Query 012602
Match_columns 460
No_of_seqs 215 out of 540
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzv_A STAM-binding protein; u 100.0 1.8E-33 6E-38 268.6 9.4 119 332-451 41-159 (211)
2 2znr_A AMSH-like protease; met 100.0 1.8E-32 6.2E-37 255.7 9.2 120 332-452 8-127 (178)
3 4b4t_V 26S proteasome regulato 99.9 1.5E-27 5.2E-32 239.5 14.6 123 332-458 24-152 (306)
4 2xze_A STAM-binding protein; h 99.9 2E-27 6.8E-32 215.2 11.5 108 5-112 13-121 (146)
5 2og4_A PRE-mRNA-splicing facto 99.9 2.3E-28 7.8E-33 237.3 5.6 114 332-449 37-153 (254)
6 2p8r_A PRP8, PRE-mRNA-splicing 99.9 1.8E-25 6.1E-30 219.0 6.3 112 332-449 38-156 (273)
7 2a9u_A Ubiquitin carboxyl-term 99.9 9.4E-25 3.2E-29 197.0 9.6 95 17-112 27-123 (144)
8 2kks_A Uncharacterized protein 99.8 6.7E-20 2.3E-24 164.9 11.4 109 334-450 1-112 (146)
9 2kcq_A MOV34/MPN/PAD-1 family; 99.8 2.7E-20 9.1E-25 168.8 8.2 108 335-450 1-114 (153)
10 3sbg_A PRE-mRNA-splicing facto 99.7 3E-18 1E-22 178.7 6.3 108 333-447 349-462 (565)
11 2o95_A 26S proteasome non-ATPa 99.7 2.1E-16 7.2E-21 147.3 11.3 116 332-452 7-131 (187)
12 1oi0_A AF2198, hypothetical pr 99.6 1.4E-16 4.7E-21 139.5 7.2 98 334-450 3-101 (124)
13 4e0q_A COP9 signalosome comple 99.6 4.4E-15 1.5E-19 133.5 10.5 118 332-454 5-129 (141)
14 4b4t_U RPN8, 26S proteasome re 98.8 4.2E-08 1.4E-12 99.5 12.6 114 332-450 5-127 (338)
15 2cpt_A SKD1 protein, vacuolar 96.7 0.0061 2.1E-07 52.8 8.7 72 27-102 13-84 (117)
16 4a5x_A MITD1, MIT domain-conta 96.6 0.0085 2.9E-07 49.1 8.4 69 30-103 14-82 (86)
17 1wfd_A Hypothetical protein 15 96.5 0.013 4.4E-07 48.6 9.1 72 28-104 11-82 (93)
18 2v6x_A Vacuolar protein sortin 96.3 0.017 5.7E-07 46.8 8.4 72 27-103 8-79 (85)
19 2w2u_A Hypothetical P60 katani 96.0 0.01 3.5E-07 48.4 5.9 72 24-100 11-82 (83)
20 2v6y_A AAA family ATPase, P60 95.8 0.015 5E-07 47.3 5.7 69 28-101 7-75 (83)
21 2ymb_A MITD1, MIT domain-conta 94.4 0.0068 2.3E-07 59.2 0.0 72 28-104 19-90 (257)
22 2qlc_A DNA repair protein RADC 85.4 2.8 9.5E-05 36.4 7.9 87 338-431 7-94 (126)
23 2zan_A Vacuolar protein sortin 85.4 0.16 5.6E-06 52.4 0.0 74 27-104 6-79 (444)
24 2rpa_A Katanin P60 ATPase-cont 46.2 63 0.0022 25.7 6.9 62 32-98 12-73 (78)
25 3h3m_A Flagellar protein FLIT; 35.7 1.3E+02 0.0043 25.9 7.7 75 33-112 32-106 (126)
26 1a17_A Serine/threonine protei 28.9 88 0.003 24.9 5.5 37 25-61 6-42 (166)
27 1wol_A ST0689, 122AA long cons 26.3 1.1E+02 0.0037 25.2 5.7 31 25-55 4-34 (122)
28 3nkz_A Flagellar protein FLIT; 26.2 1.6E+02 0.0054 25.1 6.7 76 32-112 21-96 (123)
29 2hsb_A Hypothetical UPF0332 pr 24.8 1.4E+02 0.0049 24.3 6.2 27 25-51 5-31 (126)
30 3n71_A Histone lysine methyltr 24.4 1.7E+02 0.0059 30.2 7.9 43 31-73 392-435 (490)
31 2xev_A YBGF; tetratricopeptide 24.1 2.2E+02 0.0076 21.5 6.9 30 33-62 40-69 (129)
32 1ufb_A TT1696 protein; structu 23.5 1.3E+02 0.0045 24.7 5.6 32 25-56 4-35 (127)
33 1elr_A TPR2A-domain of HOP; HO 22.6 1.3E+02 0.0044 22.5 5.1 31 31-61 3-33 (131)
34 2xcb_A PCRH, regulatory protei 22.6 2.1E+02 0.0073 22.8 6.7 26 36-61 56-81 (142)
35 1elw_A TPR1-domain of HOP; HOP 21.7 1.3E+02 0.0045 21.9 4.9 31 31-61 3-33 (118)
36 3sz7_A HSC70 cochaperone (SGT) 21.5 3.1E+02 0.01 22.2 7.7 53 32-92 79-133 (164)
37 3upv_A Heat shock protein STI1 21.4 1.3E+02 0.0046 23.1 5.1 31 31-61 3-33 (126)
38 1a17_A Serine/threonine protei 21.4 2.8E+02 0.0097 21.7 7.3 24 36-59 51-74 (166)
39 3rkv_A Putative peptidylprolyl 20.8 1E+02 0.0036 25.1 4.5 34 29-62 8-41 (162)
40 2v5f_A Prolyl 4-hydroxylase su 20.6 1.7E+02 0.006 22.6 5.6 25 37-61 51-75 (104)
41 3rkv_A Putative peptidylprolyl 20.4 1.3E+02 0.0043 24.6 4.9 30 32-61 63-92 (162)
42 4gcn_A Protein STI-1; structur 20.1 1.6E+02 0.0055 23.4 5.4 33 28-60 79-111 (127)
No 1
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=100.00 E-value=1.8e-33 Score=268.65 Aligned_cols=119 Identities=43% Similarity=0.751 Sum_probs=115.8
