+... | +.. +.++|+||
T Consensus 65 ~------~~~pf~l~l~g~g~F~~-~~~p~vl~l~v-~---~~~L~~L~~~l~~~l~~~~g~~~~~~~~---~~~~f~PH 130 (198)
T 1iuh_A 65 R------LEAPFRARLRGTGYFPN-EGTPRVWFAKA-E---AEGFLRLAEGLRAGVEELLGEEAVRIPG---WDKPFKPH 130 (198)
T ss_dssp H------HSCCEEEEEEEEEEESS-SSSCSEEEEEE-E---CHHHHHHHHHHHHHHHHHHGGGGGGSTT---TTSCCCCE
T ss_pred c------cCCCeEEEEcceEECCC-CCCCCEEEEEC-C---CHHHHHHHHHHHHHHHHhcCCCcccccC---CCCCCCCc
Confidence 2 25899999999999998 78899999999 4 578999999999999999 9 876 35799999
Q ss_pred EEeeeeccc
Q 012600 443 ATLMNIRHK 451 (460)
Q Consensus 443 lTL~n~k~~ 451 (460)
+||+|.+..
T Consensus 131 iTLar~~~~ 139 (198)
T 1iuh_A 131 ITLARRKAP 139 (198)
T ss_dssp EEEEEESSC
T ss_pred EEeEeccCc
Confidence 999998753
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=2e-15 Score=136.57 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=97.3
Q ss_pred ceEEEEccCCcchHHHHHhhccccccccccccCCCCCCCCCCCCcCCccCCCcceEEeeccccCChhHHHHHHHHHHHhH
Q 012600 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (460)
Q Consensus 289 ~FVAv~i~~~~i~~~v~~vq~~i~~~~~~~~~~k~~~~~~~Gld~~~fv~p~~LHLTL~~L~L~~eeev~~A~~~L~~i~ 368 (460)
+||||.++. ++.+.+..+|+.+. .+ -.|++| ||||.|+|..++++++++.++|+.+.
T Consensus 3 ~Fiai~~~~-~~~~~l~~~~~~~~----------------~~---~~~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~ 59 (171)
T 2d4g_A 3 YGIVLFPSK-KLQDLANSYRKRYD----------------PS---YSLIPP---HLTLRASFECAEEKADQLVSHLRNIA 59 (171)
T ss_dssp EEEEBCCCH-HHHHHHHHHHHHHC----------------GG---GGTSCS---CBCCSSCEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhC----------------cc---cCCCCC---eEEeecCCcCChHHHHHHHHHHHHHH
Confidence 799999986 78899999998761 01 148888 99999999999999999988888773
Q ss_pred HhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCcccCCCCCcceeEEeeee
Q 012600 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 448 (460)
Q Consensus 369 ~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~~~de~r~fkpHlTL~n~ 448 (460)
. ...||.|+|.|+|+|+. . ..|||+++.+ .+.|.+|++.|.+.|... . +.++|.||+||+|.
T Consensus 60 ~------~~~pf~l~l~~~g~F~~--~-~~vl~l~~~~---~~~L~~L~~~l~~~~~~~---~---~~~~f~PHiTLar~ 121 (171)
T 2d4g_A 60 K------ESHPLVLKMTKYSSFAP--V-NNVIYIKAEP---TEELKTLNEKLYTGVLAG---E---QEYNFVPHVTVGQN 121 (171)
T ss_dssp H------TCCCEEEEEEEEEECTT--T-CCCEEEEECC---CHHHHHHHHHTTSGGGCS---C---CCSCCCCEEEEECS
T ss_pred c------cCCCEEEEECCcEEeCC--C-CcEEEEEccC---ChHHHHHHHHHHhccccc---c---cCCCCCCeEEeecC
Confidence 2 35899999999999984 1 1499999974 588999999998876541 2 35789999999986
Q ss_pred c
Q 012600 449 R 449 (460)
Q Consensus 449 k 449 (460)
.
T Consensus 122 ~ 122 (171)
T 2d4g_A 122 L 122 (171)
T ss_dssp C
T ss_pred C
Confidence 5
No 5
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=4e-14 Score=118.67 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=67.6
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
.++++..+.||+.+|++|||+||.++|+|+++|||+|+||..++ ++.|+|+|. .++|++|+.+|+.++.+..+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 46789999999999999999999999999999999999998765 678999998 89999999999999998655
No 6
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.49 E-value=4.9e-14 Score=131.01 Aligned_cols=117 Identities=10% Similarity=0.007 Sum_probs=92.8
Q ss_pred ceEEEEccCCcchHHHHHhhccccccccccccCCCCCCCCCCCCcCCccCCCcceEEeeccccCChhHHHHHHHHHHHhH
Q 012600 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (460)
Q Consensus 289 ~FVAv~i~~~~i~~~v~~vq~~i~~~~~~~~~~k~~~~~~~Gld~~~fv~p~~LHLTL~~L~L~~eeev~~A~~~L~~i~ 368 (460)
.|++++ .+++.+.+..+++.+. .. .+.++.++|||| ||..+.+ ++.+.+.|+++.
T Consensus 10 ~f~~~p--p~~~~~~l~~~~~~l~--------------~~------~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~a 64 (189)
T 1jh6_A 10 SVWALP--DEESEPRFKKLMEALR--------------SE------FTGPRFVPHVTV--AVSAYLT-ADEAKKMFESAC 64 (189)
T ss_dssp EEEEEE--CTTTHHHHHHHHHHHH--------------HH------HTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEEC--CHHHHHHHHHHHHHHH--------------HH------cCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHHH
Confidence 577776 5689999999998872 01 234778999999 7888766 777888887763
Q ss_pred HhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCcccCCCCCcceeEEeeee
Q 012600 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 448 (460)
Q Consensus 369 ~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~~~de~r~fkpHlTL~n~ 448 (460)
. ..+||.|+|.|+|+|. ..+||||++|++ .+.|..|++.+++. .|+.. .++|.||+||+|.
T Consensus 65 ~------~~~pf~l~l~g~g~~~---~~~rvlw~~v~~---~~~L~~L~~~v~~~---~g~~~----~~~f~PHlTLar~ 125 (189)
T 1jh6_A 65 D------GLKAYTATVDRVSTGT---FFFQCVFLLLQT---TPEVMEAGEHCKNH---FNCST----TTPYMPHLSLLYA 125 (189)
T ss_dssp H------TCBCEEEEEEEEEEEE---ETTEEEEEEECC---CHHHHHHHHHHHHH---TTCCC----CSCCCCEEEEECC
T ss_pred h------hCCCeEEEEcceeccC---ccceEEEEeecC---CHHHHHHHHHHHHH---hCCCC----CCCCCCeEEEEEe
Confidence 2 2589999999999953 367999999974 48899999999886 68875 3699999999987
Q ss_pred c
Q 012600 449 R 449 (460)
Q Consensus 449 k 449 (460)
+
T Consensus 126 ~ 126 (189)
T 1jh6_A 126 E 126 (189)
T ss_dssp C
T ss_pred c
Confidence 6
No 7
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=112.74 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=63.8
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
..+.+..+.||.+++++||||+|+|+|+|+++|||+|+||+.++...|+|+|. .++|++|++.|+.++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999998777778999997 59999999999997654
No 8
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=4.9e-13 Score=112.81 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=65.7
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~----~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
..++..+.||+.+|+.|||+||+++++|+++|||+|+||..++ .+.|+|+|+ ++++.+|+++|+.|+.+...
