Query 012606
Match_columns 460
No_of_seqs 324 out of 2249
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03910 D-cysteine desulfhydr 100.0 5.1E-54 1.1E-58 436.5 32.2 312 77-445 12-330 (331)
2 TIGR01275 ACC_deam_rel pyridox 100.0 4.8E-53 1E-57 425.7 31.4 307 76-443 3-310 (311)
3 TIGR01274 ACC_deam 1-aminocycl 100.0 1.6E-52 3.5E-57 426.5 31.5 310 78-443 12-333 (337)
4 PRK12390 1-aminocyclopropane-1 100.0 2.2E-52 4.7E-57 425.5 29.8 310 78-444 13-335 (337)
5 COG2515 Acd 1-aminocyclopropan 100.0 2.4E-52 5.3E-57 404.6 24.3 317 64-444 4-323 (323)
6 PRK14045 1-aminocyclopropane-1 100.0 1.9E-50 4.1E-55 410.0 31.0 307 77-445 18-326 (329)
7 cd06449 ACCD Aminocyclopropane 100.0 3.2E-50 7E-55 404.6 30.8 298 81-433 1-307 (307)
8 PRK04346 tryptophan synthase s 100.0 4E-50 8.7E-55 414.1 29.8 351 35-442 10-391 (397)
9 PRK13028 tryptophan synthase s 100.0 1.6E-49 3.5E-54 410.3 30.7 351 32-442 11-395 (402)
10 COG0133 TrpB Tryptophan syntha 100.0 1.5E-49 3.2E-54 385.5 20.5 352 33-444 6-390 (396)
11 PLN02618 tryptophan synthase, 100.0 2.9E-48 6.2E-53 401.2 28.7 356 35-443 18-405 (410)
12 PRK07591 threonine synthase; V 100.0 9.6E-48 2.1E-52 401.7 28.8 335 35-440 39-397 (421)
13 TIGR00263 trpB tryptophan synt 100.0 1.2E-46 2.5E-51 389.4 29.5 344 37-440 4-381 (385)
14 PRK13803 bifunctional phosphor 100.0 1.6E-46 3.6E-51 407.6 31.1 358 32-448 220-608 (610)
15 PRK13802 bifunctional indole-3 100.0 2.9E-46 6.2E-51 405.7 32.3 356 34-441 277-670 (695)
16 cd06448 L-Ser-dehyd Serine deh 100.0 2.4E-46 5.1E-51 377.9 27.7 291 80-441 1-310 (316)
17 PRK06110 hypothetical protein; 100.0 3.1E-46 6.7E-51 378.1 26.0 290 79-442 20-314 (322)
18 PLN02550 threonine dehydratase 100.0 3.8E-46 8.2E-51 398.6 27.6 296 78-443 107-406 (591)
19 PRK06381 threonine synthase; V 100.0 1.3E-45 2.9E-50 372.9 30.0 291 79-435 14-319 (319)
20 PRK08197 threonine synthase; V 100.0 8.9E-46 1.9E-50 384.3 29.0 332 36-436 29-382 (394)
21 PRK08526 threonine dehydratase 100.0 4.1E-46 8.9E-51 386.9 26.4 297 79-447 19-319 (403)
22 PRK12483 threonine dehydratase 100.0 6.1E-46 1.3E-50 394.5 28.2 299 79-447 36-338 (521)
23 COG1171 IlvA Threonine dehydra 100.0 2.6E-46 5.7E-51 374.3 23.6 298 79-447 24-327 (347)
24 PRK07048 serine/threonine dehy 100.0 4.9E-46 1.1E-50 376.4 25.5 291 79-442 23-317 (321)
25 TIGR01124 ilvA_2Cterm threonin 100.0 1.4E-45 3E-50 391.7 28.0 298 79-447 16-318 (499)
26 PRK07476 eutB threonine dehydr 100.0 7.4E-46 1.6E-50 375.3 24.5 286 79-440 18-312 (322)
27 PRK06260 threonine synthase; V 100.0 2.1E-45 4.5E-50 381.9 26.6 327 36-440 26-374 (397)
28 PLN02970 serine racemase 100.0 2.9E-45 6.3E-50 371.8 26.2 294 79-444 26-326 (328)
29 PRK06382 threonine dehydratase 100.0 2.7E-45 5.9E-50 381.9 26.7 297 79-448 24-324 (406)
30 TIGR02991 ectoine_eutB ectoine 100.0 9.9E-45 2.1E-49 366.2 29.2 286 79-440 18-311 (317)
31 PRK06352 threonine synthase; V 100.0 2.2E-45 4.8E-50 375.8 24.4 291 77-441 25-325 (351)
32 PRK08329 threonine synthase; V 100.0 2.6E-45 5.6E-50 374.8 24.8 307 36-434 22-343 (347)
33 PRK06815 hypothetical protein; 100.0 6.2E-45 1.3E-49 367.8 26.2 288 79-442 19-314 (317)
34 PRK09224 threonine dehydratase 100.0 9E-45 1.9E-49 386.6 28.0 298 79-447 19-321 (504)
35 TIGR02079 THD1 threonine dehyd 100.0 7E-45 1.5E-49 378.8 26.6 296 79-445 15-316 (409)
36 PRK08638 threonine dehydratase 100.0 1E-44 2.2E-49 368.2 26.4 296 79-445 26-325 (333)
37 cd01562 Thr-dehyd Threonine de 100.0 9.4E-45 2E-49 363.7 24.9 285 79-436 16-304 (304)
38 PRK08198 threonine dehydratase 100.0 1.6E-44 3.6E-49 376.1 27.4 291 79-442 21-315 (404)
39 COG0031 CysK Cysteine synthase 100.0 6.5E-45 1.4E-49 358.3 22.9 283 79-446 10-299 (300)
40 TIGR01127 ilvA_1Cterm threonin 100.0 1.4E-44 3.1E-49 373.7 25.3 288 81-441 1-292 (380)
41 TIGR01136 cysKM cysteine synth 100.0 1.4E-44 3.1E-49 362.3 24.1 277 79-433 6-289 (299)
42 PRK06608 threonine dehydratase 100.0 4.1E-44 8.9E-49 364.4 27.5 293 79-445 22-320 (338)
43 PRK08639 threonine dehydratase 100.0 2E-44 4.4E-49 376.9 25.8 298 79-447 24-329 (420)
44 PRK05638 threonine synthase; V 100.0 4.9E-44 1.1E-48 376.3 28.0 322 35-436 21-358 (442)
45 PRK10717 cysteine synthase A; 100.0 3.1E-44 6.7E-49 364.7 24.8 288 79-435 12-310 (330)
46 cd01561 CBS_like CBS_like: Thi 100.0 4.6E-44 1E-48 357.2 25.3 279 79-433 1-285 (291)
47 PRK06450 threonine synthase; V 100.0 1.4E-43 3E-48 360.3 27.5 302 36-436 25-337 (338)
48 TIGR01139 cysK cysteine syntha 100.0 7E-44 1.5E-48 357.1 24.5 277 79-433 6-288 (298)
49 PRK07409 threonine synthase; V 100.0 6.9E-44 1.5E-48 365.2 24.8 296 77-445 28-333 (353)
50 PRK06721 threonine synthase; R 100.0 1.4E-43 3.1E-48 362.6 26.0 285 77-434 25-317 (352)
51 cd01563 Thr-synth_1 Threonine 100.0 9.5E-44 2E-48 360.0 24.0 290 77-433 19-320 (324)
52 PRK07334 threonine dehydratase 100.0 3E-43 6.6E-48 366.3 27.6 289 79-444 22-316 (403)
53 cd06446 Trp-synth_B Tryptophan 100.0 3.2E-43 6.8E-48 361.7 27.2 310 70-438 24-363 (365)
54 PRK08246 threonine dehydratase 100.0 4.9E-43 1.1E-47 352.9 27.5 285 79-439 22-308 (310)
55 PLN02569 threonine synthase 100.0 9.8E-43 2.1E-47 367.8 30.4 334 35-439 70-444 (484)
56 PRK08813 threonine dehydratase 100.0 1.1E-42 2.4E-47 353.7 28.9 279 79-444 38-319 (349)
57 PRK02991 D-serine dehydratase; 100.0 1.2E-42 2.6E-47 363.3 28.7 309 78-447 73-436 (441)
58 PLN00011 cysteine synthase 100.0 5.1E-43 1.1E-47 354.7 24.7 285 78-439 15-307 (323)
59 PLN02356 phosphateglycerate ki 100.0 7.3E-43 1.6E-47 361.2 26.1 304 79-432 52-391 (423)
60 PLN02556 cysteine synthase/L-3 100.0 7.8E-43 1.7E-47 358.2 25.7 283 78-437 57-347 (368)
61 PLN03013 cysteine synthase 100.0 2.6E-42 5.5E-47 357.3 29.3 290 78-451 121-418 (429)
62 PRK08206 diaminopropionate amm 100.0 1.1E-42 2.3E-47 361.3 26.0 299 79-442 43-391 (399)
63 PRK11761 cysM cysteine synthas 100.0 2.8E-42 6.2E-47 345.2 26.3 267 79-433 11-284 (296)
64 TIGR01138 cysM cysteine syntha 100.0 6E-42 1.3E-46 342.0 26.6 267 79-433 7-280 (290)
65 PLN02565 cysteine synthase 100.0 5.2E-42 1.1E-46 346.9 25.2 280 79-436 14-302 (322)
66 TIGR01137 cysta_beta cystathio 100.0 3.2E-42 6.8E-47 363.8 24.3 283 79-433 10-301 (454)
67 TIGR01415 trpB_rel pyridoxal-p 100.0 1.6E-41 3.4E-46 353.4 28.7 323 77-439 65-411 (419)
68 TIGR03844 cysteate_syn cysteat 100.0 8.8E-42 1.9E-46 353.6 25.4 322 36-434 24-379 (398)
69 TIGR01747 diampropi_NH3ly diam 100.0 2.2E-41 4.7E-46 348.5 28.0 298 79-441 21-371 (376)
70 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.2E-41 4.7E-46 352.7 28.1 310 77-444 67-430 (431)
71 cd06447 D-Ser-dehyd D-Serine d 100.0 2.1E-41 4.6E-46 350.1 26.3 297 78-435 50-401 (404)
72 KOG1251 Serine racemase [Signa 100.0 3E-42 6.4E-47 323.9 18.0 288 79-439 24-315 (323)
73 PRK12391 tryptophan synthase s 100.0 8.7E-41 1.9E-45 348.3 30.7 324 77-440 74-421 (427)
74 TIGR00260 thrC threonine synth 100.0 1E-41 2.2E-46 345.7 22.8 289 77-434 20-323 (328)
75 cd00640 Trp-synth-beta_II Tryp 100.0 1.6E-40 3.4E-45 323.2 27.7 240 81-433 1-244 (244)
76 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.8E-40 3.9E-45 343.8 28.8 297 79-440 40-389 (396)
77 PF00291 PALP: Pyridoxal-phosp 100.0 2E-40 4.4E-45 331.5 24.4 290 78-432 5-306 (306)
78 KOG1250 Threonine/serine dehyd 100.0 2.4E-40 5.3E-45 329.3 21.4 289 77-440 63-359 (457)
79 KOG1395 Tryptophan synthase be 100.0 5.3E-39 1.2E-43 314.7 16.9 348 37-439 77-453 (477)
80 KOG1252 Cystathionine beta-syn 100.0 9.9E-39 2.1E-43 313.4 11.4 296 65-448 42-348 (362)
81 COG0498 ThrC Threonine synthas 100.0 3.9E-35 8.4E-40 302.0 25.0 295 77-439 73-378 (411)
82 KOG1481 Cysteine synthase [Ami 100.0 2.6E-35 5.7E-40 281.5 16.4 302 79-451 48-369 (391)
83 COG1350 Predicted alternative 99.9 5.4E-24 1.2E-28 207.9 21.1 316 77-440 75-422 (432)
84 PRK09225 threonine synthase; V 99.9 2.3E-23 5E-28 219.1 25.6 279 108-440 97-418 (462)
85 cd01560 Thr-synth_2 Threonine 99.9 8E-23 1.7E-27 215.1 25.5 280 107-439 95-421 (460)
86 COG3048 DsdA D-serine dehydrat 99.6 2.1E-14 4.4E-19 139.9 18.1 292 107-447 101-441 (443)
87 PF04127 DFP: DNA / pantothena 64.1 12 0.00027 35.0 5.0 27 150-176 27-53 (185)
88 PF01210 NAD_Gly3P_dh_N: NAD-d 55.1 17 0.00037 32.7 4.2 28 147-176 5-32 (157)
89 COG2242 CobL Precorrin-6B meth 55.1 33 0.00071 32.4 6.0 37 292-330 32-68 (187)
90 PF00070 Pyr_redox: Pyridine n 53.1 39 0.00085 26.4 5.5 33 144-178 2-34 (80)
91 cd01011 nicotinamidase Nicotin 52.2 36 0.00078 31.9 6.0 45 133-177 130-174 (196)
92 PF11814 DUF3335: Peptidase_C3 51.7 18 0.00039 34.6 3.8 39 139-177 40-78 (207)
93 TIGR03669 urea_ABC_arch urea A 45.9 3.5E+02 0.0077 27.8 12.9 45 275-326 176-220 (374)
94 cd01012 YcaC_related YcaC rela 45.7 74 0.0016 28.5 6.8 43 136-178 83-125 (157)
95 PRK11609 nicotinamidase/pyrazi 44.9 86 0.0019 29.5 7.4 42 136-177 137-178 (212)
96 COG2216 KdpB High-affinity K+ 41.0 56 0.0012 35.6 5.8 93 79-201 426-519 (681)
97 PRK15408 autoinducer 2-binding 40.6 4.1E+02 0.0088 27.0 16.9 44 131-175 71-114 (336)
98 TIGR03614 RutB pyrimidine util 40.5 60 0.0013 31.1 5.6 42 136-177 146-187 (226)
99 cd01014 nicotinamidase_related 37.5 72 0.0016 28.5 5.3 43 135-177 93-135 (155)
100 PRK08813 threonine dehydratase 37.5 4.8E+02 0.01 26.9 12.1 33 298-332 84-116 (349)
101 PTZ00331 alpha/beta hydrolase; 37.3 1.1E+02 0.0024 29.0 6.9 58 136-193 141-201 (212)
102 PRK13982 bifunctional SbtC-lik 35.9 60 0.0013 35.1 5.3 37 139-175 255-305 (475)
103 cd01015 CSHase N-carbamoylsarc 35.4 83 0.0018 28.8 5.5 42 136-177 109-150 (179)
104 PRK12743 oxidoreductase; Provi 35.1 2.9E+02 0.0063 26.2 9.6 31 142-174 4-34 (256)
105 PF13450 NAD_binding_8: NAD(P) 34.6 67 0.0014 24.6 4.0 24 152-175 5-28 (68)
106 PF12242 Eno-Rase_NADH_b: NAD( 34.5 87 0.0019 25.3 4.6 55 118-176 15-74 (78)
107 KOG1500 Protein arginine N-met 34.5 1.3E+02 0.0027 31.3 6.9 53 272-330 155-210 (517)
108 COG0078 ArgF Ornithine carbamo 34.2 1.7E+02 0.0038 29.7 7.8 65 106-177 121-188 (310)
109 PF00857 Isochorismatase: Isoc 33.5 75 0.0016 28.5 4.9 41 136-176 107-147 (174)
110 PRK11440 putative hydrolase; P 33.5 91 0.002 28.7 5.5 41 137-177 117-157 (188)
111 cd00431 cysteine_hydrolases Cy 32.9 1.6E+02 0.0034 26.0 6.9 42 136-177 105-146 (161)
112 PF00185 OTCace: Aspartate/orn 32.2 71 0.0015 28.9 4.4 34 143-176 4-37 (158)
113 cd01013 isochorismatase Isocho 31.0 1.4E+02 0.003 28.0 6.4 43 136-178 137-179 (203)
114 PF12831 FAD_oxidored: FAD dep 30.5 62 0.0013 34.1 4.3 31 144-176 2-32 (428)
115 PF00890 FAD_binding_2: FAD bi 30.4 60 0.0013 33.7 4.1 30 144-175 2-31 (417)
116 PRK06847 hypothetical protein; 29.7 68 0.0015 32.6 4.4 30 143-174 6-35 (375)
117 PRK06202 hypothetical protein; 28.7 68 0.0015 30.5 3.9 36 295-330 63-98 (232)
118 PF05185 PRMT5: PRMT5 arginine 28.4 99 0.0021 33.1 5.4 56 275-330 165-224 (448)
119 KOG2616 Pyridoxalphosphate-dep 27.6 1E+02 0.0023 29.9 4.7 37 380-417 151-187 (266)
120 PF01134 GIDA: Glucose inhibit 27.5 83 0.0018 33.2 4.5 29 144-174 2-30 (392)
121 PF02737 3HCDH_N: 3-hydroxyacy 27.4 99 0.0021 28.6 4.6 27 147-175 5-31 (180)
122 TIGR00521 coaBC_dfp phosphopan 26.3 93 0.002 32.7 4.6 26 150-175 209-234 (390)
123 PRK09126 hypothetical protein; 26.1 78 0.0017 32.4 4.0 30 144-175 6-35 (392)
124 PF01494 FAD_binding_3: FAD bi 26.0 94 0.002 30.6 4.5 32 144-177 4-35 (356)
125 PLN02743 nicotinamidase 25.5 1.1E+02 0.0024 29.8 4.8 40 136-176 146-194 (239)
126 TIGR00670 asp_carb_tr aspartat 25.1 5.5E+02 0.012 25.9 9.8 54 142-197 151-207 (301)
127 PF13649 Methyltransf_25: Meth 25.0 64 0.0014 26.2 2.6 31 299-330 4-34 (101)
128 PRK06753 hypothetical protein; 24.3 97 0.0021 31.4 4.3 30 144-175 3-32 (373)
129 PRK08198 threonine dehydratase 24.3 5.1E+02 0.011 27.0 9.8 36 294-332 70-105 (404)
130 COG0026 PurK Phosphoribosylami 24.3 1.2E+02 0.0026 31.6 4.9 32 144-177 4-35 (375)
131 PRK13656 trans-2-enoyl-CoA red 24.2 8.7E+02 0.019 25.7 12.9 37 261-304 106-142 (398)
132 PRK12266 glpD glycerol-3-phosp 24.1 89 0.0019 33.8 4.2 30 144-175 9-38 (508)
133 PRK08849 2-octaprenyl-3-methyl 24.1 1.1E+02 0.0023 31.6 4.6 29 144-174 6-34 (384)
134 PLN02621 nicotinamidase 23.8 2.5E+02 0.0053 26.2 6.6 43 136-178 122-164 (197)
135 PF13478 XdhC_C: XdhC Rossmann 23.6 96 0.0021 27.5 3.6 28 146-175 3-30 (136)
136 PF04198 Sugar-bind: Putative 23.5 4E+02 0.0087 26.0 8.3 90 258-353 20-110 (255)
137 PRK14804 ornithine carbamoyltr 23.4 2.7E+02 0.0058 28.3 7.2 34 143-177 155-188 (311)
138 cd06447 D-Ser-dehyd D-Serine d 22.9 6E+02 0.013 26.8 9.9 34 297-332 136-169 (404)
139 KOG0025 Zn2+-binding dehydroge 22.8 2.8E+02 0.006 28.4 6.8 53 142-197 162-215 (354)
140 PF04989 CmcI: Cephalosporin h 22.6 2E+02 0.0044 27.5 5.7 44 281-329 25-69 (206)
141 PRK07494 2-octaprenyl-6-methox 22.3 93 0.002 31.8 3.8 31 143-175 9-39 (388)
142 PRK05579 bifunctional phosphop 22.2 1.2E+02 0.0026 32.0 4.6 26 150-175 212-237 (399)
143 PF06415 iPGM_N: BPG-independe 22.1 2.5E+02 0.0055 27.2 6.3 50 128-177 15-73 (223)
144 PRK05868 hypothetical protein; 22.1 1.2E+02 0.0025 31.3 4.4 29 144-174 4-32 (372)
145 PRK09620 hypothetical protein; 22.0 1.4E+02 0.003 28.9 4.7 26 150-175 27-52 (229)
146 TIGR01292 TRX_reduct thioredox 21.9 1.1E+02 0.0025 29.5 4.2 29 144-174 3-31 (300)
147 PRK05988 formate dehydrogenase 21.9 1.8E+02 0.0039 26.4 5.1 59 387-449 42-103 (156)
148 PF13738 Pyr_redox_3: Pyridine 21.7 1E+02 0.0023 28.0 3.6 25 144-172 2-27 (203)
149 COG0683 LivK ABC-type branched 21.6 5.2E+02 0.011 26.3 9.1 49 276-331 192-240 (366)
150 PLN02464 glycerol-3-phosphate 21.3 1.1E+02 0.0023 34.3 4.2 30 144-175 74-103 (627)
151 cd06283 PBP1_RegR_EndR_KdgR_li 21.3 2.4E+02 0.0052 26.4 6.2 35 292-328 177-215 (267)
152 TIGR01377 soxA_mon sarcosine o 21.0 1.2E+02 0.0026 30.8 4.2 29 144-174 3-31 (380)
153 PRK06475 salicylate hydroxylas 20.8 1.2E+02 0.0026 31.4 4.2 31 143-175 4-34 (400)
154 TIGR01988 Ubi-OHases Ubiquinon 20.8 1.1E+02 0.0024 30.9 3.9 30 145-176 3-32 (385)
155 PRK07538 hypothetical protein; 20.6 1.2E+02 0.0026 31.5 4.2 29 144-174 3-31 (413)
156 PRK11041 DNA-binding transcrip 20.5 2.4E+02 0.0052 27.4 6.1 35 292-328 212-250 (309)
157 PRK11101 glpA sn-glycerol-3-ph 20.5 1.2E+02 0.0025 33.3 4.2 30 144-175 9-38 (546)
158 PRK06617 2-octaprenyl-6-methox 20.5 1.1E+02 0.0025 31.2 3.9 29 144-174 4-32 (374)
159 cd06356 PBP1_Amide_Urea_BP_lik 20.4 8.4E+02 0.018 24.1 14.3 32 293-325 187-219 (334)
160 PRK08274 tricarballylate dehyd 20.4 1.2E+02 0.0026 32.1 4.2 29 144-174 7-35 (466)
161 cd06280 PBP1_LacI_like_4 Ligan 20.4 2.6E+02 0.0056 26.4 6.2 35 292-328 171-209 (263)
162 PRK15317 alkyl hydroperoxide r 20.3 1.1E+02 0.0025 33.0 4.1 30 143-174 213-242 (517)
163 TIGR00137 gid_trmFO tRNA:m(5)U 20.1 1.3E+02 0.0027 32.2 4.2 30 143-174 2-31 (433)
164 PRK05192 tRNA uridine 5-carbox 20.0 1.4E+02 0.003 33.5 4.6 30 144-175 7-36 (618)
165 PRK08850 2-octaprenyl-6-methox 20.0 1.2E+02 0.0026 31.3 4.1 30 143-174 6-35 (405)
No 1
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=5.1e-54 Score=436.47 Aligned_cols=312 Identities=26% Similarity=0.353 Sum_probs=249.2
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..++|||+++ ++|+ +.+ |.+||+|+||+||+++||||+|++.+++.+++++|.++|||+|+++||||+
T Consensus 12 ~~~~TPl~~~--~~l~-~~~---------g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g~ 79 (331)
T PRK03910 12 AGLPTPLEPL--PRLS-AAL---------GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLITAGAIQSNHAR 79 (331)
T ss_pred cCCCCCceEh--hhhh-Hhh---------CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCcchhHHHH
Confidence 4599999999 8887 433 679999999999665589999999999999999999999998889999999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccch-----hhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILT-----GYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~-----~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 230 (460)
|+|++|+.+|++|+||||+..+..+. .|..+++.||+ |+.+++.+ ...+...+.++
T Consensus 80 alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~--~~~~~~~~~a~---------------- 141 (331)
T PRK03910 80 QTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGT--DMDAQLEELAE---------------- 141 (331)
T ss_pred HHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccc--hHHHHHHHHHH----------------
Confidence 99999999999999999998765332 45567899998 99998642 11122111111
Q ss_pred HHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
++.+..+..|++|+|+.||.+.+|+.+++.||++|+...+..||+||+|+|||||++|+
T Consensus 142 ---------------------~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi 200 (331)
T PRK03910 142 ---------------------ELRAQGRRPYVIPVGGSNALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGL 200 (331)
T ss_pred ---------------------HHHHcCCceEEECCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHH
Confidence 12223345688999999999999999999999999842123699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
+++|++.+++++|||||++++.....+.......++++.++. |.. +.+..+.+++++.++.|.|+|+|++++++
T Consensus 201 ~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~---~~~---~~~~~~~~~~~~~~~~~~v~d~e~~~~~~ 274 (331)
T PRK03910 201 AAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGL---PTE---IPRADIRLWDDYVGPGYGVPTDEMLEAVK 274 (331)
T ss_pred HHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCC---Ccc---CCcccEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 999999999999999999987664433222233344444432 210 11234457788899999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhHHHHHH
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQRYK 445 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~~~g~~Vv~i~TGG~~~~~~~~~ry~ 445 (460)
+|++++||++||+|+|+++++++++.+.. +.++++||+||||||.|++++.+||.
T Consensus 275 ~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~~~ 330 (331)
T PRK03910 275 LLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTGGAPALFAYADAFA 330 (331)
T ss_pred HHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECCChHhhhhhhhhhc
Confidence 99999999999998999999999987543 44678999999999999999999984
No 2
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=4.8e-53 Score=425.66 Aligned_cols=307 Identities=22% Similarity=0.305 Sum_probs=239.9
Q ss_pred cccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHH
Q 012606 76 EKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA 155 (460)
Q Consensus 76 ~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg 155 (460)
++..+|||+++ ++++ +.. +.+||+||||+||+.+||||+|++.+++.+++++|.++||++|+|+||||
T Consensus 3 ~~~~~TPl~~~--~~l~-~~~---------g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g 70 (311)
T TIGR01275 3 LIPWPTPIQYL--PRIS-REI---------GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVITVGAIQSNHA 70 (311)
T ss_pred CCCCCCcceec--hhhh-hhc---------CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHH
Confidence 46689999999 8887 332 67999999999954348999999999999999999999999988999999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 156 TAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 156 ~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
+|+|++|+++|++|+||||+..+. ..+..+++.||+ |+.+++.+|++..+.....
T Consensus 71 ~alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~---------------------- 126 (311)
T TIGR01275 71 RATALAAKKLGLDAVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEEL---------------------- 126 (311)
T ss_pred HHHHHHHHHhCCceEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHH----------------------
Confidence 999999999999999999986432 234556799998 9999865455433222111
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
+.++.+..+.+|++|+++.||.+.+|++++++||++|+. ++..||+||+|+|||||++|++++|
T Consensus 127 ---------------~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q~~-~~~~~D~vv~~vGtGgt~~Gi~~~l 190 (311)
T TIGR01275 127 ---------------AEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQLE-SEVKFDSIVVAAGSGGTIAGLSLGL 190 (311)
T ss_pred ---------------HHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 111122334578999999999999999999999999974 2246999999999999999999999
Q ss_pred HhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 315 ICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 315 ~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
++++++++||||+++..............+.+.+.++... ...+.+++++.+..|.|+|+|++++|++|++
T Consensus 191 k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~ 261 (311)
T TIGR01275 191 SILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKA---------SEVIPELDDYSGPGYGKPTSEVAEIVKKVAS 261 (311)
T ss_pred HHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCC---------CCCEEEECCcccCcCCCCCHHHHHHHHHHHH
Confidence 9999999999999876532222222222333444333210 1234456777888999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQR 443 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~r 443 (460)
++||++||+|+|+++++++++++....++++||+||||||+++++..+|
T Consensus 262 ~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~~g~~~~~~~ 310 (311)
T TIGR01275 262 REGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGISGLFAYGDK 310 (311)
T ss_pred HhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCcccccccccc
Confidence 9999999998999999999887543224679999999999999987654
No 3
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.6e-52 Score=426.48 Aligned_cols=310 Identities=24% Similarity=0.288 Sum_probs=242.5
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCC-CchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~-~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
-|+|||+++ ++++ +.+|. +.+||+||||+||++ +||||+|++.+++.+|+++|+++|+++|++|||||+
T Consensus 12 ~g~TPl~~~--~~l~-~~~g~-------~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~ 81 (337)
T TIGR01274 12 FGPSPIHPL--PRLS-QHLGG-------KVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTR 81 (337)
T ss_pred CCCCCceEh--HhhH-HhcCC-------CceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHH
Confidence 399999999 8888 54421 359999999999653 599999999999999999999999999889999999
Q ss_pred HHHHHHHHhCCeEEEEecCCCC-cc----chhhhHHHHhCCc-EEEeCCCchh--hHHHHHHHHhhhhhcCCCCccchhh
Q 012606 157 AVAVSCAERGLKSHLLLRGEQP-QI----LTGYNLISTIYGK-VTYVPRTHYA--HRIEMLKSYANLVAGNNGDVVWCNE 228 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~-~~----~~~~~~~~~~~Ga-V~~v~~~~~~--~~~~~~~~~A~~la~~~g~~~w~~~ 228 (460)
|+|++|+++|++|+||||+..+ .. +..|..++++||+ |+.++.. ++ .+....++ .
T Consensus 82 alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~~~~~~~~~a-~--------------- 144 (337)
T TIGR01274 82 QVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG-FDIGHRNSWERA-L--------------- 144 (337)
T ss_pred HHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc-ccccchHHHHHH-H---------------
Confidence 9999999999999999998542 11 1356778999998 9988753 32 11111100 0
Q ss_pred hhHHHHHhhhhhhcccccccccccccccCCcEEEecCCC-cchHHHHHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchh
Q 012606 229 IFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGA-GDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTT 306 (460)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~-~np~~~~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt 306 (460)
.++.+..+..|++|.++ .||.+++|+.+++.||++|+. .+ ..||+||+|+|||||
T Consensus 145 ----------------------~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~~~Ei~eq~~~~~-~~~D~vvv~vGtGgt 201 (337)
T TIGR01274 145 ----------------------EEVRGAGGKPYPIPAGCSDHPLGGLGFVGFAFEVREQEGELG-FKFDYVVVCSVTGST 201 (337)
T ss_pred ----------------------HHHHhcCCceEEeCCCCCCCccchhHHHHHHHHHHHHHHhcC-CCCCEEEEeCCchHh
Confidence 00112223457888884 479999999999999999974 23 369999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHH
Q 012606 307 AVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 386 (460)
Q Consensus 307 ~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~ 386 (460)
++|++++|++.+++++|||||++++..............+++.++... .. ....+.+..++.++.|.++|+|++
T Consensus 202 ~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~---~~~~~~~~~~~~~~~~~v~d~e~~ 275 (337)
T TIGR01274 202 QAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLER---DI---TEDDVVLDTRFAYPEYGVPNEGTL 275 (337)
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCC---Cc---CccceEEeccccCCCcCCCCHHHH
Confidence 999999999999999999999999876543333333344445444221 11 011234667788899999999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCCcchhhHHHH
Q 012606 387 EACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQR 443 (460)
Q Consensus 387 ~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~~~~~~~~~r 443 (460)
++++++++++||++||+|||++++|+++++++ .+.++++||+|||||.++++++.+.
T Consensus 276 ~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~htGG~~~~~~~~~~ 333 (337)
T TIGR01274 276 EAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAHLGGAPALNAYSFL 333 (337)
T ss_pred HHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEeCCChhhhhhhHHH
Confidence 99999999999999999999999999999875 3677899999999999999996543
No 4
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.2e-52 Score=425.48 Aligned_cols=310 Identities=25% Similarity=0.287 Sum_probs=242.0
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCC--ceEEEEeCCCCCCC-CchhHHHhHHhhHHHHHhcCCCeEEEeCCccchH
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDED--RCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH 154 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g--~~l~lKrEdln~p~-~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNh 154 (460)
.|+|||+++ ++++ +.+ | .+||+||||+|+++ +||||+|++.+++.+|+++|.++|+++|+++|||
T Consensus 13 ~g~TPL~~~--~~l~-~~~---------g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~GN~ 80 (337)
T PRK12390 13 FGPTPIHPL--KRLS-AHL---------GGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNH 80 (337)
T ss_pred CCCCcceeH--HHHH-HHh---------CCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEEeCCCccHH
Confidence 499999999 8876 433 4 68999999999642 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCcc-----chhhhHHHHhCCc-EEEeCCCchhh-HHHHHHHHhhhhhcCCCCccchh
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQI-----LTGYNLISTIYGK-VTYVPRTHYAH-RIEMLKSYANLVAGNNGDVVWCN 227 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~-----~~~~~~~~~~~Ga-V~~v~~~~~~~-~~~~~~~~A~~la~~~g~~~w~~ 227 (460)
|+|+|++|+++|++|+|||++..|.. +..|..++++||+ |+.++.. ++. ..+..+. +.+
T Consensus 81 g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~~~~~~~~~-~~~------------ 146 (337)
T PRK12390 81 TRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG-FDIGIRKSWED-ALE------------ 146 (337)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC-cchhHHHHHHH-HHH------------
Confidence 99999999999999999988765531 3346668899998 9999863 321 0011100 000
Q ss_pred hhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCC-cchHHHHHHHHHHHHHHHhHH-cCCCCCCEEEEecCCch
Q 012606 228 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGA-GDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGT 305 (460)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~-~np~~~~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGg 305 (460)
.+.+...+.|.+|.+. .+|.+.+||.++++||++|+. .+ ..||+||+|+||||
T Consensus 147 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~-~~~d~vvv~vGtGg 201 (337)
T PRK12390 147 ------------------------DVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELG-FKFDYIVVCSVTGS 201 (337)
T ss_pred ------------------------HHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcC-CCCCEEEEecCcch
Confidence 0111133567788874 468999999999999999964 33 26999999999999
Q ss_pred hHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHH
Q 012606 306 TAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGE 385 (460)
Q Consensus 306 t~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~ 385 (460)
|++|++++|++.++++|||||+++++...+..........+++.++.+. .. .+..+.+.+++.++.|.|+|+|+
T Consensus 202 tlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~---~~---~~~~~~~~~~~~~~~~~vsd~e~ 275 (337)
T PRK12390 202 TQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGR---DI---TEDDVVLDERYAGPEYGLPNEGT 275 (337)
T ss_pred hHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCC---CC---ChhhEEEecccccCCCCCCCHHH
Confidence 9999999999999999999999998766544332223333344443321 11 11234467788999999999999
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCCcchhhHHHHH
Q 012606 386 IEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQRY 444 (460)
Q Consensus 386 ~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~~~~~~~~~ry 444 (460)
+++|+++++++||++||+|||++++++++++++ .++++++||+|||||.++++++.++.