Q ss_pred CeEEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeCCeEEEEEEeecCCCCCCCccccCCHHHHHHHhhcCCCcccee
Q 012602 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGW 411 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~~~~~It~~~~p~q~~t~d~c~~~~E~ei~~~~~~~~l~~vGW 411 (460)
|++|.||.+++.+|+.||..||.+++|+||+|+|++.++.+.|+++|+|+|.+++++|++.+++++|++++.+++.+|||
T Consensus 41 lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~vGW 120 (211)
T 3rzv_A 41 LRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGW 120 (211)
T ss_dssp BCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEEEE
Confidence 89999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCcc
Q 012602 412 IHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGEI 451 (460)
Q Consensus 412 yHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~t 451 (460)
|||||+++||||++|++||++||.| +|++|||||||.++
T Consensus 121 yHSHP~~~~~pS~~Dl~tq~~~q~~-~~~~I~IVvsP~~~ 159 (211)
T 3rzv_A 121 IHTHPTQTAFLSSVDLHTHCSYQMM-LPESVAIVCSPKFQ 159 (211)
T ss_dssp EEECTTSCSCCCHHHHHHHHHHHHH-CTTCEEEEEETTTT
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHhc-CCCeEEEEEcCCCC
Confidence 9999999999999999999999999 99999999999965
No 2
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.97 E-value=1.8e-32 Score=255.66 Aligned_cols=120 Identities=44% Similarity=0.763 Sum_probs=115.7
Q ss_pred CeEEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeCCeEEEEEEeecCCCCCCCccccCCHHHHHHHhhcCCCcccee
Q 012602 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGW 411 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~~~~~It~~~~p~q~~t~d~c~~~~E~ei~~~~~~~~l~~vGW 411 (460)
+++|.||.+++.+|+.||..|+.+++|+||+|+|++..+.+.|+++|+++|.+++++|++.++++++++++++++.+|||
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vGw 87 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGW 87 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEEE
Confidence 78999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCccC
Q 012602 412 IHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGEIG 452 (460)
Q Consensus 412 yHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~t~ 452 (460)
|||||+++||||++|++||++||.| +|++|||||||.++.
T Consensus 88 yHSHP~~~~~pS~~Dv~tq~~yq~~-~~~~v~iIvsp~~~~ 127 (178)
T 2znr_A 88 IHTHPTQTAFLSSVDLHTHCSYQLM-LPEAIAIVCSPKHKD 127 (178)
T ss_dssp EEECSSSCSCCCHHHHHHHHHHHHH-CTTCEEEEEEGGGTE
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHhh-cCCEEEEEEcCCCCc
Confidence 9999999999999999999999999 999999999998753
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-27 Score=239.47 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=109.5
Q ss_pred CeEEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeCC-eEEEEEEeecCCCCCCCccccCCHHHHHHHh---h--cCC
Q 012602 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNR-KFYITALIIPKQESTSDSCQATNEEEIFEVQ---D--KRS 405 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~~-~~~It~~~~p~q~~t~d~c~~~~E~ei~~~~---~--~~~ 405 (460)
..+|.|++.++++|+.||+. +.+.||||+|+|.+.++ ++.|+++|..++++++++|++.+++...++. . +++
T Consensus 24 ~~~V~is~lallkm~~Ha~~--~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~ 101 (306)
T 4b4t_V 24 KETVYISSIALLKMLKHGRA--GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRD 101 (306)
T ss_dssp CCEEEECHHHHHHHHHHTCS--CSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeHHHHHHHHHHhcC--CCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCC
Confidence 68999999999999999998 67999999999997654 7999999999999999999988876543332 2 578
Q ss_pred CccceeeccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCccCCcccee
Q 012602 406 LFPLGWIHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGEIGRKRNAI 458 (460)
Q Consensus 406 l~~vGWyHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~t~~~~~~~ 458 (460)
+.+||||||||+++||||++|++||..||.| .+++||||+||.++.+ |++.