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998774 357999997 89999999999999988654
No 9
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.39 E-value=3.5e-13 Score=107.34 Aligned_cols=66 Identities=18% Similarity=0.405 Sum_probs=59.9
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHH
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAII 219 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-~~~I~ItG~s~e~V~~A~~rI~~iv 219 (460)
-.+..+.||+.+|+.|||+||.++++|+++|||+|+||..++ ++.|+|+|+ .+++++|+++|..++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999998875 568999998 699999999998763
No 10
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=5.4e-13 Score=112.36 Aligned_cols=72 Identities=25% Similarity=0.402 Sum_probs=65.0
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHh-CcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEM-GVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT-~trI~iP~~~~-~~~I~ItG~s~e~V~~A~~rI~~iv~e~~ 223 (460)
....+.++.||+.+|+.|||+||.++|+|+++| ||+|+||..++ ++.|+|+|+. ++|++|+++|+.|+.+..
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-HHHHHHHHHHHHHHHHHS
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhhhh
Confidence 345577899999999999999999999999999 99999999876 6789999984 599999999999999854
No 11
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=1.9e-12 Score=110.31 Aligned_cols=69 Identities=30% Similarity=0.446 Sum_probs=63.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHH-hCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKE-MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~e-T~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
..+.++.||+.||++|||++|+++|+|+++ ++++|+||+ +++.|+|+|+ ++.|++|+.+|+.++++...
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999999997 699999998 4578999998 89999999999999998766
No 12
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=1.8e-12 Score=110.74 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=64.3
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-~~~I~ItG~s~e~V~~A~~rI~~iv~e~~ 223 (460)
....++.||+.+|+.|||+||.++|+|+++|||+|+||..++ ++.|+|+|. .++|++|++.|+.++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhHH
Confidence 478899999999999999999999999999999999998875 568999998 5999999999999987744
No 13
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=1.3e-12 Score=109.96 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=66.3
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~--~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
..+++..+.||+.+|+.|||+||.++|+|+++|||+|+||..++ .+.|+|+|. .++|++|++.|+.|+.+..+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999998874 446999998 69999999999999998665
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.26 E-value=1.2e-11 Score=100.83 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e~ 222 (460)
+.+++..+.||..+++.||||+|+++++|+++|||+|+|+.... .+.|+|+|. .++|++|+..|+.++.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999999999987532 357999995 899999999999999874
No 15
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.18 E-value=3e-11 Score=100.65 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=64.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
......+.||..+++.||||+|+++++|+++|||+|+|+.... ...|+|+|. .++|++|+..|+.++.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 4577899999999999999999999999999999999987643 357999997 89999999999999998654
No 16
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.18 E-value=2.4e-11 Score=97.13 Aligned_cols=70 Identities=24% Similarity=0.327 Sum_probs=62.5
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
+.+....+.||...++.||||||.++++|+++|||+|+|+..+. ...|.|+|. .+++.+|...|..++.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999999999999998754 456999997 89999999999988764
No 17
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=3e-11 Score=108.93 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=90.3
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhhC-----
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVES----- 225 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~~----- 225 (460)
......+.||..+++.||||+|+++|+|+++|||+|+|+..+. .+.|+|+|+ .++|.+|+..|..++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~~ 81 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTNS 81 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCCC
Confidence 4577899999999999999999999999999999999998754 457999997 799999999999887664221
Q ss_pred ---CCCCcceEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 226 ---PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 226 ---~k~~~THFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
+..+.+..+.||-.++..|.|+.+..++.|.+.
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~ 117 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 117 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHH
Confidence 122457788899999999999999999999875
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=2.5e-11 Score=98.85 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=62.4
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 012600 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (460)
Q Consensus 150 ~~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e~ 222 (460)
-+.+.+..+.||..+++.||||+|+++++|+++|||+|+|+.... ...|+|+|. .++|.+|+..|..++.+.
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999999987422 457999997 599999999999998763
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.17 E-value=2.2e-11 Score=97.37 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=59.3
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHH
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIA 220 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~------~~~I~ItG~s~e~V~~A~~rI~~iv~ 220 (460)
+.+..+.||..+++.||||+|+++++|+++|||+|+|++.++ .+.|+|+|. .+++.+|+..|..++.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999997532 357999997 7999999999988764
No 20
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.17 E-value=3.8e-11 Score=98.45 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=59.4
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHH
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIA 220 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-----~~~I~ItG~s~e~V~~A~~rI~~iv~ 220 (460)
.....+.||..+++.||||+|+|+|+|+++|||+|+|+..+. ...|+|+| +.+.+++|+..|+.++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999998643 22499999 68999999999998874
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.16 E-value=3e-11 Score=99.97 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=64.1
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 012600 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (460)
Q Consensus 150 ~~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e~ 222 (460)
...+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. .++|++|+..|+.++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 345788899999999999999999999999999999999987532 467999997 899999999999999874
No 22
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.15 E-value=3.5e-11 Score=100.63 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=62.9
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-----~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
..+....+.||..+++.||||+|+++|+|+++|||+|+|+..+. ...|+|+| +.+.|++|+..|+.++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 36788999999999999999999999999999999999987643 34699999 579999999999999876
No 23
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=4e-11 Score=98.66 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=61.9
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~------~~~I~ItG~s~e~V~~A~~rI~~iv~e~~ 223 (460)
+.+..+.||..+++.||||||+++++|+++|||+|+|+..++ ...|+|+|. .++|..|+..|..++.+..
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhccc
Confidence 346789999999999999999999999999999999997532 357999997 8999999999999987743
No 24
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.15 E-value=3.2e-11 Score=123.80 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=60.7
Q ss_pred CCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCC-------C-CCcEEEEccChhHHHHHHHHHHH
Q 012600 151 AERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSK-------K-EDSIIIEGNSTDSVAKASEKIQA 217 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G--~t~k~LE~eT~trI~iP~~~-------~-~~~I~ItG~s~e~V~~A~~rI~~ 217 (460)
.++++.+++||+.||++|||||| +++++|.+||||+|+||..+ + ++.|+|+|. .++|++|+.+|+.
