Query 012601
Match_columns 460
No_of_seqs 145 out of 1067
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01301 GPH_sucrose GPH fami 100.0 1.6E-59 3.4E-64 490.8 28.1 388 3-449 85-476 (477)
2 KOG0637 Sucrose transporter an 100.0 9.1E-53 2E-57 422.6 15.1 379 1-442 111-495 (498)
3 KOG0569 Permease of the major 99.9 1.2E-23 2.7E-28 218.9 14.8 340 42-453 121-463 (485)
4 PF13347 MFS_2: MFS/sugar tran 99.9 8.4E-21 1.8E-25 197.6 18.7 304 10-420 51-387 (428)
5 TIGR00792 gph sugar (Glycoside 99.8 3.3E-19 7.1E-24 185.1 20.9 336 7-449 46-425 (437)
6 TIGR00887 2A0109 phosphate:H+ 99.8 1.6E-18 3.5E-23 184.3 19.3 353 45-453 123-497 (502)
7 KOG0254 Predicted transporter 99.8 6.9E-19 1.5E-23 187.8 14.0 343 42-453 147-492 (513)
8 TIGR01299 synapt_SV2 synaptic 99.8 1.2E-18 2.6E-23 191.7 11.1 141 286-452 601-741 (742)
9 PRK10429 melibiose:sodium symp 99.8 3.6E-17 7.9E-22 172.8 21.8 314 6-420 52-396 (473)
10 PRK10077 xylE D-xylose transpo 99.8 6.6E-18 1.4E-22 177.5 15.5 320 48-453 131-466 (479)
11 PRK11551 putative 3-hydroxyphe 99.7 8.9E-17 1.9E-21 165.4 20.2 291 45-449 111-401 (406)
12 PF00083 Sugar_tr: Sugar (and 99.7 5.8E-21 1.3E-25 199.4 -12.5 337 45-456 110-448 (451)
13 COG2211 MelB Na+/melibiose sym 99.7 2.9E-16 6.3E-21 162.6 22.2 304 10-420 62-399 (467)
14 TIGR00898 2A0119 cation transp 99.7 2.7E-17 5.9E-22 174.4 13.9 315 45-453 188-503 (505)
15 TIGR00879 SP MFS transporter, 99.7 1.9E-16 4.1E-21 164.2 19.7 338 45-453 135-479 (481)
16 PRK09669 putative symporter Ya 99.7 2.3E-16 5.1E-21 165.0 19.6 308 4-420 53-391 (444)
17 TIGR00893 2A0114 d-galactonate 99.7 4.5E-16 9.7E-21 157.0 20.9 307 45-442 90-397 (399)
18 PRK10489 enterobactin exporter 99.7 1.2E-15 2.5E-20 158.1 19.1 284 53-454 126-409 (417)
19 PRK10642 proline/glycine betai 99.7 2.2E-15 4.8E-20 159.8 20.4 309 47-453 128-438 (490)
20 TIGR00899 2A0120 sugar efflux 99.7 2E-15 4.3E-20 153.0 18.8 272 52-446 102-375 (375)
21 PRK11462 putative transporter; 99.7 3.7E-15 8E-20 157.1 20.8 298 9-419 58-389 (460)
22 PRK09952 shikimate transporter 99.7 2.6E-15 5.7E-20 157.0 18.8 301 47-448 135-436 (438)
23 PRK11010 ampG muropeptide tran 99.7 6.6E-15 1.4E-19 156.4 21.4 316 12-443 61-402 (491)
24 PF11700 ATG22: Vacuole efflux 99.7 4.6E-15 9.9E-20 156.5 19.5 344 4-450 78-473 (477)
25 PRK09874 drug efflux system pr 99.6 7E-15 1.5E-19 150.9 19.7 277 53-444 122-398 (408)
26 TIGR00901 2A0125 AmpG-related 99.6 5E-15 1.1E-19 149.8 17.9 300 8-401 32-355 (356)
27 PRK10406 alpha-ketoglutarate t 99.6 1.6E-14 3.4E-19 150.7 21.8 296 47-453 134-431 (432)
28 TIGR00900 2A0121 H+ Antiporter 99.6 4.5E-15 9.9E-20 148.8 16.4 261 47-418 102-364 (365)
29 PRK03545 putative arabinose tr 99.6 2.5E-14 5.4E-19 146.9 21.1 266 55-444 115-380 (390)
30 PRK11663 regulatory protein Uh 99.6 1.5E-14 3.2E-19 151.1 19.4 304 49-450 123-430 (434)
31 cd06174 MFS The Major Facilita 99.6 3.4E-14 7.4E-19 141.1 17.3 255 43-440 93-348 (352)
32 TIGR00712 glpT glycerol-3-phos 99.6 6.1E-14 1.3E-18 146.5 19.9 301 53-448 134-437 (438)
33 TIGR00883 2A0106 metabolite-pr 99.6 3.2E-14 7E-19 144.0 17.2 271 47-420 106-378 (394)
34 TIGR00890 2A0111 Oxalate/Forma 99.6 4.1E-14 8.9E-19 142.3 17.9 269 52-437 106-375 (377)
35 TIGR00710 efflux_Bcr_CflA drug 99.6 1.2E-13 2.7E-18 140.1 21.3 256 45-412 101-356 (385)
36 PRK11902 ampG muropeptide tran 99.6 8.8E-14 1.9E-18 143.6 20.0 270 56-441 113-387 (402)
37 PRK09848 glucuronide transport 99.6 8E-14 1.7E-18 146.0 19.0 304 6-419 54-390 (448)
38 PRK11646 multidrug resistance 99.6 1.8E-13 3.8E-18 141.6 20.9 274 47-441 109-385 (400)
39 PRK12382 putative transporter; 99.6 8.2E-14 1.8E-18 142.9 18.1 136 286-445 255-390 (392)
40 TIGR00891 2A0112 putative sial 99.6 3.2E-14 6.9E-19 145.1 14.7 280 47-420 110-393 (405)
41 PRK15011 sugar efflux transpor 99.6 1.9E-13 4.1E-18 140.8 20.4 266 58-447 126-393 (393)
42 PRK09705 cynX putative cyanate 99.6 3.6E-14 7.9E-19 146.2 15.1 284 45-451 105-388 (393)
43 PRK11273 glpT sn-glycerol-3-ph 99.6 1.4E-13 3E-18 144.6 19.5 300 53-450 136-442 (452)
44 TIGR00881 2A0104 phosphoglycer 99.6 4.1E-14 8.9E-19 142.4 14.2 283 45-419 91-374 (379)
45 PRK11102 bicyclomycin/multidru 99.6 4.5E-13 9.7E-18 136.2 21.5 287 45-446 87-374 (377)
46 COG2814 AraJ Arabinose efflux 99.6 3.6E-13 7.8E-18 137.1 20.5 277 45-443 109-385 (394)
47 PRK11195 lysophospholipid tran 99.5 4.9E-13 1.1E-17 137.9 21.2 293 47-454 98-391 (393)
48 PRK08633 2-acyl-glycerophospho 99.5 1.9E-13 4E-18 158.9 20.2 300 48-447 114-413 (1146)
49 PRK05122 major facilitator sup 99.5 3.6E-13 7.8E-18 138.4 19.9 140 286-450 255-394 (399)
50 PRK15075 citrate-proton sympor 99.5 2.5E-13 5.4E-18 141.8 18.9 261 55-420 135-397 (434)
51 TIGR00897 2A0118 polyol permea 99.5 8.1E-13 1.8E-17 136.4 22.4 176 230-442 223-399 (402)
52 TIGR00895 2A0115 benzoate tran 99.5 6.2E-14 1.3E-18 142.3 13.5 284 44-414 112-397 (398)
53 TIGR02332 HpaX 4-hydroxyphenyl 99.5 4.7E-13 1E-17 138.9 20.2 305 47-434 106-411 (412)
54 PRK10473 multidrug efflux syst 99.5 6.5E-13 1.4E-17 136.2 20.5 262 48-433 102-363 (392)
55 PRK10213 nepI ribonucleoside t 99.5 6.2E-13 1.3E-17 137.2 19.7 270 47-441 118-388 (394)
56 PRK10091 MFS transport protein 99.5 6.2E-13 1.3E-17 136.3 18.2 273 47-442 101-374 (382)
57 PRK10054 putative transporter; 99.5 2.2E-13 4.7E-18 140.7 14.7 270 57-445 116-385 (395)
58 PRK12307 putative sialic acid 99.5 5.9E-13 1.3E-17 137.8 17.6 294 46-448 115-413 (426)
59 PRK09556 uhpT sugar phosphate 99.5 5.5E-13 1.2E-17 140.6 16.3 298 50-442 135-447 (467)
60 PF07690 MFS_1: Major Facilita 99.5 5.7E-13 1.2E-17 133.1 15.3 260 45-408 93-352 (352)
61 TIGR02718 sider_RhtX_FptX side 99.5 1.8E-12 4E-17 133.0 19.2 178 230-440 209-387 (390)
62 PRK06814 acylglycerophosphoeth 99.5 9.2E-13 2E-17 153.4 18.7 295 48-440 119-418 (1140)
63 TIGR00903 2A0129 major facilit 99.5 2.8E-12 6.1E-17 131.4 20.0 266 57-447 98-367 (368)
64 PF05977 MFS_3: Transmembrane 99.5 1.7E-12 3.7E-17 138.5 19.0 284 56-455 122-406 (524)
65 TIGR00902 2A0127 phenyl propri 99.5 2.4E-12 5.3E-17 132.0 18.4 271 47-440 104-375 (382)
66 PRK11128 putative 3-phenylprop 99.5 2.5E-12 5.4E-17 131.9 18.3 274 48-444 105-379 (382)
67 PRK15402 multidrug efflux syst 99.5 1.5E-11 3.2E-16 126.9 24.1 279 55-446 119-397 (406)
68 TIGR00711 efflux_EmrB drug res 99.5 9.6E-13 2.1E-17 138.4 15.2 294 45-416 98-409 (485)
69 PRK10504 putative transporter; 99.5 3.3E-12 7.2E-17 134.3 19.2 293 47-419 108-417 (471)
70 TIGR00894 2A0114euk Na(+)-depe 99.5 4E-12 8.6E-17 133.7 19.8 304 47-448 141-453 (465)
71 PRK14995 methyl viologen resis 99.4 2.2E-12 4.7E-17 137.2 16.6 283 53-415 110-411 (495)
72 TIGR00892 2A0113 monocarboxyla 99.4 4.3E-12 9.3E-17 133.5 18.4 291 50-440 121-417 (455)
73 TIGR00882 2A0105 oligosacchari 99.4 4.8E-12 1E-16 130.2 17.2 132 287-442 261-393 (396)
74 PRK09528 lacY galactoside perm 99.4 1.5E-12 3.2E-17 135.1 13.5 142 285-450 267-409 (420)
75 PRK03699 putative transporter; 99.4 4.3E-12 9.4E-17 130.6 16.2 269 49-439 107-375 (394)
76 TIGR00889 2A0110 nucleoside tr 99.4 7E-12 1.5E-16 130.5 17.5 148 285-450 256-408 (418)
77 PRK03893 putative sialic acid 99.4 1.1E-11 2.4E-16 131.0 18.8 139 285-446 316-456 (496)
78 PRK03633 putative MFS family t 99.4 1.9E-11 4.1E-16 125.2 16.8 131 286-443 241-371 (381)
79 PRK11043 putative transporter; 99.3 6.2E-11 1.3E-15 122.0 20.3 246 55-417 112-357 (401)
80 PLN00028 nitrate transmembrane 99.3 4E-11 8.7E-16 126.9 18.4 284 56-443 142-432 (476)
81 TIGR01272 gluP glucose/galacto 99.3 6.2E-11 1.3E-15 118.6 18.2 284 38-428 11-299 (310)
82 TIGR00886 2A0108 nitrite extru 99.3 2.2E-11 4.8E-16 123.0 14.5 258 52-401 105-363 (366)
83 TIGR00896 CynX cyanate transpo 99.3 4.3E-11 9.3E-16 121.1 15.8 246 56-421 106-352 (355)
84 PRK11652 emrD multidrug resist 99.3 3.4E-10 7.4E-15 116.2 20.7 245 55-415 114-358 (394)
85 PRK15403 multidrug efflux syst 99.3 6.4E-10 1.4E-14 115.6 22.6 270 55-438 122-391 (413)
86 PRK10133 L-fucose transporter; 99.2 2.6E-10 5.7E-15 119.5 18.1 291 45-439 125-428 (438)
87 COG2270 Permeases of the major 99.2 1.4E-10 3.1E-15 117.6 14.1 302 43-447 121-431 (438)
88 PF03209 PUCC: PUCC protein; 99.2 2.4E-09 5.2E-14 108.8 22.4 296 38-441 90-395 (403)
89 KOG0253 Synaptic vesicle trans 99.2 4.9E-10 1.1E-14 111.5 13.8 323 57-452 185-527 (528)
90 PRK10054 putative transporter; 99.1 3.4E-10 7.4E-15 116.9 13.3 183 226-448 4-186 (395)
91 TIGR00788 fbt folate/biopterin 99.1 7.3E-10 1.6E-14 117.2 15.6 310 45-445 128-446 (468)
92 COG2271 UhpC Sugar phosphate p 99.1 1.9E-09 4.1E-14 109.5 17.4 288 56-441 136-431 (448)
93 KOG0255 Synaptic vesicle trans 99.1 8.5E-10 1.8E-14 117.9 13.5 323 45-453 179-501 (521)
94 KOG2615 Permease of the major 99.1 2.2E-09 4.8E-14 107.4 14.4 289 53-432 136-429 (451)
95 PRK11646 multidrug resistance 99.0 1.4E-09 3E-14 112.5 12.6 181 225-447 8-188 (400)
96 PRK10091 MFS transport protein 99.0 3.7E-09 8E-14 108.4 14.0 182 227-448 1-182 (382)
97 PRK15034 nitrate/nitrite trans 99.0 1.3E-08 2.8E-13 106.8 17.9 284 54-443 144-453 (462)
98 TIGR00885 fucP L-fucose:H+ sym 99.0 1.4E-08 2.9E-13 105.7 17.8 267 47-418 104-382 (410)
99 PRK15403 multidrug efflux syst 99.0 1.8E-09 3.9E-14 112.2 11.0 142 284-449 55-196 (413)
100 KOG2532 Permease of the major 99.0 6.9E-09 1.5E-13 109.3 15.2 295 47-440 138-443 (466)
101 PF07690 MFS_1: Major Facilita 99.0 6.4E-09 1.4E-13 103.8 13.9 174 234-446 1-174 (352)
102 TIGR00880 2_A_01_02 Multidrug 99.0 4.2E-09 9E-14 90.2 10.6 136 288-447 6-141 (141)
103 PRK10207 dipeptide/tripeptide 99.0 6.1E-09 1.3E-13 110.8 13.8 170 226-431 11-181 (489)
104 TIGR00710 efflux_Bcr_CflA drug 99.0 6.8E-09 1.5E-13 105.3 13.3 144 284-451 44-187 (385)
105 KOG0252 Inorganic phosphate tr 99.0 5.5E-10 1.2E-14 114.1 5.0 344 45-453 152-506 (538)
106 TIGR00900 2A0121 H+ Antiporter 98.9 3.7E-09 8E-14 105.9 10.8 181 232-447 2-183 (365)
107 PRK10504 putative transporter; 98.9 7.3E-09 1.6E-13 109.0 12.6 184 230-453 11-194 (471)
108 TIGR00711 efflux_EmrB drug res 98.9 9E-09 2E-13 108.2 13.2 178 233-450 6-183 (485)
109 PRK11195 lysophospholipid tran 98.9 6.8E-09 1.5E-13 107.1 11.5 177 227-448 1-177 (393)
110 PRK03545 putative arabinose tr 98.9 1.5E-08 3.2E-13 104.1 13.7 140 285-448 49-188 (390)
111 PRK09584 tppB putative tripept 98.9 2E-08 4.4E-13 107.1 15.0 186 226-447 18-207 (500)
112 TIGR00924 yjdL_sub1_fam amino 98.9 2E-08 4.3E-13 106.5 14.5 177 226-438 7-186 (475)
113 TIGR00895 2A0115 benzoate tran 98.9 1.8E-08 3.9E-13 102.1 13.5 140 285-448 57-196 (398)
114 PRK10213 nepI ribonucleoside t 98.9 1.9E-08 4E-13 103.9 13.5 141 285-449 60-200 (394)
115 COG2223 NarK Nitrate/nitrite t 98.9 8.9E-09 1.9E-13 104.6 10.5 282 52-443 119-400 (417)
116 TIGR00891 2A0112 putative sial 98.9 2.6E-08 5.6E-13 101.5 14.0 178 232-448 15-192 (405)
117 PRK10473 multidrug efflux syst 98.9 2.6E-08 5.5E-13 102.2 13.5 142 285-450 43-184 (392)
118 TIGR02332 HpaX 4-hydroxyphenyl 98.8 3.1E-08 6.8E-13 102.9 13.7 140 285-448 48-193 (412)
119 PRK15402 multidrug efflux syst 98.8 3.2E-08 7E-13 102.0 13.3 142 284-449 52-193 (406)
120 PRK11663 regulatory protein Uh 98.8 3.6E-08 7.8E-13 103.0 13.6 139 285-447 63-201 (434)
121 PRK10207 dipeptide/tripeptide 98.8 1.7E-07 3.6E-12 99.8 18.7 113 288-412 317-436 (489)
122 TIGR00924 yjdL_sub1_fam amino 98.8 1.2E-07 2.5E-12 100.6 17.4 143 285-442 317-466 (475)
123 PRK14995 methyl viologen resis 98.8 3.7E-08 8.1E-13 104.8 13.6 144 284-450 45-188 (495)
124 TIGR00893 2A0114 d-galactonate 98.8 1.9E-08 4.1E-13 101.2 10.4 142 284-449 33-174 (399)
125 TIGR00881 2A0104 phosphoglycer 98.8 2.2E-08 4.7E-13 100.7 10.3 140 285-448 35-175 (379)
126 PRK11551 putative 3-hydroxyphe 98.8 6.4E-08 1.4E-12 99.5 13.5 140 285-448 55-194 (406)
127 PF01306 LacY_symp: LacY proto 98.8 1.9E-07 4E-12 96.4 16.2 292 47-451 114-407 (412)
128 PRK15462 dipeptide/tripeptide 98.8 1.4E-07 2.9E-12 100.1 15.1 177 227-439 7-184 (493)
129 PRK09874 drug efflux system pr 98.8 1.3E-07 2.8E-12 97.1 14.6 182 230-447 15-196 (408)
130 TIGR00897 2A0118 polyol permea 98.8 1.1E-07 2.4E-12 98.1 14.2 183 227-445 11-194 (402)
131 TIGR00899 2A0120 sugar efflux 98.8 8.9E-08 1.9E-12 96.9 13.0 176 236-448 4-180 (375)
132 PRK05122 major facilitator sup 98.7 1.4E-07 3E-12 96.9 14.5 186 229-446 15-200 (399)
133 cd06174 MFS The Major Facilita 98.7 7.9E-08 1.7E-12 95.3 12.3 168 233-440 3-170 (352)
134 TIGR00903 2A0129 major facilit 98.7 5E-08 1.1E-12 100.0 11.0 138 286-448 32-169 (368)
135 KOG2504 Monocarboxylate transp 98.7 1.6E-07 3.4E-12 100.2 14.9 177 229-445 298-476 (509)
136 PRK11652 emrD multidrug resist 98.7 1.3E-07 2.8E-12 97.0 13.5 142 285-450 48-189 (394)
137 PRK10489 enterobactin exporter 98.7 4E-08 8.8E-13 101.7 9.7 184 229-448 17-200 (417)
138 PF03825 Nuc_H_symport: Nucleo 98.7 3.6E-07 7.8E-12 94.8 16.6 185 230-447 208-398 (400)
139 KOG3764 Vesicular amine transp 98.7 3.7E-08 8E-13 99.3 8.5 146 278-447 105-250 (464)
140 TIGR01299 synapt_SV2 synaptic 98.7 1.4E-07 3E-12 104.7 13.3 140 285-447 207-357 (742)
141 TIGR00886 2A0108 nitrite extru 98.7 1.7E-07 3.8E-12 94.5 13.1 148 231-415 3-150 (366)
142 PRK03633 putative MFS family t 98.7 2.2E-07 4.7E-12 95.2 13.9 152 228-417 5-156 (381)
143 PRK12307 putative sialic acid 98.7 3.1E-07 6.8E-12 95.1 14.1 139 285-448 58-196 (426)
144 PRK12382 putative transporter; 98.6 4.2E-07 9E-12 93.2 14.5 187 230-448 16-202 (392)
145 TIGR00712 glpT glycerol-3-phos 98.6 1.7E-07 3.8E-12 97.9 11.7 145 284-447 65-209 (438)
146 PRK11102 bicyclomycin/multidru 98.6 1.5E-07 3.3E-12 95.6 10.8 141 285-449 31-171 (377)
147 PRK10077 xylE D-xylose transpo 98.6 2.7E-07 5.8E-12 97.1 12.4 152 284-448 59-218 (479)
148 TIGR00882 2A0105 oligosacchari 98.6 6.2E-07 1.3E-11 92.2 14.7 185 229-447 2-186 (396)
149 PRK11043 putative transporter; 98.6 4.9E-07 1.1E-11 93.0 13.9 137 285-445 46-182 (401)
150 KOG1330 Sugar transporter/spin 98.6 1.5E-08 3.3E-13 103.9 2.4 82 50-145 134-215 (493)
151 PRK03893 putative sialic acid 98.6 3.9E-07 8.4E-12 96.4 13.1 139 285-448 60-198 (496)
152 PRK15011 sugar efflux transpor 98.6 4.8E-07 1E-11 93.2 13.0 183 229-448 15-198 (393)
153 PRK08633 2-acyl-glycerophospho 98.6 5.6E-07 1.2E-11 105.0 15.1 115 284-417 51-165 (1146)
154 PF05977 MFS_3: Transmembrane 98.6 3E-07 6.5E-12 98.5 11.6 180 229-443 10-189 (524)
155 PRK09528 lacY galactoside perm 98.6 6.1E-07 1.3E-11 93.1 13.4 183 230-446 11-193 (420)
156 TIGR00898 2A0119 cation transp 98.6 2.9E-07 6.3E-12 97.7 10.9 136 284-447 131-266 (505)
157 TIGR00890 2A0111 Oxalate/Forma 98.6 3.9E-07 8.5E-12 91.5 10.9 137 285-446 43-179 (377)
158 PRK10642 proline/glycine betai 98.5 1.5E-06 3.2E-11 92.4 15.4 142 289-447 66-215 (490)
159 TIGR00879 SP MFS transporter, 98.5 6.5E-07 1.4E-11 92.7 12.3 143 284-448 75-220 (481)
160 PRK03699 putative transporter; 98.5 1.7E-06 3.7E-11 89.0 15.1 133 285-441 47-180 (394)
161 PRK09952 shikimate transporter 98.5 1.4E-06 3E-11 91.3 14.5 143 291-448 75-223 (438)
162 PRK09556 uhpT sugar phosphate 98.5 5.2E-07 1.1E-11 95.2 11.4 144 285-445 69-213 (467)
163 PRK10406 alpha-ketoglutarate t 98.5 1.8E-06 4E-11 90.0 14.8 140 292-448 75-222 (432)
164 TIGR00887 2A0109 phosphate:H+ 98.5 5.7E-07 1.2E-11 95.8 10.8 146 285-447 61-227 (502)
165 PRK11273 glpT sn-glycerol-3-ph 98.5 1.3E-06 2.9E-11 91.7 13.3 143 285-447 68-211 (452)
166 PRK06814 acylglycerophosphoeth 98.5 1.3E-06 2.7E-11 102.2 14.5 141 284-448 56-198 (1140)
167 PRK09705 cynX putative cyanate 98.5 1.6E-06 3.5E-11 89.3 13.7 129 284-436 48-176 (393)
168 TIGR00805 oat sodium-independe 98.5 2.4E-06 5.2E-11 93.8 15.1 232 37-325 172-414 (633)
169 TIGR01301 GPH_sucrose GPH fami 98.5 1.1E-06 2.5E-11 92.8 11.9 200 231-449 6-223 (477)
170 TIGR00892 2A0113 monocarboxyla 98.4 1.4E-06 3E-11 91.9 11.9 134 287-445 61-195 (455)
171 PLN00028 nitrate transmembrane 98.4 2.9E-06 6.3E-11 89.9 14.4 136 286-444 77-219 (476)
172 PRK09584 tppB putative tripept 98.4 5.1E-06 1.1E-10 88.7 16.2 111 288-411 324-438 (500)
173 COG2814 AraJ Arabinose efflux 98.4 3.6E-06 7.8E-11 86.2 13.9 137 285-445 53-189 (394)
174 KOG1330 Sugar transporter/spin 98.4 2.3E-07 4.9E-12 95.4 4.7 139 287-448 75-213 (493)
175 TIGR00883 2A0106 metabolite-pr 98.4 3.1E-06 6.7E-11 85.5 12.9 141 293-448 48-194 (394)
176 KOG2816 Predicted transporter 98.4 2.5E-05 5.5E-10 82.3 19.9 259 53-416 128-391 (463)
177 PRK15075 citrate-proton sympor 98.4 6.7E-06 1.4E-10 85.9 14.6 188 233-448 19-215 (434)
178 KOG2533 Permease of the major 98.4 8.4E-06 1.8E-10 86.5 15.4 201 53-322 150-355 (495)
179 TIGR00896 CynX cyanate transpo 98.3 3.4E-06 7.4E-11 85.2 11.2 129 284-436 39-167 (355)
180 PRK15034 nitrate/nitrite trans 98.3 8.5E-06 1.8E-10 85.8 13.9 145 285-448 75-236 (462)
181 TIGR00885 fucP L-fucose:H+ sym 98.3 1.2E-05 2.7E-10 83.5 14.8 112 285-415 43-154 (410)
182 KOG2615 Permease of the major 98.3 2.4E-06 5.2E-11 86.0 8.9 136 288-450 76-219 (451)
183 TIGR00894 2A0114euk Na(+)-depe 98.3 3.6E-06 7.8E-11 88.5 10.2 140 285-446 81-221 (465)
184 TIGR00901 2A0125 AmpG-related 98.3 6E-06 1.3E-10 83.4 11.2 132 297-447 38-181 (356)
185 COG2271 UhpC Sugar phosphate p 98.2 8.1E-06 1.8E-10 83.4 11.0 139 287-449 71-214 (448)
186 KOG0255 Synaptic vesicle trans 98.2 5.7E-06 1.2E-10 88.5 10.1 136 285-448 123-258 (521)
187 KOG3764 Vesicular amine transp 98.2 1.6E-05 3.5E-10 80.6 12.3 264 53-438 175-448 (464)
188 PRK11010 ampG muropeptide tran 98.1 2.2E-05 4.8E-10 83.6 13.0 132 295-448 60-198 (491)
189 PF03092 BT1: BT1 family; Int 98.1 6.4E-05 1.4E-09 78.9 16.2 147 287-446 262-414 (433)
190 KOG2325 Predicted transporter/ 98.1 2.2E-05 4.9E-10 82.3 12.2 98 45-149 138-239 (488)
191 PRK10133 L-fucose transporter; 98.1 3.4E-05 7.4E-10 81.0 13.7 111 285-414 66-176 (438)
192 COG2807 CynX Cyanate permease 98.1 0.00014 3.1E-09 73.1 16.1 262 39-421 101-363 (395)
193 COG0738 FucP Fucose permease [ 98.1 0.00016 3.4E-09 73.7 16.1 274 41-420 108-387 (422)
194 KOG0254 Predicted transporter 98.0 4.5E-05 9.8E-10 81.6 12.8 141 284-448 93-233 (513)
195 KOG4686 Predicted sugar transp 98.0 6.1E-05 1.3E-09 73.3 11.7 185 227-450 262-449 (459)
196 PF06609 TRI12: Fungal trichot 98.0 0.00011 2.3E-09 79.5 14.6 151 229-411 310-461 (599)
197 COG3104 PTR2 Dipeptide/tripept 98.0 3.2E-05 6.9E-10 80.7 10.1 179 226-439 18-201 (498)
198 TIGR00792 gph sugar (Glycoside 98.0 2.1E-05 4.5E-10 81.6 8.8 148 285-448 40-198 (437)
199 PTZ00207 hypothetical protein; 98.0 5.1E-05 1.1E-09 82.2 11.9 130 295-444 76-205 (591)
200 TIGR00889 2A0110 nucleoside tr 98.0 7.8E-05 1.7E-09 77.7 12.9 171 232-447 5-182 (418)
201 PRK11902 ampG muropeptide tran 97.9 5.7E-05 1.2E-09 77.9 11.1 133 294-448 46-185 (402)
202 PRK11128 putative 3-phenylprop 97.9 0.00019 4E-09 73.6 13.0 134 285-447 44-181 (382)
203 TIGR00806 rfc RFC reduced fola 97.8 0.00014 3.1E-09 76.2 12.0 133 288-445 70-203 (511)
204 TIGR00805 oat sodium-independe 97.8 5.1E-05 1.1E-09 83.4 8.8 159 287-449 75-285 (633)
205 TIGR00902 2A0127 phenyl propri 97.8 0.00027 5.8E-09 72.5 13.1 157 232-432 7-167 (382)
206 KOG0569 Permease of the major 97.6 0.00092 2E-08 70.6 13.7 142 286-449 66-209 (485)
207 PF06609 TRI12: Fungal trichot 97.6 0.00032 6.8E-09 76.0 10.3 139 284-447 82-221 (599)
208 PF13347 MFS_2: MFS/sugar tran 97.6 0.00014 2.9E-09 75.9 6.9 149 285-446 42-200 (428)
209 TIGR02718 sider_RhtX_FptX side 97.5 0.00067 1.5E-08 69.5 11.6 148 280-447 37-187 (390)
210 PF00083 Sugar_tr: Sugar (and 97.5 4.6E-06 9.9E-11 87.1 -5.5 141 287-447 53-194 (451)
211 PRK15462 dipeptide/tripeptide 97.5 0.0048 1E-07 65.8 16.8 114 287-413 315-436 (493)
212 TIGR00806 rfc RFC reduced fola 97.4 0.0026 5.6E-08 67.0 14.2 270 57-410 134-408 (511)
213 KOG2563 Permease of the major 97.4 0.0029 6.2E-08 65.5 14.0 134 292-443 313-449 (480)
214 KOG2816 Predicted transporter 97.4 0.0014 3.1E-08 69.1 12.0 138 290-454 72-209 (463)
215 COG2223 NarK Nitrate/nitrite t 97.3 0.0026 5.7E-08 65.2 12.7 138 235-411 23-163 (417)
216 KOG3626 Organic anion transpor 97.3 0.0024 5.3E-08 70.1 13.0 111 30-143 230-346 (735)
217 PRK09669 putative symporter Ya 97.3 0.00064 1.4E-08 71.2 8.2 147 285-446 50-206 (444)
218 TIGR00880 2_A_01_02 Multidrug 97.3 0.0006 1.3E-08 57.8 6.6 82 45-141 59-140 (141)
219 PRK11462 putative transporter; 97.3 0.0017 3.6E-08 68.7 11.3 119 285-419 50-174 (460)
220 PRK10429 melibiose:sodium symp 97.3 0.00088 1.9E-08 70.9 9.2 147 285-447 47-204 (473)
221 PF03825 Nuc_H_symport: Nucleo 97.3 0.0028 6.2E-08 65.8 12.7 176 232-448 5-183 (400)
222 KOG2532 Permease of the major 97.3 0.0016 3.4E-08 68.9 10.9 135 288-444 81-216 (466)
223 PTZ00207 hypothetical protein; 97.2 0.0087 1.9E-07 65.1 15.8 83 355-444 454-552 (591)
224 KOG2533 Permease of the major 97.0 0.0053 1.2E-07 65.4 11.8 142 286-449 87-232 (495)
225 COG2807 CynX Cyanate permease 97.0 0.0073 1.6E-07 61.0 11.4 123 292-439 59-181 (395)
226 COG0738 FucP Fucose permease [ 97.0 0.0081 1.8E-07 61.5 11.8 106 292-416 60-165 (422)
227 PF05978 UNC-93: Ion channel r 96.9 0.0047 1E-07 55.5 8.6 105 282-409 39-143 (156)
228 KOG2504 Monocarboxylate transp 96.9 0.0028 6.1E-08 67.9 8.2 134 287-445 88-222 (509)
229 COG2211 MelB Na+/melibiose sym 96.8 0.0077 1.7E-07 63.3 10.3 143 286-444 54-207 (467)
230 PF05631 DUF791: Protein of un 96.8 0.019 4.1E-07 58.1 12.5 137 291-450 80-222 (354)
231 PF01306 LacY_symp: LacY proto 96.7 0.0056 1.2E-07 63.5 8.4 178 229-443 7-187 (412)
232 PRK09848 glucuronide transport 96.7 0.011 2.3E-07 62.0 10.7 100 285-398 49-153 (448)
233 KOG0252 Inorganic phosphate tr 96.6 0.0045 9.8E-08 64.3 6.6 142 292-449 96-250 (538)
234 PF03137 OATP: Organic Anion T 96.4 0.00082 1.8E-08 72.5 -0.2 107 34-142 138-252 (539)
235 PF01770 Folate_carrier: Reduc 96.4 0.24 5.3E-06 51.4 17.8 280 53-410 109-395 (412)
236 TIGR00788 fbt folate/biopterin 96.2 0.037 7.9E-07 58.7 11.3 90 356-448 123-212 (468)
237 PF03092 BT1: BT1 family; Int 95.3 0.067 1.5E-06 56.2 8.8 132 297-446 41-177 (433)
238 PF11700 ATG22: Vacuole efflux 95.1 0.29 6.2E-06 52.1 12.8 147 285-449 75-252 (477)
239 PF03209 PUCC: PUCC protein; 94.7 0.29 6.3E-06 50.5 10.9 116 297-418 31-152 (403)
240 KOG0253 Synaptic vesicle trans 93.7 0.12 2.7E-06 52.6 5.8 128 293-447 126-253 (528)
241 KOG2563 Permease of the major 93.6 0.65 1.4E-05 48.5 10.9 128 238-397 57-184 (480)
242 COG0477 ProP Permeases of the 93.4 0.23 5E-06 46.7 6.9 113 285-416 44-157 (338)
243 KOG2325 Predicted transporter/ 93.2 0.57 1.2E-05 49.7 10.1 143 285-446 76-231 (488)
244 PF13000 Acatn: Acetyl-coenzym 93.0 13 0.00029 39.6 19.6 48 43-94 124-171 (544)
245 COG2270 Permeases of the major 92.6 1.1 2.3E-05 46.6 10.8 146 286-448 64-224 (438)
246 KOG3762 Predicted transporter 92.5 0.2 4.2E-06 53.4 5.4 117 300-440 426-543 (618)
247 PF12832 MFS_1_like: MFS_1 lik 92.3 0.66 1.4E-05 36.4 6.9 68 235-318 6-73 (77)
248 PF06813 Nodulin-like: Nodulin 91.2 2.3 5E-05 41.3 10.9 104 296-415 52-155 (250)
249 TIGR00939 2a57 Equilibrative N 91.2 1.8 3.9E-05 45.5 11.0 114 284-409 49-162 (437)
250 TIGR00769 AAA ADP/ATP carrier 89.7 9.7 0.00021 40.5 14.9 50 44-93 135-185 (472)
251 TIGR00926 2A1704 Peptide:H+ sy 89.5 3.1 6.7E-05 46.1 11.5 139 289-439 32-177 (654)
252 KOG3574 Acetyl-CoA transporter 88.8 6.5 0.00014 40.6 12.0 52 40-95 136-187 (510)
253 KOG3810 Micronutrient transpor 88.7 11 0.00024 38.5 13.4 83 353-440 326-417 (433)
254 PF02487 CLN3: CLN3 protein; 88.5 8.8 0.00019 39.9 13.2 57 353-411 335-391 (402)
255 PF01770 Folate_carrier: Reduc 87.4 11 0.00023 39.4 13.0 138 293-454 54-191 (412)
256 PF06963 FPN1: Ferroportin1 (F 84.0 18 0.00038 38.1 12.9 104 289-409 302-410 (432)
257 TIGR01272 gluP glucose/galacto 82.6 1.7 3.6E-05 43.4 4.5 95 353-449 10-119 (310)
258 TIGR00926 2A1704 Peptide:H+ sy 80.9 54 0.0012 36.5 15.8 94 34-137 82-180 (654)
259 KOG3098 Uncharacterized conser 80.7 82 0.0018 33.4 20.4 100 301-409 303-406 (461)
260 PF00854 PTR2: POT family; In 78.6 4.7 0.0001 41.0 6.3 89 33-136 29-120 (372)
261 PF03219 TLC: TLC ATP/ADP tran 74.9 63 0.0014 34.6 13.7 44 47-90 153-197 (491)
262 PF00854 PTR2: POT family; In 72.4 9.8 0.00021 38.7 6.7 117 311-440 2-119 (372)
263 COG3104 PTR2 Dipeptide/tripept 71.6 18 0.00039 38.5 8.4 144 288-445 332-488 (498)
264 KOG3098 Uncharacterized conser 70.1 23 0.00049 37.6 8.8 101 285-409 55-156 (461)
265 KOG1479 Nucleoside transporter 69.8 29 0.00062 36.1 9.3 95 34-144 114-208 (406)
266 PRK03612 spermidine synthase; 68.7 66 0.0014 34.7 12.3 73 360-438 117-191 (521)
267 PF06963 FPN1: Ferroportin1 (F 65.5 1.7E+02 0.0037 30.8 14.3 75 230-320 3-78 (432)
268 KOG4686 Predicted sugar transp 64.0 27 0.00058 34.9 7.3 54 42-95 357-410 (459)
269 TIGR00769 AAA ADP/ATP carrier 57.2 51 0.0011 35.1 8.7 118 293-415 57-189 (472)
270 PF03137 OATP: Organic Anion T 55.6 3.7 8.1E-05 44.4 -0.1 150 287-440 45-246 (539)
271 PF06645 SPC12: Microsomal sig 53.9 21 0.00045 27.9 3.9 54 70-144 5-58 (76)
272 KOG3762 Predicted transporter 50.2 59 0.0013 35.3 7.6 43 53-95 475-518 (618)
273 PF07672 MFS_Mycoplasma: Mycop 47.8 1.4E+02 0.003 29.3 9.2 25 114-138 37-61 (267)
274 KOG4112 Signal peptidase subun 41.8 37 0.00081 27.5 3.6 25 71-95 21-45 (101)
275 PF06813 Nodulin-like: Nodulin 40.3 65 0.0014 31.2 5.8 72 57-145 116-187 (250)
276 KOG3626 Organic anion transpor 36.3 71 0.0015 35.9 6.0 95 355-452 239-350 (735)
277 PF05631 DUF791: Protein of un 35.8 5E+02 0.011 26.6 12.8 25 118-142 195-219 (354)
278 PRK10692 hypothetical protein; 34.9 65 0.0014 25.8 3.9 60 309-378 3-63 (92)
279 KOG4332 Predicted sugar transp 34.6 35 0.00076 33.8 2.9 138 292-450 84-226 (454)
280 PF02487 CLN3: CLN3 protein; 30.3 1.8E+02 0.0039 30.4 7.5 41 288-329 67-108 (402)
281 PF08229 SHR3_chaperone: ER me 28.3 4.2E+02 0.009 24.8 8.7 29 118-146 8-36 (196)
282 KOG4332 Predicted sugar transp 27.8 6E+02 0.013 25.5 10.0 72 361-441 356-428 (454)
283 KOG0637 Sucrose transporter an 24.5 1.2E+02 0.0025 32.4 4.8 156 230-410 33-198 (498)
284 PF10762 DUF2583: Protein of u 24.4 1E+02 0.0023 24.5 3.4 56 309-374 3-59 (89)
285 TIGR00986 3a0801s05tom22 mitoc 23.5 1.9E+02 0.0041 25.6 5.2 29 60-88 56-84 (145)
286 PF06779 DUF1228: Protein of u 22.8 4E+02 0.0086 21.3 6.7 44 288-331 35-78 (85)
287 PF06570 DUF1129: Protein of u 22.5 6.2E+02 0.014 23.4 9.6 23 232-254 79-101 (206)
288 PF01733 Nucleoside_tran: Nucl 20.8 24 0.00053 35.0 -0.9 304 41-411 1-304 (309)
289 PF02990 EMP70: Endomembrane p 20.4 7.3E+02 0.016 26.7 10.2 26 284-309 301-326 (521)
No 1
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=100.00 E-value=1.6e-59 Score=490.83 Aligned_cols=388 Identities=46% Similarity=0.887 Sum_probs=322.4
Q ss_pred eeehhHhhchhhHHhhhcCCcccccccCCCccchhHHHHHHHHHHhhcccccchhHHHHHhcCCCccch--hhHHHHHHH
Q 012601 3 SVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQR--NSANAIFCS 80 (460)
Q Consensus 3 ~i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr--~~a~~~~~~ 80 (460)
++++++++++++++..++|+.+ +..+++.++.++++++++|++.|++|.|.||+++|++|++|| +++++++++
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~-----~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLD-----KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred HHHHHHHHhCchhhhhcccccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 3456677777777777766532 234566777788899999999999999999999999999876 589999999
Q ss_pred HHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCC
Q 012601 81 WMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLD 160 (460)
Q Consensus 81 ~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~ 160 (460)
+.++|+++||++|++++|.+.+++.++++++..+.++|.+|+++++.++++++++++++||+|+.++++.++++
T Consensus 160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~------ 233 (477)
T TIGR01301 160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE------ 233 (477)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh------
Confidence 99999999999999855666777776777788888999999999999999999999999999864322110000
Q ss_pred CccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHH
Q 012601 161 DPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL 240 (460)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~ 240 (460)
.+ ..+ +.+....++++++++++|||++|++|++|||
T Consensus 234 ---------~~-----------------------------~~~------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqff 269 (477)
T TIGR01301 234 ---------AA-----------------------------PPS------KHGEEAFFGELFGAFKYLPRPVWILLLVTCL 269 (477)
T ss_pred ---------cc-----------------------------ccc------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 00 000 0012356899999999999999999999999
Q ss_pred HHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC-chhHHHHHHHH
Q 012601 241 TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG-SRLVWAISNFI 319 (460)
Q Consensus 241 ~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG-~r~l~~~g~~~ 319 (460)
+|+||+++++|.|||+++++|+++|++ .+.|++|+|.|+|+++++++++.++|++++++.||+| ||++|.+|+++
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~----~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~ 345 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQ----GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNII 345 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999999999999999999999997653 4589999999999999999999999999999999998 58999999999
Q ss_pred HHHHHHHHHHhhhhcccc-ccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHH
Q 012601 320 VFACMATTAIISVISVRE-YSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNL 398 (460)
Q Consensus 320 ~ai~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~ 398 (460)
.++|++.+.++..+..+. ........++|+...++.++++++++|++|++++|+||+|++++++++++++|.|||++|+
T Consensus 346 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~ 425 (477)
T TIGR01301 346 LAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNL 425 (477)
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHH
Confidence 999999998877432110 0000111233444457889999999999999999999999999999766889999999999
Q ss_pred HHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCC
Q 012601 399 AIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (460)
Q Consensus 399 ~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~ 449 (460)
++++||+++++..|++.+..|+++.++|.++|++++++++++++.+|+++.
T Consensus 426 ~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 426 AIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999888898877889999999999999999999999875
No 2
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-53 Score=422.59 Aligned_cols=379 Identities=44% Similarity=0.823 Sum_probs=300.2
Q ss_pred CeeeehhHhhchhhHHhhhcCCcccccccCCCccchhHHHHHHHHHHhhcccccchhHHHHHhcCCCccchhh-HHHHHH
Q 012601 1 MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNS-ANAIFC 79 (460)
Q Consensus 1 ~~~i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~-a~~~~~ 79 (460)
+++++|.+++|+.||+..++|+.. ...|+++++++++|+|++|++.|.+|.|+|||+.|.+.+++|.+ ||++++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~-----~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~ 185 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNER-----KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS 185 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcc-----cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence 467899999999999999999863 23789999999999999999999999999999999999888777 999999
Q ss_pred HHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCC
Q 012601 80 SWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLL 159 (460)
Q Consensus 80 ~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l 159 (460)
+|+++|+++||.+|+..+|.+.++++.+.++...+..+|..|...+.+..+.....++...|+|..+.....
T Consensus 186 ~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~-------- 257 (498)
T KOG0637|consen 186 FFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTA-------- 257 (498)
T ss_pred HHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccc--------
Confidence 999999999999998778888888877777777777788777777777766666665555555543321000
Q ss_pred CCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHH
Q 012601 160 DDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMA 239 (460)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f 239 (460)
+. .. ....-+.+++.++++||+++|++|+++.
T Consensus 258 ----------------------------------~~------~~--------~~~~~~~e~fG~~~~mpr~m~~L~i~~l 289 (498)
T KOG0637|consen 258 ----------------------------------RS------KS--------SKLPFLLEIFGALKVMPRPMRMLLIVTL 289 (498)
T ss_pred ----------------------------------cc------cc--------cCcchHHHHhchHhhCChhHHHHHHHHH
Confidence 00 00 0111234667788999999999999999
Q ss_pred HHHHhhhhhhhhccccccceeecCCCCCCC--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC-chhHHHHH
Q 012601 240 LTWLSWFPFFLFDTDWMGREVYHGDPKGND--HEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG-SRLVWAIS 316 (460)
Q Consensus 240 ~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~--~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG-~r~l~~~g 316 (460)
+.|++|+++++|+||||||++|+|||++++ ++.+.||+||++|||||++|+++..++|+.++++.||+| ||+.|...
T Consensus 290 ltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~ 369 (498)
T KOG0637|consen 290 LTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGV 369 (498)
T ss_pred HHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehh
Confidence 999999999999999999999999999854 788899999999999999999999999999999999999 55555444
Q ss_pred H-HHHHHHHHHHHHhhhhccccccC-ccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchh
Q 012601 317 N-FIVFACMATTAIISVISVREYSG-GIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIG 394 (460)
Q Consensus 317 ~-~~~ai~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~G 394 (460)
. +..++++.++.....+..+.... .+... ++....+.++..+...|+.++++.|+||++-+....++++++|+++|
T Consensus 370 ~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~--~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~g 447 (498)
T KOG0637|consen 370 NAFGLATGLAGLVLNTYVVLSHRSTAGILSS--PLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLG 447 (498)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhcceeec--chhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceee
Confidence 4 45555554444322211000000 00000 11234577888899999999999999999999888777889999999
Q ss_pred hhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012601 395 VLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 395 i~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
++|+++++||+++++..|++++++|+.+..+|..+++..+++.+..+.
T Consensus 448 vln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~i~al~ 495 (498)
T KOG0637|consen 448 VLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGGIVALL 495 (498)
T ss_pred eeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHHHHheE
Confidence 999999999999999999999999988876777777777766665543
No 3
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.2e-23 Score=218.92 Aligned_cols=340 Identities=16% Similarity=0.168 Sum_probs=233.7
Q ss_pred HHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHH
Q 012601 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (460)
Q Consensus 42 ~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f 121 (460)
+|=.++..+.....+..+.|+.|.+|++.||......++...+|.++|..+|. ++++ ++ ...|.+.+
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l----~~il---Gt------~~~W~~l~ 187 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL----PSLL---GT------EDLWPYLL 187 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc----HHhc---CC------CcchHHHH
Confidence 45566777778888899999999999999999999999999999999987773 2332 22 24699999
Q ss_pred HHHHHHHHHHhhheeEEeeccCCCCCC-CCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcc
Q 012601 122 LVAVVFLTLCALVTIYFADEVPLTVNQ-PNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISK 200 (460)
Q Consensus 122 ~i~~i~~~i~~~itl~~v~E~p~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (460)
.+..++.++.++ .+.++||+|.+... ++++++|++ .++..++++. .++ +.++.+.+
T Consensus 188 ~~~~i~~~~~l~-~l~~~PESPk~Ll~~k~~~~~A~~--------sl~~y~G~~~---------~~~---~~e~~~~e-- 244 (485)
T KOG0569|consen 188 AFPLIPALLQLA-LLPFLPESPKYLLIKKGDEEEARK--------ALKFYRGKED---------VEA---EIEEMLRE-- 244 (485)
T ss_pred HHHHHHHHHHHH-HHhcCCCCcchHHHHcCCHHHHHH--------HHHHHhCCCc---------chh---HHHHHHHH--
Confidence 999999976665 57889999998755 444333321 2223222210 001 11111100
Q ss_pred cccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHH-HHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHH
Q 012601 201 KAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALT-WLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGV 279 (460)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~-w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv 279 (460)
..+ ++.++.+..++++++++ +++.+++...+.+++.+ ..|.++..+|.|+++.+..+..+ +
T Consensus 245 ~~~---~~~~~~~~~sl~~~~~~-~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~------------~-- 306 (485)
T KOG0569|consen 245 IEE---EELEKKKQISLRQLLKN-PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE------------E-- 306 (485)
T ss_pred HHH---hccccccCCcHHHHhcC-cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH------------H--
Confidence 001 00011134578888876 34556666666666665 66799999999998776554321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 280 REGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 280 ~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
..++...-++++.+++++.++++||+|||++++++..+++++.+.+.+..... +. ... +-.+..++.
T Consensus 307 --a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~-~~----~~~------~~~y~~i~~ 373 (485)
T KOG0569|consen 307 --AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS-NS----FGS------WLSYLCIAA 373 (485)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH-HH----hhh------HHHHHHHHH
Confidence 12455666778999999999999999999999999998888776554433221 10 000 011222222
Q ss_pred HHHhhhhhhh-hcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHH
Q 012601 360 FTLLGFPLAI-TYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (460)
Q Consensus 360 ~~~~Gi~~a~-~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~ 438 (460)
..++.+.++. ...+||-+.+|..|++ .+...+++.....|+.++++...+.++-+..|. ..|+.+.+.+.+.++
T Consensus 374 ~~~~~~~f~~G~gpi~~fi~aELf~~~--~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~---~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 374 IFLFIISFAIGPGPIPWFIGAELFPQS--ARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP---YVFILFVIPLAIFLI 448 (485)
T ss_pred HHHHHHhhhcCCCchhHHHHHHhCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHH
Confidence 2223333332 2467777999999985 458888999999999999999999999999985 378888999999999
Q ss_pred HhhhccCCCCCCCcc
Q 012601 439 VATLKLPHLSSNSFR 453 (460)
Q Consensus 439 ~~~~~vpe~~~~~~~ 453 (460)
+.++.+||||||++.
T Consensus 449 ~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 449 YLYRYLPETKGRTPY 463 (485)
T ss_pred HHHHhCcccCCCCHH
Confidence 999999999999974
No 4
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.86 E-value=8.4e-21 Score=197.65 Aligned_cols=304 Identities=20% Similarity=0.251 Sum_probs=222.7
Q ss_pred hchhhHHhhhcCCcccccccCCCccchhHH---------------------------HHHHHHHHhhcccccchhHHHHH
Q 012601 10 GFSADIGYILGDTKEHCSKFRGTRTRAAFV---------------------------FVIGFWLLDLANNTVQGPARALL 62 (460)
Q Consensus 10 ~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~---------------------------~v~~~~lld~a~n~~~~p~rA~i 62 (460)
++.+++-..++|++ ++|++|||||.++. ..+..++.|++.+..+.|.+|++
T Consensus 51 ai~dp~~G~~sDr~--~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~ 128 (428)
T PF13347_consen 51 AITDPLIGYLSDRT--RTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALI 128 (428)
T ss_pred hhcCCcEEEEEeee--cccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcC
Confidence 45556666678988 69999999997641 12444568999999999999999
Q ss_pred hcCCC-ccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeec
Q 012601 63 ADLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADE 141 (460)
Q Consensus 63 ~D~~p-~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E 141 (460)
+|+++ ++||.+.+++.+.+..+|.++...+.... ++ .+ ++.. ...+|+.+..+.+++.+++..++++.+||
T Consensus 129 ~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l-~~-~~---g~~~---~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 129 PELTPDPDERTRLSSWRMIFSMIGSLLASFLAPIL-VS-WF---GGGD---TSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhh-hh-hh---ccCc---cchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 99998 58999999999999999997666555431 21 11 1110 01269999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHH
Q 012601 142 VPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLL 221 (460)
Q Consensus 142 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (460)
++....+++ ++.++++.+
T Consensus 201 ~~~~~~~~~--------------------------------------------------------------~~~~~~~~~ 218 (428)
T PF13347_consen 201 RSVEVTEQE--------------------------------------------------------------KKISLRDSL 218 (428)
T ss_pred ccccccccc--------------------------------------------------------------cccccccch
Confidence 221111100 111223334
Q ss_pred HHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012601 222 TSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIE 301 (460)
Q Consensus 222 ~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~ 301 (460)
+++.+. |++++++...++.|+++.....+...|..+ +.+.+ . ..+ ..+....+.+++.+.+.+
T Consensus 219 ~~~~~n-r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~-vl~~~-~-------------~~~-~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 219 RSLFRN-RPFRILLLAFFLQWLAFALMNTFLPYYFTY-VLGNE-G-------------LIS-IFMLIFFVASIVGSPLWG 281 (428)
T ss_pred hhhccc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HhcCc-h-------------hhH-HHHHHHHHHHHHHHHHHH
Confidence 443333 567788888888888877665555444432 22221 0 111 233456777888899999
Q ss_pred HHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhcc
Q 012601 302 PMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAEL 381 (460)
Q Consensus 302 ~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~ 381 (460)
++.||+|+|+++..+.++.+++++.+.+... + +.+..++...+.|++++..+.+|+++++|.
T Consensus 282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~ 343 (428)
T PF13347_consen 282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---G---------------SPWLVLILFILAGIGYGAFFVIPWAMLADV 343 (428)
T ss_pred HHHHHccceeehhhhHHHHHHHHHHHHHHHh---h---------------hHHHHHHHHHHhHhhhcccccccccccccc
Confidence 9999999999999999999998887776652 1 267788888999999999999999999999
Q ss_pred ccCC-----CCCcccchhhhHHHHHHHHHHHhhccccceecccC
Q 012601 382 TADS-----GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 382 ~~~~-----~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
.+.+ +|+.|..+|+.+++.-++|.+++.+.|.+++..|.
T Consensus 344 id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 344 IDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 8742 36689999999999999999999999988776653
No 5
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.83 E-value=3.3e-19 Score=185.11 Aligned_cols=336 Identities=14% Similarity=0.095 Sum_probs=218.6
Q ss_pred hHhhchhhHHhhhcCCcccccccCCCccchhHHH---HHHH----------------------HHHhhcccccchhHHHH
Q 012601 7 IIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVF---VIGF----------------------WLLDLANNTVQGPARAL 61 (460)
Q Consensus 7 l~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~---v~~~----------------------~lld~a~n~~~~p~rA~ 61 (460)
+.-+.++++...++|++ .+|+++||||.+... .++. .+++.+....+.|..|+
T Consensus 46 i~~~i~~p~~G~lsDr~--~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 123 (437)
T TIGR00792 46 ILDAITDPIMGNIVDRT--RTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSL 123 (437)
T ss_pred HHHHhccchheEeeecC--CCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhC
Confidence 34466677777889987 578899999876421 1111 12344444556688999
Q ss_pred HhcCCC-ccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEee
Q 012601 62 LADLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFAD 140 (460)
Q Consensus 62 i~D~~p-~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~ 140 (460)
.+|.++ +++|++++++.+....+|+.++..+... +...+ .+. .....||.++.+.+++.+++..+..+.+|
T Consensus 124 ~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~--l~~~~---~~~---~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 124 VPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP--LVSYF---GGG---DDKFGWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh---CCC---cccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 999985 6899999999999999988877655432 11111 000 00236999999988888778777778888
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHH
Q 012601 141 EVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNL 220 (460)
Q Consensus 141 E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (460)
|++....++++ ++.++++.
T Consensus 196 e~~~~~~~~~~-------------------------------------------------------------~~~~~~~~ 214 (437)
T TIGR00792 196 ERYSEIPKNIE-------------------------------------------------------------KKLSLKQI 214 (437)
T ss_pred ecCCCCCcccc-------------------------------------------------------------cCCCHHHH
Confidence 87521000000 00112333
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012601 221 LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (460)
Q Consensus 221 ~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~ 300 (460)
++.+.+ .|+++.+++..++.+.+++.+..+.+.|.. ..++ ++. ..+ +.+.+..+..++.+.+.
T Consensus 215 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-------------~~~-~~~~~~~i~~ii~~~~~ 277 (437)
T TIGR00792 215 FKALFK-NDQLLILCLAYLFYNLAFNIKNGVQVYYFT-YVLG-DPE-------------LFS-YMGSIAIVAGLIGVLLF 277 (437)
T ss_pred HHHHhC-CHHHHHHHHHHHHHHHHHHHHcchhheeEe-eecC-ChH-------------HHH-HHHHHHHHHHHHHHHHH
Confidence 333322 256677788888888887765554444443 2332 210 111 23344567788889999
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhc
Q 012601 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (460)
Q Consensus 301 ~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~ 380 (460)
+++.||+|+|+++.++..+.+++++...+.. + +.+...+.+.+.|++++..+.+++++++|
T Consensus 278 ~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (437)
T TIGR00792 278 PRLVKKFGRKILFAGGILLMVLGYLIFFFAG----S---------------NLPLILVLIILAGFGQNFVTGLVWALVAD 338 (437)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc----h---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888887766554432 1 13445566677899999999999999998
Q ss_pred cccC-----CCCCcccchhhhHHHHHHHHHHHhhccccceecccCcc-------------chhHhHHHHHHHHHHHHhhh
Q 012601 381 LTAD-----SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-------------IPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 381 ~~~~-----~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~-------------~~~f~~~~v~~lia~~~~~~ 442 (460)
..+. ..|..|...|+.|.+..+++.+.+.+.|.+.+..|... .......+++.+++.++.++
T Consensus 339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 418 (437)
T TIGR00792 339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALFLLLAAIIIGR 418 (437)
T ss_pred hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8752 13567999999999999999999999998877655321 01244445556666665543
Q ss_pred ccCCCCC
Q 012601 443 KLPHLSS 449 (460)
Q Consensus 443 ~vpe~~~ 449 (460)
..|.++.
T Consensus 419 ~y~l~~~ 425 (437)
T TIGR00792 419 FYKLTEK 425 (437)
T ss_pred HeeCcHH
Confidence 5666543
No 6
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.80 E-value=1.6e-18 Score=184.33 Aligned_cols=353 Identities=12% Similarity=0.017 Sum_probs=193.3
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccch------hh---cccc
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRA------CC---AACG 115 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~------~~---~~~~ 115 (460)
.+..++......+..+|++|.+|+++|+++.++.+.+..+|.++|..++.... ..+...+.... ++ ....
T Consensus 123 ~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (502)
T TIGR00887 123 FWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL-AGFKHSLEAAADEASCTGSCVPAVDY 201 (502)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccccccccccccccccchhcc
Confidence 34556667777889999999999999999999999999999999988775310 00000000000 00 0112
Q ss_pred chhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCC-CCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchh
Q 012601 116 NLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHL-TDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDAN 194 (460)
Q Consensus 116 ~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (460)
.||.+|.+.+++.++..+ ..+.+||+|++...++++ +++++. +.+...+.. ++..++.++
T Consensus 202 ~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~--------~~~~~~~~~----------~~~~~~~~~ 262 (502)
T TIGR00887 202 MWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASD--------MSAVLQVKI----------EAEPDEVEK 262 (502)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHH--------HHHHhcccc----------ccCcccccc
Confidence 699999999998876554 467899999986443331 111110 111100000 000000000
Q ss_pred hhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHH---HHHHHHHHHhhhhhhhhccccccceeecCCCCCCChh
Q 012601 195 LKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVV---LIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHE 271 (460)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l---~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~ 271 (460)
.+ .+ + +..+.+++++++.. +.++..++. +...+..-+.++....|.+.++.+..+ ++....
T Consensus 263 ~~-----~~---~---~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~--~~~~~~-- 326 (502)
T TIGR00887 263 AS-----TA---V---EVPKASWSDFFTHF-FKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGY--SPPAAT-- 326 (502)
T ss_pred hh-----cc---c---cchhhhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcC--CCCccc--
Confidence 00 00 0 00112455655431 111222221 222232223333444455565544222 221100
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcch
Q 012601 272 VKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQA 351 (460)
Q Consensus 272 ~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (460)
...|++-.........+..+...+..++.++++||+|||++++++.++.++++..+.+......+ +
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~------------~-- 392 (502)
T TIGR00887 327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST------------H-- 392 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch------------h--
Confidence 00111111111111223334455567888999999999999999888888777655543210000 0
Q ss_pred hHHHHHHHH-HHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccC--------cc
Q 012601 352 IKVASLVVF-TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG--------GN 422 (460)
Q Consensus 352 ~~~~~~~~~-~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~--------~~ 422 (460)
......+++ ...+.++. .+++.+.+|++|.+ .+|+.+|+.|...+++.++++.+.|.+.+..+. ..
T Consensus 393 ~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~p~~--~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 467 (502)
T TIGR00887 393 GFLAIYVLAQFFANFGPN---ATTFIVPGEVFPTR--YRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM 467 (502)
T ss_pred HHHHHHHHHHHHHhcCCC---chhhhhhhccCchh--HHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccc
Confidence 011111111 11233333 35566789999974 568888999999999999999999988774321 11
Q ss_pred chhHhHHHHHHHHHHHHhhhccCCCCCCCcc
Q 012601 423 IPAFVLASLSALAGGVVATLKLPHLSSNSFR 453 (460)
Q Consensus 423 ~~~f~~~~v~~lia~~~~~~~vpe~~~~~~~ 453 (460)
...|.+.++++++++++. +++||||||+..
T Consensus 468 ~~~~~i~~~~~~~~~i~~-~~lpEt~~~~le 497 (502)
T TIGR00887 468 GHVLEIFALFMFLGILFT-LLIPETKGKSLE 497 (502)
T ss_pred hHHHHHHHHHHHHHHHHh-eEeccCCCCCHH
Confidence 236777888888877754 678999999865
No 7
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.79 E-value=6.9e-19 Score=187.77 Aligned_cols=343 Identities=13% Similarity=0.127 Sum_probs=219.0
Q ss_pred HHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHH
Q 012601 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (460)
Q Consensus 42 ~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f 121 (460)
+|=++..++....+...+.|++|++|++.|+...+..+.+..+|..+||.++... .+. + .+||.++
T Consensus 147 ~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~--~~~-~-----------~~Wr~~~ 212 (513)
T KOG0254|consen 147 VGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT--SKV-Y-----------AGWRIPL 212 (513)
T ss_pred HHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--ccC-C-----------ccHHHHH
Confidence 3445666777777889999999999999999999999999999999999999762 111 0 2699999
Q ss_pred HHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccc
Q 012601 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 201 (460)
Q Consensus 122 ~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (460)
.+..++.++..+. ++++||+|++..++++.++++. .+.++++-. ..+. .++.+..+.. ..
T Consensus 213 ~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~--------~l~~l~g~~---------~~~~-~~~~~~~~~~-~~ 272 (513)
T KOG0254|consen 213 GLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKR--------SLKRLRGLS---------PEDV-EVELELLKIK-LL 272 (513)
T ss_pred HHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHH--------HHHHHhCCC---------Ccch-HHHHHHHHHH-HH
Confidence 9999999877776 9999999998877554322211 111112100 0000 0011111100 00
Q ss_pred ccccCCCCCCCchhhHHHHHHHhccCCHHHHH-HHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHH
Q 012601 202 AEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHV-VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVR 280 (460)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~-l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~ 280 (460)
.+.. . ...+..++++++ +.+++.... +++..|.++.|++..++|.++.+....+..+ .
T Consensus 273 ~~~~-~---~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~-------------~-- 331 (513)
T KOG0254|consen 273 VEAE-V---AEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD-------------T-- 331 (513)
T ss_pred Hhhh-c---ccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc-------------h--
Confidence 0000 0 001111233333 234444433 4555677788999999999987765433322 0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHH
Q 012601 281 EGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (460)
Q Consensus 281 ~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (460)
.+...+.+++.++.+++...++||+|||++++.|...+++++++++........ +....... .+.......+..
T Consensus 332 --~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~v 405 (513)
T KOG0254|consen 332 --FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALY--YPNSSKGA--GWLAIVFLCLFI 405 (513)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhcc--CCCcccch--hHHHHHHHHHHH
Confidence 234556667778888888999999999999999999999999877765533111 00001111 111223333344
Q ss_pred HHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc-CccchhHhHHHHHHHHHHH-
Q 012601 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-GGNIPAFVLASLSALAGGV- 438 (460)
Q Consensus 361 ~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g-~~~~~~f~~~~v~~lia~~- 438 (460)
..+.++++ .+|+.+.+|..|.+ -+++..++-....++.+.++...+..+.+..+ + ..|...+..+.++.+
T Consensus 406 ~~f~~g~g---~v~w~~~sEifp~~--~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~---~~f~~f~~~~~~~~~~ 477 (513)
T KOG0254|consen 406 FSFAIGWG---PVPWVIVSEIFPLR--LRSKGASLAVAVNWLWNFLISFFFPFITEALGIG---GTFGYFGGICLLSLII 477 (513)
T ss_pred HHHhcccc---cchhhhhhccCcHh--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHH
Confidence 45566666 55556999999984 45777799999999999999887766665544 2 245555555555555
Q ss_pred HhhhccCCCCCCCcc
Q 012601 439 VATLKLPHLSSNSFR 453 (460)
Q Consensus 439 ~~~~~vpe~~~~~~~ 453 (460)
++.+++||||||+..
T Consensus 478 fv~~~~pETkg~sle 492 (513)
T KOG0254|consen 478 FVFFFVPETKGLTLE 492 (513)
T ss_pred HheEEcccCCCCcHH
Confidence 888999999999975
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.76 E-value=1.2e-18 Score=191.72 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
.++.++..++..++.++++||+|||++++++.++.+++++++.+... ....+++..++|+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s--------------------~~~ll~~~~l~g~ 660 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS--------------------ESAMIALLCLFGG 660 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc--------------------HHHHHHHHHHHHH
Confidence 44566777888999999999999999999999888888776665431 2223333445566
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
..+....+.+++++|.+|.+ .+|+.+|+.+...-++.+++|.+.|.+++.. ...+|.+++++.+++++++ ..+|
T Consensus 661 ~~~~~~~~~~a~~aEl~Pt~--~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~---~~~pf~i~a~~lll~~ll~-~~LP 734 (742)
T TIGR01299 661 LSIAAWNALDVLTVELYPSD--KRATAFGFLNALCKAAAVLGILIFGSFVGIT---KAAPILFASAALACGGLLA-LKLP 734 (742)
T ss_pred HHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHH-HhCC
Confidence 55555666778999999974 4588899999999999999999988776542 2347888888888877765 4569
Q ss_pred CCCCCCc
Q 012601 446 HLSSNSF 452 (460)
Q Consensus 446 e~~~~~~ 452 (460)
||+++..
T Consensus 735 ET~~~~l 741 (742)
T TIGR01299 735 DTRGQVL 741 (742)
T ss_pred CCccccc
Confidence 9999853
No 9
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.76 E-value=3.6e-17 Score=172.76 Aligned_cols=314 Identities=12% Similarity=0.098 Sum_probs=205.1
Q ss_pred hhHhhchhhHHhhhcCCcccccccCCCccchhHHHH-------------------------HHHHHHhhcccccchhHHH
Q 012601 6 VIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFV-------------------------IGFWLLDLANNTVQGPARA 60 (460)
Q Consensus 6 ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v-------------------------~~~~lld~a~n~~~~p~rA 60 (460)
-+.=+.++++...++|++ ++|+++||||.++.++ +...+.+++......|..|
T Consensus 52 ri~dai~dp~~G~lsD~t--~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~a 129 (473)
T PRK10429 52 RIWDAINDPIMGWIVNNT--RSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWS 129 (473)
T ss_pred HHHHHHhhchheeehhcC--CCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHh
Confidence 344456777777889998 7899999999775221 1112344555667778999
Q ss_pred HHhcCC-CccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEe
Q 012601 61 LLADLS-GPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFA 139 (460)
Q Consensus 61 ~i~D~~-p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v 139 (460)
+++|++ +++||.+.+++...+.++|+.++..+.... . +.++ +.. ....|+....+.+++.+++..++++..
T Consensus 130 l~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~-~-~~~g---~~~---~~~g~~~~~~i~~~~~~~~~~~~~~~~ 201 (473)
T PRK10429 130 LVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF-V-NYVG---GGD---RGFGFQMFTLVLIAFFIVSTIITLRNV 201 (473)
T ss_pred hhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhC---CCc---hhhhHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999 589999999998888888866654433210 0 1111 000 012467777777777777777777778
Q ss_pred eccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHH
Q 012601 140 DEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVN 219 (460)
Q Consensus 140 ~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (460)
||++..+..+.+ . .++.++++
T Consensus 202 ~e~~~~~~~~~~--------------------------------------------------~---------~~~~~~~~ 222 (473)
T PRK10429 202 HEVYSSDNQVSA--------------------------------------------------E---------GSHLTLKD 222 (473)
T ss_pred eecCCccccccc--------------------------------------------------c---------ccCCCHHH
Confidence 887522111000 0 01123555
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012601 220 LLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFL 299 (460)
Q Consensus 220 l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i 299 (460)
.++.+.+. |+++.+++..++.+.+......+...|+.. + .+++ + ..+ +.+.+.++..++...+
T Consensus 223 ~~~~~~~n-~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y-~-~~~~-----------~--~~~-~~~~~~~i~~ii~~~~ 285 (473)
T PRK10429 223 IVALIYKN-DQLSCLLGMALAYNIASNIINGFAIYYFTY-V-IGDA-----------D--LFP-YYLSYAGAANLVTLIL 285 (473)
T ss_pred HHHHHhcC-HHHHHHHHHHHHHHHHHHHHhhheeeEEEE-E-CCCH-----------H--HHH-HHHHHHHHHHHHHHHH
Confidence 56655444 677888888888887776666666555432 2 2221 0 111 2334455677778888
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhh
Q 012601 300 IEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITA 379 (460)
Q Consensus 300 ~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis 379 (460)
.+++.||+|+|+++.++..+.+++.+...+......+ +.+..++...+.|++.+.....++++++
T Consensus 286 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~l~g~~~~~~~~~~~am~a 350 (473)
T PRK10429 286 FPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH---------------NALLIVIAGILLNIGTALFWVLQVIMVA 350 (473)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998887666555443332111001 1344555666788999999999999999
Q ss_pred ccccC-----CCCCcccchhhhHHHHHHHHHHHhhccccceecccC
Q 012601 380 ELTAD-----SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 380 ~~~~~-----~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
|..+. ..|..|...|..+.+.-+++.+++.+.|.+++..|.
T Consensus 351 d~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 351 DTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99663 246678899999999999999999998988776653
No 10
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.76 E-value=6.6e-18 Score=177.54 Aligned_cols=320 Identities=10% Similarity=0.050 Sum_probs=188.9
Q ss_pred hhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHH
Q 012601 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (460)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~ 127 (460)
.++......+..++++|..|+++|+++.++.+....+|.++++.++... .....+... ...+||++|.+.+++
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~------~~~gWr~~f~~~~~~ 203 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI-ARSGDASWL------NTDGWRYMFASEAIP 203 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hccCccccc------ccCChHHHHHHHHHH
Confidence 3444555667899999999999999999999999999999988776531 110000000 013799999998888
Q ss_pred HHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 012601 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (460)
Q Consensus 128 ~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (460)
.+++.+ ..+.+||+|.+..++++.+++.+ ..++...+. +.+
T Consensus 204 ~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~--------~~~~~~~~~-------------------~~~----------- 244 (479)
T PRK10077 204 ALLFLM-LLYFVPETPRYLMSRGKQEQAEG--------ILRKIMGNT-------------------LAT----------- 244 (479)
T ss_pred HHHHHH-HHHcCCCCcHHHHHcCCHHHHHH--------HHHHHcCCh-------------------hHH-----------
Confidence 776654 46778998854322221100000 000000000 000
Q ss_pred CCCCCchhhHHHHHHH-----hccCCHHHHH----HHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHH
Q 012601 208 SFNDGPGAVLVNLLTS-----LRHLPPAMHV----VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQG 278 (460)
Q Consensus 208 ~~~~~~~~~~~~l~~s-----~~~mP~~l~~----l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~g 278 (460)
......++..+. ...++..... .+...+.+..+++...+|.+++..+ ++.++.