T Consensus 102 ~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~-~~~~V~lV~Dp~~t~~-G~~~ 152 (306)
T 4b4t_V 102 QMVVGWYHSHPGFGCWLSSVDVNTQKSFEQL-NSRAVAVVVDPIQSVK-GKVV 152 (306)
T ss_dssp CCCSEEEEECCSSSCCCCHHHHHHHHHHHHH-CSSCEEEEECSSSSSS-CSSC
T ss_pred cceeeEEecCCCCCCcCCHHHHHHHHHHHhc-CCCcEEEEECCCcCCC-Ccee
Confidence 9999999999999999999999999999999 9999999999999976 5543
No 4
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=99.94 E-value=2e-27 Score=215.23 Aligned_cols=108 Identities=24% Similarity=0.403 Sum_probs=96.8
Q ss_pred hhhhhHHHhhcCcccCCCCcHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHH
Q 012602 5 SEGINIAASAQRLDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLK 84 (460)
Q Consensus 5 ~~~~~l~~~a~~~evn~~iplr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~ 84 (460)
...-+|+++|.+|+||++|||++|||+|++|+++|.+|+++||+++|||+|+||++||+++||+||||++....++..+.
T Consensus 13 ~~i~~L~~~A~~~~v~~~i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l 92 (146)
T 2xze_A 13 DRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTV 92 (146)
T ss_dssp HHHHHHHHHHTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHH
T ss_pred cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999986645566666
Q ss_pred HHHHHH-HHHHHhhcHHHHHHHHHHHHhh
Q 012602 85 KKLLNA-LSELEELQPAVQQKINELNRKK 112 (460)
Q Consensus 85 ~~l~~v-l~~lE~LK~~L~~~Y~~~~~~~ 112 (460)
++++.+ ++++|.||+.|+++|+++++.+
T Consensus 93 ~~l~~~~~~~lE~LK~~L~~rY~~e~~~~ 121 (146)
T 2xze_A 93 KKLKEIAFPKAEELKAELLKRYTKEYTEY 121 (146)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 9999999999999999766544
No 5
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-28 Score=237.27 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=106.5
Q ss_pred CeEEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeC---CeEEEEEEeecCCCCCCCccccCCHHHHHHHhhcCCCcc
Q 012602 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFP 408 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~---~~~~It~~~~p~q~~t~d~c~~~~E~ei~~~~~~~~l~~ 408 (460)
.++++||.+++.+|+.+|..|| ||||+|+|+... +.+.|+++++|+|.||.++|++.++...+++++.++|.+
T Consensus 37 ~~t~vlPknLlkkFi~IAD~~T----q~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~ 112 (254)
T 2og4_A 37 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLEL 112 (254)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCEE
T ss_pred CcEEEcCHHHHHHHHHHhhccc----eEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchhhcCCEe
Confidence 5789999999999999999875 799999999953 478899999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCC
Q 012602 409 LGWIHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRG 449 (460)
Q Consensus 409 vGWyHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~ 449 (460)
||||||||+++||||++|||||++||.|.++++|||||+|.
T Consensus 113 LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft 153 (254)
T 2og4_A 113 LGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST 153 (254)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE
T ss_pred cceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 99999999999999999999999999972599999999975
No 6
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.91 E-value=1.8e-25 Score=218.99 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=101.3
Q ss_pred CeEEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeC---CeEEEEEEeecCCCCCCCccccCCHHHHHHHhhcCCCcc
Q 012602 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFP 408 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~---~~~~It~~~~p~q~~t~d~c~~~~E~ei~~~~~~~~l~~ 408 (460)
.++++||.+++.+|+.+|..|| ||||+|+|+... +.+.|+++++|+|.||.++|++.++...++++ ++|.+
T Consensus 38 ~~t~vlPknllkkFi~IADlrT----q~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe~ 111 (273)
T 2p8r_A 38 GYTYILPKNILKKFITISDLRT----QIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFEP 111 (273)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSEE
T ss_pred ccEEEecHHHHHHHHHHhhccc----eEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh--ccccc
Confidence 5789999999999999998865 899999999953 47899999999999999999999987777776 99999
Q ss_pred ceeeccCCCCCCCCChhHHhhhhhhccc---cCC-CceEEEecCC
Q 012602 409 LGWIHTHPTQSCFMSSIDVHTHYSYQVN---VVP-DARSCWKKRG 449 (460)
Q Consensus 409 vGWyHSHP~~t~flSsvDl~Tq~~yQ~m---~~p-e~iAIV~sP~ 449 (460)
||||||||+++||||++|||||++||.| ..+ ++|+|||+|.
T Consensus 112 LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft 156 (273)
T 2p8r_A 112 LGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT 156 (273)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE
T ss_pred cceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC
Confidence 9999999999999999999999999974 234 9999999974
No 7
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=99.91 E-value=9.4e-25 Score=197.03 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=86.0
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHH-HHHHHHHHHHHHH
Q 012602 17 LDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLY-LKKKLLNALSELE 95 (460)
Q Consensus 17 ~evn~~iplr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~-l~~~l~~vl~~lE 95 (460)
..+|.+||+++|||+|++|+++|.+|++|||+|+||||||||++|| ++||+||||+......+.. .+++++.||++||
T Consensus 27 ~~~d~~ipl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~-~kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE 105 (144)
T 2a9u_A 27 EVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVY-NLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAE 105 (144)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHhcCcchhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 6688889999999999999999999999999999999999999999 7999999999876555555 3688999999999
Q ss_pred hhcHHHHHHHHH-HHHhh
Q 012602 96 ELQPAVQQKINE-LNRKK 112 (460)
Q Consensus 96 ~LK~~L~~~Y~~-~~~~~ 112 (460)
+||+.|+++|++ +++.+
T Consensus 106 ~LK~~L~~rYe~~e~~~~ 123 (144)
T 2a9u_A 106 RLSESLKLRYEEAEVRKK 123 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999 66644
No 8
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.81 E-value=6.7e-20 Score=164.87 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=90.3
Q ss_pred EEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeCCeEEEEEEeecC-CCCCCCccccCCHHHH--HHHhhcCCCccce
Q 012602 334 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPK-QESTSDSCQATNEEEI--FEVQDKRSLFPLG 410 (460)
Q Consensus 334 ~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~~~~~It~~~~p~-q~~t~d~c~~~~E~ei--~~~~~~~~l~~vG 410 (460)
+|.|+..++.+|+.||.. +.+.|+||+|+|+...+.+.|++++..+ ...+++++.+..++.+ .+.++.+|+.+||
T Consensus 1 ml~i~~~~l~~i~~ha~~--~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~~g~~ivG 78 (146)
T 2kks_A 1 MITLTKKQMEEMLAHARQ--ALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRKNGWVMLG 78 (146)
T ss_dssp CEEEEHHHHHHHHHHHHH--HTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CEEECHHHHHHHHHHHHh--cCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHHCCCEEEE
Confidence 378999999999999999 5799999999999998889999988754 4566676666555432 3344678999999
Q ss_pred eeccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCc
Q 012602 411 WIHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGE 450 (460)
Q Consensus 411 WyHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~ 450 (460)
||||||+++||||++|++++ + .+++++|||++..