T Consensus 276 ~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~htgg~~~~~~~~~~~ 335 (337)
T PRK12390 276 LEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHLGGVPALNAYSFLF 335 (337)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCChHhhhcchhhh
Confidence 999999999999999999999999999999875 36778999999999999999876553
No 5
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=404.57 Aligned_cols=317 Identities=29% Similarity=0.361 Sum_probs=265.6
Q ss_pred cchhhhhccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCe
Q 012606 64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (460)
Q Consensus 64 ~~~~~~~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~ 143 (460)
++|+|+.+ +.++||+.++ ++++ ..+ |.+||+||||+.|+.+||||+||+++++.+|.+.|.++
T Consensus 4 ~rf~R~~l-----~~~pTPiq~L--~rls-~~l---------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dT 66 (323)
T COG2515 4 SRFPRMEL-----IFGPTPIQKL--PRLS-AHL---------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADT 66 (323)
T ss_pred ccCCcccc-----CCCCChhhhH--HHHH-Hhc---------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcE
Confidence 45666655 4489999999 9998 544 68999999999988789999999999999999999999
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g 221 (460)
+||+||.||||..++|++|+++|++|+.++.... .-...+|.++.+.+|+ ++.++.+.+...+...+..+
T Consensus 67 lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~-------- 138 (323)
T COG2515 67 LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELA-------- 138 (323)
T ss_pred EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHH--------
Confidence 9999999999999999999999999999998754 1112367788899998 99998865331122211111
Q ss_pred CccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEec
Q 012606 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA 301 (460)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~v 301 (460)
.++...+.+||+||+|++||.+..||..++.||.+|.+.- -.+|.|||++
T Consensus 139 -----------------------------e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~-~~fD~vVva~ 188 (323)
T COG2515 139 -----------------------------EEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQL-LKFDSVVVAP 188 (323)
T ss_pred -----------------------------HHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhc-cCCCEEEEeC
Confidence 1223457789999999999999999999999999998521 4799999999
Q ss_pred CCchhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeC
Q 012606 302 GTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNV 381 (460)
Q Consensus 302 GtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~ 381 (460)
|||||.+|+..++...+++++||||.+..+....+.++..+....++.++... +..+.++++++...|+++
T Consensus 189 gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~---------~~~v~~~~dy~~~~Yg~p 259 (323)
T COG2515 189 GSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGS---------EADVLLSDDYHHPGYGKP 259 (323)
T ss_pred CCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCC---------CceEEEEecccCCccCCc
Confidence 99999999999999899999999999999888777777777777666665431 234456788999999999
Q ss_pred cHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCCcchhhHHHHH
Q 012606 382 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQRY 444 (460)
Q Consensus 382 d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~~~~~~~~~ry 444 (460)
.+|.+++++.+++.|||++||+|+++++.++++.+++ .++.+.+|++|||||.++++.+.+||
T Consensus 260 ~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~gl~~y~~~~ 323 (323)
T COG2515 260 NEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAPGLFAYSPRL 323 (323)
T ss_pred CHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCccchhcccccC
Confidence 9999999999999999999999999999999999865 46778889999999999999988765
No 6
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.9e-50 Score=409.98 Aligned_cols=307 Identities=24% Similarity=0.329 Sum_probs=234.6
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..++|||+++ ++++ +.. |++||+||||+||++.||||+|++.+++.+|+++|.++||++|+|+||||+
T Consensus 18 ~~~~TPl~~~--~~l~-~~~---------g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~ 85 (329)
T PRK14045 18 IPWETPIQYL--PNIS-REL---------GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAF 85 (329)
T ss_pred CCCCCCcccc--hhhH-HHh---------CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHH
Confidence 3489999999 8887 332 679999999999754589999999999999999999999998899999999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
|+|++|+++|++|++|||...+. ..|..++++||+ |+.++.. .+.....+. +.
T Consensus 86 alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~-~~---------------------- 140 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLRGKEEL--KGNYLLDKIMGIETRVYEAKDSFELMKYAE-EV---------------------- 140 (329)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCC--CcCHHHHHHCCCEEEEECCCcccchHHHHH-HH----------------------
Confidence 99999999999999999976542 245556799998 8777632 222111111 11
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
+.++.+..+.+|++|+|+.||.+..|+.+...||++|+...+..+|+||+|+|||||++|+++++
T Consensus 141 ---------------~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~l 205 (329)
T PRK14045 141 ---------------AEELKGEGRKPYIIPPGGASPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGL 205 (329)
T ss_pred ---------------HHHHHhcCCCEEEECCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 11122334467889999999999999988888999998422136999999999999999999999
Q ss_pred HhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 315 ICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 315 ~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
+..+++++||||++.+....+...+..+.....+..+.+ .... ...+.+.+.+ .|+..++|.+++|+++++
T Consensus 206 k~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~-----~~~~~d~~~~-~y~~~~~e~~~~~~~la~ 276 (329)
T PRK14045 206 AILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVK---VKVQ-----EPELYDYSFG-EYGKITKEVAKLIRSVGT 276 (329)
T ss_pred HHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCC---CCcc-----ceEecccccC-CCCCCCHHHHHHHHHHHH
Confidence 999999999999997754434443333333322222211 0100 1112344444 477777899999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYK 445 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~ 445 (460)
+|||++||+|||++++++++++++. ..+++||+|||||.++++++.++++
T Consensus 277 ~eGi~ldpvytgk~~~a~~~~~~~~-~~~~~iv~ihtGG~~g~~~~~~~~~ 326 (329)
T PRK14045 277 MEGLILDPVYTGKAFYGLMDLAKKG-ELGEKILFIHTGGISGTFHYGDKML 326 (329)
T ss_pred hhCCCCccchHHHHHHHHHHHHHcC-CCCCCEEEEECCCcccccchHHHhh
Confidence 9999999999999999999998753 2268999999999999999888874
No 7
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3.2e-50 Score=404.55 Aligned_cols=298 Identities=27% Similarity=0.295 Sum_probs=230.6
Q ss_pred CCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCC-CchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHH
Q 012606 81 GPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVA 159 (460)
Q Consensus 81 TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~-~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA 159 (460)
|||+++ ++|+ +.+|. +.+||+||||+||++ +||||+|++.+++.+++++|.++||++|+|+||||+|+|
T Consensus 1 TPl~~~--~~l~-~~~g~-------~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA 70 (307)
T cd06449 1 TPIQYL--PRLS-EHLGG-------KVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVA 70 (307)
T ss_pred Ccccch--hHHH-HhhCC-------CCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHH
Confidence 899999 8887 54432 468999999999653 389999999999999999999999999889999999999
Q ss_pred HHHHHhCCeEEEEecCCCCc-----cchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHH
Q 012606 160 VSCAERGLKSHLLLRGEQPQ-----ILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (460)
Q Consensus 160 ~aaa~~Gl~~~iv~p~~~~~-----~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~ 233 (460)
++|+.+|++|+||||+..++ .+..|..+++.||+ |+.++...+.......+..++
T Consensus 71 ~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~------------------- 131 (307)
T cd06449 71 AVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAE------------------- 131 (307)
T ss_pred HHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHH-------------------
Confidence 99999999999999987763 11246667899998 999986432211111111000
Q ss_pred HHhhhhhhcccccccccccccccCCcEEEecCCCc-chHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHH
Q 012606 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG-DAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (460)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~-np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~ 312 (460)
++.+..+.+|++|+++. ||.+.+|+.++++||++|+...+..||+||+|+|||||++|+++
T Consensus 132 ------------------~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~ 193 (307)
T cd06449 132 ------------------EVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSV 193 (307)
T ss_pred ------------------HHHHcCCceEEecCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHH
Confidence 11122335688898876 99999999999999999985222369999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 313 ~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
+|++.++.++||||+++++.....+....+.......++. +.. ...+.+.+++.++.|.|+|+|++++|+++
T Consensus 194 ~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~-----~~~~~~~~~~~~~~~~v~d~e~~~a~~~l 265 (307)
T cd06449 194 GLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGL---EVK-----EEDVVLDDDYAAPEYGIPNDETIEAIKLC 265 (307)
T ss_pred HHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCC---CCC-----cccEEEecCcccCCCCCCCHHHHHHHHHH
Confidence 9999999999999999987654433222221111111121 111 12345677888899999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCC
Q 012606 393 AQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGG 433 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~~~~~~~-~~~g~~Vv~i~TGG 433 (460)
++++||++||+|||++++++.+++++. ++++++||+|||||
T Consensus 266 a~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 266 ARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred HHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 999999999999999999999988653 56688999999998
No 8
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=4e-50 Score=414.12 Aligned_cols=351 Identities=15% Similarity=0.104 Sum_probs=259.5
Q ss_pred CCceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEE
Q 012606 35 PQGICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYV 111 (460)
Q Consensus 35 ~~~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~l 111 (460)
.-|..=-.|+||+||++|.| .+|.....|+.|+++ ..++++|+|++|||+++ ++|+ +.+| +++||+
T Consensus 10 ~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~--~~Ls-~~~g--------g~~Iyl 78 (397)
T PRK04346 10 YFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFA--ERLS-EHLG--------GAKIYL 78 (397)
T ss_pred cccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEh--HHHH-HHcC--------CCeEEE
Confidence 44666778999999999998 899999999999988 88889999999999999 9998 5553 689999
Q ss_pred EeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhC
Q 012606 112 VRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIY 191 (460)
Q Consensus 112 KrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~ 191 (460)
||||+| | +||||+|.+...+..|+++|+++||+. .++||||+|+|++|+++|++|+||||+.+.+++..|+.+|++|
T Consensus 79 K~Edln-p-tGS~K~r~al~~~l~A~~~Gk~~vIae-tgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~l 155 (397)
T PRK04346 79 KREDLN-H-TGAHKINNVLGQALLAKRMGKKRIIAE-TGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLL 155 (397)
T ss_pred EECCCC-C-ccchHHHHHHHHHHHHHHcCCCeEEEe-cCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHC
Confidence 999999 5 899999999888888999999988872 2569999999999999999999999986544444688889999
Q ss_pred Cc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-Ccc
Q 012606 192 GK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGD 269 (460)
Q Consensus 192 Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~n 269 (460)
|| |+.|+.+..+..+...++ .+.|+.+. ....|+++.. +++
T Consensus 156 GA~Vv~v~~g~~~l~da~~ea----------~~~~~~~~---------------------------~~~~y~~gs~~gph 198 (397)
T PRK04346 156 GAEVVPVTSGSRTLKDAVNEA----------LRDWVTNV---------------------------EDTHYLIGSVAGPH 198 (397)
T ss_pred CCEEEEECCCCCCHHHHHHHH----------HHHHHHhC---------------------------CCCeEEeCCcCCCC
Confidence 99 999986432222232221 11343211 1234554432 223
Q ss_pred h--HHH-HHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChh-------hHHHH
Q 012606 270 A--VAL-LGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID-------GYKQQ 338 (460)
Q Consensus 270 p--~~~-~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~-------~~~~~ 338 (460)
| ..+ .|+.+++.||++|+. ..+..||+||+||||||+++|++.+|++ ++.++|||||+.++.. .+...
T Consensus 199 p~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g 277 (397)
T PRK04346 199 PYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKG 277 (397)
T ss_pred CchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcC
Confidence 3 333 488899999999984 1224799999999999999999999975 7899999999988521 01100
Q ss_pred HHhHHHH------------HH--HHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccc
Q 012606 339 EKNLISE------------FK--RLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVY 404 (460)
Q Consensus 339 ~~~l~~~------------~~--~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~y 404 (460)
.....++ +. .+|.. +..++.+++..+.+.+...++.+.|+|+|+++|+++|+++|||+.++.
T Consensus 278 ~~g~~~g~~~~~~~~~~g~~~~~~sis~---gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~e- 353 (397)
T PRK04346 278 RPGVLHGAKTYLLQDEDGQILETHSISA---GLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALE- 353 (397)
T ss_pred CeeeeccccceecccCCCccCCCceeec---cccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccH-
Confidence 0000000 00 01111 112223334444445555556789999999999999999999998875
Q ss_pred hHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhHHH
Q 012606 405 TLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQ 442 (460)
Q Consensus 405 sgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~~~ 442 (460)
|+.++|+++++++. +.++++||+++|| |+.++....+
T Consensus 354 sa~AlA~a~kla~~-l~~~~~Vvv~lsGrG~kd~~~~~~ 391 (397)
T PRK04346 354 SSHALAYALKLAPT-LGKDQIIVVNLSGRGDKDVFTVAK 391 (397)
T ss_pred HHHHHHHHHHhhhh-cCCCCeEEEEeCCCCccCHHHHHH
Confidence 67889998887653 5568899999999 9999877544
No 9
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-49 Score=410.28 Aligned_cols=351 Identities=15% Similarity=0.084 Sum_probs=261.2
Q ss_pred cCCCCceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCce
Q 012606 32 SNSPQGICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC 108 (460)
Q Consensus 32 ~~~~~~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~ 108 (460)
.|..-|..=-+|+||+||++|+| ..|.....|++|+++ ..++.+|++++|||+++ ++|+ +.+| +++
T Consensus 11 ~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~--~~Ls-~~~G--------g~~ 79 (402)
T PRK13028 11 ADGFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHA--KRLS-EELG--------GAQ 79 (402)
T ss_pred CCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeeh--HHhH-hhcC--------CCe
Confidence 34455777789999999999998 899999999999998 88888999999999999 9998 5543 679
Q ss_pred EEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHH
Q 012606 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIS 188 (460)
Q Consensus 109 l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~ 188 (460)
||+||||+| | +||||+|.+...+..|+++|+++||+. +++||||+|+|++|+++|++|+||||+.+++.+..|+.+|
T Consensus 80 IylK~Edln-p-tGS~K~r~al~~~l~A~~~G~~~vI~e-tgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~m 156 (402)
T PRK13028 80 IYLKREDLN-H-TGAHKINNCLGQALLAKRMGKKRLIAE-TGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRM 156 (402)
T ss_pred EEEEECCCC-C-CcchHHHHHHHHHHHHHHcCCCeEEEe-cCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHH
Confidence 999999999 5 899999999888888999999888852 2569999999999999999999999987665555678889
Q ss_pred HhCCc-EEEeCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecC
Q 012606 189 TIYGK-VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE 265 (460)
Q Consensus 189 ~~~Ga-V~~v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~ 265 (460)
++||| |+.|+.+ .+++ ...++ ...|.. +....+|+++.
T Consensus 157 r~~GAeVi~v~~g~~~~~~--a~~~a----------~~~~~~---------------------------~~~~~~y~~~s 197 (402)
T PRK13028 157 KLLGAEVVPVTRGGRTLKE--AVDSA----------FEDYLK---------------------------DPDNTHYAIGS 197 (402)
T ss_pred HHcCCEEEEEcCCCCCHHH--HHHHH----------HHHHHH---------------------------hcCCcEEEecC
Confidence 99998 9999853 2332 22111 011221 11223455544
Q ss_pred C-C--cchHHH-HHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccC--------Ch
Q 012606 266 G-A--GDAVAL-LGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD--------TI 332 (460)
Q Consensus 266 g-~--~np~~~-~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g--------~~ 332 (460)
. + +.|..+ +|+.+++.||.+|+. ..+..||+||+||||||+++|++.+|++ +++++|||||+.+ +.
T Consensus 198 ~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa 276 (402)
T PRK13028 198 VVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAA 276 (402)
T ss_pred cCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccc
Confidence 2 2 234444 477788999999973 1224799999999999999999999985 5889999999988 22
Q ss_pred hhHHHHHHhHHHHH--------------HHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCC
Q 012606 333 DGYKQQEKNLISEF--------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGI 398 (460)
Q Consensus 333 ~~~~~~~~~l~~~~--------------~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI 398 (460)
. +........++. ..+++.++ ..+.+++..+.+.+...+..+.|+|+|+++|+++|+++|||
T Consensus 277 ~-l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl---~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGI 352 (402)
T PRK13028 277 T-LTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGL---DYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGI 352 (402)
T ss_pred c-ccCCCcceecccceeeccccCCCcCCccceeccc---cCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCC
Confidence 1 111000000000 01122111 12223344444555555678999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhHHH
Q 012606 399 LVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQ 442 (460)
Q Consensus 399 ~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~~~ 442 (460)
+++|+ |++++|++++++++ +.++++||+++|| |+.++....+
T Consensus 353 i~~~~-sa~alA~a~~~a~~-l~~~~~VVv~lsG~G~kd~~~~~~ 395 (402)
T PRK13028 353 IPALE-SSHAVAYAIKLAPE-LSKDETILVNLSGRGDKDIDYVAE 395 (402)
T ss_pred eeccH-HHHHHHHHHHhhhh-cCCCCeEEEEECCCCccCHHHHHH
Confidence 99996 78999999888754 5678999999999 9999877543
No 10
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=385.50 Aligned_cols=352 Identities=16% Similarity=0.134 Sum_probs=274.2
Q ss_pred CCCCceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceE
Q 012606 33 NSPQGICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCF 109 (460)
Q Consensus 33 ~~~~~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l 109 (460)
|-.-|..--.|+||+||++|.| .+|.....|++|+.. ..++++|+|+||||+.. +||+ +.+ |++|
T Consensus 6 ~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a--~~Lt-~~~---------gaki 73 (396)
T COG0133 6 KGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFA--ERLT-EHL---------GAKI 73 (396)
T ss_pred CCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHH--HHHH-Hhh---------CceE
Confidence 3345666678999999999998 899999999999988 88889999999999999 9998 554 6899
Q ss_pred EEEeCCCCCCCCchhHHHhHHhhHHH---HHhcCCCeEEE-eCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhh
Q 012606 110 YVVRDDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYN 185 (460)
Q Consensus 110 ~lKrEdln~p~~GsnK~Rkl~~~l~~---a~~~g~~~VVt-~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~ 185 (460)
|+||||||| +|+ +|+++.|+| |+++|+++||+ +|+.| ||+|+|++||++|++|+|||..++.+++..|+
T Consensus 74 yLKREDL~H--tGA---HKiNN~lGQ~LLAkrMGK~riIAETGAGQ--HGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NV 146 (396)
T COG0133 74 YLKREDLNH--TGA---HKINNALGQALLAKRMGKTRIIAETGAGQ--HGVATATAAALFGLECVIYMGAEDVERQALNV 146 (396)
T ss_pred EEehhhhcc--cch---hhHHHHHHHHHHHHHhCCceEEeecCCCc--ccHHHHHHHHHhCCceEEEecchhhhhcccch
Confidence 999999999 565 778888888 59999999997 88866 99999999999999999999999988898999
Q ss_pred HHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEec
Q 012606 186 LISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVN 264 (460)
Q Consensus 186 ~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip 264 (460)
++|+++|| |+.|..++.+.+++++++ +++|+.++..++|. .. +..+|+||
T Consensus 147 fRM~LlGA~V~pV~sGs~TLKDA~neA----------lRdWvtn~~~ThY~--------------iG--sa~GPHPy--- 197 (396)
T COG0133 147 FRMRLLGAEVVPVTSGSGTLKDAINEA----------LRDWVTNVEDTHYL--------------IG--SAAGPHPY--- 197 (396)
T ss_pred hhhhhcCceEEEeccCCchHHHHHHHH----------HHHHHhccccceEE--------------Ee--eccCCCCc---
Confidence 99999999 999999888889988876 67999888777765 22 24467776
Q ss_pred CCCcchHHHHHHHHH-HHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCCh-hh------H
Q 012606 265 EGAGDAVALLGVFRL-LQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI-DG------Y 335 (460)
Q Consensus 265 ~g~~np~~~~G~~t~-~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~-~~------~ 335 (460)
|..++.|+++ +.|..+|+. ..++.||.||+|||+|++++|++..|.. ++++++||||+.|.- .. +
T Consensus 198 -----P~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl 271 (396)
T COG0133 198 -----PTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATL 271 (396)
T ss_pred -----hHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceee
Confidence 7899999998 599999974 3446899999999999999999999973 478999999998732 10 0
Q ss_pred HHHHHhHHHHH------------HH--HhccccccCCcccccchhhHHhhhcC-CCeEEeCcHHHHHHHHHHHHHhCCcc
Q 012606 336 KQQEKNLISEF------------KR--LFGFLLKKSSLNEVDGEIVHWVERCR-PRKFGNVFEGEIEACHRIAQLTGILV 400 (460)
Q Consensus 336 ~~~~~~l~~~~------------~~--~i~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~v~d~e~~~a~r~La~~eGI~v 400 (460)
.....++.++. .+ +|.. +..++.++++. .+..+.. ..-+.++|+|+++|.+.|++.|||.-
T Consensus 272 ~~G~~GvlhG~~tyllQd~~GQi~e~hSISA---GLDYPgVGPeh-a~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIP 347 (396)
T COG0133 272 TAGRPGVLHGMKTYLLQDEDGQILESHSISA---GLDYPGVGPEH-AYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIP 347 (396)
T ss_pred cCCCceeeecccceeeEcCCCCEeeeeeecc---CCCCCCCChhH-HHHHhcCceeEEecChHHHHHHHHHHHHhcCcch
Confidence 00000111110 00 1111 22333444433 3344333 33456899999999999999999996
Q ss_pred cccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhHHHHH
Q 012606 401 DPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQRY 444 (460)
Q Consensus 401 EP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~~~ry 444 (460)
--- |+-|+|-+.+++.. .++++.||+-+|| |-.|++...++.
T Consensus 348 ALE-SsHAlA~a~kla~~-~~~~~~ivvnlSGRGDKDv~tv~~~l 390 (396)
T COG0133 348 ALE-SSHALAYALKLAPK-LPKDEIIVVNLSGRGDKDVFTVAKLL 390 (396)
T ss_pred hhh-hHHHHHHHHHhchh-cCCCcEEEEEccCCCcccHHHHHHHh
Confidence 543 56889988888754 3455667777999 889988765543
No 11
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=2.9e-48 Score=401.18 Aligned_cols=356 Identities=15% Similarity=0.097 Sum_probs=256.7
Q ss_pred CCceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEE
Q 012606 35 PQGICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYV 111 (460)
Q Consensus 35 ~~~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~l 111 (460)
.-|..=-+|+||+||++|+| .+|.....|++|+++ ...+.+|+|++|||+++ ++|+ +.+|. ....|++||+
T Consensus 18 ~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~--~~Ls-~~~g~---~~~~g~~Iyl 91 (410)
T PLN02618 18 RFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFA--ERLT-EHYKR---ADGEGPEIYL 91 (410)
T ss_pred cccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEh--hhHH-HHhcc---ccCCCCEEEE
Confidence 44777789999999999998 899999999999988 77888899999999999 9998 65530 0001589999
Q ss_pred EeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhC
Q 012606 112 VRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIY 191 (460)
Q Consensus 112 KrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~ 191 (460)
||||+| | +||||+|.+...+..|+++|+++||+. +++||||+|+|++|+++|++|+||||+.+++.+..|+.+|++|
T Consensus 92 K~E~ln-p-tGS~K~R~a~~~~l~A~~~g~~~vIae-sgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~l 168 (410)
T PLN02618 92 KREDLN-H-TGAHKINNAVAQALLAKRLGKKRIIAE-TGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLL 168 (410)
T ss_pred EeCCCC-C-ccchHHHHHHHHHHHHHHcCCCEEEEE-cCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHC
Confidence 999999 5 899999998888888899999988864 2459999999999999999999999997555455688889999
Q ss_pred Cc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-Ccc
Q 012606 192 GK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGD 269 (460)
Q Consensus 192 Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~n 269 (460)
|| |+.|+.+..+..+...++ + +.|+.+ .....|++... +++
T Consensus 169 GA~Vi~v~~g~~~~~dA~~ea-~---------~~~~~~---------------------------~~~~~yi~gs~~gp~ 211 (410)
T PLN02618 169 GAEVRPVHSGTATLKDATSEA-I---------RDWVTN---------------------------VETTHYILGSVAGPH 211 (410)
T ss_pred CCEEEEEeCCCCCHHHHHHHH-H---------HHHHhc---------------------------cCCCEEEecCcCCCC
Confidence 99 999964221222222111 1 122211 01123433211 223
Q ss_pred h---HHHHHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChh-------hHHHH
Q 012606 270 A---VALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID-------GYKQQ 338 (460)
Q Consensus 270 p---~~~~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~-------~~~~~ 338 (460)
| ...+++.+++.||.+|+. ..+..||+||+|||||||++|++.+|+. +++++|||||++++.. .+...
T Consensus 212 P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g 290 (410)
T PLN02618 212 PYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKG 290 (410)
T ss_pred CCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcC
Confidence 3 234677788999999972 2224799999999999999999999974 7899999999998521 01100
Q ss_pred HHhHHHHH--------------HHHhccccccCCcccccchhhHHhhh-cCCCeEEeCcHHHHHHHHHHHHHhCCccccc
Q 012606 339 EKNLISEF--------------KRLFGFLLKKSSLNEVDGEIVHWVER-CRPRKFGNVFEGEIEACHRIAQLTGILVDPV 403 (460)
Q Consensus 339 ~~~l~~~~--------------~~~i~~~~~p~~~~~~~~~~~~l~~~-~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ 403 (460)
..+..++. ..++..++ .++.+++. +.++++ ..+..+.|+|+|+++++++|+++|||+++++
T Consensus 291 ~~gv~~g~~~~~l~~~~g~~~~~~sia~gl---~~pgvgp~-~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~s 366 (410)
T PLN02618 291 EVGVLHGAMSYLLQDEDGQIIEPHSISAGL---DYPGVGPE-HSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALE 366 (410)
T ss_pred CcceeccccccccccccCCCCCCcchhhhh---cCCCCcHH-HHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchh
Confidence 00000000 00111111 11222333 344554 5667889999999999999999999999996
Q ss_pred chHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhHHHH
Q 012606 404 YTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQR 443 (460)
Q Consensus 404 ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~~~r 443 (460)
|++++|++++++++ +.++++||+++|| |..++....+.
T Consensus 367 -Sa~a~a~a~~~a~~-l~~~~~iVv~lsgrG~Kd~~~v~~~ 405 (410)
T PLN02618 367 -TSHALAYLEKLCPT-LPDGTKVVVNCSGRGDKDVNTAIKY 405 (410)
T ss_pred -HHHHHHHHHHHhHh-cCCCCEEEEEeCCCCcCCHHHHHHH
Confidence 78999999988764 5678899999999 88888776543
No 12
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=9.6e-48 Score=401.70 Aligned_cols=335 Identities=16% Similarity=0.119 Sum_probs=245.9
Q ss_pred CCceeEeeecHHHHHHHHhhhhhhhcCCCcchhhhhcccc-------ccccCCCCCcccccCCCCCcccCCcccccCCCc
Q 012606 35 PQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTT-------TEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR 107 (460)
Q Consensus 35 ~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~ 107 (460)
-.|++++.|+.+.+........|. .....+|++..++| ..-+|+|||+++ ++|+ +.+| ..
T Consensus 39 cg~~l~~~y~~~~~~~~~~~~~~~--~~~~~~wry~~~lp~~~~~~v~l~eG~TPLv~~--~~l~-~~lG--------~~ 105 (421)
T PRK07591 39 CFGPLEVAYDYDAIRKRVSRESIE--AGPKSIWRYRDLLPVPADNPVDLGPGFTPLVKA--DRLA-RELG--------LK 105 (421)
T ss_pred CCCeEEEEechhhhccccChhhhh--ccccchhcchhhCccccCCCCcCCCCCCcceEh--HHHH-HHhC--------CC
Confidence 358999999977554221101110 01123343333322 235699999999 8887 4442 25
Q ss_pred eEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHH
Q 012606 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLI 187 (460)
Q Consensus 108 ~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~ 187 (460)
+||+|+|++| | +||||||++.+++..|++.|.++||+ +|+||||+|+|++|+++|++|+||||...+. .+..+
T Consensus 106 ~l~~K~E~~n-P-tGSfKdRga~~~v~~A~~~g~~~vv~--aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~---~k~~~ 178 (421)
T PRK07591 106 NLYIKDDSVN-P-THSFKDRVVSVALTAARELGFTTVAC--ASTGNLANSVAAHAARAGLDSCVFIPADLEA---GKIVG 178 (421)
T ss_pred cEEEEeCCCC-C-ccChHHHHHHHHHHHHHHcCCCEEEE--eCCCHHHHHHHHHHHHcCCCEEEEEcCCCCH---HHHHH
Confidence 8999999999 7 89999999999999999999999987 3789999999999999999999999997653 45667
Q ss_pred HHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC
Q 012606 188 STIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG 266 (460)
Q Consensus 188 ~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 266 (460)
++.||| |+.|++. |++..+.. +++ .+..++.|+++ .
T Consensus 179 ~~~~GA~Vi~v~g~-~d~a~~~a----~~~-------------------------------------~~~~~~~~~~n-~ 215 (421)
T PRK07591 179 TLVYGPTLVAVDGN-YDDVNRLC----SEL-------------------------------------ANEHEGWGFVN-I 215 (421)
T ss_pred HHHcCCEEEEECCC-HHHHHHHH----HHH-------------------------------------HHhcCCEEEec-C
Confidence 899999 9999864 65432221 111 11122344443 2
Q ss_pred CcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhc-------CCCCeEEEEeccCChhhHHHHH
Q 012606 267 AGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL-------GLPWEVTAIALVDTIDGYKQQE 339 (460)
Q Consensus 267 ~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~-------g~~~~vigVe~~g~~~~~~~~~ 339 (460)
..||..++|++++++||++|+ ++..||+||+|+|+||+++|++++|+++ ++.++|||||++++.+.+....
T Consensus 216 ~~~p~~ieG~~Tia~Ei~eQl--~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~ 293 (421)
T PRK07591 216 NLRPYYAEGSKTLGYEVAEQL--GWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFK 293 (421)
T ss_pred CCCcccccchHHHHHHHHHHc--CCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHH
Confidence 346777889999999999996 4435999999999999999999999986 5789999999998655443221
Q ss_pred HhH-------HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHH
Q 012606 340 KNL-------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMA 412 (460)
Q Consensus 340 ~~l-------~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal 412 (460)
.+. .+.+++.+. ++.+.. ....+.+++++.+..+.|+|+|+++++++|++++||++||+ +|+++|++
T Consensus 294 ~g~~~~~~~~~~tia~~l~---~~~p~~--~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~eps-saaalAal 367 (421)
T PRK07591 294 EGRDVVKPVKPNTIAKSLA---IGNPAD--GPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETA-GGVTVAVL 367 (421)
T ss_pred cCCCcccCCCCCchhhhee---cCCCCC--cHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecch-HHHHHHHH
Confidence 110 112222221 111111 12356678899999999999999999999999999999995 89999999
Q ss_pred HHHhhh-cCCCCCeEEEEecC-CCcchhhH
Q 012606 413 TLLSDE-KLKQDADVVMLHTG-GTLGMFGL 440 (460)
Q Consensus 413 ~~~~~~-~~~~g~~Vv~i~TG-G~~~~~~~ 440 (460)
+++.++ .+.++++||+|+|| |+.+....
T Consensus 368 ~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 368 KKLVEAGKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred HHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence 998764 36678999999999 99996653
No 13
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.2e-46 Score=389.39 Aligned_cols=344 Identities=15% Similarity=0.066 Sum_probs=248.6
Q ss_pred ceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEe
Q 012606 37 GICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (460)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKr 113 (460)
|..=-+|+||++++.|++ +.|.....|.+|+++ ...+..|++++|||+++ ++|+ +.+| +.+||+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~--~~l~-~~~g--------~~~iy~K~ 72 (385)
T TIGR00263 4 GDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFA--PNLT-EALG--------GAKIYLKR 72 (385)
T ss_pred CCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceeh--HHHH-HHhC--------CCeEEEEe
Confidence 334458999999999988 888888888999998 77777889999999999 8887 5442 47999999
Q ss_pred CCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 012606 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 114 Edln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga 193 (460)
|++| | +||||+|.+..++..+++.|.+++|+. +|+||||+|+|++|+++|++|+||||+...+....|+.+|+.|||
T Consensus 73 E~~n-p-tGS~K~R~a~~~~~~a~~~g~~~vi~e-~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA 149 (385)
T TIGR00263 73 EDLN-H-TGAHKINNALGQALLAKRMGKKRIIAE-TGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGA 149 (385)
T ss_pred CCCC-C-CccchHHHHHHHHHHHHHcCCCEEEEE-cCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCC
Confidence 9999 7 899999999998888888898887753 356999999999999999999999998533222246678999998
Q ss_pred -EEEeCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCC-cEEEecCC-Cc
Q 012606 194 -VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRK-KVLIVNEG-AG 268 (460)
Q Consensus 194 -V~~v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~y~ip~g-~~ 268 (460)
|+.|+.+ .+++ .....++.+ .+..+ .+|+.+.. +.
T Consensus 150 ~Vv~v~~~~~~~~~---a~~~~~~~~-------------------------------------~~~~~~~~y~~~~~~~~ 189 (385)
T TIGR00263 150 KVIPVTSGSGTLKD---AVNEALRDW-------------------------------------VTSVDDTHYVLGSAVGP 189 (385)
T ss_pred EEEEECCCCCCHHH---HHHHHHHHH-------------------------------------HHhcCCceEEeCCcCCC
Confidence 9999753 2332 111111110 11111 23433221 11
Q ss_pred c--hHH-HHHHHHHHHHHHHhHHc-CCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhh----HHHHHH
Q 012606 269 D--AVA-LLGVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDG----YKQQEK 340 (460)
Q Consensus 269 n--p~~-~~G~~t~~~Ei~eq~~~-~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~----~~~~~~ 340 (460)
+ |.. ..|+.+++.||++|+.. .+..||+||+|||||||++|++.+|.+ .++++|||||++++... ..+...
T Consensus 190 ~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~ 268 (385)
T TIGR00263 190 HPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAK 268 (385)
T ss_pred CCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhc
Confidence 2 232 36788999999999741 123589999999999999999999964 68999999999985211 111100
Q ss_pred hH---HHH------------H--HHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCccccc
Q 012606 341 NL---ISE------------F--KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPV 403 (460)
Q Consensus 341 ~l---~~~------------~--~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ 403 (460)
+. ..+ + ..+++.+ ...+.+.+..+.+.+...++.+.|+|+|+++++++|++++||++||+
T Consensus 269 g~~~~~~~~~~~~~~~~~~~~~~~~tia~g---l~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~s 345 (385)
T TIGR00263 269 GSPGVLHGMKTYLLQDEDGQILEAHSVSAG---LDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALE 345 (385)
T ss_pred CCeeEecCcccccccCCCCcccccceeecc---ccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechH
Confidence 00 000 0 0011111 11122233455566666677899999999999999999999999996
Q ss_pred chHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhH
Q 012606 404 YTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGL 440 (460)
Q Consensus 404 ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~ 440 (460)
+|++++++++++++ +.++++||+++|| |+.++...