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~ 102 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRR 102 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHh
Confidence 46899999999999999999999 99999999999999999876 2 467999997 8999999999975
No 25
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=96.52 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=61.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
...+..+.||..+++.||||||.++++|+++|||+|+|+.... .+.|.|+|. .++|.+|+..|+.++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 4677899999999999999999999999999999999987432 457999997 89999999999988754
No 26
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=1e-10 Score=100.21 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=61.5
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhhC
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVES 225 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~~ 225 (460)
..+..+.||+++++.||||+|+|+|+|+++|+|+|+|+.... ...|+|+|. .++|++|+..|+.++.+....
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhccccC
Confidence 457899999999999999999999999999999999986543 236999997 899999999999999885543
No 27
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=103.93 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=87.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh-CC-
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE-SP- 226 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~----~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~-~~- 226 (460)
+-+..+.||..+++.||||+|+++++|+++|||+|+|+..+. ...|+|+|. .+++.+|+..|..++.+... .|
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~-~e~v~~A~~~I~~~~~e~~~~~~~ 80 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP-PEAQFKAQGRIYGKLKEENFFGPK 80 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTSSCSS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccccc
Confidence 346789999999999999999999999999999999988642 345999995 89999999999999877421 11
Q ss_pred -CCCcceEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 227 -SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 227 -k~~~THFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
....+..+.||-.++..|.|+.+..++.|.+.
T Consensus 81 ~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~ 113 (163)
T 3krm_A 81 EEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 113 (163)
T ss_dssp CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred cCCceEEEEEcChhheeeEEcCCChHHHHHHHH
Confidence 12235567799999999999999999999865
No 28
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.10 E-value=1e-10 Score=99.48 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=61.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-----~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
......+.||..+++.||||+|.++|+|+++|||+|+|+...+ .+.|+|+|. .+.|++|+..|+.++.+
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 3467789999999999999999999999999999999987543 457999997 57899999999999876
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.08 E-value=1.8e-10 Score=105.46 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=86.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC---
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP--- 226 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~~~--- 226 (460)
..+..+.||..+++.||||+|+++|+|+++|||+|+|+.... ...|.|+|. .++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~~ 80 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPGG 80 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCCC
Confidence 467889999999999999999999999999999999975422 346899997 8999999999999998753210
Q ss_pred --------------------CCCcceEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 227 --------------------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 227 --------------------k~~~THFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
....+..+.||-..+..|.|+.+..++.|.+.
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 81 PGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp -----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 00136677899999999999999999999875
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.05 E-value=1.6e-10 Score=105.96 Aligned_cols=107 Identities=22% Similarity=0.240 Sum_probs=88.7
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~------~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
..+++..+.||..+++.||||+|+++++|+++|||+|+|+..++ .+.|+|+|. .++|.+|+..|..++.+...
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccCC
Confidence 45788999999999999999999999999999999999987542 246899996 79999999999988865311
Q ss_pred C-----------------CCCCcceEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 225 S-----------------PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 225 ~-----------------~k~~~THFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
. +....+..+.||-..+..|.|+.+..++.|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 82 NVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp C-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 0 001146778899998999999999999999875
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=103.21 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=85.2
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC--
Q 012600 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 226 (460)
Q Consensus 154 ~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-----~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~~~-- 226 (460)
....+.||..+++.||||+|+++|+|+++|||+|+|+..+. ...|+|+|. .++|.+|+..|..++.+....+
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD-PYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEEC-HHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhccCCCCC
Confidence 45789999999999999999999999999999999976532 246899995 7999999999999987633110
Q ss_pred -------CCCcceEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 227 -------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 227 -------k~~~THFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
+...+..+.||..++..|.|+.+..++.|.+.
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHH
Confidence 00124667799988999999999999999876
No 32
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=1.7e-10 Score=98.70 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=59.6
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 155 ~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~------~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
+..+.||.++++.||||+|+++|+|+++|||+|+|+.... ...|+|+| +.++|++|+..|+.++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 7789999999999999999999999999999999987642 25699999 589999999999988865
No 33
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.92 E-value=1.2e-09 Score=96.97 Aligned_cols=71 Identities=28% Similarity=0.411 Sum_probs=61.7
Q ss_pred CCCeEEEEecccc------ccccccCCCchhHHHHHHHhCcEEEcCCCCC-------------------CCcEEEEccCh
Q 012600 151 AERHSLSVEVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-------------------EDSIIIEGNST 205 (460)
Q Consensus 151 ~~~~~~~v~Vp~~------~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-------------------~~~I~ItG~s~ 205 (460)
..+++..|.||.. |.+.|||++|.|+|+||+||||+|.|...++ ...|.|+|.+.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 4588999999998 7789999999999999999999999965321 34689999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 012600 206 DSVAKASEKIQAIIAE 221 (460)
Q Consensus 206 e~V~~A~~rI~~iv~e 221 (460)
+.+++|++.|+.|+..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999865
No 34
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.91 E-value=2.3e-09 Score=96.79 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=63.7
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CC--cEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---ED--SIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~--~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
......+.||..+++.||||+|+++++|+++|||+|+||..+. .+ .|.|+|. .++|..|+..|..++.++.+
T Consensus 83 ~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 83 VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH-FYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC-HHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999987643 22 5899995 89999999999999999765
No 35
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.87 E-value=1.5e-09 Score=97.72 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=61.2
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 012600 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (460)
Q Consensus 154 ~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~---~~~I~ItG~s~e~V~~A~~rI~~iv~e~ 222 (460)
.+..+.||..++++||||+|.++++|+++|||+|+|+.... .+.|+|+|. .++|..|+..|+.+++++
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999999999987654 356999997 899999999999999874
No 36
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=4.3e-09 Score=94.72 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=60.9
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCC---C-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---K-EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~---~-~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
......+.||..+++.||||+|.++++|+++|||+|+|++.. . .+.|+|+|. .++|.+|+..|..++.+
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI-PQSIIECVKQICVVMLE 159 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEEC-HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999999998632 2 467999995 89999999999988765
No 37
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.79 E-value=4.2e-09 Score=108.15 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=57.7
Q ss_pred ccCCCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCCC-------CCcEEEEccChhHHHHHHHHHHHH
Q 012600 148 VPSAERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSKK-------EDSIIIEGNSTDSVAKASEKIQAI 218 (460)
Q Consensus 148 ~~~~~~~~~~v~Vp~~~h~~IIGk~G--~t~k~LE~eT~trI~iP~~~~-------~~~I~ItG~s~e~V~~A~~rI~~i 218 (460)
..+...++..++||+.+|++|||++| ..+++|+++|||+|+||..++ ...|+|+|. +++|..|+.+|+.+
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs-~e~V~~Ark~I~~l 258 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGN-IDNVLKARRYIMDL 258 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESC-HHHHHHHHHHHHHT
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeC-HHHHHHHHHHHHhh
Confidence 44556799999999999999999999 556999999999999998654 246999995 99999999999643
No 38
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.3e-08 Score=89.02 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=58.5
Q ss_pred eEEEEecccc-------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------CCCcEEEEccChhHHHHHHH
Q 012600 154 HSLSVEVGAS-------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------KEDSIIIEGNSTDSVAKASE 213 (460)
Q Consensus 154 ~~~~v~Vp~~-------~h~~IIGk~G~t~k~LE~eT~trI~iP~~~-------------~~~~I~ItG~s~e~V~~A~~ 213 (460)
.+..|.||.. |.+.|||++|.|+|+|++||||+|+|-..+ +...|.|+|.+.+.+++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4567777765 788999999999999999999999995322 12469999999999999999
Q ss_pred HHHHHHHHhh
Q 012600 214 KIQAIIAEAV 223 (460)
Q Consensus 214 rI~~iv~e~~ 223 (460)
.|+.|+....