T Consensus 79 ~~HSHP~~~~~PS~~D~~~~-----~-~~~~~~lIvs~~~ 112 (146)
T 2kks_A 79 NFHSHPATPARPSAEDKRLA-----F-DPSLSYLIISLAE 112 (146)
T ss_dssp EEEEESSSCSSCCHHHHTTC-----C-SSSCEEEEEECSC
T ss_pred EEeCCCcCCCCCCHHHHHhh-----h-cCCCeEEEEEccC
Confidence 99999999999999999853 3 5889999999875
No 9
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.81 E-value=2.7e-20 Score=168.76 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=87.0
Q ss_pred EEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEe-CCeEEEEEEeecCCC--CC-CCccccCCHHH--HHHHhhcCCCcc
Q 012602 335 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-NRKFYITALIIPKQE--ST-SDSCQATNEEE--IFEVQDKRSLFP 408 (460)
Q Consensus 335 V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~-~~~~~It~~~~p~q~--~t-~d~c~~~~E~e--i~~~~~~~~l~~ 408 (460)
|.|+.+++.+|+.||+. +.+.|+||+|+|+.. ++++.|+.++..+.. ++ .+.+.+..++. +.+..+++|+.+
T Consensus 1 l~i~~~~l~~i~~ha~~--~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~i 78 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGAD--AYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDV 78 (153)
T ss_dssp CBCCHHHHHHHHHHHHH--HTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEE
T ss_pred CEeCHHHHHHHHHHHHh--cCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCeE
Confidence 46899999999999999 689999999999998 778999988765544 33 44555555443 344456789999
Q ss_pred ceeeccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCc
Q 012602 409 LGWIHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGE 450 (460)
Q Consensus 409 vGWyHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~ 450 (460)
||||||||+++||||++|+.++ + .+++++|||++.+
T Consensus 79 vG~yHSHP~~~~~PS~~D~~~~-----~-~~~~~~lIvs~~~ 114 (153)
T 2kcq_A 79 VGVYHSHPDHPARPSATDLEEA-----T-FPGFTYVIVSVRD 114 (153)
T ss_dssp EEEEEECSSSSSSCCHHHHHTC-----C-CTTSEEEEEEEET
T ss_pred EEEEeCCCCCCCCCCHHHHHhh-----h-cCCCeEEEEECCC
Confidence 9999999999999999999642 4 6899999999743
No 10
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3e-18 Score=178.74 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=89.9
Q ss_pred eEEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeC---CeEEEEEEeecCCCCCCCccccC--CHHHHHHHhhcCCCc
Q 012602 333 LQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDSCQAT--NEEEIFEVQDKRSLF 407 (460)
Q Consensus 333 ~~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~---~~~~It~~~~p~q~~t~d~c~~~--~E~ei~~~~~~~~l~ 407 (460)
..++||.+++.+|+..|..|| ||||+|+|+... +.+.|+++++|+|.|++++|++. ++.++| ++.++|.
T Consensus 349 ~tyVlPkNLLkKFI~IADlrT----QicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~--~~l~dLe 422 (565)
T 3sbg_A 349 NVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDL--PDTEGLE 422 (565)
T ss_dssp CEEEEEHHHHHHHHHHSCSSS----CCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTTS--TTCTTCE
T ss_pred cEEEccHHHHHHHHHHhhccc----eeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCccccc--cccccCE
Confidence 569999999999999998865 899999999973 46899999999999999999997 333333 3469999
Q ss_pred cceeeccCCCCCCCCChhHHhhhhhhccccC-CCceEEEec
Q 012602 408 PLGWIHTHPTQSCFMSSIDVHTHYSYQVNVV-PDARSCWKK 447 (460)
Q Consensus 408 ~vGWyHSHP~~t~flSsvDl~Tq~~yQ~m~~-pe~iAIV~s 447 (460)
+||||||||+++||||++|+|||++.-.- . ..+|-|+|+
T Consensus 423 ~LGWIHTqp~et~fLSs~Dl~THakl~~~-n~~~~I~itvs 462 (565)
T 3sbg_A 423 LLGWIHTQTEELKFMAASEVATHSKLFAD-KKRDCIDISIF 462 (565)
T ss_dssp EEEEEEEESSCCSSCCHHHHHHHHHHHSS-SCTTCEEEEEE
T ss_pred ecceeeecCCcccccCHHHHHHHHHHHHh-CCCCeEEEEEE
Confidence 99999999999999999999999985221 1 245666665
No 11
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.67 E-value=2.1e-16 Score=147.30 Aligned_cols=116 Identities=9% Similarity=0.123 Sum_probs=92.2
Q ss_pred CeEEEeCHHHHHHHHHHhhccC--CCCeeeEEEeeeeEeCCeEEEEEEeecCCCCCCCcc--ccCCHHHH---HHHhh--
Q 012602 332 PLQLHISTTMMDNFMKLAKSNT--DKNLETCGILAGSLKNRKFYITALIIPKQESTSDSC--QATNEEEI---FEVQD-- 402 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~nt--~~~~E~cGiL~G~~~~~~~~It~~~~p~q~~t~d~c--~~~~E~ei---~~~~~-- 402 (460)
+.+|.|++.++.+|+.||.... +.+.|+||+|+|+..++.+.|+++|..+..++.+.+ .+.+.+.. ++...