T Consensus 346 -saaalaa~~~~~~~-l~~~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 346 -SSHALAHLEKIAPT-LPKDQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred -HHHHHHHHHHHHHh-CCCCCeEEEEeCCCCcCCHHHH
Confidence 78999999887654 5568999999999 99997764
No 14
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-46 Score=407.58 Aligned_cols=358 Identities=14% Similarity=0.096 Sum_probs=262.5
Q ss_pred cCCCCceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCce
Q 012606 32 SNSPQGICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC 108 (460)
Q Consensus 32 ~~~~~~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~ 108 (460)
.|..-|..=-.|+||+||++|+| ..|.....|++|+++ ..++++|++++|||+++ ++|+ +.+ |++
T Consensus 220 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~--~~Ls-~~~---------G~~ 287 (610)
T PRK13803 220 PAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEA--KRLS-DIY---------GAR 287 (610)
T ss_pred CCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeH--HHHH-Hhh---------CCE
Confidence 34556788889999999999998 899999999999988 88889999999999999 9998 443 679
Q ss_pred EEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHH
Q 012606 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIS 188 (460)
Q Consensus 109 l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~ 188 (460)
||+||||+| | +||||+|.+...+..|+++|++++|+.. ++||||+|+|++|+++|++|+||||..+++++..|+.+|
T Consensus 288 IylK~E~ln-p-tGS~K~r~al~~~~~a~~~g~~~vi~e~-gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m 364 (610)
T PRK13803 288 IYLKREDLN-H-TGSHKINNALGQALLAKRMGKTRIIAET-GAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERM 364 (610)
T ss_pred EEEEeCCCC-C-cccHHHHHHHHHHHHHHHcCCCEEEEec-ChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHH
Confidence 999999999 5 8999999988888888999998888632 459999999999999999999999987655455678889
Q ss_pred HhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-
Q 012606 189 TIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG- 266 (460)
Q Consensus 189 ~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g- 266 (460)
++||| |+.|+.+..+..+...++ + ..|+ .+.....|+++..
T Consensus 365 ~~~GA~Vi~v~~~~~~~~~a~~~a-~---------~~~~---------------------------~~~~~~~y~~~~~~ 407 (610)
T PRK13803 365 KLLGANVIPVLSGSKTLKDAVNEA-I---------RDWV---------------------------ASVPDTHYLIGSAV 407 (610)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHH-H---------HHHH---------------------------HhCCCcEEEeCCcC
Confidence 99999 999986432222222211 0 1121 0111233444332
Q ss_pred Ccc--hHHH-HHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChh-------hH
Q 012606 267 AGD--AVAL-LGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID-------GY 335 (460)
Q Consensus 267 ~~n--p~~~-~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~-------~~ 335 (460)
+.+ |..+ .|+.+++.||++|+. ..+..||+||+|||||||++|++.+|+ .+++++|||||+.++.. .+
T Consensus 408 g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~-~~~~v~iigVE~~g~~~~~~~~~a~l 486 (610)
T PRK13803 408 GPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFL-DDPSVKLIGVEAGGKGVNTGEHAATI 486 (610)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHh-hCCCceEEEEecCCCCcccccccchh
Confidence 223 4444 477889999999984 122479999999999999999999997 47899999999988521 11
Q ss_pred HHHHHhHHHHH--------------HHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCccc
Q 012606 336 KQQEKNLISEF--------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVD 401 (460)
Q Consensus 336 ~~~~~~l~~~~--------------~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vE 401 (460)
.....+..++. ..++..+ ...+.+++..+.+.+...++.+.|+|+|+++++++|++.+||+++
T Consensus 487 ~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~g---l~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~ 563 (610)
T PRK13803 487 KKGRKGVLHGSMTYLMQDENGQILEPHSISAG---LDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPA 563 (610)
T ss_pred hcCCeeeeccceeeeecccCCcccCCceeecc---CCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccC
Confidence 11000000100 0011111 112223344444555555568899999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhHHHHHHHHh
Q 012606 402 PVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQRYKSSF 448 (460)
Q Consensus 402 P~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~~~ry~~~~ 448 (460)
++ ||+++|++++++. .+.++++||+++|| |+.++... .+|...|
T Consensus 564 ~s-sa~alA~~~~~~~-~~~~~~~Vvv~lsG~G~kd~~~~-~~~~~~~ 608 (610)
T PRK13803 564 LE-SSHALAYLKEGRK-KFKKKDIVIVNLSGRGDKDIPTL-KEYFENL 608 (610)
T ss_pred cH-HHHHHHHHHHhch-hcCCCCeEEEEeCCCCcCCHHHH-HHHHhhc
Confidence 96 7899999988754 35668899999999 99998765 3444433
No 15
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.9e-46 Score=405.72 Aligned_cols=356 Identities=14% Similarity=0.077 Sum_probs=254.0
Q ss_pred CCCceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCC-CceE
Q 012606 34 SPQGICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDE-DRCF 109 (460)
Q Consensus 34 ~~~~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~-g~~l 109 (460)
..-|..=-.|+||+||++|.| ..|.....|++|+++ ..++.+|+|+||||+++ ++|+ +.+. +.++ +++|
T Consensus 277 ~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~--~~Ls-~~l~----~~~G~g~~I 349 (695)
T PRK13802 277 PYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEA--PRFA-ERVK----EKTGLDARV 349 (695)
T ss_pred CCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEc--hhhh-hhhH----hhcCCCceE
Confidence 345777889999999999998 899999999999998 88889999999999999 8887 3210 1122 4799
Q ss_pred EEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEE-EeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHH
Q 012606 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV-TCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIS 188 (460)
Q Consensus 110 ~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VV-t~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~ 188 (460)
|+||||+| | +||||+|.+.+++..|+++|++++| ++ |+||||+|+|++|+++|++|+||||+.++..+..|+.+|
T Consensus 350 ylK~E~lN-p-TGS~KdR~Al~~i~~A~~~G~~~~Ivet--ssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~m 425 (695)
T PRK13802 350 FLKREDLN-H-TGAHKINNALGQALLVKRMGKTRVIAET--GAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARM 425 (695)
T ss_pred EEEEccCC-C-cCCcHHHHHHHHHHHHHHcCCCCEEEEE--CcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHH
Confidence 99999999 6 8999999999999999999987555 55 469999999999999999999999987654555688899
Q ss_pred HhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-
Q 012606 189 TIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG- 266 (460)
Q Consensus 189 ~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g- 266 (460)
++||| |+.|+.+.....+...++ ++ .|.. +....+|+++..
T Consensus 426 r~lGAeVi~v~~g~~~l~~Ai~ea-~~---------~~~~---------------------------~~~~~~y~i~~~~ 468 (695)
T PRK13802 426 RMLGAEVVEVTLGDRILKDAINEA-LR---------DWVT---------------------------NVKDTHYLLGTVA 468 (695)
T ss_pred HHcCCEEEEECCCCCcHHHHHHHH-HH---------HHHH---------------------------hcCCceEeecccC
Confidence 99999 999985432211221111 11 1221 111234555543
Q ss_pred CcchH---HHHHHHHHHHHHHHhHHc-CC-CCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHh
Q 012606 267 AGDAV---ALLGVFRLLQYLSQDHLL-GR-KRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKN 341 (460)
Q Consensus 267 ~~np~---~~~G~~t~~~Ei~eq~~~-~~-~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~ 341 (460)
+.||. ...|+.++|.||++|+.. .+ +.||+||+|||||||++|++.+|++ .+.++|||||+.++..........
T Consensus 469 g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~ 547 (695)
T PRK13802 469 GPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIR 547 (695)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhh
Confidence 23442 347889999999999841 11 2699999999999999999999975 688999999998853211111111
Q ss_pred H---------HHHHHHH---------hccccc--cCCcccccchhhHHhhhcCCCe--EEeCcHHHHHHHHHHHHHhCCc
Q 012606 342 L---------ISEFKRL---------FGFLLK--KSSLNEVDGEIVHWVERCRPRK--FGNVFEGEIEACHRIAQLTGIL 399 (460)
Q Consensus 342 l---------~~~~~~~---------i~~~~~--p~~~~~~~~~~~~l~~~~~~~~--~~v~d~e~~~a~r~La~~eGI~ 399 (460)
+ .++.... +...++ +..++.+++. ..+.++ .++. +.|+|+|+++++++|+++|||+
T Consensus 548 ~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~-~~~l~~-~~rv~~~~vtD~eal~a~~~La~~EGIi 625 (695)
T PRK13802 548 FAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPE-HAWLKD-IGRVNYSWATDEEAMNAFKDLCETEGII 625 (695)
T ss_pred hhhccCCccccccceeecccCCCCCccCccccccccCCCCCCch-hHHHHh-cCCeEEEEECHHHHHHHHHHHHHHcCcc
Confidence 1 1110000 000010 1111122222 122222 3444 7899999999999999999999
Q ss_pred ccccchHHHHHHHHHHhhhcCC---CCCeEEEEecC-CCcchhhHH
Q 012606 400 VDPVYTLAAWEMATLLSDEKLK---QDADVVMLHTG-GTLGMFGLA 441 (460)
Q Consensus 400 vEP~ysgaa~Aal~~~~~~~~~---~g~~Vv~i~TG-G~~~~~~~~ 441 (460)
++|. |+.++|++++++++.-. .+++||+++|| |..++....
T Consensus 626 pa~e-S~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~ 670 (695)
T PRK13802 626 PAIE-SSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAG 670 (695)
T ss_pred ccch-HHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHH
Confidence 9996 78999999998764211 25589999999 889988843
No 16
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.4e-46 Score=377.88 Aligned_cols=291 Identities=15% Similarity=0.109 Sum_probs=221.7
Q ss_pred CCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC---CCeEEEeCCccchHHH
Q 012606 80 GGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHAT 156 (460)
Q Consensus 80 ~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g---~~~VVt~Gas~GNhg~ 156 (460)
+|||+++ ++++ +.+ |++||+|+|++| | +||||+|++.++|.+++++| .++||++ |+||||+
T Consensus 1 ~TPl~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~~~vv~a--SsGN~g~ 64 (316)
T cd06448 1 KTPLIES--TALS-KTA---------GCNVFLKLENLQ-P-SGSFKIRGIGHLCQKSAKQGLNECVHVVCS--SGGNAGL 64 (316)
T ss_pred CCCcccc--chhh-Hhh---------CCeEEEEeccCC-C-cCChHHHHHHHHHHHHHHhhcccCCeEEEe--CCcHHHH
Confidence 6999999 8887 433 679999999998 7 89999999999999999988 7889985 5699999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
|+|++|+.+|++|+||||+..++. +..+++.||| |+.+++..++...+. +++
T Consensus 65 alA~~a~~~G~~~~iv~p~~~~~~---k~~~l~~~GA~v~~~~~~~~~~~~~~----~~~-------------------- 117 (316)
T cd06448 65 AAAYAARKLGVPCTIVVPESTKPR---VVEKLRDEGATVVVHGKVWWEADNYL----REE-------------------- 117 (316)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECCchHHHHHHH----HHH--------------------
Confidence 999999999999999999987543 4567899999 999986423322111 111
Q ss_pred hhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCC-CCCCEEEEecCCchhHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGR-KRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~-~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
+++..++.|++ .+..||...+||.+++.||++|+. + ..||+||+|+|||||++|++++|
T Consensus 118 -----------------l~~~~~~~~~~-~~~~n~~~~~g~~t~~~Ei~~q~~--~~~~~D~vv~~vG~Gg~~~Gv~~~~ 177 (316)
T cd06448 118 -----------------LAENDPGPVYV-HPFDDPLIWEGHSSMVDEIAQQLQ--SQEKVDAIVCSVGGGGLLNGIVQGL 177 (316)
T ss_pred -----------------HHhccCCcEEe-CCCCCchhhccccHHHHHHHHHcc--ccCCCCEEEEEeCchHHHHHHHHHH
Confidence 12222233333 334689999999999999999973 2 25999999999999999999999
Q ss_pred HhcC-CCCeEEEEeccCChhhHHHHHHhH------HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHH
Q 012606 315 ICLG-LPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIE 387 (460)
Q Consensus 315 ~~~g-~~~~vigVe~~g~~~~~~~~~~~l------~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~ 387 (460)
++.+ ++++||||||++++........+. .+.+++.++. +.+++..+.+.++..++.+.|+|+|+++
T Consensus 178 k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~-------~~~~~~~~~~~~~~~~~~v~Vsd~e~~~ 250 (316)
T cd06448 178 ERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGA-------KTVSSQALEYAQEHNIKSEVVSDRDAVQ 250 (316)
T ss_pred HhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCC-------CCcCHHHHHHHHhcCCeEEEECHHHHHH
Confidence 9987 899999999999865433211110 0122222221 1122334666777788899999999999
Q ss_pred HHHHHHHHhCCcccccchHHHHHHHHHHh-----hh-cCCCCCeEEEEecCCCc-chhhHH
Q 012606 388 ACHRIAQLTGILVDPVYTLAAWEMATLLS-----DE-KLKQDADVVMLHTGGTL-GMFGLA 441 (460)
Q Consensus 388 a~r~La~~eGI~vEP~ysgaa~Aal~~~~-----~~-~~~~g~~Vv~i~TGG~~-~~~~~~ 441 (460)
++++|++++||++||+ +|+++|++++.. ++ .+.++++||+|+||||. +...+.
T Consensus 251 a~~~l~~~~gi~~~~s-saa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~~~ 310 (316)
T cd06448 251 ACLRFADDERILVEPA-CGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQLK 310 (316)
T ss_pred HHHHHHHHcCceechh-HHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHHHH
Confidence 9999999999999996 789999987532 11 35678999999999998 876643
No 17
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=378.09 Aligned_cols=290 Identities=14% Similarity=0.059 Sum_probs=221.7
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC--CCeEEEeCCccchHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI--VTDLVTCGGCQSAHAT 156 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g--~~~VVt~Gas~GNhg~ 156 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++..+.+++ .+.||+ +|+||||+
T Consensus 20 ~~TPl~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~K~Rga~~~l~~a~~~~~~~~~vv~--aSsGN~g~ 83 (322)
T PRK06110 20 PPTPQYRW--PLLA-ERL---------GCEVWVKHENHT-P-TGAFKVRGGLVYFDRLARRGPRVRGVIS--ATRGNHGQ 83 (322)
T ss_pred cCCCcccc--hhHH-HHh---------CCeEEEEeccCC-C-cCCcHHHHHHHHHHHhhhhcCCCceEEE--ECCCHHHH
Confidence 89999999 8887 433 679999999999 7 89999999999999987764 466776 47899999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
|+|++|+++|++|+||||...+.. +..+++.||| |+.+++ .+++.... +++
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~---k~~~i~~~GA~V~~~~~-~~~~~~~~----a~~-------------------- 135 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVE---KNAAMRALGAELIEHGE-DFQAAREE----AAR-------------------- 135 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHH----HHH--------------------
Confidence 999999999999999999987643 3457899998 998875 35432221 111
Q ss_pred hhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~ 315 (460)
+.+. .++|++|.. ||...+||.+++.||++|+ +.+|+||+|+||||+++|++.+|+
T Consensus 136 -----------------~~~~-~~~~~~~~~--~~~~~~G~~t~~~Ei~~q~----~~~D~vv~pvG~Gg~~~Gv~~~~k 191 (322)
T PRK06110 136 -----------------LAAE-RGLHMVPSF--HPDLVRGVATYALELFRAV----PDLDVVYVPIGMGSGICGAIAARD 191 (322)
T ss_pred -----------------HHHh-cCCEEcCCC--CChHHhccchHHHHHHhhC----CCCCEEEEecCHHHHHHHHHHHHH
Confidence 1111 235666643 5677889999999999996 368999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhhHHHHHHhH-HH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 316 CLGLPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 316 ~~g~~~~vigVe~~g~~~~~~~~~~~l-~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
+.+++++|||||+++++........+. .. ....+++.++ ....+.+..+.+++++.++.+.|+|+|+++++++|+
T Consensus 192 ~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl---~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~ 268 (322)
T PRK06110 192 ALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGM---ACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYF 268 (322)
T ss_pred HhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCccccc---CCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHH
Confidence 999999999999998765433221110 00 0001222221 111112335667788999999999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHH
Q 012606 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ 442 (460)
+++|+++||+ +++++++++++.+. .++++||+|+||||+|+..+.+
T Consensus 269 ~~~gi~~e~s-saa~laa~~~~~~~--~~~~~Vv~i~tGgn~d~~~~~~ 314 (322)
T PRK06110 269 TDTHNVAEGA-GAAALAAALQERER--LAGKRVGLVLSGGNIDRAVFAR 314 (322)
T ss_pred HHcCcEEehH-HHHHHHHHHhChhh--hCCCcEEEEECCCCCCHHHHHH
Confidence 9999999996 78999999886543 3578999999999999877544
No 18
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.8e-46 Score=398.56 Aligned_cols=296 Identities=15% Similarity=0.090 Sum_probs=230.5
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHH-HhcCCCeEEEeCCccchHHH
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a-~~~g~~~VVt~Gas~GNhg~ 156 (460)
-++|||+++ ++|+ +.+ |++||+|+|++| | +||||+|.+.+.+.++ .++..++||++ |+||||+
T Consensus 107 i~~TPL~~s--~~LS-~~~---------g~~IylK~E~lq-p-tGSFK~RGA~n~I~~L~~e~~~~GVV~a--SaGNhAq 170 (591)
T PLN02550 107 AIESPLQLA--KKLS-ERL---------GVKVLLKREDLQ-P-VFSFKLRGAYNMMAKLPKEQLDKGVICS--SAGNHAQ 170 (591)
T ss_pred ccCChhhhh--HHhh-Hhh---------CCEEEEEEcCCC-C-CCcHHHHHHHHHHHHHHHhcCCCCEEEE--CCCHHHH
Confidence 389999999 9988 443 679999999999 6 8999999999999887 55666789984 7899999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
++|++|+++|++|+||||..+|.. +...++.||| |++++. .|++..+. |+++
T Consensus 171 gvA~aA~~lGika~IvmP~~tp~~---Kv~~~r~~GAeVvl~g~-~~dea~~~----A~~l------------------- 223 (591)
T PLN02550 171 GVALSAQRLGCDAVIAMPVTTPEI---KWQSVERLGATVVLVGD-SYDEAQAY----AKQR------------------- 223 (591)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCC-CHHHHHHH----HHHH-------------------
Confidence 999999999999999999988754 3456799998 999975 46542222 2221
Q ss_pred hhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~ 315 (460)
.+..+..|+.|. .||..+.|+.|+|.||++|+. ..+|+||+|+||||+++|++.+++
T Consensus 224 ------------------a~e~g~~fi~pf--ddp~viaGqgTig~EI~eQl~---~~~D~VvvpVGgGGLiaGia~~lK 280 (591)
T PLN02550 224 ------------------ALEEGRTFIPPF--DHPDVIAGQGTVGMEIVRQHQ---GPLHAIFVPVGGGGLIAGIAAYVK 280 (591)
T ss_pred ------------------HHhcCCEEECCC--CChHHHHHHHHHHHHHHHHcC---CCCCEEEEEeChhHHHHHHHHHHH
Confidence 112223555544 467778899999999999972 258999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhhHHHHHHhH-HH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 316 CLGLPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 316 ~~g~~~~vigVe~~g~~~~~~~~~~~l-~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
+++|+++|||||+++++....+...+. +. ....++++++ .+..+++.++.+++++.|+++.|+|+|+.+|+++++
T Consensus 281 ~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGi---av~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~ 357 (591)
T PLN02550 281 RVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGV---AVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMF 357 (591)
T ss_pred HhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCcccee---ecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHH
Confidence 999999999999999876543322211 00 0001222221 223344567888999999999999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHH
Q 012606 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQR 443 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~r 443 (460)
+++|+++||+ +|+++||++++.+....++++||+|+||||+|...+..-
T Consensus 358 e~~givvEpA-GA~alAall~~~~~~~~~g~~Vv~vlsGgNid~~~l~~v 406 (591)
T PLN02550 358 EEKRSILEPA-GALALAGAEAYCKYYGLKDENVVAITSGANMNFDRLRIV 406 (591)
T ss_pred HHCCCEEeHH-HHHHHHHHHHHHHhcCCCCCeEEEEecCCCCCHHHHHHH
Confidence 9999999997 789999999876532236889999999999998776544
No 19
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.3e-45 Score=372.90 Aligned_cols=291 Identities=15% Similarity=0.129 Sum_probs=219.6
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~Al 158 (460)
|+|||+++ ++|+ +.+| ..+||+|+|++| | +||||+|++.+++.+|+++|.++||++ |+||||+|+
T Consensus 14 g~TPL~~~--~~l~-~~~G--------~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~lv~a--SsGN~g~al 78 (319)
T PRK06381 14 GGTPLLRA--RKLE-EELG--------LRKIYLKFEGAN-P-TGTQKDRIAEAHVRRAMRLGYSGITVG--TCGNYGASI 78 (319)
T ss_pred CCCceeEh--HhhH-HhcC--------CceEEEEecCCC-C-ccCcHHHHHHHHHHHHHHcCCCEEEEe--CCcHHHHHH
Confidence 89999999 8887 4442 268999999998 7 899999999999999999999999973 679999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhh
Q 012606 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (460)
Q Consensus 159 A~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~ 237 (460)
|++|+.+|++|+||||...+. .+..+++.||| |+.+++. |++.... +++
T Consensus 79 A~~aa~~G~~~~ivvp~~~~~---~~~~~l~~~GA~V~~~~~~-~~~~~~~----a~~---------------------- 128 (319)
T PRK06381 79 AYFARLYGLKAVIFIPRSYSN---SRVKEMEKYGAEIIYVDGK-YEEAVER----SRK---------------------- 128 (319)
T ss_pred HHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEcCCC-HHHHHHH----HHH----------------------
Confidence 999999999999999998754 34567899999 9999864 5432211 111
Q ss_pred hhhhcccccccccccccccCCcEEEecCCCcch-HHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDA-VALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np-~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+.+. +.+|+++.++.|| ...+||.++++||++|+ + ..||+||+|+|||||++|++++|++
T Consensus 129 ---------------~~~~-~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql--~-~~~D~vv~~vGtGgt~~Gl~~~~~~ 189 (319)
T PRK06381 129 ---------------FAKE-NGIYDANPGSVNSVVDIEAYSAIAYEIYEAL--G-DVPDAVAVPVGNGTTLAGIYHGFRR 189 (319)
T ss_pred ---------------HHHH-cCcEecCCCCCCcchHhhhHHHHHHHHHHHh--C-CCCCEEEEcCCccHHHHHHHHHHHH
Confidence 1111 2456665555566 67899999999999997 2 3699999999999999999999998
Q ss_pred c------CCCCeEEEEeccCChhhHHHHHHhH--HHHH-HHHhcc-ccc-cC-Ccc-cccchhhHHhhhcCCCeEEeCcH
Q 012606 317 L------GLPWEVTAIALVDTIDGYKQQEKNL--ISEF-KRLFGF-LLK-KS-SLN-EVDGEIVHWVERCRPRKFGNVFE 383 (460)
Q Consensus 317 ~------g~~~~vigVe~~g~~~~~~~~~~~l--~~~~-~~~i~~-~~~-p~-~~~-~~~~~~~~l~~~~~~~~~~v~d~ 383 (460)
+ ++.++|||||+.++.....+...+. ..+. ...+.. ++. |. .+. ......+.++.++.++.|.|+|+
T Consensus 190 ~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~ 269 (319)
T PRK06381 190 LYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDD 269 (319)
T ss_pred HHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHH
Confidence 7 7889999999988654332221110 0000 001111 000 10 000 00113455678889999999999
Q ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCc
Q 012606 384 GEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (460)
Q Consensus 384 e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~ 435 (460)
|+++++++|++++||++||+ +|+++|+++++.++. ..+++||+|||||..
T Consensus 270 e~~~a~~~la~~egi~~eps-sa~alaa~~~~~~~~-~~~~~vv~i~tGg~~ 319 (319)
T PRK06381 270 EMVKYAELLRRMEGLNALPA-SASALAALVKYLKKN-GVNDNVVAVITGRRQ 319 (319)
T ss_pred HHHHHHHHHHHhCCcccCch-HHHHHHHHHHHHHcC-CCCCcEEEEecCCCC
Confidence 99999999999999999998 789999999987643 124899999999963
No 20
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=8.9e-46 Score=384.29 Aligned_cols=332 Identities=17% Similarity=0.128 Sum_probs=239.9
Q ss_pred CceeEeeecHHHHHHHHhhhhhhhcCCCcchhhhhcccc--------ccccCCCCCcccccCCCCCcccCCcccccCCCc
Q 012606 36 QGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTT--------TEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR 107 (460)
Q Consensus 36 ~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~ 107 (460)
.|++++.|+.+.+...+....+. .....+||+..++| ..-+|+|||+++ ++++ +.+| ..
T Consensus 29 g~~l~~~~d~~~~~~~~~~~~~~--~~~~~~~ry~~~lp~~~~~~~vslgeG~TPL~~~--~~l~-~~~G--------~~ 95 (394)
T PRK08197 29 GKPLLVRYDLEAVKQAVTREALA--GRPANLWRYHELLPVRDPEHIVSLGEGMTPLLPL--PRLG-KALG--------IG 95 (394)
T ss_pred CCeeEEEechhhhhhccchhhhc--cCCcchhcchhhCCCCCCCCCCccCcCCCCceEh--HHHH-HHhC--------CC
Confidence 58999999977554333111111 11233444433332 134699999999 8887 4432 25
Q ss_pred eEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHH
Q 012606 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLI 187 (460)
Q Consensus 108 ~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~ 187 (460)
+||+|+|++| | +||||||++.+++..|++.|.++||+. |+||||+|+|++|+++|++|+||||+..++ .+..+
T Consensus 96 ~l~~K~E~~n-P-tGSfKdRga~~~i~~a~~~g~~~vv~a--SsGN~g~alA~~aa~~G~~~~v~vp~~~~~---~k~~~ 168 (394)
T PRK08197 96 RLWVKDEGLN-P-TGSFKARGLAVGVSRAKELGVKHLAMP--TNGNAGAAWAAYAARAGIRATIFMPADAPE---ITRLE 168 (394)
T ss_pred cEEEEeCCCC-C-CcCcHHhHHHHHHHHHHHcCCCEEEEe--CCcHHHHHHHHHHHHcCCcEEEEEcCCCCH---HHHHH
Confidence 8999999998 7 899999999999999999999999984 789999999999999999999999998764 35668
Q ss_pred HHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC
Q 012606 188 STIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG 266 (460)
Q Consensus 188 ~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 266 (460)
+++||| |+.+++ .+++..+.. ++++ +.. ..|+ ..+
T Consensus 169 ~~~~GA~Vi~v~~-~~~~~~~~a----~~~~-------------------------------------~~~-g~~~-~~~ 204 (394)
T PRK08197 169 CALAGAELYLVDG-LISDAGKIV----AEAV-------------------------------------AEY-GWFD-VST 204 (394)
T ss_pred HHHcCCEEEEECC-CHHHHHHHH----HHHH-------------------------------------Hhc-Cccc-ccC
Confidence 899998 999986 355322221 1111 111 2333 334
Q ss_pred CcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhc-------CCCCeEEEEeccCChhhHHHHH
Q 012606 267 AGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL-------GLPWEVTAIALVDTIDGYKQQE 339 (460)
Q Consensus 267 ~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~-------g~~~~vigVe~~g~~~~~~~~~ 339 (460)
..||..++|++|+++||++|+ ++..||+||+|+|+|++++|++++|+++ ++.++||+||++++........
T Consensus 205 ~~np~~ieG~~t~a~Ei~eQl--~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~ 282 (394)
T PRK08197 205 LKEPYRIEGKKTMGLELAEQL--GWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWE 282 (394)
T ss_pred CCCccchhcHHHHHHHHHHHc--CCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 467888899999999999997 4445999999999999999999999986 4789999999999865443221
Q ss_pred HhH--HHHH--HHHhcccc-ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHH
Q 012606 340 KNL--ISEF--KRLFGFLL-KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATL 414 (460)
Q Consensus 340 ~~l--~~~~--~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~ 414 (460)
.+. .... ..+++.++ ++.+.. ....+..++++.+..+.|+|+|+++++++|++++||++||+ +|+++|++++
T Consensus 283 ~g~~~~~~~~~~~tia~gl~~~~~~~--~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~veps-saaala~~~~ 359 (394)
T PRK08197 283 EGKEESEFWEDAHTVAFGIRVPKALG--DFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPE-GAATFAAARQ 359 (394)
T ss_pred cCCCccccCCCCCceehhhhCCCCCC--HHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECch-HHHHHHHHHH
Confidence 110 0000 01112111 111110 11234556788899999999999999999999999999997 8999999999
Q ss_pred Hhhh-cCCCCCeEEEEecCCCcc
Q 012606 415 LSDE-KLKQDADVVMLHTGGTLG 436 (460)
Q Consensus 415 ~~~~-~~~~g~~Vv~i~TGG~~~ 436 (460)
+.++ .+.++++||+|+||++.-
T Consensus 360 l~~~~~~~~~~~Vv~v~tG~g~k 382 (394)
T PRK08197 360 LRESGWLKGDERVVLFNTGSGLK 382 (394)
T ss_pred HHHcCCcCCCCcEEEEeCCCCcC
Confidence 8765 356688999999997644
No 21
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=4.1e-46 Score=386.90 Aligned_cols=297 Identities=14% Similarity=0.104 Sum_probs=225.3
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhc-CCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH-IVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~-g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ ..+ |++||+|+|++| | +||||+|.+.+.+..+.+. +.++||+ +|+||||++
T Consensus 19 ~~TPl~~~--~~Ls-~~~---------g~~iylK~E~lq-p-tGSfK~RgA~n~i~~l~~~~~~~gVV~--aSaGNhg~a 82 (403)
T PRK08526 19 NKTPFAYA--PFLS-KIS---------GAEVYLKKENLQ-I-TGAYKIRGAYNKIANLSEEQKQHGVIA--ASAGNHAQG 82 (403)
T ss_pred CCCCccch--HHHH-HHh---------CCeEEEEecCCC-C-CCCCHHHHHHHHHHhccHhhcCCEEEE--ECccHHHHH
Confidence 89999999 8888 443 679999999999 7 8999999999999877543 4578988 478999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||..+|.. +...++.||| |++++. .|++..+. |.++
T Consensus 83 vA~aa~~~Gi~~~IvmP~~~p~~---k~~~~r~~GA~Vv~~g~-~~~~a~~~----a~~~-------------------- 134 (403)
T PRK08526 83 VAISAKKFGIKAVIVMPEATPLL---KVSGTKALGAEVILKGD-NYDEAYAF----ALEY-------------------- 134 (403)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988654 3446899999 999875 46542221 1111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++..+.+|+.|. .||....|+.|++.||++|+ +.||+||+|+||||+++|++.++++
T Consensus 135 -----------------a~~~g~~~v~p~--~~~~~i~G~gtia~EI~eq~----~~~D~vvvpvGgGGl~aGia~~~k~ 191 (403)
T PRK08526 135 -----------------AKENNLTFIHPF--EDEEVMAGQGTIALEMLDEI----SDLDMVVVPVGGGGLISGIASAAKQ 191 (403)
T ss_pred -----------------HHhcCCEeeCCC--CCHHHHhhhHHHHHHHHHhc----CCCCEEEEecChHHHHHHHHHHHHH
Confidence 112223454443 46777889999999999996 3699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH-HH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l-~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
++|.++|||||+++++....+...+. .. ....++.+++ .+..+++..+.++.++.++.+.|+|+|+.+|+++|++
T Consensus 192 ~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgi---av~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~ 268 (403)
T PRK08526 192 INPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGI---AVRDASPINLAIILECVDDFVQVDDEEIANAILFLLE 268 (403)
T ss_pred hCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccc---cCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 99999999999999876543321110 00 0001222221 1122334566667788999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
++|+++||+ +++++|+++... ..+.++++||+|+||||+|...+..-..+-
T Consensus 269 ~~gi~ve~a-ga~~lAall~~~-~~~~~~~~Vv~ilsGGnid~~~~~~i~~~~ 319 (403)
T PRK08526 269 KQKIVVEGA-GAASVAALLHQK-IDLKKGKKIGVVLSGGNIDVQMLNIIIEKG 319 (403)
T ss_pred hcCcEeeHH-HHHHHHHHHhCc-cccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 999999996 788899987532 223468899999999999988876544433
No 22
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.1e-46 Score=394.51 Aligned_cols=299 Identities=15% Similarity=0.117 Sum_probs=229.1
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |++||+|+|++| | +||||+|++.+++..+. +.+.++||++ |+||||++
T Consensus 36 ~~TPL~~~--~~Ls-~~~---------g~~IylK~E~lq-p-tGSfK~RGA~n~i~~l~~~~~~~GVV~a--SaGNha~g 99 (521)
T PRK12483 36 RETPLQRA--PNLS-ARL---------GNQVLLKREDLQ-P-VFSFKIRGAYNKMARLPAEQLARGVITA--SAGNHAQG 99 (521)
T ss_pred CCCCeeEc--hhhh-Hhh---------CCEEEEEEcCCC-C-CCchHHHHHHHHHHHhHHHHhcCcEEEE--CCCHHHHH
Confidence 89999999 9888 443 679999999999 7 89999999999887654 4456779985 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||..+|.. +...++.||| |+.++. .|++..+. |.+++
T Consensus 100 vA~aA~~lGi~~~IvmP~~tp~~---Kv~~~r~~GAeVil~g~-~~d~a~~~----A~~la------------------- 152 (521)
T PRK12483 100 VALAAARLGVKAVIVMPRTTPQL---KVDGVRAHGGEVVLHGE-SFPDALAH----ALKLA------------------- 152 (521)
T ss_pred HHHHHHHhCCCEEEEECCCCCHH---HHHHHHHCCCEEEEECC-CHHHHHHH----HHHHH-------------------
Confidence 99999999999999999988754 4557899998 999875 46543222 22221
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+..+..|+.| ..||....|+.|++.||++|+ + ..||+||+|+||||+++|++.++++
T Consensus 153 ------------------~e~g~~~v~p--fdd~~viaGqgTig~EI~eQ~--~-~~~D~VvvpvGgGGliaGia~~~K~ 209 (521)
T PRK12483 153 ------------------EEEGLTFVPP--FDDPDVIAGQGTVAMEILRQH--P-GPLDAIFVPVGGGGLIAGIAAYVKY 209 (521)
T ss_pred ------------------HhcCCeeeCC--CCChHHHHHHHHHHHHHHHHh--C-CCCCEEEEecCccHHHHHHHHHHHH
Confidence 1122344443 346888889999999999997 2 2599999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHh-HH-HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKN-LI-SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~-l~-~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
++|+++|||||+++++....+...+ .+ .....++.++. .+..++..++.+++++.++.+.|+|+|+.+++++|++
T Consensus 210 ~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGi---av~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~ 286 (521)
T PRK12483 210 VRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGV---AVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYD 286 (521)
T ss_pred hCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceecee---ccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999999999987644322111 00 00001122221 1222344567788899999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
++|+++||+ +|+++||++++.++...++++||+|+||||+|...+.+-..+-
T Consensus 287 ~~~i~vEpa-gAaalAal~~~~~~~~~~g~~VV~IlsGgNid~~~l~~i~~r~ 338 (521)
T PRK12483 287 DTRSITEPA-GALAVAGIKKYAEREGIEGQTLVAIDSGANVNFDRLRHVAERA 338 (521)
T ss_pred hCCcEEeHH-HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999997 7899999998764432258999999999999988876655443
No 23
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=374.31 Aligned_cols=298 Identities=16% Similarity=0.138 Sum_probs=234.9
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-h-cCCCeEEEeCCccchHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-D-HIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~-~g~~~VVt~Gas~GNhg~ 156 (460)
.+|||.+. +.|+ +.+ |++||+|+|||+ | +||||.|++.+.+.++. + +...+||++ |.||||+
T Consensus 24 ~~TPL~~s--~~Ls-~~~---------g~~v~lK~E~lQ-~-~gSFK~RGA~n~i~~Ls~e~~~~~gViaa--SaGNHaQ 87 (347)
T COG1171 24 NPTPLQRS--PSLS-ERL---------GAEIYLKRENLQ-P-VGSFKIRGAYNKLSSLSEEEERAAGVIAA--SAGNHAQ 87 (347)
T ss_pred cCCCcccc--hhhH-Hhh---------CceEEEeeccCc-c-cccchhhhHHHHHHhcChhhhhcCceEEe--cCCcHHH
Confidence 69999999 8888 443 789999999999 6 89999999999988864 3 456789985 6799999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
++|++|+++|++++||||..+|..+ +..++.||+ |++++. .|++..+. |++++
T Consensus 88 GvA~aa~~lGi~a~IvMP~~tp~~K---v~a~r~~GaeVil~g~-~~dda~~~----a~~~a------------------ 141 (347)
T COG1171 88 GVAYAAKRLGIKATIVMPETTPKIK---VDATRGYGAEVILHGD-NFDDAYAA----AEELA------------------ 141 (347)
T ss_pred HHHHHHHHhCCCEEEEecCCCcHHH---HHHHHhcCCEEEEECC-CHHHHHHH----HHHHH------------------
Confidence 9999999999999999999998654 445799998 999887 47654333 23332
Q ss_pred hhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~ 315 (460)
++.+-.|+.|++ +|..+.|+.|++.||.+|+. ..||+||||+|+||+++|++.+++
T Consensus 142 -------------------~~~G~~~i~pfD--~p~viAGQGTi~lEileq~~---~~~d~v~vpvGGGGLisGia~~~k 197 (347)
T COG1171 142 -------------------EEEGLTFVPPFD--DPDVIAGQGTIALEILEQLP---DLPDAVFVPVGGGGLISGIATALK 197 (347)
T ss_pred -------------------HHcCCEEeCCCC--CcceeecccHHHHHHHHhcc---ccCCEEEEecCccHHHHHHHHHHH
Confidence 222233444543 56666688889999999972 237999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhhHHHHHHh-HHH--HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 316 CLGLPWEVTAIALVDTIDGYKQQEKN-LIS--EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 316 ~~g~~~~vigVe~~g~~~~~~~~~~~-l~~--~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
.+.|.++||||||+++++++.+...+ ... .-..+|.++. .+..+++.+|.+++++.++.+.|+|+|+.++|+++
T Consensus 198 ~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~---av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l 274 (347)
T COG1171 198 ALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGL---AVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDL 274 (347)
T ss_pred HhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCcccccc---ccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHH
Confidence 99999999999999998876655433 110 0012233322 33456678999999999999999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHH
Q 012606 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
++++++.+||+ ++.++|++++...+. .++++|++|+||||.|...+.+-..+.