T Consensus 245 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~--~g~~~~------------ 306 (479)
T PRK10077 245 ----QALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT--LGASTD------------ 306 (479)
T ss_pred ----HHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH--cCCCCc------------
Confidence 000000000000 0000000011 1222334445555666666665543 222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHH
Q 012601 279 VREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (460)
Q Consensus 279 v~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (460)
.+.+..+..++..++.+++.+++.||+|||++++.+.++++++++.+...... + . + ......
T Consensus 307 --~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~--~-----~------~---~~~~~~ 368 (479)
T PRK10077 307 --IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--Q-----A------P---GIVALL 368 (479)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc--C-----c------c---cHHHHH
Confidence 11123445666778889999999999999999999999999888766544311 1 0 0 112222
Q ss_pred HHHHhhhhhhh-hcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce------ecccCccchhHhHHHH
Q 012601 359 VFTLLGFPLAI-TYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD------ALFGGGNIPAFVLASL 431 (460)
Q Consensus 359 ~~~~~Gi~~a~-~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~------~~~g~~~~~~f~~~~v 431 (460)
.+.+++++++. ...+.+++++|..|. +.+|+.+|+.+....+++++.+.+++.+. +..+. ...|.+.++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~ 444 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPN--AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN--GFSYWIYGC 444 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCCh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC--ccHHHHHHH
Confidence 33344444443 235667899999986 45689999999999999999877665433 33443 346888888
Q ss_pred HHHHHHHHhhhccCCCCCCCcc
Q 012601 432 SALAGGVVATLKLPHLSSNSFR 453 (460)
Q Consensus 432 ~~lia~~~~~~~vpe~~~~~~~ 453 (460)
.+++++++.++++||+|+|+.+
T Consensus 445 ~~~~~~~~~~~~~~e~~~~~~~ 466 (479)
T PRK10077 445 MGVLAALFMWKFVPETKGKTLE 466 (479)
T ss_pred HHHHHHHHHHhccccCCCCCHH
Confidence 8888888777889999998764
No 11
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.74 E-value=8.9e-17 Score=165.38 Aligned_cols=291 Identities=16% Similarity=0.082 Sum_probs=190.8
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++......+..+++.|..|+++|++++++.+....+|..++..++.. +.+ ..+||..|.+.
T Consensus 111 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--~~~-------------~~~~~~~~~~~ 175 (406)
T PRK11551 111 LLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL--AAG-------------DAAWRHIFYVG 175 (406)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hcc-------------ccCHHHHHHHH
Confidence 445555666667789999999999999999999999999999999887753 111 13689999887
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.++...+..+..||+|.+..++.++ +
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------------------------------------------~-- 204 (406)
T PRK11551 176 GVGPLLLVPLLMRWLPESRAFAQAAGAG-------------------------------------------------K-- 204 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhHHhccCcc-------------------------------------------------h--
Confidence 7765555555566678876432111100 0
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
..+...+.+++.. ..+..+.+++..++.....+.+..|.+.|+.+ .+.++. ..| +
T Consensus 205 -------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~-------------~~~-~ 259 (406)
T PRK11551 205 -------QRAPVLRALFGEG--RATATLLLWISYFFTLIVLYFLLNWLPSLLVG--QGLSRS-------------QAG-L 259 (406)
T ss_pred -------hhhhhHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChh-------------hhh-H
Confidence 0001111222210 01122344555555555566666666776654 222211 112 2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+++...+.+++.+++.||+|||+++.++....+++++...+.. + .+...+...+.|
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g 319 (406)
T PRK11551 260 VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP----S----------------FAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC----c----------------HHHHHHHHHHHH
Confidence 34556677888899999999999999998887666655544333222 1 333445556678
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
+.++...++.++++.|..|++ .+|+.+|+.+....+++.+.+.++|.+.+..++. ...+...+.+.+++.+++++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQ--VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRST-VGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchh--hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCch-HHHHHHHHHHHHHHHHHHHHHh
Confidence 888777788888999999874 5688899999999999999999999998865543 3456667777777777666555
Q ss_pred CCCCC
Q 012601 445 PHLSS 449 (460)
Q Consensus 445 pe~~~ 449 (460)
++.+.
T Consensus 397 ~~~~~ 401 (406)
T PRK11551 397 SRPSR 401 (406)
T ss_pred cchhc
Confidence 54443
No 12
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.73 E-value=5.8e-21 Score=199.37 Aligned_cols=337 Identities=14% Similarity=0.153 Sum_probs=206.9
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++....+.....|+.|.+|+++|++..++.+....+|.++++.++.. +.+.. + ..+||..+.+.
T Consensus 110 ~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~----~------~~~Wr~~~~~~ 177 (451)
T PF00083_consen 110 FLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYI--VSYYS----D------NWGWRILLIFG 177 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc----c------ccccccccccc
Confidence 445666777788999999999999999999999999999999998888754 22110 0 13699999999
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.++. ++..+++||+|+|...+++.+|+++.++.-++. + ...++.++.++ ..+
T Consensus 178 ~~~~l~~-~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~--------~------------~~~~~~~~~~~---~~~- 232 (451)
T PF00083_consen 178 AIPSLLV-LLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGK--------E------------IEDEEIEEIKA---EKK- 232 (451)
T ss_pred ccccccc-cccccccccccceeccccccccccccccccccc--------c------------ccccccccccc---ccc-
Confidence 9998654 456789999999998777666665554431111 0 00000111110 000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHH-HHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALT-WLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~-w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~ 283 (460)
+. .+.+.+++++++... +.+.+...+..++++ +.|++...+|.+..+.+...+ + + .
T Consensus 233 --~~--~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~--~-----------~-----~ 289 (451)
T PF00083_consen 233 --ES--QESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGIS--N-----------S-----F 289 (451)
T ss_pred --cc--cccceeeeecccccc-ccccccccccccccccccccccccccccccccccccc--c-----------c-----c
Confidence 00 001123344444321 122333333333333 566666666666554432111 0 0 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HhhhhccccccCccccCCCCcchhHHHHHHHHHH
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTA-IISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (460)
....+.++...+.+++...++||+|||++++++.++.+++++.++ ..... .+ +. ... +........+..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~-~~---~~--~~~--~~~~i~~~~l~~~~ 361 (451)
T PF00083_consen 290 LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLG-VS---SS--SWW--SILSIVFLALFFAF 361 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-cc---cc--ccc--ccccceeeeecccc
Confidence 122233345556666667999999999999999998888876654 11110 01 00 000 00011122222234
Q ss_pred hhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012601 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 363 ~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
++.+++ .+++.+++|..|.+.| ++.+|+.+...++..++.+.....+.+..+.. ..|.+.+++++++.+++.+
T Consensus 362 ~~~g~~---~~~~~~~~ElfPt~~R--~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~--~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 362 FSLGWG---PLPWIYTAELFPTKVR--STGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW--GVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred cccccc---cccccccccccccccc--cccccccccccccccccccccccccccccccc--ccchhhHHHHHHHHhheeE
Confidence 455555 5556699999998655 55669999999999999998888887776622 3677878888888888889
Q ss_pred ccCCCCCCCccCCC
Q 012601 443 KLPHLSSNSFRSSG 456 (460)
Q Consensus 443 ~vpe~~~~~~~~~~ 456 (460)
++||||||+...-.
T Consensus 435 ~lpET~g~~l~ei~ 448 (451)
T PF00083_consen 435 FLPETKGKTLEEIQ 448 (451)
T ss_pred EEeeCCCCCHHHHH
Confidence 99999999986543
No 13
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.73 E-value=2.9e-16 Score=162.63 Aligned_cols=304 Identities=15% Similarity=0.168 Sum_probs=213.6
Q ss_pred hchhhHHhhhcCCcccccccCCCccchhHHHH-------------------------HHHHHHhhcccccchhHHHHHhc
Q 012601 10 GFSADIGYILGDTKEHCSKFRGTRTRAAFVFV-------------------------IGFWLLDLANNTVQGPARALLAD 64 (460)
Q Consensus 10 ~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v-------------------------~~~~lld~a~n~~~~p~rA~i~D 64 (460)
++.+++-..+.|++ ++|+|++|||.++.++ +-..+++++-.....|.-|+.++
T Consensus 62 Ai~DP~~G~i~D~t--~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~ 139 (467)
T COG2211 62 AITDPIMGFIVDRT--RSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPE 139 (467)
T ss_pred HHhcchheeeeccc--ccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchh
Confidence 56677777788988 7999999999876422 33355677777788899999999
Q ss_pred CCC-ccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeeccC
Q 012601 65 LSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVP 143 (460)
Q Consensus 65 ~~p-~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p 143 (460)
+++ |+||.+.++|.+...++|+.+...+-.. +.+.++ ++. ...+|+..-.+-.++.++.++++.+.++|++
T Consensus 140 iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p--lv~~~g---~~~---~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 140 ITQDPQERASLTSWRMVFASLGGLLVAVLFPP--LVKLFG---GGD---KALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC---CCc---chhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 998 5999999999999999997775544322 112221 110 0136777777777777777888888899987
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHHHH
Q 012601 144 LTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTS 223 (460)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 223 (460)
....+.++ +.+.++++.+..
T Consensus 212 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~ 231 (467)
T COG2211 212 VETQPTKT------------------------------------------------------------GVKLKLKDSFLL 231 (467)
T ss_pred CccccCcc------------------------------------------------------------cccccHHHHHHH
Confidence 52211110 011223322222
Q ss_pred hccCCHHHHHHHHHHHHHHHhhhhh---hhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012601 224 LRHLPPAMHVVLIVMALTWLSWFPF---FLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (460)
Q Consensus 224 ~~~mP~~l~~l~l~~f~~w~g~~~~---~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~ 300 (460)
+++. |+++.+|+..++.|.+.+-. ..|+.+|+ -+++ + ....+.+.......+++.++.
T Consensus 232 ~~~N-rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~-----------~--l~~~~~~~~~~~~~l~~~~~~ 292 (467)
T COG2211 232 IFKN-RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDP-----------E--LFAYLLLLASGAGLLIGLILW 292 (467)
T ss_pred HHcc-chHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCCh-----------H--HHHHHHHHHHHHHHHHHHHhH
Confidence 2222 56777788888888885543 33443332 1221 1 122245555666677778999
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhc
Q 012601 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (460)
Q Consensus 301 ~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~ 380 (460)
+++.+|+|+|++|.++.++.+++.+++.+... + +...+++...+.+++.+..+.+|+++++|
T Consensus 293 p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~---~---------------~~~l~~~~~~i~~~g~~~~~~l~wam~~d 354 (467)
T COG2211 293 PRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA---G---------------SVVLIVVALIIAGVGTGIANPLPWAMVAD 354 (467)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC---c---------------chHHHHHHHHHHHHHhhccccccHHHhcc
Confidence 99999999999999999999998888777651 1 25666777788999999999999999999
Q ss_pred cccC-----CCCCcccchhhhHHHHHHHHHHHhhccccceecccC
Q 012601 381 LTAD-----SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 381 ~~~~-----~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
..+- ..|..|...|+++.+.=+++.++..+.|.++...|.
T Consensus 355 ~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 355 TVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8763 247789999999999999999999888887766653
No 14
>TIGR00898 2A0119 cation transport protein.
Probab=99.73 E-value=2.7e-17 Score=174.42 Aligned_cols=315 Identities=15% Similarity=0.173 Sum_probs=189.5
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++.........+++.|..|+++|+++.++.+...++|.+++..++... .+||+.|.+.
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~wr~~~~~~ 249 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI------------------PDWRWLQLAV 249 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHH
Confidence 4456666677888999999999999999999999999999988888776431 1489999998
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.++..+. .+.+||+|++...+++.+++.+.+ ++..... .. +..++.... +..++
T Consensus 250 ~i~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~l--------~~~~~~~---------~~----~~~~~~~~~-~~~~~ 306 (505)
T TIGR00898 250 SLPTFLFFLL-SWFVPESPRWLISQGRIEEALKIL--------QRIAKIN---------GK----KLPAEVLSL-SLEKD 306 (505)
T ss_pred HHHHHHHHHH-HHhcCCChHHHHHCCCHHHHHHHH--------HHHHHHc---------CC----CCCHHHHhh-hhhhh
Confidence 8887666554 478999997754433321111110 0000000 00 000000000 00000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhc-cccccceeecCCCCCCChhhhhHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFD-TDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~-t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~ 283 (460)
..+ ...+.+++++++. +.++...+..++.|+.... .+|. +.++. .+..+ .|
T Consensus 307 ~~~---~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~---------~~-------- 358 (505)
T TIGR00898 307 LSS---SKKQYSFLDLFRT-----PNLRKTTLCLMMLWFTTAF-SYYGLVLDLG--NLGGN---------IY-------- 358 (505)
T ss_pred hhh---ccCCCcHHHHhCC-----hHHHHHHHHHHHHHHHHHH-HHHHHhcccc--ccCCC---------hH--------
Confidence 000 0011234444432 3445545555555655432 2222 22221 11111 11
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+...+.+++.+...++.+++.||+|||++..++.++.+++++++.+... . ..+...++..+.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~---~---------------~~~~~~~~~~~~ 420 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV---D---------------LYFLRTALAVLG 420 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC---C---------------chHHHHHHHHHH
Confidence 1223455667777888899999999999999998888887766555431 0 012233333444
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
+++.+....+.+++.+|..|.+ .+|+.+|+.+....++++++|.+.+ +.+ .+. ...+.+.+++++++++++ ++
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~--~~~~~~~~~~~~~~~~~~-~~ 493 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTV--VRNLGVGVCSTMARVGSIISPFLVY-LGE-KWL--FLPLVLFGGLALLAGILT-LF 493 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHH--HHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHH--hhHHHHHHHHHHHHHHHH-Hc
Confidence 5555555566678899999974 4577789999999999999998877 432 222 236777777777777754 67
Q ss_pred cCCCCCCCcc
Q 012601 444 LPHLSSNSFR 453 (460)
Q Consensus 444 vpe~~~~~~~ 453 (460)
+|||++|...
T Consensus 494 lpet~~~~l~ 503 (505)
T TIGR00898 494 LPETKGVPLP 503 (505)
T ss_pred CcCCCCCCCC
Confidence 8999998764
No 15
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.73 E-value=1.9e-16 Score=164.22 Aligned_cols=338 Identities=13% Similarity=0.138 Sum_probs=191.6
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccc---ccccccccccccccchhhccccchhHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAG---ASGSWHRWFPFLTSRACCAACGNLKAAF 121 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig---~i~~~~~~~~~~~~~~~~~~~~~~~~~f 121 (460)
.+..++.........+++.|..|+++|+++.++.+...++|.++|+.++ .. +.+ ..+||+.|
T Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~-------------~~~w~~~f 199 (481)
T TIGR00879 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS--LNN-------------TLGWRIPL 199 (481)
T ss_pred HHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc--CCC-------------CccHHHHH
Confidence 3444555566677899999999999999999999999999999999988 32 111 13799999
Q ss_pred HHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhh--hhc
Q 012601 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLK--HIS 199 (460)
Q Consensus 122 ~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 199 (460)
.+.++..++.+ +..+.+||+|.+...+++.+++ ....++.+... +...+..+... ...
T Consensus 200 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 259 (481)
T TIGR00879 200 GLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEA--------RKSLARLRGTS-----------GEDKELLDELELIDIK 259 (481)
T ss_pred HHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHH--------HHHHHHHhCCC-----------CCcHHHHHHHHHHHHH
Confidence 99777765554 4466789987532211110000 00000000000 00000000000 000
Q ss_pred ccccccCCCCCCCchhhHHHHHHHhccC-CHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHH
Q 012601 200 KKAEDTNGSFNDGPGAVLVNLLTSLRHL-PPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQG 278 (460)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~s~~~m-P~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~g 278 (460)
+..+. + ..+..++++++..+.. ++.+...++..+....++..+.+|.+.+..+ ++.++
T Consensus 260 ~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~------------- 318 (481)
T TIGR00879 260 RSIEK--R----SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN--AGVST------------- 318 (481)
T ss_pred HHHHH--h----hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH--cCCCc-------------
Confidence 00000 0 0011123333321111 1111122222222233344445555554433 22221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHH
Q 012601 279 VREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (460)
Q Consensus 279 v~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (460)
..+.+......+...+.+++.+++.||+|||+++.++.++++++++...+......+ ..... .....+.
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~ 387 (481)
T TIGR00879 319 -DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT----GSSKS------SGNVAIV 387 (481)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC----Ccccc------hhHHHHH
Confidence 111234455666778889999999999999999999988888877666543211000 00000 0111111
Q ss_pred HHHHhhhhhh-hhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHH
Q 012601 359 VFTLLGFPLA-ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (460)
Q Consensus 359 ~~~~~Gi~~a-~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~ 437 (460)
...+++.+++ ....+.+++++|..|+ +.+|+.+|+.++...+++++.+.++|.+.+..|. ...|.+.++++++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~ 463 (481)
T TIGR00879 388 FILLFIAFFAMGWGPVPWVIVSEIFPL--SLRPKGISIAVAANWLANFIVGFLFPTMLESIGV--GGVFIFFGGLNVLGL 463 (481)
T ss_pred HHHHHHHHHHccccCeehhhhhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cceehhHHHHHHHHH
Confidence 2222222222 1335666788999987 4568999999999999999999999988876653 347888888888888
Q ss_pred HHhhhccCCCCCCCcc
Q 012601 438 VVATLKLPHLSSNSFR 453 (460)
Q Consensus 438 ~~~~~~vpe~~~~~~~ 453 (460)
+.+.++.||+|+++.+
T Consensus 464 i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 464 IFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHheecccCCCCChh
Confidence 8887889999998754
No 16
>PRK09669 putative symporter YagG; Provisional
Probab=99.72 E-value=2.3e-16 Score=165.03 Aligned_cols=308 Identities=12% Similarity=0.053 Sum_probs=195.3
Q ss_pred eehhHhhchhhHHhhhcCCcccccccCCCccchhHHHH-------H------------------HHHHHhhcccccchhH
Q 012601 4 VAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFV-------I------------------GFWLLDLANNTVQGPA 58 (460)
Q Consensus 4 i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v-------~------------------~~~lld~a~n~~~~p~ 58 (460)
++.+.=+.++++...++|++ ++|+++||||.++.++ + ...+++.+......|.
T Consensus 53 i~~i~dai~dp~~G~lsD~~--~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~ 130 (444)
T PRK09669 53 VVRVLDAVTDPLMGALVDRT--RTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPY 130 (444)
T ss_pred HHHHHHHcccceeeEeeecC--CCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchH
Confidence 34455667788888889998 6899999999863211 1 1122344555677799
Q ss_pred HHHHhcCCC-ccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeE
Q 012601 59 RALLADLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIY 137 (460)
Q Consensus 59 rA~i~D~~p-~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~ 137 (460)
.|+.+|+++ +++|.+.+++......+|+.++..+... +...++ +. .....|+..+.+.+++.+++..++++
T Consensus 131 ~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~p--l~~~~~---~~---~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 131 CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALP--LVDILG---KG---DEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC---CC---chhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999994 5889999999999999998887655432 111111 00 00135777777777766666666677
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhH
Q 012601 138 FADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVL 217 (460)
Q Consensus 138 ~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (460)
..||++..+ ++++ ......+
T Consensus 203 ~~~e~~~~~-~~~~-----------------------------------------------------------~~~~~~~ 222 (444)
T PRK09669 203 MTKERYTPE-VDNS-----------------------------------------------------------SSVWKDL 222 (444)
T ss_pred CeEEecCCC-CcCC-----------------------------------------------------------CCHHHHH
Confidence 778864221 0000 0011223
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012601 218 VNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSS 297 (460)
Q Consensus 218 ~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s 297 (460)
++++++ |+++.+++..++.+.+......+...|+.. .. +++ + .+...+....+..++..
T Consensus 223 ~~~~~n-----~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~-~~-~~~-----------~---~~~~~~~~~~i~~ii~~ 281 (444)
T PRK09669 223 KLLLGN-----SQWRIMFIFNVVLLTAVVTRGGATLYYVNY-VL-LRP-----------D---LATLFLVTGMIAGLFGA 281 (444)
T ss_pred HHHhCC-----chHHHHHHHHHHHHHHHHHHhhhhheeeee-ec-CCH-----------H---HHHHHHHHHHHHHHHHH
Confidence 333332 456677777777766653322222222221 22 111 1 11122334445566677
Q ss_pred HhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchh
Q 012601 298 FLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAI 377 (460)
Q Consensus 298 ~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aL 377 (460)
.+.+++.||+|+|+.+.++.++.+++.+...+... + +.+..++.+.+.|++.+....+++++
T Consensus 282 ~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 282 LLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP---S---------------NVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc---c---------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999887766654433333220 1 24455666778999999999999999
Q ss_pred hhccccCC-----CCCcccchhhhHHHHHHHHHHHhhccccceecccC
Q 012601 378 TAELTADS-----GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 378 is~~~~~~-----~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
++|..+.+ +|..|...|+.+.+.-+++.+.+.+.|.+++..|.
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99887632 24568889999999999999999998988776654
No 17
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.72 E-value=4.5e-16 Score=156.96 Aligned_cols=307 Identities=15% Similarity=0.092 Sum_probs=186.4
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++......+..+++.|..|+++|++++++.+.+.++|.++|..+++. +.+ ..+||+.|.+.
T Consensus 90 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--l~~-------------~~~~~~~~~~~ 154 (399)
T TIGR00893 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW--ILI-------------HFSWQWAFIIE 154 (399)
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHH--HHH-------------hCCchHHHHHH
Confidence 445556566677889999999999999999999999999999999887764 111 12589999988
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.++..++..+..||+|..+....+ +.++ ...++.+.+. + ..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~---------------------~----~~~- 199 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPPQKAKWLTE--EEKY-------IVVGGLLAEQ---------------------Q----GKG- 199 (399)
T ss_pred HHHHHHHHHHhhheecCCCCccccCCH--HHHh-------hcchhhcccc---------------------c----ccc-
Confidence 877766666666677776632211110 0000 0000000000 0 000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
+ +......+++.++. +.++.+++..++.+.++..+..|.+.|+.+ .++.++. ..| +
T Consensus 200 --~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~-~ 255 (399)
T TIGR00893 200 --P--STPKKYQIKELLKD-----RRVWGLALGQFLVNIGLGFFLTWFPTYLVQ-ERGLSIL-------------EAG-F 255 (399)
T ss_pred --c--cCCCccchHHHhcC-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhcccHH-------------Hhh-H
Confidence 0 00111223333332 456677888888888888888888887764 2332210 112 2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
......+..++.+++.+++.||+|||+... .......++.+...+..... + .. + ..+.......+.
T Consensus 256 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~------~--~~~~~~~~~~~~ 322 (399)
T TIGR00893 256 MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N----YV------N--IPYAALALVALG 322 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c----cc------h--hHHHHHHHHHHH
Confidence 345566778888999999999999996211 11111111111111111000 0 00 0 123333333334
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
+.+.+ ...+.+++++|..|+ +.+|+.+|+.+....+++.+.+.+.|.+.+..|.. ...|.+.+++.+++.+...+
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 323 FFGLG-AGAIGWALISDNAPG--NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF-AGALMVVAALALIGALSYLL 397 (399)
T ss_pred Hhchh-hhhHHHHHHHhhcCh--hHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch-hHHHHHHHHHHHHHHHHHHH
Confidence 44444 667788899999987 45699999999999999999999999999887733 35788888888887776543
No 18
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.68 E-value=1.2e-15 Score=158.10 Aligned_cols=284 Identities=14% Similarity=0.093 Sum_probs=183.9
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHh
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~ 132 (460)
....+..++++|.+|+++|++++++.+...++|..+|+.+++.. .+. .+|++.|.+.++..+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l--~~~-------------~~~~~~~~~~~~~~~~~~ 190 (417)
T PRK10489 126 LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL--IAA-------------GGVAWNYGLAAAGTFITL 190 (417)
T ss_pred HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH--HHH-------------HhhHHHHHHHHHHHHHHH
Confidence 33456788899999999999999999999999999999988751 111 257788888777766554
Q ss_pred hheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCC
Q 012601 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (460)
Q Consensus 133 ~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (460)
++ ++.+||.+.+. +.+ + +
T Consensus 191 ~~-~~~l~~~~~~~--~~~---------------------------------------------------~--------~ 208 (417)
T PRK10489 191 LP-LLRLPALPPPP--QPR---------------------------------------------------E--------H 208 (417)
T ss_pred HH-HHhCCCCCCCC--ccc---------------------------------------------------c--------c
Confidence 43 55667654211 000 0 0
Q ss_pred chhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHH
Q 012601 213 PGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVV 292 (460)
Q Consensus 213 ~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~ 292 (460)
....+++-++...+-| .++.+.+..++. .....+..+.+.|+.+ .++.++. ..| +.+..+++.
T Consensus 209 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~p~~~~~-~~g~~~~-------------~~g-~~~~~~~~g 271 (417)
T PRK10489 209 PLRSLLAGFRFLLASP-VVGGIALLGGLL-TMASAVRVLYPALADE-VWQMGAA-------------QIG-LLYAAVPLG 271 (417)
T ss_pred chHHHHHHHHHHHcCh-HHHHHHHHHHHH-HHHHhHHHhhHHHHHh-ccCCChh-------------HhH-HHHHHHHHH
Confidence 0011111122222222 333333333322 2223444455666553 3443321 122 234456667
Q ss_pred HHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcC
Q 012601 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (460)
Q Consensus 293 ~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (460)
.++.+++.+++.||.++++++..+..+.+++++...+.. +.....+...+.|++.+....
T Consensus 272 ~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~ 331 (417)
T PRK10489 272 AALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--------------------MWILAVLCLALFGYLSAISSL 331 (417)
T ss_pred HHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999997777777777777766655443322 134455566678888877767
Q ss_pred ccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCCCCc
Q 012601 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSNSF 452 (460)
Q Consensus 373 vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~~~~ 452 (460)
+.++++.+..|+ +.+|+.+|+.+....+++.+.+.+.|.+.+..|.. ..+...+++.++.++.+...+||+|+++-
T Consensus 332 ~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 332 LQYTLLQTQTPD--EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV--ASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred HHHHHHHhhCCH--HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 777889999986 35688999999999999999999999998887743 46777777777766666788899998775
Q ss_pred cC
Q 012601 453 RS 454 (460)
Q Consensus 453 ~~ 454 (460)
..
T Consensus 408 ~~ 409 (417)
T PRK10489 408 TP 409 (417)
T ss_pred cc
Confidence 43
No 19
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.68 E-value=2.2e-15 Score=159.80 Aligned_cols=309 Identities=10% Similarity=0.086 Sum_probs=173.4
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++......+..+++.|..|+++|+++.++.+....+|..+|..+... ....++ ... .....||++|.++++
T Consensus 128 ~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~--~~~~~~---~~~--~~~~gWR~~f~i~~~ 200 (490)
T PRK10642 128 QGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL--ISTIVG---EAN--FLDWGWRIPFFIALP 200 (490)
T ss_pred HHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC---HHH--hcCccHHHHHHHHHH
Confidence 3455556666889999999999999999999988877888777655432 111110 000 001369999999887
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.++++.+ ...+||+|.+..++++.++.. + + ..+
T Consensus 201 ~~l~~~~~-~~~~~esp~~~~~~~~~~~~~--------------~-~---------------------------~~~--- 234 (490)
T PRK10642 201 LGIIGLYL-RHALEETPAFQQHVDKLEQGD--------------R-E---------------------------GLQ--- 234 (490)
T ss_pred HHHHHHHH-HHcCCCChhHHHHHHhhhhhc--------------c-c---------------------------ccc---
Confidence 66554443 567899876432111100000 0 0 000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+ .++.+++++++. .++.+...+...++...+++.+..|.+.|+.+ .++-++ .+ +.+..
T Consensus 235 ~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~----------~~----~~~~~ 292 (490)
T PRK10642 235 D----GPKVSFKEIATK---HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH-NLHYSE----------DH----GVLII 292 (490)
T ss_pred c----cccCCHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH----------HH----HHHHH
Confidence 0 011234555542 12222222333344445666677778877753 233221 11 11233
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHH-HHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMAT-TAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
....+...+.+.+.+++.||+|||+.+.++.++..++... ...... + +....++...+.|+
T Consensus 293 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~g~ 354 (490)
T PRK10642 293 IAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS---N---------------VIGLIFAGLLMLAV 354 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC---C---------------CHHHHHHHHHHHHH
Confidence 4455566677888999999999999988776544432222 111110 1 12223333344555
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhh-hHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi-~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
..+....+-.+++.|+.|.+ .+|+.+|+ .|+.. +...+.|.+.|.+.+..+.. ..++.+..+.++++.+.. +++
T Consensus 355 ~~~~~~g~~~~~~~~~~p~~--~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~~~-~~~~~~~~~~~~i~~~~~-~~~ 429 (490)
T PRK10642 355 ILNCFTGVMASTLPAMFPTH--IRYSALAAAFNISV-LVAGLTPTLAAWLVESTQNL-MMPAYYLMVVAVIGLITG-VTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHCCCc--cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHHH-HHh
Confidence 54444444445778888874 45777786 55554 44567777777776654422 234455566666666544 567
Q ss_pred CCCCCCCcc
Q 012601 445 PHLSSNSFR 453 (460)
Q Consensus 445 pe~~~~~~~ 453 (460)
|||+++..+
T Consensus 430 pes~~~~~~ 438 (490)
T PRK10642 430 KETANRPLK 438 (490)
T ss_pred ccccCCCCC
Confidence 999988775
No 20
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.67 E-value=2e-15 Score=152.97 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=172.7
Q ss_pred cccchhHHHHHhcCCCccchhhH--HHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHH
Q 012601 52 NTVQGPARALLADLSGPDQRNSA--NAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT 129 (460)
Q Consensus 52 n~~~~p~rA~i~D~~p~~qr~~a--~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~ 129 (460)
+.......+++.|..|+++|+++ +++.+...++|..+|..+++. +.+. .+||+.|.+.+++.+
T Consensus 102 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~--l~~~-------------~~~~~~f~~~~~~~~ 166 (375)
T TIGR00899 102 STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFW--LALG-------------FGFTVMFLTAALAFV 166 (375)
T ss_pred hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHH--HHHh-------------cccHHHHHHHHHHHH
Confidence 34444567888898888777755 677878888999999888764 2111 269999999888876
Q ss_pred HHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCC
Q 012601 130 LCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSF 209 (460)
Q Consensus 130 i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (460)
++.++..+.+||+|.++.++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 188 (375)
T TIGR00899 167 LCGVLVWLFLPSYPRGAPGALT---------------------------------------------------------- 188 (375)
T ss_pred HHHHHHHHhCCCcccCcccccC----------------------------------------------------------
Confidence 6666666668886632111000
Q ss_pred CCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHH
Q 012601 210 NDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLN 289 (460)
Q Consensus 210 ~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~ 289 (460)
....++.++ .++++.+.+..++.|.+...+..+.+.|+.+ .++.++. ..| +.+...
T Consensus 189 ----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~g-~~~~~~ 244 (375)
T TIGR00899 189 ----RLEVRGLLA-----SRDTRLLFVACTLMWGCNILYIINMPLLIIH-ELGLPDK-------------LAG-LMMGTA 244 (375)
T ss_pred ----cchhhhhhc-----CcchHHHHHHHHHHHHHHHHHHhhhHHHHHH-HcCCCHH-------------HHH-HHHHHH
Confidence 000111111 2334444555556565554444455555433 2333221 112 122334
Q ss_pred HHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhh
Q 012601 290 SVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAI 369 (460)
Q Consensus 290 si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~ 369 (460)
.+...+..++.+++.||+|||++..++.++.+++++...+.. + .+...+...+.|++.+.
T Consensus 245 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 245 AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN----S----------------LWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH----H----------------HHHHHHHHHHHHHHHHH
Confidence 445566678899999999999998887766555443333222 1 33444555667777777
Q ss_pred hcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 370 TYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 370 ~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
...+..+.+.|..|+ +.|..+|+.+....+++.+.+.+.|.+.+..|. ...|.+.+++.+++.++. .+++|
T Consensus 305 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~--~~~~~~~~~~~~~~~~~~-~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG---RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY--HAVYWFAIVMLIVALFCL-LLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHH-heecC
Confidence 666667778888775 246888999999999999999999988877663 357888888888888765 44554
No 21
>PRK11462 putative transporter; Provisional
Probab=99.67 E-value=3.7e-15 Score=157.09 Aligned_cols=298 Identities=14% Similarity=0.127 Sum_probs=186.0
Q ss_pred hhchhhHHhhhcCCcccccccCCCccchhHHHH-------------------------HHHHHHhhcccccchhHHHHHh
Q 012601 9 IGFSADIGYILGDTKEHCSKFRGTRTRAAFVFV-------------------------IGFWLLDLANNTVQGPARALLA 63 (460)
Q Consensus 9 l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v-------------------------~~~~lld~a~n~~~~p~rA~i~ 63 (460)
=++++++-..++|++ ++|+|++|||.++.++ +...+++.+.-....|..|+.+
T Consensus 58 Dai~Dp~~G~~~D~t--~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~ 135 (460)
T PRK11462 58 DAISDPCMGLLADRT--RSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGG 135 (460)
T ss_pred HHHHhhhheehhccC--CCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 356778878889998 6899999999765221 1223356666667779999999
Q ss_pred cCCC-ccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeecc
Q 012601 64 DLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEV 142 (460)
Q Consensus 64 D~~p-~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~ 142 (460)
|+++ ++||.+.+++.+....+|+.++..+... +-+.+ +++ .....|+....+.+++.+++..+.....||+
T Consensus 136 ~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p--lv~~~---g~~---~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 136 VITNDPTQRISLQSWRFVLATAGGMLSTVLMMP--LVNLI---GGD---NKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh---CCC---chhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 9998 6999999999999998888777655432 11111 110 0012466666676777667776666667775
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHHH
Q 012601 143 PLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLT 222 (460)
Q Consensus 143 p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (460)
+..+ +. +.++++.++
T Consensus 208 ~~~~--~~---------------------------------------------------------------~~~~~~~l~ 222 (460)
T PRK11462 208 VEAP--PT---------------------------------------------------------------TTSMREDLR 222 (460)
T ss_pred cCCC--cc---------------------------------------------------------------CCCHHHHHH
Confidence 4211 00 011222233
Q ss_pred HhccCCHHHHHHHHHHHHHHHhh---hhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012601 223 SLRHLPPAMHVVLIVMALTWLSW---FPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFL 299 (460)
Q Consensus 223 s~~~mP~~l~~l~l~~f~~w~g~---~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i 299 (460)
...+ .|+++.++...++.+++. .+...|+..|+ + +++ + .....+..+.+..++...+
T Consensus 223 ~~~~-Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~----~-g~~-----------~---~~~~~l~~~~i~~iig~~l 282 (460)
T PRK11462 223 DIWQ-NDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI----L-GTP-----------E---VFVAFLTTYCVGNLIGSAL 282 (460)
T ss_pred HHhC-ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh----c-CCh-----------H---HHHHHHHHHHHHHHHHHHH
Confidence 3221 245666665555555543 33333443332 1 221 1 1112455677778888899
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhh
Q 012601 300 IEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITA 379 (460)
Q Consensus 300 ~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis 379 (460)
.+++.||+|+|+++..+..+.++......+... + +....++...+.|++.+....+++++++
T Consensus 283 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~l~g~~~~~~~~l~~~m~a 344 (460)
T PRK11462 283 AKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM---Q---------------ASITMFVFIFVIGVLHQLVTPIQWVMMS 344 (460)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch---h---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887555444332322222210 0 1222334455578888888888899999
Q ss_pred ccccC-----CCCCcccchhhhHHHHHHHHHHHhhccccceeccc
Q 012601 380 ELTAD-----SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (460)
Q Consensus 380 ~~~~~-----~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g 419 (460)
|..+. ..|+.|...+..+.+.-+++.+++.+.|.+++..|
T Consensus 345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88763 13667888899889999999999988888776544
No 22
>PRK09952 shikimate transporter; Provisional
Probab=99.66 E-value=2.6e-15 Score=157.03 Aligned_cols=301 Identities=13% Similarity=0.038 Sum_probs=175.1
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........+|+.|..|+++|++..+..+....+|.+++..+... +...++ +.. .....||.+|.++++
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~--l~~~~~---~~~--~~~~gWr~~f~~~~~ 207 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL--ISMMTT---DEQ--FLSWGWRIPFLFSIV 207 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHhCC---HHH--hhccChHHHHHHHHH
Confidence 4555555556678899999999999999999988888888887655432 111110 000 001369999999988
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.++... .-...||+|.+..++.+. .+
T Consensus 208 ~~l~~~~-l~~~~~es~~~~~~~~~~-------------------------------------------------~~--- 234 (438)
T PRK09952 208 LVLIALW-VRNGMEESAEFEQQQHEQ-------------------------------------------------AA--- 234 (438)
T ss_pred HHHHHHH-HHHhCCCChhHHHHHhhc-------------------------------------------------cc---
Confidence 7654432 233456665332111000 00
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+ ..+.... +.+++.|+.........+..+.+.+.+..|.+.|+.+ .++.++ +. .. ...
T Consensus 235 ~----~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~g~s~----------~~---~~-~~~ 292 (438)
T PRK09952 235 A----KKRIPVI---EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQ-NLGLPR----------EL---FL-NIG 292 (438)
T ss_pred c----cccCCHH---HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH----------HH---HH-HHH
Confidence 0 0001111 1122234444443444555556666666666766654 233221 01 11 112
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
.+.++...+...+.++++||+|||+++..+.++.+++.......... .+ ..+..++...+.|++
T Consensus 293 ~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~l~~~~ 356 (438)
T PRK09952 293 LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA-QS---------------IFWIVFFSIMLANIA 356 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-CC---------------hHHHHHHHHHHHHHH
Confidence 23455666777889999999999999888766655444322221100 01 123333344555777
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhh-HHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVL-NLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~-n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
.+....+-+++++|..|.+. +++..|+. +....++..++|.+.|.+++..++.....+.+.+++++++++.. +.+|
T Consensus 357 ~~~~~~~~~~~~~e~~p~~~--r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~ 433 (438)
T PRK09952 357 HDMVVCVQQPMFTEMFGASY--RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHCCcch--hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcc
Confidence 77666667789999999743 45555664 45556888899999888887654333456777888888887765 4567
Q ss_pred CCC
Q 012601 446 HLS 448 (460)
Q Consensus 446 e~~ 448 (460)
|++
T Consensus 434 ~~~ 436 (438)
T PRK09952 434 DNQ 436 (438)
T ss_pred ccc
Confidence 754
No 23
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.66 E-value=6.6e-15 Score=156.40 Aligned_cols=316 Identities=13% Similarity=0.041 Sum_probs=183.1
Q ss_pred hhhHHhhhcCCcccccccCCCccchhHHHH---HH-------------------HHHHhhcccccchhHHHHHhcCCCcc
Q 012601 12 SADIGYILGDTKEHCSKFRGTRTRAAFVFV---IG-------------------FWLLDLANNTVQGPARALLADLSGPD 69 (460)
Q Consensus 12 ~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v---~~-------------------~~lld~a~n~~~~p~rA~i~D~~p~~ 69 (460)
.+.+-.-+.|+-. .+++++||+|.++..+ ++ ..+..++......+..+++.|..|+|
T Consensus 61 ~~~l~gpl~Dr~~-~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 61 FKFLWSPLMDRYT-PPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHccc-ccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4444455678721 4666888887643111 11 12234455556668899999999999
Q ss_pred chhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeeccCCCCCCC
Q 012601 70 QRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQP 149 (460)
Q Consensus 70 qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~ 149 (460)
+|++++++.+....+|.++|..++.. +.+. ..+||.+|.+.++..+++.+..+ .+||++..+ +
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~--l~~~------------~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~-~- 202 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALW--LADR------------YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTI-P- 202 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHhc------------ccCHHHHHHHHHHHHHHHHHHHH-hcCCCcccc-c-
Confidence 99999999999888898888766643 1110 02699999998887766655444 478865211 0
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHHHHhccCCH
Q 012601 150 NHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPP 229 (460)
Q Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~ 229 (460)
.++ + .+ + .....++++++ .|+
T Consensus 203 ~~~-~-----------------------------------------------~~---~----~~~~~l~~~~~----~~~ 223 (491)
T PRK11010 203 VPK-T-----------------------------------------------LE---Q----AVVAPLRDFFG----RNN 223 (491)
T ss_pred ccc-c-----------------------------------------------hh---h----hHHHHHHHHHc----CcC
Confidence 000 0 00 0 01122333332 222
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
.+.+.+..++...+......+.+.|+.+ .++.+++ ..|........+..++..++.+++.||+|+
T Consensus 224 -~~~~ll~~~l~~~~~~~~~~~~~~~l~~-~~G~s~~-------------~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~ 288 (491)
T PRK11010 224 -AWLILLLIVLYKLGDAFAMSLTTTFLIR-GVGFDAG-------------EVGLVNKTLGLLATIVGALYGGILMQRLSL 288 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333333333333344445432 2332211 122111122334567778999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHH----hhhhhhhhcCccchhhhccccCC
Q 012601 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL----LGFPLAITYSVPFAITAELTADS 385 (460)
Q Consensus 310 r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~Gi~~a~~~~vp~aLis~~~~~~ 385 (460)
|+...++.++.+++.+......... + + ...+.+...+ .|++.+.. +++..++.+++
T Consensus 289 ~~~l~i~~~l~~l~~l~~~~l~~~~-~------------~---~~~l~~~~~l~~~~~g~~~~~~----~a~~~~l~~~~ 348 (491)
T PRK11010 289 FRALMIFGILQGVSNAGYWLLSITD-K------------N---LYSMGAAVFFENLCGGMGTAAF----VALLMTLCNKS 348 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-c------------c---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 8887766555554443222221110 1 1 1222222222 34444443 56777777763
Q ss_pred CCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 386 ~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
..|++.|+.|....++.++++...|.+.+..|. ...|.+.+++++++.+...+.
T Consensus 349 --~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~--~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 349 --FSATQFALLSALSAVGRVYVGPVAGWFVEAHGW--PTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999998889999887763 347888898888887766443
No 24
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.65 E-value=4.6e-15 Score=156.54 Aligned_cols=344 Identities=13% Similarity=0.105 Sum_probs=235.5
Q ss_pred eehhHhhchhhHHhhhcCCcccccccCCCccchhHHHHHH---------------------HHHHhhcccccchhHHHHH
Q 012601 4 VAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIG---------------------FWLLDLANNTVQGPARALL 62 (460)
Q Consensus 4 i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v~~---------------------~~lld~a~n~~~~p~rA~i 62 (460)
++.++.+...++-..+.|.. ++||+|.++.++++ +++.+.+.+..+....||+
T Consensus 78 is~l~~all~P~lGa~aD~~------~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 78 ISGLLQALLAPFLGAIADYG------GRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHccc------ccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666678876 56667666544432 2456667788889999999
Q ss_pred hcCCCccch--------------------------hhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccc
Q 012601 63 ADLSGPDQR--------------------------NSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGN 116 (460)
Q Consensus 63 ~D~~p~~qr--------------------------~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~ 116 (460)
+|+++++.+ ++.+++--.+..+|+++..+++... . ..+ +.. ......
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~-~--~~~---~~~-~~~~~~ 224 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLL-V--ISP---GST-ASNTWA 224 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH-H--HcC---CCc-cccchh
Confidence 999999888 8999998888889998887766431 0 000 000 001235
Q ss_pred hhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhh
Q 012601 117 LKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLK 196 (460)
Q Consensus 117 ~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (460)
.|..+.++++-.++..+++.+.+||+|..+..+..
T Consensus 225 ~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~--------------------------------------------- 259 (477)
T PF11700_consen 225 IRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG--------------------------------------------- 259 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc---------------------------------------------
Confidence 79999999999888888999999998853211110
Q ss_pred hhcccccccCCCCCCCchhhHHHHHHH---hccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhh
Q 012601 197 HISKKAEDTNGSFNDGPGAVLVNLLTS---LRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVK 273 (460)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~s---~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~ 273 (460)
+ ...+..++++++. +++. |++.+.++..|+---|.+++..+...|..+ .++-++.
T Consensus 260 ----------~---~~~~~g~~~l~~t~k~~~~~-~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-~lg~s~~------- 317 (477)
T PF11700_consen 260 ----------S---SYLRFGFKRLWRTFKEIRKL-RQLFLFLIAYFLYSDGVNTIISFAGIYATE-VLGMSTT------- 317 (477)
T ss_pred ----------h---hHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCHH-------
Confidence 0 0122445555544 4444 345556777777777888888888877664 3444321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCch--hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcch
Q 012601 274 FYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR--LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQA 351 (460)
Q Consensus 274 ~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r--~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (460)
... ...++-.+++++.+++.+++.||+|.| ++..++.+...+..+ .+++.... + ..++ -
T Consensus 318 ------~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~-~g~~G~~~-~------~~g~----~ 378 (477)
T PF11700_consen 318 ------QLI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL-YGLFGFWP-S------FFGL----K 378 (477)
T ss_pred ------HHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-HHHHHhhh-c------ccCc----c
Confidence 111 133456668888999999999999999 787777666533222 11221000 0 0000 0
Q ss_pred hHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHH
Q 012601 352 IKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASL 431 (460)
Q Consensus 352 ~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v 431 (460)
..+..+++..+.|+..|..++..-++.+|..|+. +.|...|++++..-..-++.|+++|.+.+..|+. +..|..-.+
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g--~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~-r~g~~~l~~ 455 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG--REAEFFGLYAITGKASSWLGPLLFGLITDATGSQ-RYGFLFLLV 455 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHH
Confidence 2566788888999999999999999999999984 4599999999999999999999999999988753 456666666
Q ss_pred HHHHHHHHhhhccCCCCCC
Q 012601 432 SALAGGVVATLKLPHLSSN 450 (460)
Q Consensus 432 ~~lia~~~~~~~vpe~~~~ 450 (460)
+.+++.++ .+.|++.|||
T Consensus 456 lf~~gl~l-l~~v~~~~g~ 473 (477)
T PF11700_consen 456 LFLIGLIL-LFFVDVEKGR 473 (477)
T ss_pred HHHHHHHH-Hhhccchhhh
Confidence 66666664 4788888876
No 25
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.65 E-value=7e-15 Score=150.95 Aligned_cols=277 Identities=15% Similarity=0.097 Sum_probs=174.4
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHh
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~ 132 (460)
....+..+++.|..|+++|++++++......+|.++|+.+++. +.+. .+||..|.+.++..+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--l~~~-------------~~~~~~~~~~~~~~~~~~ 186 (408)
T PRK09874 122 GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL--LADS-------------YGLRPVFFITASVLFLCF 186 (408)
T ss_pred hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------------hCHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999888764 1111 258888888887776666
Q ss_pred hheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCC
Q 012601 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (460)
Q Consensus 133 ~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (460)
++..+.+||++....+ ++
T Consensus 187 ~~~~~~~~~~~~~~~~-~~------------------------------------------------------------- 204 (408)
T PRK09874 187 LVTLFCIRENFQPVSK-KE------------------------------------------------------------- 204 (408)
T ss_pred HHHHHHhccCcccccc-hh-------------------------------------------------------------
Confidence 6666667775421110 00
Q ss_pred chhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHH
Q 012601 213 PGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVV 292 (460)
Q Consensus 213 ~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~ 292 (460)
....++.++.+ +.|+.++.++...+....+...+..+.+.|+.+ ..+ +.. +.+...|. ...++++.
T Consensus 205 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~---------~~~~~~g~-~~~~~~l~ 270 (408)
T PRK09874 205 -MLHMREVVTSL-KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRE-LAG-NVS---------NIAFISGM-IASVPGVA 270 (408)
T ss_pred -hhHHHHHHHhC-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-cch---------HHHHHHHH-HHHHHHHH
Confidence 00112222222 223333333333333333333333333444432 111 110 01111121 22344556
Q ss_pred HHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcC
Q 012601 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (460)
Q Consensus 293 ~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (460)
..+...+.+++.||+|||+++.++..+.+++++...+.. + .+...+...+.|++.+....
T Consensus 271 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~~~~~~ 330 (408)
T PRK09874 271 ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ----T----------------PLQLGILRFLLGAADGALLP 330 (408)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHhhhHhhHH
Confidence 667778889999999999999988777666554433322 1 34455566678888887666
Q ss_pred ccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 373 vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
.-.+++.+..|+ +..|+.+|+.+....+++.+.+.+.|.+.+..|. .+.|.+.+++.+++++...+..
T Consensus 331 ~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~--~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 331 AVQTLLVYNSSN--QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGF--RAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHhCCc--ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666665 4569999999999999999999999988877763 4589999999998888766543
No 26
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.64 E-value=5e-15 Score=149.78 Aligned_cols=300 Identities=11% Similarity=0.044 Sum_probs=175.5
Q ss_pred Hhhch-hhHHhhhcCCcccccccCCCccchhHH------H--HHHH--------------HHHhhcccccchhHHHHHhc
Q 012601 8 IIGFS-ADIGYILGDTKEHCSKFRGTRTRAAFV------F--VIGF--------------WLLDLANNTVQGPARALLAD 64 (460)
Q Consensus 8 ~l~~~-~~ig~~l~d~~~~~~~~~~~~~~~i~~------~--v~~~--------------~lld~a~n~~~~p~rA~i~D 64 (460)
.+++. +.+...+.|+-. ..++++||+|.+.. . .+++ .+..++......+..++++|
T Consensus 32 ~~~~~~~~~~g~~~Dr~~-~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~ 110 (356)
T TIGR00901 32 GLPYSLKFLWSPLVDTVY-LPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLE 110 (356)
T ss_pred HHHHHHHHHHHHHHhccc-CCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 556666778752 23567888886431 1 1100 11223333334568999999
Q ss_pred CCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeeccCC
Q 012601 65 LSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPL 144 (460)
Q Consensus 65 ~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p~ 144 (460)
.+|+|+|++++++.+....+|.+++..++.. +...++ .+. .....||.+|.+.++..+++..+.++..||++.
T Consensus 111 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~--l~~~~g---~~~--~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 111 ILSDEELGYGSTIYIVGYRAGMLLSGSLALV--LASPEF---ANT--GLITLWGYIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred hCCHhhhchHHHHHHHHHHHHHHHHHHHHHH--Hhhhcc---ccc--ccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999999999999998877754 211111 000 001239999999999887777665555677431
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhHHHHHHHh
Q 012601 145 TVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSL 224 (460)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~ 224 (460)
.+.++++ ..+ ..+..++++++.
T Consensus 184 ~~~~~~~-------------------------------------------------~~~--------~~~~~~~~~~~~- 205 (356)
T TIGR00901 184 DASVPKP-------------------------------------------------LTQ--------AVLKPIREFFQR- 205 (356)
T ss_pred ccccchh-------------------------------------------------HHH--------HHHHHHHHHHHh-
Confidence 1100000 000 011233444432
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhHHHH
Q 012601 225 RHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNS-VVLGVSSFLIEPM 303 (460)
Q Consensus 225 ~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~s-i~~~l~s~i~~~l 303 (460)
+.+ +.++.+.+..++.+.+......+.+.|+.+ ++.+++ ..|. ....++ +..++..++.+++
T Consensus 206 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~-------------~~g~-~~~~~~~~~~~~g~~~~g~l 268 (356)
T TIGR00901 206 KNM-IQALLLLLLIVLYKLGDSAATVLTTLFLLD--MGFSKE-------------EIAL-VAKINGLLGAILGGLIGGII 268 (356)
T ss_pred cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHH-------------HHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 111 235555555666667766666677777654 332321 1222 222233 3456778889999
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhcccc
Q 012601 304 CRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTA 383 (460)
Q Consensus 304 ~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~ 383 (460)
.||+|+|+...++.++.+++.....+.....++ + + .+++ ..+.......+.+++.+..+..-.+++.|..|
T Consensus 269 ~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 339 (356)
T TIGR00901 269 MQPLNILYALLLFGIVQALTNAGFVWLASNGHH--D-G----ITFP--HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSN 339 (356)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc--c-c----cccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 999999999888887777665544433210000 0 0 0000 13444555566788888888888889999999
Q ss_pred CCCCCcccchhhhHHHHH
Q 012601 384 DSGGGQGLAIGVLNLAIV 401 (460)
Q Consensus 384 ~~~~~~G~~~Gi~n~~~~ 401 (460)
+ +.+|+++|++++...
T Consensus 340 ~--~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 340 P--KFGATQMALLSSLSA 355 (356)
T ss_pred C--CccHHHHHHHHHHHh
Confidence 7 456999999887653
No 27
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.64 E-value=1.6e-14 Score=150.72 Aligned_cols=296 Identities=11% Similarity=0.040 Sum_probs=162.2
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........++++|..|+++|+++.++.+.....|.+++..++.+ .....+ +... ....||.+|.++++
T Consensus 134 ~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~---~~~~--~~~gWr~~F~i~~~ 206 (432)
T PRK10406 134 QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV--LQQTLE---DAEL--REWGWRIPFALGAV 206 (432)
T ss_pred HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH--HHHhCC---HHHH--hccchHHHHHHHHH
Confidence 3444455566788999999999999999999888878888877765433 111110 0000 01379999999888
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.++...+ ....||+|.++.+ + .
T Consensus 207 ~~ll~~~~-~~~~~e~~~~~~~--~--------------------------------------------------~---- 229 (432)
T PRK10406 207 LAVVALWL-RRQLDETSQQETR--A--------------------------------------------------L---- 229 (432)
T ss_pred HHHHHHHH-HhcCCCCchHHHh--h--------------------------------------------------h----
Confidence 87655432 3345554421100 0 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHH-HHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL-TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~-~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~ 285 (460)
.+..+++++++. +..+.+++..++ ...+++.+..|.++|+.+. ++.++ + ..+ +.
T Consensus 230 -----~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-~g~s~----------~---~~~-~~ 284 (432)
T PRK10406 230 -----KEAGSLKGLWRN-----RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-AGMHA----------N---VAS-GI 284 (432)
T ss_pred -----cccccHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------H---HHH-HH
Confidence 011234555542 233334444333 3556666777778777542 22221 1 111 12
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
..+..+...+...+.+++.||+|||++..++.++.+++........... + .....+.++.+.++
T Consensus 285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~ 348 (432)
T PRK10406 285 MTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNV-S---------------SPYAAFGLVMCALL 348 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcC-C---------------cHHHHHHHHHHHHH
Confidence 3334445566677889999999999988766554433322111111000 0 01111222222222
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHH-HHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l-~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
..+....+..++++|..|.+ .+|+.+|+.|....+ .....+.+.+ +++..|.. ...+.+.+++.+++.+..++
T Consensus 349 ~~~~~~~~~~~~~~e~fp~~--~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~-~~~~~~~~~~~~i~~~~~~~-- 422 (432)
T PRK10406 349 IVSFYTSISGILKAEMFPAQ--VRALGVGLSYAVANALFGGSAEYVAL-SLKSIGME-TAFFWYVTLMAVVAFLVSLM-- 422 (432)
T ss_pred HHHHHHHHHHHHHHHHCCCC--ccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCC-cHHHHHHHHHHHHHHHHHHH--
Confidence 22222234456789999974 457788988765332 2334555555 44544543 34577777777777776543
Q ss_pred CCCCCCCcc
Q 012601 445 PHLSSNSFR 453 (460)
Q Consensus 445 pe~~~~~~~ 453 (460)
.|++||+-|
T Consensus 423 l~~~~~~~~ 431 (432)
T PRK10406 423 LHRKGKGMR 431 (432)
T ss_pred hhhcccccC
Confidence 567888876
No 28
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.64 E-value=4.5e-15 Score=148.83 Aligned_cols=261 Identities=15% Similarity=0.096 Sum_probs=170.4
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++......+..++++|.+|+++|++++++.+....+|.++|..+++. +.+. .+||..|.+.++
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~--l~~~-------------~g~~~~~~~~~~ 166 (365)
T TIGR00900 102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL--MYAT-------------LGIKWAIWVDAV 166 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHH-------------hhHHHHHHHHHH
Confidence 3445555566789999999999999999999999999999999988865 2111 268888888777
Q ss_pred HHHHHhhhee-EEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccccccc
Q 012601 127 FLTLCALVTI-YFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (460)
Q Consensus 127 ~~~i~~~itl-~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (460)
..+++.++.. +..||++.. ++++. + + +.+ +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~--~~~~~------------------~-------------------~--~~~-----~--- 197 (365)
T TIGR00900 167 GFAISALLIVSVRIPELAAS--EIQAL------------------S-------------------N--AVL-----R--- 197 (365)
T ss_pred HHHHHHHHHHhcccccCCCc--ccccc------------------c-------------------h--hHH-----H---
Confidence 6655543322 222222110 00000 0 0 000 0
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhh-hhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFF-LFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 206 ~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~-~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
+....++.+++ .+.++.+++..++.+....... .+.+.|..+ .++.++ . ..| +
T Consensus 198 ------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~----~~~-~ 251 (365)
T TIGR00900 198 ------DTREGIKFVLK-----NPLLRTLLLLALLFNLVFAPAIVALFPYVQSK-YLGRGS---------T----HYG-W 251 (365)
T ss_pred ------HHHhHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCch---------H----HHH-H
Confidence 01112222222 2455666666666665555544 455555443 233321 1 122 2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+..+++...+.+++.+++.||++||++...+..+.++++....+... +.+...+...+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g 312 (365)
T TIGR00900 252 VLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-------------------NFPLFLVLWFAIG 312 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-------------------hHHHHHHHHHHHH
Confidence 445567778888999999999999999998887777766654443320 1345566677889
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~ 418 (460)
++++.......+++.|..|+ +.+|+.+|+.|....+++.+.+.+.|.+.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 313 VGYGPINVPQGTLLQRRVPA--ELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998888888999999987 45699999999999999999999988887654
No 29
>PRK03545 putative arabinose transporter; Provisional
Probab=99.63 E-value=2.5e-14 Score=146.85 Aligned_cols=266 Identities=15% Similarity=0.114 Sum_probs=168.6
Q ss_pred chhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhh
Q 012601 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (460)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~i 134 (460)
..+..+++.|..|+|+|+++.++.+...++|..+|..++.. +.+. .+||++|.+.+++.++...+
T Consensus 115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~--l~~~-------------~gw~~~f~~~~~~~~l~~~~ 179 (390)
T PRK03545 115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRV--IGQY-------------LGWRTTFLAIGGGALITLLL 179 (390)
T ss_pred HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHH--HHHH-------------hcHHHHHHHHHHHHHHHHHH
Confidence 44577999999999999999999999999999999888764 2111 26999999988776655554
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCch
Q 012601 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (460)
Q Consensus 135 tl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (460)
.....||+|. + ++ +..
T Consensus 180 ~~~~~~~~~~---~-~~------------------------------------------------------------~~~ 195 (390)
T PRK03545 180 LIKLLPLLPS---E-HS------------------------------------------------------------GSL 195 (390)
T ss_pred HHHhCCCCCC---C-Cc------------------------------------------------------------chH
Confidence 4444555431 0 00 000
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 012601 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (460)
Q Consensus 215 ~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~ 294 (460)
..+++.+++ +.++..+...++...+.+....|.+.|..+ .++.+++ ..| +.+..+++...
T Consensus 196 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~-------------~~~-~~~~~~~~~~~ 255 (390)
T PRK03545 196 KSLPLLFRR-----PALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-VAGLSEN-------------FAT-LLLLLFGGAGI 255 (390)
T ss_pred HHHHHHHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcc-------------HHH-HHHHHHHHHHH
Confidence 112233332 234444444444444444444455555543 2333321 112 34455677788
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
+.+++.+++.||+|+|++. .+..+.++++....... + +.+...+...+.|++.+......
T Consensus 256 ~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~----~---------------~~~~~~~~~~l~g~~~~~~~~~~ 315 (390)
T PRK03545 256 IGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA----N---------------SEWHLSVLSIFWGIAIMCIGLAM 315 (390)
T ss_pred HHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh----c---------------hHHHHHHHHHHHHHHHhcchHHH
Confidence 8899999999999988754 44444444443222111 1 13444455666777766544444
Q ss_pred chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 375 ~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
.+.+.+..|+ ..|..+|+.+....+++.+.+++.|.+.+..|.. .+|.+.+++.+++.++..+.+
T Consensus 316 ~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 316 QVKVLKLAPD---ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS--SIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--HHHHHHHHHHHHHHHHHHHHc
Confidence 4556666553 4588899999999999999999999999888743 578888888888888766554
No 30
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.63 E-value=1.5e-14 Score=151.05 Aligned_cols=304 Identities=14% Similarity=0.088 Sum_probs=171.4
Q ss_pred hcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHH
Q 012601 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFL 128 (460)
Q Consensus 49 ~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~ 128 (460)
++......+..+++.|..|+++|+++.++.+...++|.+++..+++. +.+ ..+||+.|.+.+++.
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~--l~~-------------~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA--IAL-------------HYGWRYGMMIAGIIA 187 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------------cccHHHHHHHHHHHH
Confidence 33444456788999999999999999999999999999999876654 111 126999999877765
Q ss_pred HHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCC
Q 012601 129 TLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGS 208 (460)
Q Consensus 129 ~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (460)
++..++..+.+||+|.+...+...++ +.+. .+ .+ +..+
T Consensus 188 ~~~~~~~~~~~~~~p~~~~~~~~~~~----------------~~~~----------~~--------~~---~~~~----- 225 (434)
T PRK11663 188 IVVGLFLCWRLRDKPQAMGLPSVGEW----------------RHDA----------LE--------LA---QQQE----- 225 (434)
T ss_pred HHHHHHHHHHcCCCHhhcCCCCcccc----------------cccc----------cc--------cc---hhcc-----
Confidence 54444445567887643211100000 0000 00 00 0000
Q ss_pred CCCCchhhHHHHHHH-hccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 209 FNDGPGAVLVNLLTS-LRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 209 ~~~~~~~~~~~l~~s-~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
..+.+.++.++. ..+ .+.++.+.+..++.......+..+.+.|+.+ .++.++. ..+ ..+.
T Consensus 226 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~-------------~a~-~~~~ 286 (434)
T PRK11663 226 ---GAGLSRKEILTKYVLL-NPYIWLLSFSYVLVYVVRAAINDWGNLYMSE-TLGVDLV-------------TAN-SAVS 286 (434)
T ss_pred ---ccCCChhhhHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHH-------------HHH-HHHH
Confidence 001112333321 111 2334555555555555555566667777643 2333321 111 2445
Q ss_pred HHHHHHHHHHHhHHHHhhhc--Cch-hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWI--GSR-LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~ri--G~r-~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
++.+...+..++.+++.||+ ++| .......+.+.++...+..... + ......+.+...|
T Consensus 287 ~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~g 348 (434)
T PRK11663 287 MFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF---A---------------SYVMQAACFFTIG 348 (434)
T ss_pred HHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc---c---------------cHHHHHHHHHHHH
Confidence 56677888899999999998 333 3222221122222222121110 0 0111222222233
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
+.......+....++|+.|+ +.+|+.+|+.|++..+++.+.|..+|.+.+..|. ..+|.+.+++++++++.+.+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~--~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 349 FFVFGPQMLIGMAAAECSHK--EAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW--TGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHhhHHHHHHHHHHhcccH--hhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 32111111122356777765 4579999999999999999999999999988773 3578888888888887766666
Q ss_pred CCCCCC
Q 012601 445 PHLSSN 450 (460)
Q Consensus 445 pe~~~~ 450 (460)
++.+++
T Consensus 425 ~~~~~~ 430 (434)
T PRK11663 425 NAQAPR 430 (434)
T ss_pred hhhchh
Confidence 666654
No 31
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.59 E-value=3.4e-14 Score=141.15 Aligned_cols=255 Identities=20% Similarity=0.242 Sum_probs=195.9
Q ss_pred HHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHH
Q 012601 43 GFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFL 122 (460)
Q Consensus 43 ~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~ 122 (460)
+..+..++....+.+..+++.|..|+|+|++++++.+....+|..+|+.++... .+. .+||..|.
T Consensus 93 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~-------------~~~~~~~~ 157 (352)
T cd06174 93 GRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL--AES-------------LGWRWLFL 157 (352)
T ss_pred HHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHH-------------hhHHHHHH
Confidence 335566777888899999999999999999999999999999999999888651 111 25888888
Q ss_pred HHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccc
Q 012601 123 VAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKA 202 (460)
Q Consensus 123 i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (460)
+.+++.+++.++.. ..+
T Consensus 158 ~~~~~~~~~~~~~~-~~~-------------------------------------------------------------- 174 (352)
T cd06174 158 ILAILGLLLALLLL-FLL-------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHH-HHH--------------------------------------------------------------
Confidence 88777765554322 121
Q ss_pred cccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHH
Q 012601 203 EDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREG 282 (460)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G 282 (460)
|.++.+++..++.+.+...+..|.+.+..+ .++.++ . ..+
T Consensus 175 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~----~~~ 214 (352)
T cd06174 175 --------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQE-VLGLSA---------A----EAG 214 (352)
T ss_pred --------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCCH---------H----HHH
Confidence 234556777777788888888888887764 233321 1 112
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCchh-HHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHH
Q 012601 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRL-VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (460)
Q Consensus 283 ~~~l~~~si~~~l~s~i~~~l~~riG~r~-l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (460)
+....+++...+...+.+++.||+|||+ .+.++..+..+++....+.. + .+...+...
T Consensus 215 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~~~ 273 (352)
T cd06174 215 -LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP----S----------------LALLLVALL 273 (352)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHH
Confidence 3455677788889999999999999999 99999888888776655443 1 455667778
Q ss_pred HhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 362 ~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
+.|++.+.......+++.|..|+ +.+|+.+|+.+....+++.+.+.+.|.+.+..+. ...|.+.+++.+++.++.
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~--~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPP--EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY--GGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--chHHHHHHHHHHHHHHHh
Confidence 89999999999999999999987 4669999999999999999999999999876653 357888898888887754
No 32
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.59 E-value=6.1e-14 Score=146.53 Aligned_cols=301 Identities=12% Similarity=0.099 Sum_probs=172.3
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHh
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~ 132 (460)
..+.+..+++.|..|+++|++++++.+...++|+.++..+.... ... ..+||..|.+.+++.+++.
T Consensus 134 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~-~~~-------------~~~w~~~f~~~~~~~~i~~ 199 (438)
T TIGR00712 134 MGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG-MAW-------------FNDWHAALYFPAICAIIVA 199 (438)
T ss_pred cchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH-HHH-------------hhhhHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999888876544320 110 1269999999877766666
Q ss_pred hheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCC
Q 012601 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (460)
Q Consensus 133 ~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (460)
++..+.+||+|.....+..+ +.+.|.+ ++ .. + .+ + .
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~----------~~---~~---~-----~~---~----~ 235 (438)
T TIGR00712 200 LFAFAMMRDTPQSCGLPPIE----------------EYRNDYP----------DD---YN---E-----KA---E----Q 235 (438)
T ss_pred HHHHHhccCCHHhcCCCCch----------------hcccccc----------cc---cc---c-----cc---c----c
Confidence 66677788876432111100 0000000 00 00 0 00 0 0
Q ss_pred chhhHHHHHH-HhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHH
Q 012601 213 PGAVLVNLLT-SLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSV 291 (460)
Q Consensus 213 ~~~~~~~l~~-s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si 291 (460)
+ .+.++.+. ... -.+.++.+++..++...+++.+..|.+.|+.+ .++.++. ..| +.+..+++
T Consensus 236 ~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~-------------~~~-~~~~~~~~ 298 (438)
T TIGR00712 236 E-LTAKEIFMQYVL-PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKE-VKHFALD-------------KSS-WAYFLYEY 298 (438)
T ss_pred c-cchHHHHHHHHc-cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHH-ccCCChh-------------hHH-HHHHHHHH
Confidence 0 01222221 111 12456666777777777777788888888875 3333321 112 34456777
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh-hhh
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL-AIT 370 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~-a~~ 370 (460)
...+..++.+++.||+++++....+.....+..+........... +.+.........|+.. +..
T Consensus 299 ~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~ 363 (438)
T TIGR00712 299 AGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAG---------------NPLVDMICMIVIGFLIYGPV 363 (438)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCC---------------chHHHHHHHHHHHHHHccHH
Confidence 788889999999999965432223332222221111111100000 0122222223334321 111
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHHHH-HHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIP-QMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~-qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
.. ..+++.|..|+ +.+|+.+|+.|...+++ +++.+.+.|.+.+..|. ..+|.+..++.+++.+....++||.|
T Consensus 364 ~~-~~~~~~~~~~~--~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 364 ML-IGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HH-HHHHHHHhcCh--hheeeehhhhchHHHhhhhhhcchhHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11 11356677776 45688889999888776 67889999998887763 34777777777788887778889876
No 33
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.59 E-value=3.2e-14 Score=143.99 Aligned_cols=271 Identities=14% Similarity=0.045 Sum_probs=167.4
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++......+..+++.|..|+++|++..++.+....+|.+++..++... ..... +.. ....+||..|.+.++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~--~~~~~---~~~--~~~~~w~~~~~~~~~ 178 (394)
T TIGR00883 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL--SYLLG---DDA--LLEWGWRIPFLVSAV 178 (394)
T ss_pred HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH--HHhcC---HHH--hhccchHHHHHHHHH
Confidence 34444556667889999999999999999999999999999988776431 11110 000 001369999998887
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.+++..+ ....||+|..+.++++ .
T Consensus 179 ~~~~~~~~-~~~~~~~~~~~~~~~~--------------------------------------------------~---- 203 (394)
T TIGR00883 179 LVLIGLYL-RRNLEETPVFEKAQEK--------------------------------------------------H---- 203 (394)
T ss_pred HHHHHHHH-HHhcCCChhHHHHHhc--------------------------------------------------c----
Confidence 76655443 3445665422111000 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+ ..+...++.++. .++.++..+...++.+.+...+..|.+.|+.+ .++.++. ..+ ..+
T Consensus 204 ~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~~-~~~ 261 (394)
T TIGR00883 204 K----KKRGPIRETLTK---HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQ-TLGLSAN-------------SAL-LVL 261 (394)
T ss_pred c----cccCCHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChh-------------HHH-HHH
Confidence 0 011123333332 23345556666777777777777777777643 2332211 111 234
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHH-HHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACM-ATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
....+...+...+.+++.||+|||+.+..+..+.++.. ........ .+ ..+.......+.|+
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~g~ 324 (394)
T TIGR00883 262 MLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD--SG---------------SFTLFFFLVLGLAL 324 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--CC---------------chHHHHHHHHHHHH
Confidence 45666777888899999999999998775544433322 11111110 01 13444555666788
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhh-hHHHHHHHHHHHhhccccceecccC
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi-~n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
+.+.....-.+++.|..|++ .+|+.+|+ .+....+++.+.|.+.|.+.+..|.
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 325 IGGMYTGPMGSFLPELFPTE--VRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD 378 (394)
T ss_pred HHHHHhhhHHHHHHHhCCcc--ceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence 88777777888999999974 45777787 5677778999999999988887763
No 34
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.59 E-value=4.1e-14 Score=142.34 Aligned_cols=269 Identities=16% Similarity=0.110 Sum_probs=164.8
Q ss_pred cccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhh-cccccccccccccccccchhhccccchhHHHHHHHHHHHH
Q 012601 52 NTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGF-SAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTL 130 (460)
Q Consensus 52 n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy-~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i 130 (460)
.....+...++.|..| |+|+++.++.....++|.+++. +.+.+ .+ ...||+.|.+.+++.++
T Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-------------~~~~~~~f~~~~~~~~~ 168 (377)
T TIGR00890 106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSV---IN-------------LEGVPAAFIYMGIIFLL 168 (377)
T ss_pred HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHH---Hh-------------cccHHHHHHHHHHHHHH
Confidence 3333445566777665 6799999999888888877643 33322 11 12699999988877766
Q ss_pred HhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCC
Q 012601 131 CALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFN 210 (460)
Q Consensus 131 ~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (460)
..++..+.+||+|..+.++++ + .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~-----------------------------------------------~~------- 192 (377)
T TIGR00890 169 VIVLGAFLIGYPPGQLIKTNI--E-----------------------------------------------VS------- 192 (377)
T ss_pred HHHHHHHheecCchhccccCc--c-----------------------------------------------cc-------
Confidence 655555566665422111000 0 00
Q ss_pred CCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 012601 211 DGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNS 290 (460)
Q Consensus 211 ~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~s 290 (460)
......++.++ .+.++.+.+..++..+.......+.++|..+ ++.++ . ..+ +....++
T Consensus 193 -~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~--~~~-~~~~~~~ 250 (377)
T TIGR00890 193 -VKDYTVWEMLR-----TPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS--LGLSD-----------G--FLV-LAVSISS 250 (377)
T ss_pred -hhhhhHHHHHc-----CccHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCCCH-----------H--HHH-HHHHHHH
Confidence 00011222222 1233444444444433333333344444322 22110 0 111 2445677
Q ss_pred HHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhh
Q 012601 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (460)
Q Consensus 291 i~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (460)
+...+.+++.+++.||+|||+...++.++.+++++...+.... .....+....+.|++++..