T Consensus 92 ~Ie~Ll~~v~ 101 (119)
T 2yqr_A 92 LCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhchH
Confidence 9999987643
No 39
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.74 E-value=7.1e-09 Score=95.01 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=60.9
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-----~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
......+.||..+++.||||+|.++|+|+++|||+|+|+.... .+.|+|+|. .++|.+|+..|..++.+
T Consensus 102 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 102 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred CceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999999999987642 357999997 69999999999988865
No 40
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.73 E-value=9.7e-09 Score=85.89 Aligned_cols=67 Identities=25% Similarity=0.284 Sum_probs=59.0
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcE-EEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVK-IILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~tr-I~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv 219 (460)
...+..++.||+.++|.+||+||.++|+|.++||++ |+|-. +++.|.|.|.+.+.+++|+..|+.+.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 456889999999999999999999999999999998 99942 34789999999999999999995443
No 41
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.70 E-value=1e-08 Score=93.66 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=57.0
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHH
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAI 218 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~------~~~I~ItG~s~e~V~~A~~rI~~i 218 (460)
.....+.||..+++.||||+|.++|+|+++|||+|+|+.... ...|+|+| +.++|..|+..|+.+
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEK 173 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999987531 35699999 589999999999865
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.64 E-value=2.1e-08 Score=90.01 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=57.6
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCc-EEEcCCCCCC------C--cEEEEccChhHHHHHHHHHHHHHHH
Q 012600 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGV-KIILPSSKKE------D--SIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 156 ~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~t-rI~iP~~~~~------~--~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
..+.||...++.+|||+|.|+|.|.+.||+ +|+|++..+. + .|+|+|+ +++|+.|+..|+.++.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999996 9999875431 2 3889996 89999999999988875
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.37 E-value=3.3e-07 Score=82.21 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=48.9
Q ss_pred EEEEeccc------cccccccCCCchhHHHHHHHhCcEEEcCCCCC-C------------------C--cEEEEccChh-
Q 012600 155 SLSVEVGA------SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-E------------------D--SIIIEGNSTD- 206 (460)
Q Consensus 155 ~~~v~Vp~------~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~-~------------------~--~I~ItG~s~e- 206 (460)
+..|.||. .|.|.|||++|.|+|+||+||||+|.|-..|+ . + .|.|+|...+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 34566664 35789999999999999999999999976653 1 1 5889986544
Q ss_pred ----HHHHHHHHHHHHH
Q 012600 207 ----SVAKASEKIQAII 219 (460)
Q Consensus 207 ----~V~~A~~rI~~iv 219 (460)
.+++|++.|+.++
T Consensus 83 ~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 6777777776554
No 44
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.18 E-value=2e-06 Score=82.46 Aligned_cols=63 Identities=29% Similarity=0.322 Sum_probs=57.1
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccC----hhHHHHHHHHHHHHH
Q 012600 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNS----TDSVAKASEKIQAII 219 (460)
Q Consensus 155 ~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s----~e~V~~A~~rI~~iv 219 (460)
...+.||+..++.|||++|.+++.|+++||++|+|... ++.|.|.|.. .+.+.+|++.|..++
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~--~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE--TGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT--TCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC--CCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999743 4679999875 699999999999988
No 45
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.06 E-value=2.2e-06 Score=76.75 Aligned_cols=94 Identities=18% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhhCCCCCcc
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYS 231 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~~~k~~~T 231 (460)
.+++..+.||..++|.+||++|+++++|++|+|+.|..++. +...+++.|.+.+.|.+|+.-+. - .+
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~-~~~~~i~~~~~p~~v~~~~~~l~-------~-----~e 68 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE-DTCTFHIYGEDQDAVKKARSFLE-------F-----AE 68 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET-TTTEEEEEESSHHHHHHHHHHHC-------E-----EE
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC-CchheeeccCCHHHHHHHHHhhh-------c-----ce
Confidence 46788999999999999999999999999999944433332 24567888877888988876321 1 13
Q ss_pred eEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 232 HFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 232 HFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
..|.+|-..+..+.|+.+..++.+.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 667799988999999999999988765
No 46
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.98 E-value=3e-06 Score=92.42 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=57.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv 219 (460)
--..++.||+...+.|||+||.++|+|+++|||+|+|- +++.|.|.|++.+.+++|++.|+.|+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~---d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV---DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 34788999999999999999999999999999999996 35789999999999999999998765
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.92 E-value=1.1e-05 Score=77.29 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=48.0
Q ss_pred ccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 164 VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 164 ~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
..+.||||+|+|++.||+.|||+|.|+. ..|.|.|. .++|+.|++.|..+++.
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~-~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGN-PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeC-HHHHHHHHHHHHHHHcC
Confidence 5778999999999999999999999963 56999996 79999999999999954
No 48
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.46 E-value=7.8e-05 Score=70.04 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=48.4
Q ss_pred cccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 163 SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 163 ~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
...+.||||+|.|++.||+-|||+|.|.. +.|.|.|. -++++.|+.-|..++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~-~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGD-YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEE-HHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeC-hHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999999964 37999996 79999999999999853
No 49
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.23 E-value=6e-05 Score=83.36 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=14.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 154 ~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
-..++.||+...+-+||+||.++|+|.++||++|+|- +++.|.|.+..++.+++|+++|+.++.+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp C----------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 3678899999999999999999999999999999984 4577999999999999999999988865
No 50
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.01 E-value=0.00094 Score=62.66 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=54.7
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEE-----ccChhHHHHHHHHHHHHHH
Q 012600 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIE-----GNSTDSVAKASEKIQAIIA 220 (460)
Q Consensus 154 ~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~It-----G~s~e~V~~A~~rI~~iv~ 220 (460)
....+.||+.-.+.|||++|++++.|++.+|++|+|-. .++.+.|+ |. ...+.+|++-|..|..