T Consensus 275 ~~~~~iI~Epa-GAlalAal~~~~~~~-~~g~~v~~ilSGgN~d~~~~~~v~~~~ 327 (347)
T COG1171 275 FERTKIIAEPA-GALALAALLAGKIEP-LQGKTVVVILSGGNIDFERLAEVLERA 327 (347)
T ss_pred HhcCCeecccc-HHHHHHHHHhhhhhh-cCCCeEEEEecCCCCCHHHHHHHHhcc
Confidence 99999999997 688999998876543 467889999999999988766555443
No 24
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=4.9e-46 Score=376.44 Aligned_cols=291 Identities=16% Similarity=0.107 Sum_probs=220.8
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++++ +.. |++||+|+|++| | +||||+|.+.+++.++. +.+.++||++ |+||||+|
T Consensus 23 ~~TPl~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 86 (321)
T PRK07048 23 HRTPVLTS--RTAD-ART---------GAQVFFKCENFQ-R-MGAFKFRGAYNALSQFSPEQRRAGVVTF--SSGNHAQA 86 (321)
T ss_pred CCCCCccc--hhhH-Hhc---------CCeEEEEeccCC-C-CCCeeHHHHHHHHHhhhHhhcCCcEEEe--CCCHHHHH
Confidence 89999999 8887 433 679999999999 7 89999999999998876 4466788885 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+.+|++|+||||+..++ .+..+++.||| |+.++.. +++..+. +++
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~---~k~~~~~~~GAeV~~~~~~-~~~~~~~----a~~--------------------- 137 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPA---AKVAATRGYGGEVVTYDRY-TEDREEI----GRR--------------------- 137 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHH---------------------
Confidence 9999999999999999998764 35567899998 9999853 4432221 111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++++.+..|+.| ..||....|+.+++.||++|+ +.||+||+|+|||||++|+++++++
T Consensus 138 ----------------l~~~~g~~~~~~--~~~~~~~~g~~t~~~EI~~q~----~~~D~vv~~vGtGG~~~Gi~~~~k~ 195 (321)
T PRK07048 138 ----------------LAEERGLTLIPP--YDHPHVIAGQGTAAKELFEEV----GPLDALFVCLGGGGLLSGCALAARA 195 (321)
T ss_pred ----------------HHHhcCCEEECC--CCCcchhhccchHHHHHHhhc----CCCCEEEEecChhHHHHHHHHHHHH
Confidence 112222333333 346666788999999999996 3699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHHH--HHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLISE--FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~~--~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
+++.++|||||+++++....+...+.... ...+++++. ..+.++...+..++++.++.+.|+|+|+++++++|++
T Consensus 196 ~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~---~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 272 (321)
T PRK07048 196 LSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGA---QTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAE 272 (321)
T ss_pred hCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCccccc---ccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHH
Confidence 99999999999998765433321110000 001122111 1112223456667889999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ 442 (460)
++||++||+ +++++++++++.+. .++++||+|+||||.+++.+.+
T Consensus 273 ~~gi~~eps-~a~~laa~~~~~~~--~~~~~vv~i~tGGn~~~~~~~~ 317 (321)
T PRK07048 273 RMKIVVEPT-GCLGAAAALRGKVP--LKGKRVGVIISGGNVDLARFAA 317 (321)
T ss_pred hCCceeccH-HHHHHHHHHhCchh--cCCCeEEEEeCCCCCCHHHHHH
Confidence 999999997 67999999886543 3578999999999999877544
No 25
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.4e-45 Score=391.71 Aligned_cols=298 Identities=16% Similarity=0.119 Sum_probs=231.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHH-HhcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a-~~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |.+||+||||+| | +||||+|.+.+++..+ .+++.++||++ |+||||++
T Consensus 16 ~~TPL~~~--~~Ls-~~~---------g~~i~lK~E~lq-p-tgSfK~RgA~n~i~~l~~~~~~~gVV~a--SaGNha~~ 79 (499)
T TIGR01124 16 QETPLQKA--AKLS-ERL---------GNRILIKREDLQ-P-VFSFKLRGAYNKMAQLSPEQKARGVIAA--SAGNHAQG 79 (499)
T ss_pred CCCCeeeh--HHHH-HHh---------CCEEEEEecCCC-C-CCCCHHHHHHHHHHHhhHHhcCCEEEEE--CCCHHHHH
Confidence 89999999 8888 443 679999999998 7 8999999999998876 55667889985 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||..+|.. +...++.||| |++++. .|++..+ .|+++
T Consensus 80 vA~aa~~~Gi~~~IvmP~~tp~~---Kv~~~r~~GA~Vvl~g~-~~d~a~~----~a~~l-------------------- 131 (499)
T TIGR01124 80 VAFSAARLGLKALIVMPETTPDI---KVDAVRGFGGEVVLHGA-NFDDAKA----KAIEL-------------------- 131 (499)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEeCc-CHHHHHH----HHHHH--------------------
Confidence 99999999999999999988753 4557899998 999875 4553221 12222
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+++.+..|+.|. .||....|+.|+|.||++|+ + ..||+||+|+|||||++|++.++++
T Consensus 132 -----------------a~~~g~~~i~p~--~~~~~i~G~gtig~EI~~q~--~-~~~D~vvvpvGgGGliaGia~~lk~ 189 (499)
T TIGR01124 132 -----------------SQEKGLTFIHPF--DDPLVIAGQGTLALEILRQV--A-NPLDAVFVPVGGGGLAAGVAALIKQ 189 (499)
T ss_pred -----------------HHhcCCEeeCCC--CChHHHHhhHHHHHHHHHhC--C-CCCCEEEEccCccHHHHHHHHHHHH
Confidence 222334454443 46888889999999999996 2 2699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH---HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL---ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l---~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
.+|+++|||||+++++....+...+. .+. ..++.++ ..+..++..++.++++++++++.|+|+|+.+|+++|+
T Consensus 190 ~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~-~~t~adg---iav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~ 265 (499)
T TIGR01124 190 LMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQ-VGLFADG---VAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLF 265 (499)
T ss_pred hCCCCEEEEEEECCChHHHHHHhcCCceeCCC-CCCccCc---ccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 99999999999999876443321110 000 0111221 1223344567888899999999999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHH
Q 012606 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
+++|+++||+ +|+++||++++.++...++++||+|+||||.+...+..-..+-
T Consensus 266 ~~~gii~Epa-gA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~~~~l~~~~~r~ 318 (499)
T TIGR01124 266 EDTRAVAEPA-GALALAGLKKYVALHGIRGQTLVAILSGANMNFHRLRYVSERC 318 (499)
T ss_pred HhcCcEEech-HHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999997 8899999998875432258899999999999988876655443
No 26
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=7.4e-46 Score=375.30 Aligned_cols=286 Identities=12% Similarity=0.036 Sum_probs=217.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCe-EEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD-LVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~-VVt~Gas~GNhg~A 157 (460)
++|||+++ ++++ +.+ |.+||+|+|++| | +||||+|++.++|..+.+.+.++ ||++ |+||||+|
T Consensus 18 ~~TPl~~~--~~l~-~~~---------g~~l~~K~E~~n-p-tGS~K~R~a~~~i~~a~~~~~~~gvv~a--SsGN~g~a 81 (322)
T PRK07476 18 RRTPLVAS--ASLS-ARA---------GVPVWLKLETLQ-P-TGSFKLRGATNALLSLSAQERARGVVTA--STGNHGRA 81 (322)
T ss_pred CCCCceec--hhhH-Hhh---------CCeEEEEEccCC-C-CCCchHHHHHHHHHhhhhhhhCCeEEEE--CCChHHHH
Confidence 89999999 8887 443 679999999998 7 89999999999999998888765 8875 78999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||+..++. +..+++.||| |+.+++. +++..+. ++++
T Consensus 82 lA~~a~~~G~~~~i~vp~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~~-------------------- 133 (322)
T PRK07476 82 LAYAARALGIRATICMSRLVPAN---KVDAIRALGAEVRIVGRS-QDDAQAE----VERL-------------------- 133 (322)
T ss_pred HHHHHHHhCCCEEEEeCCCCCHH---HHHHHHHcCCEEEEECCC-HHHHHHH----HHHH--------------------
Confidence 99999999999999999988643 4567899998 9999863 5432221 1111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.++.+.+|+.| ..||...+|+.+++.||++|+ +.+|+||+|+||||+++|++.+|++
T Consensus 134 -----------------~~~~g~~~~~~--~~n~~~~~g~~t~~~Ei~~Q~----~~~d~iv~~vG~GG~~~Gv~~~~k~ 190 (322)
T PRK07476 134 -----------------VREEGLTMVPP--FDDPRIIAGQGTIGLEILEAL----PDVATVLVPLSGGGLASGVAAAVKA 190 (322)
T ss_pred -----------------HHhcCCEEeCC--CCCcceeechhHHHHHHHHhC----cCCCEEEEEcChHHHHHHHHHHHHH
Confidence 11122344433 347777889999999999996 3689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH------HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l------~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
++++++|||||+++++..+.+...+. ...+++.++.+ ++ . .....+.+.+...++.+.|+|+|++++++
T Consensus 191 ~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~-~~--~--~~~~~~~~~~~~~d~~~~V~d~e~~~a~~ 265 (322)
T PRK07476 191 IRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGG-IG--L--DNRYTFAMCRALLDDVVLLDEAEIAAGIR 265 (322)
T ss_pred hCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccc-cc--C--CcHHHHHHHHhcCCeEEEECHHHHHHHHH
Confidence 99999999999998765443221110 01111111101 01 0 01223456667888999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCC-CCeEEEEecCCCcchhhH
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQ-DADVVMLHTGGTLGMFGL 440 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~-g~~Vv~i~TGG~~~~~~~ 440 (460)
+|++++||++||+ +++++|++++. .+.. +++||+|+||||.+...+
T Consensus 266 ~l~~~~gi~ve~a-~a~~laal~~~---~~~~~~~~Vvvi~tGg~~~~~~~ 312 (322)
T PRK07476 266 HAYREERLVVEGA-GAVGIAALLAG---KIAARDGPIVVVVSGANIDMELH 312 (322)
T ss_pred HHHHhcCceEeCh-hHHHHHHHHhC---CcccCCCcEEEEECCCCCCHHHH
Confidence 9999999999996 78889988742 2223 489999999999997654
No 27
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.1e-45 Score=381.89 Aligned_cols=327 Identities=17% Similarity=0.131 Sum_probs=238.6
Q ss_pred CceeEeeecHHHHHHHHhhhhhhhcCCCcchhhhhccccc------cccCCCCCcccccCCCCCcccCCcccccCCCc-e
Q 012606 36 QGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTT------EKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-C 108 (460)
Q Consensus 36 ~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~-~ 108 (460)
-|++++.|+.+.+... + ....+|++..++|- ...|+|||+++ ++|+ +.+ |. +
T Consensus 26 g~~l~~~y~~~~~~~~--~-------~~~~~wry~~~lp~~~~~v~l~~G~TPLv~~--~~l~-~~~---------g~~~ 84 (397)
T PRK06260 26 GGLLEVIYDLDKIFDK--L-------RGRGVWRYKELLPVKKKIVSLNEGGTPLYRC--PNLE-KEL---------GVKE 84 (397)
T ss_pred CCeEEEEecchhhhhc--c-------CCcceeeehhhcCCCCCcccCCCCCCCeEEc--hhhH-HHh---------CCCc
Confidence 4889999997754321 1 11233333333221 24589999999 8887 443 44 8
Q ss_pred EEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHH
Q 012606 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLI 187 (460)
Q Consensus 109 l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~ 187 (460)
||+|+|++| | +||||||++.+++..|++.|.++||+ +|+||||+|+|++|+++|++|+||||.. .+. .+..+
T Consensus 85 l~~K~E~~n-P-TGSfKdRga~~~v~~a~~~g~~~vv~--aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~---~k~~~ 157 (397)
T PRK06260 85 LYVKHEGAN-P-TGSFKDRGMTVGVTKALELGVKTVAC--ASTGNTSASLAAYAARAGLKCYVLLPAGKVAL---GKLAQ 157 (397)
T ss_pred EEEEeCCCC-C-CcCcHHHHHHHHHHHHHHcCCCEEEE--eCCcHHHHHHHHHHHHcCCcEEEEEeCCCccH---HHHHH
Confidence 999999999 7 89999999999999999999999997 4789999999999999999999999986 433 35557
Q ss_pred HHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC
Q 012606 188 STIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG 266 (460)
Q Consensus 188 ~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g 266 (460)
++.||| |+.|+.+ |++..+.. ++ +.+. ..+|+++.
T Consensus 158 ~~~~GA~vi~v~~~-~~~~~~~a----~~-------------------------------------~~~~-~g~y~~~~- 193 (397)
T PRK06260 158 ALLHGAKVLEVDGN-FDDALDMV----VE-------------------------------------LAKE-GKIYLLNS- 193 (397)
T ss_pred HHhcCCEEEEECCc-HHHHHHHH----HH-------------------------------------HHhh-CCEEeecC-
Confidence 899998 9999864 55432221 11 1111 23565542
Q ss_pred CcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcC------CCCeEEEEeccCChhhHHHHHH
Q 012606 267 AGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG------LPWEVTAIALVDTIDGYKQQEK 340 (460)
Q Consensus 267 ~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g------~~~~vigVe~~g~~~~~~~~~~ 340 (460)
.||...+|++|+++||++|+ ++..||+||+|+|+||+++|++++|+++. ..+||||||++++.+.......
T Consensus 194 -~np~~~~G~~t~a~Ei~eQl--~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~ 270 (397)
T PRK06260 194 -INPFRLEGQKTIGFEIADQL--GWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKK 270 (397)
T ss_pred -CCchhhcchhhHHHHHHHHh--CCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHc
Confidence 48999999999999999997 43369999999999999999999999764 3479999999997654332211
Q ss_pred hH--HHH--HHHHhcccc-ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHH
Q 012606 341 NL--ISE--FKRLFGFLL-KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLL 415 (460)
Q Consensus 341 ~l--~~~--~~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~ 415 (460)
+. ... ...++..++ ++.+ ......+.+++++.+..+.|+|+|+++++++|++++||++||+ +|+++||++++
T Consensus 271 g~~~~~~~~~~~tia~~i~i~~p--~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~veps-saaalAa~~~l 347 (397)
T PRK06260 271 GKDEIEPVENPETVATAIRIGNP--VNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPA-SAASVAGLIKL 347 (397)
T ss_pred CCCcccccCCCCceeeeeEeCCC--CCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCch-HHHHHHHHHHH
Confidence 10 000 001122111 1111 1112345567888888999999999999999999999999997 79999999988
Q ss_pred hhhc-CCCCCeEEEEecCCC-cchhhH
Q 012606 416 SDEK-LKQDADVVMLHTGGT-LGMFGL 440 (460)
Q Consensus 416 ~~~~-~~~g~~Vv~i~TGG~-~~~~~~ 440 (460)
.++. +.++++||+|+||++ ++....
T Consensus 348 ~~~g~i~~~~~VV~i~tG~glK~~~~~ 374 (397)
T PRK06260 348 VEEGVIDKDERVVCITTGHLLKDPDAA 374 (397)
T ss_pred HHcCCCCCCCeEEEEeCCCccCchHHH
Confidence 7653 567899999999966 475443
No 28
>PLN02970 serine racemase
Probab=100.00 E-value=2.9e-45 Score=371.81 Aligned_cols=294 Identities=15% Similarity=0.100 Sum_probs=220.1
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++++ +.+ |.+||+|+|++| | +||||||.+.+++..+. +.+.++||++ |+||||+|
T Consensus 26 ~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGSfKdRga~~~i~~~~~~~~~~~vv~a--SsGN~g~a 89 (328)
T PLN02970 26 HRTPVLTS--SSLD-ALA---------GRSLFFKCECFQ-K-GGAFKFRGACNAIFSLSDDQAEKGVVTH--SSGNHAAA 89 (328)
T ss_pred CCCCeeec--hhhH-Hhh---------CCeEEEEecCCC-C-CCCcHHHHHHHHHHHhhHhhcCCeEEEE--CCcHHHHH
Confidence 89999999 8887 433 679999999999 7 89999999999998875 4556789874 68999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+.+|++|+||||+..++.+ ..+++.||| |+.++.. ++.+.+. |+++
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k---~~~~~~~GA~Vi~~~~~-~~~~~~~----a~~l-------------------- 141 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACK---VDAVIRYGGIITWCEPT-VESREAV----AARV-------------------- 141 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHH---HHHHHhcCCEEEEeCCC-HHHHHHH----HHHH--------------------
Confidence 999999999999999999876543 346899998 9999863 4432221 1221
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++. ++.|++ .+..||...+|+.++++||++|+ +.||+||+|+|||||++|++++|++
T Consensus 142 -----------------a~~-~g~~~~-~~~~n~~~~~g~~t~g~Ei~~ql----~~~D~vv~~vG~GG~~~Gi~~~lk~ 198 (328)
T PLN02970 142 -----------------QQE-TGAVLI-HPYNDGRVISGQGTIALEFLEQV----PELDVIIVPISGGGLISGIALAAKA 198 (328)
T ss_pred -----------------HHh-cCCEEe-CCCCCcchhhehHHHHHHHHHhc----cCCCEEEEeeCchHHHHHHHHHHHh
Confidence 111 223433 33456777889999999999997 2599999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHH-H-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLI-S-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~-~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
.++.++|||||+++++....+...+.. . .-..++..++ ... ++...+.+.++..++.+.|+|+|+++++++|++
T Consensus 199 ~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl---~~~-~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~ 274 (328)
T PLN02970 199 IKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGL---RAS-LGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYE 274 (328)
T ss_pred cCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccc---cCC-cCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHH
Confidence 999999999999998754432211100 0 0001112111 000 122345667788899999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhh-c-CCC-CCeEEEEecCCCcchhhHHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDE-K-LKQ-DADVVMLHTGGTLGMFGLAQRY 444 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~-~-~~~-g~~Vv~i~TGG~~~~~~~~~ry 444 (460)
++|+++||+ +|++++++++.... . +.+ +++||+|+||||.++..+.+-+
T Consensus 275 ~~gi~ve~s-~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~~~~~~~~~~ 326 (328)
T PLN02970 275 RLKVVVEPS-GAIGLAAALSDSFRSNPAWKGCKNVGIVLSGGNVDLGVLWESF 326 (328)
T ss_pred hcCcEEeHH-HHHHHHHHHhCcccccccccCCCeEEEEECCCCCCHHHHHHHh
Confidence 999999996 78999997754322 1 223 4799999999999977765543
No 29
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=2.7e-45 Score=381.94 Aligned_cols=297 Identities=12% Similarity=0.072 Sum_probs=222.8
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC-CCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g-~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ ..+ |++||+|+|++| | +||||+|++.+++..+.+.+ .++||++ |+||||+|
T Consensus 24 ~~TPl~~~--~~ls-~~~---------g~~v~~K~E~~n-p-tGSfK~Rga~~~i~~~~~~~~~~gvv~a--SsGN~g~a 87 (406)
T PRK06382 24 NRTPLIHS--TTFG-DEY---------GGDIYFKLENFQ-K-TGSFKSRGAVFKFSKLSEDELRNGVITA--SAGNHAQG 87 (406)
T ss_pred CCCCeeEh--hhhH-HHh---------CCEEEEEecCCC-C-CCCCHHHHHHHHHHhcchhccCCeEEEE--CCCHHHHH
Confidence 89999999 8887 443 679999999998 7 89999999999998776544 3578885 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||...|.. +..+++.||| |+.++. .|++..+. |+++
T Consensus 88 ~A~aa~~~G~~~~ivmp~~~~~~---k~~~~~~~GA~Vv~~~~-~~~~a~~~----a~~l-------------------- 139 (406)
T PRK06382 88 VAYAASINGIDAKIVMPEYTIPQ---KVNAVEAYGAHVILTGR-DYDEAHRY----ADKI-------------------- 139 (406)
T ss_pred HHHHHHHcCCCEEEEEcCCCHHH---HHHHHHHcCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988653 3446799998 998876 35543222 2221
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+...+.+|+.| ..||....|+.+++.||++|+ +.||+||+|+||||+++|+++++++
T Consensus 140 -----------------a~~~~~~~v~~--~~~~~~i~g~~t~~~Ei~eq~----~~~d~vvvpvG~GG~~~Gv~~~~k~ 196 (406)
T PRK06382 140 -----------------AMDENRTFIEA--FNDRWVISGQGTIGLEIMEDL----PDLDQIIVPVGGGGLISGIALAAKH 196 (406)
T ss_pred -----------------HHhcCCEecCc--cCChHHHHHHHHHHHHHHHhc----CCCCEEEEeeChHHHHHHHHHHHHH
Confidence 12222334333 347888889999999999996 3699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH-HH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l-~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
.+|.++|||||+++++....+...+. .. ....++.++. ....++...+.+.+++.++.+.|+|+|+++++++|++
T Consensus 197 ~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl---~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~ 273 (406)
T PRK06382 197 INPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGI---SVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFE 273 (406)
T ss_pred hCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccc---cCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHH
Confidence 99999999999999876433221111 00 0001121111 1111223456678899999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHHh
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSF 448 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~~ 448 (460)
++||++||+ +|+++|+++... ...++++||+|+||||.|+..+..-+.+.+
T Consensus 274 ~~gi~~eps-ga~~laal~~~~--~~~~~~~Vv~i~sGGn~d~~~~~~~~~~~~ 324 (406)
T PRK06382 274 REKIVAEPS-GAVGLAAIMEGK--VDVKGKKVAIVVSGGNINPLLMSKIIYKEL 324 (406)
T ss_pred HcCceechH-HHHHHHHHHhcc--ccCCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999996 677788775432 123578999999999999887776665543
No 30
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=9.9e-45 Score=366.23 Aligned_cols=286 Identities=12% Similarity=0.025 Sum_probs=217.7
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++++ ..+ |.+||+|+|++| | +||||+|++.+++..+. +.+.++||+. |+||||+|
T Consensus 18 ~~TPl~~~--~~l~-~~~---------g~~l~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 81 (317)
T TIGR02991 18 EETPLVES--PSLS-ELC---------GVPVHLKLEHRQ-T-TGSFKLRGATNAVLSLSDTQRAAGVVAA--STGNHGRA 81 (317)
T ss_pred CCCCceec--hhhH-Hhh---------CCeEEEEeccCC-C-CCCcHHHHHHHHHHhhhHhccCCeEEEE--CCCHHHHH
Confidence 89999999 8887 433 679999999998 7 89999999999998764 4566788874 78999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||...++ .+..+++.||| |+.++. .+++..+.. +++
T Consensus 82 lA~~a~~~G~~~~v~~p~~~~~---~k~~~~~~~GA~V~~~~~-~~~~~~~~a----~~~-------------------- 133 (317)
T TIGR02991 82 LAYAAAEEGVRATICMSELVPQ---NKVDEIRRLGAEVRIVGR-SQDDAQEEV----ERL-------------------- 133 (317)
T ss_pred HHHHHHHhCCCEEEEcCCCCCH---HHHHHHHHcCCEEEEeCC-CHHHHHHHH----HHH--------------------
Confidence 9999999999999999998764 34567899998 999986 355432221 111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.+.. +.|++ .+..||...+|+.+++.||++|+ +.+|+||+|+|+|||++|++++|++
T Consensus 134 -----------------~~~~-g~~~~-~~~~n~~~~~g~~t~a~Ei~~q~----~~~d~vvv~~G~Gg~~~Gi~~~~k~ 190 (317)
T TIGR02991 134 -----------------VADR-GLTML-PPFDHPDIVAGQGTLGLEVVEQM----PDLATVLVPLSGGGLASGVAMAVKA 190 (317)
T ss_pred -----------------HHhc-CCEee-CCCCChHHHhhHHHHHHHHHHhC----CCCCEEEEEcChhHHHHHHHHHHHH
Confidence 1111 22333 34457888899999999999996 3579999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH------HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l------~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
++|.++|||||+++++..+.+...+. ...+++.++.+. + . .+...+.+.++..++.+.|+|+|++++++
T Consensus 191 ~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~-~--~--~~~~~~~~~~~~vd~~v~V~d~e~~~a~~ 265 (317)
T TIGR02991 191 ARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGI-G--L--DNRVTFAMCKALLDEIVLVSEAEIAAGIR 265 (317)
T ss_pred hCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhcc-C--C--CCHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 99999999999998765443321110 011222221111 1 0 11234566778899999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhH
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~ 440 (460)
+|++++|+++||+ +++++|++++. .+..+++||+|+||||.+...+
T Consensus 266 ~l~~~~g~~ve~s-~a~~~Aal~~~---~~~~~~~vvvvltG~n~~~~~~ 311 (317)
T TIGR02991 266 HAYAEEREIVEGA-GAVGIAALLAG---KIKNPGPCAVIVSGRNIDMDLH 311 (317)
T ss_pred HHHHhCCcEEcch-HHHHHHHHHcC---ccccCCcEEEEeCCCCCCHHHH
Confidence 9999999999996 78889988742 2334789999999999997654
No 31
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.2e-45 Score=375.76 Aligned_cols=291 Identities=14% Similarity=0.117 Sum_probs=218.1
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..|+|||+++ ++|+ +.+ |.+||+|+|++| | +||||||++.+++.+|+++|.++||++ |+||||+
T Consensus 25 ~~G~TPL~~~--~~l~-~~~---------g~~l~~K~E~~n-p-tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~ 88 (351)
T PRK06352 25 AEGNTPLIPL--PNLS-KEL---------GVTLYGKYEGLN-P-TGSFKDRGMVMAVAKAKEEGAEAVICA--STGNTSA 88 (351)
T ss_pred CCCCCCeeEc--HhhH-HHh---------CCeEEEEecCCC-C-ccChHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHH
Confidence 4599999999 8887 433 579999999999 7 899999999999999999999999985 7899999
Q ss_pred HHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
|+|++|+.+|++|+||||+.. +. .+..++++||| |+.++.. |++..+. +++++
T Consensus 89 AlA~~aa~~G~~~~ivvp~~~~~~---~k~~~~~a~GA~V~~~~~~-~~~~~~~----a~~~~----------------- 143 (351)
T PRK06352 89 AAAAYATRAGLKAYIVIPEGKVAL---GKLAQAVMYGADIISIQGN-FDEALKS----VRELA----------------- 143 (351)
T ss_pred HHHHHHHHcCCcEEEEEeCCCCcH---HHHHHHHhcCCEEEEECCC-HHHHHHH----HHHHH-----------------
Confidence 999999999999999999863 43 34557899998 9999863 5543222 12211
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
+.. ..+++ +..||...+||.++++||++|+ + ..||+||+|+|||||++|++++|
T Consensus 144 --------------------~~~-~~~~~--~~~n~~~~~G~~t~~~EI~~Q~--~-~~~D~vvv~vG~GG~~~Gi~~~l 197 (351)
T PRK06352 144 --------------------ETE-AVTLV--NSVNPYRLEGQKTAAFEICEQL--G-SAPDVLAIPVGNAGNISAYWKGF 197 (351)
T ss_pred --------------------Hhc-Ccccc--cCCCccceeeHHHHHHHHHHHc--C-CCCCEEEEECCchHHHHHHHHHH
Confidence 111 12222 2357888899999999999997 3 36999999999999999999999
Q ss_pred HhcCCC-----CeEEEEeccCChhhHHHHHHhHHHHHHHHhcccc-ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 315 ICLGLP-----WEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLL-KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 315 ~~~g~~-----~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
+++.+. ++|||||+++++........... +++..++ ++... ........++++.+..+.|+|+|++++
T Consensus 198 k~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~----~~ia~~l~~~~~~--~~~~~~~~~d~~~g~~~~V~d~e~~~a 271 (351)
T PRK06352 198 KEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNP----ETIATAIRIGNPA--SWGLAEAARDESGGYIHSVTDDEIVNA 271 (351)
T ss_pred HHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCC----CcceeEEEeCCCC--cHHHHHHHHHHhCCEEEEECHHHHHHH
Confidence 987665 89999999987542221110011 1122111 11000 000111234555666899999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecC-CCcchhhHH
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTG-GTLGMFGLA 441 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TG-G~~~~~~~~ 441 (460)
+++|++++||++||+ +|+++|++++++++ .+.++++||+|+|| |+.++....
T Consensus 272 ~r~la~~eGi~veps-saaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~~ 325 (351)
T PRK06352 272 YKKIAAQDGVFIEPG-SAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAM 325 (351)
T ss_pred HHHHHhhcCceEchh-HHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHHH
Confidence 999999999999997 89999999988753 34568899999999 888876543
No 32
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2.6e-45 Score=374.79 Aligned_cols=307 Identities=15% Similarity=0.087 Sum_probs=227.1
Q ss_pred CceeEeeecHHHHHHHHhhhhhhhcCCCcchhhhhcccc-------ccccCCCCCcccccCCCCCcccCCcccccCCCce
Q 012606 36 QGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTT-------TEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC 108 (460)
Q Consensus 36 ~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~ 108 (460)
.|++++.|+++.+... .+ ...+|++..++| ..-+|.|||+++ +.+
T Consensus 22 ~~~l~~~~~~~~~~~~-~~--------~~~~wry~~~lP~~~~~~~sl~eg~Tpl~~~-------------------~~~ 73 (347)
T PRK08329 22 GGTLLVEREYGSFDSP-RE--------YLDMRRYIDYLPVDEEFLPHLTPPITPTVKR-------------------SIK 73 (347)
T ss_pred CCcEEEEecccccccc-cc--------ccchhhhHHhCCCCCCCCCcCCCCCCccccC-------------------CCe
Confidence 5788999887643211 11 012333332222 224589999887 458
Q ss_pred EEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHH
Q 012606 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIS 188 (460)
Q Consensus 109 l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~ 188 (460)
||+|+|++| | +||||||++.+++..|++.|.++||++ |+||||+|+|++|+++|++|+||||+..+. .+..++
T Consensus 74 l~~K~E~~n-P-tGSfKdRga~~~i~~a~~~g~~~vv~a--SsGN~g~alA~~aa~~G~~~~v~vp~~~~~---~k~~~~ 146 (347)
T PRK08329 74 VYFKLDYLQ-P-TGSFKDRGTYVTVAKLKEEGINEVVID--SSGNAALSLALYSLSEGIKVHVFVSYNASK---EKISLL 146 (347)
T ss_pred EEEEeCCCC-C-CcCCHHHHHHHHHHHHHHcCCCEEEEE--CCCcHHHHHHHHHHHcCCcEEEEECCCChH---HHHHHH
Confidence 999999998 7 899999999999999999999999985 689999999999999999999999987753 466788
Q ss_pred HhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCC
Q 012606 189 TIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGA 267 (460)
Q Consensus 189 ~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~ 267 (460)
+.||| |+.|++. +++ +.+ .|+++ +++...+|+. +.
T Consensus 147 ~~~GA~v~~v~~~-~~~---~~~-~a~~l-------------------------------------~~~~~~~~~~--~~ 182 (347)
T PRK08329 147 SRLGAELHFVEGD-RME---VHE-EAVKF-------------------------------------SKRNNIPYVS--HW 182 (347)
T ss_pred HHcCCEEEEECCC-HHH---HHH-HHHHH-------------------------------------HHhcCCeecc--CC
Confidence 99998 9999863 443 211 11111 1222223433 34
Q ss_pred cchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcC------CCCeEEEEeccCChhhHHHHHHh
Q 012606 268 GDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG------LPWEVTAIALVDTIDGYKQQEKN 341 (460)
Q Consensus 268 ~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g------~~~~vigVe~~g~~~~~~~~~~~ 341 (460)
.||...+|++|+++||++|+ + .||+||+|+|+||+++|++++|+++. +.++||+||++++........