T Consensus 7 ~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 7 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred CCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 5789999999999999987631 258999999999999889999999987766554422 23333332 22222
Q ss_pred cCCCccceeeccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCccC
Q 012602 403 KRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGEIG 452 (460)
Q Consensus 403 ~~~l~~vGWyHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~t~ 452 (460)
..++.+||||||||.. |..|+.+|..||.+ .+.+|+||+||.++.
T Consensus 87 ~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~-~~~~v~Livd~~~~~ 131 (187)
T 2o95_A 87 NARERIVGWYHTGPKL----HKNDIAINELMKRY-CPNSVLVIIDVKPKD 131 (187)
T ss_dssp SSSCEEEEEEECCSSC----CTTHHHHHHHHTTT-CTTCEEEEECCCTTC
T ss_pred CCCCCEEEEEcCCCcC----CcccHHHHHHHHhc-CCCCEEEEECCCCCC
Confidence 5689999999999987 78999999999998 899999999998764
No 12
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.65 E-value=1.4e-16 Score=139.54 Aligned_cols=98 Identities=21% Similarity=0.172 Sum_probs=73.3
Q ss_pred EEEeCHHHHHHHHHHhhccCCCCeeeEEEeeeeEeCCeEEEEEEeecCCCCCCCccccCCHHHHH-HHhhcCCCccceee
Q 012602 334 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIF-EVQDKRSLFPLGWI 412 (460)
Q Consensus 334 ~V~is~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~~~~~It~~~~p~q~~t~d~c~~~~E~ei~-~~~~~~~l~~vGWy 412 (460)
+|.|+..++.+|+.||+. +.+.|+||+|+|+.. .|++++..+..+++. ...| ..++.+++.+||||
T Consensus 3 ~v~i~~~~l~~i~~ha~~--~~P~E~cGlL~g~~~----~v~~~~~~p~~~~~~-------~~~f~~~~~~~~~~ivG~~ 69 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKS--AHPDEFIALLSGSKD----VMDELIFLPFVSGSV-------SAVIHLDMLPIGMKVFGTV 69 (124)
T ss_dssp SCEECHHHHHHHHHHHHH--HTTSCCEEEEEESTT----EECEEEECCCCC--------------------CCCEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHh--cCCCeeEEEEecccC----EEEEEEECCCCCCCc-------CceeeeeeccCCCEEEEEE
Confidence 488999999999999999 789999999999973 777777544444331 1112 13557899999999
Q ss_pred ccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCc
Q 012602 413 HTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGE 450 (460)
Q Consensus 413 HSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~ 450 (460)
||||+.+|+||.+|+.++. .++.+.||+++..
T Consensus 70 HSHP~~~~~PS~~D~~~~~------~~~~~~lIvs~~~ 101 (124)
T 1oi0_A 70 HSHPSPSCRPSEEDLSLFT------RFGKYHIIVCYPY 101 (124)
T ss_dssp EEESSSCCSCCHHHHHHHH------HSCSEEEEEETTC
T ss_pred EECcCCCCccCHHHHHhhh------cCCCEEEEEEccC
Confidence 9999999999999998632 4678889988654
No 13
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.59 E-value=4.4e-15 Score=133.48 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=87.3
Q ss_pred CeEEEeCHHHHHHHHHHhhc---cCCCCeeeEEEeeeeEeCCeEEEEEEeecCCCCCCCccccCCH--HHHHHHhh--cC
Q 012602 332 PLQLHISTTMMDNFMKLAKS---NTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNE--EEIFEVQD--KR 404 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~---nt~~~~E~cGiL~G~~~~~~~~It~~~~p~q~~t~d~c~~~~E--~ei~~~~~--~~ 404 (460)
-.+|.|.+.++.+++.|+.. +.+.+.+++|+|+|...++.+.|+++|..+.+++++.+....| +++++... ..