T Consensus 4 ~~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~d-p~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 4 PRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIP-PVNLMKAAEVVKAISL 72 (191)
T ss_dssp CCEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSC-HHHHHHHHHHHHHHHH
T ss_pred cceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCC-HHHHHHHHHHHHHHHc
Confidence 34689999999999999999999999999999999943 24567777 54 6899999999998874
No 51
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=96.96 E-value=0.00026 Score=68.82 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=83.3
Q ss_pred CceEEEEccCCcchHHHHHhhccccccccccccCCCCCCCCCCCCcCCccCCCcceEEeeccccCC-------------h
Q 012600 288 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWN-------------K 354 (460)
Q Consensus 288 n~FVAv~i~~~~i~~~v~~vq~~i~~~~~~~~~~k~~~~~~~Gld~~~fv~p~~LHLTL~~L~L~~-------------e 354 (460)
|.+|+---...++.+.+..+|+.|. +.+.. +.-.|.||+.+|+||.=+--.. +
T Consensus 43 nTvI~~l~~~s~~~~~l~~iq~~L~---------~~~~~-----~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d 108 (243)
T 2fsq_A 43 NTVVCHLVEGSQTESAIVSTRQRFL---------DMPEA-----SQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLD 108 (243)
T ss_dssp EEEEEEBCTTSHHHHHHHHHHHHHH---------TSGGG-----GGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTT
T ss_pred CeEEEecCCCChHHHHHHHHHHHHH---------hcccc-----CceeeCCchhhhhhhccccccccccCCCCCccCccc
Confidence 6677776666777899999999883 11111 1226999999999995322211 3
Q ss_pred hHHHHHHHHHHHhHHhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCcccC
Q 012600 355 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRD 434 (460)
Q Consensus 355 eev~~A~~~L~~i~~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~~~d 434 (460)
..++.+.+.+.+- +...-...||.+++.|+. +. -|..++..+ .....|..+.+.|.+ ..|+...
T Consensus 109 ~~l~~~~~~~~~~---l~~~~~~~p~~~~v~~l~--~~-----~v~L~Pade-~~~~~L~~~R~~l~q---~lGi~~p-- 172 (243)
T 2fsq_A 109 TPIDAVTDYYRDR---LSTFPTLPAFNMRVTGLR--PV-----GMVMKGATA-EDDSIVALWRDTFAD---FFGYRHP-- 172 (243)
T ss_dssp CCHHHHHHHHHHH---GGGCCCCCCCCEEEEEEE--TT-----EEEEEESSH-HHHHHHHHHHHHHHH---HHTCCCT--
T ss_pred chHHHHHHHHHHH---HhcccCCCCeEEEEeccc--cc-----eEEEecCCH-HHHHHHHHHHHHHHH---HhCCCCC--
Confidence 3455555555432 222222379999999993 32 566666654 234556666665555 5688764
Q ss_pred CCCCcceeEEeeeec
Q 012600 435 YNKKLKLHATLMNIR 449 (460)
Q Consensus 435 e~r~fkpHlTL~n~k 449 (460)
+...|++|+||+-.-
T Consensus 173 ~hd~y~fHITLgY~~ 187 (243)
T 2fsq_A 173 DHDTYEFHITLSYIV 187 (243)
T ss_dssp TGGGCCEEEECEEES
T ss_pred CCcceEEEEEEEecc
Confidence 356899999998654
No 52
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.63 E-value=0.0039 Score=55.52 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=57.4
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012600 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 154 ~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~--~~~I~ItG~s~e~V~~A~~rI~~iv~e~~~ 224 (460)
.-..+.|...+.+.|+|++|+.|+.||..++|.|++-+-.+ ...|+|.|+ ...-.+|+..|+.+.+--++
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999977655 457999997 56667777777777765443
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.37 E-value=0.0073 Score=66.91 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=0.0
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 155 ~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
..++.||+...+-+||+||.++++|.++||+.|+|-. .+.|.|.+...+.+.+|+++|+.+..+
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 4677899999999999999999999999999998863 467999988888889998888777643
No 54
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.62 E-value=0.0037 Score=69.53 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=23.5
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 012600 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (460)
Q Consensus 155 ~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv 219 (460)
...+.||+..++-+||+||.++|+|.++||+.|+|-. .+.|.|.+.+.+..++|+++|+.+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999863 5779999988888888877776654
No 55
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=68.83 E-value=1 Score=40.16 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=34.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEc
Q 012600 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIIL 189 (460)
Q Consensus 152 ~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~i 189 (460)
......+.||..-.+..|||+|.+.+...+-||.+|+|
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 35678899999999999999999999999999998876
No 56
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=65.85 E-value=3.5 Score=36.71 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP 190 (460)
...-.+.+-|+.-..+..||++|+.++.|+++.|-+|+|=
T Consensus 33 ~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 33 EENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp GGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CCCCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 3345667888888899999999999999999999999873
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=62.28 E-value=0.077 Score=44.59 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=41.8
Q ss_pred EEccChhHHHHHHHHHHHHHHHhhhCCCCCcceEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 200 IEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 200 ItG~s~e~V~~A~~rI~~iv~e~~~~~k~~~THFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
|+|+ +++|..|+..|..++.+ . .|.-|.||..+|.+|+|+.+..++.|.++
T Consensus 5 i~G~-~~~V~~A~~~i~~~~~~------~-~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 5 SSGE-PEKLGQALTEVYAKANS------F-TVSSVAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp CCCC-CCCCCCSCCCCCCCCCC------C-EEEEEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred cCcC-HHHHHHHHHHHHHHhcC------e-EEEEEEeCHHHHhhhcCCCCccHHHHHHH
Confidence 5786 68899999888755432 2 57888899999999999999999999875
No 58
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=60.19 E-value=19 Score=34.11 Aligned_cols=63 Identities=25% Similarity=0.271 Sum_probs=51.7
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012600 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (460)
Q Consensus 156 ~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~e 221 (460)
..+.|+..+.+.++|++|..+..|.+.+++.|.+ +..+-|-|.+.+...+..+..-|+.+-.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~v---G~NG~IWi~~~~~~~~~~~~~ai~~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV---ARNGRIHLECPNEDLEAIAVMAIKIIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE---ETTTEEEEECSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---eCCCEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999999998 33577999998766777666666655443
No 59
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=53.91 E-value=7.8 Score=37.58 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.3
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 192 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~ 192 (460)
.....+.||..-.+.-|||+|.|++.--.-||.+|+|-+.