T Consensus 251 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~g~~ 312 (377)
T TIGR00890 251 IFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML------------------NDVLFLATVALVFFTWGGT 312 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc------------------hhHHHHHHHHHHHHHhccc
Confidence 7788889999999999999999998888887776654443210 1222333445677777777
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHH
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~ 437 (460)
..+-.++++|..|++ .+|+.+|+.+....+++.+.+.+.|.+.+..|. ...|.+.+++++++.
T Consensus 313 ~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 313 ISLFPSLVSDIFGPA--NSAANYGFLYTAKAVAGIFGGLIASHALTEIGF--EYTFIVTGAFALTSL 375 (377)
T ss_pred hhccHHHHHHHhhhh--hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch--hhHHHHHHHHHHHhc
Confidence 666667889999874 568999999999999999999999998887763 357888887777654
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.59 E-value=1.2e-13 Score=140.11 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=162.7
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++......+..+++.|..|+++|++++++.+.+..+|..+|..+++. +.+. .+||.+|.+.
T Consensus 101 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~--l~~~-------------~~~~~~~~~~ 165 (385)
T TIGR00710 101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY--ILVW-------------LSWHAIFAFL 165 (385)
T ss_pred HHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------------cCHHHHHHHH
Confidence 445556666677889999999999999999999999999999999888764 2111 2588898887
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.+++.++..+..||++..+.+ .+ .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------------------------------------~~- 193 (385)
T TIGR00710 166 SLAGILLSALIFFILPETLPYEAR-IQ--------------------------------------------------IS- 193 (385)
T ss_pred HHHHHHHHHHHHHhCCCCCCCccc-CC--------------------------------------------------HH-
Confidence 777666666555666765421100 00 00
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
.....+++.++ - +.++...+..++.+.+++.+..+.+.++.+ .++.+++ ..| +
T Consensus 194 -------~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~g-~ 246 (385)
T TIGR00710 194 -------TYFETFLLLLK----S-KMFWGYALIYGASFGGFFAFFSGAPFVYID-IMGVSPS-------------VFG-L 246 (385)
T ss_pred -------HHHHHHHHHHc----C-chhHHHHHHHHHHHHHHHHHHHcChHHHHH-HcCCCHH-------------HHH-H
Confidence 01112222222 1 334455555566666677776666666543 2333321 122 2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+++...+..++.+++.||+|+|+....+..+++++.+.+.+......+ ......+...+.|
T Consensus 247 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~g 311 (385)
T TIGR00710 247 LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLG---------------SWAMIIGPMMFVG 311 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hHHHHHHHHHHHH
Confidence 3445667778889999999999999999888877777766554443211000 1334455566788
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAG 412 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g 412 (460)
++++.......+...|..|+ .+|+..|+.|...+..-.+.+...+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 312 IGNSMISSIAMAYALEDFPH---VAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777663 4688899998877653333333344
No 36
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.58 E-value=8.8e-14 Score=143.56 Aligned_cols=270 Identities=12% Similarity=0.041 Sum_probs=157.4
Q ss_pred hhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhe
Q 012601 56 GPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (460)
Q Consensus 56 ~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~it 135 (460)
.+..++++|..|+++|++++++.....++|.++|..++.. +.+. ..+||.+|.+.++..+++.+.
T Consensus 113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~--l~~~------------~~gw~~~f~i~a~~~l~~~l~- 177 (402)
T PRK11902 113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW--LADR------------VLGWGNTYLLMAGLMLAGALT- 177 (402)
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH--HHhc------------ccCHHHHHHHHHHHHHHHHHH-
Confidence 4689999999999999999999988778888887665543 1110 026999999977776655543
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchh
Q 012601 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (460)
Q Consensus 136 l~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (460)
.+.+||++..+.++++ ..+ ....
T Consensus 178 ~~~~~e~~~~~~~~~~-------------------------------------------------~~~--------~~~~ 200 (402)
T PRK11902 178 TLWAPEPEVPARPPRS-------------------------------------------------LGE--------AVVG 200 (402)
T ss_pred HHhcCCCcccccccch-------------------------------------------------hHH--------HHHH
Confidence 4567776532110000 000 0112
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHH-HHHH
Q 012601 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNS-VVLG 294 (460)
Q Consensus 216 ~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~s-i~~~ 294 (460)
.++++++. |.++.+++..++...+......+.+.++.+ .++.++ + ..|. .+...+ +..+
T Consensus 201 ~~~~l~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~~G~~~-----------~--~~g~-~~~~~~~~~~i 260 (402)
T PRK11902 201 PLRDFFSR-----RGAWALLLLIVLYKLGDAFAGSLSTTFLIR-GAGFSA-----------G--EVGI-VNKTLGLAATI 260 (402)
T ss_pred HHHHHHhC-----cCHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCCH-----------H--HHHH-HHhHHHHHHHH
Confidence 23333332 334544444444333322111122222222 122221 1 1221 222223 3456
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHH----HHhhhhhhhh
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF----TLLGFPLAIT 370 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Gi~~a~~ 370 (460)
+...+.+++.||+|+|+...++..+.+++.+......... + + .+.+.... ...|++++..
T Consensus 261 ~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~------------~---~~~~~~~~~~~~~~~g~~~~~~ 324 (402)
T PRK11902 261 VGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-K------------H---LWTMALAIGIENLCGGMGTAAF 324 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-C------------c---HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999988777666655543332222110 1 1 22222222 2456667766
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhh
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~ 441 (460)
......++.+..| +++.++++....+++++.+...|.+.+..|. ...|..++++++++.+..+
T Consensus 325 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~--~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 325 VALLMALCNRSFS------ATQYALLSALASVGRVYVGPTSGYLVEAYGW--PGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHhcCCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHH
Confidence 6666666666665 3466888888888998888888888888884 3579999998888877653
No 37
>PRK09848 glucuronide transporter; Provisional
Probab=99.57 E-value=8e-14 Score=146.01 Aligned_cols=304 Identities=15% Similarity=0.073 Sum_probs=180.2
Q ss_pred hhHhhchhhHHhhhcCCcccccccCCCccchhHHH-------HH-------------------HHHHHhhcccccchhHH
Q 012601 6 VIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVF-------VI-------------------GFWLLDLANNTVQGPAR 59 (460)
Q Consensus 6 ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~-------v~-------------------~~~lld~a~n~~~~p~r 59 (460)
-+.-+.++.+...+.|++ ++|++++|||.++.. ++ ...+...+....+.|..
T Consensus 54 ~~~~~~~~~~~G~l~Dr~--~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (448)
T PRK09848 54 RVFDAFADVFAGRVVDSV--NTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYG 131 (448)
T ss_pred HHHHHHhhhhheeeeecC--CCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHh
Confidence 344556777778889987 578899999953211 11 11223444555667888
Q ss_pred HHHhcCCCc-cchhhHHHHHHHHHHhh-hhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeE
Q 012601 60 ALLADLSGP-DQRNSANAIFCSWMAVG-NILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIY 137 (460)
Q Consensus 60 A~i~D~~p~-~qr~~a~~~~~~~~glG-~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~ 137 (460)
++..+++++ ++|.+.+++.+....+| ..++..++.+ ..... ++. ....+.....+.+++.+++.+++..
T Consensus 132 al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~--i~~~~---g~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 202 (448)
T PRK09848 132 SLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPS--IKNSS---PEE----MVSVYHFWTIVLAIAGMVLYFICFK 202 (448)
T ss_pred hhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhC---CCc----hhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 888888865 78888888776543332 2222222221 00000 000 0011222222333333344445555
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhhH
Q 012601 138 FADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVL 217 (460)
Q Consensus 138 ~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (460)
..||++..+ .++ ......+
T Consensus 203 ~~~e~~~~~--~~~-----------------------------------------------------------~~~~~~~ 221 (448)
T PRK09848 203 STRENVVRI--VAQ-----------------------------------------------------------PSLKISL 221 (448)
T ss_pred CcEeccCCC--ccC-----------------------------------------------------------CCHHHHH
Confidence 667764211 000 0011223
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012601 218 VNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSS 297 (460)
Q Consensus 218 ~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s 297 (460)
++++++ |+++.+++..++.+.++..+..+.+.|+. ++++.++ ..+.+.+....+..++.+
T Consensus 222 ~~l~~n-----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~--------------~~~~~~~~~~~~~~~~~~ 281 (448)
T PRK09848 222 QTLKRN-----RPLFMLCIGALCVLISTFAVSASSLFYVR-YVLNDTG--------------LFTVLVLVQNLVGTVASA 281 (448)
T ss_pred HHHhCC-----chHHHHHHHHHHHHHHHHHHhhhheeeEe-eecCChH--------------HHHHHHHHHHHHHHHHHH
Confidence 333332 45666777788888777776666555554 3444221 112122222344566678
Q ss_pred HhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchh
Q 012601 298 FLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAI 377 (460)
Q Consensus 298 ~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aL 377 (460)
.+.+++.||+|+|+++.+|.++.+++++.+.+... + +.+..++.+.+.|++.+.....+.++
T Consensus 282 ~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~---~---------------~~~~~~~~~~l~g~G~~~~~~~~~al 343 (448)
T PRK09848 282 PLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV---W---------------SLPVALVALAIASIGQGVTMTVMWAL 343 (448)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc---h---------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998888777665443220 1 13444555667889999899999999
Q ss_pred hhccccCC-----CCCcccchhhhHHHHHHHHHHHhhccccceeccc
Q 012601 378 TAELTADS-----GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (460)
Q Consensus 378 is~~~~~~-----~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g 419 (460)
+++..|.+ +|..|.+.|+.|.+.-+++.+.+.+.|.+++..|
T Consensus 344 ~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 344 EADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99887643 2456999999999999999999988888776555
No 38
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.57 E-value=1.8e-13 Score=141.55 Aligned_cols=274 Identities=12% Similarity=0.107 Sum_probs=165.3
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++....+.+..+++.|.+|+|+|++++++.+....+|..+|..+++.. .+ .+||+.|.+.++
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l--~~--------------~g~~~~f~~~~~ 172 (400)
T PRK11646 109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWL--LQ--------------YDFRLVCATGAV 172 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--------------hhHHHHHHHHHH
Confidence 34444445556789999999999999999999999999999999888752 11 258899998877
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
..+++.++..+..||++. ++.+ +
T Consensus 173 ~~~~~~i~~~~~~~~~~~---~~~~---------------------------------------------------~--- 195 (400)
T PRK11646 173 LFVLAAAFNAWLLPAYKL---STVR---------------------------------------------------T--- 195 (400)
T ss_pred HHHHHHHHHHHhCCcccc---cccc---------------------------------------------------h---
Confidence 765554444445555320 0000 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
..+..++++++. | .++..++..+..+........+.+.|+.+ ..+ ++. ..|. .+
T Consensus 196 -----~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~-------------~~g~-l~ 249 (400)
T PRK11646 196 -----PVREGMTRVLRD----K-RFVTYVLTLTGYYMLAVQVMLMLPIMVND-IAG-SPS-------------AVKW-MY 249 (400)
T ss_pred -----hhHHHHHHHHcC----c-hHHHHHHHHHHHHHHHHHHHHhhhhhHHh-hcC-Cch-------------HHHH-HH
Confidence 011223333322 2 23333333333232222333455555543 222 211 1221 23
Q ss_pred HHHHHHHHHHHHhHHHHh-hhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 287 LLNSVVLGVSSFLIEPMC-RWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~-~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
.+.++.......+..++. ||++.++....+.++++++++.+.+.. + .+...+...++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----~----------------~~~~~~~~~l~~~ 309 (400)
T PRK11646 250 AIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----N----------------LQQLFTLICLFYI 309 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHHH
Confidence 334444444444455555 556767666777777777665444332 1 2333444456777
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccC--ccchhHhHHHHHHHHHHHHhh
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG--GNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~--~~~~~f~~~~v~~lia~~~~~ 441 (460)
+.+.....-.+++.+..|+ +.+|+.+|+.|....+++.+++.+.|.+.+..++ ....++...+++++++.+...
T Consensus 310 g~~~~~p~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 310 GSIIAEPARETLSASLADA--RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHHHccHHHHHHhcCCc--ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence 7776666656788888886 4668999999999999999999999999876532 112457777777777766543
No 39
>PRK12382 putative transporter; Provisional
Probab=99.57 E-value=8.2e-14 Score=142.90 Aligned_cols=136 Identities=17% Similarity=0.088 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
+..+++...+..++.+++.||+|+|+....+..+++++++...+.. + .+..++...+.|+
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~ 314 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP----T----------------AWVALAGAALTGA 314 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc----c----------------HHHHHHHHHHHHH
Confidence 3446666677788999999999999999988888877765544332 1 3444556667888
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
+.+.....-.+.+.+..|+ +.+|+.+|+.++...+++.+.+...|.+.+..|. ...|.+.+++.+++.+..+++.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPS--QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY--PSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred HHHhHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHHhhcc
Confidence 8876555444566777775 4579999999999999999999999999887773 35789999988888887665543
No 40
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.57 E-value=3.2e-14 Score=145.14 Aligned_cols=280 Identities=9% Similarity=0.037 Sum_probs=158.8
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........+++.|..|+++|++++++.+...++|.++|..++.. ..+. .+.+||+.|.+.++
T Consensus 110 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~--l~~~-----------~~~~w~~~f~~~~~ 176 (405)
T TIGR00891 110 IGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL--VVPV-----------WGDGWRALFFISIL 176 (405)
T ss_pred HHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-----------cCccHHHHHHHHHH
Confidence 4445556667789999999999999999999999999999999877754 1111 12359999998887
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.+++.. .....||++.++.+++++++.. ...++...++ .
T Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------------------------~----- 216 (405)
T TIGR00891 177 PIIFALW-LRKNIPEAEDWKEKHAGKALVR--------TMVDILYGGE--------------------------H----- 216 (405)
T ss_pred HHHHHHH-HHHhCCCChhHHHHhhhhhhhh--------hHHHHHhccc--------------------------h-----
Confidence 7765544 3556787654321111100000 0000000000 0
Q ss_pred CCCCCCchhhHHHHHHHhcc----CCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRH----LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREG 282 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~----mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G 282 (460)
..+...++....++. ....+..+++..++..........+++.|+.++ ++.++ + ..+
T Consensus 217 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----------~---~~~ 277 (405)
T TIGR00891 217 -----RIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-LGLSP----------H---TVA 277 (405)
T ss_pred -----hhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hCCCH----------H---HHH
Confidence 000001111111111 111122222222222222233344455555431 22221 0 112
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHH
Q 012601 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (460)
Q Consensus 283 ~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (460)
+....+++...+..++.+++.||+|||+.+.++....++......... + +.+...+.+.+
T Consensus 278 -~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~ 337 (405)
T TIGR00891 278 -NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG----A---------------NVAVLGLGLFF 337 (405)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC----C---------------chHHHHHHHHH
Confidence 234456777888899999999999999998887665433222111111 1 12223333344
Q ss_pred hhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccC
Q 012601 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 363 ~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
.|+..+....+-.+++.|..|+ +.+|+.+|+.+....++..+.+.+.|.+.+..|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPT--DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE 393 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCc--chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555444555556788999987 4569999999999999999999999999988874
No 41
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.56 E-value=1.9e-13 Score=140.77 Aligned_cols=266 Identities=12% Similarity=0.106 Sum_probs=155.5
Q ss_pred HHHHHhcCCCccchh--hHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhe
Q 012601 58 ARALLADLSGPDQRN--SANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (460)
Q Consensus 58 ~rA~i~D~~p~~qr~--~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~it 135 (460)
..+++.|..|+++|. ..+++.+...++|.++|..+++. +.+. .+||..|.+.++..+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~--l~~~-------------~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYA--LAMG-------------FSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHH--HHHh-------------cChHHHHHHHHHHHHHHHHHH
Confidence 456677776665553 34578888889999999888865 2211 269999998887766666666
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchh
Q 012601 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (460)
Q Consensus 136 l~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (460)
.+.+||.|..+.++++ .. + ..
T Consensus 191 ~~~~~~~~~~~~~~~~-------------------------------------------------~~----~----~~-- 211 (393)
T PRK15011 191 WLFLPSMRKELPLATG-------------------------------------------------TL----E----AP-- 211 (393)
T ss_pred HhhcCccCCCCccccc-------------------------------------------------cc----c----cc--
Confidence 6678886522110000 00 0 00
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012601 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (460)
Q Consensus 216 ~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l 295 (460)
++.++..+......++.|.....+..+.+.|..+ .++.++ . ..|. ......+..++
T Consensus 212 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~~~~~---------~----~~g~-~~~~~~~~~i~ 267 (393)
T PRK15011 212 ---------RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIIN-ELHLPE---------K----LAGV-MMGTAAGLEIP 267 (393)
T ss_pred ---------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCH---------H----HHHH-HHHHHHHHHHH
Confidence 0112222233333444454444444455555543 233321 1 1221 22333445666
Q ss_pred HHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccc
Q 012601 296 SSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPF 375 (460)
Q Consensus 296 ~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~ 375 (460)
..++.+++.||+|||++...+.....+.+....... + ....++...+.++.++.....-.
T Consensus 268 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 268 TMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH----S----------------PAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh----h----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988776655444333222111 1 22233333444444443333333
Q ss_pred hhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 376 AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 376 aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
+.+.|..|+ .+|+.+|+.+....+++.+.+.+.|.+.+..|. ..+|.+.+++.+++.+.. +.+||+
T Consensus 328 ~~~~~~~p~---~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~--~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (393)
T PRK15011 328 LYFQDLMPG---QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNY--HAVFWFALVMIIATLFCL-LRIKDV 393 (393)
T ss_pred HHHHHhCCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHH-HhhcCC
Confidence 456777774 368899999999999999999999988887663 346788888777766654 555764
No 42
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.56 E-value=3.6e-14 Score=146.21 Aligned_cols=284 Identities=8% Similarity=0.051 Sum_probs=178.5
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+.-++.........+++.|..| ++|++++++++....+|..+|..++.. +.+. ..+||..+.+.
T Consensus 105 ~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~--l~~~------------~~~w~~~~~~~ 169 (393)
T PRK09705 105 LLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPW--LVQH------------SETWYQTLAWW 169 (393)
T ss_pred HHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHH--HHHh------------cCCHHHHHHHH
Confidence 44455555566677888999876 889999999999888898888877753 1111 12577776654
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
++..++.....+...+++|. ++++ + +
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~---~~~~--~-----------------------------------------------~-- 195 (393)
T PRK09705 170 ALPAVVALFAWWWQSAREVA---SSHK--T-----------------------------------------------T-- 195 (393)
T ss_pred HHHHHHHHHHHHHHhcCCCc---cccC--C-----------------------------------------------C--
Confidence 44443333322222222221 0000 0 0
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
. .. ++.++ . +..+.+++..++...+++.+..|.+.|+.+ ++.++. ..| .
T Consensus 196 --~----~~----~~~l~----~-~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s~~-------------~ag-~ 244 (393)
T PRK09705 196 --T----TP----VRVVF----T-PRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGASAQ-------------YSG-S 244 (393)
T ss_pred --c----CC----ccccc----C-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChh-------------hhh-H
Confidence 0 00 00011 1 223445555555666777777788888764 333321 112 2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+.++++..++..++.+++.||+|||++..++..+.+++++++..... + .... ...+.|
T Consensus 245 ~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~---~----------------~~~~--~~~l~g 303 (393)
T PRK09705 245 LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL---Q----------------LPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc---h----------------HHHH--HHHHHH
Confidence 445677788888999999999999999998887776666554332220 0 1111 123356
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+...+...+...+..+++ +..|+..|+.+....+.+.+.|...|.+.+..|+++ ..|.+.+++.+++.++.+.+.
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQP-AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYL-MDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HhccchHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHHHHhc
Confidence 666655555445555666432 456889999999999999999999999999888653 568888888888877777889
Q ss_pred CCCCCCC
Q 012601 445 PHLSSNS 451 (460)
Q Consensus 445 pe~~~~~ 451 (460)
|||+.|-
T Consensus 382 ~~~~~~~ 388 (393)
T PRK09705 382 PARFPQL 388 (393)
T ss_pred cccccch
Confidence 9999874
No 43
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.56 E-value=1.4e-13 Score=144.57 Aligned_cols=300 Identities=12% Similarity=0.108 Sum_probs=169.6
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhh-hhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHH
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGN-ILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLC 131 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~-ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~ 131 (460)
....+..+.+.|..|+++|+++.++.+...++|+ +.+++++....+ ..+||+.|.+.+++.++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---------------~~gw~~~f~i~~~~~~~~ 200 (452)
T PRK11273 136 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---------------FNDWHAALYMPAFAAILV 200 (452)
T ss_pred ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------------hccHHHHHHHHHHHHHHH
Confidence 3445577889999999999999999988888876 456654322101 026899999987776666
Q ss_pred hhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCC
Q 012601 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFND 211 (460)
Q Consensus 132 ~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (460)
.++..+.+||+|.....+.+ ++. +.+. ++ ..+++ +
T Consensus 201 ~~l~~~~~~~~~~~~~~~~~-~~~---------------~~~~---------------~~---------~~~~~-~---- 235 (452)
T PRK11273 201 ALFAFAMMRDTPQSCGLPPI-EEY---------------KNDY---------------PD---------DYNEK-H---- 235 (452)
T ss_pred HHHHHHHccCCHhhcCCCCh-hhh---------------hhcc---------------cc---------ccccc-c----
Confidence 66667778887643111100 000 0000 00 00000 0
Q ss_pred CchhhHHHHHH-HhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 012601 212 GPGAVLVNLLT-SLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNS 290 (460)
Q Consensus 212 ~~~~~~~~l~~-s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~s 290 (460)
..+.+.++.+. .+.+ .+.++.+++..++....++.+..|.+.|+.++ ++-++. ..+ +.+.+++
T Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-~g~s~~-------------~~~-~~~~~~~ 299 (452)
T PRK11273 236 EQELTAKQIFMQYVLP-NKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-KHFALD-------------KSS-WAYFLYE 299 (452)
T ss_pred CCCccHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH-------------HHH-HHHHHHH
Confidence 00011223221 1111 24566677777777777777788888888652 332210 112 2344566
Q ss_pred HHHHHHHHhHHHHhhhc--CchhHH-HHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 291 VVLGVSSFLIEPMCRWI--GSRLVW-AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 291 i~~~l~s~i~~~l~~ri--G~r~l~-~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
+..++..++.+++.||+ +||+.. +....+.+++++...+... + +.....+.+..+|...
T Consensus 300 ~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~g~~~ 361 (452)
T PRK11273 300 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA---G---------------NPTVDMACMIVIGFLI 361 (452)
T ss_pred HHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc---c---------------ChHHHHHHHHHHHHHH
Confidence 67777889999999999 555432 2222333333222211110 0 1222222233334332
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHH-HhhccccceecccCccchhHhHHHHHHHHHHHHhhhc-cC
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMI-VSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK-LP 445 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil-~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~-vp 445 (460)
........+++.|+.|+ +.+|+.+|+.+....++..+ .+.+.|.+.+..|. ...|.+.+++++++++++..+ .+
T Consensus 362 ~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~--~~~f~~~~~~~~~~~~~~~~~~~~ 437 (452)
T PRK11273 362 YGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAVILLIVVMIG 437 (452)
T ss_pred HhHHHHHHHHHHHHcCh--hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 21111123456788886 45688999999988888765 58888888888873 357888888888888777644 56
Q ss_pred CCCCC
Q 012601 446 HLSSN 450 (460)
Q Consensus 446 e~~~~ 450 (460)
|.|.+
T Consensus 438 ~~~~~ 442 (452)
T PRK11273 438 EKRHH 442 (452)
T ss_pred ccchH
Confidence 66643
No 44
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.56 E-value=4.1e-14 Score=142.44 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=165.0
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhh-cccccccccccccccccchhhccccchhHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGF-SAGASGSWHRWFPFLTSRACCAACGNLKAAFLV 123 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy-~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i 123 (460)
.+..++......+..+++.|..|+++|+++.++.+....+|..++. +++.. ..+ ..+||..|.+
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~~~-------------~~~~~~~~~~ 155 (379)
T TIGR00881 91 ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFG--IAE-------------LYSWHWVFIV 155 (379)
T ss_pred HHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHH--HHh-------------cCCchhHHHH
Confidence 4455666677788999999999999999999999999999999988 45433 111 1268888888
Q ss_pred HHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccccc
Q 012601 124 AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAE 203 (460)
Q Consensus 124 ~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (460)
.+++.++..++.++..||+|.....+..+++.. + +.+ .++.+ ..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~--------------------~~~~~----~~~ 200 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN---E--------EPD--------------------GDAEK----KEE 200 (379)
T ss_pred HHHHHHHHHHHHheeeCCCccccccCccccCcc---c--------ccc--------------------ccccc----ccc
Confidence 777666666666777888764321111000000 0 000 00000 000
Q ss_pred ccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHH
Q 012601 204 DTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (460)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~ 283 (460)
+ ....+...+++++ .+.++.+++..++.+.+...+..|.+.|+.+ .++.++. ..+
T Consensus 201 ---~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~~- 255 (379)
T TIGR00881 201 ---E--LTKKQIFLQYVLL-----NKVLWYISLGYVFVYVVRTGILDWSPLYLTQ-EKGFSKE-------------KAS- 255 (379)
T ss_pred ---c--ccchHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHH-------------HHH-
Confidence 0 0001111222332 2356667777888887777777788877754 2333221 111
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+.+..+++...+..++.+++.||..+|+.........+............... +.....+.....
T Consensus 256 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 320 (379)
T TIGR00881 256 WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAA---------------NPLMDLICLFAL 320 (379)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcch---------------hHHHHHHHHHHH
Confidence 34455677778889999999998644332222222222211111111100000 123333444455
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g 419 (460)
|+.......+..+++.|..|+ +.+|+..|+.|....+++.+.+.+.|.+.+..|
T Consensus 321 g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 321 GFLVYGPQMLIGVIASELAPK--KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHhhhhHHHHHHHHHhcCc--chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 654444444445678888887 456999999999999999999999999888766
No 45
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.55 E-value=4.5e-13 Score=136.22 Aligned_cols=287 Identities=14% Similarity=0.082 Sum_probs=162.6
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++......+..+++.|..|+|+|+++.++.+....+|..++..++.. +.+. .+||..|.+.
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--l~~~-------------~~~~~~~~~~ 151 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGW--LLVW-------------FSWHAIFWVL 151 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------------cChHHHHHHH
Confidence 334555555666788999999999999999999999999999999888754 1111 2588999888
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.++..++..+..||++..+++++. + .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-----------------------------~~-- 181 (377)
T PRK11102 152 ALAAILAAALVFFFIPETLPKERRQPF-------------------H-----------------------------LR-- 181 (377)
T ss_pred HHHHHHHHHHHHHhCCccCcccccCCC-------------------C-----------------------------hH--
Confidence 777766666666677776421100000 0 00
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
.....++++++ . +.++..++..++.+.+.+.+..+.+.+..+ .++.+++ ..| +
T Consensus 182 -------~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~-------------~~g-~ 234 (377)
T PRK11102 182 -------TTIRNFASLFR----H-KRVLGYMLASGFSFAGMFSFLTAGPFVYIE-LNGVSPQ-------------NFG-Y 234 (377)
T ss_pred -------HHHHHHHHHHc----C-hHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-HhCCCHH-------------HHH-H
Confidence 01112223332 2 334455666777777777766665554433 2332210 122 2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+..++.+++.||+|+|+++.++..+..++.+......... . ..+...+....++
T Consensus 235 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~ 298 (377)
T PRK11102 235 YFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-L---------------GFWALVVGVAAFV 298 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-h---------------hHHHHHHHHHHHH
Confidence 34556777888899999999999999999888766544332222221100 0 1222333333344
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHH-HHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAI-VIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~-~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
.+.+.......+.+.|..|+ ..|...++.|... .+++++.++..+... . .....+...+++.+++.++.++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~g~~~g~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (377)
T PRK11102 299 GCVSMISSNAMAVILDEFPH---MAGTASSLAGTLRFGIGAIVGALLSLAPF---T-SAWPMVWSMAFCSILSILFYLYA 371 (377)
T ss_pred HHHHHhhHHHHHHHhccccc---cchHHHHHHHHHHHHHHHHHHHHHHhccC---C-ChHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444455665553 4577778877653 466666655432211 1 12223444455555555544444
Q ss_pred cCC
Q 012601 444 LPH 446 (460)
Q Consensus 444 vpe 446 (460)
.++
T Consensus 372 ~~~ 374 (377)
T PRK11102 372 SRP 374 (377)
T ss_pred ccc
Confidence 443
No 46
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.6e-13 Score=137.09 Aligned_cols=277 Identities=18% Similarity=0.166 Sum_probs=197.2
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+.-++.....+-.-++.+|++||+||+++.++...=..+..++|-=+|.+ ..++ -+||..|.+.
T Consensus 109 ~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~--ig~~-------------~GWR~~F~~i 173 (394)
T COG2814 109 ALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF--LGQL-------------FGWRATFLAI 173 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH--HHHH-------------hhHHHHHHHH
Confidence 556666677777888999999999999999999966666666666655543 2222 2699999999
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+.+.+++++.....+| |....++
T Consensus 174 a~l~ll~~~~~~~~lP--~~~~~~~------------------------------------------------------- 196 (394)
T COG2814 174 AVLALLALLLLWKLLP--PSEISGS------------------------------------------------------- 196 (394)
T ss_pred HHHHHHHHHHHHHhCC--CccCCCC-------------------------------------------------------
Confidence 9999999988888888 2111110
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
...++++.++.++ .+.++...+..++...|.|....|..+|+.| +.+-++ +. -++
T Consensus 197 --------~~~~~~~~~~~l~--~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~-v~g~s~-----------~~---vs~ 251 (394)
T COG2814 197 --------LPGPLRTLLRLLR--RPGVLLGLLATFLFMTGHFALYTYIRPFLES-VAGFSV-----------SA---VSL 251 (394)
T ss_pred --------CCcchhHHHHHhc--CchHHHHHHHHHHHHcchhhhHHhHHHHHHH-ccCCCH-----------hH---HHH
Confidence 0011222233221 2345666788888888999999999998875 444432 22 247
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.++.|++..++.+.+.+++.|| +.|+.......+++++++.+.+.. + +.+..++...+.|
T Consensus 252 ~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~----~---------------~~~~~~~~~~~wg 311 (394)
T COG2814 252 VLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG----A---------------SPALALALLFLWG 311 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc----c---------------hHHHHHHHHHHHH
Confidence 8899999999999999999999 999999988888888777655544 1 1444555555566
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
+...... -.+..+..+...+..+..+++.+.+..++..+.+.++|.+++..|. ....++++++.+++.++....
T Consensus 312 ~a~~~~~---~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~--~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 312 FAFSPAL---QGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGY--AATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHhhhhh---hHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHH
Confidence 6555433 3344444442224568888999999999999999999999988663 357999999999888876544
No 47
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.54 E-value=4.9e-13 Score=137.94 Aligned_cols=293 Identities=12% Similarity=0.033 Sum_probs=171.9
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........++++|.+|+|+|++++++.+....+|.++|..+++.. .++ .++..+.+.+.
T Consensus 98 ~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l--~~~--------------~~~~~~~i~~~ 161 (393)
T PRK11195 98 VGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL--ADP--------------HAEAALAVCAL 161 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--------------HHHHHHHHHHH
Confidence 34444445556789999999999999999999999999999999999762 111 25566666655
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
..+++. +..+.+||+|.++.+++. +. .. ..+
T Consensus 162 ~~~~~~-~~~~~l~~~~~~~~~~~~--~~-------------------------------------~~------~~~--- 192 (393)
T PRK11195 162 IYLLAA-LFNLFIPRLGARRPGQSW--NP-------------------------------------IA------LLR--- 192 (393)
T ss_pred HHHHHH-HHHhcCCCCcccccccCC--CH-------------------------------------HH------HHH---
Confidence 544443 334567886532111000 00 00 000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
..+..++.+++ -| .++...+..++.|.......+..+.|+.+ .++.++. ..| +.+
T Consensus 193 -----~~~~~~~~l~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lg~s~~-------------~~G-~~~ 247 (393)
T PRK11195 193 -----DFFHACRVLWR----DK-LGRFSLAGTTLFWGAGATLRFLVLAWAPV-ALGITLN-------------QPA-YLQ 247 (393)
T ss_pred -----HHHHHHHHHHh----Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChh-------------HHH-HHH
Confidence 00111222222 22 23333333344465555555555566643 4554431 123 245
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
..+++..++.+++.+++.||.++|++...+. +.++.+....+.. + .+...+.+.+.|++
T Consensus 248 ~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~----~----------------~~~~~~~~~~~G~~ 306 (393)
T PRK11195 248 AVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQH----S----------------LLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHh----H----------------HHHHHHHHHHHHHh
Confidence 5677778888999999999999988887774 3344333222221 1 33444555567887
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhh-hccC
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT-LKLP 445 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~-~~vp 445 (460)
.+.....-.+++.+. ++++.+.|...|+.|+...+++.+...+++.+ +..|- .+.+.+.++..+++..... +.-.
T Consensus 307 ~g~~~~~~~~~~q~~-~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK11195 307 GGFFVVPMNALLQHR-GHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGV--PVVAVIVGFGLLVALAMALLWRWH 382 (393)
T ss_pred hhhhhhhHHHHHHhh-CcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654334454443 43323469999999999999999999887754 44443 3456665555555555444 3356
Q ss_pred CCCCCCccC
Q 012601 446 HLSSNSFRS 454 (460)
Q Consensus 446 e~~~~~~~~ 454 (460)
|.+-|-|.|
T Consensus 383 ~~~~~~~~~ 391 (393)
T PRK11195 383 RRNQRQFDS 391 (393)
T ss_pred HhccccccC
Confidence 777777765
No 48
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.54 E-value=1.9e-13 Score=158.87 Aligned_cols=300 Identities=14% Similarity=0.099 Sum_probs=176.0
Q ss_pred hhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHH
Q 012601 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (460)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~ 127 (460)
-++......+..++++|.+|+++|++++++++....+|.++|+.+++.. ...+. ....... ..+.+.+.+..+.
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l--~~~~~---~~~~~~~-~~~~~~~~~~~~~ 187 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL--FESVN---GNTPSEI-LGRIAPAGLVLLA 187 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH--HHhhc---ccccccc-ccchHHHHHHHHH
Confidence 3344445556789999999999999999999999999999999998752 11100 0000000 1233333333333
Q ss_pred HHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 012601 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (460)
Q Consensus 128 ~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (460)
..+..++..+.+||.|.......+++ . .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~----~ 215 (1146)
T PRK08633 188 VAVLGLIFAYRLPKVPAAAPEVFDKK------------------------------------------------K----Y 215 (1146)
T ss_pred HHHHHHHHHhcCcCCCCCCccccccc------------------------------------------------c----c
Confidence 33333344556787763321110000 0 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 208 ~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
......++-++.+++ .+.++...+..++.|...+.+..+++.|+.+ .++.++ ....| +.+.
T Consensus 216 ----~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~------------~~~~g-~~~~ 276 (1146)
T PRK08633 216 ----LFPKLLWRNLKLLRS-DRVLWLAIIGLSYFWFISQLAQANFPAYAKE-VLGLDN------------TFQVQ-YLLA 276 (1146)
T ss_pred ----ccHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HhCCCc------------HHHHH-HHHH
Confidence 000111222222222 2344555555666666666666666666653 233321 10122 2445
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
.+.+..++.+++.+++.||+++|+++.++.++++++++.+.+.. + .+..++.+.++|++.
T Consensus 277 ~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 277 ASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP----S----------------LASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHHHHH
Confidence 56667788899999999999999988888887777665554432 1 445556667788888
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
+.....-.+++.+..|+ +.+|+.+|+.|+...++.++.+.+.+.+.. .+......|.+.+.+.++..++..+.+|++
T Consensus 337 ~~~~~~~~~~~~~~~p~--~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPE--KELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413 (1146)
T ss_pred HHhhHHHHHHHhhcCCc--cchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 87777777888888886 456889999999999998777765544332 222222346666655555555444445543
No 49
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.54 E-value=3.6e-13 Score=138.37 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
+..+.+...+..++.+++.||+|+|+....+..+.++++....+.. + .+..++...+.|+
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~G~ 314 (399)
T PRK05122 255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP----S----------------PWMALIGAALTGF 314 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHH
Confidence 3455666677788899999999999999888888777766554432 1 3344555667888
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
+.+.....-.+.+.+..|+ +.+|+.+|+++....+++.+.+.+.|.+.+..|. ...|.+.+++.+++.++.. ..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~-~~~ 389 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPP--QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGY--PSIFLAAALAALLGLALTW-LLY 389 (399)
T ss_pred hHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHH-Hhc
Confidence 8876654444566677775 4579999999999999999999888888877663 3578888888888776654 444
Q ss_pred CCCCC
Q 012601 446 HLSSN 450 (460)
Q Consensus 446 e~~~~ 450 (460)
+.++|
T Consensus 390 ~~~~~ 394 (399)
T PRK05122 390 RRAPR 394 (399)
T ss_pred ccccc
Confidence 44444
No 50
>PRK15075 citrate-proton symporter; Provisional
Probab=99.54 E-value=2.5e-13 Score=141.76 Aligned_cols=261 Identities=12% Similarity=0.077 Sum_probs=141.3
Q ss_pred chhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhh
Q 012601 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (460)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~i 134 (460)
..+..++++|..|+++|+++.++.+....+|..+|..++... ...+. +.. ....+||+.|.+.++...+.. +
T Consensus 135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l--~~~~~---~~~--~~~~gWr~~f~~~~~~~~~~~-~ 206 (434)
T PRK15075 135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL--NQWLS---PAQ--MAEWGWRIPFLIGCLIVPFIF-L 206 (434)
T ss_pred HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH--HHhCC---HHH--HhccchHHHHHHHHHHHHHHH-H
Confidence 445789999999999999999999888777777776666531 11110 000 001379999998665442222 1
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCch
Q 012601 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (460)
Q Consensus 135 tl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (460)
.....||++....+ + .+ + ..+
T Consensus 207 ~~~~~~e~~~~~~~-~---------------------------------------------------~~---~----~~~ 227 (434)
T PRK15075 207 IRRSLEETEEFLAR-K---------------------------------------------------HR---P----SMR 227 (434)
T ss_pred HHHhcCCCHHHHHh-h---------------------------------------------------hc---c----ccc
Confidence 11111221100000 0 00 0 001
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 012601 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (460)
Q Consensus 215 ~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~ 294 (460)
..++++.+. ++.....++..++...+++.+..|.++|+.+ .++-++ ++ .+ +....+++..+
T Consensus 228 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~~~----------~~---~~-~~~~~~~~~~~ 288 (434)
T PRK15075 228 EIFRSLAAN----WRIVLAGMLMVAMTTVSFYLITVYTPTFGKT-VLHLSA----------AD---SL-LVTLCVGVSNF 288 (434)
T ss_pred cHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH----------HH---HH-HHHHHHHHHHH
Confidence 112222221 1222222444455566677778888888764 233321 11 11 23455667778
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHH-HHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCc
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMA-TTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (460)
+.+.+.+++.||+|||+++..+.++.++... ....... + + ..........+.|++++.....
T Consensus 289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~------------~--~~~~~~~~~~~~~~~~g~~~~~ 351 (434)
T PRK15075 289 IWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA---A------------P--SFARMLAVELWLSFLYGSYNGA 351 (434)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc---C------------C--chHHHHHHHHHHHHHHHHHHhh
Confidence 8889999999999999998876544332111 1111110 1 0 0111222233345555555555
Q ss_pred cchhhhccccCCCCCcccchhhh-HHHHHHHHHHHhhccccceecccC
Q 012601 374 PFAITAELTADSGGGQGLAIGVL-NLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 374 p~aLis~~~~~~~~~~G~~~Gi~-n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
.+++++|..|++ .+|+.+|+. |+...+...+.|.+.|.+.+..|.
T Consensus 352 ~~~~~~e~~p~~--~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 352 MVVALTEVMPAE--VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHCCCC--ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 557889999975 447777885 444444456688888888887774
No 51
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.54 E-value=8.1e-13 Score=136.45 Aligned_cols=176 Identities=14% Similarity=0.029 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
.++..++..++...+.+.+..|.+.|+.+ ++.++. + .+ +.+....+...+.+.+.+++.||+||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~----------~---~~-~~~~~~~~~~~ig~~~~g~l~dr~~~ 286 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVAE--LGFSTS----------E---WL-QIWGTFFFTNIVFNVIFGIVGDKLGW 286 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChh----------H---HH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555666677767777888888888754 333321 1 11 23334566778889999999999999
Q ss_pred hhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCC
Q 012601 310 RLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (460)
Q Consensus 310 r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~ 388 (460)
|+... .+.+..+++............+ +.+...+...+.|++.+..... .+++.+..|+ .
T Consensus 287 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~---~ 347 (402)
T TIGR00897 287 MNTVRWFGGVGCGIFTLALYYIPQHFGH---------------SFAVALIIAIALGIFLAGYVPL-AAVFPTLAPK---H 347 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccCC---------------cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcc---h
Confidence 88764 3333333332222222110001 1333445556677776654332 3455565443 4
Q ss_pred cccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012601 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 389 ~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
+|+.+|+.|....+++.+.|.+.|.+++..|. ..+|++.+++.+++++...+
T Consensus 348 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~--~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 348 KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA--IGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999988774 35788888888887776544
No 52
>TIGR00895 2A0115 benzoate transport.
Probab=99.53 E-value=6.2e-14 Score=142.30 Aligned_cols=284 Identities=12% Similarity=0.020 Sum_probs=166.8
Q ss_pred HHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHH
Q 012601 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLV 123 (460)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i 123 (460)
..+..++......+..+++.|..|+++|++++++.+....+|..+|..+++.. .+. .+||..|.+
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--~~~-------------~g~~~~~~~ 176 (398)
T TIGR00895 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL--IPV-------------FGWRSLFYV 176 (398)
T ss_pred HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH--hhc-------------ccceeehhh
Confidence 35566677777888999999999999999999999999999999998877541 111 257778887
Q ss_pred HHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccccc
Q 012601 124 AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAE 203 (460)
Q Consensus 124 ~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (460)
.++..+++.++..+..||++....++++ ++. .+..++...+.. ++.++.. .+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~--------------~~~~~~~-----~~ 228 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESIDFLVSKRP-ETV--------RRIVNAIAPQMQ--------------AEAQSAL-----PE 228 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCChHHHhcCH-HHH--------HHHHHHHHHhcc--------------ccccccc-----cc
Confidence 7655545555556678887643222111 000 000000000000 0000000 00
Q ss_pred ccCCCCCCCchhhHHHHHHHhccC--CHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHH
Q 012601 204 DTNGSFNDGPGAVLVNLLTSLRHL--PPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVRE 281 (460)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~s~~~m--P~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~ 281 (460)
+ +......++.++.+++. .+....+++..++...+.+....|.+.+..+ ++.+++ ..
T Consensus 229 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~-------------~~ 287 (398)
T TIGR00895 229 ---Q---KATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE--LGFSLS-------------LA 287 (398)
T ss_pred ---c---ccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHH-------------HH
Confidence 0 00001112223322221 1223334455555566666655566643322 222211 11
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHH
Q 012601 282 GAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (460)
Q Consensus 282 G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (460)
+ +.....++...+..++.+++.||+|+|++..... +.+++........ + +.....+...
T Consensus 288 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~---------------~~~~~~~~~~ 346 (398)
T TIGR00895 288 A-TGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTL----F---------------SPTLLLLLGA 346 (398)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHh----h---------------CHHHHHHHHH
Confidence 2 2445566778888999999999999995544433 3333222222211 1 1344556667
Q ss_pred HhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccc
Q 012601 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW 414 (460)
Q Consensus 362 ~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l 414 (460)
+.|++++......+++++|..|+ +.+|+.+|+.+....+++.+.|.+.|.+
T Consensus 347 ~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 347 IAGFFVNGGQSGLYALMALFYPT--AIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 78999998888899999999987 4568899999999999999999887765
No 53
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.53 E-value=4.7e-13 Score=138.94 Aligned_cols=305 Identities=11% Similarity=0.032 Sum_probs=170.4
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
.-++.........+++.|..|+++|+++.++.+...++|.++|+.+++.. .+... ..+ ..+||++|.+.++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~-~~~------~~gwr~~f~~~~~ 176 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI--LALDG-LMA------LKGWQWLFLLEGF 176 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCC-CCC------ccchhHHHHHHHH
Confidence 34444444445668899999999999999999999999999999887641 11000 000 1379999999877
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.++...+..+.+||+|....- .. ++++ +...+..+.+.. +.++++ +
T Consensus 177 ~~l~~~~~~~~~~~~~p~~~~~-l~-~~~~-------~~~~~~~~~~~~---------------~~~~~~------~--- 223 (412)
T TIGR02332 177 PSVILGVMTWFWLDDSPDKAKW-LD-EEDK-------KALKEMIDNDQL---------------TLEQPE------G--- 223 (412)
T ss_pred HHHHHHHHHhhccCCCcccCCC-CC-HHHH-------HHHHHHHHhccc---------------cccccc------c---
Confidence 7766555667778998842100 00 0000 000000000000 000000 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+. .......++.++.++ .+.++...+..++...+++.+..|.+.|+.+..++-++ ...| ...
T Consensus 224 ~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~-------------~~~~-~~~ 285 (412)
T TIGR02332 224 AF--AHAAMPQRSMLREIF--TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSN-------------IMIG-LLA 285 (412)
T ss_pred cc--ccccccHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-------------HHhH-HHh
Confidence 00 000111123344443 23466667777777778888888899988652111111 1222 234
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHH-HHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVW-AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~-~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
....+...+..++.+++.||+++|+.. +....+.+++++...... + ....+..+.+.++
T Consensus 286 ~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~~~ 345 (412)
T TIGR02332 286 AIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATD----H----------------NLIQLLGIIMASM 345 (412)
T ss_pred hHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcC----C----------------HHHHHHHHHHHHH
Confidence 556667778889999999999987753 344444433322111110 1 1111111222233
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHH
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSAL 434 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~l 434 (460)
+......+.+....|..|. +.+|+.+|+.|....+++++.|.+.|.+.+..|+. .+.|.+++++.+
T Consensus 346 g~~~~~~~~~~~~~~~~~~--~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~-~~~~~~~~~~~~ 411 (412)
T TIGR02332 346 GSFSAMAIFWTTPDQSISL--QARAIAIAVINATGNIGSALSPFLIGILKDATGSF-NSGLWFVAALLV 411 (412)
T ss_pred HhhhhhhHHHhhcccccch--HHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC-chhHHHHHHHHh
Confidence 3322222223344566665 45788999999999999999999999999888754 346666655443
No 54
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.53 E-value=6.5e-13 Score=136.22 Aligned_cols=262 Identities=15% Similarity=0.047 Sum_probs=151.5
Q ss_pred hhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHH
Q 012601 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (460)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~ 127 (460)
.++......+..+++.|..|+++|+++.++.+....+|.+++..++... .+ ...||..|.+.+++
T Consensus 102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l--~~-------------~~g~~~~~~~~~~~ 166 (392)
T PRK10473 102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI--ML-------------KFPWQSLFYTMAAM 166 (392)
T ss_pred HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-------------CcChHHHHHHHHHH
Confidence 3444455667889999999999999999999999999999888877541 11 12588888888777
Q ss_pred HHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 012601 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (460)
Q Consensus 128 ~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (460)
.+++.++..+..||++... +++ + .
T Consensus 167 ~~i~~~~~~~~~~~~~~~~--~~~--~-----------------------------------------------~----- 190 (392)
T PRK10473 167 GILVLLLSLFILKETRPAR--APA--A-----------------------------------------------S----- 190 (392)
T ss_pred HHHHHHHHHHHcCCCCCcc--cCC--c-----------------------------------------------c-----
Confidence 7666666666778764211 000 0 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 208 ~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
......++.++. +.++..++..++.+.+...+..+.+.++.+ .++.++ + ..| ..+.
T Consensus 191 ----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-----------~--~~~-~~~~ 246 (392)
T PRK10473 191 ----SKPRENSESLLN-----RFFLSRLVITTLSVTVILTFVNTSPVLLME-QMGFSR-----------G--EYA-IIMA 246 (392)
T ss_pred ----chHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HcCCCH-----------H--HHH-HHHH
Confidence 000111222221 233333444455555555555444444432 222221 0 122 2445
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
.+++...+..++.+++.||+|+|+.+.++..+.+++++.+.+... .......+.+.+.+.
T Consensus 247 ~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~g~ 306 (392)
T PRK10473 247 LTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS--------------------HAVSLFGITLICAGF 306 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Confidence 567778888999999999999999999998887777665554331 111222222333333
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHH
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSA 433 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~ 433 (460)
+..... ....+..|.+ ++. |..+....++|.+.+.+.+.+.+..|.. ......+.+.
T Consensus 307 ~~~~~~--~~~~~~~~~~-~~~----g~~~~~~~~~~~~g~~~~~~l~~~~g~~--~~~~~~~~~~ 363 (392)
T PRK10473 307 SVGFGV--AMSQALGPFS-LRA----GVASSTLGIAQVCGSSLWIWLAAVLGIS--AWNMLIGILI 363 (392)
T ss_pred HHHhHH--HHHHHhccCc-ccc----cHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHH
Confidence 322222 2223344432 333 5555566788888888877777766642 2334444433
No 55
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.52 E-value=6.2e-13 Score=137.25 Aligned_cols=270 Identities=16% Similarity=0.119 Sum_probs=166.2
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........+++.|..|+++|++++++.....++|.++|..++.. +.+. .+||+.|.+.++
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~--l~~~-------------~gw~~~f~~~~~ 182 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSF--LGEL-------------IGWRNVFNAAAV 182 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh-------------cCHHHHHHHHHH
Confidence 4455556667789999999999999999999999999999999988875 2211 258999998877
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.+++.++.....||+|. ++++
T Consensus 183 l~~~~~l~~~~~~p~~~~---~~~~------------------------------------------------------- 204 (394)
T PRK10213 183 MGVLCIFWIIKSLPSLPG---EPSH------------------------------------------------------- 204 (394)
T ss_pred HHHHHHHHHHHHCCCCCc---cccc-------------------------------------------------------
Confidence 666555443334565431 0000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhc-cccccceeecCCCCCCChhhhhHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFD-TDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~-t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~ 285 (460)
.....++.++ .+.++...+..++...+.+.+..|. +.|..+ ++.+++ ..| +.
T Consensus 205 ------~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~-------------~~g-~~ 257 (394)
T PRK10213 205 ------QKQNTFRLLQ-----RPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL--AGFGVD-------------GLT-LV 257 (394)
T ss_pred ------chhHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChh-------------HHH-HH
Confidence 0011122222 1344444444444444444444454 333322 332321 122 24
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
+..+++...+.+++.+++.||.+ |+.+..+..+..++.+...... + +.+...+...+.|+
T Consensus 258 ~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~----~---------------~~~~~~~~~~l~G~ 317 (394)
T PRK10213 258 LLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG----S---------------DKIVATGVAIIWGL 317 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh----h---------------hHHHHHHHHHHHHH
Confidence 45566777888899999999954 4444444444333322222221 1 13445556677888
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhh
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~ 441 (460)
+++..+..--+++.+..|+ ..+...++......+++.+.+.++|.+.+..|.. ..+..+++..++.++.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~ 388 (394)
T PRK10213 318 TFALVPVGWSTWITRSLAD---QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT--SPLMLSGTLMLLTALLVT 388 (394)
T ss_pred HHHhhhHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--hHHHHHHHHHHHHHHHHH
Confidence 8887777666677887774 2456667777888899999999999999887743 467777766666665543
No 56
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.51 E-value=6.2e-13 Score=136.32 Aligned_cols=273 Identities=16% Similarity=0.133 Sum_probs=160.2
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........+++.|..|+++|+++.++......+|..+|..++.. ..+ ..+||+.|.+.++
T Consensus 101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~--l~~-------------~~gwr~~f~~~~~ 165 (382)
T PRK10091 101 SGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY--LSQ-------------EFSWRYTFLLIAV 165 (382)
T ss_pred HHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH--Hhh-------------hccHHHHHHHHHH
Confidence 3344444455667889999999999999999988888999988877653 111 1269999999887
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.++..+...+..||.+. ++++
T Consensus 166 ~~~~~~~~~~~~lp~~~~---~~~~------------------------------------------------------- 187 (382)
T PRK10091 166 FNIAVLASIYFWVPDIRD---EAKG------------------------------------------------------- 187 (382)
T ss_pred HHHHHHHHHHHhCCCCCc---cccc-------------------------------------------------------
Confidence 766555554555676431 0000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
..+.. ++.++ -| ..+......++...+.+....|.+.|+.+ .++.+++ ..+ +..
T Consensus 188 -----~~~~~----~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~-------------~~~-~~~ 241 (382)
T PRK10091 188 -----GLREQ----FHFLR-SP-APWLIFAATMFGNAGVFAWFSYIKPYMMF-ISGFSET-------------SMT-FIM 241 (382)
T ss_pred -----CHHHH----HHHhc-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH-------------HHH-HHH
Confidence 00011 11111 11 22333334444444554444455555543 2333321 112 345
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
..+++...+..++.+++.||+|+|++...+..+++++++.+.... + +.+...+...+.+++
T Consensus 242 ~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~----~---------------~~~~~~~~~~~~~~g 302 (382)
T PRK10091 242 MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG----G---------------MKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH----h---------------hHHHHHHHHHHHHHH
Confidence 567777888899999999999999999988888887765444332 1 022233333344444
Q ss_pred hhhhcCccc-hhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012601 367 LAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 367 ~a~~~~vp~-aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
......... .+..+..++ +..|. +..+....+++.+.|...|.+.+..++. .+++.+.++.++++..+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~g~~~Gp~~~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGG--ELLGA--AGGQIAFNLGSAIGAYCGGMMLTLGLAY-NYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHhhhHHHHHHHHHhCCcc--hHHHH--HHHHHHHHHHHHHHHHHhHHHHHcccCc-chHHHHHHHHHHHHHHHHHH
Confidence 432222111 223333222 33444 3457788999999999999998865543 35677777666665554433
No 57
>PRK10054 putative transporter; Provisional
Probab=99.50 E-value=2.2e-13 Score=140.68 Aligned_cols=270 Identities=10% Similarity=0.027 Sum_probs=163.9
Q ss_pred hHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhee
Q 012601 57 PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTI 136 (460)
Q Consensus 57 p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl 136 (460)
...+++.|..|+++|++++++.....++|..+|..+++. +.+ .+|+..|.+.++..+++.++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~--l~~--------------~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 116 VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL--LVM--------------QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--------------hccCcHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999999999999999988865 211 1477888888777766655444
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhh
Q 012601 137 YFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAV 216 (460)
Q Consensus 137 ~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (460)
+.+||.+..+ ++++ .....
T Consensus 180 ~~~~~~~~~~-~~~~------------------------------------------------------------~~~~~ 198 (395)
T PRK10054 180 IWVQRSEKAI-ATET------------------------------------------------------------GSVWS 198 (395)
T ss_pred HHHhcccccc-ccch------------------------------------------------------------hhhhh
Confidence 4455543111 0000 00000
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012601 217 LVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVS 296 (460)
Q Consensus 217 ~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~ 296 (460)
.++.++ . |.++.+.+..++...+...+..+.+.|... ..+.+ .++. ..| +.+..+++.....
T Consensus 199 ~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~-~~g-~~~~~~~~~~~~~ 260 (395)
T PRK10054 199 PSVLLQ----D-KALLWFTCSGFLASFVSGAFASCISQYVMV-VADSD----------FAEK-VVA-VVLPVNAAMVVSL 260 (395)
T ss_pred hhhhcc----C-ceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hcccc----------hHHH-HHH-HHHHhhhhheeee
Confidence 111121 1 233444455555444443333333444321 11110 1111 122 2344455544455
Q ss_pred HHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccch
Q 012601 297 SFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFA 376 (460)
Q Consensus 297 s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~a 376 (460)
....+++.||.++|+....+..+++++++...+.. + +.+...+...++|++.+.....-++
T Consensus 261 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~g~~~~~p~~~~ 321 (395)
T PRK10054 261 QYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----N---------------SLLLWGMSAAVFTVGEIIYAPGEYM 321 (395)
T ss_pred hhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----h---------------HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 67788999999999998888877777665444322 1 1333444556777777665556567
Q ss_pred hhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 377 ITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 377 Lis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
++.+..|++ ..|.+.|+.+ ..++++.+.|..+|.+.+..|.. ..|.+.+++..++.++..+.+.
T Consensus 322 ~~~~~~p~~--~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ 385 (395)
T PRK10054 322 LIDHIAPPG--MKASYFSAQS-LGWLGAAINPLVSGVILTTLPPW--SLFVILALAIVAAWLLMLKGMR 385 (395)
T ss_pred HHHHhCCcc--cceehHhHHH-HHHHHHHHHHHHHHHHHHHcChh--hHHHHHHHHHHHHHHHHHhccc
Confidence 888888863 5588888766 56789999999999999988632 3666666665555555544333
No 58
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.50 E-value=5.9e-13 Score=137.85 Aligned_cols=294 Identities=14% Similarity=0.094 Sum_probs=159.8
Q ss_pred HHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHH
Q 012601 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (460)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~ 125 (460)
+..++.........+++.|..|+++|++++++.+...++|.+++..+... +.+ ..+||+.|.+..
T Consensus 115 l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~--l~~-------------~~~w~~~f~i~~ 179 (426)
T PRK12307 115 IVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS--FAE-------------AYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH--Hcc-------------cCCHHHHHHHHH
Confidence 34455556667789999999999999999999999999999988765543 111 126999998876
Q ss_pred HHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccccccc
Q 012601 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (460)
Q Consensus 126 i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (460)
++.++.+.+ ....||++.++.++.+ + +.+ ..+
T Consensus 180 ~~~~~~~~~-~~~~p~~~~~~~~~~~--~--------------~~~-----------------------------~~~-- 211 (426)
T PRK12307 180 LPVLLVIYI-RARAPESKEWEEAKLS--G--------------KGK-----------------------------HSQ-- 211 (426)
T ss_pred HHHHHHHHH-HHHCCCChHHHHhhhh--c--------------ccc-----------------------------ccc--
Confidence 655433221 1122333211100000 0 000 000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHH---HHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHH
Q 012601 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHV---VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREG 282 (460)
Q Consensus 206 ~~~~~~~~~~~~~~l~~s~~~mP~~l~~---l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G 282 (460)
+ ........++++++. | .++. .+...++.+.+.+.+..+.++|+.+. +.++. ..+
T Consensus 212 -~-~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~-------------~~~ 269 (426)
T PRK12307 212 -S-AWSVFSLSMKGLFNR----A-QFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE--GFDTG-------------VVS 269 (426)
T ss_pred -c-chhhhhHHHHHHHhh----c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHH-------------HHH
Confidence 0 000011123344432 2 2222 12223333333334455666666542 22210 112
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHH
Q 012601 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (460)
Q Consensus 283 ~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (460)
..+..+++...+..++.+++.||+|||+++..+.++.++.++....... + + ... +....
T Consensus 270 -~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------~---~~~--~~~~~ 328 (426)
T PRK12307 270 -NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ---D------------N---YLL--LGACL 328 (426)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc---c------------c---HHH--HHHHH
Confidence 2345566778888999999999999999998887766554443332220 0 0 111 11122
Q ss_pred hhhhhh--hhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 363 LGFPLA--ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 363 ~Gi~~a--~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
+|++.. ....+..+++.|..|+ +.+|+.+|+.+....+++.+.|.+.|.+.+..|.. ...+...++.+.++....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~ 405 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPL--EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG-AALTFIVAFWTATILLII 405 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcH--HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHHhhc
Confidence 222211 1112233577888887 45688999999999999999999999888777632 122333333333333333
Q ss_pred hhccCCCC
Q 012601 441 TLKLPHLS 448 (460)
Q Consensus 441 ~~~vpe~~ 448 (460)
.+..||..
T Consensus 406 ~~~~~~~~ 413 (426)
T PRK12307 406 GLSIPDRL 413 (426)
T ss_pred cccCChhh
Confidence 34567653
No 59
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.48 E-value=5.5e-13 Score=140.55 Aligned_cols=298 Identities=9% Similarity=0.086 Sum_probs=171.3
Q ss_pred cccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHH
Q 012601 50 ANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT 129 (460)
Q Consensus 50 a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~ 129 (460)
+......+..+++.|..|+++|+++.++.+...++|.+++..+.... +... ...+||..|.+.+++.+
T Consensus 135 ~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~-~~~~-----------~~~~~~~~f~~~g~~~~ 202 (467)
T PRK09556 135 FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG-ANYF-----------FDGHVIGMFIFPSIIAL 202 (467)
T ss_pred HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH-HHhh-----------ccCcchhHHHHHHHHHH
Confidence 33444556778999999999999999999999999999987765421 1111 01257888877665554
Q ss_pred HHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCC
Q 012601 130 LCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSF 209 (460)
Q Consensus 130 i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (460)
+..++..+.+||+|........ +. ..++ ... ++ + + ..+
T Consensus 203 ~~~i~~~~~~~~~p~~~~~~~~--~~--~~~~-------~~~-~~-------------------~-~----~~~------ 240 (467)
T PRK09556 203 IIGFIGLRYGSDSPEELGWGKA--EE--IFGE-------PIS-EE-------------------D-K----ETE------ 240 (467)
T ss_pred HHHHHHHHhCCCChhhcCCCCh--hh--cccC-------ccc-hh-------------------h-h----ccc------
Confidence 4444445556766532111000 00 0000 000 00 0 0 000
Q ss_pred CCCchhhHHHHH-HHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHH
Q 012601 210 NDGPGAVLVNLL-TSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL 288 (460)
Q Consensus 210 ~~~~~~~~~~l~-~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~ 288 (460)
..+.+.++.+ +...+ .+.++.+++..++...++..+..+.+.|+.+ .++-++. ..+ +.+..
T Consensus 241 --~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~-~~g~s~~-------------~a~-~~~~~ 302 (467)
T PRK09556 241 --STDMTKWQIFVEYVLK-NPVIWLLCFANIFLYIVRIGIDNWSPVYAFQ-ELGFSKE-------------DAI-NTFTL 302 (467)
T ss_pred --cccCcHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHH-------------HHH-HHHHH
Confidence 0001112211 11111 2456777777777777777777788888764 4554421 112 24445
Q ss_pred HHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh-h
Q 012601 289 NSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP-L 367 (460)
Q Consensus 289 ~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~ 367 (460)
..+...+..++.+++.||+|||+....+..+.+++.....+.. . + +.....+...++|+. .
T Consensus 303 ~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~--~-~---------------~~~~~~~~~~~~G~~~~ 364 (467)
T PRK09556 303 FEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH--A-T---------------SEYMYLASLFALGFLVF 364 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh--c-C---------------cHHHHHHHHHHHHHHHh
Confidence 6667888899999999999999877665444433222111111 0 1 122333344445543 2
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHH-HHHHHhhcccccee------------cccCccchhHhHHHHHHH
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDA------------LFGGGNIPAFVLASLSAL 434 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l-~qil~~~~~g~l~~------------~~g~~~~~~f~~~~v~~l 434 (460)
+... ..++.+.|..|+ +..|+..|+.|...++ +..+.+.+.|.+.+ ..| +...|.+.+++.+
T Consensus 365 ~~~~-~~~~~~~~~~p~--~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~--~~~~f~~~~~~~~ 439 (467)
T PRK09556 365 GPQL-LIGVAAVGFVPK--KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG--WAGTFAALDIAAI 439 (467)
T ss_pred hHHH-HHHHHHHhhcch--hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC--hHHHHHHHHHHHH
Confidence 3222 223456688886 4679999999999886 77899999999888 333 3456877777777
Q ss_pred HHHHHhhh
Q 012601 435 AGGVVATL 442 (460)
Q Consensus 435 ia~~~~~~ 442 (460)
++.++..+
T Consensus 440 ~~~~~~~~ 447 (467)
T PRK09556 440 GCICLMAI 447 (467)
T ss_pred HHHHHHHH
Confidence 77666543
No 60
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.48 E-value=5.7e-13 Score=133.09 Aligned_cols=260 Identities=20% Similarity=0.298 Sum_probs=165.8
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++.........+++.|..|+|+|++++++.+...++|.++|..+++.. .+. .+||+.|.+.
T Consensus 93 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l--~~~-------------~~~~~~~~~~ 157 (352)
T PF07690_consen 93 FLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFL--ISY-------------FGWRWAFLIS 157 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCH-------------CHHCCHHHHH
T ss_pred cccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhh--hhc-------------cccccccccc
Confidence 4455555667778999999999999999999999999999999999888752 111 2588999998
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
+++.+++.++..+..+|+|....++++.++. +. ..+
T Consensus 158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~-----~~~- 193 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPPPPRERESPKESE--------------------------------------SK-----KPK- 193 (352)
T ss_dssp HHHHHHHHHHHHCCC---STTTT--SSTTTT---------------------------------------------HHH-
T ss_pred cchhhhhhhhHhhhhhhcccccccccccccc--------------------------------------cc-----ccc-
Confidence 8888777665445566655332221110000 00 000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
...+.++.+++. +.++.+.+..+...+.+..+..|.+.|+.+ .++.+ +.....+
T Consensus 194 -------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-------------~~~~~~~ 247 (352)
T PF07690_consen 194 -------PLKPGFKSLFKN-----PVLWILLIAFFLFFFVFSGFSFFLPLYLQE-VLGFS-------------GPSQAGL 247 (352)
T ss_dssp -------CCCH-CTHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHCC-------------THHHHHH
T ss_pred -------cccccccccccc-----chhhhhhhhhhHHHHHHHHhhcccchhhhh-ccCCC-------------HHHHHHH
Confidence 011112333332 222333444444445666667777776443 33332 0111112
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+.+.++...+.+++.+++.||+++|+...+......++.+...+.... + +....++.+.+.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~g 310 (352)
T PF07690_consen 248 LFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--S---------------SPVWLIIALFLIG 310 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH--C---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--h---------------hHHHHHHHHHHHH
Confidence 3455666777779999999999999877777666666555444433311 0 1344555677799
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHh
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVS 408 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~ 408 (460)
++.+.....-.+++.+..|+ +.+|+.+|+.+....++.+++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 311 FGFGIVFPILFSLIQELVPP--EYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHCHHHHHHHHCCCHT--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHCC
Confidence 99998888888999999987 5679999999999999998875
No 61
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.48 E-value=1.8e-12 Score=133.03 Aligned_cols=178 Identities=11% Similarity=-0.008 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhhhcC
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSV-VLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si-~~~l~s~i~~~l~~riG 308 (460)
.++..+...++...+......|.+.|+.|. +.++ + ..|. ......+ ...+..++.+++.||+|
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--G~s~-----------~--~ig~-~~~~~~~~~~~~g~~~~g~l~~r~g 272 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVDA--GWPL-----------E--WIGR-LGMAGGAVTVLLGCGGGAWLVRRAG 272 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHhc--CCCH-----------H--HHHH-HHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 355556666666666666666667776652 2221 1 1222 2223333 34445788999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCC
Q 012601 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~ 388 (460)
+|+...++..+.++..+......... .. + .....+....+.++..+.....-++.+.++.+++ +.
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~ 337 (390)
T TIGR02718 273 LWRTFILGVGLAGSLALLWFAQAAFW-----------LA-P--GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG-DQ 337 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc-----------cC-C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cc
Confidence 99998887766533322222111000 00 0 1222233333444555555555555666666542 56
Q ss_pred cccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 389 ~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
.|+++++.|....++.++.+.+.|.+.+..|. ...|.+++++++++.+..
T Consensus 338 ~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~--~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 338 AGTDVTAVQSTRDLGELIASSIAGYLTDRFGY--AGGFLSGTVLAVLAILLA 387 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999888774 347888888888876654
No 62
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.47 E-value=9.2e-13 Score=153.35 Aligned_cols=295 Identities=14% Similarity=0.018 Sum_probs=178.8
Q ss_pred hhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHH
Q 012601 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (460)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~ 127 (460)
.++.........++++|..|+++|++++++.+...++|.++|..++++. ... ..|+..|.+.++.
T Consensus 119 gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l--~~~-------------~~~~~~~~~~~~~ 183 (1140)
T PRK06814 119 GIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLA--TIS-------------GNFVILVALLMGI 183 (1140)
T ss_pred HHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHH--Hhc-------------cccHHHHHHHHHH
Confidence 3344445556999999999999999999999999999999999999862 111 2578788555555
Q ss_pred HHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 012601 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (460)
Q Consensus 128 ~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (460)
.+++ ++..+.+||++......+. . .
T Consensus 184 ~~~~-~~~~~~~~~~~~~~~~~~~--------------------------------------------------~----~ 208 (1140)
T PRK06814 184 AVLG-WLASLFIPKTGNAAPDLKI--------------------------------------------------D----R 208 (1140)
T ss_pred HHHH-HHHHhhCCCCCCCCCCCee--------------------------------------------------c----c
Confidence 4433 3445667765421111000 0 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 208 ~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
.......+.++..++ .+.++.+.+..++.|+....+..+.+.|+.+ .++.++. ..| +.+.
T Consensus 209 ----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~~-------------~~g-~~~~ 268 (1140)
T PRK06814 209 ----NIIRSTITLLKYAKA-DKRIWLAILGISWFWLVGAVVLSQLPLLAKE-TLGGDEN-------------VAT-LFLA 268 (1140)
T ss_pred ----chHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HcCCchH-------------HHH-HHHH
Confidence 000111122222222 2456666777777777777777777877764 4554421 122 3455
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccC----C-CCcchhHHHHHHHHHH
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHG----I-GANQAIKVASLVVFTL 362 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 362 (460)
.+++..++.+++.+++.|+.+++++...+.++.+++.+.+.+..... . .+...... . .. +.+.+++...+
T Consensus 269 ~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 343 (1140)
T PRK06814 269 VFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSV-P-AEPAQLKSILVFLSKR---HGWRILIDLFG 343 (1140)
T ss_pred HHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccc-c-cccccccchhhhhccc---ccHHHHHHHHH
Confidence 67777888899999999888777766666666655554333320000 0 00000000 0 00 13445556667
Q ss_pred hhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 363 ~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
+|++.+..+..-.+++.+..|+ +.+|+.+|+.|+...+++.+.+++.|.+.+...+. ...+.+.+++.++.++..
T Consensus 344 ~g~~~~~~~~~~~~~~~~~~p~--~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 418 (1140)
T PRK06814 344 LAAAGGLYIVPLFAALQAWANP--AHRARVIAANNVLNAAFMVAGTIILALLQALGFSI-PWIILFIALANLIVAILI 418 (1140)
T ss_pred HHHHHHHhHHHHHHHHHhhCCc--ccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHHHHH
Confidence 8888888777778889999887 46799999999999999999998888776433222 234444444444443333
No 63
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.47 E-value=2.8e-12 Score=131.40 Aligned_cols=266 Identities=12% Similarity=0.111 Sum_probs=162.9
Q ss_pred hHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhee
Q 012601 57 PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTI 136 (460)
Q Consensus 57 p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl 136 (460)
+..+.++|..|+++|+++.++.+....+|.++++.++... .+ ..+||.+|.+.+++.++..++..
T Consensus 98 ~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l--~~-------------~~gWr~~f~~~~~l~~~~~~~~~ 162 (368)
T TIGR00903 98 NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI--YT-------------AGGLQLLIIPIAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------------ccchHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999888652 11 13699999996666555555566
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhh
Q 012601 137 YFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAV 216 (460)
Q Consensus 137 ~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (460)
+.+||+|.++.++.+ .+ .....