T Consensus 183 ~np~~~eG~~t~~~Ei~eql--~--~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~-- 256 (347)
T PRK08329 183 LNPYFLEGTKTIAYEIYEQI--G--VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSK-- 256 (347)
T ss_pred CCchhhccchhHHHHHHHHc--C--CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccC--
Confidence 68999999999999999996 3 69999999999999999999999862 468999999998654332110
Q ss_pred HHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-C
Q 012606 342 LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-L 420 (460)
Q Consensus 342 l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~ 420 (460)
....+++.++. +.+.. ....+.+++++.+..+.|+|+|+++++++|++ +||++||+ +|+++|+++++.++. +
T Consensus 257 ~~~t~a~gi~i---~~~~~--~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~veps-sa~a~Aa~~~l~~~g~i 329 (347)
T PRK08329 257 SENKLADGIAI---PEPPR--KEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPT-SAVALAAYWKLLEEGLI 329 (347)
T ss_pred CCCceeeeEEe---CCCCC--HHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECcc-HHHHHHHHHHHHHhCCC
Confidence 00111122221 11110 12345678888999999999999999999985 89999997 899999999988653 6
Q ss_pred CCCCeEEEEecCCC
Q 012606 421 KQDADVVMLHTGGT 434 (460)
Q Consensus 421 ~~g~~Vv~i~TGG~ 434 (460)
.++++||++|||++
T Consensus 330 ~~~~~Vv~~~TG~g 343 (347)
T PRK08329 330 EGGSKVLLPLSGSG 343 (347)
T ss_pred CCCCeEEEEeCCCC
Confidence 67899999999965
No 33
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-45 Score=367.81 Aligned_cols=288 Identities=15% Similarity=0.051 Sum_probs=220.2
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|.+.+++..+. +.+.++||+. |+||||+|
T Consensus 19 ~~TPLv~~--~~l~-~~~---------g~~i~~K~E~~n-p-tgS~KdR~a~~~~~~l~~~~~~~~vv~a--SsGN~g~a 82 (317)
T PRK06815 19 RVTPLEHS--PLLS-QHT---------GCEVYLKCEHLQ-H-TGSFKFRGASNKLRLLNEAQRQQGVITA--SSGNHGQG 82 (317)
T ss_pred CCCCcccc--HhHH-Hhh---------CCeEEEEecCCC-C-CCCcHHHHHHHHHHhcchhhcCceEEEE--CCChHHHH
Confidence 79999999 8887 433 679999999999 7 89999999998888653 2345678873 78999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||...++ .+..+++.||+ |+.++.. ++..... +++
T Consensus 83 lA~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~--------------------- 133 (317)
T PRK06815 83 VALAAKLAGIPVTVYAPEQASA---IKLDAIRALGAEVRLYGGD-ALNAELA----ARR--------------------- 133 (317)
T ss_pred HHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHH---------------------
Confidence 9999999999999999988753 35567899998 9999864 4432221 111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+++..+.+|+.|. .||....|+.++++||++|+ +.||+||+|+||||+++|++.+|++
T Consensus 134 ----------------~~~~~~~~~~~~~--~~~~~~~g~~t~a~Ei~~q~----~~~d~vv~~vG~Gg~~~Gi~~~~k~ 191 (317)
T PRK06815 134 ----------------AAEQQGKVYISPY--NDPQVIAGQGTIGMELVEQQ----PDLDAVFVAVGGGGLISGIATYLKT 191 (317)
T ss_pred ----------------HHHhcCCEEecCC--CChhhhcchhHHHHHHHHhc----CCCCEEEEECcHHHHHHHHHHHHHH
Confidence 1122223454443 46777789999999999996 2589999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHh-HH-----HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKN-LI-----SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~-l~-----~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
++++++|||||+++++..+.....+ +. ..+.+.++... . ++...+.+.+++.++.+.|+|+|++++++
T Consensus 192 ~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~---~---~~~~~~~~~~~~~~~~~~V~d~e~~~a~~ 265 (317)
T PRK06815 192 LSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGV---E---PGAITFPLCQQLIDQKVLVSEEEIKEAMR 265 (317)
T ss_pred hCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCC---c---ccHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 9999999999999987544332111 10 01222222111 0 11224556788899999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHH
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ 442 (460)
+|++++||++||+ +|+++++++++.++ .++++||+|+||||.+...+.+
T Consensus 266 ~la~~~gi~veps-sg~alaa~~~~~~~--~~~~~vv~i~tG~~~~~~~~~~ 314 (317)
T PRK06815 266 LIAETDRWLIEGA-AGVALAAALKLAPR--YQGKKVAVVLCGKNIVLEKYLE 314 (317)
T ss_pred HHHHhcCCeEecH-HHHHHHHHHhCchh--cCCCcEEEEECCCCCCHHHHHH
Confidence 9999999999997 89999999987654 3578999999999999776544
No 34
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=9e-45 Score=386.64 Aligned_cols=298 Identities=16% Similarity=0.126 Sum_probs=229.3
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |.+||+||||+| | +||||+|.+.+++..+. +++.++||++ |+||||+|
T Consensus 19 ~~TPL~~~--~~Ls-~~~---------g~~i~lK~E~lq-p-tgSfK~RgA~n~i~~l~~~~~~~gvV~a--SaGNha~a 82 (504)
T PRK09224 19 QETPLEKA--PKLS-ARL---------GNQVLLKREDLQ-P-VFSFKLRGAYNKMAQLTEEQLARGVITA--SAGNHAQG 82 (504)
T ss_pred CCCCceeh--hHhH-HHh---------CCEEEEEecCCC-C-CCCChHHHHHHHHHhhhHHhcCCEEEEE--CcCHHHHH
Confidence 89999999 8888 443 679999999998 7 89999999999988764 4567889986 57999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||..+|.. +...++.||| |++++. +|++..+. |+++
T Consensus 83 vA~aa~~lGi~~~IvmP~~tp~~---K~~~~r~~GA~Vi~~g~-~~~~a~~~----a~~l-------------------- 134 (504)
T PRK09224 83 VALSAARLGIKAVIVMPVTTPDI---KVDAVRAFGGEVVLHGD-SFDEAYAH----AIEL-------------------- 134 (504)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999987653 4456899998 999975 46542221 2221
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++..+..|+.|. .||....|+.|++.||++|+. ..||+||+||||||+++|++.+++.
T Consensus 135 -----------------~~~~g~~~v~~f--~~~~~i~G~gTi~~EI~~q~~---~~~D~vvvpvGgGGliaGia~~lk~ 192 (504)
T PRK09224 135 -----------------AEEEGLTFIHPF--DDPDVIAGQGTIAMEILQQHP---HPLDAVFVPVGGGGLIAGVAAYIKQ 192 (504)
T ss_pred -----------------HHhcCCEEeCCC--CCcHHHHhHHHHHHHHHHhcc---CCCCEEEEecChhHHHHHHHHHHHH
Confidence 122223444443 478888899999999999962 2499999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH---HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL---ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l---~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
++|+++|||||+++++....+...+. .+. ..++.++. .+..++..++.++++++++++.|+|+|+.+||++|+
T Consensus 193 ~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~-~~~~adg~---av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~ 268 (504)
T PRK09224 193 LRPEIKVIGVEPEDSACLKAALEAGERVDLPQ-VGLFADGV---AVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVF 268 (504)
T ss_pred hCCCCEEEEEEECCChHHHHHHhcCCCccCCC-CCcccCcc---cCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHH
Confidence 99999999999999876543321110 000 01111111 122233456778899999999999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHH
Q 012606 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
+++|+++||+ +|+++||++++.++...++++||+|+||||.+...+.+-..+-
T Consensus 269 ~~~~~~~epa-gA~~lAal~~~~~~~~~~g~~vv~i~sG~n~~~~~l~~~~~r~ 321 (504)
T PRK09224 269 EDTRSIAEPA-GALALAGLKKYVAQHGIEGETLVAILSGANMNFDRLRYVAERA 321 (504)
T ss_pred HhcCeEEcHH-HHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999997 8899999998875432248899999999999988776554433
No 35
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=7e-45 Score=378.84 Aligned_cols=296 Identities=15% Similarity=0.103 Sum_probs=221.0
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHH-HhcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a-~~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++..+ .+.+.++||++ |+||||++
T Consensus 15 ~~TPl~~~--~~ls-~~~---------g~~iy~K~E~~~-p-tGSfK~RgA~~~i~~l~~~~~~~gvv~a--SsGN~g~a 78 (409)
T TIGR02079 15 PHTPLQLN--ERLS-EKY---------GANIYLKREDLQ-P-VRSYKIRGAYNFLKQLSDAQLAKGVVCA--SAGNHAQG 78 (409)
T ss_pred CCCCcccc--HHHH-HHh---------CCEEEEEecCCC-C-CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHH
Confidence 89999999 8887 443 679999999999 7 8999999999999875 34455778885 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEe--CCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYV--PRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v--~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
+|++|+++|++|+||||+.+|.. +..+++.||| |+.| .+++|++..+. |.++
T Consensus 79 ~A~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~vv~v~~~g~~~~~a~~~----a~~~------------------ 133 (409)
T TIGR02079 79 FAYACRHLGVHGTVFMPATTPKQ---KIDRVKIFGGEFIEIILVGDTFDQCAAA----AREH------------------ 133 (409)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCCeeEEEEeCCCHHHHHHH----HHHH------------------
Confidence 99999999999999999988653 3457899998 5322 22345532211 1111
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
.++.+..| ++ ++.||....|+.++++||++|+. ..||+||+|+||||+++|++.+|
T Consensus 134 -------------------~~~~g~~~-~~-~~~~~~~~~g~~ti~~Ei~~q~~---~~~D~vv~pvG~GG~~~Gia~~~ 189 (409)
T TIGR02079 134 -------------------VEDHGGTF-IP-PFDDPRIIEGQGTVAAEILDQLP---EKPDYVVVPVGGGGLISGLTTYL 189 (409)
T ss_pred -------------------HHhcCCEE-eC-CCCCHhHhhhhHHHHHHHHHhcC---CCCCEEEEEecHhHHHHHHHHHH
Confidence 11122233 43 23578888899999999999972 25999999999999999999999
Q ss_pred HhcCCCCeEEEEeccCChhhHHHHHHhHHHH--HHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 315 ICLGLPWEVTAIALVDTIDGYKQQEKNLISE--FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 315 ~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~--~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
++++|+++|||||+++++....+...+.... ...++.++ .....++..++.+++.+.++.+.|+|+|+.+|+++|
T Consensus 190 k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g---~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l 266 (409)
T TIGR02079 190 AGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDG---AAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDL 266 (409)
T ss_pred HHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeecc---ccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHH
Confidence 9999999999999999876443321111000 00111111 112223334566778889999999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHH
Q 012606 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYK 445 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~ 445 (460)
++++|+++||+ +|+++||++++..+ .++++||+|+||||.|+..+.+-..
T Consensus 267 ~~~~gi~ve~a-gaa~lAa~~~~~~~--~~~~~Vv~ilsGgn~d~~~~~~~~~ 316 (409)
T TIGR02079 267 YNLEGIVAEPA-GALSIAALERLGEE--IKGKTVVCVVSGGNNDIERTEEIRE 316 (409)
T ss_pred HHhcCceecch-HHHHHHHHHhhhhh--cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999996 78999999876532 3589999999999999887655443
No 36
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1e-44 Score=368.21 Aligned_cols=296 Identities=14% Similarity=0.093 Sum_probs=219.3
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHh-cCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~-~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |++||+|+|++| | +||||||.+.+++..+.+ .+.++||++ |+||||+|
T Consensus 26 ~~TPlv~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~KdR~a~~~i~~~~~~~~~~~vv~~--SsGN~g~a 89 (333)
T PRK08638 26 RKTPLPRS--NYLS-ERC---------KGEIFLKLENMQ-R-TGSFKIRGAFNKLSSLTDAEKRKGVVAC--SAGNHAQG 89 (333)
T ss_pred cCCCceec--hhhH-Hhh---------CCeEEEEeccCC-c-cCCcHHHHHHHHHHhccHHhcCCeEEEe--CCcHHHHH
Confidence 89999999 8887 443 679999999999 7 899999999999987654 566788875 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+.+|++|+||||+..++. +..+++.||| |+.+++ .+++..+. ++++
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~~~~~----a~~~-------------------- 141 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKS---KVAATCGYGAEVVLHGD-NFNDTIAK----VEEI-------------------- 141 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHH---HHHHHHHcCCEEEEECc-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999987643 4567899998 998875 35432221 1111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++..+. |++ .+..||...+|+.++++||++|+ +.||+||+|+||||+++|++.+|++
T Consensus 142 -----------------a~~~g~-~~~-~~~~~~~~~~g~~t~a~Ei~~q~----~~~d~vv~~vG~Gg~~~Gv~~~lk~ 198 (333)
T PRK08638 142 -----------------VEEEGR-TFI-PPYDDPKVIAGQGTIGLEILEDL----WDVDTVIVPIGGGGLIAGIAVALKS 198 (333)
T ss_pred -----------------HHhcCC-EEc-CcCCCcchhccccHHHHHHHhhc----CCCCEEEEEeChhHHHHHHHHHHHH
Confidence 111222 333 33457888899999999999996 2589999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHH--HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLIS--EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~--~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
.+++++||||||++++....+...+... ....+++.+. ....+....+.+.+++.++.+.|+|+|+++++++|++
T Consensus 199 ~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl---~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~ 275 (333)
T PRK08638 199 INPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGC---DVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQ 275 (333)
T ss_pred hCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccc---cCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 9999999999999876544322111000 0001122211 1111112334456788999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYK 445 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~ 445 (460)
++|+++||+ +|+++|++.........++++||+|+||||.++..+.+...
T Consensus 276 ~~gi~~e~s-gA~~~Aa~~~~~~~~~~~~~~vv~v~~Ggn~~~~~~~~~~~ 325 (333)
T PRK08638 276 RNKVVTEGA-GALATAALLSGKLDQYIQNKKVVAIISGGNVDLSRVSQITG 325 (333)
T ss_pred HcCCeechh-HHHHHHHHHhCCcccccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 999999995 66777777643221223578999999999999888766443
No 37
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=9.4e-45 Score=363.73 Aligned_cols=285 Identities=13% Similarity=0.072 Sum_probs=217.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC-CCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g-~~~VVt~Gas~GNhg~A 157 (460)
|+|||+++ ++|+ +.+ |.+||+|+|++| | +||||||.+.+++.++++.+ .++||++ |+||||.|
T Consensus 16 g~TPl~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tgS~Kdr~a~~~l~~~~~~~~~~~iv~~--ssGN~g~a 79 (304)
T cd01562 16 RRTPLLTS--PTLS-ELL---------GAEVYLKCENLQ-K-TGSFKIRGAYNKLLSLSEEERAKGVVAA--SAGNHAQG 79 (304)
T ss_pred CCCCcccc--hhhH-HHh---------CCeEEEEeccCC-C-cCCcHHHhHHHHHHhcCHhhcCCcEEEE--CCCHHHHH
Confidence 89999999 8887 433 679999999999 7 89999999999999988776 5778885 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|++|||...+. .+..+++.||+ |+.+++. |+++.+. +++
T Consensus 80 lA~~a~~~G~~~~ivvp~~~~~---~k~~~l~~~Ga~vi~~~~~-~~~~~~~----a~~--------------------- 130 (304)
T cd01562 80 VAYAAKLLGIPATIVMPETAPA---AKVDATRAYGAEVVLYGED-FDEAEAK----ARE--------------------- 130 (304)
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEeCCC-HHHHHHH----HHH---------------------
Confidence 9999999999999999988754 34567899998 9999874 5543222 111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+.+..+.+|+ .+..||...+|+.+++.||++|+ + .||+||+|+|||||++|++++|++
T Consensus 131 ----------------la~~~~~~~~--~~~~n~~~~~g~~~~~~Ei~~q~--~--~~d~vv~~vGtGgt~~Gi~~~lk~ 188 (304)
T cd01562 131 ----------------LAEEEGLTFI--HPFDDPDVIAGQGTIGLEILEQV--P--DLDAVFVPVGGGGLIAGIATAVKA 188 (304)
T ss_pred ----------------HHHhcCCEEe--CCCCCcchhccHHHHHHHHHHhc--C--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 1222223333 33456777789999999999997 2 499999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHH--HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLI--SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~--~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
.++.++||||++.+++..+.....+.. ....+++..++ ....+....+.+.+++.+..|.|+|+|+++++++|++
T Consensus 189 ~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 265 (304)
T cd01562 189 LSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGL---AVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFE 265 (304)
T ss_pred hCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccc---cCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 999999999999887654322111100 00001111111 0001112234567788999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcc
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLG 436 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~ 436 (460)
++||++||+ +|+++++++++.++. ++++||+||||||.+
T Consensus 266 ~eGi~~~ps-s~~a~a~~~~~~~~~--~~~~vv~i~tGG~~~ 304 (304)
T cd01562 266 REKLVAEPA-GALALAALLSGKLDL--KGKKVVVVLSGGNID 304 (304)
T ss_pred HcCceEchh-HHHHHHHHHhCcccc--CCCeEEEEecCCCCC
Confidence 999999997 889999999886542 588999999999974
No 38
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-44 Score=376.12 Aligned_cols=291 Identities=13% Similarity=0.079 Sum_probs=223.1
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |++||+|+|++| | +||||+|.+.+++.++. +.+.++||++ |+||||++
T Consensus 21 ~~TPl~~~--~~ls-~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 84 (404)
T PRK08198 21 RRTPLEYS--RTLS-ELT---------GAEVYLKCENLQ-R-TGSFKIRGAYNKIASLSEEERARGVVAA--SAGNHAQG 84 (404)
T ss_pred CCCCceeh--hhHH-HHh---------CCEEEEEECCCC-C-CCCCHHHHHHHHHHhccHhhcCCEEEEE--CCCHHHHH
Confidence 89999999 8887 443 679999999999 7 89999999999998876 5566889985 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||+.+|.. +..+++.||| |+.++. .+++..+. |+++
T Consensus 85 lA~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~Vi~~~~-~~~~~~~~----a~~~-------------------- 136 (404)
T PRK08198 85 VAYAASLLGIKATIVMPETAPLS---KVKATRSYGAEVVLHGD-VYDEALAK----AQEL-------------------- 136 (404)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988653 4457899999 998875 45542221 1111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.+..+.+|+ .+..||....|+.|++.||++|+ +.+|+||+|+||||+++|++.+|++
T Consensus 137 -----------------~~~~g~~~~--~~~~~~~~~~g~~t~a~EI~~q~----~~~d~vv~~vG~GG~~~Gi~~~~k~ 193 (404)
T PRK08198 137 -----------------AEETGATFV--HPFDDPDVIAGQGTIGLEILEDL----PDVDTVVVPIGGGGLISGVATAVKA 193 (404)
T ss_pred -----------------HHhcCCEec--CCCCCccHHHHHHHHHHHHHHhC----CCCCEEEEEeCHhHHHHHHHHHHHH
Confidence 111222332 33457777889999999999996 3689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHH-H-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLI-S-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~-~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
..|+++|||||+++++....+...+.. . .-.+++++++ .+..++...+.+++++.++.+.|+|+|+++++++|++
T Consensus 194 ~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~---~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (404)
T PRK08198 194 LRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGI---AVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLE 270 (404)
T ss_pred hCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCcccccc---ccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 999999999999998764432211100 0 0001122211 1112233456678889999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ 442 (460)
++|+++||+ +|+++||++++. .+.++++||+|+||||.+...+..
T Consensus 271 ~~g~~~e~s-ga~~lAal~~~~--~~~~~~~vv~vl~ggn~~~~~l~~ 315 (404)
T PRK08198 271 RAKLVVEGA-GAVSVAALLSGK--LDVKGKKVVAVLSGGNIDVLLLSR 315 (404)
T ss_pred hcCeEEehH-HHHHHHHHHhch--hhcCCCeEEEEECCCCCCHHHHHH
Confidence 999999996 789999998764 234689999999999999776655
No 39
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-45 Score=358.31 Aligned_cols=283 Identities=16% Similarity=0.085 Sum_probs=223.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
|+|||+++ .+++ +.. +++||+|.|.+| | +||.|||.+.+|+.+|++.|. ++||. +|+||+
T Consensus 10 G~TPlvrL--~~~~-~~~---------~~~i~~KlE~~N-P-~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE--~TSGNT 73 (300)
T COG0031 10 GNTPLVRL--NRLS-PGT---------GVEIYAKLESFN-P-GGSVKDRIALYMIEDAEKRGLLKPGGTIVE--ATSGNT 73 (300)
T ss_pred CCCCcEee--cccC-CCC---------CceEEEEhhhcC-C-CCchhHHHHHHHHHHHHHcCCCCCCCEEEE--cCCChH
Confidence 89999999 8887 321 589999999998 7 789999999999999999985 67886 488999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|++||++|+.+|+++++|||+.++.++ ..++++||| |+.++.. .+. ..+.
T Consensus 74 GI~LA~vaa~~Gy~~iivmP~~~S~er---~~~l~a~GAevi~t~~~~g~~--~~a~----------------------- 125 (300)
T COG0031 74 GIALAMVAAAKGYRLIIVMPETMSQER---RKLLRALGAEVILTPGAPGNM--KGAI----------------------- 125 (300)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHH---HHHHHHcCCEEEEcCCCCCch--HHHH-----------------------
Confidence 999999999999999999999987653 346899998 9999872 211 1111
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHH-HHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+++.++++..++.++++.|..||.+. .||.+++.||++|+. ..+|+||+++|||||++|++
T Consensus 126 ---------------~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~---g~~d~fVagvGTGGTitGva 187 (300)
T COG0031 126 ---------------ERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTD---GKVDAFVAGVGTGGTITGVA 187 (300)
T ss_pred ---------------HHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhC---CCCCEEEEeCCcchhHHHHH
Confidence 11223344455656777787777653 367799999999973 35999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~ 391 (460)
+.+|+..|+++|++|||++++-......... .+.||.+++|. .+..+..|+.+.|+|+++++++|+
T Consensus 188 r~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~----i~GIG~~~ip~----------~~~~~~iD~v~~V~d~~A~~~~r~ 253 (300)
T COG0031 188 RYLKERNPNVRIVAVDPEGSVLLSGGEGPHK----IEGIGAGFVPE----------NLDLDLIDEVIRVSDEEAIATARR 253 (300)
T ss_pred HHHHhhCCCcEEEEECCCCCcccCCCCCCcc----cCCCCCCcCCc----------ccccccCceEEEECHHHHHHHHHH
Confidence 9999999999999999999764211000111 13345555442 234556788999999999999999
Q ss_pred HHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHH
Q 012606 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKS 446 (460)
Q Consensus 392 La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~ 446 (460)
|+++|||+++++ ||++++|+++++++ ..++++||+|+ ++..+||++
T Consensus 254 La~~eGilvG~S-sGA~~~aa~~~a~~-~~~g~~IVti~-------pD~G~RYls 299 (300)
T COG0031 254 LAREEGLLVGIS-SGAALAAALKLAKE-LPAGKTIVTIL-------PDSGERYLS 299 (300)
T ss_pred HHHHhCeeeccc-HHHHHHHHHHHHHh-cCCCCeEEEEE-------CCCcccccC
Confidence 999999999995 89999999998864 45689999998 677888876
No 40
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.4e-44 Score=373.70 Aligned_cols=288 Identities=14% Similarity=0.116 Sum_probs=218.5
Q ss_pred CCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC-CeEEEeCCccchHHHHHH
Q 012606 81 GPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-TDLVTCGGCQSAHATAVA 159 (460)
Q Consensus 81 TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~-~~VVt~Gas~GNhg~AlA 159 (460)
|||+++ ++|+ +.+ |++||+|+|++| | +||||+|.+.+++.++.+.+. ++||++ |+||||+|+|
T Consensus 1 TPl~~~--~~ls-~~~---------g~~i~~K~E~~~-p-tgS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA 64 (380)
T TIGR01127 1 TPLIYS--TTLS-DIT---------GSEVYLKLENLQ-K-TGSFKIRGALNKIANLSEDQRQRGVVAA--SAGNHAQGVA 64 (380)
T ss_pred CCceeh--HHHH-HHh---------CCeEEEEecCCC-C-CCCcHHHHHHHHHHhcchhccCCEEEEE--CCCHHHHHHH
Confidence 899999 8888 443 679999999999 7 899999999999999887775 678875 6699999999
Q ss_pred HHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhh
Q 012606 160 VSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (460)
Q Consensus 160 ~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~ 238 (460)
++|+++|++|+||||+..|.. +..+++.||| |++++. .+++..+ +|+++
T Consensus 65 ~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~a~~----~a~~~---------------------- 114 (380)
T TIGR01127 65 YAAKKFGIKAVIVMPESAPPS---KVKATKSYGAEVILHGD-DYDEAYA----FATSL---------------------- 114 (380)
T ss_pred HHHHHcCCCEEEEEcCCCcHH---HHHHHHHCCCEEEEECC-CHHHHHH----HHHHH----------------------
Confidence 999999999999999988643 4567899998 998875 3553222 12221
Q ss_pred hhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcC
Q 012606 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG 318 (460)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g 318 (460)
++..+. ++++ +..||....|+.+++.||++|+ +.||+||+|+||||+++|++.++++..
T Consensus 115 ---------------~~~~~~-~~~~-~~~~~~~~~g~~t~~~Ei~~q~----~~~D~vv~~vG~Gg~~aGi~~~~k~~~ 173 (380)
T TIGR01127 115 ---------------AEEEGR-VFVH-PFDDEFVMAGQGTIGLEIMEDI----PDVDTVIVPVGGGGLISGVASAAKQIN 173 (380)
T ss_pred ---------------HHhcCC-EecC-CCCChhhhhhhHHHHHHHHHhC----CCCCEEEEEeChHHHHHHHHHHHHHhC
Confidence 122222 3332 3446777889999999999996 369999999999999999999999999
Q ss_pred CCCeEEEEeccCChhhHHHHHHhH-HH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHh
Q 012606 319 LPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT 396 (460)
Q Consensus 319 ~~~~vigVe~~g~~~~~~~~~~~l-~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~e 396 (460)
|+++|||||+++++....+...+. .. ....+++++. ....++...+.+++++.++.+.|+|+|+.+|+++|++++
T Consensus 174 p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~---~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~ 250 (380)
T TIGR01127 174 PNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGI---AVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERH 250 (380)
T ss_pred CCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecch---hCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhc
Confidence 999999999999865432221110 00 0001112111 111122345667788999999999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHH
Q 012606 397 GILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (460)
Q Consensus 397 GI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~ 441 (460)
|+++||+ +|+++|++++... . .++++||+|+||||+|...+.
T Consensus 251 gi~~e~s-~a~~laa~~~~~~-~-~~~~~vv~i~sGGn~d~d~l~ 292 (380)
T TIGR01127 251 KILAEGA-GAAGVAALLEQKV-D-VKGKKIAVVLSGGNIDLNLLN 292 (380)
T ss_pred CeEechH-HHHHHHHHHhCcc-c-cCCCeEEEEeCCCCCCHHHHH
Confidence 9999996 6888999886432 1 357899999999999966543
No 41
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.4e-44 Score=362.29 Aligned_cols=277 Identities=17% Similarity=0.103 Sum_probs=212.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++..++++|. ++||+ +|+|||
T Consensus 6 g~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~--aSsGN~ 69 (299)
T TIGR01136 6 GNTPLVRL--NRLA-PGC---------DARVLAKLEGRN-P-SGSVKDRIALSMIEDAEKRGLLKPGDTIIE--ATSGNT 69 (299)
T ss_pred CCCceEEc--cccC-CCC---------CceEEEEEcccC-C-CCCccHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChH
Confidence 78999999 8887 432 579999999998 7 899999999999999999887 66876 478999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCc-hhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+++|++|+||||+..++ .+..+++.||| |+.++... ++++.+. |++
T Consensus 70 g~alA~~a~~~G~~~~i~vp~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~~----------------- 125 (299)
T TIGR01136 70 GIALAMVAAAKGYKLILTMPETMSL---ERRKLLRAYGAELILTPAEEGMKGAIDK----AEE----------------- 125 (299)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHH----HHH-----------------
Confidence 9999999999999999999998764 35567899998 99998641 2322111 111
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+.+.. +.|+++.+..||.. ..||.+++.||++|+ ++ .||+||+|+|+||+++|++
T Consensus 126 --------------------~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql--~~-~~d~iv~~vG~Gg~~~G~~ 181 (299)
T TIGR01136 126 --------------------LAAET-NKYVMLDQFENPANPEAHYKTTGPEIWRDT--DG-RIDHFVAGVGTGGTITGVG 181 (299)
T ss_pred --------------------HHhhC-CCeEecCCCCCchhHHHHHHHHHHHHHHhc--CC-CCCEEEEcCchhHHHHHHH
Confidence 12222 23556666666654 668999999999997 32 6999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~ 391 (460)
.+|++.++.++|||||+++++....+.. .. .. ...++.+.+ .+.+.....++.+.|+|+|+++++++
T Consensus 182 ~~~~~~~~~~~vi~Ve~~~~~~~~~~~~-~~-~~-~~~i~~~~~----------~~~~~~~~~d~~~~V~d~e~~~a~~~ 248 (299)
T TIGR01136 182 RYLKEQNPNIKIVAVEPAESPVLSGGEP-GP-HK-IQGIGAGFI----------PKILDLSLIDEVITVSDEDAIETARR 248 (299)
T ss_pred HHHHHhCCCCEEEEEecCCCccccCCCC-CC-cc-CCCCCCCCC----------CccCChhhCCEEEEECHHHHHHHHHH
Confidence 9999999999999999998765332210 00 00 011221111 11233455678999999999999999
Q ss_pred HHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 392 La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
|++++||++||+ +|+++++++++.++...++++||+|+||.
T Consensus 249 l~~~~gi~~e~s-saa~~a~~~~~~~~~~~~~~~vv~i~~d~ 289 (299)
T TIGR01136 249 LAREEGILVGIS-SGAAVAAALKLAKRLENADKVIVAILPDT 289 (299)
T ss_pred HHHHhCceEcch-HHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 999999999996 89999999998765334588999999983
No 42
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=4.1e-44 Score=364.44 Aligned_cols=293 Identities=13% Similarity=0.111 Sum_probs=222.2
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC--CeEEEeCCccchHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAHAT 156 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~--~~VVt~Gas~GNhg~ 156 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+++++|. ++||++ |+||||+
T Consensus 22 ~~TPl~~~--~~l~-~~~---------g~~l~~K~E~~n-p-tGS~K~R~a~~~v~~a~~~g~~~~~vv~~--SsGN~g~ 85 (338)
T PRK06608 22 HLTPIVHS--ESLN-EML---------GHEIFFKVESLQ-K-TGAFKVRGVLNHLLELKEQGKLPDKIVAY--STGNHGQ 85 (338)
T ss_pred cCCCccch--HhHH-HHh---------CCEEEEEeCCCC-C-CCCcHHHHHHHHHHHhhhhcCcCCeEEEE--CCCHHHH
Confidence 89999999 8887 443 679999999998 7 899999999999999999887 688874 7899999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
|+|++|+++|++|+||||...++. +..+++.||| |+.++. +++ ..+. ++
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~---k~~~l~~~GA~V~~~~~--~~~---~~~~-a~--------------------- 135 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKV---KQQAALYYGGEVILTNT--RQE---AEEK-AK--------------------- 135 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC--HHH---HHHH-HH---------------------
Confidence 999999999999999999987643 4567899998 999864 222 2111 11
Q ss_pred hhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~ 315 (460)
+ .. .++.|++|. ..||...+|+.+++.||++|+ ++ .||+||+|+|||||++|++.+++
T Consensus 136 ----------------~-~~-~~~~~~~~~-~~~~~~~~g~~t~a~Ei~~q~--~~-~~D~vv~~vG~GGt~~Gi~~~~k 193 (338)
T PRK06608 136 ----------------E-DE-EQGFYYIHP-SDSDSTIAGAGTLCYEALQQL--GF-SPDAIFASCGGGGLISGTYLAKE 193 (338)
T ss_pred ----------------H-HH-hCCCEEcCC-CCCHHHhccHHHHHHHHHHhc--CC-CcCEEEEeechhHHHHHHHHHHH
Confidence 1 11 124565554 457777889999999999996 32 69999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhhHHHHHHhHHHHH---HHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 316 CLGLPWEVTAIALVDTIDGYKQQEKNLISEF---KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 316 ~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~---~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
..++.++|||||++++++.+.+...+....+ ..++..++ ..+.+....+.+.+. .++.+.|+|+|+++++++|
T Consensus 194 ~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl---~~~~~~~~~~~~~~~-~d~~v~Vsd~e~~~a~~~l 269 (338)
T PRK06608 194 LISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGL---KTLSVSARTFEYLKK-LDDFYLVEEYEIYYWTAWL 269 (338)
T ss_pred hcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeeccc---CCCCCCHHHHHHHHh-CCCEEEECHHHHHHHHHHH
Confidence 9999999999999998654432111100000 01111111 111122334555554 5779999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHH
Q 012606 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYK 445 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~ 445 (460)
++++|+++||+ +|++++++++++++ ..++++||+|+||||.+...+.+-|.
T Consensus 270 ~~~~gi~veps-saa~laa~~~~~~~-~~~~~~Vv~v~tgg~~d~~~~~~~~~ 320 (338)
T PRK06608 270 THLLKVICEPS-SAINMVAVVNWLKT-QSKPQKLLVILSGGNIDPILYNELWK 320 (338)
T ss_pred HHHcCcEEchH-HHHHHHHHHhhchh-hcCCCeEEEEeCCCccCHHHHHHHHH
Confidence 99999999996 78999999987654 34688999999999998776555443
No 43
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2e-44 Score=376.86 Aligned_cols=298 Identities=14% Similarity=0.105 Sum_probs=221.9
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHH-HhcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a-~~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++++ +.+ |++||+|+|++| | +||||+|.+.+++.++ .+.+.++||++ |+||||+|
T Consensus 24 ~~TPl~~~--~~ls-~~~---------g~~l~~K~E~~~-p-tGSfK~RgA~~~i~~l~~~~~~~~Vv~a--SsGN~g~a 87 (420)
T PRK08639 24 PETPLQRN--DYLS-EKY---------GANVYLKREDLQ-P-VRSYKLRGAYNAISQLSDEELAAGVVCA--SAGNHAQG 87 (420)
T ss_pred cCCCccch--HHHH-HHh---------CCEEEEEecCCC-C-CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHH
Confidence 89999999 8887 443 679999999999 7 8999999999999875 33445788885 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeC--CCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVP--RTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~--~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
+|++|+++|++|+||||+..|.. +...++.||| |+.|. +..|++..+. |.++
T Consensus 88 lA~~a~~~G~~~~IvmP~~~~~~---k~~~~r~~GA~vv~v~~~g~~~~~a~~~----a~~~------------------ 142 (420)
T PRK08639 88 VAYACRHLGIPGVIFMPVTTPQQ---KIDQVRFFGGEFVEIVLVGDTFDDSAAA----AQEY------------------ 142 (420)
T ss_pred HHHHHHHcCCCEEEEECCCChHH---HHHHHHHcCCCeeEEEEeCcCHHHHHHH----HHHH------------------
Confidence 99999999999999999988653 3456899998 54432 2345432211 2221
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCC--CCEEEEecCCchhHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKR--AIKFVVDAGTGTTAVGLGL 312 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~--pD~vvv~vGtGgt~~Gl~~ 312 (460)
++..+..|+. +..||....|+.|++.||++|+. .. ||+||+|+||||+++|++.