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 3578999999999999999999999999999999998544
No 60
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=49.10 E-value=21 Score=33.71 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=48.0
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHH
Q 012600 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIA 220 (460)
Q Consensus 156 ~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~iv~ 220 (460)
.-+.++..+.+.++|+++..+..|...+++.|.+ +..+-|-|.+.+ .....+..-|+.+-.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~-~~~~~~~~ai~~~e~ 198 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDR-RKVSIAEEAIYLIEQ 198 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE---CTTSEEEEESCH-HHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE---ECCcEEEEeCCc-hhHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999998 456778899763 455555555554443
No 61
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=48.20 E-value=10 Score=38.70 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 012600 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 192 (460)
Q Consensus 153 ~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~ 192 (460)
.....+.||..-.+..|||+|.|.+..-.-||.+|+|-+.
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 5678999999999999999999999999999999998544
No 62
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=48.01 E-value=9.8 Score=38.48 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 012600 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (460)
Q Consensus 151 ~~~~~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP 190 (460)
.......+.||..-.+.-|||+|.|.+.--.-||.+|+|-
T Consensus 300 ~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 300 KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 3467889999999999999999999999999999999984
No 63
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=47.25 E-value=1e+02 Score=28.86 Aligned_cols=79 Identities=11% Similarity=0.301 Sum_probs=49.1
Q ss_pred CcceEEeeccccCChhHHHHHHHHHHHhHHhhhhhcCCCCe-EEEeccccCCCCCCCCceE-------EEEeceecCC--
Q 012600 340 KTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKARI-------LYAPVEEIGD-- 409 (460)
Q Consensus 340 ~~LHLTL~~L~L~~eeev~~A~~~L~~i~~~i~d~L~~~pf-~l~lkGLg~F~~dp~~~rV-------Lya~V~~~d~-- 409 (460)
.++||.+ ..++|..|.++|..|-.. ...|+ .-.+..+..- +...|| ||+++...+.
T Consensus 80 DK~HiSV------~~~qv~~AF~ai~~LL~S-----eDSPvDKWKVTDM~rv---~~qsRV~~GAQfTLY~Kpd~eds~Y 145 (218)
T 3i0u_A 80 DKFHISI------AREQVPLAFQILSGLLFS-----EDSPIDKWKITDMNRV---SQQSRVGIGAQFTLYVKSDQECSQY 145 (218)
T ss_dssp EEEEECB------CGGGHHHHHHHHHHHHTC-----TTCSCSEEEEECTTTC---C----CCSSCCEEEEEECCSSTTCC
T ss_pred ceEEEEe------cHHHHHHHHHHHHHHhcC-----CCCCcceeeecccccC---cchhhhcccceEEEEecCccccccC
Confidence 5799987 468899999999877311 12232 2222233322 233444 8999987543
Q ss_pred ----chHHHHHHHHHHHHHHHCCCCcc
Q 012600 410 ----GDRLLHACQVIIDAFNEAGLVFH 432 (460)
Q Consensus 410 ----~~~L~~L~~~L~~~f~~~Gl~~~ 432 (460)
..+...+-..|+..|.++|+.+.
T Consensus 146 s~~~l~k~r~fi~~iE~~L~~agi~pg 172 (218)
T 3i0u_A 146 SALLLHKIRQFIMCLESNLLRSKIAPG 172 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 22455677788999999999974
No 64
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=44.93 E-value=19 Score=32.77 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=45.9
Q ss_pred EEeccccccccccCCCch-hHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 012600 157 SVEVGASVIRFIKGKEGS-TQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 217 (460)
Q Consensus 157 ~v~Vp~~~h~~IIGk~G~-t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~~ 217 (460)
-+.||..+.+.++|++|. .++.|.+.+++.|.+ |..+-|-|.+.+......+..-|..
T Consensus 94 l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 94 IIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAI---GLNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEE---ETTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEE---ECCcEEEEecCCHHHHHHHHHHHHH
Confidence 688999999999999888 999999999999988 4456789998765554444444544
No 65
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=40.69 E-value=91 Score=29.26 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=51.0
Q ss_pred CcceEEeeccccCChhHHHHHHHHHHHhHHhhhhhcCCCCe-EEEeccccCCCCCCCCce-------EEEEeceecCC--
Q 012600 340 KTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKAR-------ILYAPVEEIGD-- 409 (460)
Q Consensus 340 ~~LHLTL~~L~L~~eeev~~A~~~L~~i~~~i~d~L~~~pf-~l~lkGLg~F~~dp~~~r-------VLya~V~~~d~-- 409 (460)
.++||.+ ..++|..|-++|..|-.. +..|+ .-.+..+..- +...| .||+++...+.
T Consensus 82 DKfHiSV------~~~qv~~AF~al~~LL~S-----eDSPvDKWKVTDM~rv---~~qsRV~~GAQfTLY~Kpd~edsqY 147 (220)
T 3bo6_A 82 DKFHISV------QREQVPQAFQALSGLLFS-----VDSPIDKWKVTDMERV---DQQSRVAVGAQFTLYVKPDQENSQY 147 (220)
T ss_dssp EEEEECB------CGGGHHHHHHHHHHHHTC-----TTCSCSEEEEECTTTB---CTTSTTTSSCCEEEECCCSSTTSCC
T ss_pred ceEEEEe------cHHHHHHHHHHHHHhhcC-----CCCCcceeeecccccc---chhhhhcccceEEEEecCccccccC
Confidence 6899988 468899999999887311 12332 2222233322 23334 48999987543
Q ss_pred ----chHHHHHHHHHHHHHHHCCCCccc
Q 012600 410 ----GDRLLHACQVIIDAFNEAGLVFHR 433 (460)
Q Consensus 410 ----~~~L~~L~~~L~~~f~~~Gl~~~~ 433 (460)
......+-..|+..|.++|+.+.+
T Consensus 148 s~~~l~k~r~fi~~lE~~L~~aGi~pg~ 175 (220)
T 3bo6_A 148 SASSLHNTRQFIECLESRLSESGLMPGQ 175 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 224556777889999999999743
No 66
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=38.76 E-value=15 Score=32.84 Aligned_cols=102 Identities=13% Similarity=0.021 Sum_probs=59.2
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEE--EEccChhHHHHHHHHHHHHHHHhhhCCCCCcce
Q 012600 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSII--IEGNSTDSVAKASEKIQAIIAEAVESPSLDYSH 232 (460)
Q Consensus 155 ~~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~--ItG~s~e~V~~A~~rI~~iv~e~~~~~k~~~TH 232 (460)
...+.|.-+-.+.||||.|.|+..|+-=++.-++=-. . -.|. |.|- ++.-+....++..=+++.++.-+.+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~--~-~~V~LDve~Y-RerReetL~~lA~~~A~kV~~tgk~v~- 108 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY--G-YSIRLEISTF-LQNQEKVMDTQLQSVIMTVHEVGKGQM- 108 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH--S-CEEEEEETTH-HHHHHHHHHHHHHHHHHHHHHTSCEEE-
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC--C-ceEEEEhHHh-HHHHHHHHHHHHHHHHHHHHHHCCcCC-
Confidence 4677777888999999999999999987643222110 0 1122 3333 566666666555444443332133322
Q ss_pred EEeeccccchhhhhhHHHHHHHHhcccccccccccCCCCCccccchHHhhhcccCCceEEEEcc
Q 012600 233 FVSLPLAVHPELVDKLVNFQNTILGITDVCLDENVGSKSNEDASDSEEKEQQVDQEHKVAVELN 296 (460)
Q Consensus 233 FIsIPl~~hP~I~g~~~~F~~sIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rpn~FVAv~i~ 296 (460)
-|.. . ..++..|++. ...-|+-+|.|+-.