T Consensus 163 ~~lp~~p~~~~~~~~--------------------------------------------------~~--------~~~~~ 184 (368)
T TIGR00903 163 AALPALPFQAAEGFG--------------------------------------------------FK--------DAVKE 184 (368)
T ss_pred HHcCCCCCCCCCCcc--------------------------------------------------hH--------HHHHH
Confidence 788998743211000 00 00012
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012601 217 LVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVS 296 (460)
Q Consensus 217 ~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~ 296 (460)
++++++ .+.++.+++..++...+++.+..+.++|+.+. +.+. +. +....+ ..+...+.
T Consensus 185 ~~~ll~-----~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s~----------~~----~~~~~l-~~~~g~~g 242 (368)
T TIGR00903 185 FGALAG-----RKDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLED----------IA----GDAVAL-AILAGLIG 242 (368)
T ss_pred HHHHHc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCh----------HH----HHHHHH-HHHHHHHH
Confidence 334443 25667888889998889999988899988542 2111 11 111111 11222222
Q ss_pred HHhHHHHhhhc---CchhHHHH-HHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcC
Q 012601 297 SFLIEPMCRWI---GSRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (460)
Q Consensus 297 s~i~~~l~~ri---G~r~l~~~-g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (460)
.+++.||. ++|+.+.. ..+..++++....+.. + ....+++..+.|+.......
T Consensus 243 ---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~----~----------------~~~~~~~~~l~~~~~~~~~~ 299 (368)
T TIGR00903 243 ---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL----N----------------RLALFAFIGIAGLLMLPAYA 299 (368)
T ss_pred ---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc----c----------------cHHHHHHHHHHHHhhhhhHH
Confidence 24455554 44554443 3333333332222111 1 12223344445554444444
Q ss_pred ccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 373 vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
+-+++.+|..|++ .+|+.+|+.|....++.++.+...+.++. | ....|.+.++..+++++.+. +.|++
T Consensus 300 ~~~~~~~~~~p~~--~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~--~~~~f~~~~~~~~i~~~~~~-~~~~~ 367 (368)
T TIGR00903 300 IIMDWIGKFCDKE--LHGKAAGAIGFTSRAISVALALAAMLFIS--S--AEAYFTFLAILITIAFAIAL-LLPND 367 (368)
T ss_pred HHHHHHHHhcchh--hcCcccchhhHHHHHHHHHHHHHHHHHhc--C--HHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence 4456889999974 55888899999999999999888777663 3 22468888888888888763 44664
No 64
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.47 E-value=1.7e-12 Score=138.54 Aligned_cols=284 Identities=18% Similarity=0.142 Sum_probs=184.4
Q ss_pred hhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhe
Q 012601 56 GPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (460)
Q Consensus 56 ~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~it 135 (460)
....|+++|++|+||..+++++++...++..++|+.+|++. .. . .+....|.+.++..++... .
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L-va-~-------------~G~~~~f~inalsfl~~i~-~ 185 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL-VA-F-------------FGAAAAFLINALSFLISIL-A 185 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH-HH-H-------------HHHHHHHHHHHHHHHHHHH-H
Confidence 34789999999999999999999999999999999999862 11 1 1345678888777665443 3
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchh
Q 012601 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (460)
Q Consensus 136 l~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (460)
+...|.++. + ++.+ . | ....
T Consensus 186 l~~~~~~~~-~-~~~~--------------------------------------------------~----e----~~~~ 205 (524)
T PF05977_consen 186 LLRWKPPPP-P-SSLP--------------------------------------------------R----E----RFFS 205 (524)
T ss_pred HHHcccccc-c-cccc--------------------------------------------------h----h----hhhh
Confidence 444443221 1 1000 0 0 0112
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012601 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (460)
Q Consensus 216 ~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l 295 (460)
.+++-++-.++- +.++.+.+..++..+...++....+.+..+ .+++++. .| |. .+..+++-+++
T Consensus 206 ~l~~G~ryv~~~-~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~-~l~~~a~-------~y--Gl-----l~a~~gvGai~ 269 (524)
T PF05977_consen 206 ALREGLRYVRSS-PPLRSVLLRSFLFNLFASAVWALLPLFARD-VLGGGAS-------GY--GL-----LLAAFGVGAIL 269 (524)
T ss_pred hHHHHHHHHhcc-hHHHHHHHHHHHHHHhhhHHHHhhhHHHHH-HhCCcHH-------HH--HH-----HHHHHHHHHHH
Confidence 234434433333 445544333322222222223334444433 4555431 11 22 33456677888
Q ss_pred HHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccc
Q 012601 296 SSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPF 375 (460)
Q Consensus 296 ~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~ 375 (460)
.+++.+++.+|++++++...+.++++++++.+++.. + .+...+.+.+.|++|...+..-.
T Consensus 270 Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~----~----------------~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 270 GALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP----S----------------FWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred HHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch----H----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999899988888877666654 2 55666777789999998776655
Q ss_pred hhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhh-hccCCCCCCCccC
Q 012601 376 AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT-LKLPHLSSNSFRS 454 (460)
Q Consensus 376 aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~-~~vpe~~~~~~~~ 454 (460)
+++-+..|+ +.+|+.++++++....++.+.+++.|.+.+..|.. .++.++|+..+++.+... .-+|+.+....+.
T Consensus 330 t~~Q~~~P~--~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~--~al~~a~~~lll~~~~~~~~~l~~~~~~d~~~ 405 (524)
T PF05977_consen 330 TLVQLSVPD--WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR--TALLIAGAALLLSALIALRFPLRQGEELDLDP 405 (524)
T ss_pred HHHHHhCCH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 666677776 45688999999999999999999999998888743 367777776666665544 3467766544444
Q ss_pred C
Q 012601 455 S 455 (460)
Q Consensus 455 ~ 455 (460)
+
T Consensus 406 ~ 406 (524)
T PF05977_consen 406 S 406 (524)
T ss_pred c
Confidence 3
No 65
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.46 E-value=2.4e-12 Score=131.98 Aligned_cols=271 Identities=13% Similarity=0.011 Sum_probs=182.1
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
.....+.......++..|. +++|+++.+......++|.++|..+++. +.+. .+||..|.+.++
T Consensus 104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~--l~~~-------------~g~~~~f~~~~~ 166 (382)
T TIGR00902 104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGG--LIGM-------------FDEQNILAILTA 166 (382)
T ss_pred HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHH--HHHH-------------cChhHHHHHHHH
Confidence 3444445555677776553 5788999999999999999999987765 2221 258888887765
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
...+.++ .+..+|++.++ ++++ + .
T Consensus 167 ~~~~~~~--~~~~~~~~~~~-~~~~--~-----------------------------------------------~---- 190 (382)
T TIGR00902 167 GLAFMLI--GFLIKPTIPPK-DAIP--E-----------------------------------------------D---- 190 (382)
T ss_pred HHHHHHH--HHHcCCCCCCC-cccc--c-----------------------------------------------c----
Confidence 5433332 22334432111 1000 0 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+ ......+++++++ |.++.+++..++.+.++..+..|.+.|+.+ ++.+++ ..| +.+
T Consensus 191 ~---~~~~~~~~~~l~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~g~s~~-------------~~g-~l~ 246 (382)
T TIGR00902 191 E---SQGDSAFIALLKN-----PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--AGISAS-------------ATG-LLW 246 (382)
T ss_pred c---cccchhHHHHHcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHh-------------HHH-HHH
Confidence 0 0011123333332 456777777888888888888888888864 333321 222 234
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
.+..+...+...+.+++.||+|+|++..++.+..++......+.. + .+..+....+.|+.
T Consensus 247 ~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 247 GIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE----A----------------FPLIFLLQILHCGT 306 (382)
T ss_pred HHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh----h----------------HHHHHHHHHHHHHH
Confidence 456667777788899999999999999999999888877665543 2 56667778889999
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhhH-HHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n-~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
++........++.+. |++ .+++..|++| ....++..+.+.+.|.+.+..|. ..|...+++++++.+.+
T Consensus 307 ~~~~~~~~~~~i~~~-~~~--~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~---~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGS--EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA---GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHhC-CHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHH
Confidence 998888888888876 653 4578889987 46779999999999999888863 36888888888776543
No 66
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.46 E-value=2.5e-12 Score=131.85 Aligned_cols=274 Identities=13% Similarity=0.046 Sum_probs=172.7
Q ss_pred hhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHH
Q 012601 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (460)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~ 127 (460)
.++.+..+....+++.|. +++|+++++..+.+..+|..+|..+++. +.+. .+||.+|.+.++.
T Consensus 105 g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~--l~~~-------------~g~~~~f~~~~~~ 167 (382)
T PRK11128 105 NLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGK--LVSW-------------FGEQAILWILTAG 167 (382)
T ss_pred HHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHH--HHHH-------------cChhHHHHHHHHH
Confidence 334455555677888886 5678899999999999999999999875 2221 2588888877766
Q ss_pred HHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 012601 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (460)
Q Consensus 128 ~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (460)
.++..++ .+..||++.. ++++ + .+ +
T Consensus 168 ~~~~~~~-~~~~~~~~~~--~~~~-~------------------------------------------------~~---~ 192 (382)
T PRK11128 168 VASMLLG-QLLRPTIMPQ--GESR-Q------------------------------------------------QE---S 192 (382)
T ss_pred HHHHHHH-HHccCCCCCc--cccc-c------------------------------------------------cc---c
Confidence 5544433 3344543211 1000 0 00 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 208 ~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
....++++++++ |.++.+++..++.+.+...+..|.+.|..| .+.+++ ..|. .+.
T Consensus 193 ----~~~~~~~~i~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~g~s~~-------------~~g~-~~~ 247 (382)
T PRK11128 193 ----AGWPAWKALLKE-----PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA--AGYSAS-------------TIGY-LWS 247 (382)
T ss_pred ----cccchHHHHHcC-----hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH--CCCCHh-------------HHHH-HHH
Confidence 011234444443 455666666666666666666677777643 232211 1222 223
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
+..+..++..++.+++.||+|+|+...++.+..+++++...... + .+..++...+.|+++
T Consensus 248 ~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~ 307 (382)
T PRK11128 248 LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT----A----------------LPWLIVIQILHCGTF 307 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh----h----------------HHHHHHHHHHHHHHH
Confidence 45556677788899999999999999998888887766554332 2 455566777788888
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhH-HHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n-~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
+...+.-...+.+. ++ .+.|+..|+.+ ....+++.+.+.+.|.+.+..|. ..+...+++++++.+...+.+
T Consensus 308 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~ 379 (382)
T PRK11128 308 TVCHLAAMRYIAAR-PG--SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA---GVFWVMALVALPALFIRPKVV 379 (382)
T ss_pred HHHHHHHHHHHHHC-CH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhc
Confidence 87655433344443 33 34578888887 55677888999999999888873 267777887877766554443
No 67
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.46 E-value=1.5e-11 Score=126.91 Aligned_cols=279 Identities=11% Similarity=0.034 Sum_probs=162.6
Q ss_pred chhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhh
Q 012601 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (460)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~i 134 (460)
.....+++.|..|+++|.++.++......+|..+|..++.. +.+. .+||+.|.+.++..+++...
T Consensus 119 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--l~~~-------------~~w~~~~~~~~~~~~~~~~~ 183 (406)
T PRK15402 119 GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAA--LIHV-------------LPWRGMFVLFAALAALSFFG 183 (406)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHc-------------cCccHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999888888888888877654 1111 25888888877776665554
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCch
Q 012601 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (460)
Q Consensus 135 tl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (460)
..+..||++....++.+ .+ +..
T Consensus 184 ~~~~~~~~~~~~~~~~~--------------------------------------------------~~--------~~~ 205 (406)
T PRK15402 184 LWRAMPETAGRVGEKLS--------------------------------------------------LK--------ELG 205 (406)
T ss_pred HHHhCCCCCcccccccc--------------------------------------------------HH--------HHH
Confidence 44456665421100000 00 011
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 012601 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (460)
Q Consensus 215 ~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~ 294 (460)
..++.+++ -| .++.+++..++...+...+..+.+.|..+ .++.++ . ..|. ......+...
T Consensus 206 ~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~---------~----~~g~-~~~~~~~~~~ 265 (406)
T PRK15402 206 RDYKLVLK----NR-RFVAGALALGLVSLPLLAWIALSPVILIS-GEQLSS---------Y----EYGL-LQVPVFGALI 265 (406)
T ss_pred HHHHHHHc----Cc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCCH---------H----HHHH-HHHHHHHHHH
Confidence 12222222 22 34555555544444444444444444432 233221 1 1221 2222334566
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
+.+++.+++.||+++|+...++.+.++++++...+......+ +.....+.+.+.|++.+......
T Consensus 266 ~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~~~~~~g~g~~~~~~~~ 330 (406)
T PRK15402 266 AGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSH---------------AYLWLTAGLSLYAFGIGLANAGL 330 (406)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccc---------------cHHHHHHHHHHHHHHHHHHhhhH
Confidence 678899999999999999888888777766655443211000 13334556667888887665543
Q ss_pred chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 375 ~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
.+.. ...++ +.+|+..|+.+....+++.+.+.+.+.+.+..+.. .....+.+++++..++...+..+
T Consensus 331 ~~~~-~~~~~--~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK15402 331 YRLT-LFSSD--VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG--LFNLFNLANGLLWLLLVRIFLKD 397 (406)
T ss_pred HHHH-hhhcc--ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333 23333 45699999999999999999999888887766532 23333444444444444444443
No 68
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.45 E-value=9.6e-13 Score=138.37 Aligned_cols=294 Identities=14% Similarity=0.066 Sum_probs=172.6
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++......+..+++.|..|+++|+++.++.+....+|..+|..+++. +.+ ..+||++|.+.
T Consensus 98 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~--l~~-------------~~~w~~~f~~~ 162 (485)
T TIGR00711 98 VIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW--IIE-------------NYHWRWIFLIN 162 (485)
T ss_pred HHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH--hcc-------------CcCceehhhhh
Confidence 344555566677889999999999999999999999999999999988764 211 12688999888
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCcccc----c---c--ccccCCCCCCCCCCCCCccCCcccchhh
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRN----A---I--SKSKHDMPAAPNANGNKVESGHESDANL 195 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~----~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (460)
+.+.+++.++..+..||++....+ + .+..... . + ...+.++. .+ .+. ++....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~--~-------~d~~g~~l~~~~~~~~~~~~~~~~~~-----~~--~~~--~~~~~~ 224 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKPAASE--N-------FDFLGLLLLSVGLGSLLYGLSEGPER-----GW--FDS--NEILIL 224 (485)
T ss_pred hHHHHHHHHHHHHHcCCccccccC--C-------CcHHHHHHHHHHHHHHHHHHhhCCCC-----CC--CCc--hHHHHH
Confidence 777666666666667775421111 0 0000000 0 0 00000000 00 000 000000
Q ss_pred h---------hhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCC
Q 012601 196 K---------HISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPK 266 (460)
Q Consensus 196 ~---------~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~ 266 (460)
. ...+..+. + .+... .++++ . +.++..++..++..++++...+|.+.|+.+ +++.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~--~----~~~~~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~s~~ 291 (485)
T TIGR00711 225 SITGLVAIIAFVVWELTD--D----NPLVD-LRLFK----Y-RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQ-VLGYTAL 291 (485)
T ss_pred HHHHHHHHHHHHHHHHcC--C----CCccC-HHHHc----C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH
Confidence 0 00000000 0 00001 11222 1 234455677777777777777788877764 4443321
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCC
Q 012601 267 GNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGI 346 (460)
Q Consensus 267 ~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 346 (460)
..| +.+...++...+.+.+.+++.||+|||++..++..+.++++..+.+.... +
T Consensus 292 -------------~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~--~---------- 345 (485)
T TIGR00711 292 -------------QAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP--D---------- 345 (485)
T ss_pred -------------HHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC--C----------
Confidence 122 24455677788889999999999999999999888887766654421100 1
Q ss_pred CCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee
Q 012601 347 GANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (460)
Q Consensus 347 ~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~ 416 (460)
. ..........+.|++.+.....-...+.+..|+ +..|...|+.|....+++.+.+.+.|.+++
T Consensus 346 --~--~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 346 --T--PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP--HKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred --C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 123344456667887776554333445566665 456889999999999999999888887764
No 69
>PRK10504 putative transporter; Provisional
Probab=99.45 E-value=3.3e-12 Score=134.32 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=168.7
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........+++.|..|+++|++++++.+...++|..+|..+++. ..+. .+||++|.+...
T Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~--l~~~-------------~gw~~~f~~~~~ 172 (471)
T PRK10504 108 QGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL--LVEY-------------ASWHWIFLINIP 172 (471)
T ss_pred HHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhh-------------ccHHHHHHHHHH
Confidence 3444444555678899999999999999999999999999999888764 1111 269999999877
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccc-------ccc-ccCCCCCCCCCCCCCccCCcccchhh---
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNA-------ISK-SKHDMPAAPNANGNKVESGHESDANL--- 195 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--- 195 (460)
...++.+.+....||.+... .+ .+...... +.. ...++. ..+ .. ......
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~---~r-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~--~~~~~~~~~ 233 (471)
T PRK10504 173 VGIIGAIATLMLMPNYTMQT---RR-------FDLSGFLLLAVGMATLTLALDGSKG----LGL---SP--LAIAGLVAV 233 (471)
T ss_pred HHHHHHHHHHHhCCCccccC---CC-------CChHHHHHHHHHHHHHHHHHhcCCc----CCc---ch--HHHHHHHHH
Confidence 76666666655555543211 11 00000000 000 000000 000 00 000000
Q ss_pred --hhh----cccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCC
Q 012601 196 --KHI----SKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGND 269 (460)
Q Consensus 196 --~~~----~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~ 269 (460)
... .++++ + .++..++ +++++ +.++..++..++.+.+......+.+.|+.+ .++.++
T Consensus 234 ~~~~~~~~~~~~~~---~---~~~~~~~-~l~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---- 296 (471)
T PRK10504 234 GVVALLLYLLHARN---N---NRALFSL-KLFRT-----RTFSLGLAGSFAGRIGSGMLPFMTPVFLQI-GLGFSP---- 296 (471)
T ss_pred HHHHHHHHHHHHhc---C---CCCccCH-HHhcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCH----
Confidence 000 00000 0 0011111 12222 455666777777777766665566666543 233221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCc
Q 012601 270 HEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGAN 349 (460)
Q Consensus 270 ~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (460)
. ..| +.+..+.+...+...+.+++.||+|+|+++..+..+.+++.+.+.+... + +
T Consensus 297 -----~----~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~------------~ 351 (471)
T PRK10504 297 -----F----HAG-LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL---L------------G 351 (471)
T ss_pred -----H----HHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc---c------------c
Confidence 1 122 2344556666667788999999999999999888877776554443321 0 0
Q ss_pred chhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc
Q 012601 350 QAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (460)
Q Consensus 350 ~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g 419 (460)
+.+...+.+.+.|++.+.....-.+++.+..|+ +..|...|+.|+...+++.+.+.+.|.+++..|
T Consensus 352 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 352 --WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD--NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122233344556666666555555677777776 456888899999999999999999888876654
No 70
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.45 E-value=4e-12 Score=133.70 Aligned_cols=304 Identities=12% Similarity=0.068 Sum_probs=172.5
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++.........++++|..|+++|++++++......+|.++++.+++.. .+. ..+||..|++.++
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l--~~~------------~~gw~~~f~i~~~ 206 (465)
T TIGR00894 141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL--CES------------WGGWPMIFYVFGI 206 (465)
T ss_pred HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhc------------cCCCCeehhhhhH
Confidence 33444455556789999999999999999999999999999998887541 110 0268899998887
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.++..++.....||+|....+.++ .+++..++... .+ +
T Consensus 207 ~~~~~~~~~~~~~~~~p~~~~~~~~----------~~~~~i~~~~~-----------------------------~~-~- 245 (465)
T TIGR00894 207 VGCAWSLLWFVFPADDPSIHPCISK----------FEKKYINSSLQ-----------------------------GQ-K- 245 (465)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCCH----------HHHHHHHhhcc-----------------------------cc-c-
Confidence 7666655555566776632211100 00000000000 00 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+ +...+..++++++. +.++.+++..+....+++.+..|.+.|+.+ .++.++. ..| +..
T Consensus 246 ~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s~~-------------~~g-~~~ 303 (465)
T TIGR00894 246 G--STRQSLPIKAIPKS-----LPVWAIWFAIFGHFWLYTILPTYLPTFISW-VLRVSGK-------------ENG-LLS 303 (465)
T ss_pred C--CCCCCCCHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcChH-------------HhH-HHH
Confidence 0 00111234544443 467778888888888888888899998875 4443321 122 223
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHH--------HHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHH
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVW--------AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~--------~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (460)
.+..+...+.+++.+++.||+++|+.. ..+......+........ .. + .....++
T Consensus 304 ~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~---------------~~~~~~~ 366 (465)
T TIGR00894 304 SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-LS-A---------------AFYLTII 366 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-cC-C---------------chHHHHH
Confidence 345566777888899999987644211 111111111111111111 00 0 0222233
Q ss_pred HHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc-CccchhHhHHHHHHHHHH
Q 012601 359 VFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-GGNIPAFVLASLSALAGG 437 (460)
Q Consensus 359 ~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g-~~~~~~f~~~~v~~lia~ 437 (460)
++.+.+...+.....-.+...++.| +..|..+|+.|+...++.++++.+.|.+.+..+ +....+|.+.++..+++.
T Consensus 367 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~ 443 (465)
T TIGR00894 367 ILTLANAVSSGPLAGVLINSLDLAP---RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCV 443 (465)
T ss_pred HHHHHHHHhhhhhhhhhhchhhcCh---hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHH
Confidence 3333333333222222223345544 367999999999999999999999998876432 112346888888888887
Q ss_pred HHhhhccCCCC
Q 012601 438 VVATLKLPHLS 448 (460)
Q Consensus 438 ~~~~~~vpe~~ 448 (460)
++.. .+++.+
T Consensus 444 i~~~-~~~~~~ 453 (465)
T TIGR00894 444 IFYL-IFGSAE 453 (465)
T ss_pred HHee-eeecce
Confidence 7654 344333
No 71
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.44 E-value=2.2e-12 Score=137.16 Aligned_cols=283 Identities=14% Similarity=0.046 Sum_probs=168.7
Q ss_pred ccchhHHHHHhcC-CCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHH
Q 012601 53 TVQGPARALLADL-SGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLC 131 (460)
Q Consensus 53 ~~~~p~rA~i~D~-~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~ 131 (460)
.......+.+.|. .|+++|++++++.....++|..+|..+++. +.+. ..||+.|.+...+.+++
T Consensus 110 ~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~--l~~~-------------~gwr~~f~i~~~~~~~~ 174 (495)
T PRK14995 110 MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI--LLEH-------------FYWGSVFLINVPIVLVV 174 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc-------------CChHHHHHHHHHHHHHH
Confidence 3333455666565 478999999999999999999999999875 2221 26999999988777777
Q ss_pred hhheeEEeeccCCCCCCCCCCCCCCCCCCCcccc-----------ccccccCCCCCCCCCCCCCccCCcccchhhh----
Q 012601 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRN-----------AISKSKHDMPAAPNANGNKVESGHESDANLK---- 196 (460)
Q Consensus 132 ~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 196 (460)
.++..+.+||+|..+.+ + .+-.... .++....+ + ... .......
T Consensus 175 ~~l~~~~l~~~~~~~~~--~-------~d~~g~~~~~~~~~~l~~~~~~~~~~--------~--~~~--~~~~~~~~~~~ 233 (495)
T PRK14995 175 MGLTARYVPRQAGRRDQ--P-------LNLGHALMLIVAILLLVYSAKTALKG--------F--LSL--WVTSLTLLTGA 233 (495)
T ss_pred HHHHHHhCCCCCCCCCC--C-------CChHhHHHHHHHHHHHHHHHHhcccc--------C--Cch--HHHHHHHHHHH
Confidence 77777778886521110 0 0000000 00000000 0 000 0000000
Q ss_pred --h-hcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhh
Q 012601 197 --H-ISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVK 273 (460)
Q Consensus 197 --~-~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~ 273 (460)
- .....|.+ . ...... .++++ .+.++..++..++..++++++.+|.+.|+.+ +++.+|.
T Consensus 234 ~~l~~f~~~e~~-~---~~p~~~-~~lf~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~-v~g~s~~------- 295 (495)
T PRK14995 234 LLLGLFIRTQLA-A---SRPMID-MRLFT-----HRIILSGVVMAMTAMITLVGFELLMAQELQF-VHGLSPL------- 295 (495)
T ss_pred HHHHHHHHHHhc-C---CCCCcC-HHHhC-----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH-------
Confidence 0 00000000 0 000000 11121 1233445666777777788888888888764 4444431
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhH
Q 012601 274 FYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK 353 (460)
Q Consensus 274 ~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (460)
..| ..+..+++...+.+.+.+++.||+|+|++...|.++.++++.++.+.... + ..
T Consensus 296 ------~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~--~---------------~~ 351 (495)
T PRK14995 296 ------EAG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFS--T---------------QQ 351 (495)
T ss_pred ------HHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCC--C---------------ch
Confidence 222 24556777788889999999999999999888888887776554443210 1 12
Q ss_pred HHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce
Q 012601 354 VASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (460)
Q Consensus 354 ~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~ 415 (460)
+.......+.|++.+.........+.+..|+ +..|...|+.|.+..+++.+.+.+.|.++
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPP--EKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH--HhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778999887776666667777776 45688889999999999988887777664
No 72
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.43 E-value=4.3e-12 Score=133.53 Aligned_cols=291 Identities=12% Similarity=0.075 Sum_probs=171.7
Q ss_pred cccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHH
Q 012601 50 ANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT 129 (460)
Q Consensus 50 a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~ 129 (460)
+......|..+++.|..| ++|+++.++.+....+|..++..++.. +.+ ..+||+.|.+.+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~--l~~-------------~~gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 121 GLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQY--LFE-------------SFGWRGSFLILGGLLL 184 (455)
T ss_pred cchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHH--HHH-------------HhChHHHHHHHHHHHH
Confidence 333344577788889885 789999999999999988888766643 111 1269999999888776
Q ss_pred HHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCC
Q 012601 130 LCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSF 209 (460)
Q Consensus 130 i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (460)
++.+..++..|+++..+..+.+.++.. .++. +..+. + .+
T Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~--------~~~~~--------~-----~~------ 223 (455)
T TIGR00892 185 HCCVCGALMRPVGPSQRVSKSKSKEGL--------------PPDG--------STKKL--------S-----KK------ 223 (455)
T ss_pred HHHHHHHHhCCCCcccccccccccccC--------------CCCC--------ccccc--------c-----cc------
Confidence 555443444443321110000000000 0000 00000 0 00
Q ss_pred CCCchhhHHHH--HHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 210 NDGPGAVLVNL--LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 210 ~~~~~~~~~~l--~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
......++. ++.+ + .+.++..++..++..++++....|.+.|..+ ++.++ .+.+ +.+.
T Consensus 224 --~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s~---------~~~g-----~~~~ 283 (455)
T TIGR00892 224 --STAEKINRFLDFSLF-T-HRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD--KGVDE---------YEAA-----FLLS 283 (455)
T ss_pred --chhhhhhhhcchHHh-c-CchHHHHHHHHHHHHHHccchHHHHHHHHHH--cCCCH---------HHHH-----HHHH
Confidence 000001110 1111 1 2345666666777777777767777777653 22221 1111 2344
Q ss_pred HHHHHHHHHHHhHHHHhhh--cCchhHHHHH--HHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 288 LNSVVLGVSSFLIEPMCRW--IGSRLVWAIS--NFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~r--iG~r~l~~~g--~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+.++...+...+.+++.|| +++|+...++ .+..+++++...+.. + .+..++...+.
T Consensus 284 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~----~----------------~~~~~i~~~~~ 343 (455)
T TIGR00892 284 IIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG----D----------------YTGLVIYCIFF 343 (455)
T ss_pred HHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc----h----------------HHHHHHHHHHH
Confidence 5666777778888999987 3344433333 333333332222111 1 34455667788
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
|++++......++++.|..|+ +..|+.+|+.++...+++++.+.++|.+.+..|+. ...|.+.+++.++++++.
T Consensus 344 G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~-~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 344 GLSFGSVGALLFEVLMDLVGA--QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY-KYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHhchHHHHHHHHHHHHhhH--HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc-chHHHHhhHHHHHHHHHH
Confidence 999988888888999999886 45688999999999999999999999999887643 357888888777766643
No 73
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.42 E-value=4.8e-12 Score=130.20 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
.+.+++..+.....+++.||+|+|+++.++.+++++.+.+..... + .+...+...+.|++
T Consensus 261 ~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~----~----------------~~~~~~~~~l~g~~ 320 (396)
T TIGR00882 261 TMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT----T----------------ALEVVILKMLHAFE 320 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC----C----------------hHHHHHHHHHHHHH
Confidence 345566677788889999999999999998888877665433322 1 34445556667777
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhh-hHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhh
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi-~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~ 442 (460)
...........+.+..|+ |..++..+. .|....+++++.+.+.|.+.+..|. ..+|.+.+++.++.++...+
T Consensus 321 ~~~~~~~~~~~~~~~~~~--~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~--~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 321 VPFLLVGCFKYITSQFDV--RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF--QGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHHhCCc--ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence 665544444444444443 555666666 7889999999999999999998773 35788888888877765543
No 74
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.42 E-value=1.5e-12 Score=135.10 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
...++.+...+..++.+++.||+|+|+.+.++.++.++++++..+.. + .+...+...+.|
T Consensus 267 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~----~----------------~~~~~~~~~l~g 326 (420)
T PRK09528 267 LNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT----G----------------PLEVSILKLLHA 326 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc----c----------------HHHHHHHHHHHH
Confidence 34445666777888999999999999999988888877666555432 2 344455566677
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhh-hHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi-~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
++.+.......+.+.+..|+ +..++..++ .|....++.++.+.+.|.+.+..|. ...|...+++.+++.++..+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~--~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 327 FEVPFLLVGVFKYITLNFDV--RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF--QGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCc--cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc--hHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666777888876 345665555 7888889999999999999988773 347887777777777666666
Q ss_pred cCCCCCC
Q 012601 444 LPHLSSN 450 (460)
Q Consensus 444 vpe~~~~ 450 (460)
+++.+-+
T Consensus 403 ~~~~~~~ 409 (420)
T PRK09528 403 LSGDREL 409 (420)
T ss_pred hcCCchh
Confidence 6554443
No 75
>PRK03699 putative transporter; Provisional
Probab=99.41 E-value=4.3e-12 Score=130.60 Aligned_cols=269 Identities=12% Similarity=0.056 Sum_probs=162.8
Q ss_pred hcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHH
Q 012601 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFL 128 (460)
Q Consensus 49 ~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~ 128 (460)
++.........+++.|..|+++|+++.+......++|+.++..+.... ..+ ..+||+.|.+.+++.
T Consensus 107 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l-~~~-------------~~gw~~~f~~~~~~~ 172 (394)
T PRK03699 107 VVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL-LAR-------------SIEWYWVYACIGLVY 172 (394)
T ss_pred HhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-------------cccHHHHHHHHHHHH
Confidence 333344456788999999999999999988888888887776655321 111 136999998877766
Q ss_pred HHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCC
Q 012601 129 TLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGS 208 (460)
Q Consensus 129 ~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (460)
++..++.+ .++.|..+.++++ + .+ +
T Consensus 173 ~~~~~~~~--~~~~p~~~~~~~~--~-----------------------------------------------~~---~- 197 (394)
T PRK03699 173 VAIFILTL--FSEFPALGKHAPK--A-----------------------------------------------DK---P- 197 (394)
T ss_pred HHHHHHHH--hcCCccccccCcc--c-----------------------------------------------cC---c-
Confidence 55443322 2232311110000 0 00 0
Q ss_pred CCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHH
Q 012601 209 FNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL 288 (460)
Q Consensus 209 ~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~ 288 (460)
.. ++. ..+.++.+++..++...+.+.+..|.+.|+.| .++.+++ ..| +....
T Consensus 198 ---~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~-------------~~~-~~~~~ 249 (394)
T PRK03699 198 ---VA----KEK------WGIGVLFLAIAALLYILAQLTFISWVPEYAQK-KFGMSLE-------------DAG-NLVSN 249 (394)
T ss_pred ---cc----ccc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChH-------------Hhh-HHHHH
Confidence 00 000 12344455555666556666777788888765 3454431 111 22334
Q ss_pred HHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhh
Q 012601 289 NSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLA 368 (460)
Q Consensus 289 ~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a 368 (460)
+.+...+..++.+++.||+++|++...+..+.++.+..+.... + .....+.+...|+..+
T Consensus 250 ~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~G~~~~ 309 (394)
T PRK03699 250 FWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD----D----------------PSHLLYAILGLGFFSS 309 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC----C----------------chHHHHHHHHHHHHHH
Confidence 5556778889999999999999998876665554433322211 1 2233344556777776
Q ss_pred hhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHH
Q 012601 369 ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (460)
Q Consensus 369 ~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~ 439 (460)
...+...+...+..|++ .+...|..+.+..+++++.|.+.|.+.+..|.. ..|.+.+++.+++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~--~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 310 AIYTTIITLGSQQTKVA---SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ--AALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHHccCC---CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch--hhhhhhHHHHHHHHHH
Confidence 66666556666666542 356678888899999999999999998877743 4676666666665543
No 76
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.40 E-value=7e-12 Score=130.53 Aligned_cols=148 Identities=7% Similarity=-0.096 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+.+..+..++..++.+++.||+|+|+++.++.++.++++........ + ....+..++...+.|
T Consensus 256 ~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~---~-------------~~~~~~l~l~~~l~g 319 (418)
T TIGR00889 256 WMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP---E-------------YFGYALLFLSMIVYG 319 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc---c-------------hhhHHHHHHHHHHHH
Confidence 455666677778899999999999999999998888776654443210 0 001334555667788
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhH-HHHHHHHHHHhhccccceecccC----ccchhHhHHHHHHHHHHHH
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGG----GNIPAFVLASLSALAGGVV 439 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n-~~~~l~qil~~~~~g~l~~~~g~----~~~~~f~~~~v~~lia~~~ 439 (460)
++++........+++|..|+ +.+|+.+|+.+ ....++.++.|.+.|.+.+..|+ +..++|.+.+++.+++++.
T Consensus 320 ~~~~~~~~~~~~~i~~~~p~--~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l 397 (418)
T TIGR00889 320 CAFDFFNISGSVFVEKEVPV--HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVL 397 (418)
T ss_pred HHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence 88887777767788999987 46699999998 56789999999999999887653 1235788888888888888
Q ss_pred hhhccCCCCCC
Q 012601 440 ATLKLPHLSSN 450 (460)
Q Consensus 440 ~~~~vpe~~~~ 450 (460)
..+++||+++.
T Consensus 398 ~~~~~~~~~~~ 408 (418)
T TIGR00889 398 FMIFFKYSHNA 408 (418)
T ss_pred HHHHhCCcccC
Confidence 88888988653
No 77
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.40 E-value=1.1e-11 Score=131.01 Aligned_cols=139 Identities=9% Similarity=0.045 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+..+++..++.+++.+++.||+|||+++.++.++.++..+...... + + ..+.....+.+.+
T Consensus 316 ~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~------------~--~~~~~~~~~~~~~ 377 (496)
T PRK03893 316 VLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG----G------------A--NVWVLGLLLFFQQ 377 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc----c------------c--HHHHHHHHHHHHH
Confidence 44556777888899999999999999998887666554433222211 1 0 1122222222222
Q ss_pred -hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhH-HHHHHHHHHHHhhh
Q 012601 365 -FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVL-ASLSALAGGVVATL 442 (460)
Q Consensus 365 -i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~-~~v~~lia~~~~~~ 442 (460)
.+.+ ...+-.+++.+..|+ +.+|+.+|+.+....+++.+.+.+.|.+.+..|.. ..+.+ ++++.+++.+...+
T Consensus 378 ~~~~~-~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~ 452 (496)
T PRK03893 378 MLGQG-ISGLLPKLIGGYFDT--EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG--TALASLSFSLTFVVILLIGL 452 (496)
T ss_pred HHhcc-cchhhHHHHHhhCCH--HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHHHHHh
Confidence 2222 223334578888886 35688999999999999999999999988887743 24433 33444444444444
Q ss_pred ccCC
Q 012601 443 KLPH 446 (460)
Q Consensus 443 ~vpe 446 (460)
..|+
T Consensus 453 ~~~~ 456 (496)
T PRK03893 453 DMPS 456 (496)
T ss_pred cCcH
Confidence 4554
No 78
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.36 E-value=1.9e-11 Score=125.16 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
..++.+..++..++.+++.||+|+|++...+..+.+++.+... . . .. ......+.|+
T Consensus 241 ~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~----~----------------~~-~~~~~~l~g~ 297 (381)
T PRK03633 241 MALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S----Q----------------AA-MAPALFILGA 297 (381)
T ss_pred HHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h----h----------------HH-HHHHHHHHHH
Confidence 4456667778889999999999999998888877776554332 1 0 01 1122334455
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
+.....+.-.+++.|..|+ ++.+...+..+.+..+++.+.|...|.+.+..|. .+.|.+.+.+.+++.++..+.
T Consensus 298 ~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~--~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEH--HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD--NLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHhHHHHHHHHHHccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555667777765 3446678888999999999999999999887763 357888888888777665443
No 79
>PRK11043 putative transporter; Provisional
Probab=99.35 E-value=6.2e-11 Score=121.96 Aligned_cols=246 Identities=14% Similarity=0.077 Sum_probs=144.3
Q ss_pred chhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhh
Q 012601 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (460)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~i 134 (460)
.....+++.|..|++++++..+......++|..+|..+++. ..+. .+||..|.+..++.++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--l~~~-------------~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 112 AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAW--LLNH-------------FGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc-------------CChHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999888888999998887764 1111 26898888877776655544
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCch
Q 012601 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (460)
Q Consensus 135 tl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (460)
. +..+|++..+ + ++ ..+
T Consensus 177 ~-~~~~~~~~~~-~-~~------------------------------------------------------------~~~ 193 (401)
T PRK11043 177 T-LRLKPSKKAR-K-QS------------------------------------------------------------QDA 193 (401)
T ss_pred H-HHcCCCCCcc-c-cc------------------------------------------------------------hHH
Confidence 3 3345443110 0 00 011
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 012601 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (460)
Q Consensus 215 ~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~ 294 (460)
..++++++. | .++...+.....-.+++.+..+.+.++.+ ++.+++ ..| +....+.+...
T Consensus 194 ~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~-------------~~g-~~~~~~~~~~~ 252 (401)
T PRK11043 194 LTFKQLLKS----K-TYLGNVLIFAACSAAFFAWLTGSPFILEQ--MGYSPA-------------DIG-LSYVPQTIAFL 252 (401)
T ss_pred HHHHHHHcC----h-hHHHHHHHHHHHHHHHHHHHHHhHHHHHH--cCCCHH-------------HHH-HHHHHHHHHHH
Confidence 223333332 2 22222222222222333444444544432 232211 112 23445566677
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
+.+++.+++.||+|+|+....+....+++.+..........+ .....++...+.|++.+....+.
T Consensus 253 ~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 317 (401)
T PRK11043 253 VGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHP---------------SLVPLLIPFCVMAAANGAIYPIV 317 (401)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999987766666655554433332211001 13334445566788888777775
Q ss_pred chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec
Q 012601 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 417 (460)
Q Consensus 375 ~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~ 417 (460)
.+...+..|+ .+|..+|+.|......-.+.+...|.+.+.
T Consensus 318 ~~~~~~~~~~---~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 318 VAQALRPFPQ---ATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHhhhCcc---cChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5555555553 468899999998777778888777877653
No 80
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.34 E-value=4e-11 Score=126.95 Aligned_cols=284 Identities=10% Similarity=0.028 Sum_probs=148.6
Q ss_pred hhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhe
Q 012601 56 GPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (460)
Q Consensus 56 ~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~it 135 (460)
.+...++.|..|+++|++++++......+|..++..+.... ...+...... ...+||+.|.+.+++.+++.++.
T Consensus 142 ~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i--~~~~~~~~~~----~~~gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 142 VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV--FPLIKDAGAP----SFTAWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCc----chhhhHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999877777777765444221 0000000000 01269999999887776655554
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchh
Q 012601 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (460)
Q Consensus 136 l~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (460)
.+..+|+|....++.+ + .. + .++.
T Consensus 216 ~~~~~~~p~~~~~~~~-------------------~-----------------------------~~----~----~~~~ 239 (476)
T PLN00028 216 LTLGQDLPDGNYRELK-------------------K-----------------------------SG----T----MPKD 239 (476)
T ss_pred HHHcCcCCCCchhhHH-------------------h-----------------------------cC----c----cccc
Confidence 4444443311000000 0 00 0 0001
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012601 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (460)
Q Consensus 216 ~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l 295 (460)
.....++...+.|+ .+.+++..++.+...+.+..+.+.|+.+ .++-++ . ..+ ....++++...+
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~------------~-~a~-~~~~~~~~~~~i 303 (476)
T PLN00028 240 SFSKVLRYGVTNYR-TWILALTYGYSFGVELTMDNIIAEYFYD-RFGLSL------------E-TAG-AIAASFGLMNLF 303 (476)
T ss_pred cHHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHhHHHHHHHH-hcCCCH------------H-HHH-HHHHHHHHHHHH
Confidence 11112222222233 3444555444444444444455555543 233221 0 122 234456677888
Q ss_pred HHHhHHHHhhhcCch-----hHHH--HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhh
Q 012601 296 SSFLIEPMCRWIGSR-----LVWA--ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLA 368 (460)
Q Consensus 296 ~s~i~~~l~~riG~r-----~l~~--~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a 368 (460)
..++.++++||++|| +.++ +..++.+++++...... + .....+.+.+++++.+
T Consensus 304 g~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~----~----------------~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 304 ARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN----S----------------LGAAIVVMILFSIFVQ 363 (476)
T ss_pred HHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc----h----------------HHHHHHHHHHHHHHHH
Confidence 899999999999865 2222 22222222221111111 1 2223334444555554
Q ss_pred hhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 369 ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 369 ~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
.....-++++.++.| +..|+..|+.+....++.++.+.+.+ .+..++ +...|.+.+++.++++++.++.
T Consensus 364 ~~~~~~~~~~~~~~~---~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~-y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 364 AACGATFGIVPFVSR---RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYS-TETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HhhhhhcccCcccCh---hhchhhhhhhhccccHHHHHHHHHHH--hcCCcc-HhhHHHHHHHHHHHHHHHHHhe
Confidence 444555566666654 35688999998888778777776543 112222 2457888888888887766443
No 81
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.33 E-value=6.2e-11 Score=118.61 Aligned_cols=284 Identities=14% Similarity=0.109 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccccccccccccccccc--chhhcccc
Q 012601 38 FVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTS--RACCAACG 115 (460)
Q Consensus 38 ~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~--~~~~~~~~ 115 (460)
...++++.++-.+.-..|..+-+|+.|+.|+|++.+..++.+.+.++|.++|++++... ..+....... +.-.....
T Consensus 11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~-i~~~~~~~~~~~~~~~~~~~ 89 (310)
T TIGR01272 11 VLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSL-ILSGAGDLSMQVATANAEAA 89 (310)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHH-HhcCCcchhhhhhhhhHHHH
Confidence 45677888899999999999999999999999999999999999999999999998742 1000000000 00000013
Q ss_pred chhHHHHH-HHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchh
Q 012601 116 NLKAAFLV-AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDAN 194 (460)
Q Consensus 116 ~~~~~f~i-~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (460)
+|+.+|.+ +++..++.+++.....||.+. +++++
T Consensus 90 ~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--~~~~~------------------------------------------- 124 (310)
T TIGR01272 90 KVHTPYLLLAGALAVLAIIFAFLPLPELQE--ADVAR------------------------------------------- 124 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCc--ccccc-------------------------------------------
Confidence 68999984 444454444443444454321 01000
Q ss_pred hhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHH-hhhhhhhhccccccce-eecCCCCCCChhh
Q 012601 195 LKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWL-SWFPFFLFDTDWMGRE-VYHGDPKGNDHEV 272 (460)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~-g~~~~~~y~t~~vg~~-vf~~~p~~~~~~~ 272 (460)
..+ + +....++.++. | .++ ++...+|... +..++..+.+.|+.+. .++.++
T Consensus 125 ------~~~---~-----~~~~~~~~~~~----~-~~~-l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~------- 177 (310)
T TIGR01272 125 ------VSS---G-----DTTQKTSAFQF----T-HLV-LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPE------- 177 (310)
T ss_pred ------ccc---c-----cccchhhHHhh----H-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCH-------
Confidence 000 0 00000112221 1 222 3434444444 4556666677777542 233332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchh
Q 012601 273 KFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAI 352 (460)
Q Consensus 273 ~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (460)
.........+.....+..++.+++.||+|+||+..++..+.++++++..... +
T Consensus 178 -------~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~----~---------------- 230 (310)
T TIGR01272 178 -------DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH----G---------------- 230 (310)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC----C----------------
Confidence 1122345567777888899999999999999988777666655443222211 1
Q ss_pred HHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhH
Q 012601 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVL 428 (460)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~ 428 (460)
.. ....+.++|++.+.....-+++..+..|++ .|...+++. +..++..+.|.+.|.+.|..|.. ..|.+
T Consensus 231 ~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~---~~~asai~~-~~~~Gg~i~P~l~G~lad~~g~~--~a~~v 299 (310)
T TIGR01272 231 YV-AMWFVLALGLFNSIMFPTIFSLALNALGRH---TSQGSGILC-LAIVGGAIVPLLQGSLADCLGIQ--LAFAL 299 (310)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhHHHHH-HHHhcchHHHHHHHHHHHhccch--HHHHH
Confidence 11 223455788998888888888888888753 345557764 55688899999899988877632 34553
No 82
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.32 E-value=2.2e-11 Score=123.03 Aligned_cols=258 Identities=13% Similarity=0.048 Sum_probs=141.3
Q ss_pred cccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHH-HHHHHHHHH
Q 012601 52 NTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF-LVAVVFLTL 130 (460)
Q Consensus 52 n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f-~i~~i~~~i 130 (460)
+....+..+++.|..|+++|+++.++...+..+|..+|..++... ........ +.. ...+||+.| .+.+++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l-~~~~~~~~-~~~---~~~~w~~~~~~~~~~~~~~ 179 (366)
T TIGR00886 105 GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI-IGSLIFGA-GLP---AHLAWGWAFVIVPAGILLL 179 (366)
T ss_pred chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHhcc-ccc---ccccccchhHHHHHHHHHH
Confidence 445567889999999999999999999988888888887776431 11000000 000 012688888 443433333
Q ss_pred HhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCC
Q 012601 131 CALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFN 210 (460)
Q Consensus 131 ~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (460)
..++..+..+|.|..+.++++.+. +.+. ... +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~--------------------------~~~---~--- 211 (366)
T TIGR00886 180 PALLIFFVGADTPPGKPATGKLSF----------------KGAR--------------------------WSV---G--- 211 (366)
T ss_pred HHHHHHHhcccCCcccccchhccc----------------cccc--------------------------ccc---c---
Confidence 444445666776632211110000 0000 000 0
Q ss_pred CCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 012601 211 DGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNS 290 (460)
Q Consensus 211 ~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~s 290 (460)
++.....++.++ . +..+.+++..++.+.....+..+.+.|+.+ .++.++. ..| +...++.
T Consensus 212 ~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~~-~~~~~~~ 271 (366)
T TIGR00886 212 TGALGDQLKVFR----D-RHTWILALLYSVTFGSFLGVSSIFAMFFKD-QFGLSKV-------------TAG-AYASLGG 271 (366)
T ss_pred chhHHHHHHHHh----c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHH-------------HHH-HHHHHHH
Confidence 000011222222 1 234555666666666666777777777754 3443321 122 2334456
Q ss_pred HHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhh
Q 012601 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (460)
Q Consensus 291 i~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (460)
+...+..++.+++.||+|+|+.+..+....+.+.....+... + ++ +....++...+.++..+..
T Consensus 272 ~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~--~~~~~~~~~~~~~~~~g~~ 335 (366)
T TIGR00886 272 LLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV---S-----------PL--SLAVFIVLFVALFFFSGAG 335 (366)
T ss_pred HHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC---C-----------cc--hHHHHHHHHHHHHHHhccc
Confidence 667778889999999999998888777666655544433221 0 00 1222333333344444545
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHH
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIV 401 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~ 401 (460)
....+++++++.| +..|+.+|+.+....
T Consensus 336 ~~~~~~~~~~~~~---~~~g~~~g~~~~~~~ 363 (366)
T TIGR00886 336 NGSTFALVPHIFR---RATGAVSGLVGAIGN 363 (366)
T ss_pred cchhhhcchhhch---hhcccHHHHHHHhcc
Confidence 5556677888876 356888898887643
No 83
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.31 E-value=4.3e-11 Score=121.10 Aligned_cols=246 Identities=12% Similarity=0.079 Sum_probs=150.0
Q ss_pred hhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhe
Q 012601 56 GPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (460)
Q Consensus 56 ~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~it 135 (460)
....+++.|..| ++|+++.++.+...++|..++..++.. +.+. .+..||..|.+.+++.+++..
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~--l~~~-----------~~~~w~~~f~~~~~~~~~~~~-- 169 (355)
T TIGR00896 106 VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVP--LAQH-----------SGGHWQQALAWWALPALLALL-- 169 (355)
T ss_pred ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-----------hhhhHHHHHHHHHHHHHHHHH--
Confidence 345567777775 689999999999999999988877653 1111 012488888776654433322
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchh
Q 012601 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (460)
Q Consensus 136 l~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (460)
..+||.+..+.++.+ . .+.
T Consensus 170 -~~~~~~~~~~~~~~~--------------------------------------------------~----------~~~ 188 (355)
T TIGR00896 170 -AWIPQVRRRVAANQT--------------------------------------------------T----------TRL 188 (355)
T ss_pred -HHhhhhccccCCCCC--------------------------------------------------C----------CCC
Confidence 234544311100000 0 000
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012601 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (460)
Q Consensus 216 ~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l 295 (460)
..++++++ +.++.+++..++.+.+++.+..|.+.|+.+ ++.+++ ..| ..+..+.+..++
T Consensus 189 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~~~~-------------~~g-~~~~~~~~~~i~ 247 (355)
T TIGR00896 189 TPVRIWRS-----PLAWQVTVFFGLQSGLYYSLIGWLPAILIS--HGASAA-------------TAG-SLLALMQLAQAA 247 (355)
T ss_pred CCchhhcC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHH-------------HHH-HHHHHHHHHHHH
Confidence 01122221 234445555566666666777777777754 233321 111 244556778888
Q ss_pred HHHhHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 296 SSFLIEPMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 296 ~s~i~~~l~~ri-G~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
..++.+++.||+ +||++..++.++.+++++...+.. + .. ....+.+.|++.+.....-
T Consensus 248 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~-~~~~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 248 SALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP----M----------------HG-LWAWALVLGLGQGGAFPLA 306 (355)
T ss_pred HHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh----h----------------hH-HHHHHHHHHHhhhhHhHHH
Confidence 899999999999 566666677777777665444432 1 11 1123456788888777665
Q ss_pred chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCc
Q 012601 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG 421 (460)
Q Consensus 375 ~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~ 421 (460)
.+.+.+..+++ +..|..+|+.+...++...+.|...|.+.+..|++
T Consensus 307 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 307 LTLIGLRSRQA-AQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred HHHHHHhccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55555555442 45688899999999999999999999998887753
No 84
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.28 E-value=3.4e-10 Score=116.18 Aligned_cols=245 Identities=14% Similarity=0.023 Sum_probs=142.4
Q ss_pred chhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhh
Q 012601 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (460)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~i 134 (460)
.....+++.|..+++++++++++.+....+|..+|..+++. ..+. ..||..|.+.++..++...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--l~~~-------------~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 114 GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGL--LTTL-------------FGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc-------------cChHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999998888888888887764 1111 25898998877665544444
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCch
Q 012601 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (460)
Q Consensus 135 tl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (460)
..+..||++..+.+ + + +.+
T Consensus 179 ~~~~~~~~~~~~~~--~-------------------------------------------------------~----~~~ 197 (394)
T PRK11652 179 MARWMPETRPADAR--R-------------------------------------------------------T----RVL 197 (394)
T ss_pred HHHhCCccCccccc--h-------------------------------------------------------h----HHH
Confidence 45567775421100 0 0 011
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 012601 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (460)
Q Consensus 215 ~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~ 294 (460)
..+++.++ .+.++..++..+....+...+..+.+.++.+ .++.++ . ..| +......+..+
T Consensus 198 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---------~----~~~-~~~~~~~~~~~ 257 (394)
T PRK11652 198 ASYRTLLS-----NRRFNCYLLMLIGTLAGIAVFEACSGVLMGA-VLGLSS---------M----TVS-ILFILPIPAAF 257 (394)
T ss_pred HHHHHHHc-----ChHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HcCCCH---------H----HHH-HHHHHHHHHHH
Confidence 22233332 2345554444455555555555555555554 233221 0 122 22334555666
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
+.+.+.+++.||.+++....+...+.+. +......... . .+.+.......+.|++.+.....-
T Consensus 258 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~g~~~~~~~~ 320 (394)
T PRK11652 258 FGAWFAGRPNKRFSTLMWQSVICCLLAG--LLMWIPGWFG-V--------------MNVWTLLVPAALFFFGAGMLFPLA 320 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhc-c--------------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999998844333222222221 1111111000 0 012334555566778777777766
Q ss_pred chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce
Q 012601 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (460)
Q Consensus 375 ~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~ 415 (460)
.+.+.+..| +..|+..++.+....+++.+.+...|.+.
T Consensus 321 ~~~~~~~~~---~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 321 TSGAMEPFP---YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHhhcc---ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 666677766 35699999999999999999988777654
No 85
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.27 E-value=6.4e-10 Score=115.56 Aligned_cols=270 Identities=13% Similarity=0.041 Sum_probs=148.5
Q ss_pred chhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhh
Q 012601 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (460)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~i 134 (460)
.....+++.|..|+++|+++.++......+|..+|..+++. +.+. .+||+.|.+.+++.+++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~--l~~~-------------~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAA--LMHF-------------VHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------------cCHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999988875 2111 26999999988877666655
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCch
Q 012601 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (460)
Q Consensus 135 tl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (460)
..+..||++..+ +++. ..+ ...
T Consensus 187 ~~~~lp~~~~~~-~~~~-------------------------------------------------~~~--------~~~ 208 (413)
T PRK15403 187 LLLAMPETVKRG-AVPF-------------------------------------------------SAK--------SVL 208 (413)
T ss_pred HHHhCCCCcccc-CCCC-------------------------------------------------ChH--------HHH
Confidence 555678764211 0000 000 001
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 012601 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (460)
Q Consensus 215 ~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~ 294 (460)
..++++++ -+.++..++..++.+.+.+.+..+.+.++.+ .++.++. ..|. ..+.......
T Consensus 209 ~~~~~ll~-----~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~-~~g~s~~-------------~~gl-~~~~~~~~~~ 268 (413)
T PRK15403 209 RDFRNVFR-----NRLFLTGAATLSLSYIPMMSWVAVSPVILID-AGGMTTS-------------QFAW-TQVPVFGAVI 268 (413)
T ss_pred HHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-hcCCCHH-------------HHHH-HHHHHHHHHH
Confidence 11222222 2566666677777777777777777777664 3443321 1121 2233344555
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
+.+.+..++.++..++++...+..+..++.+.+.+......+ ..+..++.++++|++.+...+.-
T Consensus 269 i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~---------------~~~~~~~~~~l~~~G~~~~~p~~ 333 (413)
T PRK15403 269 VANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPH---------------VWLWSVLGTSLYAFGIGLIFPTL 333 (413)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccc---------------cHHHHHHHHHHHHHHHHHHhHHH
Confidence 566777776655444444332233333333322221100001 12223445556677776655542
Q ss_pred chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHH
Q 012601 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (460)
Q Consensus 375 ~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~ 438 (460)
.+. + +.+.. ...|+..|+.+......-.+.+...|.+.+. +. ...|...+++..+...
T Consensus 334 ~~~-a-l~~~~-~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 334 FRF-T-LFSNN-LPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GG--RLPFHLLAVVAGVIVV 391 (413)
T ss_pred HHH-H-hccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC--chHHHHHHHHHHHHHH
Confidence 211 1 12221 2357778888887777766666666655444 32 2356555555444433
No 86
>PRK10133 L-fucose transporter; Provisional
Probab=99.24 E-value=2.6e-10 Score=119.50 Aligned_cols=291 Identities=13% Similarity=0.088 Sum_probs=162.9
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccc--------cc-c---chhhc
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPF--------LT-S---RACCA 112 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~--------~~-~---~~~~~ 112 (460)
.+.-++....+....+++.|..|+++|++..+..+....+|..+|.+++...... ..+. +. + .....
T Consensus 125 ~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~-~~~~~~~~~~~~l~~~~~~~w~~~ 203 (438)
T PRK10133 125 FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS-NVPHQSQDVLDKMTPEQLSAYKHS 203 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccchhhhhccChhhHHHHHHH
Confidence 3345566677778899999987777777778888899999999999887531000 0000 00 0 00000
Q ss_pred cccchhHHHHH-HHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCccc
Q 012601 113 ACGNLKAAFLV-AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHES 191 (460)
Q Consensus 113 ~~~~~~~~f~i-~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (460)
...+||.+|.. ..+..++..++.....||.+. ++++ +.
T Consensus 204 ~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~---~~~~--~~------------------------------------ 242 (438)
T PRK10133 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS---DNHS--DA------------------------------------ 242 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---cccc--cc------------------------------------
Confidence 01357777754 333333333333333444221 1000 00
Q ss_pred chhhhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChh
Q 012601 192 DANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHE 271 (460)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~ 271 (460)
. + .......+++++ .|+ ++...+..++...+......|.+.|+-++.++-+|
T Consensus 243 ----------~----~---~~~~~~~~~ll~----~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~------ 294 (438)
T PRK10133 243 ----------K----Q---GSFSASLSRLAR----IRH-WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------ 294 (438)
T ss_pred ----------c----c---cchhhhHHHHHh----Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH------
Confidence 0 0 000111233333 222 23333444444444454555556564333444332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcch
Q 012601 272 VKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQA 351 (460)
Q Consensus 272 ~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (460)
....+.+..+.+...+..++.+++.||+|+|++...+.++.++.++...+.. +
T Consensus 295 --------~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~----~--------------- 347 (438)
T PRK10133 295 --------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG----G--------------- 347 (438)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC----C---------------
Confidence 1122466777888888999999999999999998888766655444332221 1
Q ss_pred hHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHH
Q 012601 352 IKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASL 431 (460)
Q Consensus 352 ~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v 431 (460)
. ..+..+.+.|++.+...+.-+++..+..|+ ..|...|+.++.. +...+.+.+.|.+.+..|+ -...|.+-.+
T Consensus 348 -~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~---~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~-~~~~~~v~~~ 420 (438)
T PRK10133 348 -H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ---DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGN-IPTAELIPAL 420 (438)
T ss_pred -h-HHHHHHHHHHHHHHHHHHHHHHHHHcccch---hhccchhHHhHHh-ccchHHHHHHHHHHHhccc-hHHHHHHHHH
Confidence 1 234556778999999999988888888764 3466778887544 5667777777777776652 1235655554
Q ss_pred HHHHHHHH
Q 012601 432 SALAGGVV 439 (460)
Q Consensus 432 ~~lia~~~ 439 (460)
+.+...++
T Consensus 421 ~~~~~~~~ 428 (438)
T PRK10133 421 CFAVIFIF 428 (438)
T ss_pred HHHHHHHH
Confidence 44444443
No 87
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.22 E-value=1.4e-10 Score=117.59 Aligned_cols=302 Identities=13% Similarity=0.072 Sum_probs=196.9
Q ss_pred HHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccc------c-cccccccccccccchhhcccc
Q 012601 43 GFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAG------A-SGSWHRWFPFLTSRACCAACG 115 (460)
Q Consensus 43 ~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig------~-i~~~~~~~~~~~~~~~~~~~~ 115 (460)
-+.+.+.+.+..+.+-.|+++|.+++++-+|.++..=-+.-+|+++...+. + -..+...+ +.++ ...+.
T Consensus 121 ~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l-~~l~---~~~~~ 196 (438)
T COG2270 121 FLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIIL-LGLP---PADGE 196 (438)
T ss_pred HHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEe-eccC---ccccc
Confidence 335678888999999999999999998888876655445555554433322 0 00011110 0001 11234
Q ss_pred chhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhh
Q 012601 116 NLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANL 195 (460)
Q Consensus 116 ~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (460)
..|..+.++++-.++-.+..++.+||.+....+..
T Consensus 197 ~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~--------------------------------------------- 231 (438)
T COG2270 197 DVRITGLLAALWWLLFALPMILNVHDAEKISSPPP--------------------------------------------- 231 (438)
T ss_pred cchhHHHHHHHHHHHHHhHHHhcccccccccccch---------------------------------------------
Confidence 78889999999888888888888888764210000
Q ss_pred hhhcccccccCCCCCCCchhhHHHHHHHhccC--CHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhh
Q 012601 196 KHISKKAEDTNGSFNDGPGAVLVNLLTSLRHL--PPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVK 273 (460)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~m--P~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~ 273 (460)
+...+.+++++.++++. -+.+.+..++.|+-.=|.++...+.+.|-.. .|+-+.
T Consensus 232 ---------------~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~-~~gls~-------- 287 (438)
T COG2270 232 ---------------TALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAA-DLGLSS-------- 287 (438)
T ss_pred ---------------HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHH-HcCccH--------
Confidence 01234455555444332 2366667777777777888877777665432 344321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhH
Q 012601 274 FYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK 353 (460)
Q Consensus 274 ~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (460)
..+..++ +.-++++++.+++.|++.||+|.|++..++.++..+..+...+.. . .
T Consensus 288 -----~~lll~g-~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~----~----------------~ 341 (438)
T COG2270 288 -----TELLLIG-IALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE----G----------------E 341 (438)
T ss_pred -----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc----c----------------c
Confidence 1222222 345668888999999999999999999988877765443333322 1 2
Q ss_pred HHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHH
Q 012601 354 VASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSA 433 (460)
Q Consensus 354 ~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~ 433 (460)
...+++-.+.|...|...+..-++.++..|+ ++.|.++|++|++--.+-+++|...+.+.+..|.. +..+..-.++-
T Consensus 342 ~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~--~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~-r~g~~~i~vll 418 (438)
T COG2270 342 LDFWILGLLVGTSLGGAQASSRSYLARLVPK--GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS-RAGVLSIIVLL 418 (438)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCC--ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHH
Confidence 3344455678888888888999999999998 45699999999999999999999998888888753 33444444545
Q ss_pred HHHHHHhhhccCCC
Q 012601 434 LAGGVVATLKLPHL 447 (460)
Q Consensus 434 lia~~~~~~~vpe~ 447 (460)
+++.+ ....+|+.
T Consensus 419 ~iGl~-~L~~v~~~ 431 (438)
T COG2270 419 LIGLL-LLLRVKVP 431 (438)
T ss_pred HhhHh-hEEeecCC
Confidence 54544 34566654
No 88
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.21 E-value=2.4e-09 Score=108.85 Aligned_cols=296 Identities=18% Similarity=0.172 Sum_probs=174.3
Q ss_pred HHHHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccch
Q 012601 38 FVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNL 117 (460)
Q Consensus 38 ~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~ 117 (460)
+++.+.+.+..+++++.+.|.-|++.|.+|||+|+++-++.-.|.-+|.+++-.+.+.. ++++- ...+
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l-L~~~s-----------~~rL 157 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL-LDPFS-----------PERL 157 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-ccccC-----------HHHH
Confidence 35567788899999999999999999999999999999999999999999987666541 33221 1123
Q ss_pred hHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhh
Q 012601 118 KAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKH 197 (460)
Q Consensus 118 ~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (460)
..++...+++.++..++.++-+ |++.....+.+
T Consensus 158 ~~v~~~~a~i~~~l~~ia~wg~-E~r~~~~~~~~---------------------------------------------- 190 (403)
T PF03209_consen 158 IQVIQGVALIALLLNLIALWGQ-EPRRSRRAAAA---------------------------------------------- 190 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccCCcccccCC----------------------------------------------
Confidence 3344444444333334444433 44322211000
Q ss_pred hcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHH
Q 012601 198 ISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQ 277 (460)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~ 277 (460)
. .++.++++-|+.++.-|+. +++.+..++.-++++.=-.-.-.|=|| +|+-++.+
T Consensus 191 ----~---------~~~~~f~~a~~~~~~~~~a-~~f~~fl~l~t~a~~~QD~iLEPygg~-Vfgmsv~e---------- 245 (403)
T PF03209_consen 191 ----E---------RPRPPFREAWRQVWASPQA-RRFFVFLFLGTLAFFMQDVILEPYGGE-VFGMSVGE---------- 245 (403)
T ss_pred ----C---------CCCccHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHhhHHHcCCchhH-HcCCCHHH----------
Confidence 0 1223455555555444444 454555555544443322222333333 55554421
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHH
Q 012601 278 GVR-EGAFGLLLNSVVLGVSSFLIE-PMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVA 355 (460)
Q Consensus 278 gv~-~G~~~l~~~si~~~l~s~i~~-~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (460)
-.+ .+.|+ .-.++.=...+ .+.+|.+.+++-.+|....++++.+..+..... +.+.
T Consensus 246 TT~Lta~~~-----~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~-----------------~~~~ 303 (403)
T PF03209_consen 246 TTRLTAFWG-----GGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG-----------------SPWL 303 (403)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-----------------cchH
Confidence 111 11121 11111111122 244678888887788888888876655544221 1445
Q ss_pred HHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec----ccCc----cchhHh
Q 012601 356 SLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL----FGGG----NIPAFV 427 (460)
Q Consensus 356 ~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~----~g~~----~~~~f~ 427 (460)
......++|++.|.+..--.+++-+...+ +..|++||....+..+++-++.+..|.+.|. .+.+ +..+|.
T Consensus 304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~--~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~ 381 (403)
T PF03209_consen 304 FRPGVFLLGLGNGLFTVGALSLMMDLTSA--GRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA 381 (403)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 56666778888887776666666677655 4679999999999999999999988877553 2211 223466
Q ss_pred HHHHHHHHHHHHhh
Q 012601 428 LASLSALAGGVVAT 441 (460)
Q Consensus 428 ~~~v~~lia~~~~~ 441 (460)
+-++..+++.++..
T Consensus 382 lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 382 LEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555443
No 89
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.15 E-value=4.9e-10 Score=111.47 Aligned_cols=323 Identities=12% Similarity=0.095 Sum_probs=170.8
Q ss_pred hHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhee
Q 012601 57 PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTI 136 (460)
Q Consensus 57 p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl 136 (460)
..-++-.|..|..+|..-.-+. .+-.+|.+..-++..+ .... ..||+......+++. ..+..+
T Consensus 185 v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~----vm~~-----------~gwr~~l~~~~~pl~-~~a~f~ 247 (528)
T KOG0253|consen 185 VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWG----VMSN-----------FGWRYLLFTSSTPLM-FAARFL 247 (528)
T ss_pred HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHH----HHHh-----------hhHHHHHHHHHhHHH-HHHHHH
Confidence 3556677889999998777666 7778888887776643 1111 268888777777774 445679
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCccccccccccCC-CCCCCCCCCCCccCCccc--chhhhhhcccccccCCCCCCCc
Q 012601 137 YFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHD-MPAAPNANGNKVESGHES--DANLKHISKKAEDTNGSFNDGP 213 (460)
Q Consensus 137 ~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 213 (460)
+.+||+|+....+++..+|.+.++. +.+.|+. .+...-...-++|+.-++ .++++. .. -++.
T Consensus 248 ~w~~ESpRf~~~~G~~~kAletL~k-----iArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~----~a------~ke~ 312 (528)
T KOG0253|consen 248 VWVYESPRFYLAKGDDYKALETLHK-----IARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS----SA------AKEV 312 (528)
T ss_pred hhcccCcchhhhcCChHHHHHHHHH-----HHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh----cc------cccc
Confidence 9999999876655542222111110 0011111 111000000001110000 011110 00 0122
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeec------C----CCCC-----CCh--hhhhHH
Q 012601 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYH------G----DPKG-----NDH--EVKFYD 276 (460)
Q Consensus 214 ~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~------~----~p~~-----~~~--~~~~y~ 276 (460)
+...++++. +.+|+--+.+-+.|+| +.|.+|....+..+.|+ . .|.. +++ ..+.|.
T Consensus 313 rg~~~nLls------p~lrkttlllw~iwfg-nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYr 385 (528)
T KOG0253|consen 313 RGGTTNLLS------PKLRKTTLLLWRIWFG-NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYR 385 (528)
T ss_pred ccchHhhcC------hHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHH
Confidence 333444443 2223222222223333 23333322111111221 1 1211 111 123342
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHH
Q 012601 277 QGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVAS 356 (460)
Q Consensus 277 ~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (460)
=+++-+.+-+=..++.+.++||+|||+.+..+.++++++.+....... + | .+..
T Consensus 386 --------dllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~--r-------------n---~~tv 439 (528)
T KOG0253|consen 386 --------DLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT--R-------------N---AYTV 439 (528)
T ss_pred --------HHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC--c-------------c---hhHH
Confidence 223334444555788899999999999999999999998876555431 1 1 1211
Q ss_pred HHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHH
Q 012601 357 LVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG 436 (460)
Q Consensus 357 ~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia 436 (460)
+....-+.......+-|..-.|++|...| ++..|.-+.+.=++-++.|++. ...+... +.+..+++.+.+++
T Consensus 440 --llf~arafisg~fqvaYvYtPEVyPTavR--atgvGtcSsmaRIggI~~p~iA-~~~e~s~---sl~i~vy~~~~ila 511 (528)
T KOG0253|consen 440 --LLFTARAFISGAFQVAYVYTPEVYPTAVR--ATGVGTCSSMARIGGIFSPVIA-MRAELST---SLPIFVYGALFILA 511 (528)
T ss_pred --HHHHHHHHHhchheEEEEecCcccchhhh--hcchhhhhhHHhhhhhhhhHHH-HHhccce---eehHHHHHHHHHHH
Confidence 12222233333455667788999998655 5555888888888888888876 2222221 23566677778888
Q ss_pred HHHhhhccCCCCCCCc
Q 012601 437 GVVATLKLPHLSSNSF 452 (460)
Q Consensus 437 ~~~~~~~vpe~~~~~~ 452 (460)
+++++++==|||||+.
T Consensus 512 gIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 512 GIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHheeeeeccCCCCC
Confidence 8887665449999984
No 90
>PRK10054 putative transporter; Provisional
Probab=99.15 E-value=3.4e-10 Score=116.87 Aligned_cols=183 Identities=11% Similarity=0.010 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 012601 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR 305 (460)
Q Consensus 226 ~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~ 305 (460)
++||+.+.+++..|+.+.++.....+.+.|+.+ .++-++ ...| +.+..+.+...+...+.++++|
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-~~g~s~-------------~~~g-~~~s~~~~~~~~~~~~~G~l~D 68 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSR-QYSLSV-------------DLIG-YAMTIALTIGVVFSLGFGILAD 68 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCH-------------HHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888999999999998888888888764 244332 1223 3555667778888999999999
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCC
Q 012601 306 WIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (460)
Q Consensus 306 riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~ 385 (460)
|+|||++..++.++.+++++...+.. + .+..++...+.|.+.+....+-.++++|..|+
T Consensus 69 r~g~k~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~- 127 (395)
T PRK10054 69 KFDKKRYMLLAITAFASGFIAIPLVN----N----------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSS- 127 (395)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHHh----H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-
Confidence 99999999999888887776655543 1 33344445566777776666666777888876
Q ss_pred CCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 386 ~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
+.+|+.+|+.+....++..+.+.+.+.+.+ .|. ..+|...+++.+++.+++.+.+||++
T Consensus 128 -~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~--~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 128 -TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSI--NLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc--CcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456889999999999999999998777654 342 35788888888887766656666553
No 91
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.14 E-value=7.3e-10 Score=117.19 Aligned_cols=310 Identities=13% Similarity=0.072 Sum_probs=166.6
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHH---HhhhhhhhcccccccccccccccccchhhccccchhHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWM---AVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~---glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f 121 (460)
++..++.-....+..+++.|..+ |+|+.++++++..- ++|.++|..+++. +.+. ..||..|
T Consensus 128 ~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~--l~~~-------------~~~~~~f 191 (468)
T TIGR00788 128 FLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGP--LLDK-------------TLTRILF 191 (468)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHH--HHHh-------------cCcchHH
Confidence 34444455556689999999999 66666655554333 4788888777764 2211 2588899
Q ss_pred HHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccc
Q 012601 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 201 (460)
Q Consensus 122 ~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (460)
.+.++..++. .+..+.+||++.....+.++++. . .+. ..... .