T Consensus 143 -------------------a~~~g~~~~~--~~~~~~~~~G~~tig~EI~eq~~---~~~~~D~vv~~vG~GG~~aGva~ 198 (420)
T PRK08639 143 -------------------AEETGATFIP--PFDDPDVIAGQGTVAVEILEQLE---KEGSPDYVFVPVGGGGLISGVTT 198 (420)
T ss_pred -------------------HHhcCCcccC--CCCChhHhcchhHHHHHHHHhcc---ccCCCCEEEEecChhHHHHHHHH
Confidence 1112223333 34578888899999999999973 13 8999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhhHHHHHHhHHHH--HHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNLISE--FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 313 ~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~--~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
++++.+|+++|||||+++++....+...+.... -..++.++ ..+..++...+.+++++.++.+.|+|+|+.++++
T Consensus 199 ~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g---i~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~ 275 (420)
T PRK08639 199 YLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDG---AAVARVGDLTFEILKDVVDDVVLVPEGAVCTTIL 275 (420)
T ss_pred HHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecc---cccCCccHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 999999999999999999876443321111000 00011111 1122233446777888999999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHH
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
+|++++|+++||+ +|+++|+++++.+ .+ ++++||+|+||||.|+..+.+-..+-
T Consensus 276 ~l~~~~gi~~e~s-ga~~lAal~~~~~-~~-~~~~vv~v~sGgn~d~~~~~~~~~~~ 329 (420)
T PRK08639 276 ELYNKEGIVAEPA-GALSIAALELYKD-EI-KGKTVVCVISGGNNDIERMPEIKERS 329 (420)
T ss_pred HHHHhcCceecch-HHHHHHHHHhhhh-hc-CCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999996 7899999987653 33 68999999999999987766544333
No 44
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=4.9e-44 Score=376.33 Aligned_cols=322 Identities=15% Similarity=0.117 Sum_probs=233.8
Q ss_pred CCceeEeeecHHHHHHHHhhhhhhhcCCCcchhhhhccccc------cccCCCCCcccccCCCCCcccCCcccccCCCce
Q 012606 35 PQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTT------EKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC 108 (460)
Q Consensus 35 ~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~ 108 (460)
-.|++++.|+.+.+... .|. .....+|++..++|. .-.|+|||+++ + +. ..+ |.+
T Consensus 21 c~~~l~~~y~~~~~~~~----~~~--~~~~~~wry~~~lp~~~~~v~l~~G~TPLv~~--~-~~-~~~---------g~~ 81 (442)
T PRK05638 21 CGELLEIIYDYSSVDVR----KWK--NRDPGVWRYKELLPQVKKIISLGEGGTPLIRA--R-IS-EKL---------GEN 81 (442)
T ss_pred CCCcEEEEecccccchh----hhc--cCCCChhhhhhhCCCcCCccccCCCCCcEEcc--c-ch-HHh---------CCe
Confidence 35889999986644222 121 122455565444441 24699999998 5 34 222 579
Q ss_pred EEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHH
Q 012606 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIS 188 (460)
Q Consensus 109 l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~ 188 (460)
||+|+|++| | +||||||++.+++..|++.|.++||+ +|+||||+|+|++|+++|++|+||||+..+. .+..++
T Consensus 82 l~~K~E~~n-P-tGSfKdR~a~~~i~~a~~~g~~~vv~--aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~---~k~~~~ 154 (442)
T PRK05638 82 VYIKDETRN-P-TGSFRDRLATVAVSYGLPYAANGFIV--ASDGNAAASVAAYSARAGKEAFVVVPRKVDK---GKLIQM 154 (442)
T ss_pred EEEEeCCCC-C-CCChHHHHHHHHHHHHHHcCCCEEEE--eCCChHHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHH
Confidence 999999999 7 89999999999999999999999998 4789999999999999999999999998753 456688
Q ss_pred HhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCC
Q 012606 189 TIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGA 267 (460)
Q Consensus 189 ~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~ 267 (460)
+.||| |+.|++ +|++..+. ++++ ++ ..++|+++ +.
T Consensus 155 ~~~GA~vi~v~~-~~~~~~~~----a~~~-------------------------------------~~-~~~~~~~~-~~ 190 (442)
T PRK05638 155 IAFGAKIIRYGE-SVDEAIEY----AEEL-------------------------------------AR-LNGLYNVT-PE 190 (442)
T ss_pred HhcCcEEEEECC-CHHHHHHH----HHHH-------------------------------------HH-hCCeEecC-CC
Confidence 99999 999976 45543221 1111 11 12456554 45
Q ss_pred cchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCC------CCeEEEEeccCChhhHHHHHHh
Q 012606 268 GDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKN 341 (460)
Q Consensus 268 ~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~------~~~vigVe~~g~~~~~~~~~~~ 341 (460)
.||...+|++|+++||++|+ .||+||+|+|+||+++|++++|+++.+ .++|||||++++.+........
T Consensus 191 ~np~~~eG~~t~a~Ei~eq~-----~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~ 265 (442)
T PRK05638 191 YNIIGLEGQKTIAFELWEEI-----NPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGN 265 (442)
T ss_pred CChhHhhhHHHHHHHHHHHH-----CcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcC
Confidence 68999999999999999996 299999999999999999999998643 3799999998876533221111
Q ss_pred HHHHHHHHhcccc-ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-
Q 012606 342 LISEFKRLFGFLL-KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK- 419 (460)
Q Consensus 342 l~~~~~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~- 419 (460)
... ...+++.+. ++.+ ......+.+++++.+..+.++|+++.++++.++ ++||++||+ +|+++||++++.++.
T Consensus 266 ~~~-~~~t~a~gl~~~~p--~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~eps-saaa~Aa~~~~~~~g~ 340 (442)
T PRK05638 266 KTK-CNETKALGLYVKNP--VMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELS-SAVVMPALLKLGEEGY 340 (442)
T ss_pred CCC-CCCceeeeEeeCCC--CCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecch-HHHHHHHHHHHHHcCC
Confidence 000 001122211 1111 111234566778877778888888888888876 489999997 899999999987653
Q ss_pred CCCCCeEEEEecCCC-cc
Q 012606 420 LKQDADVVMLHTGGT-LG 436 (460)
Q Consensus 420 ~~~g~~Vv~i~TGG~-~~ 436 (460)
+.++++||+|+||++ .+
T Consensus 341 i~~~~~Vv~i~tG~g~k~ 358 (442)
T PRK05638 341 IEKGDKVVLVVTGSGLKG 358 (442)
T ss_pred CCCCCeEEEEeCCCCCCC
Confidence 567899999999954 44
No 45
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=3.1e-44 Score=364.66 Aligned_cols=288 Identities=16% Similarity=0.094 Sum_probs=215.2
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
|+|||+++ ++++ +.+ |++||+|+|++| | +||||+|++.+++.++++.|. ++||+ +|+|||
T Consensus 12 g~TPL~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~K~Rga~~~v~~a~~~g~~~~g~~vv~--aSsGN~ 75 (330)
T PRK10717 12 GNTPLIRL--NRAS-EAT---------GCEILGKAEFLN-P-GGSVKDRAALNIIWDAEKRGLLKPGGTIVE--GTAGNT 75 (330)
T ss_pred CCCceEEc--cccC-CCC---------CCeEEEEeeccC-C-CCCchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCcHH
Confidence 89999999 8888 433 679999999998 7 899999999999999999887 67887 478999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~ 233 (460)
|+|+|++|+++|++|+||||...++ .+..+++.||| |+.++...|++.+...+ .+++++
T Consensus 76 g~alA~~a~~~G~~~~vv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~~-~a~~~a---------------- 135 (330)
T PRK10717 76 GIGLALVAAARGYKTVIVMPETQSQ---EKKDLLRALGAELVLVPAAPYANPNNYVK-GAGRLA---------------- 135 (330)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEeCCcccccccchHH-HHHHHH----------------
Confidence 9999999999999999999998764 35567899998 99998642332111111 011111
Q ss_pred HHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHH
Q 012606 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (460)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~ 312 (460)
.++.+..++.++++.+..||.. ..||.+++.||++|+ + ..||+||+|+||||+++|+++
T Consensus 136 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql--~-~~~d~iv~~vG~GG~~~Gi~~ 195 (330)
T PRK10717 136 -----------------EELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQT--D-GKVDGFVCAVGTGGTLAGVSR 195 (330)
T ss_pred -----------------HHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhc--C-CCCCEEEEecCchHHHHHHHH
Confidence 1111222233556777888975 467999999999996 3 258999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhhHHHHHHh-HH---HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 313 GAICLGLPWEVTAIALVDTIDGYKQQEKN-LI---SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 313 ~~~~~g~~~~vigVe~~g~~~~~~~~~~~-l~---~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
+|++.+++++|||||+++++ .+.....+ .. ..+.+.++.+. + ...+.....++.+.|+|+|++++
T Consensus 196 ~~k~~~~~~~vi~Vep~~~~-~~~~~~~g~~~~~~~~~~~gl~~~~-------~---~~~~~~~~~d~~v~V~d~e~~~a 264 (330)
T PRK10717 196 YLKETNPKVKIVLADPTGSA-LYSYYKTGELKAEGSSITEGIGQGR-------I---TANLEGAPIDDAIRIPDEEALST 264 (330)
T ss_pred HHHHhCCCCEEEEEcCCCCc-cccccccCCcCCCCCcccCcCCCCc-------C---CcccChhhCCEEEEECHHHHHHH
Confidence 99999999999999999874 22211000 00 01112222111 0 11123344677999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCc
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTL 435 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~ 435 (460)
+++|++++||++|| ++|++++++++++++ +.++++||+|+|| |..
T Consensus 265 ~~~l~~~~gi~vep-ssga~laa~~~l~~~-~~~~~~Vv~v~~g~g~k 310 (330)
T PRK10717 265 AYRLLEEEGLCLGG-SSGINVAAALRLARE-LGPGHTIVTILCDSGER 310 (330)
T ss_pred HHHHHHhcCCeEee-cHHHHHHHHHHHHHh-cCCCCEEEEEECCCchh
Confidence 99999999999999 589999999998754 3568899999999 444
No 46
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=4.6e-44 Score=357.18 Aligned_cols=279 Identities=14% Similarity=0.063 Sum_probs=213.8
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
|+|||+++ ++++ +.+ |.+||+|+|++| | +||||+|++.+++..+.++|. ++||+ +|+|||
T Consensus 1 g~TPl~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tgS~K~R~a~~~l~~a~~~g~~~~~~~vv~--~SsGN~ 64 (291)
T cd01561 1 GNTPLVRL--NRLS-PGT---------GAEIYAKLEFFN-P-GGSVKDRIALYMIEDAEKRGLLKPGTTIIE--PTSGNT 64 (291)
T ss_pred CCCCEEEc--cccC-CCC---------CCeEEEEecccC-C-CCcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChH
Confidence 68999999 8887 433 679999999998 7 799999999999999999887 66887 478999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~ 233 (460)
|.|+|++|+++|++|+||||...+. .+..+++.||+ |+.++...+...+++.+ .+++
T Consensus 65 g~alA~~a~~~G~~~~i~vp~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~-~a~~------------------ 122 (291)
T cd01561 65 GIGLAMVAAAKGYRFIIVMPETMSE---EKRKLLRALGAEVILTPEAEADGMKGAIA-KARE------------------ 122 (291)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCcCCHHHHHH-HHHH------------------
Confidence 9999999999999999999997653 45667899998 99998652111111211 1111
Q ss_pred HHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHH-HHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHH
Q 012606 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVF-RLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (460)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~-t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~ 312 (460)
+.+..+. ++++.++.||..++|++ +++.||.+|+ + ..||+||+|+|+|||++|++.
T Consensus 123 -------------------~~~~~~~-~~~~~~~~~p~~~~g~~~t~~~Ei~~ql--~-~~~d~vv~~~G~Gg~~~Gi~~ 179 (291)
T cd01561 123 -------------------LAAETPN-AFWLNQFENPANPEAHYETTAPEIWEQL--D-GKVDAFVAGVGTGGTITGVAR 179 (291)
T ss_pred -------------------HHhhCCC-cEEecCCCCchHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCChHHHHHHHHH
Confidence 1222223 44556678999989987 9999999997 2 269999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 313 ~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
+|+++++.++|||||+++++.... . .. .....+.++.... ...+.+.+.++.+.|+|+|++++++.|
T Consensus 180 ~~~~~~~~~~vi~Ve~~~~~~~~~-~-~~-~~~~~~gi~~~~~----------~~~~~~~~~~~~~~V~d~e~~~a~~~l 246 (291)
T cd01561 180 YLKEKNPNVRIVGVDPVGSVLFSG-G-PP-GPHKIEGIGAGFI----------PENLDRSLIDEVVRVSDEEAFAMARRL 246 (291)
T ss_pred HHHHhCCCCEEEEEecCCCcccCC-C-CC-CCCcCCCCCCCCC----------CCccCchhCceeEEECHHHHHHHHHHH
Confidence 999999999999999998754311 0 00 0111122222111 112334467889999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
++++||++||+ +|+++++++++.+. ..++++||+|+||+
T Consensus 247 ~~~~gi~~eps-sa~a~a~~~~~~~~-~~~~~~vv~v~~~~ 285 (291)
T cd01561 247 AREEGLLVGGS-SGAAVAAALKLAKR-LGPGKTIVTILPDS 285 (291)
T ss_pred HHHhCeeEccc-HHHHHHHHHHHHHh-cCCCCeEEEEECCC
Confidence 99999999997 89999999988754 34678999999995
No 47
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.4e-43 Score=360.27 Aligned_cols=302 Identities=15% Similarity=0.057 Sum_probs=219.0
Q ss_pred CceeEeeecHHHHHHHHhhhhhhhcCCCcchhhhhccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCC
Q 012606 36 QGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDD 115 (460)
Q Consensus 36 ~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEd 115 (460)
-|++++.|+.+.. ...|....|... ++ .. .-+|+|||++. .+||+|+|.
T Consensus 25 g~~l~~~~d~~~~-----~~~~~~~lp~~~--~~-vs---lgeG~TPLv~~--------------------~~l~~K~E~ 73 (338)
T PRK06450 25 GGPFEILIDFEFD-----KNLERKNFPYIK--HF-IS---LGEGRTPLIKK--------------------GNIWFKLDF 73 (338)
T ss_pred CCEeEEeeccccc-----chhhHhhCCCCc--CC-CC---CCCCCCCceec--------------------CCEEEEecC
Confidence 4889999987632 135522223221 11 22 25699999986 259999999
Q ss_pred CCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-E
Q 012606 116 LLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-V 194 (460)
Q Consensus 116 ln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V 194 (460)
+| | |||||||.+.+++..|+++|.++||+. |+||||+|+|++|+++|++|+||||+..+.. +..+++.||| |
T Consensus 74 ~n-P-TGSfKDRga~~~i~~a~~~g~~~vv~a--SsGN~g~slA~~aa~~G~~~~i~vP~~~~~~---k~~~i~~~GA~v 146 (338)
T PRK06450 74 LN-P-TGSYKDRGSVTLISYLAEKGIKQISED--SSGNAGASIAAYGAAAGIEVKIFVPETASGG---KLKQIESYGAEV 146 (338)
T ss_pred CC-C-cCCCHHHHHHHHHHHHHHcCCCEEEEE--CCcHHHHHHHHHHHHcCCCEEEEEcCCCCHH---HHHHHHHcCCEE
Confidence 99 7 999999999999999999999999984 7899999999999999999999999987653 4567899998 9
Q ss_pred EEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHH
Q 012606 195 TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL 274 (460)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~ 274 (460)
+.|+.. |++..++ ++.. ..|+ ..+..||...+
T Consensus 147 i~v~~~-~~~~~~~---------------------------------------------a~~~-g~~~-~~~~~np~~ie 178 (338)
T PRK06450 147 VRVRGS-REDVAKA---------------------------------------------AENS-GYYY-ASHVLQPQFRD 178 (338)
T ss_pred EEECCC-HHHHHHH---------------------------------------------HHhc-CeEe-ccCCCCccHHH
Confidence 999863 5432111 0111 2222 23346899999
Q ss_pred HHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCC------CCeEEEEeccCChhhHHHHHHh-HHH-HH
Q 012606 275 GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKN-LIS-EF 346 (460)
Q Consensus 275 G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~------~~~vigVe~~g~~~~~~~~~~~-l~~-~~ 346 (460)
|++|+++||++|+ +|..||+||+|+|+||+++|++++|+++.+ .+|||+||++++.+........ ... .-
T Consensus 179 G~kTia~EI~eql--~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~ 256 (338)
T PRK06450 179 GIRTLAYEIAKDL--DWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDK 256 (338)
T ss_pred HHHHHHHHHHHHc--CCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCC
Confidence 9999999999996 444699999999999999999999998643 4799999999976543321100 000 00
Q ss_pred HHHhcccc-ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCe
Q 012606 347 KRLFGFLL-KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDAD 425 (460)
Q Consensus 347 ~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~ 425 (460)
.++++.++ ++.+ ......+.++++. +..+.|+|+|+++++++|++ +||++||+ +|+++||++++ ++++
T Consensus 257 ~~tia~~l~~~~p--~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~veps-saaalAa~~~l------~~~~ 325 (338)
T PRK06450 257 VTSIADALVSTRP--FLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYS-SATVYAAYKKY------SVND 325 (338)
T ss_pred CCcceeeeecCCC--CCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChh-HHHHHHHHHHC------CCCC
Confidence 01222221 1111 0112234556676 78999999999999999987 69999997 78999999875 2478
Q ss_pred EEEEecC-CCcc
Q 012606 426 VVMLHTG-GTLG 436 (460)
Q Consensus 426 Vv~i~TG-G~~~ 436 (460)
||+|+|| |+++
T Consensus 326 vv~vltG~glK~ 337 (338)
T PRK06450 326 SVLVLTGSGLKV 337 (338)
T ss_pred EEEEeCCCCccC
Confidence 9999999 5544
No 48
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=7e-44 Score=357.12 Aligned_cols=277 Identities=17% Similarity=0.097 Sum_probs=210.9
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
|+|||+++ ++ . ..+ |.+||+|+|++| | +||||+|++.+++..+++.|. ++||+ +|+|||
T Consensus 6 g~TPl~~~--~~-~-~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~--aSsGN~ 68 (298)
T TIGR01139 6 GNTPLVRL--NR-I-EGC---------NANVFVKLEGRN-P-SGSVKDRIALNMIWDAEKRGLLKPGKTIVE--PTSGNT 68 (298)
T ss_pred CCCceEEc--cc-c-CCC---------CceEEEEEcccC-C-CCcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChh
Confidence 89999999 77 3 222 679999999999 7 899999999999999999987 66876 478999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~ 233 (460)
|+|+|++|+++|++|+||||+..++. +..+++.||| |+.+++. ++..+ ..+ .|++
T Consensus 69 g~alA~~a~~~Gl~~~i~vp~~~~~~---k~~~~~~~GA~v~~~~~~-~~~~~-~~~-~a~~------------------ 124 (298)
T TIGR01139 69 GIALAMVAAARGYKLILTMPETMSIE---RRKLLKAYGAELVLTPGA-EGMKG-AIA-KAEE------------------ 124 (298)
T ss_pred HHHHHHHHHHcCCeEEEEeCCccCHH---HHHHHHHcCCEEEEECCC-CCHHH-HHH-HHHH------------------
Confidence 99999999999999999999987643 4557899998 9999864 43111 111 1221
Q ss_pred HHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHH
Q 012606 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (460)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~ 312 (460)
+.++.+.+|+++.++.||.. ..||.+++.||++|+ ++ .||+||+|+|+||+++|++.
T Consensus 125 -------------------~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vv~~vG~Gg~~~Gi~~ 182 (298)
T TIGR01139 125 -------------------IAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDT--DG-KLDAFVAGVGTGGTITGVGE 182 (298)
T ss_pred -------------------HHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHh--CC-CCCEEEEecchhHhHHHHHH
Confidence 22223344666777778773 668999999999997 32 59999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 313 ~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
+|++++++++|||||+.+++...... .. ....+.++.+.++ ..+.....++.+.|+|+|+++++++|
T Consensus 183 ~~~~~~~~~~vi~Ve~~~~~~~~~~~-~~--~~~~~gl~~~~~~----------~~~~~~~~d~~~~V~d~e~~~a~~~l 249 (298)
T TIGR01139 183 VLKEQKPNIKIVAVEPAESPVLSGGK-PG--PHKIQGIGAGFIP----------KNLNRSVIDEVITVSDEEAIETARRL 249 (298)
T ss_pred HHHhcCCCCEEEEEecCCCcccCCCC-CC--CCCCCCCCCCCCC----------CccChhhCCEEEEECHHHHHHHHHHH
Confidence 99999999999999999875422111 00 0000111211111 11223345678999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
++++||++||+ +|+++++++++.+. +.++++||+|+|++
T Consensus 250 ~~~~gi~~~ps-sga~laa~~~~~~~-~~~~~~vv~v~~d~ 288 (298)
T TIGR01139 250 AAEEGILVGIS-SGAAVAAALKLAKR-PEPDKLIVVILPST 288 (298)
T ss_pred HHhcCceEccc-HHHHHHHHHHHHHh-cCCCCEEEEEECCC
Confidence 99999999997 89999999988754 44678999999885
No 49
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=6.9e-44 Score=365.23 Aligned_cols=296 Identities=15% Similarity=0.121 Sum_probs=221.0
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..|+|||+++ ++|+ +.+ |++||+|+|++| | +||||||++.+++..++++|.++||++ |+||||+
T Consensus 28 ~~g~TPl~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGSfKdR~a~~~l~~a~~~g~~~iv~a--SsGN~g~ 91 (353)
T PRK07409 28 GEGNTPLIPA--PNLS-ELL---------GVEVYVKYEGLN-P-TGSFKDRGMTMAVTKAKEEGAKAVICA--STGNTSA 91 (353)
T ss_pred CCCCCCEEEc--hhhH-HHh---------CCeEEEEecCCC-C-ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHH
Confidence 4599999999 8887 433 679999999999 7 899999999999999999999999984 7899999
Q ss_pred HHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
|+|++|+.+|++|+||||+.. +. .+..+++.||| |+.++. .++++.+.. +++
T Consensus 92 alA~~a~~~G~~~~ivvP~~~~~~---~k~~~~~~~GA~Vi~~~~-~~~~~~~~a----~~l------------------ 145 (353)
T PRK07409 92 SAAAYAARAGLKAFVLIPEGKIAL---GKLAQAVMYGAEIIQIDG-NFDDALEIV----REL------------------ 145 (353)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCch---hhHHHHHhcCCEEEEECC-CHHHHHHHH----HHH------------------
Confidence 999999999999999999863 43 24456899998 999986 355433222 111
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
.+..+ .++++ ..||..++|+.+++.||++|+ + ..||+||+|+||||+++|++++|
T Consensus 146 -------------------~~~~~-~~~~~--~~n~~~~~g~~t~~~EI~~q~--~-~~~d~iv~~vG~GG~~~Gi~~g~ 200 (353)
T PRK07409 146 -------------------AEKYP-VTLVN--SVNPYRIEGQKTAAFEIVDAL--G-DAPDYHCIPVGNAGNITAYWKGY 200 (353)
T ss_pred -------------------HHhcC-ceecC--CCCchhhhhHHHHHHHHHHHh--C-CCCCEEEEeCCChHHHHHHHHHH
Confidence 11122 33333 358888999999999999997 2 36999999999999999999999
Q ss_pred HhcCC------CCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 315 ICLGL------PWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 315 ~~~g~------~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
++..+ .++|||||++++...+..........+.+.++.+ .|..+ ...+.+++++.+..+.|+|+|++++
T Consensus 201 ~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~-~~~~~----~~~~~~~~~~~~~~v~Vsd~e~~~a 275 (353)
T PRK07409 201 KEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIG-NPASW----DKAVAARDESGGLIDAVTDEEILEA 275 (353)
T ss_pred HHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecC-CCCCH----HHHHHHHHHhCCEEEEECHHHHHHH
Confidence 87532 4899999999875433111000001111111111 01111 1122346667778899999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecC-CCcchhhHHHHHH
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTG-GTLGMFGLAQRYK 445 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TG-G~~~~~~~~~ry~ 445 (460)
+++|++++|+++||+ +|+++++++++.++ .+.++++||+|+|| |+.+.....+.+.
T Consensus 276 ~~~l~~~egi~v~ps-sa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~~~~~~ 333 (353)
T PRK07409 276 YRLLARKEGVFCEPA-SAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTAIKQAD 333 (353)
T ss_pred HHHHHHhCCceeCch-HHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHHHhhcc
Confidence 999999999999997 79999999887654 24568899999999 9998876544433
No 50
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.4e-43 Score=362.62 Aligned_cols=285 Identities=14% Similarity=0.118 Sum_probs=212.3
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..|+|||+++ ++++ +.+ |.+||+|+|++| | +||||+|++.+++.+|+++|.++||++ |+||||+
T Consensus 25 ~~G~TPl~~l--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~ 88 (352)
T PRK06721 25 MEGNTPLIPL--LNIS-KQL---------GIQLYGKYEGAN-P-TGSFKDRGMVMAVAKAKEEGSEAIICA--STGNTSA 88 (352)
T ss_pred CcCCCCeeEc--hhhH-HHh---------CCeEEEEecCCC-C-ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHH
Confidence 3499999999 8887 433 579999999999 7 899999999999999999999999985 7899999
Q ss_pred HHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
|+|++|+++|++|+||||+.. ++ .+..+++.||| |+.++++ +++..+.. ++++
T Consensus 89 alA~~aa~~G~~~~vvvp~~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~a----~~~~----------------- 143 (352)
T PRK06721 89 SAAAYAARLGMKCIIVIPEGKIAH---GKLAQAVAYGAEIISIEGN-FDDALKAV----RNIA----------------- 143 (352)
T ss_pred HHHHHHHHCCCcEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHHH----HHHH-----------------
Confidence 999999999999999999864 32 35567899999 9999863 55432221 1111
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
+.. ..+++ +..||...+||.++++||++|+. ..||+||+|+||||+++|++.++
T Consensus 144 --------------------~~~-~~~~~--~~~n~~~~~G~~t~~~Ei~eq~~---~~~D~ivv~vG~GG~l~G~~~G~ 197 (352)
T PRK06721 144 --------------------AEE-PITLV--NSVNPYRIEGQKTAAFEICDQLQ---RAPDVLAIPVGNAGNITAYWKGF 197 (352)
T ss_pred --------------------HhC-Cceec--cCCCchhhhhhhhHHHHHHHHhC---CCCCEEEEeCCchHHHHHHHHHH
Confidence 111 12333 34588888999999999999972 36999999999999999876665
Q ss_pred ----HhcC-CCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHH
Q 012606 315 ----ICLG-LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (460)
Q Consensus 315 ----~~~g-~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (460)
++.+ +.++|||||+++++.............+++.++.+ .|..+ ...+...+.+.+..+.|+|+|+++++
T Consensus 198 ~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~-~~~~~----~~~~~~~~~~~~~~~~V~d~e~~~a~ 272 (352)
T PRK06721 198 CEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIG-NPASW----SYAVEAAEQSHGEIDMVSDEEILHAY 272 (352)
T ss_pred HHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccC-CCCCH----HHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 4445 88999999999876432211100001111111110 01000 11233356678889999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCC
Q 012606 390 HRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT 434 (460)
Q Consensus 390 r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~ 434 (460)
++|++++||++||+ +|+++|+++++.+. .+.++++||+|+||+.
T Consensus 273 ~~la~~eGi~veps-sgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g 317 (352)
T PRK06721 273 RLLAKSEGVFAEPG-SNASLAGVMKHVQSGKIKKGETVVAVLTGNG 317 (352)
T ss_pred HHHHHhcCcccCch-HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCC
Confidence 99999999999997 58999999998754 3566889999999964
No 51
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=9.5e-44 Score=360.01 Aligned_cols=290 Identities=17% Similarity=0.180 Sum_probs=217.5
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..|+|||+++ ++|+ ..+| +.+||+|+|++| | +||||+|++.+++..+++.|.++||++ |+||||.
T Consensus 19 ~~g~TPl~~~--~~l~-~~~g--------~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~vv~~--SsGN~g~ 83 (324)
T cd01563 19 GEGNTPLVRA--PRLG-ERLG--------GKNLYVKDEGLN-P-TGSFKDRGMTVAVSKAKELGVKAVACA--STGNTSA 83 (324)
T ss_pred CCCCCceeec--hhhH-hhcC--------CCceEEEecCCC-C-cccHHHhhHHHHHHHHHHcCCCEEEEe--CCCHHHH
Confidence 3499999999 8887 3332 479999999998 7 899999999999999999999999985 6899999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
|+|++|+.+|++|+||||...++ .+..+++.||| |+.++. .++++... +++
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~---~k~~~l~~~GA~Vi~~~~-~~~~~~~~----a~~-------------------- 135 (324)
T cd01563 84 SLAAYAARAGIKCVVFLPAGKAL---GKLAQALAYGATVLAVEG-NFDDALRL----VRE-------------------- 135 (324)
T ss_pred HHHHHHHHcCCceEEEEeCCCCH---HHHHHHHHcCCEEEEECC-cHHHHHHH----HHH--------------------
Confidence 99999999999999999998754 34567899998 999986 35443222 111
Q ss_pred hhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~ 315 (460)
+.+.. ..|+ .+..||...+||.+++.||++|+ ++..||+||+|+|||||++|++.+|+
T Consensus 136 -----------------~~~~~-~~~~--~~~~n~~~~~g~~t~~~Ei~~q~--~~~~~d~vv~~vGtGg~~~G~~~~~k 193 (324)
T cd01563 136 -----------------LAEEN-WIYL--SNSLNPYRLEGQKTIAFEIAEQL--GWEVPDYVVVPVGNGGNITAIWKGFK 193 (324)
T ss_pred -----------------HHHhc-Ceec--cCCCCcceecchhhhHHHHHHHc--CCCCCCEEEEecCCcHHHHHHHHHHH
Confidence 11112 2333 33578888889999999999997 22369999999999999999999999
Q ss_pred hcC------CCCeEEEEeccCChhhHHHHHHh---HHH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHH
Q 012606 316 CLG------LPWEVTAIALVDTIDGYKQQEKN---LIS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGE 385 (460)
Q Consensus 316 ~~g------~~~~vigVe~~g~~~~~~~~~~~---l~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~ 385 (460)
.+. +.++|||||+.++...+.....+ ... ....++..++ ....+...+..+.+++++.++.+.|+|+|+
T Consensus 194 ~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl-~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~ 272 (324)
T cd01563 194 ELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAI-RIGNPASGPKALRAVRESGGTAVAVSDEEI 272 (324)
T ss_pred HHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeee-ecCCCCCHHHHHHHHHHhCCEEEEECHHHH
Confidence 764 57999999999875443321110 000 0001111111 000000112344567778888999999999
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCC
Q 012606 386 IEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGG 433 (460)
Q Consensus 386 ~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~~~g~~Vv~i~TGG 433 (460)
+++++++++++|+++||+ +|+++++++++.++. +.++++||+|+||+
T Consensus 273 ~~a~~~l~~~~gi~~~ps-sa~alaa~~~l~~~~~~~~~~~Vv~v~tg~ 320 (324)
T cd01563 273 LEAQKLLARTEGIFVEPA-SAASLAGLKKLREEGIIDKGERVVVVLTGH 320 (324)
T ss_pred HHHHHHHHhcCCceeCch-HHHHHHHHHHHHHcCCCCCCCcEEEEeCCC
Confidence 999999999999999997 899999999887543 55688999999995
No 52
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=3e-43 Score=366.34 Aligned_cols=289 Identities=14% Similarity=0.075 Sum_probs=221.0
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++++ +.+ |.+||+|+|++| | +||||+|.+.+++.++. +.+.++||++ |+||||+|
T Consensus 22 ~~TPl~~~--~~l~-~~~---------g~~l~~K~E~~n-p-tGS~KdR~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 85 (403)
T PRK07334 22 LRTPCVHS--RTLS-QIT---------GAEVWLKFENLQ-F-TASFKERGALNKLLLLTEEERARGVIAM--SAGNHAQG 85 (403)
T ss_pred CCCCccch--HHHH-Hhh---------CCeEEEEeccCC-C-CCCchHHHHHHHHHhcCHHHhCCcEEEE--CCcHHHHH
Confidence 89999999 8887 443 579999999999 7 89999999999998753 4455678874 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||...++ .+..+++.||| |+.++. .+++..+. |+++
T Consensus 86 lA~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~-~~~~~~~~----a~~l-------------------- 137 (403)
T PRK07334 86 VAYHAQRLGIPATIVMPRFTPT---VKVERTRGFGAEVVLHGE-TLDEARAH----AREL-------------------- 137 (403)
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECc-CHHHHHHH----HHHH--------------------
Confidence 9999999999999999998764 34567899998 998875 35542222 2221
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++.. +.|++ .+..||...+||.+++.||++|+ +.||+||+|+|||||++|++++|++
T Consensus 138 -----------------~~~~-~~~~~-~~~~~~~~~~g~~t~~~Ei~~q~----~~~d~vv~~vG~GG~~~Gi~~~lk~ 194 (403)
T PRK07334 138 -----------------AEEE-GLTFV-HPYDDPAVIAGQGTVALEMLEDA----PDLDTLVVPIGGGGLISGMATAAKA 194 (403)
T ss_pred -----------------HHhc-CCEec-CCCCCHHHHHhHHHHHHHHHhcC----CCCCEEEEecCHHHHHHHHHHHHHH
Confidence 1122 22333 34557888899999999999996 3689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHH----HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLI----SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~----~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
.++.++|+|||+++++..+.+...... ..+++.++ ...+....+.+.+.+.+..+.|+|+|+++++++|
T Consensus 195 ~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~-------~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l 267 (403)
T PRK07334 195 LKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIA-------VKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLL 267 (403)
T ss_pred hCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceec-------CCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHH
Confidence 999999999999997664432111100 01111111 1111223455677889999999999999999999
Q ss_pred HHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHH
Q 012606 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRY 444 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry 444 (460)
++++|+++||+ +|+++|+++++.+. .++++||+|+||||.+...+.+-+
T Consensus 268 ~~~~gi~v~~s-~a~~~aa~~~~~~~--~~~~~vv~i~~ggn~d~~~l~~il 316 (403)
T PRK07334 268 LEIEKTVVEGA-GAAGLAALLAYPER--FRGRKVGLVLSGGNIDTRLLANVL 316 (403)
T ss_pred HHhcCCEEech-HHHHHHHHHhCchh--cCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999996 78999998876542 357899999999999877665433
No 53
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.2e-43 Score=361.72 Aligned_cols=310 Identities=15% Similarity=0.077 Sum_probs=220.2
Q ss_pred hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCC
Q 012606 70 KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGG 149 (460)
Q Consensus 70 ~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Ga 149 (460)
..++++|++.+|||+++ ++++ +.+| +.+||+|+|++| | +||||+|.+..++..+.++|.+++|+.+
T Consensus 24 ~~~~~~~~~~~TPL~~l--~~l~-~~~g--------~~~l~~K~E~~n-p-tgS~K~R~a~~~~~~a~~~g~~~vv~~~- 89 (365)
T cd06446 24 RELYKDYVGRPTPLYRA--KRLS-EYLG--------GAKIYLKREDLN-H-TGAHKINNALGQALLAKRMGKKRVIAET- 89 (365)
T ss_pred HHHhhccCCCCCCceeh--HHHH-HhhC--------CceEEEEeccCC-C-ccchhHHHHHHHHHHHHHcCCCeEEEec-
Confidence 55666667789999999 8887 4442 579999999999 6 7899999999999889999999888742
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCc--hhhHHHHHHHHhhhhhcCCCCccch
Q 012606 150 CQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH--YAHRIEMLKSYANLVAGNNGDVVWC 226 (460)
Q Consensus 150 s~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~--~~~~~~~~~~~A~~la~~~g~~~w~ 226 (460)
|+||||+|+|++|+++|++|+||||...+..+..|..++++||| |+.++... ++. .....++..+
T Consensus 90 ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~---~~~~a~~~~~--------- 157 (365)
T cd06446 90 GAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKD---AISEAIRDWV--------- 157 (365)
T ss_pred CchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHH---HHHHHHHHHH---------
Confidence 56999999999999999999999998644323346667899998 99998532 222 1111011000
Q ss_pred hhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-Ccch---HHHHHHHHHHHHHHHhHHc-CCCCCCEEEEec
Q 012606 227 NEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDA---VALLGVFRLLQYLSQDHLL-GRKRAIKFVVDA 301 (460)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~np---~~~~G~~t~~~Ei~eq~~~-~~~~pD~vvv~v 301 (460)
......+|++... +.+| ....|+.++++||++|+.. ++..||+||+|+
T Consensus 158 ---------------------------~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~v 210 (365)
T cd06446 158 ---------------------------TNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACV 210 (365)
T ss_pred ---------------------------hccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 0101123433211 1122 3367899999999999841 113699999999
Q ss_pred CCchhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHH----hHH---HHH--------------HHHhccccccCCcc
Q 012606 302 GTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEK----NLI---SEF--------------KRLFGFLLKKSSLN 360 (460)
Q Consensus 302 GtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~----~l~---~~~--------------~~~i~~~~~p~~~~ 360 (460)
|||||++|++++|++ .++++|||||+++++........ +.. .+. ..++..++ .+.