T Consensus 109 ---~p~e--r-------riIH~aLq~~-----------------------~~~eP~R~VvI~~~ 137 (152)
T 2pt7_G 109 ---KAPD--G-------VLTYIALKKL-----------------------RKAFPNKYVSIKTN 137 (152)
T ss_dssp ---ECCS--T-------THHHHHHHHH-----------------------HHHCTTSCEEEEEC
T ss_pred ---CCCc--h-------HHHHHHHHhC-----------------------cccCCCcEEEEEec
Confidence 4432 1 6667777651 11368888998765
No 67
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=32.36 E-value=17 Score=35.21 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=20.8
Q ss_pred eEEEEecccccc-ccccCCCchhHHHHH
Q 012600 154 HSLSVEVGASVI-RFIKGKEGSTQKKFE 180 (460)
Q Consensus 154 ~~~~v~Vp~~~h-~~IIGk~G~t~k~LE 180 (460)
....+.|.++-| ++|||++|+++|+|.
T Consensus 230 i~~~i~ve~~~~k~iiig~~g~~lk~i~ 257 (301)
T 1wf3_A 230 IKAILYVERPSQKAIVIGEGGRKIKEIG 257 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHH
T ss_pred EEEEEEEeeCCceEEEEeCCchHHHHHH
Confidence 345677776655 689999999999883
No 68
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=31.59 E-value=70 Score=28.49 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=26.7
Q ss_pred CCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCcccCCCCCcceeEEee
Q 012600 393 SKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLM 446 (460)
Q Consensus 393 dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~~~de~r~fkpHlTL~ 446 (460)
.+...+-+|+-+ +.+-...|.++.+.+...+ |. .++.||+||+
T Consensus 4 ~~~~~~~f~~~p-p~~~~~~l~~~~~~l~~~~---~~-------~~~~~HiTLl 46 (189)
T 1jh6_A 4 VKKDVYSVWALP-DEESEPRFKKLMEALRSEF---TG-------PRFVPHVTVA 46 (189)
T ss_dssp CCCEEEEEEEEE-CTTTHHHHHHHHHHHHHHH---TC-------CCCCCCEEEE
T ss_pred CCCCcEEEEEEC-CHHHHHHHHHHHHHHHHHc---CC-------CCCCCEEEEe
Confidence 355567788876 4333456777776665533 22 2479999985
No 69
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=31.19 E-value=19 Score=29.43 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=21.5
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhC
Q 012600 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMG 184 (460)
Q Consensus 156 ~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~ 184 (460)
+.|.|-...-+.+||++|..+++|..+-.
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~l~ 65 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAVVQ 65 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHHHH
Confidence 45555566679999999998887766544
No 70
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=30.75 E-value=74 Score=27.86 Aligned_cols=81 Identities=6% Similarity=-0.003 Sum_probs=49.3
Q ss_pred ccCChhHHHHHHHHHHHhHHhhhhhcCCCCeEEEeccccCC----------CCCCCCceEEEEece-ecCCchHHHHHHH
Q 012600 350 KLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHACQ 418 (460)
Q Consensus 350 ~L~~eeev~~A~~~L~~i~~~i~d~L~~~pf~l~lkGLg~F----------~~dp~~~rVLya~V~-~~d~~~~L~~L~~ 418 (460)
..+++++.......+..+...+.+.+....+.+-.-|-.+| .+|+.-+..+|.... ..-..+.|.++++
T Consensus 48 ~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~a~ 127 (149)
T 3i24_A 48 HHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVD 127 (149)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHHH
T ss_pred hHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHHHH
Confidence 45567776666666666666666655555566655554444 333444445554211 1113578999999
Q ss_pred HHHHHHHHCCCC
Q 012600 419 VIIDAFNEAGLV 430 (460)
Q Consensus 419 ~L~~~f~~~Gl~ 430 (460)
.|+..+...|..
T Consensus 128 kIr~~L~~~~~~ 139 (149)
T 3i24_A 128 LLRDKLSNISGF 139 (149)
T ss_dssp HHHHHHTTSTTC
T ss_pred HHHHHHHhccch
Confidence 999999876543
No 71
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=30.60 E-value=1.2e+02 Score=25.98 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhHHhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCc
Q 012600 355 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (460)
Q Consensus 355 eev~~A~~~L~~i~~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~ 431 (460)
+-+..+.++|..-+ ...-..|.++|+..+-+ -.+-+.- .+...++.+++.|.+.+.+.|+.+
T Consensus 5 ~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D-----yfVIatg---~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 5 ELLQLAVNAVDDKK-------AEQVVALNMKGISLIAD-----FFLICHG---NSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp HHHHHHHHHHHHTT-------CEEEEEEECBTTBC--C-----EEEEEEE---SSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC-----EEEEEEc---CCHHHHHHHHHHHHHHHHHcCCcc
Confidence 44555666666543 23446788899999988 3333332 346789999999999999999865
No 72
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=28.75 E-value=24 Score=28.70 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCccccccccccccCCcccccccccccccc
Q 012600 36 GGCSYYSLSCDWKMGGARDNQGAVYGDKKQK 66 (460)
Q Consensus 36 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~k~k 66 (460)
-.|+|||..| +-++.-+++++.|||+
T Consensus 28 KkCc~HCq~C-----F~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 28 KKSAYHSQVA-----FITKGLGISYGRKKRR 53 (86)
T ss_dssp TTTTTTCCCS-----CSSTTSSSSSCCCSGG
T ss_pred cchhhhhhHH-----HccCCCceEecccccc
Confidence 4689999999 6777788999998876
No 73
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.96 E-value=21 Score=35.20 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=45.5
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHH
Q 012600 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQ 216 (460)
Q Consensus 156 ~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI~ 216 (460)
.-+.||..+.+.++|+++..++.|.+.+++.|.+ +..+-|-|.+.+......+..-|.