T Consensus 5 ~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v~~ 84 (141)
T 4e0q_A 5 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVFS 84 (141)
T ss_dssp CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHHST
T ss_pred cEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHhCC
Confidence 46799999999999999965 2235789999999999999999999999887766665533322 12222222 57
Q ss_pred CCccceeeccCCCCCCCCChhHHhhhhhhccccCCCceEEEecCCccCCc
Q 012602 405 SLFPLGWIHTHPTQSCFMSSIDVHTHYSYQVNVVPDARSCWKKRGEIGRK 454 (460)
Q Consensus 405 ~l~~vGWyHSHP~~t~flSsvDl~Tq~~yQ~m~~pe~iAIV~sP~~t~~~ 454 (460)
++.+|||||||| +++..|+.+|..|+.. .+..|+||+||..+..+
T Consensus 85 ~e~iVGWY~s~~----~~~~~d~~i~~~~~~~-~~~pV~L~~Dp~~~~~g 129 (141)
T 4e0q_A 85 DLDFIGWYTTGD----NPTADDIKIQRQIAAI-NECPIMLQLNPLSRSVD 129 (141)
T ss_dssp TCEEEEEEEEEC-----------CHHHHHHHT-TCCCEEEEESCSCCCCT
T ss_pred CccEEEEEeCCC----CCCcchHHHHHHHHHH-CCCCEEEEECCCccCCC
Confidence 899999999998 4889999999999998 89999999999987643
No 14
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=4.2e-08 Score=99.52 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=81.9
Q ss_pred CeEEEeCHHHHHHHHHHhhc-cCCCCeeeEEEeeeeEeCCeEEEEEEeecCCCCCCCc--cccCCHHH---HHHHh--hc
Q 012602 332 PLQLHISTTMMDNFMKLAKS-NTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDS--CQATNEEE---IFEVQ--DK 403 (460)
Q Consensus 332 ~~~V~is~~~~~~fl~hA~~-nt~~~~E~cGiL~G~~~~~~~~It~~~~p~q~~t~d~--c~~~~E~e---i~~~~--~~ 403 (460)
...|.|-+.++..++.|+.. ....+-.|+|.|+|...++.+.|+++|..+.+.+.+. ....+.+. +++.. ..
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 46799999999999999754 2244568999999999999999999998654332222 22223332 23222 25
Q ss_pred CCCccceeeccCCCCCCCCChhHHhhhhhhccccC-CCceEEEecCCc
Q 012602 404 RSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQVNVV-PDARSCWKKRGE 450 (460)
Q Consensus 404 ~~l~~vGWyHSHP~~t~flSsvDl~Tq~~yQ~m~~-pe~iAIV~sP~~ 450 (460)
..+.+||||||+|. ++..|+..|..|+.. . +..|.+++++..
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~-~~~~pi~l~~d~~~ 127 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKY-TQNNPLLLIVDVKQ 127 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGG-CCSCCCEEEECSCC
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhc-cCCCcEEEEecCCC
Confidence 78999999999874 677888899988886 5 355667777653
No 15
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=96.70 E-value=0.0061 Score=52.79 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 012602 27 YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQ 102 (460)
Q Consensus 27 ~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~ 102 (460)
.++.-|..++++|--+-..||++.||.+|..=+.+|+.-|..- ......|..++.++..-|.++|.||..|+
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e----~~~~~~k~~lr~K~~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYE----AQGDKAKQSIRAKCTEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999998765431 11335578899999999999999999775
No 16
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=96.59 E-value=0.0085 Score=49.09 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 012602 30 RIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (460)
Q Consensus 30 Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~~ 103 (460)
-.|.+++++|--+..+||++.|+.+|..=+.+|+.-+..-+ .+..|..++.++..-+.++|+||..|++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~-----d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999987765432 2355778899999999999999998864
No 17
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=96.51 E-value=0.013 Score=48.59 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 012602 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (460)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~~~ 104 (460)
++..|.+++++|--+...||++.||.+|..=+.+|+.-|..-+ .+..|..++.++.+-+.++|+||..|+..
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~-----~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK-----ESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5668899999999999999999999999999999987664322 23567789999999999999999998743
No 18
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.017 Score=46.84 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 012602 27 YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (460)
Q Consensus 27 ~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~~ 103 (460)
.++.-|..++++|--....||++.|+-+|..=+.+|+.-+..=+ .+..|..++.++..-+.++|.||..|++
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~-----~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEK-----NPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999877663211 3456778999999999999999998864
No 19
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=96.04 E-value=0.01 Score=48.35 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHH
Q 012602 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPA 100 (460)
Q Consensus 24 plr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~ 100 (460)
|-..++..|.+++++|--+-+.||++.||.+|..=+.+|+.-|..=||- ..|..++.++..-+.++|+||..