T Consensus 211 G~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl---~~~ 286 (365)
T cd06446 211 GGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGL---DYP 286 (365)
T ss_pred CccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccc---cCC
Confidence 999999999999986 46899999999987643211000 000 000 00111111 111
Q ss_pred cccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchh
Q 012606 361 EVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMF 438 (460)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~ 438 (460)
.+.+..+.+.+++.++.+.|+|+|+++++++|++++||++|| |+|+++|+++++.++ ..++++||+|+|| |+.++.
T Consensus 287 ~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~ep-ssgaalAa~~~~~~~-~~~~~~Vv~i~~g~G~k~~~ 363 (365)
T cd06446 287 GVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPAL-ESSHAIAYAIKLAKK-LGKEKVIVVNLSGRGDKDLQ 363 (365)
T ss_pred CCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCc-cchHHHHHHHHHHHh-cCCCCeEEEEeCCCCccccc
Confidence 122334445667788999999999999999999999999999 689999999998764 3567899999999 988754
No 54
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=4.9e-43 Score=352.92 Aligned_cols=285 Identities=14% Similarity=-0.007 Sum_probs=213.9
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~Al 158 (460)
++|||+++ ++++ .. +.+||+|+|++| | +||||+|.+.+++..+.+ +.++||++ |+||||+|+
T Consensus 22 ~~TPl~~~--~~l~-~~----------~~~i~~K~E~~n-p-tGS~K~R~a~~~~~~~~~-~~~~vv~a--SsGN~g~a~ 83 (310)
T PRK08246 22 RRTPVLEA--DGAG-FG----------PAPVWLKLEHLQ-H-TGSFKARGAFNRLLAAPV-PAAGVVAA--SGGNAGLAV 83 (310)
T ss_pred CCCCeeec--cccc-cC----------CCEEEEEECCCC-C-CCCCHHHHHHHHHHhhcc-cCCeEEEe--CCCHHHHHH
Confidence 89999999 8876 21 479999999999 7 899999999998888766 66788874 679999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhh
Q 012606 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (460)
Q Consensus 159 A~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~ 237 (460)
|++|+++|++|+||||...++. ++.+++.||+ |+.++.. +++..+. ++++
T Consensus 84 A~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~~--------------------- 134 (310)
T PRK08246 84 AYAAAALGVPATVFVPETAPPA---KVARLRALGAEVVVVGAE-YADALEA----AQAF--------------------- 134 (310)
T ss_pred HHHHHHcCCCEEEEECCCCcHH---HHHHHHHCCCEEEEeCCC-HHHHHHH----HHHH---------------------
Confidence 9999999999999999887643 4567899998 9999863 5432221 1111
Q ss_pred hhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhc
Q 012606 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (460)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~ 317 (460)
.+.. ..| .+.+..||....|+.++++||++|+ +.||+||+|+|+|||++|++.+|+.
T Consensus 135 ----------------~~~~-g~~-~~~~~~n~~~i~g~~t~~~Ei~eq~----~~~D~iv~~vG~GG~~~Gi~~~~~~- 191 (310)
T PRK08246 135 ----------------AAET-GAL-LCHAYDQPEVLAGAGTLGLEIEEQA----PGVDTVLVAVGGGGLIAGIAAWFEG- 191 (310)
T ss_pred ----------------HHhc-CCE-eCCCCCChhhhcchHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHhcC-
Confidence 1111 223 3445668888899999999999996 3699999999999999999999973
Q ss_pred CCCCeEEEEeccCChhhHHHHHHhH-HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHh
Q 012606 318 GLPWEVTAIALVDTIDGYKQQEKNL-ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT 396 (460)
Q Consensus 318 g~~~~vigVe~~g~~~~~~~~~~~l-~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~e 396 (460)
.++|+|||+++++..+.+...+. .......+..+.+ ..+.++...+.+.+++.++.+.|+|+|+++++++|++++
T Consensus 192 --~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~e 267 (310)
T PRK08246 192 --RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSL--GARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEEL 267 (310)
T ss_pred --CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccc--cCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHc
Confidence 48999999999876443322111 0000000010100 111123345667888899999999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhh
Q 012606 397 GILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFG 439 (460)
Q Consensus 397 GI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~ 439 (460)
||++||+ +|+++|++++... .+.++++||+|+||||.|...
T Consensus 268 gi~~e~s-~aa~lAa~~~~~~-~~~~~~~vv~i~~g~n~d~~~ 308 (310)
T PRK08246 268 RLAVEPG-AATALAALLSGAY-VPAPGERVAVVLCGANTDPAT 308 (310)
T ss_pred CceeehH-HHHHHHHHHhCCc-cccCCCeEEEEECCCCCChhh
Confidence 9999996 7888999875432 234578999999999998764
No 55
>PLN02569 threonine synthase
Probab=100.00 E-value=9.8e-43 Score=367.78 Aligned_cols=334 Identities=15% Similarity=0.077 Sum_probs=237.0
Q ss_pred CCceeEeeecHHHHHH-------H-HhhhhhhhcC-CCcchhhhhc-ccc--------ccccCCCCCcccccCCCCCcc-
Q 012606 35 PQGICNVRMSGEELLS-------R-LLDRKWALTS-PDSKIHQIKL-FTT--------TEKHGGGPLGGISFLNNTCPF- 95 (460)
Q Consensus 35 ~~~~~~~~~~~e~~~~-------~-l~~~~~~~~~-~~~~~~~~~~-~~~--------~~~~g~TPL~~~~~~~l~~~~- 95 (460)
-.|++++.|+.+.+.. . +..+.+.... ..+.+|++.. ++| ++.+|+|||+++ ++|. +.
T Consensus 70 cgg~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~--~~l~-~~~ 146 (484)
T PLN02569 70 SGGLLDVRHDMEALKRYDGKYWRALFDSRVGKTTWPYGSGVWSKKEWVLPEIDDDDIVSLFEGNSNLFWA--ERLG-KEF 146 (484)
T ss_pred CCCeEEEecchhhhccccchhhhhhHhcccccccCCCCCCccccccccCCCCCcccceecCCCCCceeEh--hhhh-Hhh
Confidence 3699999999775521 1 1111111111 1134566544 222 245699999999 8887 43
Q ss_pred cCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC-----CeEEEeCCccchHHHHHHHHHHHhCCeEE
Q 012606 96 LGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (460)
Q Consensus 96 ~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~-----~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~ 170 (460)
+| -.+||+|+|.+| | |||||||.+.+++..+++.|. .+||+ +|+||||+|+|++|+++|++|+
T Consensus 147 ~G--------~~~l~~K~E~~n-P-TGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~--ASSGN~GaAlAayaa~~Gl~~~ 214 (484)
T PLN02569 147 LG--------MNDLWVKHCGIS-H-TGSFKDLGMTVLVSQVNRLRKMAKPVVGVGC--ASTGDTSAALSAYCAAAGIPSI 214 (484)
T ss_pred cC--------CccEEEEECCCC-C-CcCHHHHHHHHHHHHHHHhhhccCCccEEEE--eCCcHHHHHHHHHHHhcCCeEE
Confidence 32 148999999999 7 999999999999999988765 56776 4789999999999999999999
Q ss_pred EEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccc
Q 012606 171 LLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDA 249 (460)
Q Consensus 171 iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 249 (460)
||||+..+. ..+..+++.||| |+.|++ .|++..+..+ ++
T Consensus 215 I~vP~~~~~--~~k~~qi~a~GA~Vi~v~g-~~d~a~~~a~----e~--------------------------------- 254 (484)
T PLN02569 215 VFLPADKIS--IAQLVQPIANGALVLSIDT-DFDGCMRLIR----EV--------------------------------- 254 (484)
T ss_pred EEEcCCCCC--HHHHHHHHhcCCEEEEECC-CHHHHHHHHH----HH---------------------------------
Confidence 999986332 134567899998 999987 4665433321 11
Q ss_pred cccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhc---C---CCCeE
Q 012606 250 HKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL---G---LPWEV 323 (460)
Q Consensus 250 ~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~---g---~~~~v 323 (460)
.++. ..|+++. .||..++|++|++.||++|+ +|..||+||+|+|+||+++|++++|+++ | ..+||
T Consensus 255 ----~~~~-~~~~~n~--~Np~~ieG~kT~a~EI~eQl--~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Pri 325 (484)
T PLN02569 255 ----TAEL-PIYLANS--LNSLRLEGQKTAAIEILQQF--DWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRL 325 (484)
T ss_pred ----HHHc-CCEecCC--CCcchhHhHHHHHHHHHHHc--CCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeE
Confidence 1111 2344443 38999999999999999996 5545999999999999999999999975 2 35799
Q ss_pred EEEeccCChhhHHHHHHhH--------HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHH
Q 012606 324 TAIALVDTIDGYKQQEKNL--------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQL 395 (460)
Q Consensus 324 igVe~~g~~~~~~~~~~~l--------~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~ 395 (460)
|+||++++...+.....+. ...+++.++.+ .|..+ ...+..+++..+..+.|+|+|+++++++ +++
T Consensus 326 v~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~-~P~~~----~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~ 399 (484)
T PLN02569 326 VCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIG-DPVSI----DRAVYALKESNGIVEEATEEELMDAQAE-ADK 399 (484)
T ss_pred EEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccC-CCccH----HHHHHHHHHhCCEEEEECHHHHHHHHHH-HHH
Confidence 9999999765443221110 01122222221 11111 1234456666776799999999999999 899
Q ss_pred hCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecC-CCcchhh
Q 012606 396 TGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTG-GTLGMFG 439 (460)
Q Consensus 396 eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TG-G~~~~~~ 439 (460)
+||++||+ +|+++||++++.++ .+.++++||+|+|| |......
T Consensus 400 ~Gi~veps-sAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 400 TGMFLCPH-TGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred CCcEECch-HHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 99999997 79999999998765 36678899999999 6666443
No 56
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-42 Score=353.68 Aligned_cols=279 Identities=13% Similarity=0.023 Sum_probs=212.0
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCC-eEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT-DLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~-~VVt~Gas~GNhg~A 157 (460)
++|||+++ +.+ +||+|+|++| | +||||+|.+.+++..+.+.+.. .||++ |+||||+|
T Consensus 38 ~~TPL~~~--~~l----------------~v~lK~E~~n-p-tGSfK~RgA~~~l~~a~~~~~~~~VV~a--SsGN~G~a 95 (349)
T PRK08813 38 SPTPLHYA--ERF----------------GVWLKLENLQ-R-TGSYKVRGALNALLAGLERGDERPVICA--SAGNHAQG 95 (349)
T ss_pred CCCCeEEC--CCC----------------cEEEEecCCC-C-cCCCHHHHHHHHHHHHHHcCCCCeEEEE--CCCHHHHH
Confidence 79999987 332 3999999999 7 8999999999999999888864 67874 77999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+.+|++|+||||...++. +..+++.||| |+.++. +|++..+. |+++
T Consensus 96 lA~aa~~~Gi~~~IvvP~~~~~~---K~~~i~~~GAeVv~~g~-~~~~a~~~----a~~l-------------------- 147 (349)
T PRK08813 96 VAWSAYRLGVQAITVMPHGAPQT---KIAGVAHWGATVRQHGN-SYDEAYAF----AREL-------------------- 147 (349)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988653 4456799998 998875 46643322 2221
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++.. +.|+++ +..||..++|+.|+++||++| .||+||+|+|+||+++|++++|++
T Consensus 148 -----------------a~~~-g~~~v~-~~~np~~i~G~~Tig~EI~e~------~pD~VvvpvGgGGliaGia~~lk~ 202 (349)
T PRK08813 148 -----------------ADQN-GYRFLS-AFDDPDVIAGQGTVGIELAAH------APDVVIVPIGGGGLASGVALALKS 202 (349)
T ss_pred -----------------HHhc-CCEEcC-ccCChHHHHHHHHHHHHHHcC------CCCEEEEEeCccHHHHHHHHHHhc
Confidence 1112 334443 356889999999999999987 479999999999999999999995
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLIS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQL 395 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~ 395 (460)
+.++|||||++++++...+....... ....++.++. ....++...+.+..++.++.+.|+|+|+.+++++|+++
T Consensus 203 --~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl---~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~ 277 (349)
T PRK08813 203 --QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGV---KVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALE 277 (349)
T ss_pred --CCCEEEEEEECCCchHHHHHcCCCcccCCCCceeccc---ccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 46999999999987644332111000 0001122211 11112234566778889999999999999999999999
Q ss_pred hCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHH
Q 012606 396 TGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRY 444 (460)
Q Consensus 396 eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry 444 (460)
+|+++||+ +|+++|+++++ ++++|++|+||||+|...+..-+
T Consensus 278 ~gl~vE~a-ga~alAa~~~~------~~~~v~~vlsGgN~d~~~~~~~~ 319 (349)
T PRK08813 278 EHVIAEGA-GALALAAGRRV------SGKRKCAVVSGGNIDATVLATLL 319 (349)
T ss_pred cCcEEEEc-HHHHHHHHHHh------CCCCEEEEECCCCCCHHHHHHHH
Confidence 99999996 78999998652 36789999999999987765533
No 57
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.2e-42 Score=363.28 Aligned_cols=309 Identities=14% Similarity=0.080 Sum_probs=226.9
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHH-----HHhcCC-----------
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV----------- 141 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~-----a~~~g~----------- 141 (460)
.++|||+++ ++++ +.+|... ....+.+||+|+|++| |.+||||+|.+.++|.. +++.|.
T Consensus 73 ~~~TPL~~~--~~l~-~~~g~~~-~~~~~~~V~lK~E~~n-p~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~ 147 (441)
T PRK02991 73 IIESPLVAI--PAMQ-KALEKEY-GQPISGRLLLKKDSHL-PISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLA 147 (441)
T ss_pred ccCCCceeh--HHHH-HHhcccc-cCCcCceEEEEEcCCC-CCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhc
Confidence 589999999 8887 4432000 0000269999999999 65799999999888764 445663
Q ss_pred ----------CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHH
Q 012606 142 ----------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLK 210 (460)
Q Consensus 142 ----------~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~ 210 (460)
++||++ |+||||+|+|++|+.+|++|+||||+..|+. +...++.||| |+.++. .|++..+.
T Consensus 148 ~~~~~~~~~~~~VV~a--SsGN~G~alA~aA~~~G~~~tIvvP~~a~~~---K~~~ir~~GAeVi~~~~-~~~~a~~~-- 219 (441)
T PRK02991 148 SPEFRQFFSQYSIAVG--STGNLGLSIGIMSAALGFKVTVHMSADARQW---KKDKLRSHGVTVVEYEG-DYGVAVEE-- 219 (441)
T ss_pred chhhhhhccCcEEEEE--CCcHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH--
Confidence 368874 7899999999999999999999999988754 4456899998 999886 46643322
Q ss_pred HHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHc-
Q 012606 211 SYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL- 289 (460)
Q Consensus 211 ~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~- 289 (460)
|+++ ++..+..|+++. ..+|....||.|++.||++|+..
T Consensus 220 --A~~l-------------------------------------a~~~~~~~~~~~-~~~~~~iaG~~Tig~EI~eQl~~~ 259 (441)
T PRK02991 220 --GRKA-------------------------------------AESDPNCYFIDD-ENSRTLFLGYAVAGLRLKAQLAEQ 259 (441)
T ss_pred --HHHH-------------------------------------HHhcCCeEeCCC-CCchhHHHhHHHHHHHHHHHhhhc
Confidence 2221 111223454433 35577788999999999999841
Q ss_pred CC----CCCCEEEEecCCchhHHHHHHHHHhc-CCCCeEEEEeccCChhhHHHHHHhH------------HHHHHHHhcc
Q 012606 290 GR----KRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNL------------ISEFKRLFGF 352 (460)
Q Consensus 290 ~~----~~pD~vvv~vGtGgt~~Gl~~~~~~~-g~~~~vigVe~~g~~~~~~~~~~~l------------~~~~~~~i~~ 352 (460)
++ +.||+||+|+|+||+++|++++|+++ .++++|||||+++++..+.+...+. ...+++.++.
T Consensus 260 ~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~ 339 (441)
T PRK02991 260 GIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAV 339 (441)
T ss_pred cCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcC
Confidence 11 13789999999999999999999987 6889999999999866444322111 0122233322
Q ss_pred ccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhh-------cCC---C
Q 012606 353 LLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-------KLK---Q 422 (460)
Q Consensus 353 ~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-------~~~---~ 422 (460)
..++...+.+++++.++.+.|+|+|+.++|++|++++||++||+ +|+++|+++++.+. .+. +
T Consensus 340 -------~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS-~AaalAa~~~l~~~~~~~~~~~l~~~~~ 411 (441)
T PRK02991 340 -------GRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPS-ALAGMAGPVRVCASVAYLQRHGLSEQLK 411 (441)
T ss_pred -------CCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHH-HHHHHHHHHHHHhCHHHHHHcCCccccC
Confidence 12233456778889999999999999999999999999999996 78999999876542 122 5
Q ss_pred CCeEEEEecCCCcchhhHHHHHHHH
Q 012606 423 DADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 423 g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
+++||+|.|||+.-.......|+.+
T Consensus 412 ~~~vv~~~~gg~~~~~~~~~~~~~~ 436 (441)
T PRK02991 412 NATHLVWATGGSMVPEEEMEQYLAK 436 (441)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHh
Confidence 7899999999998878777777654
No 58
>PLN00011 cysteine synthase
Probab=100.00 E-value=5.1e-43 Score=354.66 Aligned_cols=285 Identities=17% Similarity=0.070 Sum_probs=210.6
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC-----CCeEEEeCCccc
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQS 152 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g-----~~~VVt~Gas~G 152 (460)
-++|||+++ ++++ +.. +++||+|+|++| | +||||+|++.+++..|++.| .++||+ +|+|
T Consensus 15 ~g~TPl~~l--~~l~-~~~---------g~~i~~K~E~~n-P-tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~--aSsG 78 (323)
T PLN00011 15 IGNTPMVYL--NNIV-DGC---------VARIAAKLEMME-P-CSSVKDRIAYSMIKDAEDKGLITPGKSTLIE--ATAG 78 (323)
T ss_pred hCCCceEEc--cccC-CCC---------CceEEEEecccC-C-ccccchHHHHHHHHHHHHcCCCCCCCcEEEE--eCCC
Confidence 399999999 8877 321 579999999998 7 89999999999999999988 578997 4789
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 153 Nhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
|||+|+|++|+.+|++|+||||...++ .+..+++.||| |+.++.. +.... ..+ .+++
T Consensus 79 N~g~alA~~a~~~G~~~~ivvp~~~~~---~k~~~i~~~GA~V~~~~~~-~~~~~-~~~-~a~~---------------- 136 (323)
T PLN00011 79 NTGIGLACIGAARGYKVILVMPSTMSL---ERRIILRALGAEVHLTDQS-IGLKG-MLE-KAEE---------------- 136 (323)
T ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEECCC-cChHH-HHH-HHHH----------------
Confidence 999999999999999999999998763 45667899998 9998863 32111 111 1111
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
+.+..++ ++++.+..||.. ..||.+++.||++|+ . ..||+||+|+|||||++|+
T Consensus 137 ---------------------l~~~~~~-~~~~~~~~n~~n~~~~~~t~~~EI~~q~--~-~~~D~iv~~vGtGGt~aGi 191 (323)
T PLN00011 137 ---------------------ILSKTPG-GYIPQQFENPANPEIHYRTTGPEIWRDS--A-GKVDILVAGVGTGGTATGV 191 (323)
T ss_pred ---------------------HHHhCCC-eEEeccccCCccHHHHHHHHHHHHHHhc--C-CCCCEEEEeCCchHHHHHH
Confidence 1222233 345555544432 237999999999996 3 2699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
+++|++++++++|||||++++....... ....+.+.++.+.. ...+.....++.+.|+|+|++++|+
T Consensus 192 ~~~lk~~~~~~kvigVe~~~~~~~~~~~---~~~~~~~gl~~~~~----------~~~~~~~~~d~~v~V~d~e~~~a~~ 258 (323)
T PLN00011 192 GKFLKEKNKDIKVCVVEPVESAVLSGGQ---PGPHLIQGIGSGII----------PFNLDLTIVDEIIQVTGEEAIETAK 258 (323)
T ss_pred HHHHHhhCCCCEEEEEecCCCcccCCCC---CCCCCCCCCCCCCC----------CcccChhhCCeEEEECHHHHHHHHH
Confidence 9999999999999999999875421110 00011111221111 1112334456788999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEe-cCCCcchhh
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLH-TGGTLGMFG 439 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~-TGG~~~~~~ 439 (460)
+|++++||++||+ +|+++++++++++....++++||+|+ +||+..+..
T Consensus 259 ~l~~~~Gi~~~~s-sga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~ 307 (323)
T PLN00011 259 LLALKEGLLVGIS-SGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLST 307 (323)
T ss_pred HHHHhcCCeEccc-HHHHHHHHHHHHHhccCCCCeEEEEECCCccccCCh
Confidence 9999999999996 78999999887654323577888888 678766543
No 59
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=7.3e-43 Score=361.18 Aligned_cols=304 Identities=13% Similarity=0.025 Sum_probs=209.3
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCC---eEEEeCCccchHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT---DLVTCGGCQSAHA 155 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~---~VVt~Gas~GNhg 155 (460)
|+|||+++ ++|+ +.. |.+||+|+|++| | +||||||.+.+++.+|.+.|.. ++|+. +|+||||
T Consensus 52 g~TPLv~~--~~l~-~~~---------g~~v~~KlE~~n-P-tGS~KdR~A~~~i~~a~~~g~~~~~g~Vve-aSSGN~g 116 (423)
T PLN02356 52 GNTPLIRI--NSLS-EAT---------GCEILGKCEFLN-P-GGSVKDRVAVKIIEEALESGQLFPGGVVTE-GSAGSTA 116 (423)
T ss_pred CCCceEEC--cccc-ccc---------CCEEEEEeccCC-C-CCCHHHHHHHHHHHHHHhCCccCCCCEEEE-eCCHHHH
Confidence 89999999 8887 432 679999999999 7 8999999999999999887753 34443 3789999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC------chhhHHH----HHHHHhhhhhcCCCCcc
Q 012606 156 TAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT------HYAHRIE----MLKSYANLVAGNNGDVV 224 (460)
Q Consensus 156 ~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~------~~~~~~~----~~~~~A~~la~~~g~~~ 224 (460)
+|+|++|+.+|++|+||||+..+.. +..+++.||| |+.|+.. .+..... ..++++++.+.+.+...
T Consensus 117 ~alA~~aa~~G~~~~ivvP~~~s~~---K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~ 193 (423)
T PLN02356 117 ISLATVAPAYGCKCHVVIPDDVAIE---KSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDG 193 (423)
T ss_pred HHHHHHHHHcCCcEEEEECCCCcHH---HHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999988754 3457899998 9988641 1211000 01112222222222222
Q ss_pred chhhhhHHHHHhhhhhhccccccccccccccc-------CCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCE
Q 012606 225 WCNEIFEASLTAQKSRASCLGQMDAHKGIDNC-------RKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIK 296 (460)
Q Consensus 225 w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~ 296 (460)
|.. .. -|. ...+..++ .++ ++++.+..||.. ..+++.+|.||++|+ + ..||+
T Consensus 194 ~~~--~~-~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~q~~n~~n~~ahg~gTg~EI~eQl--~-g~~D~ 253 (423)
T PLN02356 194 IHL--EK-TNG-------------CISEEEKENSLFSSSCTG-GFFADQFENLANFRAHYEGTGPEIWEQT--Q-GNLDA 253 (423)
T ss_pred ccc--cc-ccc-------------ccccccccccccccCCCC-cEecCccCCcchHHHHHhhHHHHHHHhc--C-CCCCE
Confidence 210 00 000 00000000 023 344567777654 223444699999996 3 26999
Q ss_pred EEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhh---------HHHHHHhH-H----HHHHHHhccccccCCcccc
Q 012606 297 FVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDG---------YKQQEKNL-I----SEFKRLFGFLLKKSSLNEV 362 (460)
Q Consensus 297 vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~---------~~~~~~~l-~----~~~~~~i~~~~~p~~~~~~ 362 (460)
||+|+|||||++|++++||+++|+++|+|||+.++... ..+...+. + +.+.+.++.+
T Consensus 254 vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~--------- 324 (423)
T PLN02356 254 FVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGIN--------- 324 (423)
T ss_pred EEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCC---------
Confidence 99999999999999999999999999999999886421 00100000 0 0111212211
Q ss_pred cchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC
Q 012606 363 DGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG 432 (460)
Q Consensus 363 ~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG 432 (460)
..+..+..+..++.+.|+|+|+++++++|++++|+++||+ +|+++++++++++. +.++++||+|+||
T Consensus 325 -~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~S-saa~laaa~~la~~-~~~g~~VV~Il~d 391 (423)
T PLN02356 325 -RLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSS-SAMNCVGAVRVAQS-LGPGHTIVTILCD 391 (423)
T ss_pred -CCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeEC-HHHHHHHHHHHHHH-hCCCCeEEEEECC
Confidence 1223455667889999999999999999999999999996 78999999988753 4568899999998
No 60
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=7.8e-43 Score=358.24 Aligned_cols=283 Identities=14% Similarity=0.072 Sum_probs=209.5
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC-----CCeEEEeCCccc
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQS 152 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g-----~~~VVt~Gas~G 152 (460)
-|+|||+++ ++++ ... |++||+|+|++| | +||||+|++.++|.+|++.| .++||+ +|+|
T Consensus 57 ig~TPl~~l--~~l~-~~~---------g~~I~~KlE~~n-P-tGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~--aSsG 120 (368)
T PLN02556 57 IGKTPLVYL--NKVT-EGC---------GAYIAAKQEMFQ-P-TSSIKDRPALAMIEDAEKKNLITPGKTTLIE--PTSG 120 (368)
T ss_pred cCCCccEEc--cccc-ccc---------CCEEEEEecccC-C-ccchHHHHHHHHHHHHHHcCCcCCCCCEEEE--eCCc
Confidence 399999999 8887 322 689999999998 7 89999999999999999886 367887 4789
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 153 Nhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
|||+|+|++|+.+|++|+||||+.++. .+..++++||| |+.++... ... ...+. |+
T Consensus 121 N~G~alA~~a~~~G~~~~ivvp~~~~~---~k~~~lr~~GA~Vi~~~~~~-~~~-~~~~~-a~----------------- 177 (368)
T PLN02556 121 NMGISLAFMAAMKGYKMILTMPSYTSL---ERRVTMRAFGAELVLTDPTK-GMG-GTVKK-AY----------------- 177 (368)
T ss_pred hHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCCC-Ccc-HHHHH-HH-----------------
Confidence 999999999999999999999998754 35668899998 99987521 100 11110 11
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHH-HHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
++.+..++.| +..++.||.... ||.+++.||++|+ + +.||+||+|+|||||++|+
T Consensus 178 --------------------~l~~~~~~~~-~~~q~~np~~~~~g~~ttg~EI~eq~--~-~~~D~vV~~vGtGGt~aGv 233 (368)
T PLN02556 178 --------------------ELLESTPDAF-MLQQFSNPANTQVHFETTGPEIWEDT--L-GQVDIFVMGIGSGGTVSGV 233 (368)
T ss_pred --------------------HHHHhcCCCC-ccCCCCCHHHHHHHHHHHHHHHHHhc--C-CCCCEEEEcCCcchHHHHH
Confidence 1112223333 345677898874 9999999999995 3 3699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
++++++.+++++|||||++++.... ...... ..+ ..++.+.. +. .+..+..++.+.|+|+|++++++
T Consensus 234 ~~~lk~~~p~~kVigVep~~~~~~~-~g~~~~-~~i-~g~g~~~~--------p~--~~~~~~~d~~v~Vsd~ea~~a~r 300 (368)
T PLN02556 234 GKYLKSKNPNVKIYGVEPAESNVLN-GGKPGP-HHI-TGNGVGFK--------PD--ILDMDVMEKVLEVSSEDAVNMAR 300 (368)
T ss_pred HHHHHHhCCCCEEEEEeeCCCcccc-CCCCCC-eee-eeccCCCC--------cc--ccchhhCCeEEEECHHHHHHHHH
Confidence 9999999999999999998864311 100000 000 11121111 11 13345677899999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcch
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGM 437 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~ 437 (460)
+|++++||++||+ +|+++++++++++....++++||+|+++ |...+
T Consensus 301 ~l~~~eGi~vg~s-sgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~ 347 (368)
T PLN02556 301 ELALKEGLMVGIS-SGANTVAALRLAKMPENKGKLIVTVHPSFGERYL 347 (368)
T ss_pred HHHHHcCCEEecC-HHHHHHHHHHHhhhccCCcCEEEEEECCCCcccC
Confidence 9999999999996 6777777777765433357889999987 54433
No 61
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.6e-42 Score=357.29 Aligned_cols=290 Identities=13% Similarity=0.022 Sum_probs=217.8
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC-----CeEEEeCCccc
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQS 152 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~-----~~VVt~Gas~G 152 (460)
.|+|||+++ ++++ +.. +++||+|+|.+| | +||||||.+.++|.++++.|. ++||++ |+|
T Consensus 121 iG~TPLv~l--~~l~-~~~---------g~~Iy~KlE~lN-P-tGSfKdR~A~~~l~~a~~~G~l~pG~~~VVea--SSG 184 (429)
T PLN03013 121 IGKTPMVYL--NSIA-KGC---------VANIAAKLEIME-P-CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP--TSG 184 (429)
T ss_pred CCCCCeEEC--cccc-ccc---------CCeEEEEeccCC-C-ccccHHHHHHHHHHHHHHcCCcCCCCcEEEEE--CCc
Confidence 389999999 8877 322 579999999999 7 899999999999999988885 558874 789
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCc-hhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012606 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (460)
Q Consensus 153 Nhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 230 (460)
|||+|+|++|+.+|++|+||||+..++. +..+++.||| |+.+++.. ++. ..+ .|+
T Consensus 185 N~G~ALA~~a~~~G~~~~VvvP~~~s~~---K~~~ira~GAeVi~v~~~~~~~~---a~~-~A~---------------- 241 (429)
T PLN03013 185 NTGIGLAFIAASRGYRLILTMPASMSME---RRVLLKAFGAELVLTDPAKGMTG---AVQ-KAE---------------- 241 (429)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCcHH---HHHHHHHcCCEEEEECCCCChHH---HHH-HHH----------------
Confidence 9999999999999999999999988754 4457899998 99997642 211 111 111
Q ss_pred HHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHH-HHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHH
Q 012606 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (460)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~G 309 (460)
++.+..++.| ++.+..||.... ||.+++.||++|+ + ..||+||+|+||||+++|
T Consensus 242 ---------------------ela~~~~g~~-~~~qy~Np~n~~ah~~ttg~EI~eq~--~-~~~D~vV~~vGtGGtisG 296 (429)
T PLN03013 242 ---------------------EILKNTPDAY-MLQQFDNPANPKIHYETTGPEIWDDT--K-GKVDIFVAGIGTGGTITG 296 (429)
T ss_pred ---------------------HHHhhcCCeE-eCCCCCCHHHHHHHHHHHHHHHHHhc--C-CCCCEEEEeCCccHHHHH
Confidence 1222223444 456778888764 9999999999996 3 369999999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHH
Q 012606 310 LGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (460)
Q Consensus 310 l~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (460)
+++++++..|+++|||||++++.... .... .....+.++.+.+ ...+.....++.+.|+|+|+++++
T Consensus 297 iar~lKe~~P~vkVigVep~gs~~l~-~g~~--~~~~i~Glg~~~i----------p~~~~~~~vD~vv~VsD~ea~~a~ 363 (429)
T PLN03013 297 VGRFIKEKNPKTQVIGVEPTESDILS-GGKP--GPHKIQGIGAGFI----------PKNLDQKIMDEVIAISSEEAIETA 363 (429)
T ss_pred HHHHHHhhCCCCEEEEEEeCCCchhh-CCCC--CCcccCcccCCcC----------CHhHHHHhccEEEEECHHHHHHHH
Confidence 99999999999999999999975421 1100 0000112232211 223455677889999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHHhccc
Q 012606 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSL 451 (460)
Q Consensus 390 r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~~~~~ 451 (460)
++|++++||++||+ +|+++++++++++....++++||+++. ++..+||.+..+.+
T Consensus 364 r~La~~eGi~vG~S-SGAalaAalkla~~~~~~g~~IVv~i~------~d~g~~Y~~~~~~~ 418 (429)
T PLN03013 364 KQLALKEGLMVGIS-SGAAAAAAIKVAKRPENAGKLIAVSLF------ASGRDIYTPRCSSL 418 (429)
T ss_pred HHHHHHcCCEEecC-HHHHHHHHHHHhhhccCCCCEEEEEEc------CCCchhchhhhhcC
Confidence 99999999999996 789999999887543345777755541 34467888886444
No 62
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.1e-42 Score=361.26 Aligned_cols=299 Identities=12% Similarity=0.018 Sum_probs=217.0
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCC-ceEEEEeCCCCCCCCchhHHHhHHhhHHHHH--hcCCC-------------
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLE--DHIVT------------- 142 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~--~~g~~------------- 142 (460)
++|||+++ ++|+ ..+ | .+||+|+|++++| +||||+|+..+.+..+. +.+.+
T Consensus 43 ~~TPL~~~--~~l~-~~~---------G~~~v~~K~E~~q~p-tgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 43 APTPLVAL--PDLA-AEL---------GVGSILVKDESYRFG-LNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred CCCCCcch--HHHH-HHh---------CCCcEEEecccCcCC-CCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 79999999 8887 444 5 6999999998547 89999999888877754 33321
Q ss_pred --------eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHh
Q 012606 143 --------DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYA 213 (460)
Q Consensus 143 --------~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A 213 (460)
+||+ +|+||||+|+|++|+.+|++|+||||...++. +...++.||| |+.|+. .+++.....