T Consensus 192 ~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~-----------------~----------------~~~-~~~~~--~ 234 (468)
T TIGR00788 192 LITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLE-----------------M----------------NMA-LLTLG--V 234 (468)
T ss_pred HHHHHHHHHH-HHHHHhcccccccccccccccch-----------------h----------------hhh-hhhhh--H
Confidence 8887777666 34466788864111000000000 0 000 00000 0
Q ss_pred ccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHH
Q 012601 202 AEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVRE 281 (460)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~ 281 (460)
.+ ..+..++++++.++ .+.+++..+..|+++....... +...+..+...+.+|+ +.|.
T Consensus 235 ~~--------~~~~~~~~l~~~l~--~~~i~~~l~fifl~~~~~~~~~-~~~f~~~~~~lG~s~~---------~~G~-- 292 (468)
T TIGR00788 235 LA--------NVKVQILGLRGAIQ--LLEIAKPLIFIFLSYANLPGAS-GSVFCATTQCLPGGPS---------FSGM-- 292 (468)
T ss_pred HH--------HHHHHHHHHHHHHh--cHHHHHHHHHHHHHHhhcCCCC-ceeEEEEcccCCCCcc---------hhhh--
Confidence 00 01122344454432 2445543333343222111111 0000111112233332 1222
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHH
Q 012601 282 GAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (460)
Q Consensus 282 G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (460)
.....++..++.....+++.+|++.|+++.++.++.+++.+...+..... + ...++|+ .+.+.....
T Consensus 293 ---~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~-~-----~~~gi~~----~~~~~~~~~ 359 (468)
T TIGR00788 293 ---SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRW-N-----LAFGISD----EVFVLGDSI 359 (468)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecc-c-----cccCCCC----eeeeeehhH
Confidence 23335577788888899999999999999999988887665432211000 0 0001111 122333344
Q ss_pred HhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc-----Cccch-hHhHHHHHHHH
Q 012601 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-----GGNIP-AFVLASLSALA 435 (460)
Q Consensus 362 ~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g-----~~~~~-~f~~~~v~~li 435 (460)
+.+++.+.....-..++++..|+ +..|++.|++++...+++.+.+..+|.+.+..| .++.+ ...+..+..++
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~--~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~ 437 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPS--GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLL 437 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCC--CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH
Confidence 55666665555556788888886 456999999999999999999988887777776 33221 24444555555
Q ss_pred HHHHhhhccC
Q 012601 436 GGVVATLKLP 445 (460)
Q Consensus 436 a~~~~~~~vp 445 (460)
...++ +.+|
T Consensus 438 ~l~~~-~llP 446 (468)
T TIGR00788 438 PLPLL-HLLP 446 (468)
T ss_pred HHHHH-HhCC
Confidence 55554 4788
No 92
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.9e-09 Score=109.49 Aligned_cols=288 Identities=14% Similarity=0.178 Sum_probs=182.3
Q ss_pred hhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhe
Q 012601 56 GPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (460)
Q Consensus 56 ~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~it 135 (460)
.|+-..|.--.|+++||+..++=+..-++|+.+...+... ..+. ...+||..|++.+++.++.-++.
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l---a~~~----------~~~~w~~~f~~pgiiaiival~~ 202 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL---AFFA----------FHGGWRAAFYFPGIIAIIVALIL 202 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH---HHHH----------hccchhHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999988888888888877655511 0010 01379999999999998888889
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchh
Q 012601 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (460)
Q Consensus 136 l~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (460)
++..||+|...--++ .++.+.|.. |.. + ..+ | ++..
T Consensus 203 ~~~~rd~Pqs~GLP~----------------ie~~~~d~~---------------e~~--~----~~~---~----~~~l 238 (448)
T COG2271 203 LFLLRDRPQSEGLPP----------------IEEYRGDPL---------------EIY--E----EEK---E----NEGL 238 (448)
T ss_pred HHHhCCCccccCCCC----------------HHHhhcCch---------------hhh--h----hhc---c----CCCc
Confidence 999999984321111 011121110 000 0 000 0 1113
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012601 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (460)
Q Consensus 216 ~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l 295 (460)
+.++++....---|.+|.+|++.++..+.=+.+.--.+.|+.| +-+-+ . ....++...|=+..+.
T Consensus 239 s~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e-~k~~s------------~--~~a~~a~~lfE~agl~ 303 (448)
T COG2271 239 TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSE-VKGFS------------L--VKANWAISLFEVAGLP 303 (448)
T ss_pred cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hcCCC------------H--HHHHHHHHHHHHHhhH
Confidence 4455554432233677889999999988888887777777766 22222 1 1223567778888888
Q ss_pred HHHhHHHHhhhc--CchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcC
Q 012601 296 SSFLIEPMCRWI--GSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (460)
Q Consensus 296 ~s~i~~~l~~ri--G~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (460)
.+++.|+++||+ |||.... +.++...++++...... + .+.++..+++..+|+ +.-
T Consensus 304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~----~--------------~~~~l~~~~l~~iGf----~Iy 361 (448)
T COG2271 304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP----N--------------GSYLLDAILLFIIGF----LIY 361 (448)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC----C--------------ccHHHHHHHHHHHHH----HHh
Confidence 999999999997 7776654 33333333333333222 1 013444444444444 223
Q ss_pred ccchhhh----ccccCCCCCcccchhhhHHHHHH-HHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhh
Q 012601 373 VPFAITA----ELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 373 vp~aLis----~~~~~~~~~~G~~~Gi~n~~~~l-~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~ 441 (460)
-|-.|++ |..|. +..|+..|..+.+.++ +...+....|.+.|..|-+ ..|.+..+.++++.++..
T Consensus 362 GPqmLiGl~a~e~~pK--~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~--g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 362 GPQMLIGLAAAEFVPK--KAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWD--GGFIVLSIAALLAILLLL 431 (448)
T ss_pred hHHHHHHHHHhccccH--hhccchhchhhhHHHHhhHHhcCCcceeeEecCCCc--chHHHHHHHHHHHHHHHH
Confidence 3334444 55564 5679999999999999 9999999999998876643 357776666777666544
No 93
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.09 E-value=8.5e-10 Score=117.93 Aligned_cols=323 Identities=15% Similarity=0.148 Sum_probs=178.7
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+.-++........-.+++|++++++|+.+..+ ......|+.++...++. + ..+||+.+.+.
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~--~---------------~~~Wr~~~~~~ 240 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAY--I---------------TRDWRWLFWII 240 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHH--H---------------HhhHHHHHHHH
Confidence 445677788888999999999999999999999 66666777776665554 1 12799999999
Q ss_pred HHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccc
Q 012601 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
.++.++.++. .+..||+|+|...+++.+++.+.++.. .+.+... .+ .+...++.. .+ +..+
T Consensus 241 ~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~-----a~~n~~~-------~~-~~~~~~~~~-~~---~~~~- 301 (521)
T KOG0255|consen 241 SIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKI-----AKLNGRK-------LS-VKELLRLEL-LL---RPLK- 301 (521)
T ss_pred HHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHH-----HhhcCCC-------CC-cHHHHHHHH-Hh---hHhh-
Confidence 9998767665 566679999987666533322211110 0000000 00 000000000 00 0000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHH
Q 012601 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~ 284 (460)
.....++..+..+++ .|+ +++..+...+.|+.. .+.+|...+..+ .+++| .. .
T Consensus 302 ---~~~~~~~~~~~~l~~----~~~-l~~~~~~~~~~~~~~-~~~y~gl~~~~~-~lg~~----------------~~-~ 354 (521)
T KOG0255|consen 302 ---LLFTEPKISFLDLFR----TPR-LRYRTLYLLFIWFVF-SLVYYGLSLNVS-GLGGN----------------IY-L 354 (521)
T ss_pred ---hhccCCCCchhhhhc----CHH-HHHHHHHHHHHHHHH-hHHHHhhhhhhh-hcCch----------------HH-H
Confidence 000011123344443 333 455445555555321 222222222111 11111 11 0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
...+++.+....-+..+...+++|||.....++.+..++++..++.... . . .....++..++..+
T Consensus 355 ~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~--~------------~-~~~~~~~~~~~~~~ 419 (521)
T KOG0255|consen 355 NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD--L------------G-GWLHWILPLLGKFF 419 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--c------------h-hHHHHHHHHHHHHH
Confidence 1112222333344455788899999999999999999988877766521 0 0 00122333333333
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.. .+ |...+|+.|...| +...|..++..-+..+++|.+.-.... ... ...+...+..+.++++.+..++
T Consensus 420 ~~~~~~-~~-~~~~~el~pt~~r--~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 420 IGSAFN-LI-FLYSAELIPTVVR--NTAVGAISAAARLGSILAPLFPLLLRQ-MFP--LLGLILFGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHH-HH-HHHHHhhccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh-hcc--cchHHHHHHHHHHHHHHHHhcC
Confidence 333322 22 6688999997544 666699999999999998886432222 111 1233335666777777677899
Q ss_pred CCCCCCCcc
Q 012601 445 PHLSSNSFR 453 (460)
Q Consensus 445 pe~~~~~~~ 453 (460)
|||+++.+-
T Consensus 493 pet~~~~l~ 501 (521)
T KOG0255|consen 493 PETKGKPLP 501 (521)
T ss_pred cccCCCCCc
Confidence 999998763
No 94
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.07 E-value=2.2e-09 Score=107.40 Aligned_cols=289 Identities=13% Similarity=0.089 Sum_probs=157.1
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccc-cchhHHHHHHHHHHHHH
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAAC-GNLKAAFLVAVVFLTLC 131 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~-~~~~~~f~i~~i~~~i~ 131 (460)
---+++||+++|+.++|.|+++.+.....-++|.++|+.+|++ +.. |. + +.+ .-+-.+..+..+.+..-
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy--la~-f~----~---~~g~~p~alP~~~v~i~a~~~ 205 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY--LAQ-FS----S---ISGSYPFALPCLLVFILAAGD 205 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH--HHh-hH----h---hhccCchHHHHHHHHHHHHHH
Confidence 3446899999999999999999999999999999999999987 443 11 0 011 12223344455555443
Q ss_pred hhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCC
Q 012601 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFND 211 (460)
Q Consensus 132 ~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (460)
+...+++.||+- +..++++ +.. ..++.+.|+ + +
T Consensus 206 v~~~~~~lpETL-~~rk~~~--~~~---------~~~~~~~~~---------------~----------------~---- 238 (451)
T KOG2615|consen 206 VTFFPWFLPETL-PLRKRND--EHS---------TLQEAADDR---------------L----------------A---- 238 (451)
T ss_pred HHHHHHhCCccc-cchhhcc--ccc---------chhhhhhhh---------------h----------------h----
Confidence 666788899983 2211111 000 000100000 0 0
Q ss_pred CchhhHHHHHHHhccCC----HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 212 GPGAVLVNLLTSLRHLP----PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 212 ~~~~~~~~l~~s~~~mP----~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
..+....+-...++++| ...+++...+.+...-.++.+-++..++.+.-|+-+|. ++|--
T Consensus 239 ~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~---------~~G~v------- 302 (451)
T KOG2615|consen 239 LLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSM---------QQGKV------- 302 (451)
T ss_pred hcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChh---------hheee-------
Confidence 01111111112234444 23445566677777777777767666664334554442 22321
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
++.+.++...+...+.++.-|-+=-.-+.+.+.+-....+++...-.. ...+..+...+.-++-
T Consensus 303 -l~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~---------------~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 303 -LSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR---------------TPVVLYLGSTLKSFST 366 (451)
T ss_pred -eehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc---------------cchhhhHHHHHHHHHH
Confidence 111233333333444444333221122222222222222222211000 0233445555667777
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHH
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLS 432 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~ 432 (460)
+...+--+.|+..+.|++ .+|+.+|+.-+...++..+.|++.|.+..+..+.....+.-++++
T Consensus 367 A~~vt~Lt~Lv~~~~~~~--qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~ 429 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQS--QRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALL 429 (451)
T ss_pred HHhhHHHHHHHHhcCCcc--cchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHH
Confidence 777777778999999985 459999999999999999999999988876554432233333333
No 95
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.05 E-value=1.4e-09 Score=112.54 Aligned_cols=181 Identities=15% Similarity=0.070 Sum_probs=134.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 012601 225 RHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMC 304 (460)
Q Consensus 225 ~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~ 304 (460)
+++|| +.+....++.+.+++.+.-|.+.|+.+ ..+.++ ...| +.+..+.+...+.+.+.++++
T Consensus 8 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~-------------~~~g-l~~~~~~l~~~~~~~~~G~l~ 70 (400)
T PRK11646 8 RNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVD-QLGWAA-------------VMVG-IALGLRQFIQQGLGIFGGAIA 70 (400)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCcH-------------HHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 45777 556788999999998888888877653 223221 1233 344556777777789999999
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccC
Q 012601 305 RWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (460)
Q Consensus 305 ~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~ 384 (460)
||+|||+++..+.++.+++++...+.. + .+..++...+.|++.+.....-.+++.+..|+
T Consensus 71 dr~g~k~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 130 (400)
T PRK11646 71 DRFGAKPMIVTGMLMRAAGFATMAIAH----E----------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRP 130 (400)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999988877665432 1 45556667778888776555556788888886
Q ss_pred CCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 385 SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 385 ~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
+++|+.+|+.+....+++.+.+.+.|.+. ..| ..+.|.+.+++.++++++..+.+||.
T Consensus 131 --~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g--~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 131 --HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD--FRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--HHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 35688999999999999999999888876 444 24578888888777776666667764
No 96
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.02 E-value=3.7e-09 Score=108.38 Aligned_cols=182 Identities=10% Similarity=0.021 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 012601 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (460)
Q Consensus 227 mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~r 306 (460)
|++.++.++...|...++-+.+.-..+.+..+ ++-++. ..| +....+.+...+.+.+.+++.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s~~-------------~~g-~~~s~~~~~~~~~~~~~g~l~dr 64 (382)
T PRK10091 1 MKKVILSLALGTFGLGMAEFGIMGVLTELAHD--VGISIP-------------AAG-HMISYYALGVVVGAPIIALFSSR 64 (382)
T ss_pred CcchHHHHHHHHHHHHhhHHHHHhChHHHHHH--cCCCHH-------------HHh-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 56777788888888887766666666665443 333211 112 34556777888899999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCC
Q 012601 307 IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (460)
Q Consensus 307 iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~ 386 (460)
+|||+++.++.++.+++.++..+.. + .+..++...+.|++.+.......+++++..|+
T Consensus 65 ~g~r~~~~~~~~~~~~~~~l~~~~~----~----------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-- 122 (382)
T PRK10091 65 YSLKHILLFLVALCVIGNAMFTLSS----S----------------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-- 122 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhC----c----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh--
Confidence 9999999999999888776655543 2 55666677889998887777767788888876
Q ss_pred CCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 387 GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 387 ~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
+++++.+|+......+++.+.+...+.+.+..| ..++|.+.++.+++..+...+.+||.+
T Consensus 123 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 123 GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS--WRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 356888999999999999998887776666555 345788888887777776667788864
No 97
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.01 E-value=1.3e-08 Score=106.81 Aligned_cols=284 Identities=12% Similarity=0.031 Sum_probs=166.0
Q ss_pred cchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccc-ccccccccccc-----chhhccccchhHHHHHHHHH
Q 012601 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG-SWHRWFPFLTS-----RACCAACGNLKAAFLVAVVF 127 (460)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~-~~~~~~~~~~~-----~~~~~~~~~~~~~f~i~~i~ 127 (460)
...+....+....|+++||+++++.....++|..++..+.-.. .+. .+...+. ..++ ...||..+.+-.++
T Consensus 144 ~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~-l~~~~G~~~~~~~~g~--~~~~~~~~~~~~~~ 220 (462)
T PRK15034 144 NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP-VFAFLGVNGVPQADGS--VMSLANAAWIWVPL 220 (462)
T ss_pred hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHhccccccccccc--hHHHHHHHHHHHHH
Confidence 4457888899999999999999999877778887665544210 000 0000000 0000 12366666665555
Q ss_pred HHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 012601 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (460)
Q Consensus 128 ~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (460)
.+++.++..+..+|.|. + +
T Consensus 221 ~iv~~i~~~~~~~~~~~---~--~-------------------------------------------------------- 239 (462)
T PRK15034 221 LAIATIAAWSGMNDIAS---S--R-------------------------------------------------------- 239 (462)
T ss_pred HHHHHHHHHHhCCCccc---c--c--------------------------------------------------------
Confidence 54444444444444331 0 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHH
Q 012601 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (460)
Q Consensus 208 ~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~ 287 (460)
.++++..+ ..++|+ .|.+|+..+..+-++..+.+|++.|..+ .|.. . ...+ ...
T Consensus 240 -------~~~~~~~~-vlk~~~-~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~-----------~-~~l~----~~~ 293 (462)
T PRK15034 240 -------ASIADQLP-VLQRLH-LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPD-----------V-NILR----LAF 293 (462)
T ss_pred -------cCHHHHHH-HhCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCh-----------H-HHHH----HHH
Confidence 01122222 223443 5777888888877788788788777543 3311 0 1111 122
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcc-hhHHHHHHHHHHhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQ-AIKVASLVVFTLLGFP 366 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Gi~ 366 (460)
+..++..+...+.|+++||+|+|++..++.+.++++...+..... . .... ++ ......++++...|++
T Consensus 294 l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp---~----~~~~----~~~~~~~~~~~l~~~~G~g 362 (462)
T PRK15034 294 FGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP---G----TGSG----NFIAFYAVFMGLFLTAGLG 362 (462)
T ss_pred HHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc---c----cccc----HHHHHHHHHHHHHHHhccc
Confidence 344567777788999999999999999888777665533222210 0 0000 00 0122233344556776
Q ss_pred hhhhcCccchhhhccccC------C-------------CCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHh
Q 012601 367 LAITYSVPFAITAELTAD------S-------------GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFV 427 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~------~-------------~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~ 427 (460)
.|.+ |.++.+++|+ + ++..|...|+.+..-.++-++.|..+|...+..|+. ...|.
T Consensus 363 ngsv----fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~-~~~~~ 437 (462)
T PRK15034 363 SGST----FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP-VGAMK 437 (462)
T ss_pred chHH----HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc-HHHHH
Confidence 6654 4456666653 0 125688889999999998899999899888888864 45677
Q ss_pred HHHHHHHHHHHHhhhc
Q 012601 428 LASLSALAGGVVATLK 443 (460)
Q Consensus 428 ~~~v~~lia~~~~~~~ 443 (460)
...++-+++.++.+..
T Consensus 438 ~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 438 VFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766665543
No 98
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.00 E-value=1.4e-08 Score=105.69 Aligned_cols=267 Identities=13% Similarity=0.068 Sum_probs=149.4
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccc-------cccchh-----hccc
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPF-------LTSRAC-----CAAC 114 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~-------~~~~~~-----~~~~ 114 (460)
.-++....+.+..+++.+..|+++|++..++.+...++|..+|..++... ....... ..+... ....
T Consensus 104 ~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (410)
T TIGR00885 104 LTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL-ILSNLPHQSQDVLDKLSPEELSAIKHSDL 182 (410)
T ss_pred HHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence 44455666777889999999999999999999999999999998887541 0000000 000000 0001
Q ss_pred cchhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchh
Q 012601 115 GNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDAN 194 (460)
Q Consensus 115 ~~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (460)
.+||.+|.+.+++.++..++. ...|+++..+ ++++
T Consensus 183 ~~w~~~fl~~a~~~~~~~~~~-~~~~~p~~~~-~~~~------------------------------------------- 217 (410)
T TIGR00885 183 ASVQTPYMIIGAVVLAVALLI-MLTKMPALNH-SDAK------------------------------------------- 217 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCc-cccc-------------------------------------------
Confidence 359999987776655443322 1222221100 0000
Q ss_pred hhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhh
Q 012601 195 LKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKF 274 (460)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~ 274 (460)
. + ...+.++++++. +.++..++..|+-..+......|.++|..+...+.+
T Consensus 218 -------~----~----~~~~~~~~~~~~-----~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~---------- 267 (410)
T TIGR00885 218 -------Q----I----SFSASLSRLARI-----RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMT---------- 267 (410)
T ss_pred -------c----c----cchhhHHHHHhC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----------
Confidence 0 0 011122333332 234445666666544455666777777654221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHH
Q 012601 275 YDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKV 354 (460)
Q Consensus 275 y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (460)
++.. + ..+..+-....+.-++.+++.||+++|+++.+...+.+++.++..+.. + .
T Consensus 268 --~~~a-~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~----~----------------~- 322 (410)
T TIGR00885 268 --AGFA-A-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG----G----------------H- 322 (410)
T ss_pred --HHHH-H-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC----C----------------h-
Confidence 1110 1 112222345567788889999999999988777666665554433322 1 1
Q ss_pred HHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecc
Q 012601 355 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (460)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~ 418 (460)
.....+.+.|+..+...+.-|++..+..+++. ....+.+-++. ++-.+.|.++|.+.|..
T Consensus 323 ~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~---~~~s~~l~~~~-~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 323 VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT---KYGAAGLVMAI-IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHH-hccchHHHHHHHHHHHh
Confidence 23455566777777777777778888876532 22224444443 88888899999888843
No 99
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.00 E-value=1.8e-09 Score=112.17 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+.+.++.+...+..++.++++||+|||+++..+.++++++.+...+.. + ....++.-.+.
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----~----------------~~~l~~~r~l~ 114 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT----S----------------MTQFLIARFIQ 114 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC----C----------------HHHHHHHHHHH
Confidence 345566677788889999999999999999999988888776655443 2 44556666778
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.+....+.++++.|..|+ +..++.+|+.+....++..+.+.+.+.+.+..| ..+.|.+.+++++++.+..++.
T Consensus 115 Gi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g--w~~~f~~~~~~~~i~~~~~~~~ 190 (413)
T PRK15403 115 GTSICFIATVGYVTVQEAFGQ--TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH--WKVLFAIIAVMGLIAFVGLLLA 190 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 887776666677888888886 345788999999999999999888777766555 3457988888888887766677
Q ss_pred cCCCCC
Q 012601 444 LPHLSS 449 (460)
Q Consensus 444 vpe~~~ 449 (460)
+||++.
T Consensus 191 lp~~~~ 196 (413)
T PRK15403 191 MPETVK 196 (413)
T ss_pred CCCCcc
Confidence 898764
No 100
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.99 E-value=6.9e-09 Score=109.30 Aligned_cols=295 Identities=15% Similarity=0.181 Sum_probs=182.2
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
..++..+.......+..--.|+++|++..++.....-+|.+++.-+++. +-+. ..+|+.+|++-++
T Consensus 138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~--lc~s------------~~GW~sifY~~g~ 203 (466)
T KOG2532|consen 138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGL--LCES------------SLGWPSIFYVFGI 203 (466)
T ss_pred hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHH--Hhcc------------CCCCchHHHHHHH
Confidence 3334445555677788888999999999999999999999998866654 2111 1369999999888
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+.++..++-.++..|+|.....-.+ ++.+.+++.+.+
T Consensus 204 ~g~i~~~~w~~~~~d~P~~h~~is~----------~El~~I~~~k~~--------------------------------- 240 (466)
T KOG2532|consen 204 VGLIWFILWFLFYSDSPSKHPNISE----------KELKYIEKGKSE--------------------------------- 240 (466)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCCH----------HHHHHHHhcccc---------------------------------
Confidence 8777777777888888843211100 000001111100
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l 286 (460)
+..++....++++++++ ++++.+++.+|..-.+.+.++.|.+.|+.| +.+-|-+ +.|. ...+-.
T Consensus 241 ~~~~~~~~vP~~~i~ts-----~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~v~---------~~G~-~salP~ 304 (466)
T KOG2532|consen 241 AHVKKKPPVPYKAILTS-----PPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFDVR---------ETGF-LSALPF 304 (466)
T ss_pred cccCCCCCCCHHHHHcC-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCChh---------hhhH-HHHHHH
Confidence 00000123467888876 588999999999999999999999999996 6665532 2222 112222
Q ss_pred HHHHHHHHHHHHhHHHHhhhcC--------chhHH-HHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHH
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIG--------SRLVW-AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG--------~r~l~-~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (460)
+ ...+..++.+.++||+- +||++ .++....+++++.+.++... + .........
T Consensus 305 l----~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~--~------------~~~a~~~l~ 366 (466)
T KOG2532|consen 305 L----AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDE--H------------RLLAVILLT 366 (466)
T ss_pred H----HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCC--c------------chHHHHHHH
Confidence 3 33444555555555542 23444 37888888877776666521 1 000112222
Q ss_pred HHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc--CccchhHhHHHHHHHH
Q 012601 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG--GGNIPAFVLASLSALA 435 (460)
Q Consensus 358 ~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g--~~~~~~f~~~~v~~li 435 (460)
+.+++.|+..+-+ ..-...+. .+..|..||+.|...++++++.|.+.|.+++ .+ .+-..+|.+.+++.++
T Consensus 367 ~~~~~~g~~~~Gf-----~~~~~~~a--pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~t~~eW~~VF~i~a~i~~~ 438 (466)
T KOG2532|consen 367 IAIGLSGFNISGF-----YKNHQDIA--PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DNTREEWRIVFLIAAGILIV 438 (466)
T ss_pred HHHHHcccchhhh-----Hhhhhhcc--chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CCCHHHHHHHHHHHHHHHHH
Confidence 2223333333322 22233312 2578999999999999999999999999985 22 1224568888888888
Q ss_pred HHHHh
Q 012601 436 GGVVA 440 (460)
Q Consensus 436 a~~~~ 440 (460)
+.++-
T Consensus 439 ~~i~f 443 (466)
T KOG2532|consen 439 GNIIF 443 (466)
T ss_pred hchhe
Confidence 77643
No 101
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.98 E-value=6.4e-09 Score=103.77 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHH
Q 012601 234 VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVW 313 (460)
Q Consensus 234 l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~ 313 (460)
+++..|+..++...+....+.++.+ -++.++. ..| +....+.+...+.+.+.+++.||+|||+++
T Consensus 1 L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-------------~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l 65 (352)
T PF07690_consen 1 LFLAFFLSGFGFSIISPALPLYLAE-ELGLSPS-------------QIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVL 65 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHC-CSTTTSH-------------CHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeE
Confidence 3566677766666655555533333 2443321 122 345567778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccch
Q 012601 314 AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAI 393 (460)
Q Consensus 314 ~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~ 393 (460)
.++.++.+++.+...+.. + .+..++...+.|++.+.......+++.|..|+ +++++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~ 123 (352)
T PF07690_consen 66 IIGLLLFALGSLLLAFAS----N----------------FWLLLIARFLLGIGSGFFSPASNALIADWFPP--EERGRAF 123 (352)
T ss_dssp HHHHHHHHHHHHHHHHHC----C----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--CCHHHHH
T ss_pred eehhhhhhhHHHHhhhhh----h----------------HHHHhhhccccccccccccccccccccccchh--hhhhhcc
Confidence 999999988844333322 2 34677777889999999999999999999997 4679999
Q ss_pred hhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 394 GVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 394 Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
|+.+....++.++.+.+.+.+.+..+. .++|.+.+++.++++++...+.|+
T Consensus 124 ~~~~~~~~~g~~~g~~l~~~l~~~~~~--~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 124 GILSAGFSLGSILGPLLGGFLISYFGW--RWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHCHH--CCHHHHHHHHHHHHHHHHHCCC--
T ss_pred ccccchhhhhhhcccchhhhhhhcccc--ccccccccchhhhhhhhHhhhhhh
Confidence 999999999999999998888766663 357999999999888754444443
No 102
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.97 E-value=4.2e-09 Score=90.22 Aligned_cols=136 Identities=20% Similarity=0.240 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
.+++...+.+.+.+++.||+|||+.+..+....+++.+...+.. + .+...+...+.|++.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~ 65 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS----N----------------ITVLIIARFLQGFGA 65 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHH
Confidence 34556778899999999999999999998888877766544432 1 455666677899999
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
+.......+++.|..|++ .+|+.+|+.+....+++.+.+...+.+.+..+. ...|.+.+++.+++.+...++.||+
T Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 66 AFALVAGAALIADIYPPE--ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGW--RAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHhHHHHHHHHCChh--hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccch--HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 988888888999999874 568889999999999999999988888766552 3478888888888888777778875
No 103
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.97 E-value=6.1e-09 Score=110.80 Aligned_cols=170 Identities=8% Similarity=0.022 Sum_probs=125.9
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 012601 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR 305 (460)
Q Consensus 226 ~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~ 305 (460)
+.||.++.++.+.++.-++++.+..+...|+.++ ++-+. ....+....|.....+...+.+++.|
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-lg~~~--------------~~a~~i~~~~~~~~~~~~~~~G~laD 75 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-LGFSQ--------------EQAFITFGAFAALVYGLISIGGYVGD 75 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH--------------HHHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 4688999999998888788877777777777653 33221 11123444455556666778999999
Q ss_pred h-cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccC
Q 012601 306 W-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (460)
Q Consensus 306 r-iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~ 384 (460)
| +||||++.+|.++++++.+..++.. + .....++..++.|++.|.....+.++++|.+|+
T Consensus 76 r~~G~r~~~~~g~~~~~~g~~~~~~~~----~---------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~ 136 (489)
T PRK10207 76 HLLGTKRTIVLGAIVLAIGYFMTGMSL----L---------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPP 136 (489)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhc----c---------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCC
Confidence 9 9999999999999998877666543 1 012233556678999999999999999999987
Q ss_pred CCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHH
Q 012601 385 SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASL 431 (460)
Q Consensus 385 ~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v 431 (460)
++++++..+++....+.++..+.+.+.|.+.+..| .++.|.+.++
T Consensus 137 ~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i 181 (489)
T PRK10207 137 KDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGA 181 (489)
T ss_pred CchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 65456778899999999999999998888877776 3457877655
No 104
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.96 E-value=6.8e-09 Score=105.34 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+....+.+...+..++.+++.||+|||+.+..+.++.+++.+...+.. + .+...+...+.
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~ 103 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN----N----------------IETLLVLRFVQ 103 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHH
Confidence 345567777888899999999999999999999888888776655443 2 45566677789
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.+.....-.+++.|+.|+ +++|+.+|+.+....+++.+.+.+.+.+.+..+. ...|.+.+++.++..+...+.
T Consensus 104 g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 104 AFGASAGSVISQALVRDIYPG--EELSRIYSILMPVLALAPAVAPLLGGYILVWLSW--HAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HcchhHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 999998888888999999986 4568899999999999999999988877766553 346888788777777777677
Q ss_pred cCCCCCCC
Q 012601 444 LPHLSSNS 451 (460)
Q Consensus 444 vpe~~~~~ 451 (460)
.||++.+.
T Consensus 180 ~~~~~~~~ 187 (385)
T TIGR00710 180 LPETLPYE 187 (385)
T ss_pred CCCCCCCc
Confidence 88876543
No 105
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.96 E-value=5.5e-10 Score=114.07 Aligned_cols=344 Identities=14% Similarity=0.080 Sum_probs=189.3
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccccccc--ccccccccccchhhccccchhHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGS--WHRWFPFLTSRACCAACGNLKAAFL 122 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~--~~~~~~~~~~~~~~~~~~~~~~~f~ 122 (460)
+++.+.+..=..-+-+..+|.+.+..||.-.++.=.|.|+|.+.|..+..+.. ..+-++ ..+.......-||..|.
T Consensus 152 ~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~--~~~~~~~ld~vWRl~~g 229 (538)
T KOG0252|consen 152 FLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN--GPSTYPHLDGVWRIIFG 229 (538)
T ss_pred HHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCC--CCCCchHHHHHHHHHHH
Confidence 55666766655556667789999999998888777778888877776664410 111111 00112233457999999
Q ss_pred HHHHHHHHHhhheeEEeeccCCCCCCCCC-CCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhccc
Q 012601 123 VAVVFLTLCALVTIYFADEVPLTVNQPNH-LTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 201 (460)
Q Consensus 123 i~~i~~~i~~~itl~~v~E~p~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (460)
+++++.++++. .=+.+||+++......+ .+.+......+.+.. ++.+. +.
T Consensus 230 lg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~---~~~~~-------------------------~~ 280 (538)
T KOG0252|consen 230 LGAVPALLVLY-FRLKMPETARYTALVSKKLKQAAGDMKKVLSVD---IEAES-------------------------TA 280 (538)
T ss_pred HHHHHHHHHHH-hhhcCCcchhHHHHhhcCHhhhhhccccccccc---cchhh-------------------------cc
Confidence 99999976665 46789999865421111 011110000000000 00000 00
Q ss_pred ccccCCCCCCCchhh---HHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHH
Q 012601 202 AEDTNGSFNDGPGAV---LVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQG 278 (460)
Q Consensus 202 ~~~~~~~~~~~~~~~---~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~g 278 (460)
++......++ |...+..+ --+.+.-.|..-|+-=++.++.-+|..+.+....+ .|.++ .|++-
T Consensus 281 -----~~~~~~~~~~~~~F~~~f~~~--hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~--~~~~~-----~~~~~ 346 (538)
T KOG0252|consen 281 -----ESDVPPPSNSFGLFSRLFLRW--HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGV--IPSAN-----TYHEL 346 (538)
T ss_pred -----ccCCCCcccccchHHHHHHHH--HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhcc--CCCcc-----hHHHH
Confidence 0000011111 22223222 11233334555555555666666666665543222 23221 12221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHH
Q 012601 279 VREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (460)
Q Consensus 279 v~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (460)
.+..-+.+++-....+-...+...++|++|||.+-+.|.+++++.++.++... |..++... ....+.+..
T Consensus 347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y----~~~~~~~G------f~v~y~l~~ 416 (538)
T KOG0252|consen 347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPY----NQLENTIG------FVVLYSLTF 416 (538)
T ss_pred HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCc----ccccccCc------eeehHHHHH
Confidence 12222232222222222344556678999999999999999998777666544 20111110 011122222
Q ss_pred HHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee-----cccCccchhHhHHHHHH
Q 012601 359 VFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA-----LFGGGNIPAFVLASLSA 433 (460)
Q Consensus 359 ~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~-----~~g~~~~~~f~~~~v~~ 433 (460)
+++=+|=. +++. .+-+|..|. |-+|+.-|+--.+--.+-++....++++.+ ..|. ..+|+..+.++
T Consensus 417 ff~NFGPn-~ttf----ivpaE~FPa--rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~--~~v~~i~~~~~ 487 (538)
T KOG0252|consen 417 FFGNFGPN-ATTF----IVPAEIFPA--RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGV--RNVFIILAGCM 487 (538)
T ss_pred HHHhcCCC-ceeE----EeehhhchH--HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccc--hHHHHHHHHHH
Confidence 22223322 2222 345899997 566999999999999999999999888877 5553 34799999999
Q ss_pred HHHHHHhhhccCCCCCCCcc
Q 012601 434 LAGGVVATLKLPHLSSNSFR 453 (460)
Q Consensus 434 lia~~~~~~~vpe~~~~~~~ 453 (460)
+++.++ .+++|||||||..
T Consensus 488 ~~gi~~-T~l~pEtk~~~le 506 (538)
T KOG0252|consen 488 LLGILF-TLLIPETKGKSLE 506 (538)
T ss_pred HHhHhe-eEEeecccccCHH
Confidence 888774 6889999999975
No 106
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.95 E-value=3.7e-09 Score=105.92 Aligned_cols=181 Identities=10% Similarity=0.013 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchh
Q 012601 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRL 311 (460)
Q Consensus 232 ~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~ 311 (460)
|.++..+++..++........+.|+.+ ++.++ ...| +...++.+...+.+.+.+++.||+|||+
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~-------------~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 65 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLA--GTGSA-------------SVLS-LAALAGMLPYVVLSPIAGALADRYDRKK 65 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH--hhccH-------------HHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhH
Confidence 345677777777776666666665543 22221 1222 3556677888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCccc
Q 012601 312 VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGL 391 (460)
Q Consensus 312 l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~ 391 (460)
++.++.++.+++.+...+..... + .+.+..++...+.|++.+.....-.++++|..|++ ++|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~ 128 (365)
T TIGR00900 66 VMIGADLIRAVLVAVLPFVALLG-G--------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE--QLTQ 128 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-C--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHH
Confidence 99999888877766555443110 0 02455666777889999988888889999999874 5688
Q ss_pred chhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc-cCCC
Q 012601 392 AIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK-LPHL 447 (460)
Q Consensus 392 ~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~-vpe~ 447 (460)
.+|+.+....+++++.+.+.+.+.+..|. ...|.+.++..+++.++.... .||.
T Consensus 129 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 129 ANSLSQAVRSLFYIVGPGIGGLMYATLGI--KWAIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999988888776653 346887777777666554433 4443
No 107
>PRK10504 putative transporter; Provisional
Probab=98.93 E-value=7.3e-09 Score=108.96 Aligned_cols=184 Identities=10% Similarity=0.016 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
..+.+++..|+..+....+....+.+..+ ++.++. ..| +....+.+...+...+.+++.||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~-------------~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS--LGESPL-------------HMH-MVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH--hCcCHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34556777777776666666666666543 443321 122 34455667777888999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCc
Q 012601 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (460)
Q Consensus 310 r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~ 389 (460)
|++++.+.++++++.+...+.. + .+..++...+.|++.+.....-.+++.|+.|+ +.+
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~ 132 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSG----T----------------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPR--EQY 132 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----C----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH--HHH
Confidence 9999999888887776544432 2 44566677889999998877778888999886 356
Q ss_pred ccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCCCCcc
Q 012601 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSNSFR 453 (460)
Q Consensus 390 G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~~~~~ 453 (460)
|+.+|+.+....++..+.+.+.|.+.+..| ..+.|.+...+++++.+......|+.+.++-|
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r 194 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYAS--WHWIFLINIPVGIIGAIATLMLMPNYTMQTRR 194 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 888999999999999999998888877665 34578888888888877776777876655433
No 108
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.93 E-value=9e-09 Score=108.22 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhH
Q 012601 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 312 (460)
Q Consensus 233 ~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l 312 (460)
.+++..++..+.........+++..+ ++.+++ ..| +....+.+...+...+.+++.||+|||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~-------------~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 69 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGD--LGSSLS-------------QVQ-WVITSYMLANAISIPLTGWLAKRFGTRRL 69 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChh-------------hhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHH
Confidence 34556666666555555555555543 443321 122 45567788888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccc
Q 012601 313 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLA 392 (460)
Q Consensus 313 ~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~ 392 (460)
+.++.++++++.+...+.. + ....++...+.|++.+.....-.+++.|..|+ +.+|+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~--~~r~~~ 127 (485)
T TIGR00711 70 FLISTFAFTLGSLLCGVAP----N----------------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP--EKRGRA 127 (485)
T ss_pred HHHHHHHHHHHHHHHhCcC----C----------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH--HHHHHH
Confidence 9999988888776555433 2 45566777889999998888888999999986 356889
Q ss_pred hhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCCC
Q 012601 393 IGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSN 450 (460)
Q Consensus 393 ~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~~ 450 (460)
+|+.++...+++.+.+.+.|.+.+..|. .+.|++.+.+++++.++..+.+||.+.+
T Consensus 128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w--~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
T TIGR00711 128 MAIWGLTVLVAPALGPTLGGWIIENYHW--RWIFLINVPIGIIVVVVAFFILPRDKPA 183 (485)
T ss_pred HHHHHHHHHHHhhhhhccHhHhccCcCc--eehhhhhhHHHHHHHHHHHHHcCCcccc
Confidence 9999999999999999988888776653 3578888888888777777778876543
No 109
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.91 E-value=6.8e-09 Score=107.13 Aligned_cols=177 Identities=13% Similarity=0.097 Sum_probs=124.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 012601 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (460)
Q Consensus 227 mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~r 306 (460)
|+|.++.+++.+|++-++-..+......++.+ ++.++ . .. .+....+.+...+.+.+.|++.||
T Consensus 1 ~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~-----------~--~~-~~~~~~~~l~~~l~~~~~G~laDr 64 (393)
T PRK11195 1 MSKGFYAIMAAQFFSALADNALLFAAIALLKE--LHYPD-----------W--SQ-PLLQMFFVLAYIVLAPFVGAFADS 64 (393)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcH-----------H--HH-HHHHHHHHHHHHHHHhhhhHhhhc
Confidence 45677888999999877644444334433322 22221 1 12 245567788888899999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCC
Q 012601 307 IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (460)
Q Consensus 307 iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~ 386 (460)
+|||+++..+.++++++.+...+.. + . ++...+.|++.+.......+++.|++|+
T Consensus 65 ~grr~vl~~~~~~~~~~~~~~~~~~----~----------------~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~-- 119 (393)
T PRK11195 65 FPKGRVMFIANGIKLLGCLLMLFGI----H----------------P---LLAYGLVGIGAAAYSPAKYGILTELLPG-- 119 (393)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHH----H----------------H---HHHHHHHHHHHHHHHHHHHHHHHHHcCH--
Confidence 9999999999998887665443322 1 2 3344578999999999999999999997
Q ss_pred CCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 387 GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 387 ~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
+++++.+|+++....+++++.|.+.|.+.+.. ....+.+.+++.+++.+ ..+.+||.+
T Consensus 120 ~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~---~~~~~~i~~~~~~~~~~-~~~~l~~~~ 177 (393)
T PRK11195 120 EKLVKANGWMEGSTIAAILLGTVLGGALADPH---AEAALAVCALIYLLAAL-FNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 45799999999999999999999988887643 22345444444444433 446678754
No 110
>PRK03545 putative arabinose transporter; Provisional
Probab=98.91 E-value=1.5e-08 Score=104.05 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+.+.+++.||+|||+++.++.++++++.+...+.. + .+..++...+.|
T Consensus 49 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~r~~~G 108 (390)
T PRK03545 49 MLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW----N----------------FTVLLISRIGIA 108 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHH
Confidence 44566777778889999999999999999999999888877666554 2 455566666788
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......+++++..|++ ++|+.+|+++....+++.+.+.+.+.+.+..|. .+.|.+.++++++..++..+.+
T Consensus 109 ~~~~~~~~~~~~~i~~~~~~~--~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw--~~~f~~~~~~~~l~~~~~~~~~ 184 (390)
T PRK03545 109 FAHAIFWSITASLAIRVAPAG--KKAQALSLLATGTALAMVLGLPLGRVIGQYLGW--RTTFLAIGGGALITLLLLIKLL 184 (390)
T ss_pred HHHHHHHHHHHHHHHHhCChh--hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHhC
Confidence 888877777778999999874 568899999999999999999988877766653 4578888888888777666667
Q ss_pred CCCC
Q 012601 445 PHLS 448 (460)
Q Consensus 445 pe~~ 448 (460)
||.+
T Consensus 185 ~~~~ 188 (390)
T PRK03545 185 PLLP 188 (390)
T ss_pred CCCC
Confidence 7653
No 111
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.90 E-value=2e-08 Score=107.13 Aligned_cols=186 Identities=10% Similarity=0.012 Sum_probs=129.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 012601 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR 305 (460)
Q Consensus 226 ~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~ 305 (460)
+.|+.++.++...++..++++.+..+.+.|+.+ .++-++. +. .+....+.........+.+++.|
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~----------~a----~~~~~~~~~~~~~~~~~~G~LaD 82 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVK-QLGMSEA----------DS----ITLFSSFSALVYGLVAIGGWLGD 82 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH----------HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888899999999999988888888888764 2443311 11 11222233334444567899999
Q ss_pred h-cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccC
Q 012601 306 W-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (460)
Q Consensus 306 r-iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~ 384 (460)
| +|||+++.++.+++++++..+.+.. + ......+...+.|++.+.....+.+++++.+|+
T Consensus 83 r~~G~r~~~~~g~~~~~ig~~l~~~~~----~---------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~ 143 (500)
T PRK09584 83 KVLGTKRVIMLGAIVLAIGYALVAWSG----H---------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK 143 (500)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhc----c---------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC
Confidence 9 5999999999999988776555432 1 123344455678888888888888999999986
Q ss_pred CCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHH---HHHhhhccCCC
Q 012601 385 SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG---GVVATLKLPHL 447 (460)
Q Consensus 385 ~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia---~~~~~~~vpe~ 447 (460)
++++++..+++.+.+..++..+++.+.|.+.+..|. .+.|...++..+++ .++....+||.
T Consensus 144 ~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~--~~~F~i~~i~~~i~~i~~~~~~~~~~~~ 207 (500)
T PRK09584 144 DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW--SVAFALSVVGMLITVVNFAFCQRWVKQY 207 (500)
T ss_pred CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence 544455678999999999999999998888776663 45788877644443 33444455543
No 112
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.90 E-value=2e-08 Score=106.50 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=131.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhccccccce-eecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 012601 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGRE-VYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMC 304 (460)
Q Consensus 226 ~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~-vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~ 304 (460)
+.|+.++.++.+.++.-++++....+.+.|+.+. .++-++ - ..| +.+..+++...+.+++.+++.
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~---------~----~ag-~~~~~~~~~~~~~~~~~G~la 72 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQ---------E----QAF-IIFGAYSALVYLLTSVGWWFG 72 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH---------H----HHH-HHHHHHHHHHHHHHhhHHHHH
Confidence 4789999999999988888877777778776542 122221 1 122 345567778888999999999
Q ss_pred hh-cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhcccc
Q 012601 305 RW-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTA 383 (460)
Q Consensus 305 ~r-iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~ 383 (460)
|| +|||++..++.++.+++++.+.+.. + .....+...+.|++.+.......+++++.+|
T Consensus 73 Dr~~G~~~~l~~~~~~~~~g~~~~~~~~----~----------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~ 132 (475)
T TIGR00924 73 DRVWGTKKTMVLGGIVLMLGHFMLAMSI----Y----------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYE 132 (475)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhcc----c----------------HhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence 99 8999999999999888877655432 1 3344455567889988888888899999998
Q ss_pred CCC-CCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHH
Q 012601 384 DSG-GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (460)
Q Consensus 384 ~~~-~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~ 438 (460)
+++ ++++...++.+....++.++++.+.|.+.+..|. ...|...++..+++.+
T Consensus 133 ~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~--~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 133 RGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY--HVGFNLAAVGMVIGLL 186 (475)
T ss_pred CCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHH
Confidence 643 2467788999999999999999998888776653 3578777766555544
No 113
>TIGR00895 2A0115 benzoate transport.
Probab=98.89 E-value=1.8e-08 Score=102.14 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+++.+++.||+|||+++..+.++.+++.+...+.. + .+..++...+.|
T Consensus 57 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g 116 (398)
T TIGR00895 57 LFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT----N----------------VTQLLILRFLAG 116 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc----c----------------hHHHHHHHHHHh
Confidence 34456667788899999999999999999999888887776555433 1 445666777899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......++++|..|++ .+|+.+|+.+....+++++.+.+.+.+.+..|. ...|.+.+++.++..+...+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 117 LGLGGLMPNLNALVSEYAPKR--FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW--RSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred cccccchhhHHHHHHHHcCHH--hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc--eeehhhhhhHHHHHHHHHHHhC
Confidence 999988888899999999863 568889999999999999999988888776663 3467777766666666666777
Q ss_pred CCCC
Q 012601 445 PHLS 448 (460)
Q Consensus 445 pe~~ 448 (460)
||+.
T Consensus 193 ~~~~ 196 (398)
T TIGR00895 193 PESI 196 (398)
T ss_pred CCCC
Confidence 8764
No 114
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.88 E-value=1.9e-08 Score=103.91 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+.+.+++.||+|||+++..+.++++++.+...+.. + .+..++...+.|
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~r~l~G 119 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN----S----------------FSLLLIGRACLG 119 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC----h----------------HHHHHHHHHHHH
Confidence 34456777788899999999999999999999999988776655432 2 556667778899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+....+..++++|+.|+ +++|..+|+.+....++.++.+.+.+.+.+..|. .+.|.+.++++++..+.....+
T Consensus 120 ~~~g~~~~~~~~~i~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw--~~~f~~~~~l~~~~~l~~~~~~ 195 (394)
T PRK10213 120 LALGGFWAMSASLTMRLVPP--RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW--RNVFNAAAVMGVLCIFWIIKSL 195 (394)
T ss_pred HhhHHHHHHHHHHHHHHcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHC
Confidence 99998888888899999986 4568899999999999999999988888777663 4578888877777666555667
Q ss_pred CCCCC
Q 012601 445 PHLSS 449 (460)
Q Consensus 445 pe~~~ 449 (460)
||+++
T Consensus 196 p~~~~ 200 (394)
T PRK10213 196 PSLPG 200 (394)
T ss_pred CCCCc
Confidence 88653
No 115
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.88 E-value=8.9e-09 Score=104.58 Aligned_cols=282 Identities=15% Similarity=0.052 Sum_probs=180.5
Q ss_pred cccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHH
Q 012601 52 NTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLC 131 (460)
Q Consensus 52 n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~ 131 (460)
....+...++++...|||+||.|++++. +.++|..+.-+++-. ....+. ...||....+-.+.++++
T Consensus 119 GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~--v~~~~g----------~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 119 GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL--VAVAFG----------FLAWRNVAGIYVVALAIA 185 (417)
T ss_pred cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH--HHHHHh----------hHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999998 888877776555422 111110 013777777777777777
Q ss_pred hhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCC
Q 012601 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFND 211 (460)
Q Consensus 132 ~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (460)
.+...+..+|.|......++
T Consensus 186 ~v~~~~~~~d~p~~r~~~~~------------------------------------------------------------ 205 (417)
T COG2223 186 AVLAWLGMNDVPEHRASVKP------------------------------------------------------------ 205 (417)
T ss_pred HHHHHHHhCCChhhhccccc------------------------------------------------------------
Confidence 77778888887632111110
Q ss_pred CchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHH
Q 012601 212 GPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSV 291 (460)
Q Consensus 212 ~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si 291 (460)
.....++.+++. +..|.+++..+..+=++..+..|++.|..+ .|.-++. +.|. -...+..
T Consensus 206 ~~~~~~~~v~~~-----~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~-~fg~~~~---------~Ag~-----~a~~f~~ 265 (417)
T COG2223 206 QLPAQLKAVFSN-----KDTWLLSLLYFATFGGFVGFSAYLPMYLVT-QFGLSPV---------TAGL-----IAFLFPL 265 (417)
T ss_pred cchhHHHHHhcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChh---------hHHH-----HHHHHHH
Confidence 000112222322 456777777777777777777888887764 5776643 1222 1233455
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
...+.-.+.|+++||+|.+|+.......++++........... .+ +++ ....+..+..+++..+.-+
T Consensus 266 ~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~-----~~-----~~~---~~~~~~~~l~l~~~~G~Gn 332 (417)
T COG2223 266 IGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF-----GH-----GGS---FVVFVAVFLALFVFAGLGN 332 (417)
T ss_pred HHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc-----cc-----Ccc---hHHHHHHHHHHHHHhccCc
Confidence 6677777899999999999998888888888776544432110 00 011 2233333333444444444
Q ss_pred CccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 372 ~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
.--|.++..+.|+ ..|...|+....-.++-+..|+.+|...+..|.. ...|++...+.+++.+..+..
T Consensus 333 Gsvfk~Ip~if~~---~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~-~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 333 GSVFKMIPVIFPK---ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY-TGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred chheeechHHHHh---hhhHHHHHHHHhccccccchhHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4457789999975 4688889888888888888888888888888743 456888888888777765543
No 116
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.87 E-value=2.6e-08 Score=101.50 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchh
Q 012601 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRL 311 (460)
Q Consensus 232 ~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~ 311 (460)
..+++..+...+.+..+....+.+.++ ++-++. ..| +....+.+...+.+.+.+++.||+|||+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~s~~-------------~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~ 78 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAEVAGE--FGLTTV-------------DAA-SLISAALISRWFGALMFGLWGDRYGRRL 78 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChh-------------hHH-HHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344555666666665555555554432 333321 122 3445566778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCccc
Q 012601 312 VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGL 391 (460)
Q Consensus 312 l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~ 391 (460)
++.++.++.+++.+...+.. + .+..++...+.|++.+.......+++.|..|++ ++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~~~~ 136 (405)
T TIGR00891 79 PMVTSIVLFSAGTLACGFAP----G----------------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKH--LRNK 136 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh--hhhH
Confidence 99999888887776655443 2 455666777899999988888889999999874 5688
Q ss_pred chhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 392 AIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 392 ~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
.+|+.++...+++++.+.+.+.+.+..+......|.++++..++.. +....+||++
T Consensus 137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~ 192 (405)
T TIGR00891 137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence 9999999999999999988777766554223346776665555443 3446678764
No 117
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.86 E-value=2.6e-08 Score=102.20 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+...+.+++.||+|||+.+.++.++++++.+...+.. + ....++...+.|
T Consensus 43 ~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~~~l~g 102 (392)
T PRK10473 43 AFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE----T----------------SSLFLAGRFLQG 102 (392)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC----c----------------HHHHHHHHHHHH
Confidence 44556667777889999999999999999999888888776555432 1 334455556788
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+......++++.|..|+ +++++.+|+.+....++.++.+.+.+.+.+..| ....|.+.++++++.+++..+.+
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDD--RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP--WQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--hHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888777888999999886 456888899999988888888887766655554 23468888888888777777778
Q ss_pred CCCCCC
Q 012601 445 PHLSSN 450 (460)
Q Consensus 445 pe~~~~ 450 (460)
||++.+
T Consensus 179 ~~~~~~ 184 (392)
T PRK10473 179 KETRPA 184 (392)
T ss_pred CCCCCc
Confidence 887654
No 118
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.85 E-value=3.1e-08 Score=102.86 Aligned_cols=140 Identities=15% Similarity=-0.001 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+++.+++.||+|||+++.++.++++++.+.+.+.. + ....++.-.+.|
T Consensus 48 ~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~r~l~G 107 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT----G----------------PESLYLLRILVG 107 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHHH
Confidence 44556777788899999999999999999999999988887766553 2 455666777899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec------ccCccchhHhHHHHHHHHHHH
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL------FGGGNIPAFVLASLSALAGGV 438 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~------~g~~~~~~f~~~~v~~lia~~ 438 (460)
++.+.......++++|..|+ +++|+.+|+++....+++++.+.+.+.+.+. .| .+++|.+.++.+++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g--wr~~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 108 IAEAGFLPGILLYLTFWFPA--YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG--WQWLFLLEGFPSVILGV 183 (412)
T ss_pred HHHhhHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc--hhHHHHHHHHHHHHHHH
Confidence 99998777767788999986 3568899999999999999999887776532 23 34678888888887777
Q ss_pred HhhhccCCCC
Q 012601 439 VATLKLPHLS 448 (460)
Q Consensus 439 ~~~~~vpe~~ 448 (460)
+.++++||+.
T Consensus 184 ~~~~~~~~~p 193 (412)
T TIGR02332 184 MTWFWLDDSP 193 (412)
T ss_pred HHhhccCCCc
Confidence 6777788875
No 119
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.84 E-value=3.2e-08 Score=102.01 Aligned_cols=142 Identities=13% Similarity=0.039 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+....+.+...+.+.+.+++.||+|||+++.++..+.+++.+...+.. + .+..++...+.
T Consensus 52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~ 111 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ----S----------------IEQFTLLRFLQ 111 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHH
Confidence 345567778888899999999999999999999888887766555443 2 44555666778
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.+....+.++.+.|..|++ .++..+|+.+....++..+.+.+.+.+.+..+. .+.|.+.+++.+++.+...+.
T Consensus 112 G~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w--~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 112 GIGLCFIGAVGYAAIQESFEEA--DAIKITALMANVALLAPLLGPLVGAALIHVLPW--RGMFVLFAALAALSFFGLWRA 187 (406)
T ss_pred HhHhhhHHHHHHHHHHHHhChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--cHHHHHHHHHHHHHHHHHHHh
Confidence 8888877777888999998864 446677888888888888888877777665553 357888888888877766677
Q ss_pred cCCCCC
Q 012601 444 LPHLSS 449 (460)
Q Consensus 444 vpe~~~ 449 (460)
+||++.
T Consensus 188 ~~~~~~ 193 (406)
T PRK15402 188 MPETAG 193 (406)
T ss_pred CCCCCc
Confidence 898764
No 120
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.83 E-value=3.6e-08 Score=103.01 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+++.+++.||+|||+++.++.++.+++.+...+.. + .+...+...+.|
T Consensus 63 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~g 122 (434)
T PRK11663 63 LATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS----S----------------LWAFALLWVLNA 122 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh----H----------------HHHHHHHHHHHH
Confidence 44567778888899999999999999999999999888777665543 1 344444555667
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......+++++..|+ +++|+.+|+.+....++.++.+.+.+.+.+..| ..+.|.+.++++++.++...+.+
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~i~~~~~~~~~~~~~ 198 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSR--TERGGWWAIWNTAHNVGGALIPLVVGAIALHYG--WRYGMMIAGIIAIVVGLFLCWRL 198 (434)
T ss_pred HHHHccchHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHHHHc
Confidence 77776656667788999886 456999999999999999999998888877665 34578887877766655555556
Q ss_pred CCC
Q 012601 445 PHL 447 (460)
Q Consensus 445 pe~ 447 (460)
||.
T Consensus 199 ~~~ 201 (434)
T PRK11663 199 RDK 201 (434)
T ss_pred CCC
Confidence 553
No 121
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.83 E-value=1.7e-07 Score=99.82 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhH-------HHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHH
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLV-------WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l-------~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (460)
++.+..++.+-+.+++.||+++|+. ..+|.++.+++++.++.......+ .+..+ +.+..+...
T Consensus 317 ~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-~~~~~---------s~~~~i~~~ 386 (489)
T PRK10207 317 LNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFAD-AQGLT---------SPWFIVLVY 386 (489)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCcc---------CHHHHHHHH
Confidence 4555666777778999999999874 778888888777654322110000 00000 134455667
Q ss_pred HHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccc
Q 012601 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAG 412 (460)
Q Consensus 361 ~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g 412 (460)
.+.|++......+-++++.+..|+ +.+|..+|+.+....+++.+...+..
T Consensus 387 ~l~g~Ge~~~~~~g~~~~~~~aP~--~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 387 LFQSLGELFISALGLAMIAALVPQ--HLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHHHHHhHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999888889999999987 46799999999999999999876653
No 122
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.83 E-value=1.2e-07 Score=100.63 Aligned_cols=143 Identities=15% Similarity=0.038 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhHHH----Hhhh-cCchhHH--HHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEP----MCRW-IGSRLVW--AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~----l~~r-iG~r~l~--~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (460)
...++++..++...+..+ +.|| .+.+... .+|.++.+++++.+.+......+ ... .+.+..+
T Consensus 317 ~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~----~~~-------~s~~~~i 385 (475)
T TIGR00924 317 FQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA----GGL-------TSPWFMV 385 (475)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCc-------cCHHHHH
Confidence 344566666655544444 3343 2333444 68888888888766654211100 000 1255667
Q ss_pred HHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHH
Q 012601 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (460)
Q Consensus 358 ~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~ 437 (460)
..+.+.|++-......-++++++..|+ +.+|+++|+.++...+++.+++.+.....+..+. ...|..-+++.++.+
T Consensus 386 ~~~~~~~~ge~~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 461 (475)
T TIGR00924 386 LIYLFQTLGELMISPLGLSWWTKIAPQ--RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGV--TGVFGKIGLVTLLVG 461 (475)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHH
Confidence 777889999999999999999999997 4679999999999999999998876654443331 234555555555444
Q ss_pred HHhhh
Q 012601 438 VVATL 442 (460)
Q Consensus 438 ~~~~~ 442 (460)
+...+
T Consensus 462 ~~~~~ 466 (475)
T TIGR00924 462 VVMAL 466 (475)
T ss_pred HHHHH
Confidence 44333
No 123
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.83 E-value=3.7e-08 Score=104.80 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
|....|.+...+...+.+++.||+|||+++.++.++++++.+..++.. + .+..++.-.+.
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~----~----------------~~~li~~r~l~ 104 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP----T----------------ASWLIATRALL 104 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC----C----------------HHHHHHHHHHH
Confidence 556667777788888999999999999999999999988777665543 2 45566667789
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.+.......+++.+.++++ +++|+.+|+......++..+.|.+.|.+.+..| ..+.|.+...+.+++.++..+.
T Consensus 105 G~g~~~~~~~~~~~l~~~~~~~-~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 105 AIGAAMIVPATLAGIRATFTEE-KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999887776666776665432 457889999999999999999999888888766 3468888888888887777778
Q ss_pred cCCCCCC
Q 012601 444 LPHLSSN 450 (460)
Q Consensus 444 vpe~~~~ 450 (460)
+||.+.+
T Consensus 182 l~~~~~~ 188 (495)
T PRK14995 182 VPRQAGR 188 (495)
T ss_pred CCCCCCC
Confidence 8876543
No 124
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.81 E-value=1.9e-08 Score=101.25 Aligned_cols=142 Identities=18% Similarity=0.071 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+....+.+...+.+++.+++.||+|||+++.++.++.+++.....+.. + .+..++...+.
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~ 92 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG----A----------------YVSLYILRVLL 92 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----C----------------HHHHHHHHHHH
Confidence 355667788888999999999999999999999888887776655543 2 55667777889
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.+.......++++|..|+ +++|+.+|+.+....+++++.+.+.+.+.+..+. .+.|.+.+++.++.++...+.
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 93 GAAEAPFFPGIILIVASWFPA--SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSW--QWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred HHHHHhhhhHHHHHHHHhCCH--HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHHhhhe
Confidence 999998888888999999986 3568899999999999999999988877766653 357888888888777766666
Q ss_pred cCCCCC
Q 012601 444 LPHLSS 449 (460)
Q Consensus 444 vpe~~~ 449 (460)
+||++.
T Consensus 169 ~~~~~~ 174 (399)
T TIGR00893 169 IPDPPQ 174 (399)
T ss_pred ecCCCC
Confidence 666543
No 125
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.80 E-value=2.2e-08 Score=100.72 Aligned_cols=140 Identities=13% Similarity=0.091 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+++.+++.||+|||+++.++.++.+++.++..+.. + .+..++...+.|
T Consensus 35 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g 94 (379)
T TIGR00881 35 LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST----S----------------LWVMAALWALNG 94 (379)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHH
Confidence 44567778888899999999999999999999988888777666554 2 456667777889
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHh-hccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVS-LGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~-~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
++.+.......++++|..|++ ++|+.+|+.+....+++++.+ ...+.+.+..+. ...|.+.+++.++.+++.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 95 IFQGMGWPPCGRTVTKWFSRS--ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW--HWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred hhccccCCchHHHHHHhcCHh--hheeeEeehhccchhHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHhee
Confidence 999988888889999999874 568888999999999999998 344444444442 346888887777777766666
Q ss_pred cCCCC
Q 012601 444 LPHLS 448 (460)
Q Consensus 444 vpe~~ 448 (460)
+||.+
T Consensus 171 ~~~~~ 175 (379)
T TIGR00881 171 LRDSP 175 (379)
T ss_pred eCCCc
Confidence 76643
No 126
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.79 E-value=6.4e-08 Score=99.54 Aligned_cols=140 Identities=16% Similarity=0.032 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+...+.+++.||+|||+++.++.++.+++.+...+.. + .+..++...+.|
T Consensus 55 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~G 114 (406)
T PRK11551 55 AFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW----D----------------FPSLLVARLLTG 114 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHH
Confidence 45567777888899999999999999999999888877665544433 2 455666777889
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......+++.|..|+ +.+|+.+|+.+....++..+.+...+.+.+..+. ...|.+.+++.++..++..+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l 190 (406)
T PRK11551 115 VGLGGALPNLIALTSEAVGP--RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW--RHIFYVGGVGPLLLVPLLMRWL 190 (406)
T ss_pred hhHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH--HHHHHHHHHHHHHHHHHHHHhC
Confidence 99988888888899999986 3568899999999999999998876666555442 3467777777776666666667
Q ss_pred CCCC
Q 012601 445 PHLS 448 (460)
Q Consensus 445 pe~~ 448 (460)
||+.
T Consensus 191 ~~~~ 194 (406)
T PRK11551 191 PESR 194 (406)
T ss_pred CCCh
Confidence 8764
No 127
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.77 E-value=1.9e-07 Score=96.37 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=168.7
Q ss_pred HhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHH
Q 012601 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (460)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i 126 (460)
+.+..|+.-....||+.... .+.+-=+|-..++.++|-.++-.+++.. . +. +-...|.++.+
T Consensus 114 l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L-~-~i--------------~p~~~fwi~s~ 175 (412)
T PF01306_consen 114 LGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGIL-F-NI--------------NPNIIFWIASA 175 (412)
T ss_dssp TTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHH-H-HH--------------HHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhhee-e-ee--------------CccHHHHHHHH
Confidence 34455555566777776664 4456668888889999999988887752 1 11 12345666555
Q ss_pred HHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccC
Q 012601 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (460)
Q Consensus 127 ~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
..++..++.++.-||++......+.. .+
T Consensus 176 ~~~il~lll~~~~~~~~~~~~~~~~~-------------------------------------------------~~--- 203 (412)
T PF01306_consen 176 AAIILLLLLLLLKPDVPPQAEVADAL-------------------------------------------------GA--- 203 (412)
T ss_dssp HHHHHHHHHHSS---SSSSS-SSTTS-------------------------------------------------SS---
T ss_pred HHHHHHHHHHHcCCcCchhhhhhccc-------------------------------------------------cc---
Confidence 54444444344444443221111000 00
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHH-HHHH
Q 012601 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVRE-GAFG 285 (460)
Q Consensus 207 ~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~-G~~~ 285 (460)
+.++.+++++.+.+ ++ |.+|.+.+.....+..+..+-..++.|... .|+. -++|.++ |- .
T Consensus 204 ----~~~~~~~~~~~~l~-k~-~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~-~f~~-----------~~~g~~~~G~-l 264 (412)
T PF01306_consen 204 ----KKDKVSLKDVLSLF-KM-RNFWFFVLFVIGVAAIYDVFDQQFPIYFAS-FFQS-----------AGQGNQMYGY-L 264 (412)
T ss_dssp ----------HHHHHHHT-TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSS-----------HHHHHHHHHH-H
T ss_pred ----CCCCCcHHHHHHHh-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-----------cccChhHHhH-H
Confidence 01123455555432 23 345554444444444444443223333321 2221 1233332 21 1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
..+.-+.-++.=++.|++.+|+|.|+.++++..++++=..+.++.. + .+.+...=.+-|+
T Consensus 265 ~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~----~----------------~~~i~~~klLH~~ 324 (412)
T PF01306_consen 265 WSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT----N----------------PWVISLIKLLHAL 324 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------S----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc----c----------------hHHHHHHHHHHHH
Confidence 2234445566677889999999999999999888877666666654 2 5667777778888
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhh-hHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi-~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
-.+....-.+-.+++..|+ |-.++...+ .+++..+++++.+...|.+.|..|.. .+|++-|.+.++..+...+.+
T Consensus 325 e~~l~lva~fkYI~~~fd~--rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~--~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 325 EFPLLLVAAFKYITAHFDK--RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ--HTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHS-G--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH--HHHHHHHHHHHHHHHHheeee
Confidence 8887777777788888876 444555555 57899999999999999999998843 356666666777777777778
Q ss_pred CCCCCCC
Q 012601 445 PHLSSNS 451 (460)
Q Consensus 445 pe~~~~~ 451 (460)
++.|...
T Consensus 401 ~~~~~~~ 407 (412)
T PF01306_consen 401 KKDKKQI 407 (412)
T ss_dssp --SSSTT
T ss_pred cCCCccc
Confidence 7766644
No 128
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.76 E-value=1.4e-07 Score=100.13 Aligned_cols=177 Identities=12% Similarity=0.117 Sum_probs=122.4
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 012601 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (460)
Q Consensus 227 mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~r 306 (460)
.|+.++.++.+.++..++++.+..+.+.|+.+. ++-++ + ..+ ..+..+.+...+..++.+++.||
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-lgls~----------~---~a~-~i~~~~~~~~~l~~ligG~LaDR 71 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-LKYDD----------N---HAY-ELFSAYCSLVYVTPILGGFLADK 71 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------H---HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889899888888888888888887642 22221 1 112 23556667777889999999999
Q ss_pred c-CchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCC
Q 012601 307 I-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (460)
Q Consensus 307 i-G~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~ 385 (460)
+ ||||++.+|.++++++.+...+... + .....+..++.+++.+.......++++|.+|++
T Consensus 72 ilGrrr~iliG~il~~lg~lll~~~~~---~----------------~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~ 132 (493)
T PRK15462 72 VLGNRMAVMLGALLMAIGHVVLGASEI---H----------------PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT 132 (493)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhc---c----------------hhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence 9 9999999999888877654432210 0 111222333444555655566678999999875
Q ss_pred CCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHH
Q 012601 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (460)
Q Consensus 386 ~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~ 439 (460)
+++++...++.+....++-.++|.+.|.+.+..|. ...|..+++..+++.+.
T Consensus 133 ~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw--~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 133 DPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW--AMGFGLAAVGMIAGLVI 184 (493)
T ss_pred CccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHH
Confidence 43456677999999889999999998888776663 34788877655554443
No 129
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.76 E-value=1.3e-07 Score=97.08 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
....+++..|+..+++..+..+.+.|..+ ++.++. +..+ .-.| +.+.++.+...+.+.+.+++.||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~------~~~~--~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~ 83 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ--LGVTGH------SALN--MWSG-LVFSITFLFSAIASPFWGGLADRKGR 83 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hCCccc------hhHH--HHHH-HHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence 44566778888877877777777777654 332211 0000 0112 34556777788889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCc
Q 012601 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (460)
Q Consensus 310 r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~ 389 (460)
|+++..+.+..+++++...+.. + .+..++...+.|++.+ ......+++.+..|++ ++
T Consensus 84 r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~~ 140 (408)
T PRK09874 84 KIMLLRSALGMGIVMVLMGLAQ----N----------------IWQFLILRALLGLLGG-FVPNANALIATQVPRN--KS 140 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----h----------------HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh--hh
Confidence 9999999888887776554432 1 3445555556676644 3334445677777763 45
Q ss_pred ccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 390 G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
|+.+|+.+....++.++.+.+.+.+.+..+. ...|.+.+++.+++.+...+.+||.