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~v---G~NG~IWI~~~~~~~~~~i~~aI~ 269 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVF---GMNGRIWVKAKTIQQTLILANILE 269 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEE---ETTTEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEE---ECCcEEEEecCChhHHHHHHHHHH
Confidence 3688999999999999999999999899999887 345678898876555444444443
No 74
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=26.90 E-value=1.6e+02 Score=25.46 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHHhhhhhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCCc
Q 012600 357 VNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (460)
Q Consensus 357 v~~A~~~L~~i~~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~~ 431 (460)
+..+.++|..-+ ...-..|.++|+..+-+ -.+-+.- .+...++.+++.|.+.+.+.|+.+
T Consensus 7 ~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D-----yfVIaTg---~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 7 SKLAIEALEDIK-------GKDIIELDTSKLTSLFQ-----RMIVATG---DSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp HHHHHHHHHHTT-------CEEEEEEEGGGTCSSCS-----EEEEEEC---SSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcC-------CCCeEEEEcCCCCcccC-----EEEEEEc---CCHHHHHHHHHHHHHHHHHcCCcC
Confidence 445555555443 23456788899999988 3333322 346789999999999999999865
No 75
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=26.28 E-value=31 Score=29.35 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=23.1
Q ss_pred CcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 012600 196 DSIIIEGN----STDSVAKASEKIQAIIAEAVE 224 (460)
Q Consensus 196 ~~I~ItG~----s~e~V~~A~~rI~~iv~e~~~ 224 (460)
+.|+|+.. ...+.+.|.+++..++.++..
T Consensus 76 G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 76 GELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 45888874 256889999999999998665
No 76
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=25.11 E-value=1.4e+02 Score=28.65 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhHHhhh---hhcCCCCeEEEeccccCCCCCCCCceEEEEeceecCCchHHHHHHHHHHHHHHHCCCC
Q 012600 354 KDRVNAATNVLKSISSKVM---DALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLV 430 (460)
Q Consensus 354 eeev~~A~~~L~~i~~~i~---d~L~~~pf~l~lkGLg~F~~dp~~~rVLya~V~~~d~~~~L~~L~~~L~~~f~~~Gl~ 430 (460)
+.+++++.+.|+++-..+. +.+..+|..+.+.+++-.. =..+ +|+.+.+.+....-.++...|.+.|.++|+.
T Consensus 191 ~~d~~~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~~~~~s~---i~~~-v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~ 266 (285)
T 3udc_A 191 DEDVDKIIEGLQEICEEVKKSRDDLIEGPTVLGITDMQDSK---LVIM-VYAKTQPMQKWAVERDIRYRVKKMFDQKNIS 266 (285)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCSSBSSCCEEEEEEEEETTE---EEEE-EEEEESTTCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccCcccccccccCCCE---EEEE-EEEEECcchHHHHHHHHHHHHHHHHHHCCCc
Confidence 3455666666665533322 2223355556665554321 1122 2333433222223357888999999999997
Q ss_pred c
Q 012600 431 F 431 (460)
Q Consensus 431 ~ 431 (460)
.
T Consensus 267 i 267 (285)
T 3udc_A 267 F 267 (285)
T ss_dssp C
T ss_pred C
Confidence 6
No 77
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=25.07 E-value=2.4e+02 Score=26.98 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=49.8
Q ss_pred cceEEeeccccCChhHHHHHHHHHHHhHHhhhhhcCCCCeEEEeccccCCCCCCCCceE-EEEeceecCCchHHHHHHHH
Q 012600 341 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARI-LYAPVEEIGDGDRLLHACQV 419 (460)
Q Consensus 341 ~LHLTL~~L~L~~eeev~~A~~~L~~i~~~i~d~L~~~pf~l~lkGLg~F~~dp~~~rV-Lya~V~~~d~~~~L~~L~~~ 419 (460)
...+++ ++.-+.+++++.+.|.++-......+..++..+.+.+++-..= ..+| .|+... +-...-.++...
T Consensus 185 r~~~~v---~v~y~~d~~~v~~~l~~~~~~~~~vl~~p~p~v~v~~~~~~~i---~~~v~~~~~~~--~~~~~~~~l~~~ 256 (286)
T 2vv5_A 185 RNEFII---GVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSI---NFVVRVWSNSG--DLQNVYWDVLER 256 (286)
T ss_dssp EEEEEE---EECTTSCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSE---EEEEEEEEETT--THHHHHHHHHHH
T ss_pred EEEEEE---EEcCCCCHHHHHHHHHHHHHhCcccccCCCCEEEEEEecCCeE---EEEEEEEEccc--hHHHHHHHHHHH
Confidence 345555 3444566778888887764443345555677888777754211 1122 244432 222334578888
Q ss_pred HHHHHHHCCCCc
Q 012600 420 IIDAFNEAGLVF 431 (460)
Q Consensus 420 L~~~f~~~Gl~~ 431 (460)
+.+.|.+.|+..
T Consensus 257 i~~~~~~~gI~i 268 (286)
T 2vv5_A 257 IKREFDAAGISF 268 (286)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHCCCcC
Confidence 999999999986
No 78
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=23.23 E-value=40 Score=32.50 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.9
Q ss_pred CeEEEEecccccc-ccccCCCchhHHHH
Q 012600 153 RHSLSVEVGASVI-RFIKGKEGSTQKKF 179 (460)
Q Consensus 153 ~~~~~v~Vp~~~h-~~IIGk~G~t~k~L 179 (460)
.....+.|.++=+ +.||||+|+++|+|
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i 266 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEI 266 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHH
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHH
Confidence 4677888888754 56899999999987
No 79
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=22.77 E-value=13 Score=35.80 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=37.9
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHH
Q 012600 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKI 215 (460)
Q Consensus 156 ~~v~Vp~~~h~~IIGk~G~t~k~LE~eT~trI~iP~~~~~~~I~ItG~s~e~V~~A~~rI 215 (460)
..+.++..+.+.++|++|..+..|.+.+++.|.+ +..+-|-|.+.+...+..+..-|
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~~~~aI 213 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAI 213 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEE---CTTSEEEC-----CTTCCTHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---ECCcEEEEeCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999988 44567888876443444343334
No 80
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.97 E-value=4.4 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=27.0
Q ss_pred cceEEeeccccchhhhhhHHHHHHHHhcc
Q 012600 230 YSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (460)
Q Consensus 230 ~THFIsIPl~~hP~I~g~~~~F~~sIl~~ 258 (460)
.++.+.||-.+|..|.|+.+..++.|.++
T Consensus 17 vt~~i~Ip~~~i~~iIG~gGk~Ir~I~ee 45 (95)
T 2ctj_A 17 AEVEVSIPAKLHNSLIGTKGRLIRSIMEE 45 (95)
T ss_dssp CCEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECHHHHhhhCCCCchhHHHHHHH
Confidence 68899999999999999999999999876
Done!