T Consensus 11 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~-----~~k~~ir~K~~eY~~RAE~LK~~ 82 (83)
T 2w2u_A 11 AQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDG-----STAAIYEQMINEYKRRIEVLKEL 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTS-----STHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556899999999999999999999999999999999887665432322 34667889999999999999864
No 20
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=95.75 E-value=0.015 Score=47.27 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHH
Q 012602 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAV 101 (460)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L 101 (460)
++..|..++++|--+-+.||++.||.+|..=+.+|+.-|..-|+- ..|..++.++..-+.++|+||..|
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~-----~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPES-----VARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTC-----TTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999999999887665432322 346788899999999999999866
No 21
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=94.45 E-value=0.0068 Score=59.23 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 012602 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (460)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~~~ 104 (460)
+..+|.+++++|--+.++||++.||.+|..=+.+++.-+..-+ .+..|..++.++.+-+.++|+||..|+++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~-----d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~ 90 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQE 90 (257)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999999999987775433 23457788899999999999999999864
No 22
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=85.41 E-value=2.8 Score=36.40 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHhhccCCCCeeeEEEeeeeEeCCeEEEEEEeecCCCCCCCccccCCHHHHHHHhhcCCCccceeeccCCC
Q 012602 338 STTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPT 417 (460)
Q Consensus 338 s~~~~~~fl~hA~~nt~~~~E~cGiL~G~~~~~~~~It~~~~p~q~~t~d~c~~~~E~ei~~~~~~~~l~~vGWyHSHP~ 417 (460)
+++....++..... ..+.|...+| .++...-.|....+. .||-+.+.. .-.++|...-..+---|...|-||+
T Consensus 7 s~~~v~~~l~~~l~--~~~~E~f~vl--~Ld~~n~li~~~~l~--~Gt~~~~~v-~pRei~~~Al~~~A~~vIl~HNHPS 79 (126)
T 2qlc_A 7 GARDVFEYMKGRIP--DETKEHLFVL--FLSTKNQILRHETIT--IGTLTASLI-HPREIFKAAIRESAHSIILVHNHPS 79 (126)
T ss_dssp SHHHHHHHHTTCCS--CTTSCEEEEE--EECTTCBEEEEEEEE--ESSCCGGGC-CHHHHHHHHHHTTCSEEEEEEECSS
T ss_pred CHHHHHHHHHHHhC--cCCCeEEEEE--EEcCCCCEEEEEEec--CCCCCcEee-cHHHHHHHHHHcCCcEEEEEecCCC
Confidence 44455556555444 4678887777 454432233332222 344444333 3467888888888888999999999
Q ss_pred CCCCCChhHHh-hhh
Q 012602 418 QSCFMSSIDVH-THY 431 (460)
Q Consensus 418 ~t~flSsvDl~-Tq~ 431 (460)
..+.||.-|+. |..
T Consensus 80 G~~~PS~~D~~~T~~ 94 (126)
T 2qlc_A 80 GDVQPSNADKQVTSI 94 (126)
T ss_dssp SCCSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 99999999987 443
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.38 E-value=0.16 Score=52.42 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 012602 27 YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (460)
Q Consensus 27 ~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~~~ 104 (460)
.|+..|.+++++|--+.+.||++.||.+|..-+.+++.-+.. .......+..++.++..-+.++|.||..|++.
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~----e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~ 79 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKY----EAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKK 79 (444)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh----hccChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999999999999999988766532 11122336678888999999999999998643
No 24
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=46.23 E-value=63 Score=25.65 Aligned_cols=62 Identities=8% Similarity=-0.059 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhc
Q 012602 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQ 98 (460)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK 98 (460)
-.+-++.|+-|.-.||++.|=++|--.+..+-..|..-. .+..|..+..-.+++-+|.|..|
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~-----d~~~r~kW~~~~~ei~~E~~~Vk 73 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVK-----DTHLRQKWQQVWQEINVEAKQVK 73 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHhHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999987777644444432 34566666555555556665554
No 25
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=35.68 E-value=1.3e+02 Score=25.94 Aligned_cols=75 Identities=12% Similarity=0.001 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhh
Q 012602 33 DNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQKINELNRKK 112 (460)
Q Consensus 33 ~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~~~Y~~~~~~~ 112 (460)
..|+.-| +.||++..--+=..|+.|| +.|...+.-.......+.....-++.+|..=-++|..+..+-++..+..
T Consensus 32 ~~ML~aA----~~gdWD~Lv~lE~~y~~lV-e~L~~~~~~~~l~~~~r~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li 106 (126)
T 3h3m_A 32 SRMLAAA----NASNWDLVLNHGQEYVCLV-ERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLL 106 (126)
T ss_dssp HHHHHHH----HTTCHHHHHHHHHHHHHHH-HHHHHHCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH----HHCcHHHHHHHHHHHHHHH-HHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455555 8999999999999999998 7775432111122344444444566666555566777777777766533
No 26
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=28.89 E-value=88 Score=24.87 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012602 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (460)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (460)
.....+.+..++..|.+|+..||++.|.-+|.+-+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 42 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL 42 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999998887665
No 27
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=26.25 E-value=1.1e+02 Score=25.17 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHH
Q 012602 25 LRYYYRIADNILKQADIFREEKNIIDLYVML 55 (460)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily 55 (460)
.+.|++.|..-++.|...++.|++..|-...
T Consensus 4 ~~~wl~~A~~dL~~A~~~~~~g~y~~a~f~a 34 (122)
T 1wol_A 4 VEDWIKQAERDLEEARYAKSGGYYELACFLS 34 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4679999999999999999999999877666
No 28
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=26.20 E-value=1.6e+02 Score=25.10 Aligned_cols=76 Identities=20% Similarity=0.146 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 012602 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQKINELNRK 111 (460)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpdyk~~~~~~k~~l~~~l~~vl~~lE~LK~~L~~~Y~~~~~~ 111 (460)
...|+.-| +.||++..--+=..|+.|| +.|...+.--......++....-++.+|..=-++|..+..+-++..+.
T Consensus 21 S~~ML~aA----~~gdWD~Lv~lE~~y~~lV-e~L~~~~~~~~ls~~~~~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~l 95 (123)
T 3nkz_A 21 SEQMLVLA----TEGNWDALVDLEMTYLKAV-ESTANITISSCSSLMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSDL 95 (123)
T ss_dssp HHHHHHHH----TTSCTTHHHHHHHHHHHHH-HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHCcHHHHHHHHHHHHHHH-HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34555555 8999999999999999998 777553211112234444444556666655555677777777776653
Q ss_pred h
Q 012602 112 K 112 (460)
Q Consensus 112 ~ 112 (460)
.