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGL--RPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8889999999999999999988887776653 3578888888887777766667664
No 130
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.76 E-value=1.1e-07 Score=98.12 Aligned_cols=183 Identities=14% Similarity=0.054 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 012601 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (460)
Q Consensus 227 mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~r 306 (460)
.|+.+....+..++..++......|.+.+..+ ++.++. ..| +.+..+.+...+.+.+.+++.||
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~g~s~~-------------~~g-~~~~~~~~~~~i~~~~~g~l~dr 74 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA--LGLSPQ-------------QSA-SAFTLYGIAAAISAWISGVVAEI 74 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHH--hCCCHH-------------HhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788777777755555566666643 333321 223 34567888889999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCC
Q 012601 307 IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (460)
Q Consensus 307 iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~ 386 (460)
+|||+++..+.+++++++++........ + +.+..++...+.|++.+.......+.+.+..|+
T Consensus 75 ~g~k~~l~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-- 136 (402)
T TIGR00897 75 IGPLKTMMIGLLLWCVGHAAFIVFGLGH-A---------------NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-- 136 (402)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccC-c---------------cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH--
Confidence 9999999999988888765432211100 1 144455566677888876555545566677665
Q ss_pred CCcccchhhhHHHHHHHH-HHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 387 GGQGLAIGVLNLAIVIPQ-MIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 387 ~~~G~~~Gi~n~~~~l~q-il~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
+++|+.+|+.+....+++ ++.+...+.+.+..|... .++....+.+++.+...+++|
T Consensus 137 ~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 137 DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMN--TLWSALAFVLTGGVIALFSNK 194 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH--HHHHHHHHHHHHHHHHHhccC
Confidence 456999999999999998 466777677776665321 334333333444443334443
No 131
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.75 E-value=8.9e-08 Score=96.86 Aligned_cols=176 Identities=20% Similarity=0.103 Sum_probs=110.9
Q ss_pred HHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHH
Q 012601 236 IVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAI 315 (460)
Q Consensus 236 l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~ 315 (460)
+..|+..++.....-+.+.|+.++ ++.++. ..| +.+..+.+...+.+.+.+++.||+||||.+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~-~g~s~~-------------~~g-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~ 68 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEE-VRARPA-------------MIG-LFYTGSAIVGIAVSQLLATRSDYQGDRKGLIL 68 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcc-cCCCHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Confidence 445666666555555566665432 343311 222 24456677788888899999999999987664
Q ss_pred -HHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchh
Q 012601 316 -SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIG 394 (460)
Q Consensus 316 -g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~G 394 (460)
+....+++.+...+.. + .+..++...+.|...+.....-.+++.|..|+++|..+...|
T Consensus 69 ~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 128 (375)
T TIGR00899 69 FCCLLAALACLLFAWNR----N----------------YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSS 128 (375)
T ss_pred HHHHHHHHHHHHHHhcc----h----------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHH
Confidence 4444444433333322 1 333333334455555555555556777877654343344468
Q ss_pred hhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 395 VLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 395 i~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
+.+....+++.+.+...+.+.+..| ..+.|.+.+++.++.+++.++++||.+
T Consensus 129 ~~~~~~~~g~~ig~~~~~~l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 129 VMRAQISLAWVIGPPLAFWLALGFG--FTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 8888888999999988777776655 345799988888888877777788754
No 132
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.75 E-value=1.4e-07 Score=96.88 Aligned_cols=186 Identities=11% Similarity=-0.059 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
+.+..+++..++..++.....-+.+.++.+ .++.++. ..| +.+..+.+...+.+.+.|++.||+|
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~-~~g~s~~-------------~~g-~~~~~~~~~~~i~~~~~G~l~Dr~g 79 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHD-QLGFSAF-------------LAG-LVISLQYLATLLSRPHAGRYADTLG 79 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccHH-------------HHH-HHHHHHHHHHHHhchhhHhHHhccC
Confidence 345667888888888866666666766654 2333311 122 3556677888899999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCC
Q 012601 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~ 388 (460)
||+++.++.++.+++.+...+..... + . +.......++...+.|++.+.......+++.+..|++ +
T Consensus 80 ~r~~l~~~~~~~~~~~~~~~~~~~~~-~-----~------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~--~ 145 (399)
T PRK05122 80 PKKAVVFGLCGCALSGLLYLLAGLLA-A-----W------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL--H 145 (399)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhhh-c-----c------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh--h
Confidence 99999999888776654443332110 0 0 0012345566667899999988887777888888764 5
Q ss_pred cccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 389 ~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
+|+.+|+.+....++.++.+.+.+.+.+..|- ...+.+.++++++..++. +..|+
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~--~~~~~~~~~~~~~~~~~~-~~~~~ 200 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGL--AGLGLLIMLLALLGLLLA-RPRPA 200 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHH-hcCCC
Confidence 68888999999999999988887777776653 335666666555544433 33454
No 133
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.75 E-value=7.9e-08 Score=95.30 Aligned_cols=168 Identities=17% Similarity=0.093 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhH
Q 012601 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 312 (460)
Q Consensus 233 ~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l 312 (460)
.++...+...+++.....+.+.+..+ ++.+++ ..+ +....+.+...+.+.+.+++.||+|||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~g~~~d~~g~r~~ 66 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAED--LGLSAS-------------QAG-LIVSAFSLGYALGSLLAGYLSDRFGRRRV 66 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHH--cCCCHH-------------HHH-HHHHHHHHHHHHHHHhHHHHHHHhCCchh
Confidence 34566777777776666666666654 222210 122 34556777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccc
Q 012601 313 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLA 392 (460)
Q Consensus 313 ~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~ 392 (460)
+.++..+.+++.+...+.. + .+..++...+.|++.+.....-.+++.|..|+ +++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~ 124 (352)
T cd06174 67 LLLGLLLFALGSLLLAFAS----S----------------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPP--KERGRA 124 (352)
T ss_pred hHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHcccccccHhHHHHHHHhCCc--cchhhh
Confidence 9999999888877665543 2 45667777889999998888888999999987 456888
Q ss_pred hhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 393 IGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 393 ~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
+|+.+....+++++.+...+.+.+..+. ...|.+.+++.+++.+..
T Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 125 LGLFSAGFGLGALLGPLLGGLLAESLGW--RWLFLILAILGLLLALLL 170 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888766542 346777777777766654
No 134
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.74 E-value=5e-08 Score=100.00 Aligned_cols=138 Identities=14% Similarity=-0.023 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
...+.+...+..++.+++.||+|||++...+.+....+........ +....++.-.+.|+
T Consensus 32 ~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~R~l~G~ 91 (368)
T TIGR00903 32 AITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--------------------NYEWLLACQLLAAL 91 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHh
Confidence 4456667788899999999999999887655444433322111101 14556667777888
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
+.+. .....+.++|+.|+ +++|+.+|+.+....++.++++...+.+.+..| .+..|.+.++.+++.++++++.+|
T Consensus 92 g~~~-~~~~~~~~~~~~~~--~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g--Wr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 92 GQPF-LLNAFAPAASQIRE--ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG--LQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HhHH-HHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8885 45666777999986 467999999999999999999988777776655 345788878888888887778899
Q ss_pred CCC
Q 012601 446 HLS 448 (460)
Q Consensus 446 e~~ 448 (460)
|.+
T Consensus 167 ~~p 169 (368)
T TIGR00903 167 ALP 169 (368)
T ss_pred CCC
Confidence 864
No 135
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.6e-07 Score=100.23 Aligned_cols=177 Identities=19% Similarity=0.165 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
+.+..+++...+..+|++...+|.++|..+..+.. ......+.+.+++..+.-++.|.+.|+..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~----------------~~aa~l~Siigi~~i~gRi~~G~laD~~~ 361 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSS----------------NDAAFLLSIIGVSDIIGRIILGLLADKPG 361 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh----------------hhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence 45566788888899999999999999887433221 11123455677788888999999999988
Q ss_pred chhHHH--HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCC
Q 012601 309 SRLVWA--ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (460)
Q Consensus 309 ~r~l~~--~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~ 386 (460)
.++.++ +++++.+++.+...+.. +.+..++.+.++|++.|.+..++.-++.++...
T Consensus 362 ~~~~~~~~~~ll~~gl~~~~~p~~~--------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-- 419 (509)
T KOG2504|consen 362 IRALVLFLLTLLIAGLARLFLPFAT--------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-- 419 (509)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh--
Confidence 655555 44444444332222222 256788888999999999999888888999876
Q ss_pred CCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 387 GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 387 ~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
++.....|++.++..++.++++.+.|.+.+..|++. ..|.+.|++.++++++. +++|
T Consensus 420 ~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~-~~f~~~g~~~~~s~~~~-~~~~ 476 (509)
T KOG2504|consen 420 EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD-HAFYFCGLCFLLSAVLL-LILR 476 (509)
T ss_pred hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee-eehhhcChHHHHHHHHH-HHhH
Confidence 456778899999999999999999998889998654 47999998888888753 4555
No 136
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.73 E-value=1.3e-07 Score=97.03 Aligned_cols=142 Identities=14% Similarity=0.187 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+..+.+...+...+.++++||+|||+++.++.++.+++.+...+.. + .+..++...+.|
T Consensus 48 ~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~~g 107 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH----S----------------LTVLIAASAIQG 107 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHHH
Confidence 45567777888899999999999999999999888877666544432 2 445566667788
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......+++.|..+. ++.+..++..+....+++.+.+.+.+.+.+..| ...+|.+.+++.++.++...+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~ 183 (394)
T PRK11652 108 LGTGVGGVMARTLPRDLYEG--TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLGAGVTFSMARWM 183 (394)
T ss_pred hhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHhC
Confidence 88887766667777887765 356788899999999999999988777766555 23578887777776666556678
Q ss_pred CCCCCC
Q 012601 445 PHLSSN 450 (460)
Q Consensus 445 pe~~~~ 450 (460)
||++.+
T Consensus 184 ~~~~~~ 189 (394)
T PRK11652 184 PETRPA 189 (394)
T ss_pred CccCcc
Confidence 886543
No 137
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.72 E-value=4e-08 Score=101.75 Aligned_cols=184 Identities=14% Similarity=0.060 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
+.++.+++.+++..++......+.+.+..+ ++.++ . ..| +....+.+..++.+.+.+++.||+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~---------~----~~g-~~~~~~~l~~~~~~~~~G~l~dr~g 80 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQIQM--MTGST---------L----QVG-LSVTLTGGAMFIGLMVGGVLADRYD 80 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCH---------H----HHH-HHHHHHHHHHHHHHHhhHHHhhhcC
Confidence 356677788888888876666667766543 22221 1 222 3455677778888999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCC
Q 012601 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~ 388 (460)
||+++.++.++.+++++..........+ +.+..++...+.|++.+.....-.+++.+..|+ ++
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~ 143 (417)
T PRK10489 81 RKKLILLARGTCGLGFIGLALNAFLPEP---------------SLLAIYLLGLWDGFFGSLGVTALLAATPALVGR--EN 143 (417)
T ss_pred CceEEEehHHHHHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH--HH
Confidence 9999998888777766544432110001 134455556667777776655556788888876 35
Q ss_pred cccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 389 ~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
+++..|+.+....+++++.+.+.|.+.+..|. .+.|.+.++..+++.+.. +.+||++
T Consensus 144 ~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~~ 200 (417)
T PRK10489 144 LMQAGAITMLTVRLGSVISPALGGLLIAAGGV--AWNYGLAAAGTFITLLPL-LRLPALP 200 (417)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHH-HhCCCCC
Confidence 68888999999999999999988888776553 356777777777666543 5566653
No 138
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.72 E-value=3.6e-07 Score=94.77 Aligned_cols=185 Identities=16% Similarity=0.097 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
++....+..++...+...+..|.+.|+.+.. +.+ .. ..|. .+.+..+.-+..=+..+++.+|+|.
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g--g~~-----------~~-~~g~-~~~l~~~aEi~~f~~~~~~~~r~g~ 272 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELG--GYS-----------GS-TIGI-LWALGVVAEIPFFFFSGRFLKRFGI 272 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cch-----------hh-HHHH-HHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3445566677777777777778887776522 110 00 1121 2223334445556788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHH-HHHHHHhhhhhhhhcCccchhhhccccCCCCC
Q 012601 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVAS-LVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (460)
Q Consensus 310 r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~ 388 (460)
|+++.++.+..++=..+++... + |.+..+.. .+-..+.|+.++.+.......+.+..|++ .
T Consensus 273 ~~ll~~a~~~~~vR~~l~a~~~----~------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~--~ 334 (400)
T PF03825_consen 273 KWLLLLALVAYAVRWLLYAYFS----D------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE--L 334 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----C------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc--c
Confidence 9999999877776555555442 1 10111111 11234689999988888888899999874 4
Q ss_pred cccchhhhHHH-HHHHHHHHhhccccceecccCcc----chhHhHHHHHHHHHHHHhhhccCCC
Q 012601 389 QGLAIGVLNLA-IVIPQMIVSLGAGPWDALFGGGN----IPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 389 ~G~~~Gi~n~~-~~l~qil~~~~~g~l~~~~g~~~----~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
+++..|+++.. ..++..+.++++|.+.+..|... ...+.+.++++++..+....+.+|+
T Consensus 335 ~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 335 RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 57777998875 56999999999999998877542 1234555555555554444444443
No 139
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.7e-08 Score=99.30 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHH
Q 012601 278 GVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (460)
Q Consensus 278 gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (460)
.+++|. -++.++++.++.+-+.|.++||+|+|..+++|.+++..+-++.++-. +..+.+
T Consensus 105 ~~~iG~-LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--------------------sy~~l~ 163 (464)
T KOG3764|consen 105 NTQIGL-LFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--------------------SYPMLF 163 (464)
T ss_pred ccchhH-HHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--------------------hhHHHH
Confidence 334553 56678999999999999999999999999999999887766655543 256778
Q ss_pred HHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHH
Q 012601 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (460)
Q Consensus 358 ~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~ 437 (460)
+.-++.|++.|...+.-.+++++.+|++ .++|..||+.-.++.++-+++|...|.+.+..|- ...|.+-+++.++..
T Consensus 164 vAR~LQgvgsA~~~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~~Gk--~aPFlVL~~v~Lld~ 240 (464)
T KOG3764|consen 164 VARSLQGVGSAFADTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEFAGK--SAPFLVLAIVLLLDG 240 (464)
T ss_pred HHHHHhhhhHHHHHhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhhcCC--cCcHHHHHHHHHHHH
Confidence 8888999999999999999999999985 4579999999999999999999988888888874 358999999999988
Q ss_pred HHhhhccCCC
Q 012601 438 VVATLKLPHL 447 (460)
Q Consensus 438 ~~~~~~vpe~ 447 (460)
.+..++++.+
T Consensus 241 ~L~l~vi~p~ 250 (464)
T KOG3764|consen 241 ALQLLVIEPT 250 (464)
T ss_pred HHHHheeCcc
Confidence 8777776543
No 140
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.70 E-value=1.4e-07 Score=104.71 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
...++.+..++.+++.++++||+|||++++++.++++++.+++++.. + .+..++...+.|
T Consensus 207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~----s----------------~~~llv~R~l~G 266 (742)
T TIGR01299 207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ----G----------------YGFFLFCRLLSG 266 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----h----------------HHHHHHHHHHHH
Confidence 34456677888899999999999999999999888887766665543 1 455666778899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc-----------CccchhHhHHHHHH
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-----------GGNIPAFVLASLSA 433 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g-----------~~~~~~f~~~~v~~ 433 (460)
++.+....+.+++++|..|. +.+|..+++++.+..++.++++.+...++...| ....+.|.+.++.+
T Consensus 267 ~g~g~~~p~~~~~isE~~p~--~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ 344 (742)
T TIGR01299 267 FGIGGAIPIVFSYFAEFLAQ--EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC 344 (742)
T ss_pred HHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHH
Confidence 99999999999999999997 456899999999999999888865544432211 01234566666665
Q ss_pred HHHHHHhhhccCCC
Q 012601 434 LAGGVVATLKLPHL 447 (460)
Q Consensus 434 lia~~~~~~~vpe~ 447 (460)
+++. +..+++||+
T Consensus 345 ll~l-l~~~~lPES 357 (742)
T TIGR01299 345 VFAI-GALTFMPES 357 (742)
T ss_pred HHHH-HHHHHcCCC
Confidence 5554 455778998
No 141
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.70 E-value=1.7e-07 Score=94.52 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCch
Q 012601 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR 310 (460)
Q Consensus 231 l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r 310 (460)
++..|+..+.....|..+..+.+.++.+ .++-++. ..| +....+.+...+.+++.+++.||+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-------------~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r 67 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKD-DLGLSTA-------------QLG-NLVAVPVLAGAVLRIILGFLVDKFGPR 67 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHH-HhCCCHH-------------Hhh-HhhHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3456666666666666666666655544 3444421 122 345567778888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcc
Q 012601 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQG 390 (460)
Q Consensus 311 ~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G 390 (460)
+++.++.++++++.+...+... + .+..++...+.|++.+.. ....+++++..|++ ++|
T Consensus 68 ~~~~~~~~~~~i~~~~~~~~~~---~----------------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~--~r~ 125 (366)
T TIGR00886 68 YTTTLSLLLLAIPCLWAGLAVQ---S----------------YSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK--IQG 125 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---h----------------HHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh--hhh
Confidence 9999999998888766655430 1 344455566677775543 44567889998863 458
Q ss_pred cchhhhHHHHHHHHHHHhhccccce
Q 012601 391 LAIGVLNLAIVIPQMIVSLGAGPWD 415 (460)
Q Consensus 391 ~~~Gi~n~~~~l~qil~~~~~g~l~ 415 (460)
+.+++.+....++..+.+.+.+.+.
T Consensus 126 ~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 126 TALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8889988777777777666655544
No 142
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.69 E-value=2.2e-07 Score=95.18 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 012601 228 PPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWI 307 (460)
Q Consensus 228 P~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~ri 307 (460)
+|+++.++..+++.+++......+.+.|..+ ++.++ . ..| +.+..+.+...+...+.+++.||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~~s~-----------~--~~G-~~~s~~~l~~~~~~~~~g~l~dr~ 68 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ--EHLPT-----------W--QVG-VVSSSYFTGNLVGTLLAGYVIKRI 68 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--cCCCH-----------H--HHH-HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4677788889999888888787788887764 34321 0 223 355667778888899999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCC
Q 012601 308 GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGG 387 (460)
Q Consensus 308 G~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~ 387 (460)
|||+.+.++.++.+++.+...+.. + .+..++...+.|++.+....+-.+.+.+..++ +
T Consensus 69 g~k~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~ 126 (381)
T PRK03633 69 GFNRSYYLASLIFAAGCAGLGLMV----G----------------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTS--R 126 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--H
Confidence 999999999999888776655443 2 45566667788998887655444556666665 3
Q ss_pred CcccchhhhHHHHHHHHHHHhhccccceec
Q 012601 388 GQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 417 (460)
Q Consensus 388 ~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~ 417 (460)
++|+.+|+.+....+++.+.+.+.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 127 NRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 568999999999999999999988877654
No 143
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.66 E-value=3.1e-07 Score=95.06 Aligned_cols=139 Identities=13% Similarity=0.061 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+.+.+++.||+|||+++.++.++.+++.+...+.. + .+..++.-.+.|
T Consensus 58 ~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~r~l~G 117 (426)
T PRK12307 58 LATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS----G----------------VIMLTLSRFIVG 117 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh----H----------------HHHHHHHHHHHH
Confidence 44456677788899999999999999999999999988887666554 2 455666777899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......++++|..|++ .+|+.+|+.+....++.++.+.+.+.+.+..+- .+.|.++.+..++ .++.....
T Consensus 118 ~g~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w--~~~f~i~~~~~~~-~~~~~~~~ 192 (426)
T PRK12307 118 MGMAGEYACASTYAVESWPKH--LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW--RAAFFVGLLPVLL-VIYIRARA 192 (426)
T ss_pred HHHhhHHHHHHHHHHHhCCHh--HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH--HHHHHHHHHHHHH-HHHHHHHC
Confidence 999988888889999999874 468889999999999999998877777665552 3466665443333 33333446
Q ss_pred CCCC
Q 012601 445 PHLS 448 (460)
Q Consensus 445 pe~~ 448 (460)
||++
T Consensus 193 p~~~ 196 (426)
T PRK12307 193 PESK 196 (426)
T ss_pred CCCh
Confidence 7653
No 144
>PRK12382 putative transporter; Provisional
Probab=98.65 E-value=4.2e-07 Score=93.22 Aligned_cols=187 Identities=7% Similarity=-0.049 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
.+..+....++..++.....-+.+.++.++ ++.|+. ..| +.+..+.+...+.+.+.++++||+||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~-lg~s~~-------------~~g-~~~s~~~~~~~i~~~~~G~l~Dr~g~ 80 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHD-LGFGNT-------------MVG-IAVGIQFLATVLTRGYAGRLADQYGA 80 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHh-cCCcHH-------------HHH-HHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 444555666666665444444445454432 333321 223 24556788888899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCc
Q 012601 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (460)
Q Consensus 310 r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~ 389 (460)
|+++.++.+..+++.+......... . . ...+....++.-.+.|++.+.......+++.+..|+ +++
T Consensus 81 r~~l~~~~~~~~~~~~~~~~~~~~~-~-----~------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r 146 (392)
T PRK12382 81 KRSALQGMLACGLAGLAYLLAAILP-V-----S------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP--KHS 146 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccc-c-----c------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc--ccc
Confidence 9999998887766554332221100 0 0 001245566666788999887777767788888886 456
Q ss_pred ccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 390 G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
|+.+|+.+....++..+.+.+.+.+.+..|. ...+.+..+..++..++ ....||.+
T Consensus 147 ~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~-~~~~~~~~ 202 (392)
T PRK12382 147 GKVMSWNGMAMYGALAAGAPLGLLLHSHFGF--AALALTTMVLPLLAWAF-NGTVRKVP 202 (392)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHH-HHhccCCC
Confidence 8899999999999999998887777665552 23444444444433332 23456543
No 145
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.64 E-value=1.7e-07 Score=97.90 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+...++.+...+.+.+.+++.||+|||+++.++.++.+++.+.+.+..... + +.....+...+.
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~l~~~~~l~ 128 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWAT-S---------------SIAIMFVLLFLN 128 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccccc-c---------------hHHHHHHHHHHH
Confidence 345567777888899999999999999999999888888776554432110 0 133444555667
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.+.......+++.|+.|++ ++|+.+|+.++...++..+.+.+.+.+.+...+ ....|.+.++++++.++...++
T Consensus 129 g~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 129 GWFQGMGWPPCGRTMVHWWSQS--ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND-WHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHHhhcchHHHHHHHHHhcCcc--cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 8777766666667888988863 568999999999999998887766654433222 2457888888888877777777
Q ss_pred cCCC
Q 012601 444 LPHL 447 (460)
Q Consensus 444 vpe~ 447 (460)
+||+
T Consensus 206 ~~~~ 209 (438)
T TIGR00712 206 MRDT 209 (438)
T ss_pred ccCC
Confidence 7765
No 146
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.64 E-value=1.5e-07 Score=95.56 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+...+.+++.||+|||+++..+.++.+++.....+.. + .+...+...+.|
T Consensus 31 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~~~l~g 90 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ----T----------------IDQLIYMRFLHG 90 (377)
T ss_pred HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHHH
Confidence 44557777888899999999999999999999988888776655443 2 445566677789
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......+++.|..|+ +++|+.+|+.+....++.++.+.+.+.+.+..+. ...|.+.+++.++..++..+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 91 LAAAAASVVINALMRDMFPK--EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSW--HAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHhC
Confidence 98888777778899999886 4568999999999999999999888777765553 3578888888888777766777
Q ss_pred CCCCC
Q 012601 445 PHLSS 449 (460)
Q Consensus 445 pe~~~ 449 (460)
||++.
T Consensus 167 ~~~~~ 171 (377)
T PRK11102 167 PETLP 171 (377)
T ss_pred CccCc
Confidence 87643
No 147
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.62 E-value=2.7e-07 Score=97.09 Aligned_cols=152 Identities=14% Similarity=0.042 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+....+.+..++.+++.+++.||+|||+++.++.++++++.++.++....... . .+++.......++.-.+.
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~-----~---~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTS-----I---GPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccc-----c---cccchhHHHHHHHHHHHH
Confidence 45566788888999999999999999999999999998877665542110000 0 000101134455666789
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce--------ecccCccchhHhHHHHHHHH
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD--------ALFGGGNIPAFVLASLSALA 435 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~--------~~~g~~~~~~f~~~~v~~li 435 (460)
|++.+....+..++++|+.|++ .+|+.+|+.+....+++++++...+.+. +..| .+++|.+.++++++
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g--Wr~~f~~~~~~~~~ 206 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAH--IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG--WRYMFASEAIPALL 206 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC--hHHHHHHHHHHHHH
Confidence 9999999999999999999974 4689999999999999998876543332 2222 34578888888877
Q ss_pred HHHHhhhccCCCC
Q 012601 436 GGVVATLKLPHLS 448 (460)
Q Consensus 436 a~~~~~~~vpe~~ 448 (460)
..+ ..+++||+.
T Consensus 207 ~~~-~~~~l~~s~ 218 (479)
T PRK10077 207 FLM-LLYFVPETP 218 (479)
T ss_pred HHH-HHHcCCCCc
Confidence 655 356789874
No 148
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.62 E-value=6.2e-07 Score=92.21 Aligned_cols=185 Identities=15% Similarity=0.056 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
|.++.++...|+.+.++..+.-+.+.|+.+ .++.++. ..| +.+.++.+...+.+.+.+++.||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~-------------~~g-~~~~~~~l~~~i~~~~~G~l~Dr~g 66 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHD-VNGLSKT-------------DTG-IVFSCISLFSILFQPLFGLISDKLG 66 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345667777888888888888788888765 3444321 223 3566788889999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCC
Q 012601 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~ 388 (460)
||+.+..+....+++.......... +. . .........+...+.|++++......-+++.+.. ++
T Consensus 67 rr~~~~~~~~~~~~~~~~~~~~~~~--~~----~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~ 130 (396)
T TIGR00882 67 LKKHLLWIISGLLVLFAPFFIYVFG--PL----L------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----RN 130 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh--hH----H------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----hh
Confidence 9999988776665544322211100 00 0 0000112233334566666655444333333322 33
Q ss_pred cccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 389 ~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
.+.++|.......++..+.+.+.|.+.+. + ....|.+.+++.++.+++++...||.
T Consensus 131 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 131 SNFEYGKARMFGCVGWALCASIAGILFSI-D--PQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred cccccchhhhhcccHHHHHHHHHhhhhcc-C--chHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46677888888899999999887766543 4 23578888888888777665555553
No 149
>PRK11043 putative transporter; Provisional
Probab=98.62 E-value=4.9e-07 Score=93.01 Aligned_cols=137 Identities=11% Similarity=0.004 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+.++.+...+.+++.+++.||+|||+++..+.++.+++.+...+.. + .+..++...+.|
T Consensus 46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~G 105 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE----S----------------AAQLLVLRFVQA 105 (401)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHHH
Confidence 45566777788899999999999999999999888887766555433 1 344555566777
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......+++.|..|++ +.+...+..+....++..+.+.+.+.+.+..|. ...|.+.+++.++..+...++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~ 181 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQ--KANRVFATIMPLVALSPALAPLLGAWLLNHFGW--QAIFATLFAITLLLILPTLRLK 181 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHcC
Confidence 777666555567888988863 456677888888888888998888887776653 3468877777777766554433
Q ss_pred C
Q 012601 445 P 445 (460)
Q Consensus 445 p 445 (460)
|
T Consensus 182 ~ 182 (401)
T PRK11043 182 P 182 (401)
T ss_pred C
Confidence 3
No 150
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.5e-08 Score=103.93 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=68.6
Q ss_pred cccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHH
Q 012601 50 ANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT 129 (460)
Q Consensus 50 a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~ 129 (460)
+--.+...+..+|+|..|.+||+++++|..+.+.+|..+||.+|.. -.+. ...||+.|...+++.+
T Consensus 134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~--va~~------------~~~Wr~af~~~avl~v 199 (493)
T KOG1330|consen 134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV--VASL------------TFWWRWAFRGSAVLGV 199 (493)
T ss_pred chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee--eccC------------ccceEEEEEeehHHHH
Confidence 3334455689999999999999999999999999999999999975 2221 1359999999999999
Q ss_pred HHhhheeEEeeccCCC
Q 012601 130 LCALVTIYFADEVPLT 145 (460)
Q Consensus 130 i~~~itl~~v~E~p~~ 145 (460)
++.++..++++|+++.
T Consensus 200 i~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 200 IVGLLVFLFVREPERG 215 (493)
T ss_pred HHHHHHHhhccCcccc
Confidence 9999999999998754
No 151
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.61 E-value=3.9e-07 Score=96.37 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+..+.+...+..++.+++.||+|||+++.++.++.+++.+...+.. + .+..++...+.|
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~G 119 (496)
T PRK03893 60 LISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP----G----------------YWTLFIARLVIG 119 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----H----------------HHHHHHHHHHHH
Confidence 44456667788899999999999999999999988888776666543 2 455666777889
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.......+++.|..|++ .+|..+|+.+....+++++.+.+.+.+.+..+. .+.|.++.+..++ +++....+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w--~~~f~~~~~~~~~-~~~~~~~~ 194 (496)
T PRK03893 120 MGMAGEYGSSATYVIESWPKH--LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW--RALFFIGILPIIF-ALWLRKNL 194 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHH-HHHHHHhC
Confidence 998888788888999999874 468888999999999999999988887776552 3466665444333 33334556
Q ss_pred CCCC
Q 012601 445 PHLS 448 (460)
Q Consensus 445 pe~~ 448 (460)
||.+
T Consensus 195 p~~~ 198 (496)
T PRK03893 195 PEAE 198 (496)
T ss_pred CCch
Confidence 7653
No 152
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.59 E-value=4.8e-07 Score=93.17 Aligned_cols=183 Identities=17% Similarity=0.056 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
++.+.+.+..|+..++...+..+.+.|+.++ ++.++. ..|. ......+...+.+.+.+.+.||+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~~~s~~-------------~~g~-~~~~~~~~~~~~~~~~~~~~dr~g 79 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDE-VHARPA-------------MVGF-FFTGSAVIGILVSQFLAGRSDKRG 79 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHH-------------HHHH-HHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445677778888888777777777766542 333311 2222 222334444445445555599999
Q ss_pred chhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCC
Q 012601 309 SRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGG 387 (460)
Q Consensus 309 ~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~ 387 (460)
|||.++ .+.++.+++.....+.. + .+..++...+.|...+.....-.+++.+..++++|
T Consensus 80 ~r~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (393)
T PRK15011 80 DRKSLIVFCCLLGVLACTLFAWNR----N----------------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR 139 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhh----H----------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc
Confidence 998765 55555445444333332 1 22222222233333343333434555665554334
Q ss_pred CcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 388 GQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 388 ~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
..+.+.|+.+....+++++.+.+.+.+.+..|- ...|.+.++..++.++.+++.+||.+
T Consensus 140 ~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw--~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 140 EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSF--TVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 446667888999999999999988888776663 35788888888888777777788764
No 153
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.59 E-value=5.6e-07 Score=104.96 Aligned_cols=115 Identities=14% Similarity=-0.002 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+...++.+..++.+++.|+++||+|||++++++.++.++..+++.+.... + +.+.+++...+.
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--~---------------~~~~l~~~r~l~ 113 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--G---------------WFWLAFAVTFLL 113 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--c---------------cHHHHHHHHHHH
Confidence 45566777788899999999999999999998887666555444433211 1 255677777889
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 417 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~ 417 (460)
|++.+....+-+++++|+.|++ .+|..+|+.+....++.++++++.+.+.+.
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKE--NLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcc--cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888899999999874 568899999999999999999988877654
No 154
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.59 E-value=3e-07 Score=98.47 Aligned_cols=180 Identities=16% Similarity=0.110 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
|.++.+|+.++++.+|.....+=.+-++.+ . .++ ...+| +......+-.++.+++.|.+.||++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-l-t~S-------------~~~va-lv~~a~~LP~~Llsl~aG~laDr~d 73 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQ-L-TGS-------------PLMVA-LVQAASTLPILLLSLFAGALADRFD 73 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hCC-------------HHHHH-HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456777888777766643333223322211 1 122 11222 2334455667888999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCC
Q 012601 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~ 388 (460)
|||+++.++++.++..+.+++.... + ..+.+.++++..+.|++.+.....-.+++.|.+|+ +.
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~--~-------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--~~ 136 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFF--G-------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--ED 136 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh--C-------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--hh
Confidence 9999999999887766554443321 1 11367778888889999999999999999999987 45
Q ss_pred cccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 389 ~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
.....++.++...+++++.|.++|.++...|.. ++|.+.++..+++.++...+
T Consensus 137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~--~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 137 LPAANALNSISFNIARIIGPALGGILVAFFGAA--AAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 677789999999999999999999999888743 47888887666655544333
No 155
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.58 E-value=6.1e-07 Score=93.07 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
..+.+.+..|+.+.++..+.-|.+.|+.+ .++-++ . ..| +...++.+...+.+.+.+++.||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~---------~----~~g-~~~s~~~l~~~i~~~~~G~l~Dr~g~ 75 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHD-INGLSG---------T----DTG-IIFSANSLFALLFQPLYGLISDKLGL 75 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH---------H----HHH-HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45566677777777776667777777765 233332 1 222 34567888899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCc
Q 012601 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (460)
Q Consensus 310 r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~ 389 (460)
|++..++..+.+++.......... . .. ..-....+...++..+.......+++..+.++..++.
T Consensus 76 r~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (420)
T PRK09528 76 KKHLLWIISGLLVLFGPFFIYVFA--P-------------LL-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRS 139 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--H-------------HH-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhc
Confidence 999988766655443322111100 0 00 0001111112222222222222223333333222456
Q ss_pred ccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 390 G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
|..+|..+....+++.+.+.+.|.+.+. +. ..+|.+.++.++++.+..++..||
T Consensus 140 g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~--~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 140 GFEYGRARMWGSLGWALCAFIAGILFNI-NP--QINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred cccchhhHHhhhHHHHHHHHHHHHHHhc-Cc--hHhHHHHHHHHHHHHHHHhccccc
Confidence 8889999999999999999988877653 32 357888888887777766555544
No 156
>TIGR00898 2A0119 cation transport protein.
Probab=98.57 E-value=2.9e-07 Score=97.72 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+...++.+..++.+++.+++.||+|||+++.++.++.+++.++.++.. + .+..++...+.
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~r~l~ 190 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP----N----------------YTVFLVFRLLV 190 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc----c----------------HHHHHHHHHHH
Confidence 355567777888899999999999999999999888887776655543 2 55667777889
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.+....+.+++++|+.|++ .+|..+++.+....++.++.+.+.+.+.+ ..+.|.+.++..++..+.. ++
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----wr~~~~~~~i~~~~~~~~~-~~ 262 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKK--QRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----WRWLQLAVSLPTFLFFLLS-WF 262 (505)
T ss_pred HhhccchHHHHHHHhheecChh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999874 45888899999999998888876544432 2346788888777776655 67
Q ss_pred cCCC
Q 012601 444 LPHL 447 (460)
Q Consensus 444 vpe~ 447 (460)
+||+
T Consensus 263 ~~es 266 (505)
T TIGR00898 263 VPES 266 (505)
T ss_pred cCCC
Confidence 8886
No 157
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.55 E-value=3.9e-07 Score=91.49 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+.+.+++.||+|||+++.++.++.+++.+...+.. + .+..++...+.|
T Consensus 43 ~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g 102 (377)
T TIGR00890 43 WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD----S----------------LAALYLTYGLAS 102 (377)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH----H----------------HHHHHHHHHHHh
Confidence 45567778888999999999999999999999999888887666554 2 455556666889
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+.........+.++.|+ ++|+.+|+.+....++.++.+...+.+.+..| ..+.|.+.+++.++.++...+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 103 AGVGIAYGIALNTAVKWFPD---KRGLASGIIIGGYGLGSFILSPLITSVINLEG--VPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHHHHHHhHHHHHHHHcCc---ccHHHHHHHHHhcchhHhHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHhe
Confidence 98887777766777887764 45889999999998888776655555554443 24578888888887777666555
Q ss_pred CC
Q 012601 445 PH 446 (460)
Q Consensus 445 pe 446 (460)
||
T Consensus 178 ~~ 179 (377)
T TIGR00890 178 GY 179 (377)
T ss_pred ec
Confidence 43
No 158
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.54 E-value=1.5e-06 Score=92.39 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhh
Q 012601 289 NSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLA 368 (460)
Q Consensus 289 ~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a 368 (460)
..+...+.+++.+++.||+|||+++.++.++++++.+++++..... . . .++.....++.-.+.|++.|
T Consensus 66 ~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~-~-----~------g~~a~~~l~~~R~l~G~g~g 133 (490)
T PRK10642 66 PFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYA-T-----I------GIWAPILLLLCKMAQGFSVG 133 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHH-H-----H------HHHHHHHHHHHHHHHHhHhH
Confidence 4445667899999999999999999999999999888777765210 0 0 00001235556678999999
Q ss_pred hhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee--------cccCccchhHhHHHHHHHHHHHHh
Q 012601 369 ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA--------LFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 369 ~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~--------~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
...+...++++|..|++ ++|+.+|+.+....++.++++.+...+.. ..| .++.|+++++.++++.+ .
T Consensus 134 ~~~~~~~~~~~e~~p~~--~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~g--WR~~f~i~~~~~l~~~~-~ 208 (490)
T PRK10642 134 GEYTGASIFVAEYSPDR--KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWG--WRIPFFIALPLGIIGLY-L 208 (490)
T ss_pred hhHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCcc--HHHHHHHHHHHHHHHHH-H
Confidence 98888899999999874 45888899887777777666644322211 222 34578887776665443 4
Q ss_pred hhccCCC
Q 012601 441 TLKLPHL 447 (460)
Q Consensus 441 ~~~vpe~ 447 (460)
.+.+||+
T Consensus 209 ~~~~~es 215 (490)
T PRK10642 209 RHALEET 215 (490)
T ss_pred HHcCCCC
Confidence 5678886
No 159
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.54 E-value=6.5e-07 Score=92.74 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+...++.+...+.+.+.+++.||+|||+++.++.++++++.+...+.... ...+..++...+.
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~r~l~ 137 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA-----------------LSVEMLIVGRVLL 137 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc-----------------cchHHHHHHHHHH
Confidence 35566778889999999999999999999999998888877665443311 0134566677889
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcc---ccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA---GPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~---g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
|++.+.......++++|..|++ .+|+.+|+.+....+++++.+.+. +.+.+..+ ..+.|.+.++..++..+ .
T Consensus 138 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--w~~~f~~~~~~~~~~~~-~ 212 (481)
T TIGR00879 138 GIGVGIASALVPMYLSEIAPKA--LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG--WRIPLGLQLIPAGLLFL-G 212 (481)
T ss_pred HhhhhHHHhHHHHHHHccCChh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHH-H
Confidence 9999998888899999999874 468889999999999999999876 44433333 34578886666655544 3
Q ss_pred hhccCCCC
Q 012601 441 TLKLPHLS 448 (460)
Q Consensus 441 ~~~vpe~~ 448 (460)
.+++||+.
T Consensus 213 ~~~l~~~~ 220 (481)
T TIGR00879 213 LFFLPESP 220 (481)
T ss_pred HhcCCCCh
Confidence 46678763
No 160
>PRK03699 putative transporter; Provisional
Probab=98.53 E-value=1.7e-06 Score=89.04 Aligned_cols=133 Identities=13% Similarity=0.024 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+++.+++.||+|||+++..+.++.+++.+.+.+.. + .+..++...+.|
T Consensus 47 ~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~----~----------------~~~~~~~~~l~G 106 (394)
T PRK03699 47 TFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH----S----------------LALFSIAMFVLG 106 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc----h----------------HHHHHHHHHHHH
Confidence 34456667778899999999999999999999888887776655543 1 445566677889
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec-ccCccchhHhHHHHHHHHHHHHhh
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL-FGGGNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~-~g~~~~~~f~~~~v~~lia~~~~~ 441 (460)
++.+...+...+++.|..|+ +++|..+++.+....++..+.+...+.+++. .| ..+.|...+++.++..++.+
T Consensus 107 ~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g--w~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 107 VVSGITMSIGTFLITHVYEG--KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE--WYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred HhhHhhccchhHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHH
Confidence 98888888878899999976 4568888998888888888888877766543 33 24567777777666555443
No 161
>PRK09952 shikimate transporter; Provisional
Probab=98.53 E-value=1.4e-06 Score=91.31 Aligned_cols=143 Identities=7% Similarity=0.049 Sum_probs=97.0
Q ss_pred HHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhh
Q 012601 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (460)
Q Consensus 291 i~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (460)
+...+.+++.+++.||+|||+.+.++.++++++.+++++....... .++.....+++-.+.|++.+..
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~R~l~G~~~g~~ 142 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTI------------GWWAPVLLVTLRAIQGFAVGGE 142 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHH------------HHHHHHHHHHHHHHHHhhhccc
Confidence 3455678899999999999999999999999888777766421000 0001123555567789999887
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc------CccchhHhHHHHHHHHHHHHhhhcc
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG------GGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g------~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
...-.++++|..|++ ++|+.++..+....++.++++...+.+....+ ...+..|.++++..+++. .....+
T Consensus 143 ~~~~~~~~~e~~p~~--~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~ 219 (438)
T PRK09952 143 WGGAALLAVESAPKN--KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGM 219 (438)
T ss_pred HHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhC
Confidence 777778999999974 45888899999888888877655443322111 112457888887765543 334557
Q ss_pred CCCC
Q 012601 445 PHLS 448 (460)
Q Consensus 445 pe~~ 448 (460)
||++
T Consensus 220 ~es~ 223 (438)
T PRK09952 220 EESA 223 (438)
T ss_pred CCCh
Confidence 7763
No 162
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.53 E-value=5.2e-07 Score=95.17 Aligned_cols=144 Identities=16% Similarity=0.069 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+..++.+++.||+|+|+++.++.++.+++.+.+.+......+ +....++...+.|
T Consensus 69 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~r~l~G 133 (467)
T PRK09556 69 IGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV---------------SLGLMIALWALSG 133 (467)
T ss_pred HHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc---------------hHHHHHHHHHHHH
Confidence 4445777788889999999999999999999888877766555543110001 2556666777889
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec-ccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL-FGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~-~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
++.+.......+++++..|++ ++|+.+|+.+....++.++++.+...+... .++.....|.+.++..++.++..+++
T Consensus 134 ~~~~~~~~~~~~~i~~~~~~~--~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 134 FFQSTGGPCSYSTITRWTPRR--KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred HHHhccchHHHHHHHHHcCcc--ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 998888888889999999874 569999999999999999988776554443 22112335777777766655555544
Q ss_pred cC
Q 012601 444 LP 445 (460)
Q Consensus 444 vp 445 (460)
+|
T Consensus 212 ~~ 213 (467)
T PRK09556 212 GS 213 (467)
T ss_pred CC
Confidence 43
No 163
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.51 E-value=1.8e-06 Score=90.02 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=99.8
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
...+.+++.+++.||+|||+++.++.++++++.+.+++...... +. .......+++-.+.|++.|...
T Consensus 75 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~l~~~R~l~G~g~g~~~ 142 (432)
T PRK10406 75 MRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYET------IG------TWAPALLLLARLFQGLSVGGEY 142 (432)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchh------HH------HHHHHHHHHHHHHHHhhhhhhH
Confidence 44578999999999999999999999999888877666541100 00 0012345566678999999888
Q ss_pred CccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee--------cccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA--------LFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 372 ~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~--------~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
....++++|..|++ ++|+..++.+....++.++++...+.+.. ..| .+..|.++++.+++..+ ....
T Consensus 143 ~~~~~~i~e~~p~~--~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g--Wr~~F~i~~~~~ll~~~-~~~~ 217 (432)
T PRK10406 143 GTSATYMSEVAVEG--RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG--WRIPFALGAVLAVVALW-LRRQ 217 (432)
T ss_pred hhHHHHHHHhCCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc--hHHHHHHHHHHHHHHHH-HHhc
Confidence 88899999999874 45888899888888888877765333221 222 35578888888877644 3456
Q ss_pred cCCCC
Q 012601 444 LPHLS 448 (460)
Q Consensus 444 vpe~~ 448 (460)
+||++
T Consensus 218 ~~e~~ 222 (432)
T PRK10406 218 LDETS 222 (432)
T ss_pred CCCCc
Confidence 78864
No 164
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.50 E-value=5.7e-07 Score=95.83 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+..++.+++.+++.||+|||+++.++.+++.++.+..++.... . +..+....++.-.+.|
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~------------~~~~~~~~~~~r~l~G 126 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--S------------PKSVMATLCFWRFWLG 126 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--c------------cchHHHHHHHHHHHHH
Confidence 4455667788889999999999999999999988888876655543210 0 1011455677777899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec---------------------ccCccc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL---------------------FGGGNI 423 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~---------------------~g~~~~ 423 (460)
++.+.......++++|..|.+ .+|+.+++++.+..+++++++.+.+.+... .+...+
T Consensus 127 ~~~g~~~~~~~~~~~e~~p~~--~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 127 VGIGGDYPLSAIITSEFATKK--WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHhhhhHHHHHHHHHhcChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 999998888899999999984 568899999999999998888765443211 011134
Q ss_pred hhHhHHHHHHHHHHHHhhhccCCC
Q 012601 424 PAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 424 ~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
.+|.+.++.+++..++ .+++||+
T Consensus 205 ~~~~~~~ip~~i~~~~-~~~lpES 227 (502)
T TIGR00887 205 ILIGFGAVPALLALYF-RLTIPET 227 (502)
T ss_pred HHHHHHHHHHHHHHHH-HHhCCCC
Confidence 4677777777765554 4678997
No 165
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.49 E-value=1.3e-06 Score=91.68 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+..+.+...+.+.+.+++.||+|||++++++.++.+++.+...+..... + +....++...+.|
T Consensus 68 ~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~-~---------------~~~~~~~~~~l~g 131 (452)
T PRK11273 68 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-S---------------SIAVMFVLLFLCG 131 (452)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc-c---------------cHHHHHHHHHHHH
Confidence 45567777888899999999999999999999988888777665543110 0 1344555566778
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHH-HhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMI-VSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil-~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
++.+.....--+++.+..|+ +.+|+.+|+.+....++..+ .++....+....| ..+.|.+.++..++..+...++
T Consensus 132 i~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g--w~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 132 WFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND--WHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred HHHhccchHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 87775544334577788776 45688999999988887644 3332222211122 2457888777777766666667
Q ss_pred cCCC
Q 012601 444 LPHL 447 (460)
Q Consensus 444 vpe~ 447 (460)
+||+
T Consensus 208 ~~~~ 211 (452)
T PRK11273 208 MRDT 211 (452)
T ss_pred ccCC
Confidence 7764
No 166
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.49 E-value=1.3e-06 Score=102.22 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHH--HHHHhhhhccccccCccccCCCCcchhHHHHHHHHH
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMA--TTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (460)
+...++.+..++++.+.|+++||+|||+++........+..+ .+.+.. + +.+..+++..
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~----~---------------s~~~l~~~~~ 116 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL----N---------------SVPLLFAALF 116 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----h---------------hHHHHHHHHH
Confidence 456678888899999999999999999976432222111111 122111 1 2567778888
Q ss_pred HhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhh
Q 012601 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 362 ~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~ 441 (460)
+.|++.+.......+++.+..|+ +..+..+|+.+....+++++.+.+.|.++...|. .+.|+..+++.+++.+ +.
T Consensus 117 l~gi~~a~~~p~~~a~l~~~~~~--~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~--~~~~~~~~~~~~~~~~-~~ 191 (1140)
T PRK06814 117 LMGIHSALFGPIKYSILPDHLNK--DELLGANALVEAGTFIAILLGTIIGGLATISGNF--VILVALLMGIAVLGWL-AS 191 (1140)
T ss_pred HHHHHHHhhchHHHHhhHhhcCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHH-HH
Confidence 99999999999999999999997 4568899999999999999999999988876552 3456444444454444 44
Q ss_pred hccCCCC
Q 012601 442 LKLPHLS 448 (460)
Q Consensus 442 ~~vpe~~ 448 (460)
+.+|+++
T Consensus 192 ~~~~~~~ 198 (1140)
T PRK06814 192 LFIPKTG 198 (1140)
T ss_pred hhCCCCC
Confidence 5666653
No 167
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.49 E-value=1.6e-06 Score=89.34 Aligned_cols=129 Identities=13% Similarity=0.018 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+....+.+...+.+.+.+++.||+|||+++..+.++++++++...+.. + .+..++...+.
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~----~----------------~~~ll~~r~l~ 107 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP----Q----------------SALLLSSALLG 107 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc----c----------------hHHHHHHHHHH
Confidence 455566777888899999999999999999999999999988777654 2 45566777889
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHH
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG 436 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia 436 (460)
|++.+.......+++.++.|+ ++|+.+|+++....++..+.+.+.+.+.+..++ ....+...++..+++
T Consensus 108 Gig~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~-w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 108 GVGIGIIQAVMPSVIKRRFQQ---RTPLVMGLWSAALMGGGGLGAAITPWLVQHSET-WYQTLAWWALPAVVA 176 (393)
T ss_pred HhHHHHHhhhhhHHHHHHccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence 999998888888898888863 358999999999988888888877766654322 223444444444443
No 168
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.47 E-value=2.4e-06 Score=93.83 Aligned_cols=232 Identities=10% Similarity=0.083 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccc-----cccccccc---cccc
Q 012601 37 AFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG-----SWHRWFPF---LTSR 108 (460)
Q Consensus 37 i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~-----~~~~~~~~---~~~~ 108 (460)
..+.+++-.+.-++....+....+|+.|..|+++|++..++...+..+|..+|+++++.. ||....+. ....
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~ 251 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT 251 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 345556888889999999999999999999999999999999999999999999998752 22110000 0000
Q ss_pred hhhccccchhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCC
Q 012601 109 ACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESG 188 (460)
Q Consensus 109 ~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (460)
+.+- -+.|+..|++.+++.++..++ ++..||+.....++.+.++..+ . +.+.. +.
T Consensus 252 dprW-iGaWwl~Fli~g~l~~l~~v~-l~~~p~~lp~~~~~~~~~~~~~-------~---~~~~~------------~~- 306 (633)
T TIGR00805 252 DPRW-IGAWWIGFLICGGVALLTSIP-FFFFPKALPKEGKRVNVDVHET-------E---KLEKS------------ED- 306 (633)
T ss_pred CccH-HHHHHHHHHHHHHHHHHHHHH-HHhCccccCCcccccchhhhhh-------h---ccccc------------cc-
Confidence 0000 024777898888777665544 4556654321111000000000 0 00000 00
Q ss_pred cccchhhhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCC
Q 012601 189 HESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGN 268 (460)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~ 268 (460)
+ ... + . ......+...++.+.+- +.++...+..++...+++.+..|.+.|+.+ .|+-++.
T Consensus 307 --~---------~~~---~-~-~~~~~~~~~~~~~Ll~n-~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~-~~g~s~~-- 366 (633)
T TIGR00805 307 --K---------SRK---K-N-SDITKDFPKIIKRLLCN-PIYMLVILAQVIDSLAFNGYITFLPKYLEN-QYGISSA-- 366 (633)
T ss_pred --c---------cch---h-h-hhhHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHH--
Confidence 0 000 0 0 00001111112222222 355667788888888899999999998864 5654431
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhhhcCc--hhHHHHHHHHHHHHHH
Q 012601 269 DHEVKFYDQGVREGAFGLLLNSV-VLGVSSFLIEPMCRWIGS--RLVWAISNFIVFACMA 325 (460)
Q Consensus 269 ~~~~~~y~~gv~~G~~~l~~~si-~~~l~s~i~~~l~~riG~--r~l~~~g~~~~ai~~~ 325 (460)
..|. .+....+ ..++.+++.++++||+++ |++..++.++..++++
T Consensus 367 -----------~ag~-l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 367 -----------EANF-LIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred -----------HHHH-HhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 1111 1222232 345678889999999984 5666666665555543
No 169
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.46 E-value=1.1e-06 Score=92.80 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh----h
Q 012601 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR----W 306 (460)
Q Consensus 231 l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~----r 306 (460)
+.++|.+.+--.++|.....|.+.|+.+ ++-++ ...+ +...+..+..++...+.|.++| |
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~--lg~~~-------------~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr 69 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQE--LGIPH-------------AWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSR 69 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH-------------HHHH-HHHHHHHHHHHHHHhHeeehhcCCCCC
Confidence 4455666666677777777777776643 22221 0122 3445666778888889999999 5
Q ss_pred cCchhHHHHH-HHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCC
Q 012601 307 IGSRLVWAIS-NFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (460)
Q Consensus 307 iG~r~l~~~g-~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~ 385 (460)
+||||.++++ ....++++..+.+....... .....+.. + ..+..+..++.+.+..++....+.---|+++|..|++
T Consensus 70 ~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~-~~~~~~~~-~-~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~ 146 (477)
T TIGR01301 70 FGRRRPFIAAGAALVAFAVILIGFAADIGHL-FGDNLDKK-T-KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGD 146 (477)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhCchhhhh-cccccccc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCch
Confidence 9999999964 55555555555443210000 00000000 0 0001122333344456677766666678999999987
Q ss_pred CCCcccchhhhHHHHHHHHHHHhhccccc--eecc-----------cCccchhHhHHHHHHHHHHHHhhhccCCCCC
Q 012601 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPW--DALF-----------GGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (460)
Q Consensus 386 ~~~~G~~~Gi~n~~~~l~qil~~~~~g~l--~~~~-----------g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~ 449 (460)
+|+.+...+..+.+..++++++....+.. .+.+ ..+....|.+++++.+++.+..++.+||...
T Consensus 147 ~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 147 ARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 66678889999999999999999876543 1111 1122457999999999999888888998643
No 170
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.44 E-value=1.4e-06 Score=91.85 Aligned_cols=134 Identities=15% Similarity=0.081 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH-HHHhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV-FTLLGF 365 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gi 365 (460)
..+.+...+...+.++++||+|||++++.+.++++++.+..++.. + .+..++. ..+.|+
T Consensus 61 s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~l~G~ 120 (455)
T TIGR00892 61 SIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS----N----------------VIELYLTAGFITGL 120 (455)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHHHh
Confidence 344455566778899999999999999999888887776555543 1 2223322 245688
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
+.+.......+++.++.++ ++|+.+|+.+....++..+.+.+.+.+.+..| ..++|.+.+++.+++.++..+..|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~---~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g--wr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 121 GLAFNFQPSLTMLGKYFYR---RRPLANGLAMAGSPVFLSTLAPLNQYLFESFG--WRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred cchhhhhHHHHHHHHHHHh---hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8876555566788888863 45889999999999999999888888877665 345788888877766655444443
No 171
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.44 E-value=2.9e-06 Score=89.91 Aligned_cols=136 Identities=16% Similarity=0.065 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
...+.+...+..++.+++.||+|||++..++.++.+++++.+.+.. + ....++...+.|+
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----s----------------~~~l~~~r~l~G~ 136 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS----S----------------ATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHHHH
Confidence 3445556677789999999999999999998888887776655543 2 3344455566787
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec---cc----CccchhHhHHHHHHHHHHH
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL---FG----GGNIPAFVLASLSALAGGV 438 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~---~g----~~~~~~f~~~~v~~lia~~ 438 (460)
+.+... .....++++.|. +.+|+.+|+.+....++-.+.+.+.+.+... .+ ...+++|.+.+++.++.++
T Consensus 137 ~~~~~~-~~~~~i~~~~~~--~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l 213 (476)
T PLN00028 137 SLATFV-SCQYWMSTMFNG--KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI 213 (476)
T ss_pred HHHhhH-HHHHHHHHhcCh--hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence 777543 234567888986 4568888998765555555544443332211 00 0134578888888877776
Q ss_pred Hhhhcc
Q 012601 439 VATLKL 444 (460)
Q Consensus 439 ~~~~~v 444 (460)
+..++.
T Consensus 214 ~~~~~~ 219 (476)
T PLN00028 214 LVLTLG 219 (476)
T ss_pred HHHHHc
Confidence 654443
No 172
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.43 E-value=5.1e-06 Score=88.70 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhH----HHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 288 LNSVVLGVSSFLI----EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 288 ~~si~~~l~s~i~----~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
++.+...+.+.+. +++.||++.++.+.+|.++++++++.+.+......+ +.. .+.+..+....+.
T Consensus 324 ~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~--~~~---------vs~~~~~~~~~l~ 392 (500)
T PRK09584 324 LNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAND--AGI---------VSVNWLIASYGLQ 392 (500)
T ss_pred HhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCc---------cCHHHHHHHHHHH
Confidence 4444444444443 566666666788889999999998876665421100 000 1244566677789
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA 411 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~ 411 (460)
|++-.....+-++++.+..|+ +.+|..+|+..+...+++.+.+.+.
T Consensus 393 ~~ge~~~~p~g~s~~~~~aP~--~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 393 SIGELMISGLGLAMVAQLVPQ--RLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 4669999999888888887776655
No 173
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.42 E-value=3.6e-06 Score=86.22 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
..-+|+...++.+.++..+.+|+.||+++.....+|.++-+..++.. | ....++.-.+.|
T Consensus 53 lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp----~----------------f~~Ll~aR~~~g 112 (394)
T COG2814 53 LITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP----S----------------FAVLLLARALAG 112 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHH
Confidence 34469999999999999999999999999999999999888777665 2 667777888999
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.|.+..+-.++..+..|++ ++|+.+|+.+.-..+++++...+...+=+.+|- +.+|..-+++++++.+..++.+
T Consensus 113 ~a~G~f~~i~~~~a~~lvpp~--~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW--R~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 113 LAHGVFWSIAAALAARLVPPG--KRGRALALVFTGLTLATVLGVPLGTFLGQLFGW--RATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCcc--chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999984 568899999999999999987765566577774 5689999999999999888999
Q ss_pred C
Q 012601 445 P 445 (460)
Q Consensus 445 p 445 (460)
|
T Consensus 189 P 189 (394)
T COG2814 189 P 189 (394)
T ss_pred C
Confidence 9
No 174
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.41 E-value=2.3e-07 Score=95.41 Aligned_cols=139 Identities=15% Similarity=0.066 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
..+.++..+++-+.+.+.||+.||.++.+|.++.+++.++..+... .+.+.++-++.|+|
T Consensus 75 ~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~--------------------Fwq~~l~R~~vGiG 134 (493)
T KOG1330|consen 75 TVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH--------------------FWQVLLCRGFVGIG 134 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHhccc
Confidence 4577788889999999999999999999999999998888777752 57788888999999
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
-|.+.++--++|++.+|+. .+++.+|++|.++.++-.+.-...+.+-+..+. .++.|...++++++.++++.++++|
T Consensus 135 eAs~~~ia~s~IaD~f~~~--~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~-Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 135 EASYSPIAPSLIADSFPDD--KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW-WRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred hhhhcccchhHhhhcCcch--hhhHHHHHhhhhcccccceeEEeeeeeccCccc-eEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999999999985 458888999999998876665543333334432 4678999999999999999888877
Q ss_pred CC
Q 012601 447 LS 448 (460)
Q Consensus 447 ~~ 448 (460)
.+
T Consensus 212 P~ 213 (493)
T KOG1330|consen 212 PE 213 (493)
T ss_pred cc
Confidence 66
No 175
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.40 E-value=3.1e-06 Score=85.49 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=94.9
Q ss_pred HHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcC
Q 012601 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (460)
Q Consensus 293 ~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (460)
..+.+++.+++.||+|||+++.++.++++++.+...+....... ..+.....++.-.+.|++.+....
T Consensus 48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~r~l~G~~~~~~~~ 115 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATI------------GIWAPILLLLARLIQGFSLGGEWG 115 (394)
T ss_pred hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhh------------HHHHHHHHHHHHHHHHhhcccccc
Confidence 34678899999999999999999999988877666654311000 000112345555778999888888
Q ss_pred ccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc------CccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG------GGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 373 vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g------~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
...++++|..|++ ++|+.+++.+....+++++.+.+.+.+....+ ......|.+.+++.+++.++ ....||
T Consensus 116 ~~~~~~~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~ 192 (394)
T TIGR00883 116 GAALYLAEYAPPG--KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEE 192 (394)
T ss_pred ccHHHhhhcCCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 8888999999874 56899999999999999998876544322111 11234577776666655443 344565
Q ss_pred CC
Q 012601 447 LS 448 (460)
Q Consensus 447 ~~ 448 (460)
++
T Consensus 193 ~~ 194 (394)
T TIGR00883 193 TP 194 (394)
T ss_pred Ch
Confidence 43
No 176
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.40 E-value=2.5e-05 Score=82.27 Aligned_cols=259 Identities=16% Similarity=0.134 Sum_probs=156.3
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHh
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~ 132 (460)
++.+..-||++|++..|.|....++.+...+.|..++..+++. +.+. .+.-.+|.++++..++..
T Consensus 128 ~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~--~~~~-------------~~~a~~f~ia~~~~~~~~ 192 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY--LVKF-------------LGIALVFLIAAASGILSL 192 (463)
T ss_pred hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHh-------------cCchHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999976 3333 135578999999999999
Q ss_pred hheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCC
Q 012601 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (460)
Q Consensus 133 ~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (460)
....+++||+-..+++... .. .+..++. .
T Consensus 193 ~y~~~~l~Esl~~~~~~~~---~~-----------~~~~~~~----------------------------~--------- 221 (463)
T KOG2816|consen 193 LYMLLFLPESLQEKERSDA---TL-----------RELTPGS----------------------------L--------- 221 (463)
T ss_pred HHHhhccccccCccccccc---cc-----------cccCCCc----------------------------c---------
Confidence 9999999998643322210 00 0000000 0
Q ss_pred chhhHHHHHHHhc---cCCHHHHHHHHHHHHH-HHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHH
Q 012601 213 PGAVLVNLLTSLR---HLPPAMHVVLIVMALT-WLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL 288 (460)
Q Consensus 213 ~~~~~~~l~~s~~---~mP~~l~~l~l~~f~~-w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~ 288 (460)
......+.+++.+ +.+. ...+|++.++. +.-+-...-..+.|.. .-|+-|++ ..+. -...
T Consensus 222 ~~~~~~~~~~~~~~~~~~r~-~l~l~l~~~~~~~~~~~~~~~~~~~yl~-~~f~w~~~-------------~~s~-~~~~ 285 (463)
T KOG2816|consen 222 DSSHVADAFQSLTKVGPDRL-LLLLLLVAFLSSLPEAGGASDVLLLYLK-AKFGWNKK-------------EFSD-LLSL 285 (463)
T ss_pred cchhhhhhhhhhcccCCCcc-chHHHHHHHHHHHHHhcCceeEEEEEEe-eecCcCHH-------------HHHH-HHHH
Confidence 0000111222222 1222 22345444443 3333222211111111 23444421 1121 1223
Q ss_pred HHHHHHHH-HHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 289 NSVVLGVS-SFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 289 ~si~~~l~-s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
.+....+. .+.++.+.+.+|.|++..+|.+...+.++..++.... +..+...+..++.++..
T Consensus 286 ~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-----------------w~~~~~~v~~~~~~~~~ 348 (463)
T KOG2816|consen 286 VSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-----------------WMMFAAGVVVALAGIVF 348 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-----------------hhhhHHHHHHHhhcchh
Confidence 34445555 3445678888999998889999998888887776521 11233444444444444
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~ 416 (460)
... .+.++.+.+. +.+|+..++......+.+++.|...+.+..
T Consensus 349 pa~----~s~~s~~v~~--~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 349 PAI----RAFASILVSP--EEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHH----HhHHHhhccc--ccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 333 3467777765 456999999999999999999999988753
No 177
>PRK15075 citrate-proton symporter; Provisional
Probab=98.36 E-value=6.7e-06 Score=85.88 Aligned_cols=188 Identities=14% Similarity=0.099 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHhhhcCchh
Q 012601 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL-LLNSVVLGVSSFLIEPMCRWIGSRL 311 (460)
Q Consensus 233 ~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l-~~~si~~~l~s~i~~~l~~riG~r~ 311 (460)
..++..|+.++-...+.++.+....| |+.++. +++.-..+... ....+...+.+++.+++.||+|||+
T Consensus 19 ~~~~~~~~~~~d~~~~~~~~~~i~~~--~~~~~~---------~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~ 87 (434)
T PRK15075 19 RVTSGNFLEMFDFFLFGFYATAIAKT--FFPAGN---------EFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK 87 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCC---------chHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH
Confidence 45667777777766666666654443 443321 11111111111 1112223456888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCccc
Q 012601 312 VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGL 391 (460)
Q Consensus 312 l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~ 391 (460)
+++.+.++++++.+.+.+..... . +. . ......++.-.+.|++.+.......++++|..|++ .+|+
T Consensus 88 ~l~~~~~~~~~~~~l~~~~~~~~-~---------~~-~-~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~--~rg~ 153 (434)
T PRK15075 88 GLIVTLSIMASGTLLIAFVPGYA-T---------IG-L-AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG--RKGF 153 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHH-H---------HH-H-HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc--cchH
Confidence 99999999988877766654110 0 00 0 00012355556788888866555567899999874 5688
Q ss_pred chhhhHHHHHHHHHHHhhccccce--------ecccCccchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 392 AIGVLNLAIVIPQMIVSLGAGPWD--------ALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 392 ~~Gi~n~~~~l~qil~~~~~g~l~--------~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
.+|+.+....++..+++.+.+.+. +..| .++.|.+..+..++ .++.....||++
T Consensus 154 ~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~g--Wr~~f~~~~~~~~~-~~~~~~~~~e~~ 215 (434)
T PRK15075 154 YTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWG--WRIPFLIGCLIVPF-IFLIRRSLEETE 215 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc--hHHHHHHHHHHHHH-HHHHHHhcCCCH
Confidence 889988887777766665544331 2233 24467765543322 222334567753
No 178
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.36 E-value=8.4e-06 Score=86.54 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=122.5
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHh
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~ 132 (460)
....+..+++.--..+++|+.-.++.....++|+++|-++.+. .-+.... ..-..||++|++..++.++..
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g--~~~~~~~-------~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYG--VFKLNGS-------GGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHH--hhhhcCC-------CCcCCceeehhHHHHHHHHHH
Confidence 3344678888889999999999999999999999998887764 1111000 012479999999999988888
Q ss_pred hheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCC
Q 012601 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (460)
Q Consensus 133 ~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (460)
++..+.+|+.|-...-..+ +.+. ...++.+.+ ..+ +. .
T Consensus 221 i~~f~~lp~~P~~~~fl~~--~ek~-------~~~~~~~~~---------------------------~~~--~~-~--- 258 (495)
T KOG2533|consen 221 IVVFFFLPDNPSKAWFLTD--EEKE-------LVVERLRES---------------------------PSG--GI-E--- 258 (495)
T ss_pred heEEEEecCChhhccccch--HHHH-------HHHHHHHhc---------------------------cCC--Cc-c---
Confidence 8899999999852211000 0000 000000000 000 00 0
Q ss_pred chhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhcccccccee-ecCCCCCCChhhhhHHHHHHHHHHHHHHHHH
Q 012601 213 PGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREV-YHGDPKGNDHEVKFYDQGVREGAFGLLLNSV 291 (460)
Q Consensus 213 ~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~v-f~~~p~~~~~~~~~y~~gv~~G~~~l~~~si 291 (460)
++....++.+.+ ..+.++..++..|+++.-.+++.++.+.|+.+.. |.. . .... -...+.+
T Consensus 259 ~~~~~~~~~~a~--~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~-----------~----~a~~-ls~~~~~ 320 (495)
T KOG2533|consen 259 NKFKWKGFKEAL--KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSE-----------L----QANL-LSTPYDV 320 (495)
T ss_pred cccCHHHHHHHH--hchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcCh-----------H----Hhcc-ccchHHh
Confidence 102223333332 1235577899999999999999999999887611 211 0 0000 1123445
Q ss_pred HHHHHHHhHHHHhhh----cCchhHHHHHHHHHHH
Q 012601 292 VLGVSSFLIEPMCRW----IGSRLVWAISNFIVFA 322 (460)
Q Consensus 292 ~~~l~s~i~~~l~~r----iG~r~l~~~g~~~~ai 322 (460)
..+++.++.+.++|| ..+|.++.....++.+
T Consensus 321 ~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 321 GGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI 355 (495)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 677788888999999 5666666666555554
No 179
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.33 E-value=3.4e-06 Score=85.24 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+....+.+...+.+.+.+++.||+|||++..++.++.+++.+.. ... + .+..++...+.
T Consensus 39 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~----~----------------~~~l~~~~~~~ 97 (355)
T TIGR00896 39 LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP----G----------------TALLFAGTALI 97 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc----c----------------HHHHHHHHHHH
Confidence 35556777888899999999999999999999887777655433 211 1 34455666678
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHH
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG 436 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia 436 (460)
|++.+.......+++.+..|+ ++|+.+|+.+....+++.+.+.+.+.+.+..+......|...+++.+++
T Consensus 98 g~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 98 GVGIAIINVLLPSLIKRDFPQ---RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHhccchHHHHHhCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 888887666666777877753 4688999999999999999988877776554322233455555544443
No 180
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.31 E-value=8.5e-06 Score=85.78 Aligned_cols=145 Identities=18% Similarity=0.088 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhh-hccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISV-ISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
...++.+...+.-++.+++.||+|.|++..++.++.++..+.+.+... .. + +....+++..+.
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~-~---------------s~~~lli~r~l~ 138 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN-T---------------PFGIFIVIALLC 138 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC-C---------------CHHHHHHHHHHH
Confidence 344566667777788999999999999999999888887776665410 00 0 255677777788
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhh----HHHHHHHHHHHhhccc-cceecccCc-----------cchhHh
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVL----NLAIVIPQMIVSLGAG-PWDALFGGG-----------NIPAFV 427 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~----n~~~~l~qil~~~~~g-~l~~~~g~~-----------~~~~f~ 427 (460)
|++ +.........+++..|+ +++|+.+|+. |....+.|++.+.+.+ .+....|.. -..++.
T Consensus 139 Gig-g~~f~~~~~~vs~wfp~--~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~ 215 (462)
T PRK15034 139 GFA-GANFASSMGNISFFFPK--AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAW 215 (462)
T ss_pred HHH-HHhHHHHHHHHHHHCCH--hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHH
Confidence 887 55667778889999987 4568999998 7888888888876443 222322211 012345
Q ss_pred HHHHHHHHHHHHhhhccCCCC
Q 012601 428 LASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 428 ~~~v~~lia~~~~~~~vpe~~ 448 (460)
+.+++.+++++..++.+++.+
T Consensus 216 ~~~~~~iv~~i~~~~~~~~~~ 236 (462)
T PRK15034 216 IWVPLLAIATIAAWSGMNDIA 236 (462)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 666666666666666666543
No 181
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.30 E-value=1.2e-05 Score=83.50 Aligned_cols=112 Identities=7% Similarity=-0.158 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+.+.+.+++.||+|||++..+|.++++++.+........ + +.+..++...+.|
T Consensus 43 l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~--~---------------~~~~~l~~~~l~G 105 (410)
T TIGR00885 43 VQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI--M---------------NYTLFLVGLFILT 105 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh--c---------------cHHHHHHHHHHHH
Confidence 4456777888899999999999999999999999998887654332210 1 1445566667789
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~ 415 (460)
++.+.....-.+++.+..|+ +.+++.+++.+.+..++..+.+.+.+.+.
T Consensus 106 ~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 106 AGLGFLETAANPYILVMGPE--STATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hhHHHHHhhhhHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877666677777765 34688899999999999999998877664
No 182
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.29 E-value=2.4e-06 Score=85.95 Aligned_cols=136 Identities=18% Similarity=0.076 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH-HHHhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV-FTLLGFP 366 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gi~ 366 (460)
.|++..+++|...|.++||+|||.++.++....+++++..+... +. +++++ -.+.|+.
T Consensus 76 sF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------------------~F-~afv~aR~l~Gi~ 134 (451)
T KOG2615|consen 76 SFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------------------NF-AAFVLARFLGGIF 134 (451)
T ss_pred HHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------------------HH-HHHHHHHHhhhhc
Confidence 47788999999999999999999999999888888776555433 13 34444 6678998
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee---cccCccchhHhH----HHHHHHHHHHH
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA---LFGGGNIPAFVL----ASLSALAGGVV 439 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~---~~g~~~~~~f~~----~~v~~lia~~~ 439 (460)
-+ ...+.-|+++|+.++ +.++..|+..+++-.++-++.|.+.|.+.. ..|.+ +|.+ ..+++....++
T Consensus 135 kg-nl~v~rAiisdV~se--k~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~---p~alP~~~v~i~a~~~v~~ 208 (451)
T KOG2615|consen 135 KG-NLSVIRAIISDVVSE--KYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSY---PFALPCLLVFILAAGDVTF 208 (451)
T ss_pred cC-chHHHHHHHHhhcCh--hhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccC---chHHHHHHHHHHHHHHHHH
Confidence 88 557778999999987 456888899999999999999999888765 45543 2322 12222222344
Q ss_pred hhhccCCCCCC
Q 012601 440 ATLKLPHLSSN 450 (460)
Q Consensus 440 ~~~~vpe~~~~ 450 (460)
..+++|||...
T Consensus 209 ~~~~lpETL~~ 219 (451)
T KOG2615|consen 209 FPWFLPETLPL 219 (451)
T ss_pred HHHhCCccccc
Confidence 55789999654
No 183
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.27 E-value=3.6e-06 Score=88.52 Aligned_cols=140 Identities=8% Similarity=-0.064 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+..+.+...+..++.+++.||+|+|+++.++.++.+++.+++.+... + .....++.-.+.|
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~---------------~~~~l~~~r~~~G 142 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG---G---------------GIALVVFCRVIQG 142 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH---c---------------CchHHHHHHHHHH
Confidence 445577778888999999999999999999988877766554433221 1 1344566667899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecc-cCccchhHhHHHHHHHHHHHHhhhc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF-GGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~-g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
++.+.....-.++++|..|+ +.+|+.+|+.+....+++++.+.+.+.+.+.. |- ..+|.+.+++.++..++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw--~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKWAPP--KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGW--PMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HhcccchhhHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CeehhhhhHHHHHHHHHHHHH
Confidence 99999888888899999987 45689999999999999999999888877653 53 347888888877776665555
Q ss_pred cCC
Q 012601 444 LPH 446 (460)
Q Consensus 444 vpe 446 (460)
.||
T Consensus 219 ~~~ 221 (465)
T TIGR00894 219 PAD 221 (465)
T ss_pred hcC
Confidence 544
No 184
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.26 E-value=6e-06 Score=83.40 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=91.8
Q ss_pred HHhHHHHhhhc-----CchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhh
Q 012601 297 SFLIEPMCRWI-----GSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (460)
Q Consensus 297 s~i~~~l~~ri-----G~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (460)
.++.++++||+ ||||.|+ .+.+..+++++.+.+.... ...+.......+.++..+..
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~-----------------~~l~~l~~~~~~~~~~~~~~ 100 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS-----------------TDLPLLAGLAFLIAFFSATQ 100 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc-----------------hhHHHHHHHHHHHHHHHHHH
Confidence 77888999997 8999875 6777777766555544210 01333344444456666655
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCc------cchhHhHHHHHHHHHHHHhhhcc
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG------NIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~------~~~~f~~~~v~~lia~~~~~~~v 444 (460)
...-.+++.|..|++ ++|...|+......+++++++.+.+.+.+..|.+ ....|.+.+++.+++.+..++.+
T Consensus 101 ~~~~~a~~~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~ 178 (356)
T TIGR00901 101 DIALDAWRLEILSDE--ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLA 178 (356)
T ss_pred HHHHHHHHHHhCCHh--hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 555567899999764 5688889999999999999998887776665521 24568888888887776655567
Q ss_pred CCC
Q 012601 445 PHL 447 (460)
Q Consensus 445 pe~ 447 (460)
||.
T Consensus 179 ~e~ 181 (356)
T TIGR00901 179 KEP 181 (356)
T ss_pred cCC
Confidence 775
No 185
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.22 E-value=8.1e-06 Score=83.39 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
..+.+...++=++++.++||.+.|....+|+++-+++++++++..+ .....++..+-|..
T Consensus 71 s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s--------------------~~~~~~l~~lng~f 130 (448)
T COG2271 71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPS--------------------LFLFAVLWVLNGWF 130 (448)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhH--------------------HHHHHHHHHHHHHH
Confidence 3466777788899999999999999999999999999988887652 44555566666665
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcc--ccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA--GPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~--g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
.+.--+--..++++..|++ ++|+..++.|++..++-.+++.+. +.+....+ -...|.+.|+++++.+++.++.+
T Consensus 131 Qg~Gwpp~~~~i~~Wfsr~--eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~--w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 131 QGMGWPPCARTITHWFSRK--ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG--WRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred hcCCCcHHHHHHHHHcCcc--ccCceEEEehhhhhcccchHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHh
Confidence 5544444455788999875 459999999999999999998877 66654433 34579999999999888877665
Q ss_pred ---CCCCC
Q 012601 445 ---PHLSS 449 (460)
Q Consensus 445 ---pe~~~ 449 (460)
||+.|
T Consensus 207 rd~Pqs~G 214 (448)
T COG2271 207 RDRPQSEG 214 (448)
T ss_pred CCCccccC
Confidence 55554
No 186
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.20 E-value=5.7e-06 Score=88.49 Aligned_cols=136 Identities=19% Similarity=0.162 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
+..++-+-..+.+++.+.++||+|||++++++.++++++-+++++.. + .....++-.+.|
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~----~----------------~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP----N----------------YWMFLIFRFLSG 182 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC----c----------------HHHHHHHHHHHH
Confidence 44556667788899999999999999999999999988777777665 2 677888888999
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++.+....+.+.+++|+++++ .++..+.+ ..+.+.+..+.+...+.+.. +.++.+++.++.+++..++ +++.
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~~--~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~-~~l~ 254 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSPK--QRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLL-WFLP 254 (521)
T ss_pred hhccchhHHhHhhheeecCcc--hhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH-HHcc
Confidence 999999999999999999885 45777777 55556666666665666654 2355777777777776665 4555
Q ss_pred CCCC
Q 012601 445 PHLS 448 (460)
Q Consensus 445 pe~~ 448 (460)
||++
T Consensus 255 ~Es~ 258 (521)
T KOG0255|consen 255 PESP 258 (521)
T ss_pred CcCh
Confidence 5764
No 187
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=1.6e-05 Score=80.56 Aligned_cols=264 Identities=16% Similarity=0.142 Sum_probs=152.7
Q ss_pred ccchhHHHHHhcCCCccc-hhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHH
Q 012601 53 TVQGPARALLADLSGPDQ-RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLC 131 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~q-r~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~ 131 (460)
.....-.|+++|..|+|. |+++.++.--++++|-++|+-.|++ +.+.. ..+++|++.+++.++-
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGi--lYe~~-------------Gk~aPFlVL~~v~Lld 239 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGI--LYEFA-------------GKSAPFLVLAIVLLLD 239 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccc--hHhhc-------------CCcCcHHHHHHHHHHH
Confidence 344467889999999865 7999999999999999999999998 33332 4568999999888888
Q ss_pred hhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCC
Q 012601 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFND 211 (460)
Q Consensus 132 ~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (460)
..+-++.++.....+ +..
T Consensus 240 ~~L~l~vi~p~~~~~-~~~------------------------------------------------------------- 257 (464)
T KOG3764|consen 240 GALQLLVIEPTEMDP-DST------------------------------------------------------------- 257 (464)
T ss_pred HHHHHheeCccccCc-ccc-------------------------------------------------------------
Confidence 777666664322111 000
Q ss_pred CchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhh---ccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHH
Q 012601 212 GPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLF---DTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL 288 (460)
Q Consensus 212 ~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y---~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~ 288 (460)
.+...++++++ .|.- ++..+--|++..++.+- .+.|+.|... .|+ ++.|+ +.+-
T Consensus 258 ~~~~~~~~Ll~----dP~I----~~~agai~~~n~~lafLePtlslwm~e~m~--~p~--------w~~G~-----~fLp 314 (464)
T KOG3764|consen 258 EQGTPMWSLLM----DPYI----LLIAGAITFSNSSLAFLEPTLSLWMLETMF--TPG--------WEVGL-----AFLP 314 (464)
T ss_pred ccCccHHHHHh----CchH----hhhhcchhhccchHHHhCcccHHHHHHhcc--CCC--------cceee-----eecc
Confidence 01122333333 2222 22222223333332222 2344444332 121 22332 2233
Q ss_pred HHHHHHHHHHhHHHHhhhcCchh--HHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 289 NSVVLGVSSFLIEPMCRWIGSRL--VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 289 ~si~~~l~s~i~~~l~~riG~r~--l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
.++..++.+-+-+++.||++.-+ .-..|++..+++.....+.+. +...++.-...|++
T Consensus 315 ~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~--------------------~~~L~vp~~~l~~~ 374 (464)
T KOG3764|consen 315 ASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS--------------------IAQLWVPNFGLGFG 374 (464)
T ss_pred cccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh--------------------HHHHhhhhHHHHHH
Confidence 55667788888999999999433 222444444433333333331 23333333333333
Q ss_pred hhhhcCc----cchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHH
Q 012601 367 LAITYSV----PFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (460)
Q Consensus 367 ~a~~~~v----p~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~ 438 (460)
-+...+. -.-++-..|.++.+-.|...++...+.+++-.+.|.+.|.+++..|-+ |....-++.+++-+-
T Consensus 375 i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~--wl~~iig~~n~iyap 448 (464)
T KOG3764|consen 375 IGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE--WLMTIIGILNLIYAP 448 (464)
T ss_pred HHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH--HHHHHHHHHHHHHHH
Confidence 3332222 111222233332236788999999999999999999999999999854 566666666666444
No 188
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.14 E-value=2.2e-05 Score=83.60 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=94.5
Q ss_pred HHHHhHHHHhhhc-----CchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhh
Q 012601 295 VSSFLIEPMCRWI-----GSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLA 368 (460)
Q Consensus 295 l~s~i~~~l~~ri-----G~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a 368 (460)
+..++.++++||+ |||+.|+ ++++..+++...+++.... + +.+...+...+.|++.+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~--~---------------~l~~l~~~~~l~~~~~a 122 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPG--T---------------QLRWLAALAVVIAFCSA 122 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCc--c---------------hHHHHHHHHHHHHHHHH
Confidence 4678889999999 9999766 7777777766655554210 0 13445555566788777
Q ss_pred hhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee-cccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 369 ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA-LFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 369 ~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~-~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
.....--+++.|..|++ ++|+..|+.+....++.++++...+.+.+ ..| ....|.+.++..++..+.. +.+||+
T Consensus 123 ~~~i~~~a~~~~~~~~~--~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G--Wr~~f~i~a~l~ll~~l~~-~~~~e~ 197 (491)
T PRK11010 123 SQDIVFDAWKTDVLPAE--ERGAGAAISVLGYRLAMLVSGGLALWLADRYLG--WQGMYWLMAALLIPCIIAT-LLAPEP 197 (491)
T ss_pred HHHHHHHHHHHHhcChh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 66666668999999864 46888899999999999999888777766 334 3457888888777776654 347876
Q ss_pred C
Q 012601 448 S 448 (460)
Q Consensus 448 ~ 448 (460)
+
T Consensus 198 ~ 198 (491)
T PRK11010 198 T 198 (491)
T ss_pred c
Confidence 4
No 189
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.14 E-value=6.4e-05 Score=78.89 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
++.++..++...+-.+...+..-|+++..+.++.+++.+.-..+. ..-| ...++||-++......+.-...++.
T Consensus 262 ~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv-~~~n-----~~~Gi~d~~f~lgd~~l~~~~~~i~ 335 (433)
T PF03092_consen 262 IVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV-TRWN-----LDLGIPDQWFALGDTILEEVIGMIA 335 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE-EEEe-----eeeCcCCeEEEEEhHHHHHHHHHHH
Confidence 445555666666666666777888888887766654333211111 0001 1123444433333333333334444
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCc------cchhHhHHHHHHHHHHHHh
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG------NIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~------~~~~f~~~~v~~lia~~~~ 440 (460)
+-+.. .+++|.-|+. ..|+..|++.+...+++.++..+...+.+..+-. -...+.+++++.++...+.
T Consensus 336 ~mP~l----vl~a~lcP~G--~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll 409 (433)
T PF03092_consen 336 FMPSL----VLAARLCPKG--SEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL 409 (433)
T ss_pred HHHHH----HHHHHHCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 33322 2577888863 4588888888888888877777655554444321 1345777788786666654
Q ss_pred hhccCC
Q 012601 441 TLKLPH 446 (460)
Q Consensus 441 ~~~vpe 446 (460)
..+|+
T Consensus 410 -~lLp~ 414 (433)
T PF03092_consen 410 -FLLPP 414 (433)
T ss_pred -HHcCC
Confidence 44554
No 190
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.13 E-value=2.2e-05 Score=82.32 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=65.0
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhh----ccccchhHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACC----AACGNLKAA 120 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~----~~~~~~~~~ 120 (460)
.+.+++. ...+..|+|++|..-+++|.|+.+..+.-..+|.++|+.++... ..++..... ..=+++-.+
T Consensus 138 ~l~Gvg~-~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f------~~Lg~~G~~i~~~~~~n~YTap 210 (488)
T KOG2325|consen 138 ILTGVGV-GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF------TPLGEKGFMILPGLIFNMYTAP 210 (488)
T ss_pred HHcCcCc-ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH------hhhcCCceEEcCcceEEecchH
Confidence 3344432 44579999999999999999999999887788888888776431 000000000 001355566
Q ss_pred HHHHHHHHHHHhhheeEEeeccCCCCCCC
Q 012601 121 FLVAVVFLTLCALVTIYFADEVPLTVNQP 149 (460)
Q Consensus 121 f~i~~i~~~i~~~itl~~v~E~p~~~~~~ 149 (460)
-.+.+++-++..++..++.+|.++...++
T Consensus 211 ~w~m~i~~i~~~v~i~~~f~E~~~~~~~~ 239 (488)
T KOG2325|consen 211 AWLMAILWIIYIVIILFFFKEVYRGIIDK 239 (488)
T ss_pred HHHHHHHHHHHHHHHHhheeecccCcccc
Confidence 66777777777777888999988655443
No 191
>PRK10133 L-fucose transporter; Provisional
Probab=98.12 E-value=3.4e-05 Score=80.96 Aligned_cols=111 Identities=6% Similarity=-0.126 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
.+..+.+...+.+.+.+++.||+|||++..++..+++++.+....... . + +....++...+.|
T Consensus 66 ~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-a-~---------------~~~~ll~~r~l~G 128 (438)
T PRK10133 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-I-M---------------NYTLFLVGLFIIA 128 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-c-C---------------CHHHHHHHHHHHH
Confidence 455688888999999999999999999999999999988765421110 1 1 2556677778899
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccc
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW 414 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l 414 (460)
++.+.......+++.+..|+ +..+..+++.+....++..+++.+.+.+
T Consensus 129 ~g~g~~~~~~~~~v~~~~~~--~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 129 AGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHhhHHHHHHHhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888876544 2334468999999999999988765543
No 192
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.08 E-value=0.00014 Score=73.13 Aligned_cols=262 Identities=11% Similarity=0.088 Sum_probs=158.6
Q ss_pred HHHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchh
Q 012601 39 VFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLK 118 (460)
Q Consensus 39 ~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~ 118 (460)
....|..+...++.+.++-.+++|=.-.| ++-+...+.|+...++|+.++..+.-- +.+. .+.||
T Consensus 101 ~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavp--la~~------------~~gW~ 165 (395)
T COG2807 101 LLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVP--LAQH------------SGGWR 165 (395)
T ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhH--HHHh------------hccHH
Confidence 44466677888888888888888887775 446889999999999999998766532 2221 13688
Q ss_pred HHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhh
Q 012601 119 AAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHI 198 (460)
Q Consensus 119 ~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (460)
....+=+.+.++.+++ ..|...+ +..... +
T Consensus 166 ~aL~~WAl~allAl~~---WlPq~~r-~~~~~~---~------------------------------------------- 195 (395)
T COG2807 166 GALGFWALLALLALLI---WLPQALR-EQAASI---A------------------------------------------- 195 (395)
T ss_pred HHHHHHHHHHHHHHHH---Hhhhccc-cccccc---c-------------------------------------------
Confidence 8888777777666554 3444211 100000 0
Q ss_pred cccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHH
Q 012601 199 SKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQG 278 (460)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~g 278 (460)
.+..+-+.+|++ | .-|.+-+-.=++.+.+++.+...+.++.|..+.. +
T Consensus 196 -------------~~~~~~~~vw~~----~-~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa------------~-- 243 (395)
T COG2807 196 -------------TKLVSVRKVWRS----P-LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSA------------A-- 243 (395)
T ss_pred -------------cccccccccccC----c-hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCH------------H--
Confidence 000011223443 2 1233333333333334444444455554432221 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHH
Q 012601 279 VREGAFGLLLNSVVLGVSSFLIEPMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (460)
Q Consensus 279 v~~G~~~l~~~si~~~l~s~i~~~l~~ri-G~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (460)
..| +.+.+..++.+..++..|.+.+|. .+|++.+...+.+.++++++.+... ...+
T Consensus 244 -~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~---------------------~~~~ 300 (395)
T COG2807 244 -EAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG---------------------QLPI 300 (395)
T ss_pred -Hhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh---------------------hHHH
Confidence 122 234456778888899999999875 5677777777777777777765542 1122
Q ss_pred HHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCc
Q 012601 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG 421 (460)
Q Consensus 358 ~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~ 421 (460)
.-..++|++++....+-.+++....++. +..+.-.|..+..-|+=-...|..+|.+.|+.|+-
T Consensus 301 lw~~llG~G~G~~F~laL~li~~rs~~a-~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 301 LWALLLGLGQGGAFPLALTLILLRSSDA-AIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHHHhCccchHHHHHHHHHHhhcCCh-HHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 2246789999988888777777776654 45555556555555555566788889999999864
No 193
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00016 Score=73.74 Aligned_cols=274 Identities=17% Similarity=0.195 Sum_probs=145.7
Q ss_pred HHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccc-cccccccccccc---hh-hcccc
Q 012601 41 VIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG-SWHRWFPFLTSR---AC-CAACG 115 (460)
Q Consensus 41 v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~-~~~~~~~~~~~~---~~-~~~~~ 115 (460)
..++.++-.++..+|...-.|+.++-|++.-.+-.++.|.+.++|+++|.++++.. .|... ...... +. ...-.
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~-~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA-LTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh-hccCHHHHHHHHHHHHH
Confidence 34667778888888889999999999998888888999999999999999998752 11100 000000 00 00113
Q ss_pred chhHHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhh
Q 012601 116 NLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANL 195 (460)
Q Consensus 116 ~~~~~f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (460)
.+|.+|...+...+++.+. +.+.+.++.+....+
T Consensus 187 ~v~~pYl~~~~~lvll~v~----~~~~k~p~~~~~~~~------------------------------------------ 220 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVL----ILLSKLPDLQVAAPS------------------------------------------ 220 (422)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHhccCCcCCccccc------------------------------------------
Confidence 5777777766655444332 222222221111000
Q ss_pred hhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHh-hhhhhhhccccccceeecCCCCCCChhhhh
Q 012601 196 KHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLS-WFPFFLFDTDWMGREVYHGDPKGNDHEVKF 274 (460)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g-~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~ 274 (460)
.. + .......++++. |.++.-.+.+|+ ..| -.+...+...|+.|. .+.+ +
T Consensus 221 ------~~---~----~~~~~~~~l~~~-----~~~~~gvl~~Fl-YVG~Eva~gsfl~~y~~~~---~g~~---~---- 271 (422)
T COG0738 221 ------LG---A----SGSAGLSSLFQN-----KHLRLGVLAIFL-YVGAEVAIGSFLVSYLEEL---LGLN---E---- 271 (422)
T ss_pred ------cc---c----cccchHHHHHhC-----hHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhc---CCcc---H----
Confidence 00 0 011134455554 333333333433 333 223333444554431 2221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHH
Q 012601 275 YDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKV 354 (460)
Q Consensus 275 y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (460)
+.+..-+..+-+...+.-++..++.+|+...|.+.+..++-.+.++...++. + .+
T Consensus 272 -----~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~----g----------------~v 326 (422)
T COG0738 272 -----QQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG----G----------------VV 326 (422)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc----C----------------hH
Confidence 1111233334445566677777888899888887765444333333333333 1 22
Q ss_pred HHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccC
Q 012601 355 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (460)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~ 420 (460)
.+......|...++..+.-|++-.+.+|++. ..|- +++-++ .++-.++|.+.|.+.|..|.
T Consensus 327 -~~~~l~~ig~F~simfPTIfslal~~l~~~t-s~~s--~~l~ma-ivGGAiiP~l~G~i~d~~g~ 387 (422)
T COG0738 327 -ALYALFLIGLFNSIMFPTIFSLALKNLGEHT-SVGS--GLLVMA-IVGGAIIPPLQGVIADMFGI 387 (422)
T ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHhccCccc-cccc--eeeeeh-eecchHHHHHHHHHHHhhhh
Confidence 2223334666666666667777778887432 2222 344444 44557778888999888774
No 194
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.04 E-value=4.5e-05 Score=81.65 Aligned_cols=141 Identities=15% Similarity=0.063 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
|-...+++.+.+.+++.+++.|++|||+.+.++.+.+.++-+..++.. + +....+.-.+.
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----~----------------~~~l~~GR~l~ 152 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----S----------------WYQLIVGRILT 152 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHh
Confidence 445567788899999999999999999999999999998888777665 2 67778888889
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
|++.|...-+---+++|..|. +.+|...++.+++..++++++-. .+...+......+..+..+.+.+++-.+. .++
T Consensus 153 G~g~G~~~~~~piy~sEiap~--~~RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~ 228 (513)
T KOG0254|consen 153 GLGVGGASVLAPVYISEIAPA--HIRGTLVSLYQLFITIGILLGYC-INYGTSKVYAGWRIPLGLALIPAVILALG-MLF 228 (513)
T ss_pred ccchhhhhhcchhhHhhcCCh--hhhHHHHHHHHHHHHHHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHH-HHh
Confidence 999998777666788888887 45699999999999988888733 34443322111234677777778777776 788
Q ss_pred cCCCC
Q 012601 444 LPHLS 448 (460)
Q Consensus 444 vpe~~ 448 (460)
+||+-
T Consensus 229 ~pesp 233 (513)
T KOG0254|consen 229 LPESP 233 (513)
T ss_pred CCCCh
Confidence 89763
No 195
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.01 E-value=6.1e-05 Score=73.26 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 012601 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (460)
Q Consensus 227 mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~r 306 (460)
..+++|.+.+..++-..+|+||..-.+.++.+ -|+-+|.+ .+..--.+|. ++++.+-+.+.++|+
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~-rfGlS~~~-------------a~~i~s~vy~-Isav~spvfg~i~Dk 326 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQK-RFGLSAVS-------------AGNILSTVYG-ISAVLSPVFGAISDK 326 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hhCCChhh-------------ccchhhhhhh-hhhhhhhhHHHhHhh
Confidence 44577777777777778888887666666554 35544321 1111122333 355567778899999
Q ss_pred cCchhHHHHHHHHHHHHH-HHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCC
Q 012601 307 IGSRLVWAISNFIVFACM-ATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (460)
Q Consensus 307 iG~r~l~~~g~~~~ai~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~ 385 (460)
.|++..|+.+..+..+.- .+..|... +.+. .+.++|.++..+----|.+++..+|+
T Consensus 327 ~G~n~~wv~~a~~~tl~~H~~l~Ft~l-------------------sPy~---~m~~lGLsysllAcslWP~va~~vpE- 383 (459)
T KOG4686|consen 327 YGFNLWWVASACILTLLGHSGLFFTFL-------------------SPYT---SMTFLGLSYSLLACSLWPCVASLVPE- 383 (459)
T ss_pred hcceehhHHHHHHHHHHHhhhHHhhhc-------------------cHHH---HHHHHhhhHHHHHHHHhhhhhhhCCH-
Confidence 999999997655444322 22222211 1333 44556666664444345588888887
Q ss_pred CCCcccchhhhHHHHHHHHHHHhhccccceecccCcc-c-hhHhHHHHHHHHHHHHhhhccCCCCCC
Q 012601 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-I-PAFVLASLSALAGGVVATLKLPHLSSN 450 (460)
Q Consensus 386 ~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~-~-~~f~~~~v~~lia~~~~~~~vpe~~~~ 450 (460)
+..|++.|-..+-..++-.+++.+.|.+.+..|++. . .-|...+.+++++....+..-++..|+
T Consensus 384 -~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~kq~gn 449 (459)
T KOG4686|consen 384 -EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKKQSGN 449 (459)
T ss_pred -HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheeccccCC
Confidence 467999999999999999999999999998887542 1 125555555666655444444555544
No 196
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.99 E-value=0.00011 Score=79.50 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
+.+...+++.|+.-+-+++...|++..+. .+|..|+... . ..| +....++....+.+++++.+.++++
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~-~vf~~d~~~~-------~---~~~-~~s~~~~fg~~~g~~i~g~l~~~ir 377 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVV-NVFGSDPISI-------T---EIG-WISSPVGFGSCAGAVILGLLFSKIR 377 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCccc-------c---eee-hhhhhHHHHHHHHHHHHHHHHHHcc
Confidence 33434455666655556777677776655 3777666421 0 011 1222344445566778888888887
Q ss_pred chhHH-HHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCC
Q 012601 309 SRLVW-AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGG 387 (460)
Q Consensus 309 ~r~l~-~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~ 387 (460)
|-|.. ++|...+.++..+++.+.. + |. .....+..++.+|+++...... .+.++.-++ +
T Consensus 378 ~~Kw~li~~~~~~ta~~Gama~~~~---~------------n~-~~~i~~~~l~g~giG~~~~~~~---~~~ql~~p~-~ 437 (599)
T PF06609_consen 378 HIKWQLIFGSVLMTAFCGAMAAVRP---D------------NK-NAAIAFLVLAGFGIGGILVPAI---VIAQLIVPD-E 437 (599)
T ss_pred chhHHHHHHHHHHHHHHHHHHHccC---C------------Cc-chHHHHHHHHHHhHHHHHHHHH---HeeEeeeCc-h
Confidence 75544 4676666654444443321 1 11 1222344444456666544333 445554332 5
Q ss_pred CcccchhhhHHHHHHHHHHHhhcc
Q 012601 388 GQGLAIGVLNLAIVIPQMIVSLGA 411 (460)
Q Consensus 388 ~~G~~~Gi~n~~~~l~qil~~~~~ 411 (460)
..|+..|+.-+.-.++..+...++
T Consensus 438 ~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 438 DIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 677777777776666665544333
No 197
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.99 E-value=3.2e-05 Score=80.71 Aligned_cols=179 Identities=14% Similarity=0.165 Sum_probs=120.8
Q ss_pred cCCHHHHHHHHHHHH---HHHhhhhhhhhcccc-ccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012601 226 HLPPAMHVVLIVMAL---TWLSWFPFFLFDTDW-MGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIE 301 (460)
Q Consensus 226 ~mP~~l~~l~l~~f~---~w~g~~~~~~y~t~~-vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~ 301 (460)
+-|+.+..+..+++. ++.|.-+.+.|+.++ +++. . .+++....+.+ -.|+...-++.++.+
T Consensus 18 ~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-L------------g~~~~~A~~l~--~~y~slVY~t~i~GG 82 (498)
T COG3104 18 GQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-L------------GFDETHATGLF--SAYGSLVYLTPIIGG 82 (498)
T ss_pred CCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-C------------CcChHhhHHHH--HHHHHHHHHHHHHHH
Confidence 468888888888774 455544444443322 1111 0 11222222111 123333344588899
Q ss_pred HHhhhc-CchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhc
Q 012601 302 PMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (460)
Q Consensus 302 ~l~~ri-G~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~ 380 (460)
++.||+ |+|++.++|.++++++.+.++..... .....++..++.++|.|-+=+.+-++++|
T Consensus 83 ~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~------------------~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ 144 (498)
T COG3104 83 WLADRVLGTRRTIVLGAILMAIGHLVLAISSVS------------------GPGGLYIGLALIIVGTGLFKPNISSLLGE 144 (498)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhccccc------------------cccHHHHHHHHHHhccccccccHHHHHHH
Confidence 999996 99999999999999988766644200 13456667777889999999999999999
Q ss_pred cccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHH
Q 012601 381 LTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (460)
Q Consensus 381 ~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~ 439 (460)
.+|+.+.++-...+++.+.+.++-++.|++.+.+-+..|. ...|..+++-..++.+.
T Consensus 145 ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~--~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 145 LYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGW--HVGFGLAAVGMIIGLVI 201 (498)
T ss_pred hcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHH
Confidence 9987654455566888888889999999988887766663 34688888876666553
No 198
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.99 E-value=2.1e-05 Score=81.62 Aligned_cols=148 Identities=13% Similarity=0.202 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhh----cCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRW----IGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~r----iG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
.+.+..+..++...+.|.++|| +||||.|+ ++...++++++.++...... . . .......+.
T Consensus 40 i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~-~------------~-~~~~~~~~~ 105 (437)
T TIGR00792 40 LFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS-A------------T-GKLVYAYIT 105 (437)
T ss_pred HHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC-c------------c-hHHHHHHHH
Confidence 5566777888889999999997 68877666 67777777665554432110 0 0 012333444
Q ss_pred HHHhhhhhhhhcCcc-chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccC-----ccchhHhHHHHHH
Q 012601 360 FTLLGFPLAITYSVP-FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG-----GNIPAFVLASLSA 433 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp-~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~-----~~~~~f~~~~v~~ 433 (460)
..+++++++.. .+| .++.+|..+++ +++++..+..+....++.++++.+.+++....++ .....+.+.++++
T Consensus 106 ~~~~~~~~~~~-~~~~~al~~~~~~~~-~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~ 183 (437)
T TIGR00792 106 YILLGLFYSFV-NIPYWSLVPAITLDP-RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG 183 (437)
T ss_pred HHHHHHHHHhh-cccHhhCcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence 45678888854 455 46777877543 3467888999998889888887776666543321 1223567777777
Q ss_pred HHHHHHhhhccCCCC
Q 012601 434 LAGGVVATLKLPHLS 448 (460)
Q Consensus 434 lia~~~~~~~vpe~~ 448 (460)
++..+.+.+.+||.+
T Consensus 184 ~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 184 VVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHcCCEecC
Confidence 777666667777754
No 199
>PTZ00207 hypothetical protein; Provisional
Probab=97.98 E-value=5.1e-05 Score=82.23 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=91.5
Q ss_pred HHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 295 l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
+..++.|++.||+|+|+++.+|.++++++++.+++... . .+.+ +.+...+...+.|++.+......
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~---~--------~i~~---s~~~l~l~r~l~G~G~~~~~~~~ 141 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQ---E--------VIEG---SVVRLSVYNGLMTLGCMLFDLGA 141 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc---c--------cccC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999887776521 0 0000 25556667778888888777777
Q ss_pred chhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 375 ~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
...+.+.+|+ ++|+.+|+.+.+..++..+.+.+...+.. .+ ....|++-+++.++.++++..++
T Consensus 142 ~~~i~~~Fp~---~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~--~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 142 VVTVLSVFPS---NRGAVVAIMKTFTGLGSAILGSIQLAFFS-DN--TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHhChh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--HHHHHHHHHHHHHHHHHHHHhhe
Confidence 7788888874 35999999999999999765554444432 11 22356666777666666555554
No 200
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.97 E-value=7.8e-05 Score=77.68 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCc-h
Q 012601 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS-R 310 (460)
Q Consensus 232 ~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~-r 310 (460)
.++|...|+.|.+|-...-|.+.|+.++ ++-++ .+.| +.+..+.+..++.+.+.+++.||+|+ |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~g~s~-------------~~iG-l~~a~~~~~~~i~~~~~g~l~dr~g~~r 69 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGSWLVTLGSYMSKT-LHFSG-------------AEIG-WVYSSTGIAAILMPILVGIIADKWLSAQ 69 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH-------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 3567777777777666666667777652 22221 1333 35567888899999999999999965 6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccC------
Q 012601 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD------ 384 (460)
Q Consensus 311 ~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~------ 384 (460)
+++.++.++.+++.....+.. + .+..+++..+.|+.+++...+--++...+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~ 129 (418)
T TIGR00889 70 KVYAVCHFAGALLLFFAAQVT----T----------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVV 129 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCch
Confidence 677777777666555444332 1 33334455556776655444333332222110
Q ss_pred CCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 385 SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 385 ~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
...++.+.+| .++..+++++.|.+ .... ...+|.+.++..++..++ .+.+||+
T Consensus 130 ~~~~~~r~~G------~lG~~ig~~l~g~l-~~~~--~~~~f~~~~~~~~~~~~~-~~~~~e~ 182 (418)
T TIGR00889 130 TDFPPIRVMG------TIGFIAAMWAVSLL-DIEL--SNIQLYITAGSSALLGVF-ALTLPDI 182 (418)
T ss_pred hcCCCeeeeh------hHHHHHHHHHHHHh-cccc--hhHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 0012234444 35677777766655 2211 122577777777776665 4567876
No 201
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.94 E-value=5.7e-05 Score=77.90 Aligned_cols=133 Identities=19% Similarity=0.094 Sum_probs=93.2
Q ss_pred HHHHHhHHHHhhhc-----Cchh-HHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 294 GVSSFLIEPMCRWI-----GSRL-VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 294 ~l~s~i~~~l~~ri-----G~r~-l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
.+..++.++++||+ |||| ...++.++.++++..+++.... + +.+.+.++..+.++..
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~--~---------------~~~~l~~~~~~~~~~~ 108 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPH--A---------------ALWPLAGLAVLVAFLS 108 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCcc--c---------------hHHHHHHHHHHHHHHH
Confidence 46678889999999 8876 5558888888877766654310 0 1344444444566667
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecc-cCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF-GGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~-g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
+.....--+++.|+.|++ ++|++.++......+++++.+.+.+.+.+.. | ....|++.+++.+++.+. .+.+||
T Consensus 109 ~~~~~~~~al~~~~~~~~--~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g--w~~~f~i~a~~~l~~~l~-~~~~~e 183 (402)
T PRK11902 109 ASQDIVFDAYSTDVLHPE--ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG--WGNTYLLMAGLMLAGALT-TLWAPE 183 (402)
T ss_pred HHHHHHHHHHHHHhcChh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC--HHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 766666678999998874 4688899999999999999988777776543 3 345788877777665553 456776
Q ss_pred CC
Q 012601 447 LS 448 (460)
Q Consensus 447 ~~ 448 (460)
++
T Consensus 184 ~~ 185 (402)
T PRK11902 184 PE 185 (402)
T ss_pred Cc
Confidence 64
No 202
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.85 E-value=0.00019 Score=73.56 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCch----hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSR----LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r----~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (460)
.+.++.+...+.+.+.+++.||+||| +...++..+.+ ....... + +.+..++..
T Consensus 44 ~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~---~~~~~~~----~---------------~~~~l~i~~ 101 (382)
T PRK11128 44 LLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA---VAFWFGA----H---------------SFWLLFVAI 101 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH---HHHHHhc----c---------------cHHHHHHHH
Confidence 45567778888899999999999984 33222221111 1111111 1 145555566
Q ss_pred HHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 361 ~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
.+.|++.+.......+++.+..+ +++..+|..+....++..+.+.+.|.+.+..|.. ..|++.++..++..++
T Consensus 102 ~l~g~~~~~~~~~~~a~~~~~~~----~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~--~~f~~~~~~~~~~~~~- 174 (382)
T PRK11128 102 GLFNLFFSPLVPLTDALANTWQK----QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQ--AILWILTAGVASMLLG- 174 (382)
T ss_pred HHHHHHHcccccHHHHHHHHHHh----hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChh--HHHHHHHHHHHHHHHH-
Confidence 66787777666666667666532 3466778889999999999999988888877743 4677777665555443
Q ss_pred hhccCCC
Q 012601 441 TLKLPHL 447 (460)
Q Consensus 441 ~~~vpe~ 447 (460)
.+..||.
T Consensus 175 ~~~~~~~ 181 (382)
T PRK11128 175 QLLRPTI 181 (382)
T ss_pred HHccCCC
Confidence 3445654
No 203
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.85 E-value=0.00014 Score=76.23 Aligned_cols=133 Identities=8% Similarity=-0.035 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
.+....++.-++.+.+.||+|-|+++.++.+.-++..+++++.. +.....++-.++|++-
T Consensus 70 ~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--------------------Sl~~L~i~R~llGvaE 129 (511)
T TIGR00806 70 VLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--------------------SVWHMQLMEVFYSVTM 129 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 45556777889999999999999999999999888888777765 1566777888999999
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCcc-chhHhHHHHHHHHHHHHhhhccC
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-IPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~-~~~f~~~~v~~lia~~~~~~~vp 445 (460)
|... .-+..+...+|++ ++|+..|+.+.+..++.++++++.+.+ ...|... .....++-. +.+.+++.-+++|
T Consensus 130 A~~~-A~~syI~~WfP~k--ER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~-s~~~a~~~a~~LP 203 (511)
T TIGR00806 130 AARI-AYSSYIFSLVPPS--RYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLV-FMTFSVFLALFLK 203 (511)
T ss_pred HHHH-HHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 9888 8888999999974 568888999999999999999987773 3334221 112333333 3333333446677
No 204
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.82 E-value=5.1e-05 Score=83.38 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCc---------c----ccCC-------
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGG---------I----EHGI------- 346 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~---------~----~~~~------- 346 (460)
..|.+..++..++.+.+.||+|||+.+.+|.++++++.++.++.+...+ .|+.. . ..+.
T Consensus 75 s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~-~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 153 (633)
T TIGR00805 75 GSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSG-RYSYSTTVSSTGNLSSANSFLCMENLTQAL 153 (633)
T ss_pred ehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcC-CccccccccccccccccccccccCCCCCCc
Confidence 3567778888899999999999999999999999998887766542210 01000 0 0000
Q ss_pred -----------CC-cchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccc
Q 012601 347 -----------GA-NQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW 414 (460)
Q Consensus 347 -----------~~-~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l 414 (460)
.. +.......++.-.+.|++-+....+-.+++.|..|+ +.+|+++|+++....++..+++++.|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~--~~~~~~~~i~~~~~~iG~~lG~llgg~l 231 (633)
T TIGR00805 154 RPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS--KNSPLYIGILESIAVFGPAFGYLLGSFC 231 (633)
T ss_pred cccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc--cccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 00 000134455677889999999999999999999987 4679999999999999999998887776
Q ss_pred eecccC--------------c------cchhHhHHHHHHHHHHHHhhhccCCCCC
Q 012601 415 DALFGG--------------G------NIPAFVLASLSALAGGVVATLKLPHLSS 449 (460)
Q Consensus 415 ~~~~g~--------------~------~~~~f~~~~v~~lia~~~~~~~vpe~~~ 449 (460)
.+.... + .+..|++.+++.++.++. ++.+||+..
T Consensus 232 ~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~lp 285 (633)
T TIGR00805 232 LQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKALP 285 (633)
T ss_pred HhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCccccC
Confidence 543210 0 112377778777776654 355665543
No 205
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.80 E-value=0.00027 Score=72.45 Aligned_cols=157 Identities=12% Similarity=0.089 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchh
Q 012601 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRL 311 (460)
Q Consensus 232 ~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~ 311 (460)
+.+++..|.-.+++..+.-|.+.|..+ ++-++ ..+| +.+..+.+...+...+.++++||+|||+
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~--~g~s~-------------~~ig-~~~s~~~~~~~~~~~~~g~l~d~~~~~~ 70 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKG--IGLGE-------------EMIG-LLIGAALIARFAGGLFFAPLIKDANHII 70 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH-------------HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 334555555555555555556666654 22221 1222 2344567778888889999999999853
Q ss_pred H----HHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCC
Q 012601 312 V----WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGG 387 (460)
Q Consensus 312 l----~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~ 387 (460)
. ..++..++.+.+ ..+. + +.+..++...+.|..++....+..++..+.. +
T Consensus 71 ~~~~~~~~~~~l~~~~~--~~~~-----~---------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~----~ 124 (382)
T TIGR00902 71 IALRLLALASAIFAAAF--SAGA-----H---------------NAWLLFIAIGLFALFFSAGMPIGDALANTWQ----K 124 (382)
T ss_pred HHHHHHHHHHHHHHHHH--HHhh-----h---------------hHHHHHHHHHHHHHHHccchhHHHHHHHHHH----H
Confidence 3 223322222211 1111 1 1445555566678888776666666665442 3
Q ss_pred CcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHH
Q 012601 388 GQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLS 432 (460)
Q Consensus 388 ~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~ 432 (460)
++|+++|.......++.++.+...|.+.+..|.. ..|...++.
T Consensus 125 ~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~--~~f~~~~~~ 167 (382)
T TIGR00902 125 QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ--NILAILTAG 167 (382)
T ss_pred HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh--HHHHHHHHH
Confidence 4588899999999999999999989888877743 356655544
No 206
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00092 Score=70.63 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
..++.+-.++.+++.+++.||+|||+.+.++.++..++.+++.+.... + ...+.++.-.+.|+
T Consensus 66 vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~--~---------------~~e~li~GR~i~Gl 128 (485)
T KOG0569|consen 66 VSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA--P---------------SFEMLILGRLIVGL 128 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh--h---------------hHHHHHHHHHHHHH
Confidence 345777888899999999999999999998888877766666654432 1 25667777778888
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchh--HhHHHHHHHHHHHHhhhc
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPA--FVLASLSALAGGVVATLK 443 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~--f~~~~v~~lia~~~~~~~ 443 (460)
..+....+---.++|..|++ -+|..-....+++.++.+++.....+ +..|++..|. +.+..+.+++.. +.+.+
T Consensus 129 ~~gl~~~~~pmyl~E~sP~~--~RG~~g~~~~~~~~~g~ll~~~~~l~--~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~ 203 (485)
T KOG0569|consen 129 ACGLSTGLVPMYLTEISPKN--LRGALGTLLQIGVVIGILLGQVLGLP--SLLGTEDLWPYLLAFPLIPALLQL-ALLPF 203 (485)
T ss_pred HhHHHHHHHHHHHhhcChhh--hccHHHHHHHHHHHHHHHHHHHHccH--HhcCCCcchHHHHHHHHHHHHHHH-HHHhc
Confidence 88877776666889999985 45887788888888888888554322 3345544333 444444444443 35578
Q ss_pred cCCCCC
Q 012601 444 LPHLSS 449 (460)
Q Consensus 444 vpe~~~ 449 (460)
+||+-.
T Consensus 204 ~PESPk 209 (485)
T KOG0569|consen 204 LPESPK 209 (485)
T ss_pred CCCCcc
Confidence 999854
No 207
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.59 E-value=0.00032 Score=75.95 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
|-...+.+.+.+...+.++++|.+|||...++|.++..++++..+... + ....+...++.
T Consensus 82 w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~----~----------------~~~~iag~~l~ 141 (599)
T PF06609_consen 82 WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ----N----------------MNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC----c----------------HHHHHHHHHHH
Confidence 334456677777888899999999999999999999988887666554 2 44566677788
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhh-h
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT-L 442 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~-~ 442 (460)
|++.|..... +..++|..|.+ .++...++.......+..+.+.....+.. ..+.++.|.+..++..++.+... +
T Consensus 142 GvgaG~~~~~-~~~isEl~p~k--~R~~~~~~~~~~~i~~~~~~~~ia~~~~~--~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 142 GVGAGVQELA-ALAISELVPNK--WRGLGLAIASIPFIITTWISPLIAQLFAA--HSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHhhHHHHHH-HHHHHHhcccc--hhhhHhHHHHHHHHhhhcccHHHHHHhcc--CCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8887766544 44589999874 34444444443322222222222211111 22346788888888888776544 3
Q ss_pred ccCCC
Q 012601 443 KLPHL 447 (460)
Q Consensus 443 ~vpe~ 447 (460)
.-|.+
T Consensus 217 Y~PP~ 221 (599)
T PF06609_consen 217 YFPPP 221 (599)
T ss_pred hCCCc
Confidence 34544
No 208
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.57 E-value=0.00014 Score=75.89 Aligned_cols=149 Identities=17% Similarity=0.118 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhHHHHhh----hcCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEPMCR----WIGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~----riG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
.+++.-+..++...+.|.++| |+||||.|+ +|....++++.+++.... .+.+. . .......+.
T Consensus 42 i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p---~~~~~--------~-~~~~~~~~~ 109 (428)
T PF13347_consen 42 ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPP---AGLSF--------T-AKLVWLFVF 109 (428)
T ss_pred HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcccc---chhhh--------h-hHHHHHHHH
Confidence 344456666667778899999 799999988 688888877766554410 00000 0 012223455
Q ss_pred HHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCc-----cchhHhHHHHHHH
Q 012601 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG-----NIPAFVLASLSAL 434 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~-----~~~~f~~~~v~~l 434 (460)
..++.++|.....--.++++|..+++ +++..-.+.-+.+..++.++++.+.+.+++..|++ ......+.+++.+
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~-~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~ 188 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDP-DERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL 188 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccH-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence 55568999866444467888888764 35577778888889999988888888888766642 2334555566666
Q ss_pred HHHHHhhhccCC
Q 012601 435 AGGVVATLKLPH 446 (460)
Q Consensus 435 ia~~~~~~~vpe 446 (460)
++.+...+.+||
T Consensus 189 v~~~i~~~~~ke 200 (428)
T PF13347_consen 189 VFFLITFFFVKE 200 (428)
T ss_pred HHhhhhhheeee
Confidence 666666677888
No 209
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.54 E-value=0.00067 Score=69.52 Aligned_cols=148 Identities=18% Similarity=0.105 Sum_probs=85.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHhHHH-HhhhcCchhHHHHHHHH-HHHHHHHHHHhhhhccccccCccccCCCCcchhHHHH
Q 012601 280 REGAFG-LLLNSVVLGVSSFLIEP-MCRWIGSRLVWAISNFI-VFACMATTAIISVISVREYSGGIEHGIGANQAIKVAS 356 (460)
Q Consensus 280 ~~G~~~-l~~~si~~~l~s~i~~~-l~~riG~r~l~~~g~~~-~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (460)
.+|.+. +.+..+...+.+-+.++ ..||.||||.|++...+ .+++........... + + ..+ .
T Consensus 37 ~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~-~------------~--~~~-~ 100 (390)
T TIGR02718 37 ALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDV-A------------G--AGW-A 100 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcch-h------------h--HHH-H
Confidence 344443 23456666677777755 68889999999765433 333333333221100 0 0 112 2
Q ss_pred HHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHH
Q 012601 357 LVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG 436 (460)
Q Consensus 357 ~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia 436 (460)
+......++..++....--++..|..++ ++.+...++......++.++.+...+.+.+..|. ...|.+.+++.++.
T Consensus 101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~--~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw--~~~f~~~a~l~~~~ 176 (390)
T TIGR02718 101 VGLLACASLASATQDIATDGMAAEHFNG--RTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ--RPAFLLVACVPLAS 176 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHH
Confidence 2233334555555554433445555543 3456677778888888888888777777777664 34788888888877
Q ss_pred HHHhhhccCCC
Q 012601 437 GVVATLKLPHL 447 (460)
Q Consensus 437 ~~~~~~~vpe~ 447 (460)
.+...+..||.
T Consensus 177 ~~~~~~~~~~~ 187 (390)
T TIGR02718 177 LVCVLWLKDRA 187 (390)
T ss_pred HHHHHHcCCCC
Confidence 77665555553
No 210
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.48 E-value=4.6e-06 Score=87.09 Aligned_cols=141 Identities=14% Similarity=0.087 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (460)
....+...+.+++.+.+.||+|||+.+.++.+++.++.++..+.... + +.+...+.-.+.|++
T Consensus 53 ~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--~---------------~~~~~~~~R~~~G~~ 115 (451)
T PF00083_consen 53 SSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--N---------------NFWMLLIGRFLIGFG 115 (451)
T ss_pred HHHHhhhcccccccccccccccccccccccccccccccccccccccc--c---------------ccccccccccccccc
Confidence 34555677789999999999999999999988887766655544310 0 145566677789999
Q ss_pred hhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc-CccchhHhHHHHHHHHHHHHhhhccC
Q 012601 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-GGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 367 ~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g-~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
.|....+-..++.|..|++ .+|....+.+.+..++++++....-.+-+..+ ......+.+.++.+++..+ ..+++|
T Consensus 116 ~g~~~~~~~~~~~E~~~~~--~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~p 192 (451)
T PF00083_consen 116 IGGAYVVSPIYISEIAPPK--HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLP 192 (451)
T ss_pred ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 9988888889999999874 45888899999999998888775433312221 1123356677776665444 447789
Q ss_pred CC
Q 012601 446 HL 447 (460)
Q Consensus 446 e~ 447 (460)
|+
T Consensus 193 ES 194 (451)
T PF00083_consen 193 ES 194 (451)
T ss_pred cc
Confidence 88
No 211
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.45 E-value=0.0048 Score=65.78 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCc--hh-----HHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGS--RL-----VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~--r~-----l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
.++.+..++.+-+..++=.|..+ |. =+.+|.++.+++++.+.+......+ ++.+ +.+..+..
T Consensus 315 slNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~--~~~~---------s~~wl~~~ 383 (493)
T PRK15462 315 SINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM--YGHS---------SLPLMVLG 383 (493)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCc---------CHHHHHHH
Confidence 45666666665555555444422 21 1668888888888766654322111 0001 23445566
Q ss_pred HHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHH-HHHHHHHhhcccc
Q 012601 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAI-VIPQMIVSLGAGP 413 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~-~l~qil~~~~~g~ 413 (460)
..+.+++=-....+-.++++++.|+ |-+|.+||+..... .++|.+++.+.+.
T Consensus 384 ~~~~t~gEl~~sPvgls~~~~laP~--~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 384 LAVMGFAELFIDPVAMSQITRIEIP--GVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred HHHHHHHHHHHChHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888899999999999997 56799999997744 7888887765543
No 212
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.43 E-value=0.0026 Score=66.96 Aligned_cols=270 Identities=12% Similarity=0.083 Sum_probs=137.0
Q ss_pred hHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhee
Q 012601 57 PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTI 136 (460)
Q Consensus 57 p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl 136 (460)
+...||...+|+++|+++.++......+|.+++..++.. ... ++ . -.++.+.+++....++++++.+
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql--l~s-~g---W-------r~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL--LVT-LG---W-------ISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-cC---c-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998887764 111 10 0 1456677777777766666544
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCCchhh
Q 012601 137 YFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAV 216 (460)
Q Consensus 137 ~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (460)
+.|-++......++ ++. ++ ....+ .++..++... + ..+ + .+......
T Consensus 201 -~LP~~~~sl~f~~~--~~~---~~-------~~~~~-----------~~~~~~~~~~-~----~~~---~-~~~~~~~~ 247 (511)
T TIGR00806 201 -FLKRPKRSLFFNRL--EDV---RG-------ALPCE-----------LDQMVPGPGG-K----LED---Y-LGTCRDSF 247 (511)
T ss_pred -hCCCCchhhhhccc--ccc---cc-------ccccc-----------cccCCCCCcc-c----cch---h-hhhhhhHH
Confidence 56633322111110 000 00 00000 0000000000 0 000 0 00001123
Q ss_pred HHHHHHHhc---cCCHHHH-HHHHHHHHHHHhhhhhhhhccccccceeecC-CCCCCChhhhhHHHHHHHHHHHHHHHHH
Q 012601 217 LVNLLTSLR---HLPPAMH-VVLIVMALTWLSWFPFFLFDTDWMGREVYHG-DPKGNDHEVKFYDQGVREGAFGLLLNSV 291 (460)
Q Consensus 217 ~~~l~~s~~---~mP~~l~-~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~-~p~~~~~~~~~y~~gv~~G~~~l~~~si 291 (460)
++.+|+.++ +-|+-++ -+|. -++--|++-...|... .++. +|+. . .||-++.. +..+
T Consensus 248 ~~~l~~~~~~~y~n~~vl~WSlWw--a~a~~g~~qv~~Y~Q~-----LW~~v~~~~----~-~yNG~veA------~~tl 309 (511)
T TIGR00806 248 LVRMLSELVTIYRNPQLLLWSLWW--VFNSAGYYLITYYVHT-----LWGTLDESL----N-KYNGAVDA------ASTL 309 (511)
T ss_pred HHHHHHHHHHHhcCcchhhhhHHH--HHHhhHHHHHHHHHHH-----HHHHcCCCc----c-ccCCHHHH------HHHH
Confidence 444554332 1232222 2332 2222333333333332 3322 2321 1 16655543 2233
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
..++.++..+.+-.++ .+.-.+...++.+...+..++..... +.+...+...+++..+..+.
T Consensus 310 lga~~a~~ag~~~~~w--~~~~~l~l~v~s~~~~gll~~m~~t~----------------~Iw~~Y~~yvlf~~~y~fli 371 (511)
T TIGR00806 310 LGAITSFIAGFVNIRW--ARWSKLLIAVVSAIQAGLVFWMSQSH----------------DIWVLYVTYVLFRGIYQFLV 371 (511)
T ss_pred HHHHHHHHHHhhcCCc--hhhHHHHHHHHHHHHHHHhhhhhccc----------------chHHHHHHHHHHHHHHHHHH
Confidence 5566677777763333 22111222222222222222221111 27788888899999999999
Q ss_pred CccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhc
Q 012601 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLG 410 (460)
Q Consensus 372 ~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~ 410 (460)
++--+-+++.+.+ +..|...|+-+..-.+=|.+..++
T Consensus 372 tia~~~iA~~L~~--~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 372 PIATFQIASSLSK--ELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHHHHhcc--cceEEEEecHHHHHHHHHHheEEE
Confidence 8877777777654 577999999998888888776654
No 213
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.42 E-value=0.0029 Score=65.54 Aligned_cols=134 Identities=17% Similarity=0.140 Sum_probs=75.5
Q ss_pred HHHHHHHhHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhh
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (460)
...+.+++.+.+.||...-+..+ +......++-........... ..+..+..+..+|+.-...
T Consensus 313 ~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~----------------~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 313 AGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG----------------DSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC----------------ceEehhhhHHHHHHhhcCC
Confidence 56777899999999986644433 332222222111111111100 1234566677788887778
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCc--cchhHhHHHHHHHHHHHHhhhc
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG--NIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~--~~~~f~~~~v~~lia~~~~~~~ 443 (460)
..+-+.+-.|..=+..+ |+-.|++|..-.+=-++-....+...+..+.+ ..+.-+...+.++++++++.++
T Consensus 377 ~Pig~ElgvE~TyPv~E--~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~ 449 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAE--GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFF 449 (480)
T ss_pred CCcceeeeeeeccccCC--cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhh
Confidence 88888888877533223 56668888876555555556666665544411 1123555566666666665544
No 214
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.40 E-value=0.0014 Score=69.12 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=103.7
Q ss_pred HHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhh
Q 012601 290 SVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAI 369 (460)
Q Consensus 290 si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~ 369 (460)
++...+.+..+|-++||+|||..+....+...+.-..+.+. .+..+++..+.| ++++
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----------------------~~~~~~~~~l~g-~~~~ 128 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----------------------GYWFFLLLGLSG-GFSA 128 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----------------------HHHHhhhccccc-chhh
Confidence 44677889999999999999999887765543333222222 122333444344 5566
Q ss_pred hcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCC
Q 012601 370 TYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (460)
Q Consensus 370 ~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~ 449 (460)
+.+.-++.+++....+ .+-..+|+++.+.++.-.++|...+.+.+..|. ..+|.++.++.+++.+.....+||+.-
T Consensus 129 ~~s~~~a~vadis~~~--~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~--a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 129 IFSVGFAYVADISSEE--ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI--ALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred hhhhhhhheeeccchh--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHhhccccccC
Confidence 7888899999998764 456778999999999999999998888877553 358999999999999999999999987
Q ss_pred CCccC
Q 012601 450 NSFRS 454 (460)
Q Consensus 450 ~~~~~ 454 (460)
+.=|+
T Consensus 205 ~~~~~ 209 (463)
T KOG2816|consen 205 EKERS 209 (463)
T ss_pred ccccc
Confidence 76665
No 215
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.0026 Score=65.20 Aligned_cols=138 Identities=20% Similarity=0.233 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHH
Q 012601 235 LIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA 314 (460)
Q Consensus 235 ~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~ 314 (460)
..+.|..|+-|-+...+..+ .|+-++. +.+ +-.++-.++..+.-++.+.+.||+|-|++++
T Consensus 23 f~v~F~VW~l~s~l~~~i~~-----~~~LS~~-------------q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~ 83 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKS-----DFGLSEG-------------QKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTI 83 (417)
T ss_pred HHHHHHHHHHHHHHHhhhcc-----ccCCCHH-------------HHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence 44567778888877766662 3444321 111 1223345566677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchh
Q 012601 315 ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIG 394 (460)
Q Consensus 315 ~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~G 394 (460)
++.++..+-.+.+.+... + + +.+..+++-.++|++-| ...+-.+.+++.+|+ +++|..+|
T Consensus 84 ~s~~l~~IP~~~~~~a~~---~------------~--~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~--~~qG~AlG 143 (417)
T COG2223 84 LSMLLLLIPCLGLAFAVT---Y------------P--STWQLLVIGLLLGLAGA-SFAVGMPNASFFFPK--EKQGLALG 143 (417)
T ss_pred HHHHHHHHHHHHHHHHcc---C------------C--chHHHHHHHHHHhcccc-eehcccccccccCCh--hhhhHHHH
Confidence 999998887776666541 1 0 12344555556777666 345666789999998 56799998
Q ss_pred hh---HHHHHHHHHHHhhcc
Q 012601 395 VL---NLAIVIPQMIVSLGA 411 (460)
Q Consensus 395 i~---n~~~~l~qil~~~~~ 411 (460)
+. |+-..+.|++.|.+.
T Consensus 144 I~g~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 144 IAGAGNLGVAVAQLVAPLVA 163 (417)
T ss_pred HhccccccHHHHHHHHHHHH
Confidence 87 566667777776654
No 216
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.33 E-value=0.0024 Score=70.09 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=80.8
Q ss_pred CCCccchhHHHHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccc-----ccccccc-
Q 012601 30 RGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG-----SWHRWFP- 103 (460)
Q Consensus 30 ~~~~~~~i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~-----~~~~~~~- 103 (460)
+..+.+...+.++|-.+...+.-..+..-.+||-|.+.+++-..-.++...|..+|=++||++|++. |+. .-+
T Consensus 230 ~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~-~~~~ 308 (735)
T KOG3626|consen 230 KESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG-LSPI 308 (735)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc-cCCC
Confidence 3444446667788999999999999999999999999999999999999999999999999999862 220 000
Q ss_pred ccccchhhccccchhHHHHHHHHHHHHHhhheeEEeeccC
Q 012601 104 FLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVP 143 (460)
Q Consensus 104 ~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p 143 (460)
.....+.+-. +.|..=|++...++++..+. +++.|-..
T Consensus 309 ~it~~DPrWI-GAWWlGFLi~g~~~~~~a~p-~f~fPk~l 346 (735)
T KOG3626|consen 309 GITPTDPRWI-GAWWLGFLICGALLLFSAVP-LFFFPKEL 346 (735)
T ss_pred CCCCCCcchh-hHHHHHHHHHHHHHHHHHHH-HHhCcccC
Confidence 0111111222 46778899988888777665 55555443
No 217
>PRK09669 putative symporter YagG; Provisional
Probab=97.31 E-value=0.00064 Score=71.18 Aligned_cols=147 Identities=15% Similarity=0.063 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhh----cCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRW----IGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~r----iG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
.+.+..+..++...+.|.++|| +||||.|+ .+...++++..++...+.. +. . ...+...+.
T Consensus 50 i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~-----~~--------~-~~~~~~~~~ 115 (444)
T PRK09669 50 MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF-----GA--------T-GKIIYACVT 115 (444)
T ss_pred HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC-----Cc--------c-hHHHHHHHH
Confidence 5566677778888889999998 78877877 5666776665443333210 00 0 012233344
Q ss_pred HHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCcc-----chhHhHHHHHHH
Q 012601 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-----IPAFVLASLSAL 434 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~-----~~~f~~~~v~~l 434 (460)
..++++.+...+.--.++.+|..++. ++++...+.-.....++..+++....++....+... ...+.+.+++++
T Consensus 116 ~~l~~~~~t~~~ip~~al~~~~t~~~-~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~ 194 (444)
T PRK09669 116 YILLSLVYTAINVPYCAMPGAITNDP-RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGV 194 (444)
T ss_pred HHHHHHHHHhhcchHHHhHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 44567777754433335667776543 345666666666667777777665555554443211 113444444444
Q ss_pred HHHHHhhhccCC
Q 012601 435 AGGVVATLKLPH 446 (460)
Q Consensus 435 ia~~~~~~~vpe 446 (460)
+..+.+++..+|
T Consensus 195 v~~~~~~~~~~e 206 (444)
T PRK09669 195 VLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHhCCeEE
Confidence 444444444443
No 218
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.31 E-value=0.0006 Score=57.80 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=62.8
Q ss_pred HHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHH
Q 012601 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (460)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (460)
.+..++....+....+++.|..|+++|++++++.+....+|..++..++... .+. .+|+..|.+.
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~-------------~~~~~~~~~~ 123 (141)
T TIGR00880 59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL--AQF-------------LGWRAPFLFL 123 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHH--hcc-------------cchHHHHHHH
Confidence 4555666666778889999999999999999999999999999999887652 111 2577888887
Q ss_pred HHHHHHHhhheeEEeec
Q 012601 125 VVFLTLCALVTIYFADE 141 (460)
Q Consensus 125 ~i~~~i~~~itl~~v~E 141 (460)
.++.+++.+...+..||
T Consensus 124 ~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 124 AILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHHHHhhcCCC
Confidence 77766666665655665
No 219
>PRK11462 putative transporter; Provisional
Probab=97.31 E-value=0.0017 Score=68.71 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhh----cCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRW----IGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~r----iG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
.+++.-+.-++.-.++|.++|| +||||.|+ +|...+++++.+++..+.... + ....-..+.
T Consensus 50 i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~-------------~-~~~~y~~~~ 115 (460)
T PRK11462 50 MFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSM-------------N-GKMIYAAIT 115 (460)
T ss_pred HHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCc-------------c-hHHHHHHHH
Confidence 3444555566677778888886 69999998 576777776655443321100 0 001223344
Q ss_pred HHHhhhhhhhhcCccc-hhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc
Q 012601 360 FTLLGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp~-aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g 419 (460)
..++.+++...+ +|| +|.+|..++. +++.+..+.-.....++.++++....++++..|
T Consensus 116 ~~~~~~~~t~~~-ipy~al~~~lt~d~-~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 116 YTLLTLLYTVVN-IPYCALGGVITNDP-TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHHHHHHHHHh-ccHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445788888665 566 6777777664 567888888888888888888777666666555
No 220
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.30 E-value=0.00088 Score=70.90 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhh----hcCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEPMCR----WIGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~----riG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
.+++.-+..++...+.|.++| |+||||.|+ .|....++++.++.... + .++. ......++.
T Consensus 47 i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p----~---------~~~~-~~~~~~~~~ 112 (473)
T PRK10429 47 LFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH----L---------FEGT-AQYVFVCVT 112 (473)
T ss_pred HHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC----C---------CCcc-HHHHHHHHH
Confidence 455667777888888999999 569988777 57666666554433211 0 0000 012223344
Q ss_pred HHHhhhhhhhhcCccc-hhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCcc-----chhHhHHHHHH
Q 012601 360 FTLLGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-----IPAFVLASLSA 433 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp~-aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~-----~~~f~~~~v~~ 433 (460)
..+++++++..+ +|| ++++|..++. +++....+.-.....++.++++....++++..|+.+ .....+.+++.
T Consensus 113 ~~l~~~~~t~~~-ip~~al~~~lt~~~-~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~ 190 (473)
T PRK10429 113 YILWGMTYTIMD-IPFWSLVPTLTLDK-REREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF 190 (473)
T ss_pred HHHHHHHHHHHc-chHHhhhHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 455677877554 555 7778887543 334555555455555565665554444443333211 11233444444
Q ss_pred HHHHHHhhhccCCC
Q 012601 434 LAGGVVATLKLPHL 447 (460)
Q Consensus 434 lia~~~~~~~vpe~ 447 (460)
+++.+.+.+..||.
T Consensus 191 ~~~~~~~~~~~~e~ 204 (473)
T PRK10429 191 IVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHcCceec
Confidence 44444454556664
No 221
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.30 E-value=0.0028 Score=65.80 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC-ch
Q 012601 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG-SR 310 (460)
Q Consensus 232 ~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG-~r 310 (460)
.|++..+|+.|..+-.+.-|.+.|..+..|.+ .++|. .+.+..++.+++..+.+.+.||.+ +|
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~---------------~qIG~-l~a~~~~~~i~~~~~~g~~aDr~~~~~ 68 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLYLESRGFSG---------------TQIGI-LLAVGPLARIVSPPFWGAIADRFGSAK 68 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---------------HHHHH-HHHHHHHHHHHHHHHHHHHHhHhhhHH
Confidence 35677778887777777778888887654432 23443 355567778888899999999985 56
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcc
Q 012601 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQG 390 (460)
Q Consensus 311 ~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G 390 (460)
+++.+.+++.++.+....... + .+..+..+.++.+.+.++.++-=++.-++..+ .+
T Consensus 69 ~~l~~~~l~~~~~~~~~~~~~----~----------------f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~----~~ 124 (400)
T PF03825_consen 69 RILALLSLLSALALLLLAFSS----S----------------FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD----RG 124 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHccc----cc
Confidence 777777777776554444332 1 33444555556676666555544444444432 35
Q ss_pred cchhhhHHHHHHHHHHHhhcccc-ceecccCc-cchhHhHHHHHHHHHHHHhhhccCCCC
Q 012601 391 LAIGVLNLAIVIPQMIVSLGAGP-WDALFGGG-NIPAFVLASLSALAGGVVATLKLPHLS 448 (460)
Q Consensus 391 ~~~Gi~n~~~~l~qil~~~~~g~-l~~~~g~~-~~~~f~~~~v~~lia~~~~~~~vpe~~ 448 (460)
.+.|-.=..-+++=++++...+. +....+.+ ....+.++++.+++.+.+. +.+|++.
T Consensus 125 ~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~ 183 (400)
T PF03825_consen 125 KDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKTP 183 (400)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCCc
Confidence 55566666666666666544322 22222211 1234666666555544433 3456554
No 222
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0016 Score=68.95 Aligned_cols=135 Identities=16% Similarity=0.051 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
.+..-.++..++.+.+.||+|-|+++..+.++-+++-+++-..... ..+.+++.-.+.|++.
T Consensus 81 s~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------------------~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 81 SFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------------------GFYLLLVLRFLQGLGQ 142 (466)
T ss_pred HHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------------------cchhhHHHHHHhHHHH
Confidence 3455577788999999999999999999888777655544443311 1345677788999999
Q ss_pred hhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceec-ccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL-FGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~-~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
++..+.-..+.++..|.. ++++..+++.+...++.++.-.+.|.+.+. .|-. .+|.+.|+++++-.++..++.
T Consensus 143 g~~~pa~~~i~~~W~P~~--Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~--sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPN--ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWP--SIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred hHHHhhhhceeeeECCHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCc--hHHHHHHHHHHHHHHHHHHHh
Confidence 999999889999999985 459999999999999999998888888877 6643 479999998888777654444
No 223
>PTZ00207 hypothetical protein; Provisional
Probab=97.22 E-value=0.0087 Score=65.09 Aligned_cols=83 Identities=8% Similarity=0.047 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcc-----ccceec----ccCc----
Q 012601 355 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA-----GPWDAL----FGGG---- 421 (460)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~-----g~l~~~----~g~~---- 421 (460)
...+...+.|+++|....+-.+.++|.+ |+|.|.+.-+..++..+.+.++ |.+.|. .|..
T Consensus 454 ~L~~~~~lvg~~~G~~~~~~~~i~selF-------gk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G 526 (591)
T PTZ00207 454 ALPLPYFIAAFANGFMAATIALVTRTIF-------AKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTE 526 (591)
T ss_pred HhHHHHHHHHHHhhHhHHHHHHHHHHHh-------ccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCC
Confidence 4566677778888877777777888888 4577777777777777776654 444432 1110
Q ss_pred ---cchhHhHHHHHHHHHHHHhhhcc
Q 012601 422 ---NIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 422 ---~~~~f~~~~v~~lia~~~~~~~v 444 (460)
....|.+-+.+++++++......
T Consensus 527 ~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 527 RVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred ceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 12347777777888887765443
No 224
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.0053 Score=65.38 Aligned_cols=142 Identities=18% Similarity=0.072 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
-.+|.+..+++-++.+.+.||+...+.+....+..++-.+++..++ +....+++-.+.|+
T Consensus 87 ~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~--------------------s~~~~ialr~llGl 146 (495)
T KOG2533|consen 87 DTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH--------------------SFPGLIALRFLLGL 146 (495)
T ss_pred HHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHH
Confidence 3456667788888999999999966665554444333222333332 25667777888899
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccC----ccchhHhHHHHHHHHHHHHhh
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG----GNIPAFVLASLSALAGGVVAT 441 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~----~~~~~f~~~~v~~lia~~~~~ 441 (460)
.-++....--++++..+.. +++|+-+|+++++..++|++++++...+.+..|. +..+.|++-|++++..++++.
T Consensus 147 ~es~~wP~~~~~lg~wy~~--~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGK--SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HhcccchHHHHHHHhhcCh--hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 8887766666778888876 4579999999999999999999988776542221 135689999999999999888
Q ss_pred hccCCCCC
Q 012601 442 LKLPHLSS 449 (460)
Q Consensus 442 ~~vpe~~~ 449 (460)
+++|+.-.
T Consensus 225 ~~lp~~P~ 232 (495)
T KOG2533|consen 225 FFLPDNPS 232 (495)
T ss_pred EEecCChh
Confidence 88886544
No 225
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0073 Score=61.04 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=93.1
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
...+.+...+++.||+|.++....++++.+++.+. .+. ......+....+.|.+.|+.+
T Consensus 59 ~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i----R~~-----------------~~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 59 AFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI----RSL-----------------GGLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred HHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH----Hhc-----------------ccHHHHHHHHHHHHhhHHHHH
Confidence 34556888999999999999999988777654432 211 014567777788999999999
Q ss_pred CccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHH
Q 012601 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (460)
Q Consensus 372 ~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~ 439 (460)
.+-=++|.+.+|. +.|..+|+++.+..+++.+++....++.+..++ -...+.+=++.++++.+.
T Consensus 118 VLLPslIK~~Fpk---~~~~mtglYs~sl~~~aaLaa~lavpla~~~~g-W~~aL~~WAl~allAl~~ 181 (395)
T COG2807 118 VLLPSLIKRDFPK---RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGG-WRGALGFWALLALLALLI 181 (395)
T ss_pred HhhhHHHHhhccc---chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhcc-HHHHHHHHHHHHHHHHHH
Confidence 8888889999984 579999999999999999999988888766532 234566666667766654
No 226
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.0081 Score=61.48 Aligned_cols=106 Identities=8% Similarity=-0.068 Sum_probs=81.3
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
...+.+++.+++.||+|.|+-.++|..+++++..+..=.... + +....++...+.|.|.+.+.
T Consensus 60 gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-~----------------~y~~FL~~lFila~Gi~~Le 122 (422)
T COG0738 60 GYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-K----------------SYGFFLVALFILASGIGLLE 122 (422)
T ss_pred HHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh-h----------------hHHHHHHHHHHHHhhhHHHH
Confidence 466779999999999999999999999999877654422211 0 24455555567888888888
Q ss_pred CccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccccee
Q 012601 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (460)
Q Consensus 372 ~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~ 416 (460)
+---++++..-|++ ....-|.+...++.+++++.|++.+.++.
T Consensus 123 taaNp~v~~lg~~~--~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 123 TAANPYVTLLGKPE--SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hccchHHHHhCCch--hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 87777888888763 44667899999999999999998777654
No 227
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.92 E-value=0.0047 Score=55.53 Aligned_cols=105 Identities=12% Similarity=0.169 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHH
Q 012601 282 GAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (460)
Q Consensus 282 G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (460)
|..++.+.-.+..+++++.|.+++++|.|..+++|.+.+++-.+. .+-. +.+..+...+
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~--------------------~~~~l~~~s~ 97 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYP--------------------NSYTLYPASA 97 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhh--------------------hHHHHHHHHH
Confidence 455666655567788899999999999999999998887643222 2111 2466677777
Q ss_pred HhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhh
Q 012601 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (460)
Q Consensus 362 ~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~ 409 (460)
+.|++-+.+-..--..+.++-++ +.+++..|+.-.....++++..+
T Consensus 98 l~G~~~a~lW~aqg~ylt~~s~~--~~~~~~~~ifw~i~~~s~i~G~~ 143 (156)
T PF05978_consen 98 LLGFGAALLWTAQGTYLTSYSTE--ETIGRNTGIFWAIFQSSLIFGNL 143 (156)
T ss_pred HHhhhhHHhhHhhhHHHHHcCCH--HHHhhHHHHHHHHHHHHHHHHHH
Confidence 89999986544444555655443 34566667666555555555544
No 228
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.0028 Score=67.86 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHH-HHHHHHHhhh
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVA-SLVVFTLLGF 365 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Gi 365 (460)
.+...+..+.+.+...+.||+|.|++-++|.++.++++++..+... .+. .+..-.+.|+
T Consensus 88 sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~--------------------i~~l~lt~gvi~G~ 147 (509)
T KOG2504|consen 88 SLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS--------------------LWQLYLTFGVIGGL 147 (509)
T ss_pred HHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh--------------------HHHHHHHHHHHhhc
Confidence 3444455666777788899999999999999999999988887762 333 3333345777
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccC
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vp 445 (460)
|.+..+.--..++++|++. +++.+.|+..+-..++.++-|.+.-.+++..|..+ .+...+.+.+-.+++....-|
T Consensus 148 G~~~~~~paiviv~~YF~k---kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~--~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 148 GLGLIYLPAVVILGTYFEK---KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG--ALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred cchhhhcchhhhhhhHhHH---HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 7776555555677888864 56888899999999988888887777777777543 444444444444444444444
No 229
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.0077 Score=63.31 Aligned_cols=143 Identities=16% Similarity=0.228 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhHHHHhhh----cCchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHH
Q 012601 286 LLLNSVVLGVSSFLIEPMCRW----IGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~r----iG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (460)
+++-=+.-++.--++|.++|| +||+|.|+ .|.+.+++...+++....+.. - ....-+.+..