T Consensus 96 i 96 (123)
T 3nkz_A 96 V 96 (123)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=24.82 E-value=1.4e+02 Score=24.30 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhH
Q 012602 25 LRYYYRIADNILKQADIFREEKNIIDL 51 (460)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~A 51 (460)
.+.|++-|..-|+.|+..+++|++..|
T Consensus 5 ~~~~l~~A~~~L~~A~~~~~~g~y~~a 31 (126)
T 2hsb_A 5 LELRIRKAEKLVQDAKKEFEMGLYERC 31 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467999999999999999999999877
No 30
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=24.37 E-value=1.7e+02 Score=30.24 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccC-CCCcccc
Q 012602 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETI-PCHRDYL 73 (460)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~LvlekL-pkHpdyk 73 (460)
+|..+...|.+|..-|+++.|=-||-|=+.+....| +.||+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 677888899999999999999999999998886666 4598775
No 31
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=24.07 E-value=2.2e+02 Score=21.50 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 012602 33 DNILKQADIFREEKNIIDLYVMLLRFSSLV 62 (460)
Q Consensus 33 ~~llr~A~iy~~egn~e~AYily~Ry~~Lv 62 (460)
..++..|.+|.+.|+++.|--.|.+.+.+.
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 344567888999999999999999988764
No 32
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=23.51 E-value=1.3e+02 Score=24.72 Aligned_cols=32 Identities=13% Similarity=-0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Q 012602 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLL 56 (460)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily~ 56 (460)
.+.|++.|..-++.|...++.|++..|-....
T Consensus 4 ~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~ 35 (127)
T 1ufb_A 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQ 35 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 46799999999999999999999987665543
No 33
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=22.62 E-value=1.3e+02 Score=22.49 Aligned_cols=31 Identities=10% Similarity=-0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012602 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (460)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (460)
.+..++..|.+|...|+++.|.-+|.+-+.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 33 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL 33 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4667788899999999999999988887665
No 34
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=22.56 E-value=2.1e+02 Score=22.76 Aligned_cols=26 Identities=4% Similarity=-0.277 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHH
Q 012602 36 LKQADIFREEKNIIDLYVMLLRFSSL 61 (460)
Q Consensus 36 lr~A~iy~~egn~e~AYily~Ry~~L 61 (460)
+..|.+|.+.|+++.|--.|-+-+.+
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44577777778888877777765544
No 35
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=21.67 E-value=1.3e+02 Score=21.90 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012602 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (460)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (460)
.+..++..|..|...|+++.|.-+|.+-+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 33 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL 33 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4567888999999999999999988886654
No 36
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=21.50 E-value=3.1e+02 Score=22.20 Aligned_cols=53 Identities=6% Similarity=-0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcc--cccccHHHHHHHHHHHHHHHH
Q 012602 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRD--YLASFKSQKLYLKKKLLNALS 92 (460)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~LvlekLpkHpd--yk~~~~~~k~~l~~~l~~vl~ 92 (460)
..-++..|.+|.+.|+++.|.-.|.+.+.+. |.+++ ++ .....+++++.+...
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~----~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAE----GNGGSDAMK----RGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----SSSCCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCchHHHHH----HHHHHHHHHHHHHHh
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.44 E-value=1.3e+02 Score=23.11 Aligned_cols=31 Identities=3% Similarity=-0.062 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012602 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (460)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (460)
.+..+...|..|++.|+++.|--+|.+-+.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 33 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4677889999999999999999998886665
No 38
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=21.41 E-value=2.8e+02 Score=21.70 Aligned_cols=24 Identities=4% Similarity=-0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHH
Q 012602 36 LKQADIFREEKNIIDLYVMLLRFS 59 (460)
Q Consensus 36 lr~A~iy~~egn~e~AYily~Ry~ 59 (460)
+..|.+|...|+++.|.-++.+-+
T Consensus 51 ~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 51 GNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555554444433
No 39
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=20.76 E-value=1e+02 Score=25.13 Aligned_cols=34 Identities=3% Similarity=-0.001 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 012602 29 YRIADNILKQADIFREEKNIIDLYVMLLRFSSLV 62 (460)
Q Consensus 29 ~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv 62 (460)
+..+..+...|..|++.|+++.|--.|.+-+.++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~ 41 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRL 41 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999988876
No 40
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=20.61 E-value=1.7e+02 Score=22.62 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=19.9
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHH
Q 012602 37 KQADIFREEKNIIDLYVMLLRFSSL 61 (460)
Q Consensus 37 r~A~iy~~egn~e~AYily~Ry~~L 61 (460)
.-|..|++-||++.|.-++.+-+.|
T Consensus 51 ~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 51 YLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc
Confidence 5578889999999999888875544
No 41
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=20.35 E-value=1.3e+02 Score=24.61 Aligned_cols=30 Identities=0% Similarity=-0.158 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012602 32 ADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (460)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (460)
+.-++..|.+|.+.|+++.|--.+.+-+.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 344566788899999999998887776655
No 42
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=20.13 E-value=1.6e+02 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 012602 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSS 60 (460)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~ 60 (460)
|...|..+.+.+.+|...|+++.|--.|-+-+.
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677788889999999999999888877554
Done!