T Consensus 54 flv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~------~--------~k~~ya~vtY 119 (467)
T COG2211 54 FLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM------T--------GKLIYALVTY 119 (467)
T ss_pred HHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCccc------C--------cchHHHHHHH
Confidence 334444555566667777775 69999988 566777765554443331110 0 0134455566
Q ss_pred HHhhhhhhhhcCccc-hhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCcc--chhHhHHHHHHHH--
Q 012601 361 TLLGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN--IPAFVLASLSALA-- 435 (460)
Q Consensus 361 ~~~Gi~~a~~~~vp~-aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~--~~~f~~~~v~~li-- 435 (460)
.++++++... -+|| ||.++..++. +++-.-.+.=..+..++++++..+.+++++..|+++ ...+..+.+++++
T Consensus 120 ~l~~l~YT~v-niPy~al~~~iT~d~-~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 120 MLLGLGYTLV-NIPYGALGPEITQDP-QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHhe-eCchhhcchhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 6788888844 5666 5667777654 445666677788888999999999999988777653 1224444444444
Q ss_pred -HHHHhhhcc
Q 012601 436 -GGVVATLKL 444 (460)
Q Consensus 436 -a~~~~~~~v 444 (460)
+.+++++-+
T Consensus 198 i~~l~~~~~v 207 (467)
T COG2211 198 ILLLFCFFNV 207 (467)
T ss_pred HHHHHHHHHh
Confidence 444444434
No 230
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.78 E-value=0.019 Score=58.10 Aligned_cols=137 Identities=14% Similarity=0.104 Sum_probs=83.9
Q ss_pred HHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhh
Q 012601 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (460)
Q Consensus 291 i~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (460)
+++++++.+.+.+.||+|||+..++-.++.+++.+ ...+ + +....++.-.+-|++.+.+
T Consensus 80 ~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl----~k~~--~---------------~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 80 ASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL----TKHS--S---------------NYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----HHhc--c---------------ccHHHHHHHHHHHHHHHHH
Confidence 36777888999999999999998776655555443 3322 1 2456666777889998887
Q ss_pred cCccchhhhccccCCCCCcccc--hhhhHHHHHHHHHHHhhccccc----eecccCccchhHhHHHHHHHHHHHHhhhcc
Q 012601 371 YSVPFAITAELTADSGGGQGLA--IGVLNLAIVIPQMIVSLGAGPW----DALFGGGNIPAFVLASLSALAGGVVATLKL 444 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~--~Gi~n~~~~l~qil~~~~~g~l----~~~~g~~~~~~f~~~~v~~lia~~~~~~~v 444 (460)
.++.=+-+...|.+ |+...+ -..+..+..+.|-++.+..|.+ .+..|.+...+|..+.++..++++++...=
T Consensus 139 fS~FEsW~V~Eh~~--~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 139 FSAFESWMVHEHNK--RGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 77655544444433 222111 1122222223444444444433 344444345689999999999988876666
Q ss_pred CCCCCC
Q 012601 445 PHLSSN 450 (460)
Q Consensus 445 pe~~~~ 450 (460)
+|-.|.
T Consensus 217 ~ENyg~ 222 (354)
T PF05631_consen 217 PENYGD 222 (354)
T ss_pred cccCCC
Confidence 787775
No 231
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.70 E-value=0.0056 Score=63.52 Aligned_cols=178 Identities=14% Similarity=0.089 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 229 ~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
++++++....|+-++.|-.++-|++.|++|+. +- .+..+|. -+.+.++.+.+...+.|.+.||+|
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~-GL-------------s~~~iG~-i~s~~~~~~l~~qp~~G~i~Dklg 71 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVA-GL-------------SGTEIGI-IFSAGSLFALLAQPVYGFISDKLG 71 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH-HHHHHHHHHHHTHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CC-------------CHHHHHH-HHHHHHHHHHHHHHhHHHhcchhh
Confidence 34555444444444444445556688887521 11 1223442 334466677777888899999999
Q ss_pred chhHHH--HHHHHHHHHHHHH-HHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCC
Q 012601 309 SRLVWA--ISNFIVFACMATT-AIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (460)
Q Consensus 309 ~r~l~~--~g~~~~ai~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~ 385 (460)
.||-.+ ++.+....+-... .+.+....| ....+++....+|+.+.+...+-=+++-++
T Consensus 72 ~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n---------------~~lg~iig~i~l~~~f~~~~~~~Ea~~er~---- 132 (412)
T PF01306_consen 72 LKKHLLWFIAILLLLFGPFFIYVFGPLLQSN---------------FWLGAIIGGIYLGLVFNAGVPLSEAYAERV---- 132 (412)
T ss_dssp TCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT----------------HHHHHHTTTTTTTTTTTHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHcccchHHHHHHHHH----
Confidence 766433 3322211111111 111110001 012222222334555555444421222111
Q ss_pred CCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhc
Q 012601 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (460)
Q Consensus 386 ~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~ 443 (460)
.|..|.+.|=.=..-+++-.+++.+.|.+++... ...|+++++++++..++..+.
T Consensus 133 sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p---~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 133 SRRNGFEYGRARMWGSIGFAIASLLAGILFNINP---NIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc---cHHHHHHHHHHHHHHHHHHHc
Confidence 2566888888999999999999999999886532 247888888777666654444
No 232
>PRK09848 glucuronide transporter; Provisional
Probab=96.69 E-value=0.011 Score=61.96 Aligned_cols=100 Identities=9% Similarity=0.044 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhc----CchhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHH
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWI----GSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~ri----G~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (460)
.+.+..+..++...+.|+++||. ||||.|+ .+.+..+++...+..... . .+.+ ......++.
T Consensus 49 ~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~-~~~~~~~~~ 115 (448)
T PRK09848 49 MLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPT---D---------WSHS-SKVVYAYLT 115 (448)
T ss_pred HHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcC---C---------CCcc-hHHHHHHHH
Confidence 55567778888899999999986 8888875 554444433332221110 0 0000 012223444
Q ss_pred HHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHH
Q 012601 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNL 398 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~ 398 (460)
..+.+++++..+.--.++..+..++. +++....+.-..
T Consensus 116 ~~~~~~~~~~~~~~~~al~~~~~~~~-~~r~~~~~~r~~ 153 (448)
T PRK09848 116 YMGLGLCYSLVNIPYGSLATAMTQQP-QSRARLGAARGI 153 (448)
T ss_pred HHHHHHHHHHhcccHhhhhhhhcCCH-HHHHHHHHHHHH
Confidence 55678888866543344555555543 233444444433
No 233
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.0045 Score=64.25 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=88.8
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
-.+..-+..|++.||+|||++|...++++.+|-++.++-... +++....+.+.+.-.++|+|.|-=+
T Consensus 96 Gti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~-------------~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 96 GTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT-------------TSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC-------------CCCcchhhHHHHHHHHhhccccCCC
Confidence 345567888999999999999999999998877644432210 1111112334444468999999888
Q ss_pred CccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccc----eecccCc---------cchhHhHHHHHHHHHHH
Q 012601 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW----DALFGGG---------NIPAFVLASLSALAGGV 438 (460)
Q Consensus 372 ~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l----~~~~g~~---------~~~~f~~~~v~~lia~~ 438 (460)
...-++.||+... +.+|+-++..-.+.-.+++..+.+.-.+ ....+.. .+..|.++.+-+++...
T Consensus 163 PlSAtI~SE~an~--~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly 240 (538)
T KOG0252|consen 163 PLSATIMSESANK--KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY 240 (538)
T ss_pred cchHHHhhhhhhh--ccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999876 4568777777777666665544332211 1222221 12236666665554333
Q ss_pred HhhhccCCCCC
Q 012601 439 VATLKLPHLSS 449 (460)
Q Consensus 439 ~~~~~vpe~~~ 449 (460)
.+..+|||+-
T Consensus 241 -~Rl~M~Et~~ 250 (538)
T KOG0252|consen 241 -FRLKMPETAR 250 (538)
T ss_pred -hhhcCCcchh
Confidence 3456899863
No 234
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.38 E-value=0.00082 Score=72.46 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=2.9
Q ss_pred cchhHHHHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccc-----ccccccc---cc
Q 012601 34 TRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG-----SWHRWFP---FL 105 (460)
Q Consensus 34 ~~~i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~-----~~~~~~~---~~ 105 (460)
.....+.++|-++..++....+.--.+||-|.+++++-..-.|+...+..+|-.+||++|+.. ||.+.-+ ..
T Consensus 138 ~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i 217 (539)
T PF03137_consen 138 SGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGI 217 (539)
T ss_dssp --------------SSS---------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCC
Confidence 334577788999999999999999999999999999999999999999999999999999752 2221100 00
Q ss_pred ccchhhccccchhHHHHHHHHHHHHHhhheeEEeecc
Q 012601 106 TSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEV 142 (460)
Q Consensus 106 ~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~ 142 (460)
...+.+-. +.|-.-|++.++.+++..+ .++..|.+
T Consensus 218 ~p~dp~Wv-GAWWLGfli~g~~~~l~ai-pl~~FPk~ 252 (539)
T PF03137_consen 218 TPSDPRWV-GAWWLGFLICGILLFLSAI-PLFFFPKK 252 (539)
T ss_dssp -------------------------------------
T ss_pred CCCCccHH-HHHHHHHHHHHHHHHHHHH-HHHcCCcc
Confidence 00011111 3566678887777765554 45566655
No 235
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.37 E-value=0.24 Score=51.38 Aligned_cols=280 Identities=9% Similarity=0.090 Sum_probs=140.1
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHh
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~ 132 (460)
++.....+||=-.+|+++=+|+.++.....-+|..+|.++|=. +-.+ .+.+++.+..++.....+++
T Consensus 109 a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQl--lvs~-----------~~~sy~~L~~isl~~~~~a~ 175 (412)
T PF01770_consen 109 AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQL--LVSF-----------GGVSYFQLNYISLASVSLAL 175 (412)
T ss_pred HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-----------cCCCHHHHHHHHHHHHHHHH
Confidence 3344677899999999999999998888888888888877743 1110 02467888888888776666
Q ss_pred hheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCCCCC
Q 012601 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (460)
Q Consensus 133 ~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (460)
++. ++.|-++....-.++.++... .++.+.+. .+...++.++.++ .+ +..+..
T Consensus 176 ~~~-~fLP~~~~S~~f~r~~~~~~~---------~~~~~~~~----------~~~~~~~~~~~~~----~~---~~~~~~ 228 (412)
T PF01770_consen 176 LIA-LFLPMPKRSLFFHRKPPAEQD---------ANESESDK----------MNESPESSSSTEK----SP---STESSS 228 (412)
T ss_pred HHH-HHcCCCCcccceeccCccccc---------cccccccc----------ccccccccccccc----Cc---ccccch
Confidence 654 456665533211111000000 00000000 0000000000000 00 000011
Q ss_pred chhhHHHHHHHhc---cCCHHHHH-HHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHH
Q 012601 213 PGAVLVNLLTSLR---HLPPAMHV-VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL 288 (460)
Q Consensus 213 ~~~~~~~l~~s~~---~mP~~l~~-l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~ 288 (460)
....++++|+.++ +-|+-++. +|.+ ++--|++-+..|...-..+ + +++. +...|+-++.. .
T Consensus 229 ~~~~l~~l~~~~~~~y~~~~ll~WSlWWa--~atcgy~qv~nYvQ~LW~~-v---~~~~---~~~vYNG~VeA------~ 293 (412)
T PF01770_consen 229 RKSVLRLLWKDFKSCYSNPRLLLWSLWWA--FATCGYYQVINYVQSLWDT-V---PPSD---NESVYNGAVEA------A 293 (412)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHH--HHHhHHHHHHHHHHHHHHh-c---CCCC---CCcccchHHHH------H
Confidence 2344566665544 22333222 2222 2223444444444443332 2 1111 13345544432 2
Q ss_pred HHHHHHHHHHhHHHHhhhcCc---hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhh
Q 012601 289 NSVVLGVSSFLIEPMCRWIGS---RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (460)
Q Consensus 289 ~si~~~l~s~i~~~l~~riG~---r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (460)
..+.+++.++..+.+-.++.+ ..+..++ ++.+.+++.+.... +.+...+...+++.
T Consensus 294 ~tllgA~~al~~g~v~~~w~~~~~l~l~~~S-~l~a~~L~lm~~t~--------------------~Iwv~Y~~yIif~~ 352 (412)
T PF01770_consen 294 STLLGAIAALLAGYVKVNWDRWGELALGVFS-LLQAGLLFLMSFTG--------------------NIWVCYAGYIIFRS 352 (412)
T ss_pred HHHHHHHHHHHHhHhhcchHHHHHHHHHHHH-HHHHHHHHHHHHhh--------------------HHHHHHHHHHHHHH
Confidence 233455566666666444444 3333333 33344444444333 26777777777888
Q ss_pred hhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhc
Q 012601 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLG 410 (460)
Q Consensus 366 ~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~ 410 (460)
.+..+.++-..=++.-... +..|...|+-+....+-|.+..++
T Consensus 353 ~y~fliTiA~~qIA~~l~~--e~yaLVFGiNtf~Al~LQtilT~i 395 (412)
T PF01770_consen 353 LYMFLITIASFQIAKNLSE--ERYALVFGINTFVALVLQTILTLI 395 (412)
T ss_pred HHHHHHHHHHHHHHHhccc--cceeeeeeeHHHHHHHHHHheEEE
Confidence 8887777755555555543 578999998888777777666543
No 236
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.22 E-value=0.037 Score=58.69 Aligned_cols=90 Identities=13% Similarity=-0.006 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHH
Q 012601 356 SLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALA 435 (460)
Q Consensus 356 ~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~li 435 (460)
..+++.+.+++.+.....-=+++.|..+++++..+......-.+..++.++++.+.|.+.+..+. ...|.+.+++.++
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~--~~~f~~~a~l~ll 200 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLT--RILFLITAALLLL 200 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHH
Confidence 33456678888888877878899999883322222223333333457888888888888776663 3478777777776
Q ss_pred HHHHhhhccCCCC
Q 012601 436 GGVVATLKLPHLS 448 (460)
Q Consensus 436 a~~~~~~~vpe~~ 448 (460)
. ++..+++||.+
T Consensus 201 ~-~~~~~~~~E~~ 212 (468)
T TIGR00788 201 Q-LFVSNLSKERR 212 (468)
T ss_pred H-HHHHHhccccc
Confidence 6 44557788864
No 237
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.33 E-value=0.067 Score=56.17 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=83.4
Q ss_pred HHhHHHHhhhc---C-chhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 297 SFLIEPMCRWI---G-SRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 297 s~i~~~l~~ri---G-~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
-.+.+.++|.+ | |||.|+ +|.++.+++.+..+...... + +...+.+++.+..++.+...
T Consensus 41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-~---------------s~~~~~~~l~la~~g~a~~D 104 (433)
T PF03092_consen 41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-S---------------SAAIAVVLLFLASFGYAFAD 104 (433)
T ss_pred hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-c---------------hhhhHHHHHHHHHHHHHHHH
Confidence 34567778876 3 667776 56555544444444333110 0 12233344444566666666
Q ss_pred CccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 372 ~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
.+-=+++.|...++.+..|.-.+....+..++.+++..+.|++.+..+. ...|.+++.+.++..+.+.++.+|
T Consensus 105 V~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~--~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 105 VAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP--QGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC--eEEehHHHHHHHHHHHHHHHhhhh
Confidence 6666788888765444456666666777778888888888888877664 347888888888887777677776
No 238
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=95.12 E-value=0.29 Score=52.15 Aligned_cols=147 Identities=14% Similarity=0.053 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHH-HHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFA-CMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
...+..++.++.+.++|.++|+-|+||.+.....+.++ +..++.++. .+ + ++...+++.+.
T Consensus 75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~---~~------------~---~~~~~~l~iia 136 (477)
T PF11700_consen 75 ANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS---PG------------Q---WWLALVLFIIA 136 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC---cc------------h---HHHHHHHHHHH
Confidence 34455556666677888899999998888865555443 233333332 11 1 34444444444
Q ss_pred hhhhhhhcCccchhhhccccCCCC------------------------CcccchhhhHHHHHHHHHHHhhccccceeccc
Q 012601 364 GFPLAITYSVPFAITAELTADSGG------------------------GQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~------------------------~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g 419 (460)
-+++...+..=.+++.+..+++.+ .+|+..|.-...-+++-++.-++.-.++...+
T Consensus 137 ~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~ 216 (477)
T PF11700_consen 137 NVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPG 216 (477)
T ss_pred HHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455554444444667766654311 01444444333333333332221111111111
Q ss_pred C------ccchhHhHHHHHHHHHHHHhhhccCCCCC
Q 012601 420 G------GNIPAFVLASLSALAGGVVATLKLPHLSS 449 (460)
Q Consensus 420 ~------~~~~~f~~~~v~~lia~~~~~~~vpe~~~ 449 (460)
. ..+..+.+.|+.-++-++-..+++||.++
T Consensus 217 ~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 217 STASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 1 12445788888777777766778998876
No 239
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.66 E-value=0.29 Score=50.49 Aligned_cols=116 Identities=9% Similarity=0.100 Sum_probs=81.9
Q ss_pred HHhHHHHhhhcC-----chhHHH-HHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhh
Q 012601 297 SFLIEPMCRWIG-----SRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (460)
Q Consensus 297 s~i~~~l~~riG-----~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (460)
-...|..+|+-+ ||..|+ .|...++.+...+.+........ ....-.+.+.....+.+.+.++|++..+.
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~----~~~~~~~~~~g~~~a~l~F~l~G~G~~~s 106 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES----GQQSSGPFWLGLALAALAFLLYGLGVHAS 106 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc----ccccccccHHHHHHHHHHHHHHHhhHhHh
Confidence 445677889988 899998 67777776665554433221110 00001112233456677778899999999
Q ss_pred cCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecc
Q 012601 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (460)
Q Consensus 371 ~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~ 418 (460)
.+--.+|++|..|++ ++++..++.-++.-++-++.+.+.|.+++-.
T Consensus 107 ~T~~lALl~D~~~e~--~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 107 GTSFLALLADLAPEE--RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred HHHHHHHHHhcCCHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999984 5688889999999999999999999877643
No 240
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=93.73 E-value=0.12 Score=52.62 Aligned_cols=128 Identities=20% Similarity=0.099 Sum_probs=82.9
Q ss_pred HHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcC
Q 012601 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (460)
Q Consensus 293 ~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (460)
-.+.+..-+.+.|++|||+.+.+......+ ..++.-. .|| ...+.++-++.|++.|. .+
T Consensus 126 mllga~~w~l~~d~~grr~~f~~T~l~t~v----~~~is~~-------------spn---f~~L~~f~~l~~~g~gg-~p 184 (528)
T KOG0253|consen 126 MLVGAMVWGLSADTIGRRKGFNLTFLVTGV----FGVISGA-------------SPN---FASLCVFRALWGFGVGG-LP 184 (528)
T ss_pred hhhhhhhhheehhhhhcchhhhhhHHHHHH----HHHhhcC-------------CCC---eehhhHHHHHHhccCCC-cc
Confidence 345677888899999999988776544332 2333211 112 45566777888888887 67
Q ss_pred ccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCC
Q 012601 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (460)
Q Consensus 373 vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~ 447 (460)
+.-++=.|..|..+| +. .-++..+-.++|+...++.=.++..+|- .+...+.++-..+.+++ ++++||+
T Consensus 185 v~~~~yle~lp~~~r--~~-~~V~~~~waig~v~ea~law~vm~~~gw--r~~l~~~~~pl~~~a~f-~~w~~ES 253 (528)
T KOG0253|consen 185 VDSAIYLEFLPSSHR--WL-LTVMSFFWAIGQVFEALLAWGVMSNFGW--RYLLFTSSTPLMFAARF-LVWVYES 253 (528)
T ss_pred HhHHHHHHhccCcCC--Cc-chhHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHhHHHHHHHH-HhhcccC
Confidence 777788888987533 43 3344466677888877765444555553 34555556666666665 3788886
No 241
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=93.58 E-value=0.65 Score=48.52 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHH
Q 012601 238 MALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISN 317 (460)
Q Consensus 238 ~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~ 317 (460)
+-++|+.|-+..-|...|.+ +. ...-|-..+|-++++...+...++.|++|.|....++.
T Consensus 57 N~~qWI~ya~i~n~~~~~Yg------s~--------------~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 57 NGMQWIQYAPINNYVNSFYG------SS--------------SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred CcchheeehhHHHHHHHHhc------ch--------------HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 44678888887766666543 11 22336778899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhH
Q 012601 318 FIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLN 397 (460)
Q Consensus 318 ~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n 397 (460)
...+++-..=.... . ..+|+. .........-++.+.+...++..|--+-+-.+++.+|......|++.
T Consensus 117 ~ln~iGa~Ir~iss----~-------p~v~~~-f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~ 184 (480)
T KOG2563|consen 117 VLNGIGAWIRLISS----L-------PFVPPL-FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMG 184 (480)
T ss_pred HHHHHHHHHhhhcc----C-------cccccc-chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhc
Confidence 88877554222111 0 111111 11125556667788888888888888888888876664444444443
No 242
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=93.35 E-value=0.23 Score=46.72 Aligned_cols=113 Identities=21% Similarity=0.154 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
....+.+...+...+.+++.||.|||+.+..+...+.++.+...+... . .....++.....|
T Consensus 44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~g 105 (338)
T COG0477 44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---V---------------GLALLLILRLLQG 105 (338)
T ss_pred HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---c---------------hHHHHHHHHHHHH
Confidence 444556666666789999999999998888887654444222332221 0 1334444444588
Q ss_pred hhhhhhcCccchhhhccccCCCCCcccchhhhHH-HHHHHHHHHhhcccccee
Q 012601 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNL-AIVIPQMIVSLGAGPWDA 416 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~-~~~l~qil~~~~~g~l~~ 416 (460)
++.+.......+++++..|+ .+.++...+.... ...++.++.+...+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 106 LGGGGLLPVASALLSEWFPE-ATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hhhHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999885 1245777777777 577777777755554443
No 243
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=93.19 E-value=0.57 Score=49.66 Aligned_cols=143 Identities=14% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGS-RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~-r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
....+++..++++.+-+.+..|.+. |+.+++|.++++++-+.-..+..... ..++..++.-.+.
T Consensus 76 viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~---------------~~~y~mL~~R~l~ 140 (488)
T KOG2325|consen 76 VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN---------------GVKYLMLVARILT 140 (488)
T ss_pred HHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc---------------chHHHHHHHHHHc
Confidence 4455888899999999999988875 77788888888877765534433221 1367777788889
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhc---cccce----ec-----ccCccchhHhHHHH
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLG---AGPWD----AL-----FGGGNIPAFVLASL 431 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~---~g~l~----~~-----~g~~~~~~f~~~~v 431 (460)
|+|.+.. .+--+.++...-.+ ++-+.++..+....+++++.|.+ +++|- .. ++.+ +.+-++.++
T Consensus 141 Gvg~~n~-a~lR~Y~a~~s~~~--dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~Y-Tap~w~m~i 216 (488)
T KOG2325|consen 141 GVGVGNF-AVLRAYIADASTVE--DRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMY-TAPAWLMAI 216 (488)
T ss_pred CcCcccH-HHHHHHHHhccCcc--chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEec-chHHHHHHH
Confidence 9997743 33344555433222 33456677777778888887653 22221 11 1112 345677777
Q ss_pred HHHHHHHHhhhccCC
Q 012601 432 SALAGGVVATLKLPH 446 (460)
Q Consensus 432 ~~lia~~~~~~~vpe 446 (460)
..++..++......|
T Consensus 217 ~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 217 LWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHHHHHHHhheee
Confidence 777777766655443
No 244
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=93.04 E-value=13 Score=39.62 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccc
Q 012601 43 GFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGA 94 (460)
Q Consensus 43 ~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~ 94 (460)
.+.++.|-.-.-....+---.-+..+|+++.|+..+ .+|.-+||+++.
T Consensus 124 ~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq----tvG~~~Gyfls~ 171 (544)
T PF13000_consen 124 FFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ----TVGQTAGYFLSF 171 (544)
T ss_pred HHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH----HhHhhhhHHHHH
Confidence 333344433333334444455566778888777777 666666666654
No 245
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=92.60 E-value=1.1 Score=46.57 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHH-HHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFA-CMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 286 l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
..+..+..++.+.++|.++|+-|+||-+.......++ +++++.++. +. . .++...+++++..
T Consensus 64 ~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~----~~-----s--------~~~~~l~~~il~~ 126 (438)
T COG2270 64 SAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP----PG-----S--------YLLLLLLFLILAS 126 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC----CC-----c--------hHHHHHHHHHHHH
Confidence 3445566677788899999999998888754444443 334555444 10 0 2667777888888
Q ss_pred hhhhhhcCccchhhhccccCCC--C--CcccchhhhHHHHHHHHHHHhhccc----c---ce---ecccCccchhHhHHH
Q 012601 365 FPLAITYSVPFAITAELTADSG--G--GQGLAIGVLNLAIVIPQMIVSLGAG----P---WD---ALFGGGNIPAFVLAS 430 (460)
Q Consensus 365 i~~a~~~~vp~aLis~~~~~~~--~--~~G~~~Gi~n~~~~l~qil~~~~~g----~---l~---~~~g~~~~~~f~~~~ 430 (460)
+++...+..=.+++.+..+++. | +.|..+|-+...+.+--.......+ . ++ ...+.+..-++.+++
T Consensus 127 i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A 206 (438)
T COG2270 127 IGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAA 206 (438)
T ss_pred HhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHH
Confidence 8888777777788888887531 1 2333333333332222111122222 1 11 122323344588888
Q ss_pred HHHHHHHHHhhhccCCCC
Q 012601 431 LSALAGGVVATLKLPHLS 448 (460)
Q Consensus 431 v~~lia~~~~~~~vpe~~ 448 (460)
+.-++-++=.++.+|+..
T Consensus 207 ~W~li~~iPm~~~v~~~~ 224 (438)
T COG2270 207 LWWLLFALPMILNVHDAE 224 (438)
T ss_pred HHHHHHHhHHHhcccccc
Confidence 777776665566777665
No 246
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=92.50 E-value=0.2 Score=53.40 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=81.6
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhh
Q 012601 300 IEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITA 379 (460)
Q Consensus 300 ~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis 379 (460)
..++++|+|+-+++.++++.+++=++...... ++|.++-+=.+-|+..|.+.|.--+.++
T Consensus 426 s~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--------------------n~W~vLPieilqgit~aliWaa~~sY~s 485 (618)
T KOG3762|consen 426 SFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--------------------NPWMVLPIEILQGITHALIWAAIISYAS 485 (618)
T ss_pred HHHHHHHhcccceeeehhhHHHHHHHHHHHhc--------------------CchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999998888876555433332 2677777778899999988887777888
Q ss_pred ccccCCCCCcccchhhhH-HHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 380 ELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 380 ~~~~~~~~~~G~~~Gi~n-~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
...|++.+ .+.-|++. .+.-++-=+.+++.|.+++.+|. .+.|..+++.+++..+..
T Consensus 486 ~vaPp~l~--at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~--~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 486 HVAPPGLR--ATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA--RTTFRIFGIACLVTLALF 543 (618)
T ss_pred hhCCCcch--HHHHHHHHHHhcccCcchhhhhhhhhheeehh--HHHHHHHHHHHHHHHHHH
Confidence 88887433 33334332 23345556678888888888885 357888887777655543
No 247
>PF12832 MFS_1_like: MFS_1 like family
Probab=92.26 E-value=0.66 Score=36.37 Aligned_cols=68 Identities=9% Similarity=0.012 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHH
Q 012601 235 LIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA 314 (460)
Q Consensus 235 ~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~ 314 (460)
....|+-+.+.-++.=|.+-|..+..++. . .+|. ...+-.++.++++.+.+.++||.++++...
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~-----------~----~iGi-l~~i~~~~~~~~~pl~g~laDk~~~~~~~l 69 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSP-----------S----QIGI-LSAIRPLIRFLAPPLWGFLADKFGKRKVIL 69 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCH-----------H----HHHH-HHHHHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence 34444445555555556677766533321 1 2332 344566678889999999999999998877
Q ss_pred HHHH
Q 012601 315 ISNF 318 (460)
Q Consensus 315 ~g~~ 318 (460)
....
T Consensus 70 ~~~~ 73 (77)
T PF12832_consen 70 LGSL 73 (77)
T ss_pred HHHH
Confidence 6543
No 248
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=91.22 E-value=2.3 Score=41.25 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=67.6
Q ss_pred HHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccc
Q 012601 296 SSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPF 375 (460)
Q Consensus 296 ~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~ 375 (460)
.+++.|.+.|++|.+.+..+|.+...+++........ + .++++ ..+...+++.+.|.+.+-+++.-.
T Consensus 52 ~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~---~--------~i~~~--~~~~~~~~~~l~~~s~~~~~ta~l 118 (250)
T PF06813_consen 52 FGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVS---G--------RIPSL--PVWLMCLFLFLGGNSSCWFNTASL 118 (250)
T ss_pred ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh---C--------ccCcc--chHHHHHHHHHHcccHHHhhhHHH
Confidence 3788899999999999999999998888887776542 1 11111 134444444444454443344422
Q ss_pred hhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce
Q 012601 376 AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (460)
Q Consensus 376 aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~ 415 (460)
.-..+-+|+ .+|+..|++-.+..++-.+-+.+.-.+.
T Consensus 119 vt~~~NFP~---~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 119 VTCVRNFPR---SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHhCcc---ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 223355664 4699999999999998887776555444
No 249
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=91.20 E-value=1.8 Score=45.54 Aligned_cols=114 Identities=8% Similarity=0.067 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHh
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
+-.+...+.+++..+...++..|+..|.=...++++..+.++.+..+... + .. .....+..++.+.+.
T Consensus 49 ~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~--~-----~~-----~~~~f~~~~~~v~~~ 116 (437)
T TIGR00939 49 YYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKV--Q-----TS-----ETGFFVTTMASVVII 116 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeee--c-----CC-----cchHHHHHHHHHHHH
Confidence 34444555666667777777788776333344555444433333332111 0 00 111245666777789
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhh
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~ 409 (460)
|++-+....--+++.+..-|+-.+..-...|+-.+..++.|++.-.
T Consensus 117 g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a 162 (437)
T TIGR00939 117 NSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKA 162 (437)
T ss_pred HhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 9999999999899988554321011111224455555566666543
No 250
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=89.72 E-value=9.7 Score=40.51 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=39.1
Q ss_pred HHHHhhcccccch-hHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccc
Q 012601 44 FWLLDLANNTVQG-PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAG 93 (460)
Q Consensus 44 ~~lld~a~n~~~~-p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig 93 (460)
++....-.+.+.+ -.-+++.|++++||-.|-+++.+...++|.++|-.+.
T Consensus 135 Yv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 135 YVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445565665555 7889999999999999999999888888888766443
No 251
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=89.55 E-value=3.1 Score=46.15 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhh
Q 012601 289 NSVVLGVSSFLIEPMCRW-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (460)
Q Consensus 289 ~si~~~l~s~i~~~l~~r-iG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (460)
+...+-+..++.+.+.|+ +|+++...++.+++.++++++.+.... . ... + ......++.+++..+|.
T Consensus 32 f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~--~----~~~-----~-~~~~~~l~gLaLia~G~ 99 (654)
T TIGR00926 32 FTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP--S----SGH-----P-LHDLLDLLGLALIALGT 99 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc--c----ccc-----c-hHHHHHHHHHHHHHhhc
Confidence 444455567888888887 599999999988888888665542210 0 000 0 01334566677788888
Q ss_pred hhhcCccchhhhccccCCCC-CcccchhhhHHHHHHHHHHHhhccccceecc---cC--ccchhHhHHHHHHHHHHHH
Q 012601 368 AITYSVPFAITAELTADSGG-GQGLAIGVLNLAIVIPQMIVSLGAGPWDALF---GG--GNIPAFVLASLSALAGGVV 439 (460)
Q Consensus 368 a~~~~vp~aLis~~~~~~~~-~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~---g~--~~~~~f~~~~v~~lia~~~ 439 (460)
+..-+..-++.++..+++++ ..-....+...++.++.++++.+.+.+-+.. |. .....|.+.+++.+++.+.
T Consensus 100 GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 100 GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 88888888899988765321 2233334444444455555555554443222 10 1223577777777766654
No 252
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=88.81 E-value=6.5 Score=40.59 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccccc
Q 012601 40 FVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGAS 95 (460)
Q Consensus 40 ~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i 95 (460)
....+.+++|...+-.......-.-+..+|+-+-|+..+ .+|.-.||+++..
T Consensus 136 lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q----~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 136 LTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQ----SVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHH----HHHHhhhHHhhcc
Confidence 334556677776666667788888888999999888888 6666666666653
No 253
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=88.69 E-value=11 Score=38.49 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCc---------cc
Q 012601 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG---------NI 423 (460)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~---------~~ 423 (460)
.+...+...+++..+..+.+|--+-+++-+.+ |..|...|+-+...-+-|-+..+ .++|..|-+ +.
T Consensus 326 Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~--e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~ 400 (433)
T KOG3810|consen 326 IWVCYAGYVLFRVIYQLTITIATFQIARNLSS--ELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYS 400 (433)
T ss_pred eehhhhhHHHHHhhHhhhhhHHHHHHHHhhhh--hhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEe
Confidence 45667777778888887777766666666654 67899999877666666655443 334422210 11
Q ss_pred hhHhHHHHHHHHHHHHh
Q 012601 424 PAFVLASLSALAGGVVA 440 (460)
Q Consensus 424 ~~f~~~~v~~lia~~~~ 440 (460)
.-|.+-|++.++++...
T Consensus 401 ~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 401 SYFIVLGVIFLIGFGIE 417 (433)
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 23777777777776543
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=88.49 E-value=8.8 Score=39.89 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcc
Q 012601 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA 411 (460)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~ 411 (460)
.+.+++++..-|+.-|..+..-|..++|..|++ ++...||+..+...++-.+++++.
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~--~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPE--DREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 677888888899999999999999999988764 456677999999999998888764
No 255
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=87.36 E-value=11 Score=39.38 Aligned_cols=138 Identities=10% Similarity=-0.006 Sum_probs=72.1
Q ss_pred HHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcC
Q 012601 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (460)
Q Consensus 293 ~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (460)
.+..-++.-.+.|.+|-|++.+++.+...+...++.+.. + +...-+.-.+.|++.|+ ..
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~----s----------------v~~mq~~q~~yg~~~a~-ev 112 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT----S----------------VLAMQLMQFFYGLATAA-EV 112 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC----c----------------HHHHHHHHHHHHHHHHH-HH
Confidence 444566677889999999999988666555554433332 2 56667777788888884 23
Q ss_pred ccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHhhhccCCCCCCCc
Q 012601 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSNSF 452 (460)
Q Consensus 373 vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe~~~~~~ 452 (460)
+=|+.+=...|++ +.=+..+.-..+.-++..++++++=.+++.-+........++-....++.+ ..+++|..+.+-|
T Consensus 113 ay~sYiys~v~~~--~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~-~~~fLP~~~~S~~ 189 (412)
T PF01770_consen 113 AYYSYIYSVVDKE--HYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL-IALFLPMPKRSLF 189 (412)
T ss_pred HHHHHheeecCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHcCCCCcccc
Confidence 3233333333331 222233445555555555555432222222222222233443333333333 3466777666555
Q ss_pred cC
Q 012601 453 RS 454 (460)
Q Consensus 453 ~~ 454 (460)
..
T Consensus 190 f~ 191 (412)
T PF01770_consen 190 FH 191 (412)
T ss_pred ee
Confidence 43
No 256
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=83.95 E-value=18 Score=38.12 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHH-----Hh
Q 012601 289 NSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT-----LL 363 (460)
Q Consensus 289 ~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 363 (460)
-++..+...++.+++.+|+|..|.=..|.....+|+..... ..+... .|.+..+....+..++ +.
T Consensus 302 gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~-~~~~~~---------~~~~~~s~~~l~~gi~~SR~GLW 371 (432)
T PF06963_consen 302 GAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVV-SFWAPG---------SPFSSISAYLLLGGIALSRIGLW 371 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH-HHhcCC---------CCchhhHHHHHHHHHHHHHHHHH
Confidence 45556677899999999999988888887777766643332 222111 0000011222222222 22
Q ss_pred hhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhh
Q 012601 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (460)
Q Consensus 364 Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~ 409 (460)
++-.+.. -++=|..|+ +++|...|+.+....+..++.-.
T Consensus 372 ~fDL~~~-----qi~Qe~V~~--~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 372 SFDLAVT-----QIMQENVPE--SERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred hhhHHHH-----HhhcccCCH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 2222222 144555665 35688999999888888777644
No 257
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=82.55 E-value=1.7 Score=43.38 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccceeccc-------------
Q 012601 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG------------- 419 (460)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g------------- 419 (460)
....++.+.+.|.|.+...+.--+++++.-|+ ++..+.+++...+..++.++.|++.+.++....
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~--~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPI--ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 44566677788999999988888899988776 356888999999999999999998887663210
Q ss_pred -CccchhHh-HHHHHHHHHHHHhhhccCCCCC
Q 012601 420 -GGNIPAFV-LASLSALAGGVVATLKLPHLSS 449 (460)
Q Consensus 420 -~~~~~~f~-~~~v~~lia~~~~~~~vpe~~~ 449 (460)
.....++. ++++..+++.++...-.||.+.
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~ 119 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQE 119 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 01123444 5555555555554445676543
No 258
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=80.87 E-value=54 Score=36.51 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHhhcccccchhHHHHHhcCCCcc---chhhHHHHHHHHHHhhhhhhhcccccccccccccccccchh
Q 012601 34 TRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPD---QRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRAC 110 (460)
Q Consensus 34 ~~~i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~---qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~ 110 (460)
++...+..+|+.+.-.+...+-...-++..|..+++ +|.+.+.|.-..+++|++++..+-.. ..+...
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~--l~~~~~------- 152 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPI--LRGDVG------- 152 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc-------
Confidence 344455668888888999999899999999999764 36778888888888888887655433 111000
Q ss_pred hccc--cchhHHHHHHHHHHHHHhhheeE
Q 012601 111 CAAC--GNLKAAFLVAVVFLTLCALVTIY 137 (460)
Q Consensus 111 ~~~~--~~~~~~f~i~~i~~~i~~~itl~ 137 (460)
.++ ..|...|.+.++.+++++++...
T Consensus 153 -~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 153 -CFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred -ccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 000 14888999999998877766443
No 259
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.74 E-value=82 Score=33.44 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=59.3
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhcccccc---Ccccc-CCCCcchhHHHHHHHHHHhhhhhhhhcCccch
Q 012601 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYS---GGIEH-GIGANQAIKVASLVVFTLLGFPLAITYSVPFA 376 (460)
Q Consensus 301 ~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~a 376 (460)
++-+|++|++++..++..+.-+..++..+.. +.+.+ ++... -.++ ....+++.-.++|++-++.++.-+.
T Consensus 303 ~~rir~fg~~~~~~~~~~~~~~~~~li~l~~---p~dap~~~t~~~~~~~~~---~~~~~~ii~~l~G~~D~~~~t~~~~ 376 (461)
T KOG3098|consen 303 SKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF---PNDAPLRPTDSPPLLFTP---SYYLALIIGFLLGFGDACFNTQRYV 376 (461)
T ss_pred hhhhhhcccCcchhHHHHHHHHHHHHHhccc---cccCCCCCCccccccccc---chhHHHHHHHHHhhHHHHHHHHHHH
Confidence 3345778999988887666655444333221 12221 01110 0111 2456777778899999999999999
Q ss_pred hhhccccCCCCCcccchhhhHHHHHHHHHHHhh
Q 012601 377 ITAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (460)
Q Consensus 377 Lis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~ 409 (460)
+++.+.|++ ...+..+.-....++..++..
T Consensus 377 ii~~~~~~~---~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 377 IIALLYPDD---RAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHHHHhcCc---hHHHHHHHHHHHHHHHHHHhh
Confidence 999999763 244455555555555544433
No 260
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=78.59 E-value=4.7 Score=41.04 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=67.3
Q ss_pred ccchhHHHHHHHHHHhhcccccchhHHHHHhcCCCcc---chhhHHHHHHHHHHhhhhhhhcccccccccccccccccch
Q 012601 33 RTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPD---QRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRA 109 (460)
Q Consensus 33 ~~~~i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~---qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~ 109 (460)
+.+...+..+|+.++-++....-.-.-++++|..+++ +|.+.+.|+=..+++|..+++.+.... .+
T Consensus 29 ~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i--~~--------- 97 (372)
T PF00854_consen 29 SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYI--QQ--------- 97 (372)
T ss_dssp -----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHH--HH---------
T ss_pred hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhh--cc---------
Confidence 3456677888899998888888888999999999875 478899999999999999998776542 21
Q ss_pred hhccccchhHHHHHHHHHHHHHhhhee
Q 012601 110 CCAACGNLKAAFLVAVVFLTLCALVTI 136 (460)
Q Consensus 110 ~~~~~~~~~~~f~i~~i~~~i~~~itl 136 (460)
...|.+.|.++.+.+++++++.+
T Consensus 98 ----~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 98 ----NYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp ----CS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccchhhhhhHHHHHHHHHHHHHH
Confidence 13688899999998887776533
No 261
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=74.93 E-value=63 Score=34.60 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=32.3
Q ss_pred Hhhcccccch-hHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhh
Q 012601 47 LDLANNTVQG-PARALLADLSGPDQRNSANAIFCSWMAVGNILGF 90 (460)
Q Consensus 47 ld~a~n~~~~-p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy 90 (460)
-+.--+.+.+ -.-.+.-|+++.+|-.|-++......++|.+++-
T Consensus 153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG 197 (491)
T PF03219_consen 153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSG 197 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 3578889999999999999999777777777643
No 262
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=72.36 E-value=9.8 Score=38.71 Aligned_cols=117 Identities=8% Similarity=0.012 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCC-CCCc
Q 012601 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS-GGGQ 389 (460)
Q Consensus 311 ~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~-~~~~ 389 (460)
|+..+|.+++.++++++.+.... +. ...+ ......++...+.++|.|.+-+.--++++|.++++ ++.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~--~~----~~~~-----~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP--PS----LPSG-----IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS--SS----C-----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc--ch----hhhh-----HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 34556777777777654443321 10 0000 01344566666789999989888889999999875 3444
Q ss_pred ccchhhhHHHHHHHHHHHhhccccceecccCccchhHhHHHHHHHHHHHHh
Q 012601 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (460)
Q Consensus 390 G~~~Gi~n~~~~l~qil~~~~~g~l~~~~g~~~~~~f~~~~v~~lia~~~~ 440 (460)
......+...+.++-+++....+.+-+..|. ...|.+.++..+++.+..
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~--~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQQNYGW--FLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHCS-H--HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhccccch--hhhhhHHHHHHHHHHHHH
Confidence 5555677777777777877777776655552 346888888887777643
No 263
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=71.58 E-value=18 Score=38.50 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhHHHHhhhcCch-------hHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHH
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSR-------LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r-------~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (460)
++.+.-++.+-+..++..+.+++ .=+.+|..+.+.+++.+........+ |++..+.+..+...
T Consensus 332 lNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~----------~~~~~s~~~lil~y 401 (498)
T COG3104 332 LNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG----------PSGLVSVWWLVLSY 401 (498)
T ss_pred hCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC----------CCCCcCHHHHHHHH
Confidence 34445555565666655553332 22446777777777655544221111 11222345555566
Q ss_pred HHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcccc------ceecccCccchhHhHHHHHHH
Q 012601 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGP------WDALFGGGNIPAFVLASLSAL 434 (460)
Q Consensus 361 ~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~------l~~~~g~~~~~~f~~~~v~~l 434 (460)
.+.+++==....+-.+.+.+..|+ +-++..||+.-..+..+|.+.+.+.+. ..+.... ...|...++...
T Consensus 402 ~l~s~gEL~iSpvGLs~~t~laP~--~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~--~~~F~~~g~v~i 477 (498)
T COG3104 402 VLQSFGELFISPVGLSMVTKLAPP--ALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE--GRVFGTIGVVAI 477 (498)
T ss_pred HHHHHHHHHhCHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh--hhhHHHHHHHHH
Confidence 666666666667777788888887 467889999999999999999887763 2222221 235777777766
Q ss_pred HHHHHhhhccC
Q 012601 435 AGGVVATLKLP 445 (460)
Q Consensus 435 ia~~~~~~~vp 445 (460)
+..+......|
T Consensus 478 ~~~~~~~~~~~ 488 (498)
T COG3104 478 VIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHhhH
Confidence 66655444444
No 264
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.11 E-value=23 Score=37.61 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhh
Q 012601 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (460)
Q Consensus 285 ~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (460)
+.++--....++.+..|.+++++|.|..+++|...++.-.++..+. | .+-.+..-++.|
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-----N----------------~y~~yfssallG 113 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-----N----------------SYYLYFSSALLG 113 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-----c----------------hHHHHHHHHHhh
Confidence 3444333566778899999999999999999987777655443322 2 566788888999
Q ss_pred hhhhhhcCccc-hhhhccccCCCCCcccchhhhHHHHHHHHHHHhh
Q 012601 365 FPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (460)
Q Consensus 365 i~~a~~~~vp~-aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~ 409 (460)
+|.| +.|.-. ..++|.-++ +...+..++.=..-...-++.+.
T Consensus 114 ~Gaa-llw~GqG~ylt~~st~--~tie~Nisi~Wai~~~~li~Ggi 156 (461)
T KOG3098|consen 114 FGAA-LLWTGQGGYLTSNSTR--ETIERNISIFWAIGQSSLIIGGI 156 (461)
T ss_pred hhHH-heecccceehhhcCCh--hhHHHHHHHHHHHHHHHHHhhhH
Confidence 9999 445532 233333332 33444445544444444444443
No 265
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=69.80 E-value=29 Score=36.11 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=54.9
Q ss_pred cchhHHHHHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhcc
Q 012601 34 TRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAA 113 (460)
Q Consensus 34 ~~~i~~~v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~ 113 (460)
.+.-+++++.+++++++....|+....+.++..++--|+-..|- ++++++.-++--+ .+.. ..+.
T Consensus 114 ~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~-----a~aG~l~Sl~~i~---tka~--~~~~----- 178 (406)
T KOG1479|consen 114 NGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQ-----ALAGTLTSLLRIL---TKAA--FSDS----- 178 (406)
T ss_pred chhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcc-----hhHhHHHHHHHHH---HHHh--cCCC-----
Confidence 45556778888999999999999999999998766555433332 1222222111110 0000 0000
Q ss_pred ccchhHHHHHHHHHHHHHhhheeEEeeccCC
Q 012601 114 CGNLKAAFLVAVVFLTLCALVTIYFADEVPL 144 (460)
Q Consensus 114 ~~~~~~~f~i~~i~~~i~~~itl~~v~E~p~ 144 (460)
...--.-|.++.++.++|++.-. ..|..|.
T Consensus 179 ~~sA~~yF~~s~~~~llC~i~y~-~l~~lpf 208 (406)
T KOG1479|consen 179 RTSALIYFITSTVILLLCFVLYL-VLPKLPF 208 (406)
T ss_pred CceeehhHHHHHHHHHHHHHHHH-HhhcchH
Confidence 11233567888888888887544 5555554
No 266
>PRK03612 spermidine synthase; Provisional
Probab=68.69 E-value=66 Score=34.71 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHhhhhhhhhcCccchhhhccccCC-CCCcccchhhhHHHHHHHHHHHhhccccce-ecccCccchhHhHHHHHHHHHH
Q 012601 360 FTLLGFPLAITYSVPFAITAELTADS-GGGQGLAIGVLNLAIVIPQMIVSLGAGPWD-ALFGGGNIPAFVLASLSALAGG 437 (460)
Q Consensus 360 ~~~~Gi~~a~~~~vp~aLis~~~~~~-~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~-~~~g~~~~~~f~~~~v~~lia~ 437 (460)
+.+.|+..|.. + .++.+..... .++.|...|-+..++.++-++.+++.|.++ ..+|... ..+.+ +.++++++
T Consensus 117 ~~~~~~l~G~~--~--Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~-t~~~~-a~l~~~~a 190 (521)
T PRK03612 117 VLLIGLLIGME--I--PLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIR-TAALT-GSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHH--H--HHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHH-HHHHH-HHHHHHHH
Confidence 33445555544 3 3555554432 123677789999999999999999888754 5777532 23443 34444444
Q ss_pred H
Q 012601 438 V 438 (460)
Q Consensus 438 ~ 438 (460)
+
T Consensus 191 ~ 191 (521)
T PRK03612 191 L 191 (521)
T ss_pred H
Confidence 3
No 267
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=65.47 E-value=1.7e+02 Score=30.79 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVR-EGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~-~G~~~l~~~si~~~l~s~i~~~l~~riG 308 (460)
..+++++.||++-.+-=...+-.+-|+.+ +|.++ .. .+.+++ .-+++.++++-..|+++||..
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~-i~p~s--------------Ll~~siygl-~~~~~~~~f~~~vG~~iD~~~ 66 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLIS-IFPGS--------------LLPVSIYGL-VRSLSAILFGPWVGRWIDRSP 66 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC--------------cHHHHHHHH-HHHHHHHHhhHHHHHHHhCCc
Confidence 45678889998866644444444445443 55432 11 222333 234456667777899999998
Q ss_pred chhHHHHHHHHH
Q 012601 309 SRLVWAISNFIV 320 (460)
Q Consensus 309 ~r~l~~~g~~~~ 320 (460)
|.+..-.+.+..
T Consensus 67 Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 67 RLKVIRTSLVVQ 78 (432)
T ss_pred chhhHHHHHHHH
Confidence 877755554443
No 268
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=64.00 E-value=27 Score=34.94 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=41.4
Q ss_pred HHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhccccc
Q 012601 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGAS 95 (460)
Q Consensus 42 ~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i 95 (460)
.+.+++.++-..+-...--.++-++|++|.|.+++..+...++|-.+-..+.++
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence 344566666555544456667788999999999999999999998887777665
No 269
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=57.23 E-value=51 Score=35.14 Aligned_cols=118 Identities=7% Similarity=-0.026 Sum_probs=67.9
Q ss_pred HHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCcc-----ccCCCCcc------hhHH---HHHH
Q 012601 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGI-----EHGIGANQ------AIKV---ASLV 358 (460)
Q Consensus 293 ~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~---~~~~ 358 (460)
++++..+..++++|++|++++-+-...|...+++.+++..-.++..|.+. ...+|++. ...| ..++
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 34446677899999999999988888887777666665321111111100 00111110 0011 2222
Q ss_pred HHHHhhhhhhhhcC-ccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccce
Q 012601 359 VFTLLGFPLAITYS-VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (460)
Q Consensus 359 ~~~~~Gi~~a~~~~-vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l~ 415 (460)
..-+.|. ...+ +=++.+.|.++. +...+..++.+....++.++++.....+.
T Consensus 137 ~~elw~~---~vvS~lFW~fandi~t~--~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 137 MAELWGS---VVLSLLFWGFANQITTI--DEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHH---HHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2222 444588888875 35678999999999999999987665543
No 270
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=55.59 E-value=3.7 Score=44.43 Aligned_cols=150 Identities=12% Similarity=0.048 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHhhhhccccccC--cc-----------cc--------
Q 012601 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWA-ISNFIVFACMATTAIISVISVREYSG--GI-----------EH-------- 344 (460)
Q Consensus 287 ~~~si~~~l~s~i~~~l~~riG~r~l~~-~g~~~~ai~~~~~~~~~~~~~~~~~~--~~-----------~~-------- 344 (460)
..|-+..++..++.-.+-+| |.|.-|+ +|.++++++.++.++-+...+ .|+. .. ..
T Consensus 45 s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~-~y~~~~~~~~~~~~~~~~~~c~~~~~~~~ 122 (539)
T PF03137_consen 45 SSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSG-PYSYEEASNSNGNSSISSNLCDSSSSSQA 122 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcC-CCccccccccccccccccccccccccccc
Confidence 34666666666666666666 4555555 899999998887776443321 1110 00 00
Q ss_pred --------C--CCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccc
Q 012601 345 --------G--IGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW 414 (460)
Q Consensus 345 --------~--~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l 414 (460)
. -.....-....++.-.+.|+|-++++++-.+.+=|-.++ +..+.|+|++..+..++..+.=++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~--~~splYiGi~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 123 SSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK--KNSPLYIGILYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp -----------------------------SSS------------------------------------------------
T ss_pred cCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc--ccCccchhhhhHHhhccHHHHHHHHHHH
Confidence 0 000001124455555689999999999988888888776 5679999999999999887776665544
Q ss_pred ee----cccC----------c-----cchh-HhHHHHHHHHHHHHh
Q 012601 415 DA----LFGG----------G-----NIPA-FVLASLSALAGGVVA 440 (460)
Q Consensus 415 ~~----~~g~----------~-----~~~~-f~~~~v~~lia~~~~ 440 (460)
++ .... + .+|. |++.|++.++.++-.
T Consensus 201 L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 201 LRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp ----------------------------------------------
T ss_pred HhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1100 0 1223 888888888777643
No 271
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=53.88 E-value=21 Score=27.95 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=37.9
Q ss_pred chhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhheeEEeeccCC
Q 012601 70 QRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPL 144 (460)
Q Consensus 70 qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl~~v~E~p~ 144 (460)
-|.++.-+.+....+++++++.+|.+. .+++.++++-++-.+++.+ +.+|+=|.
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~------------------q~~~~~~~~~~~g~~~~~l---v~vP~Wp~ 58 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYIT------------------QSFSYTFYIYGAGVVLTLL---VVVPPWPF 58 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHh---heeCCcHh
Confidence 466788889999999999999999751 2566666665555554544 46777654
No 272
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=50.20 E-value=59 Score=35.28 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=35.6
Q ss_pred ccchhHHHHHhcCCCccchhhHHHHHHH-HHHhhhhhhhccccc
Q 012601 53 TVQGPARALLADLSGPDQRNSANAIFCS-WMAVGNILGFSAGAS 95 (460)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~-~~glG~ilgy~ig~i 95 (460)
++.+.+-+|++|.+||+-|+.+.++.+. .-|+|--+|-++|+.
T Consensus 475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence 4567788999999999999999888765 458888888888876
No 273
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=47.83 E-value=1.4e+02 Score=29.31 Aligned_cols=25 Identities=12% Similarity=0.265 Sum_probs=17.7
Q ss_pred ccchhHHHHHHHHHHHHHhhheeEE
Q 012601 114 CGNLKAAFLVAVVFLTLCALVTIYF 138 (460)
Q Consensus 114 ~~~~~~~f~i~~i~~~i~~~itl~~ 138 (460)
..+||.++.+.+++.++-+++-.++
T Consensus 37 ~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 37 TNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999998887776665554444
No 274
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.85 E-value=37 Score=27.54 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHhhhhhhhccccc
Q 012601 71 RNSANAIFCSWMAVGNILGFSAGAS 95 (460)
Q Consensus 71 r~~a~~~~~~~~glG~ilgy~ig~i 95 (460)
|.++--+++....+|+++|++.|+.
T Consensus 21 QkkaEr~~q~ilti~aiVg~i~Gf~ 45 (101)
T KOG4112|consen 21 QKKAERFQQLILTIGAIVGFIYGFA 45 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999963
No 275
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=40.26 E-value=65 Score=31.24 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=44.6
Q ss_pred hHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHHHHHHHHHHHHHhhhee
Q 012601 57 PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTI 136 (460)
Q Consensus 57 p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~i~~~i~~~itl 136 (460)
.+-.--....| ++||.+.++..-..|+++.+=-.+... +++ + +.-+.++.++..+.+++++ .+
T Consensus 116 a~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~-----~f~---~-------~~~~fll~la~~~~~v~l~-~~ 178 (250)
T PF06813_consen 116 ASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA-----FFG---D-------DPSSFLLFLAVLPAVVCLV-AM 178 (250)
T ss_pred HHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHH-----HcC---C-------ChHHHHHHHHHHHHHHHHH-Hh
Confidence 33333445565 689999999999999988773322211 111 1 2345567777777766654 56
Q ss_pred EEeeccCCC
Q 012601 137 YFADEVPLT 145 (460)
Q Consensus 137 ~~v~E~p~~ 145 (460)
+++++.|..
T Consensus 179 ~~vr~~~~~ 187 (250)
T PF06813_consen 179 FFVRPVPPS 187 (250)
T ss_pred hheeccCCc
Confidence 778877643
No 276
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.35 E-value=71 Score=35.92 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccc----eec-cc------Ccc-
Q 012601 355 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW----DAL-FG------GGN- 422 (460)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l----~~~-~g------~~~- 422 (460)
..++.-.+.|||-.++.++-.+++=|-... ++...|+|++++.-.++=++.=++.+.. +|. .. .+.
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~--~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPr 316 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKK--KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPR 316 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccc--cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcc
Confidence 444455678888888777766666665544 4678999999988887766655544433 232 11 011
Q ss_pred ----chh-HhHHHHHHHHHHHHhhhccCCCCCCCc
Q 012601 423 ----IPA-FVLASLSALAGGVVATLKLPHLSSNSF 452 (460)
Q Consensus 423 ----~~~-f~~~~v~~lia~~~~~~~vpe~~~~~~ 452 (460)
+|. |+++|.+++++++. +++.|+++.++=
T Consensus 317 WIGAWWlGFLi~g~~~~~~a~p-~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 317 WIGAWWLGFLICGALLLFSAVP-LFFFPKELPKSQ 350 (735)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHhCcccCcccc
Confidence 222 99999999998885 467787777664
No 277
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=35.82 E-value=5e+02 Score=26.61 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHhhheeEEeecc
Q 012601 118 KAAFLVAVVFLTLCALVTIYFADEV 142 (460)
Q Consensus 118 ~~~f~i~~i~~~i~~~itl~~v~E~ 142 (460)
..+|..++++++++.++....=+|.
T Consensus 195 vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 195 VAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred cchHHHHHHHHHHHHHHHHhccccc
Confidence 5688888888887776644444554
No 278
>PRK10692 hypothetical protein; Provisional
Probab=34.87 E-value=65 Score=25.78 Aligned_cols=60 Identities=8% Similarity=-0.039 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHHHHHHHH-hhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhh
Q 012601 309 SRLVWAISNFIVFACMATTAI-ISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAIT 378 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLi 378 (460)
||....+|..+|+++|+.+.. +...-.+ ++. ..+..-.+.-.+++||..|++.|+-=|=+
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~----~i~------~L~Lp~~~~~gal~~IFiGAllWL~GAri 63 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVVGVGYSILN----QLP------QLNLPQFFAHGALLSIFVGALLWLAGARV 63 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHH----hcc------cCCchHHHHhhHHHHHHHHHHHHHhcccc
Confidence 678888999999999875543 1110001 010 11244566777889999999999643333
No 279
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=34.65 E-value=35 Score=33.80 Aligned_cols=138 Identities=15% Similarity=0.060 Sum_probs=67.5
Q ss_pred HHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhc
Q 012601 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (460)
Q Consensus 292 ~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (460)
.++++..+.+.+.||-|||+..+.= ++-+.+-.....+ |+ .-+.++.-++-|++.+.+.
T Consensus 84 SsmLFGtivgSLaDkqGRKracvty----citYiLsCiTKhS---------------pq--YkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 84 SSMLFGTIVGSLADKQGRKRACVTY----CITYILSCITKHS---------------PQ--YKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred hHHHHHHHHHHHHhhhccccceeee----hHHHHHHHHhhcC---------------Cc--eEEEeehhhhhhHHHHHHH
Confidence 5788899999999999999875532 3333333333322 11 1123444455666655443
Q ss_pred Cccch-hhhccccCCCCCcccchhhhHHHHHHHHHHHhhccc----cceecccCccchhHhHHHHHHHHHHHHhhhccCC
Q 012601 372 SVPFA-ITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAG----PWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (460)
Q Consensus 372 ~vp~a-Lis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g----~l~~~~g~~~~~~f~~~~v~~lia~~~~~~~vpe 446 (460)
+.-=+ ++.|....++=.+-....-+.=+..+.|=++..+.| .+++.++-++.++|.-++.+-.++......---|
T Consensus 143 SaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~E 222 (454)
T KOG4332|consen 143 SAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSE 222 (454)
T ss_pred HHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhh
Confidence 32111 344433221001111222233334444433333333 3556555445556877776655555444333334
Q ss_pred CCCC
Q 012601 447 LSSN 450 (460)
Q Consensus 447 ~~~~ 450 (460)
-.|+
T Consensus 223 Nygd 226 (454)
T KOG4332|consen 223 NYGD 226 (454)
T ss_pred ccCC
Confidence 4443
No 280
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=30.32 E-value=1.8e+02 Score=30.37 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHH
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGS-RLVWAISNFIVFACMATTAI 329 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~-r~l~~~g~~~~ai~~~~~~~ 329 (460)
..-+-+++.-++.|++++|+.- .|+++. .++++++|++.++
T Consensus 67 adi~P~l~~Kl~aP~fi~~v~y~~Ri~~~-~~l~~~g~l~va~ 108 (402)
T PF02487_consen 67 ADILPSLLVKLIAPFFIHRVPYWIRILIC-VALSAAGMLLVAF 108 (402)
T ss_pred HHHHHHHHHHHHhHhhhhhccchHHHHHH-HHHHHHHHhheee
Confidence 3444566667788998888863 344443 3345555554443
No 281
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=28.32 E-value=4.2e+02 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHhhheeEEeeccCCCC
Q 012601 118 KAAFLVAVVFLTLCALVTIYFADEVPLTV 146 (460)
Q Consensus 118 ~~~f~i~~i~~~i~~~itl~~v~E~p~~~ 146 (460)
+...+++...+++.++.+.+...=+-+|.
T Consensus 8 ~t~lIi~stsF~LG~lf~~~~yD~~~Lw~ 36 (196)
T PF08229_consen 8 GTGLIICSTSFLLGVLFSNWPYDYPTLWS 36 (196)
T ss_pred eeeeehHhhHHHHHHHHHcccchhHHhcC
Confidence 34446777777777777777664444454
No 282
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=27.81 E-value=6e+02 Score=25.47 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhccccc-eecccCccchhHhHHHHHHHHHHHH
Q 012601 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW-DALFGGGNIPAFVLASLSALAGGVV 439 (460)
Q Consensus 361 ~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~g~l-~~~~g~~~~~~f~~~~v~~lia~~~ 439 (460)
+-.|+-|-.++ -+=++|+|++.| -+++|.+-.=-++.+.+..=-+ ++.........|-+++.+-+++.+.
T Consensus 356 ~cvGlfwPSim----kmRsqyIPEear-----stimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 356 ACVGLFWPSIM----KMRSQYIPEEAR-----STIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHhhcchHHH----HHHHhhCCHHHH-----hhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence 34566665443 366899997532 2688888777777777642111 1222222223688888888888776
Q ss_pred hh
Q 012601 440 AT 441 (460)
Q Consensus 440 ~~ 441 (460)
..
T Consensus 427 ~~ 428 (454)
T KOG4332|consen 427 QR 428 (454)
T ss_pred HH
Confidence 55
No 283
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=24.46 E-value=1.2e+02 Score=32.36 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh----
Q 012601 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR---- 305 (460)
Q Consensus 230 ~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~~G~~~l~~~si~~~l~s~i~~~l~~---- 305 (460)
.+..++.+.+--.++|..=..|.|.|+.+.. -|+. + .+.-+++ + =+...+..-+.|..+|
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~lG---vphk-------~-~S~iw~~-g----Pi~G~~vQP~vG~~SDrc~s 96 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSLG---VPHK-------W-SSIIWLC-G----PLSGLLVQPLVGSASDRCTS 96 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHcC---CCcc-------c-ccccccc-c----ccccceeccccccccccccc
Confidence 3445666677777888888889999887532 2221 1 1111211 1 1112222223344444
Q ss_pred hcCchhHHH-HHHHHHHHHHHHHHHhhhh----ccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCccchhhhc
Q 012601 306 WIGSRLVWA-ISNFIVFACMATTAIISVI----SVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (460)
Q Consensus 306 riG~r~l~~-~g~~~~ai~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp~aLis~ 380 (460)
|+||||.++ .+.+..++++.++.+..-. ..+++.. ... ......++-+-++-++.-+...=--+++++
T Consensus 97 r~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~-~~~------rai~~~~lg~~LLD~A~n~~qgp~ra~L~D 169 (498)
T KOG0637|consen 97 RYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKP-VKP------RAIVLFILGFWLLDVANNTLQGPCRALLAD 169 (498)
T ss_pred ccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccc-cch------HHHHHHHHHhHHHHhhhhhhhhhHHHHHHH
Confidence 589999988 5556666666655553311 0011000 000 011222333334455554455555567777
Q ss_pred cccCCCCCccc-chhhhHHHHHHHHHHHhhc
Q 012601 381 LTADSGGGQGL-AIGVLNLAIVIPQMIVSLG 410 (460)
Q Consensus 381 ~~~~~~~~~G~-~~Gi~n~~~~l~qil~~~~ 410 (460)
......+ -+ +.+.+..++.+++.+.=..
T Consensus 170 l~~~d~~--~~~Ans~f~~f~avGnvLGY~~ 198 (498)
T KOG0637|consen 170 LARGDAK--KTRANSVFSFFMAVGNVLGYAL 198 (498)
T ss_pred hccChhh--hhccchhHHHHHHhcceeeeec
Confidence 7643222 22 7788999998888776544
No 284
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=24.38 E-value=1e+02 Score=24.51 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH-hhhhccccccCccccCCCCcchhHHHHHHHHHHhhhhhhhhcCcc
Q 012601 309 SRLVWAISNFIVFACMATTAI-ISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (460)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vp 374 (460)
||....+|..+|+++|+.+.. +...-.+ ++. ..+..-.+.-.+++||..|++.|+-
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~----~~~------~L~Lp~~~~~gal~~IFiGAllWL~ 59 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMVGGIGYSILS----QIP------QLGLPQFLAHGALFSIFIGALLWLV 59 (89)
T ss_pred chhhHHHhhHHHHHhHHHHHHhHHHHHHH----hcc------cCCCcHHHHhhHHHHHHHHHHHHHh
Confidence 678888999999998875443 1110001 010 0123345666778888888888863
No 285
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=23.54 E-value=1.9e+02 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=20.4
Q ss_pred HHHhcCCCccchhhHHHHHHHHHHhhhhh
Q 012601 60 ALLADLSGPDQRNSANAIFCSWMAVGNIL 88 (460)
Q Consensus 60 A~i~D~~p~~qr~~a~~~~~~~~glG~il 88 (460)
.=+-|+.||.+|....+..+......--+
T Consensus 56 ~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 56 YALKDIVPPTTRGWIYHKYSTTTNFVKST 84 (145)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999998887776555443333
No 286
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=22.81 E-value=4e+02 Score=21.26 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhh
Q 012601 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIIS 331 (460)
Q Consensus 288 ~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~ 331 (460)
.+.+-.++.++...++.++.++++++..+.+..+++.+.+++..
T Consensus 35 aNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 35 ANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555667777888888887778888888888777777666654
No 287
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.51 E-value=6.2e+02 Score=23.41 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhccc
Q 012601 232 HVVLIVMALTWLSWFPFFLFDTD 254 (460)
Q Consensus 232 ~~l~l~~f~~w~g~~~~~~y~t~ 254 (460)
+..++-..+.++++++++.-...
T Consensus 79 ~~~~ld~~L~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 79 WLMALDNSLLFFGIFSLLFGIMG 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666677766655444
No 288
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=20.76 E-value=24 Score=35.04 Aligned_cols=304 Identities=10% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhhhhhcccccccccccccccccchhhccccchhHH
Q 012601 41 VIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAA 120 (460)
Q Consensus 41 v~~~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~glG~ilgy~ig~i~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (460)
++.++++.++...+|+...++.+..-|.-.|....|. ++++++..++.-+. .........+-...
T Consensus 1 m~~v~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq-----~~aGv~~s~l~ii~----------~~~~~~~~~~a~~y 65 (309)
T PF01733_consen 1 MISVALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQ-----GLAGVIVSLLRIIT----------KASGSDVKTSAFIY 65 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhc-----cHHHHHHHHHHHHH----------HHhhhccchhhhhH
Q ss_pred HHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCcccchhhhhhcc
Q 012601 121 FLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISK 200 (460)
Q Consensus 121 f~i~~i~~~i~~~itl~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (460)
|.++.++.++|.+......+-+-.....+.+.+...+..+++.....++.+.++.
T Consensus 66 F~~a~~i~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 120 (309)
T PF01733_consen 66 FIIAVLIVILCIILYFILPRSPFYRYYLEREAKGDERETEEELSSDGEEESESRS------------------------- 120 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHhhhcccchhhhhhhhhhhccccccccc-------------------------
Q ss_pred cccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccccccceeecCCCCCCChhhhhHHHHHH
Q 012601 201 KAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVR 280 (460)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~s~~~mP~~l~~l~l~~f~~w~g~~~~~~y~t~~vg~~vf~~~p~~~~~~~~~y~~gv~ 280 (460)
+....+......+.+..++..=|..|..++..|+..+.-.. +|.+-...-......-.+..-
T Consensus 121 ------~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~~~f~vTl~------------~FP~it~~v~s~~~~~~~~~f 182 (309)
T PF01733_consen 121 ------EGTFENSKPQEENVFISFWVVLKKIWPYALSIFLVFFVTLS------------VFPGITSAVQSSNNPDWSSYF 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cccccccccccccccccHHHHHHHHHHHHHHHHHHHhheee------------eccceeeeeeccccCCCccHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhhhccccccCccccCCCCcchhHHHHHHHH
Q 012601 281 EGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (460)
Q Consensus 281 ~G~~~l~~~si~~~l~s~i~~~l~~riG~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (460)
.-....++|++.-.+.-.+..+..-+..+++...+..+.=.+-.-+..+.....++ +.+|+.+-+-+..++++
T Consensus 183 ~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~-------~~~~~~~~~d~~~~i~~ 255 (309)
T PF01733_consen 183 VPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRP-------RYLPVLFNSDAWFIILM 255 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhccc-------ccCCCcccchHHHHHHH
Q ss_pred HHhhhhhhhhcCccchhhhccccCCCCCcccchhhhHHHHHHHHHHHhhcc
Q 012601 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA 411 (460)
Q Consensus 361 ~~~Gi~~a~~~~vp~aLis~~~~~~~~~~G~~~Gi~n~~~~l~qil~~~~~ 411 (460)
.++|+..|=+.++......+.+++++++.+- .+++++..++=.+.+.+.
T Consensus 256 ~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG--~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 256 LLFGFTNGYLSTLAMMYAPKSVSPEERELAG--SVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -----------HHHH------------------------------------
T ss_pred HHHHHccchhhhceeeeCCCcCCHHHHHHHH--HHHHHHHHHHHHHHHHHH
No 289
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.41 E-value=7.3e+02 Score=26.74 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCc
Q 012601 284 FGLLLNSVVLGVSSFLIEPMCRWIGS 309 (460)
Q Consensus 284 ~~l~~~si~~~l~s~i~~~l~~riG~ 309 (460)
.+++.|.+.+.+++++..++-+.+|.
T Consensus 301 ~~i~~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 301 AAIILYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 46778999999999999999998865
Done!