T Consensus 110 ~~~~~~~~~vv~--aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~---k~~~i~~~GA~Vi~v~~-~~~~~~~~a---- 179 (399)
T PRK08206 110 VREKLGDITFAT--ATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEE---RVDAIRALGAECIITDG-NYDDSVRLA---- 179 (399)
T ss_pred HHHhccCCEEEE--eCCcHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCC-CHHHHHHHH----
Confidence 3554 58899999999999999999999999987643 3446899998 999986 455432221
Q ss_pred hhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecC----CCc--chHHHHHHHHHHHHHHHhH
Q 012606 214 NLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDH 287 (460)
Q Consensus 214 ~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~----g~~--np~~~~G~~t~~~Ei~eq~ 287 (460)
.+++. .. ..|+++. +.. +|...+||.|++.||++|+
T Consensus 180 ~~~~~-------------------------------------~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl 221 (399)
T PRK08206 180 AQEAQ-------------------------------------EN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQL 221 (399)
T ss_pred HHHHH-------------------------------------Hc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHH
Confidence 11111 11 1233321 222 3777899999999999998
Q ss_pred HcCCCCCCEEEEecCCchhHHHHHHHHHhcC--CCCeEEEEeccCChhhHHHHHHhH---HHHHHHHhccccccCCcccc
Q 012606 288 LLGRKRAIKFVVDAGTGTTAVGLGLGAICLG--LPWEVTAIALVDTIDGYKQQEKNL---ISEFKRLFGFLLKKSSLNEV 362 (460)
Q Consensus 288 ~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g--~~~~vigVe~~g~~~~~~~~~~~l---~~~~~~~i~~~~~p~~~~~~ 362 (460)
...+..||+||+|+|+|||++|++++|+++. +.++|||||++++...+.+...+. +++...+++.++ ....+
T Consensus 222 ~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl---~~~~~ 298 (399)
T PRK08206 222 KEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGL---ACGEP 298 (399)
T ss_pred HhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccC---CCCCc
Confidence 4111259999999999999999999999873 478999999999876443322110 111001222222 11122
Q ss_pred cchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH----HhCCcccccchHHHHHHHHHHhh----------hcCCCCCeEEE
Q 012606 363 DGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ----LTGILVDPVYTLAAWEMATLLSD----------EKLKQDADVVM 428 (460)
Q Consensus 363 ~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~----~eGI~vEP~ysgaa~Aal~~~~~----------~~~~~g~~Vv~ 428 (460)
+...+.++++..++.+.|+|+|++++|++|++ ++||++||+ +|+++||++++.. ..+.++++||+
T Consensus 299 ~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~veps-gAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~ 377 (399)
T PRK08206 299 NPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGES-GAVGLGALAALMTDPDYQELREKLGLDEDSRVLL 377 (399)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecch-HHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEE
Confidence 23456678888999999999999999999996 789999996 7899999986541 23456899999
Q ss_pred EecCCCcchhhHHH
Q 012606 429 LHTGGTLGMFGLAQ 442 (460)
Q Consensus 429 i~TGG~~~~~~~~~ 442 (460)
|+||||.+...+.+
T Consensus 378 iltgG~~d~~~~~~ 391 (399)
T PRK08206 378 ISTEGDTDPDRYRE 391 (399)
T ss_pred EECCCCCCHHHHHH
Confidence 99999999766443
No 63
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.8e-42 Score=345.19 Aligned_cols=267 Identities=14% Similarity=0.107 Sum_probs=203.6
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
|+|||+++ ++|+ +.. |.+||+|+|++| | +||||+|.+.+++.++++.|. ++||+ +|+|||
T Consensus 11 g~TPl~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~--aSsGN~ 74 (296)
T PRK11761 11 GNTPLVKL--QRLP-PDR---------GNTILAKLEGNN-P-AGSVKDRPALSMIVQAEKRGEIKPGDTLIE--ATSGNT 74 (296)
T ss_pred CCCceEec--cccc-cCC---------CCEEEEEEcccC-C-CCCchhHHHHHHHHHHHHcCCCCCCCEEEE--eCCChH
Confidence 89999999 8887 332 679999999998 7 899999999999999999887 77988 478999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+.+|++|+||||+..++ .+..+++.||| |+.++.. .++...+ .|++
T Consensus 75 g~alA~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~----~a~~----------------- 130 (296)
T PRK11761 75 GIALAMIAAIKGYRMKLIMPENMSQ---ERRAAMRAYGAELILVPKEQGMEGARD----LALQ----------------- 130 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHH----HHHH-----------------
Confidence 9999999999999999999998764 35567899998 9999862 2332111 1221
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+.++... +++ .+..|+.. ..||.+++.||++|+ + ..+|+||+|+||||+++|++
T Consensus 131 --------------------l~~~~~~-~~~-~~~~n~~~~~~~~~t~~~Ei~eq~--~-~~~d~iv~~vG~Gg~~~Gi~ 185 (296)
T PRK11761 131 --------------------MQAEGEG-KVL-DQFANPDNPLAHYETTGPEIWRQT--E-GRITHFVSSMGTTGTIMGVS 185 (296)
T ss_pred --------------------HHhccCC-Eec-CCCCChhhHHHHhhchHHHHHHhc--C-CCCCEEEecCCcHHHHHHHH
Confidence 1122222 222 33445543 236899999999996 2 25899999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~ 391 (460)
++|++.++.++|||||++++.... ++ .. .+... . .. .+.....++.+.|+|+|+++++++
T Consensus 186 ~~lk~~~~~~kvigVep~~~~~i~-----g~--------~~--~~~~~--~-~~--~~~~~~vd~~v~V~d~e~~~a~~~ 245 (296)
T PRK11761 186 RYLKEQNPAVQIVGLQPEEGSSIP-----GI--------RR--WPEEY--L-PK--IFDASRVDRVLDVSQQEAENTMRR 245 (296)
T ss_pred HHHHHhCCCCEEEEEecCCCCcCc-----CC--------CC--CCCCc--C-Cc--ccChhhCCEEEEECHHHHHHHHHH
Confidence 999999999999999998754311 00 10 00000 0 01 112445677999999999999999
Q ss_pred HHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 392 La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
|++++||++||+ +|+++++++++.++ .++++||+|+|++
T Consensus 246 l~~~~gi~ve~s-sga~laaa~~~~~~--~~~~~vV~v~~d~ 284 (296)
T PRK11761 246 LAREEGIFCGVS-SGGAVAAALRIARE--NPNAVIVAIICDR 284 (296)
T ss_pred HHHHhCceEchh-HHHHHHHHHHHHHH--CCCCeEEEEECCC
Confidence 999999999996 78999999987654 3578999999884
No 64
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=6e-42 Score=341.96 Aligned_cols=267 Identities=18% Similarity=0.125 Sum_probs=203.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
|+|||+++ ++++ +.. |.+||+|+|++| | +||||+|.+.+++..|++.|. ++||++ |+|||
T Consensus 7 g~TPl~~~--~~l~-~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~a--SsGN~ 70 (290)
T TIGR01138 7 GNTPLVRL--QRMG-PEN---------GSEVWLKLEGNN-P-AGSVKDRPALSMIVEAEKRGEIKPGDVLIEA--TSGNT 70 (290)
T ss_pred CCCceEEc--cccc-cCC---------CCeEEEEEccCC-C-CccHHHHHHHHHHHHHHHcCCCCCCCEEEEE--CCChH
Confidence 89999999 8887 432 679999999998 7 899999999999999999887 778874 78999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+++|++|+||||+..++. +..+++.||| |+.|+.. .++...+ .+++++
T Consensus 71 g~alA~~a~~~G~~~~i~~p~~~~~~---k~~~~~~~GA~v~~v~~~~~~~~~~~----~a~~l~--------------- 128 (290)
T TIGR01138 71 GIALAMIAALKGYRMKLLMPDNMSQE---RKAAMRAYGAELILVTKEEGMEGARD----LALELA--------------- 128 (290)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCHH---HHHHHHHcCCEEEEeCCCCChHHHHH----HHHHHH---------------
Confidence 99999999999999999999987643 4557899998 9999863 2332211 122221
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHH-HHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+..+..|+ .+..|+... .||.+++.||++|+ + ..||+||+|+|||||++|++
T Consensus 129 ----------------------~~~~~~~~--~~~~~~~~~~~~~~t~~~Ei~~q~--~-~~~d~iv~~vG~Gg~~~Gv~ 181 (290)
T TIGR01138 129 ----------------------NRGEGKLL--DQFNNPDNPYAHYTSTGPEIWQQT--G-GRITHFVSSMGTTGTIMGVS 181 (290)
T ss_pred ----------------------HhCCCCCC--CccCCcccHHHHhHhHHHHHHHHc--C-CCCCEEEECCCchHHHHHHH
Confidence 12222332 233333332 25889999999996 3 26899999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~ 391 (460)
.+|++++++++||||||.++.... ++ ..++.+..+ .. +.....++.+.|+|+|+++++++
T Consensus 182 ~~lk~~~~~~kvi~Vep~~~~~~~-----g~-----~~~~~~~~~--------~~--~~~~~~d~~v~V~d~e~~~a~~~ 241 (290)
T TIGR01138 182 RFLKEQNPPVQIVGLQPEEGSSIP-----GI-----RRWPTEYLP--------GI--FDASLVDRVLDIHQRDAENTMRE 241 (290)
T ss_pred HHHHHhCCCCEEEEEeCCCCCCcc-----CC-----CCCCCCcCC--------cc--cChhhCcEEEEECHHHHHHHHHH
Confidence 999999999999999998864310 11 111221111 11 12344667999999999999999
Q ss_pred HHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 392 La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
|++++|+++||+ +|++++++++++++ + ++++||+|+|+.
T Consensus 242 l~~~~gi~~g~s-sga~laa~~~~~~~-~-~~~~vv~v~~d~ 280 (290)
T TIGR01138 242 LAVREGIFCGVS-SGGAVAAALRLARE-L-PDAVVVAIICDR 280 (290)
T ss_pred HHHHhCceEcHh-HHHHHHHHHHHHHH-C-CCCeEEEEECCC
Confidence 999999999996 78999999987654 4 468999999774
No 65
>PLN02565 cysteine synthase
Probab=100.00 E-value=5.2e-42 Score=346.89 Aligned_cols=280 Identities=14% Similarity=0.059 Sum_probs=207.6
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC-----CeEEEeCCccch
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~-----~~VVt~Gas~GN 153 (460)
|+|||+++ ++++ ... +++||+|+|.+| | +||||||.+.+++..+.+.|. ++||++ |+||
T Consensus 14 g~TPLv~l--~~l~-~~~---------~~~i~~K~E~~n-P-tGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~a--SsGN 77 (322)
T PLN02565 14 GKTPLVYL--NNVV-DGC---------VARIAAKLEMME-P-CSSVKDRIGYSMITDAEEKGLIKPGESVLIEP--TSGN 77 (322)
T ss_pred CCCceEEc--cccC-CCC---------CceEEEEecccC-C-ccchHHHHHHHHHHHHHHcCCCCCCCcEEEEE--CCCh
Confidence 99999998 7775 211 479999999999 7 899999999999999988775 458874 7799
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCc-hhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 154 hg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
||+|+|++|+.+|++|+||||+..++. +..+++.||| |+.+++.. ++.+.+ .|++
T Consensus 78 ~g~alA~~a~~~G~~~~ivvp~~~~~~---k~~~i~~~GA~V~~~~~~~~~~~~~~----~a~~---------------- 134 (322)
T PLN02565 78 TGIGLAFMAAAKGYKLIITMPASMSLE---RRIILLAFGAELVLTDPAKGMKGAVQ----KAEE---------------- 134 (322)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCcHH---HHHHHHHcCCEEEEeCCCCCcHHHHH----HHHH----------------
Confidence 999999999999999999999988654 4557899998 99887631 222111 1222
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
+.++.++.|++ .+..||.. ..||+++++||++|+ + ..||+||+|+||||+++|+
T Consensus 135 ---------------------l~~~~~~~~~~-~q~~n~~n~~~~~~t~a~Ei~~q~--~-~~~d~vv~~vG~GG~l~Gi 189 (322)
T PLN02565 135 ---------------------ILAKTPNSYIL-QQFENPANPKIHYETTGPEIWKGT--G-GKVDAFVSGIGTGGTITGA 189 (322)
T ss_pred ---------------------HHHhCCCcEee-cccCCHhHHHHHHHHHHHHHHHhc--C-CCCCEEEEcCCchHHHHHH
Confidence 12222234444 34455533 347999999999996 3 2699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
+++|++.++.++|||||+++++...... . .....+.++.+..| ..+ ..+..++.+.|+|+|++++++
T Consensus 190 ~~~lk~~~p~~kvi~Vep~~s~~~~~g~-~--~~~~~~glg~~~~~--------~~~--~~~~vd~~v~V~d~ea~~a~~ 256 (322)
T PLN02565 190 GKYLKEQNPDIKLYGVEPVESAVLSGGK-P--GPHKIQGIGAGFIP--------GVL--DVDLLDEVVQVSSDEAIETAK 256 (322)
T ss_pred HHHHHHhCCCCEEEEEecCCCccccCCC-C--CCccCCCCCCCCCC--------CcC--CHhHCCEEEEECHHHHHHHHH
Confidence 9999999999999999999875431100 0 00011222221111 111 124556799999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcc
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLG 436 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~ 436 (460)
+|++++|+++||+ ||++++++++++++...++++||+|+|+ |...
T Consensus 257 ~l~~~~gi~vg~s-sga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky 302 (322)
T PLN02565 257 LLALKEGLLVGIS-SGAAAAAAIKIAKRPENAGKLIVVIFPSFGERY 302 (322)
T ss_pred HHHHHhCcEEecc-HHHHHHHHHHHHHhcCCCCCeEEEEECCCcccc
Confidence 9999999999996 7899999999886543457899999987 4343
No 66
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=3.2e-42 Score=363.81 Aligned_cols=283 Identities=12% Similarity=0.049 Sum_probs=211.1
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
|+|||+++ ++++ +.+ +++||+|+|++| | +||||+|++.+++.+|.+.|. ++||++ |+|||
T Consensus 10 ~~TPl~~~--~~l~-~~~---------~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~--ssGN~ 73 (454)
T TIGR01137 10 GNTPLVRL--NKVS-KGI---------KCELLAKCEFFN-P-GGSVKDRIALRMIEDAEASGRLKPGDTIIEP--TSGNT 73 (454)
T ss_pred CCCceEEc--cccC-CCC---------CceEEEEEhhcC-C-CcchHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHH
Confidence 89999999 8888 432 579999999998 7 899999999999999999887 779885 78999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+++|++|+||||+..++. +..+++.||| |+.++.. .++..+... ..|++
T Consensus 74 g~alA~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~v~~~~~~~~~~~~~~~~-~~a~~----------------- 132 (454)
T TIGR01137 74 GIGLALVAAIKGYKCIIVLPEKMSNE---KVDVLKALGAEIVRTPTAAAFDSPESHI-GVAKR----------------- 132 (454)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCcCHH---HHHHHHHCCCEEEEcCCccCCCchHHHH-HHHHH-----------------
Confidence 99999999999999999999987643 5567899998 9999753 133221111 11111
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHH-HHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+.++.++ ++++.++.||... .||.+++.||++|+ ++ .||+||+|+|||||++|++
T Consensus 133 --------------------l~~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q~--~~-~~d~vv~~vG~Gg~~~G~~ 188 (454)
T TIGR01137 133 --------------------LVREIPG-AHILDQYNNPSNPLAHYDGTGPEILEQC--EG-KLDMFVAGAGTGGTITGIA 188 (454)
T ss_pred --------------------HHHhCCC-cEecccCCChhhHHHHHHhhHHHHHHHh--CC-CCCEEEEecCchHHHHHHH
Confidence 1122223 3455665566543 58999999999997 32 6999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHHH--hHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQEK--NLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~~--~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (460)
.+|++..+.++|||||+++++........ .......+.++... ....+.....++.+.|+|+|+++++
T Consensus 189 ~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~d~~~~V~~~e~~~a~ 258 (454)
T TIGR01137 189 RYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDF----------IPTVLDRKVVDEWIKTDDKESFKMA 258 (454)
T ss_pred HHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCC----------CCCcCCchhCCeEEEECHHHHHHHH
Confidence 99999999999999999987521100000 00000001111100 0112234567788999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 390 r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
++|++++|+++||+ ||++++|++++++..+.++++||+|+|++
T Consensus 259 ~~l~~~~gi~~~~s-sg~~~aa~~~~~~~~~~~~~~vv~~~~d~ 301 (454)
T TIGR01137 259 RRLIKEEGLLVGGS-SGSAVVAALKAAEDELTEDQVIVVLLPDS 301 (454)
T ss_pred HHHHHHhCccCcHH-HHHHHHHHHHHHHhhcCCCCEEEEEECCC
Confidence 99999999999997 89999999988754456688999999874
No 67
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.6e-41 Score=353.36 Aligned_cols=323 Identities=14% Similarity=0.065 Sum_probs=216.5
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
++++|||+++ ++|+ +.+|. +++||+|+|++| | +||||+|.+.+++..+++.|.+++|+. .|+||||+
T Consensus 65 ~g~pTPL~r~--~~L~-~~lg~-------~~~Iy~K~E~~n-P-tGS~K~R~A~~~~~~a~~~G~~~~vte-tssGN~G~ 131 (419)
T TIGR01415 65 IGRPTPLIRA--KGLE-ELLGT-------PARIYYKYESVS-P-TGSHKINTAIAQAYYAKIEGAKRLVTE-TGAGQWGS 131 (419)
T ss_pred cCCCCCeEEc--cchh-hhhCC-------CceEEEEECCCC-C-CCCcHHHHHHHHHHHHHHcCCCeEEEe-cCchHHHH
Confidence 4579999999 9988 55532 379999999999 7 899999999999999999999999974 24599999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
|+|++|+.+|++|+||||...+..+..+..+|++||| |+.++.. +++..+.. ...-.+..|...|.
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~-~~~~~r~~---~~~~p~~~gsl~~a--------- 198 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE-FTEFGREV---LKEDPDHPGSLGIA--------- 198 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc-hhhHHHHh---hhcccccccchHHH---------
Confidence 9999999999999999998554333334567899998 9999864 44311100 00000000111110
Q ss_pred hhhhhhccccccccccccccc-CCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNC-RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~-~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
++.+.++... ....|+.+ +..|+. ..|+.++++||++|+...+..||+||+|+|||||++|++.+|
T Consensus 199 -----------i~~a~e~a~~~~~~~y~~~-~~~n~~-~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f 265 (419)
T TIGR01415 199 -----------ISEAIEYALSDEDTKYSLG-SVLNHV-LLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPF 265 (419)
T ss_pred -----------HHHHHHHHHhCCCCEEEeC-CCCcHH-HHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHH
Confidence 0111122222 23456543 334443 347778999999998521235999999999999999999998
Q ss_pred Hh---cC-CCCeEEEEeccCChhhHHHHHH-------hHHHH-HHHHhccccccCCc-------ccccchhhHHhhhcCC
Q 012606 315 IC---LG-LPWEVTAIALVDTIDGYKQQEK-------NLISE-FKRLFGFLLKKSSL-------NEVDGEIVHWVERCRP 375 (460)
Q Consensus 315 ~~---~g-~~~~vigVe~~g~~~~~~~~~~-------~l~~~-~~~~i~~~~~p~~~-------~~~~~~~~~l~~~~~~ 375 (460)
.+ .| ++++|||||+++++........ .+... -..++|.+++|... ..+.+....+.++...
T Consensus 266 ~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~ 345 (419)
T TIGR01415 266 VADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIV 345 (419)
T ss_pred HHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCce
Confidence 43 24 4799999999987654332110 00000 00112322222111 1111112223344444
Q ss_pred CeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcC--CCCCeEEEEecC-CCcchhh
Q 012606 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKL--KQDADVVMLHTG-GTLGMFG 439 (460)
Q Consensus 376 ~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~--~~g~~Vv~i~TG-G~~~~~~ 439 (460)
+.+.|+|+|+++|+++|++++||++||+ ||++++++++.+++.. .++++||+++|| |+.|+..
T Consensus 346 ~~~~V~d~e~~~a~r~la~~eGi~~eps-sa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~~ 411 (419)
T TIGR01415 346 EARAYDQEEAFEAAVIFAKTEGIVPAPE-SAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLKA 411 (419)
T ss_pred EEEEECHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHHH
Confidence 5788999999999999999999999997 8999999998775432 223367899999 9999665
No 68
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=8.8e-42 Score=353.60 Aligned_cols=322 Identities=14% Similarity=0.127 Sum_probs=231.6
Q ss_pred CceeEeeecHHHHHHHHhhhhhhhcCCCcchhhhhcccc----ccccCCCCCcccccCCCCCcccCCcccccCCCc-eEE
Q 012606 36 QGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTT----TEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-CFY 110 (460)
Q Consensus 36 ~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~-~l~ 110 (460)
.|++++.|+.+... +. ....+|++..++| ...+|.|||++. ++|+ +.+ |. +||
T Consensus 24 ~g~l~~~y~~~~~~--~~--------~~~~~wry~~~lP~~~~~~~~g~tpl~~~--~~L~-~~l---------G~~~v~ 81 (398)
T TIGR03844 24 CGLLRAEYAERQLT--LR--------DLPGIFRYYDWLPVTGHLRTRGGPVTYKS--EGLA-REL---------GLSDLY 81 (398)
T ss_pred CCceEEeecccccc--cc--------cCCchhhhHhhCCCCCCCCCCCCCceeeh--HHHH-HHh---------CCCeEE
Confidence 48999999865221 10 0134555544444 335678999998 8887 444 45 899
Q ss_pred E-------EeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchh
Q 012606 111 V-------VRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTG 183 (460)
Q Consensus 111 l-------KrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~ 183 (460)
+ |+|++| | +||||||.+.++|..+.+.|.+.||+. |+||||+|+|++|+++|++|+||||...+. + .
T Consensus 82 ~K~e~~~~K~E~~n-p-TGSFKdRga~~~i~~a~~~g~~~Vv~a--SsGN~g~alA~~aa~~Gi~~~I~vP~~~~~-~-~ 155 (398)
T TIGR03844 82 ITFSGYWPERGAFM-R-TCSFKELEALPTMQRLKERGGKTLVVA--SAGNTGRAFAEVSAITGQPVILVVPKSSAD-R-L 155 (398)
T ss_pred EEecCcccchhccC-C-ccccHHHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHHHHcCCcEEEEECCChHH-H-H
Confidence 9 666688 7 999999999999999999999999884 789999999999999999999999987542 1 2
Q ss_pred hhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEE
Q 012606 184 YNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLI 262 (460)
Q Consensus 184 ~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ 262 (460)
+ ..++.+|+ |+.+++ .|++..+.. +++ ++.. + ++
T Consensus 156 ~-~~~~~~ga~vv~v~g-~~d~a~~~a----~~~-------------------------------------a~~~-g-~~ 190 (398)
T TIGR03844 156 W-TTEPASSVLLVTVDG-DYTDAIALA----DRI-------------------------------------ATLP-G-FV 190 (398)
T ss_pred H-HHhhCCcEEEEECCC-CHHHHHHHH----HHH-------------------------------------HHhC-C-cc
Confidence 2 22477888 888875 466533221 111 1111 2 22
Q ss_pred ecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhc---C----CCCeEEEEeccCChhhH
Q 012606 263 VNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL---G----LPWEVTAIALVDTIDGY 335 (460)
Q Consensus 263 ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~---g----~~~~vigVe~~g~~~~~ 335 (460)
.+.+..||...+|++|+++||+||+ + ..||+||+|+|+|+...|++++|+++ | .-+++++||++++.+..
T Consensus 191 ~~~~~~~p~~ieG~~Ti~~Ei~eql--~-~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 191 PEGGARNVARRDGMGTVMLDAAVTI--G-SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred ccCCCCCHHHHhhHHHHHHHHHHHc--C-CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 3344458999999999999999996 3 35999999999999999999999873 2 34799999999987655
Q ss_pred HHHHHhH--H------H----HHHHHhcccc-ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccc
Q 012606 336 KQQEKNL--I------S----EFKRLFGFLL-KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDP 402 (460)
Q Consensus 336 ~~~~~~l--~------~----~~~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP 402 (460)
.+...+. . . .+.+++.+++ ++.+........+..++++.+..+.|+|+||.+|+++|++++||++||
T Consensus 268 ~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEp 347 (398)
T TIGR03844 268 NAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILP 347 (398)
T ss_pred HHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccc
Confidence 4432211 0 0 0012233222 111110001123677899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhh-cCCCCCeEEEEecCCC
Q 012606 403 VYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT 434 (460)
Q Consensus 403 ~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~ 434 (460)
+ +|+++||++++.+. .+.++++||+|+||++
T Consensus 348 a-~A~alAal~k~~~~g~i~~~~~Vv~vlTG~g 379 (398)
T TIGR03844 348 A-AAVAVAALVKAVESGFIGPDDDILLNITGGG 379 (398)
T ss_pred c-HHHHHHHHHHHHHhCCCCCCCeEEEEECCcc
Confidence 7 78999999998754 3557899999999964
No 69
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=2.2e-41 Score=348.46 Aligned_cols=298 Identities=13% Similarity=0.057 Sum_probs=219.2
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCC-ceEEEEeCCCCCCCCchhHHHhHHhhHHHHHh-------------------
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLED------------------- 138 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~------------------- 138 (460)
.+|||+++ ++|+ +.+ | .+||+|+|++|+| +||||+|++.+.+..+..
T Consensus 21 ~~TPL~~~--~~l~-~~~---------g~~~v~~K~E~~~~~-tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (376)
T TIGR01747 21 RPTPLCAL--DHLA-NLL---------GLKKILVKDESKRFG-LNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDA 87 (376)
T ss_pred CCCCCcch--HHHH-HHh---------CCCcEEEeeCCCCCC-CCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhH
Confidence 68999999 8887 544 5 5899999999866 899999999888877633
Q ss_pred ----cCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHh
Q 012606 139 ----HIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYA 213 (460)
Q Consensus 139 ----~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A 213 (460)
.|.++||+. |+||||+|+|++|+.+|++|+||||+..++. +..+++.||| |+.|++ .|++..+..
T Consensus 88 ~~~~~~~~~vv~a--SsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~---k~~~i~~~GAeVi~v~~-~~~~a~~~a---- 157 (376)
T TIGR01747 88 IGEKMGQATFATA--TDGNHGRGVAWAAQQLGQKAVVYMPKGSAQE---RVENILNLGAECTITDM-NYDDTVRLA---- 157 (376)
T ss_pred HHhhcCCCEEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHHH----
Confidence 245788874 7899999999999999999999999987643 4456899998 999986 466433222
Q ss_pred hhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecC----C--CcchHHHHHHHHHHHHHHHhH
Q 012606 214 NLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----G--AGDAVALLGVFRLLQYLSQDH 287 (460)
Q Consensus 214 ~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~----g--~~np~~~~G~~t~~~Ei~eq~ 287 (460)
++++.+ . +.|+++. + ..+|...+||.|++.||++|+
T Consensus 158 ~~~~~~-------------------------------------~-g~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl 199 (376)
T TIGR01747 158 MQMAQQ-------------------------------------H-GWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQL 199 (376)
T ss_pred HHHHHh-------------------------------------c-CcEEeccccccccccCCchHHHHHHHHHHHHHHHh
Confidence 222211 1 1233331 1 234667899999999999998
Q ss_pred H-cCCCCCCEEEEecCCchhHHHHHHHHHhcC-C-CCeEEEEeccCChhhHHHHHH--hHHHHH---HHHhccccccCCc
Q 012606 288 L-LGRKRAIKFVVDAGTGTTAVGLGLGAICLG-L-PWEVTAIALVDTIDGYKQQEK--NLISEF---KRLFGFLLKKSSL 359 (460)
Q Consensus 288 ~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g-~-~~~vigVe~~g~~~~~~~~~~--~l~~~~---~~~i~~~~~p~~~ 359 (460)
. .+|..||+||+|+|+||+++|++.+|++.. + .++||+||++++++.+.+... +....+ ..++.+++ ..
T Consensus 200 ~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl---~~ 276 (376)
T TIGR01747 200 REMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGL---AC 276 (376)
T ss_pred hccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCcccccccc---cc
Confidence 4 223479999999999999999999997653 3 379999999998876554322 110000 01233222 12
Q ss_pred ccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHh----CCcccccchHHHHHHHHHHhh---------h-cCCCCCe
Q 012606 360 NEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT----GILVDPVYTLAAWEMATLLSD---------E-KLKQDAD 425 (460)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~e----GI~vEP~ysgaa~Aal~~~~~---------~-~~~~g~~ 425 (460)
..++...+.+++++.+..+.|+|+|+.+|+++|++.. ++++||+ +++++|++...+. + .+.++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epa-ga~~la~l~~~~~~~~~~~~~~~~~~~~~~~ 355 (376)
T TIGR01747 277 GEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGES-GAVGLGLLAAVMYHPQYQSLMEKLQLDKDAV 355 (376)
T ss_pred CCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCc-hHHHHHHHHHHHhCchHHHHHHHcCCCCCCE
Confidence 2233456788999999999999999999999999855 5999996 6788887774332 1 2455799
Q ss_pred EEEEecCCCcchhhHH
Q 012606 426 VVMLHTGGTLGMFGLA 441 (460)
Q Consensus 426 Vv~i~TGG~~~~~~~~ 441 (460)
||+|+||||.+...+.
T Consensus 356 vvvi~t~gn~d~~~~~ 371 (376)
T TIGR01747 356 VLVISTEGDTDPDHYR 371 (376)
T ss_pred EEEEeCCCCCCHHHHH
Confidence 9999999999976643
No 70
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.2e-41 Score=352.67 Aligned_cols=310 Identities=15% Similarity=0.079 Sum_probs=221.5
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHH-----HHhcCC----------
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV---------- 141 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~-----a~~~g~---------- 141 (460)
..++|||+++ ++++ +.+|...-... +.+||+|+|++| |.+||||+|.+.++|.. |++.|.
T Consensus 67 ~~~~TPL~~~--~~ls-~~~~~~~~~~~-~~~v~lKlE~~n-P~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l 141 (431)
T TIGR02035 67 GIIESPLVEI--FNMQ-KELEKKYQQEI-PGRLLLKMDSHL-PISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSIL 141 (431)
T ss_pred CccCCCccch--HHHH-HHhhhcccCCc-CceEEEEecccC-CccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhh
Confidence 5589999999 8887 43210000011 569999999999 76799999999998864 556665
Q ss_pred -----------CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHH
Q 012606 142 -----------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEML 209 (460)
Q Consensus 142 -----------~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~ 209 (460)
.+||+ +|+||||+|+|++|+.+|++|+||||+..|.. +..+++.||| |+.++. +|++..+.
T Consensus 142 ~e~~~~~~~~~~~Vv~--aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~---K~~~ir~~GAeVv~~~~-~~~~a~~~- 214 (431)
T TIGR02035 142 AEKKFKDFFSRYSIAV--GSTGNLGLSIGIISAALGFQVTVHMSADAKQW---KKDKLRSKGVTVVEYES-DYGVAVEE- 214 (431)
T ss_pred cchhhhhcccCceEEE--ECccHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHH-
Confidence 36776 37899999999999999999999999988754 4457899998 999986 46643221
Q ss_pred HHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcc-hHHHHHHHHHHHHHHHhHH
Q 012606 210 KSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD-AVALLGVFRLLQYLSQDHL 288 (460)
Q Consensus 210 ~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n-p~~~~G~~t~~~Ei~eq~~ 288 (460)
|+++ ++..+..|++.. .| +....||.+++.||++|+.
T Consensus 215 ---A~~l-------------------------------------a~~~~~~~~~d~--~n~~n~~aG~~T~g~EI~eQl~ 252 (431)
T TIGR02035 215 ---GRKN-------------------------------------ADADPMCYFVDD--ENSRNLFLGYAVAASRLKKQFD 252 (431)
T ss_pred ---HHHH-------------------------------------HHhcCCeEECCC--CCcccHHhhHHHHHHHHHHhhh
Confidence 2222 122223444432 33 2335799999999999983
Q ss_pred c-C----CCCCCEEEEecCCchhHHHHHHHHHhc-CCCCeEEEEeccCChhhHHHHHHhH-----HHHH---HHHhcccc
Q 012606 289 L-G----RKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNL-----ISEF---KRLFGFLL 354 (460)
Q Consensus 289 ~-~----~~~pD~vvv~vGtGgt~~Gl~~~~~~~-g~~~~vigVe~~g~~~~~~~~~~~l-----~~~~---~~~i~~~~ 354 (460)
. + ...||+||+|+|+||+++|++.+|+++ +++++||+|||++++....+...+. +.++ ..++.+++
T Consensus 253 ~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGl 332 (431)
T TIGR02035 253 KKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGL 332 (431)
T ss_pred ccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccc
Confidence 1 1 125789999999999999999999987 8899999999999875443321111 0000 01112111
Q ss_pred ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc------------CCC
Q 012606 355 KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK------------LKQ 422 (460)
Q Consensus 355 ~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~------------~~~ 422 (460)
.+..++...+.+++++.++.+.|+|+|+++++++|++++||++||+ +|++++++.+++++. +.+
T Consensus 333 ---av~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpS-saa~laa~~~l~~~~~~~~~~~~~~~~~~~ 408 (431)
T TIGR02035 333 ---AVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPS-ALAGMEGPVRLLKYEDSYRYIEGRIGKNLN 408 (431)
T ss_pred ---cCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHH-HHHHHHHHHHHHhhhhhHHHHcCccccccC
Confidence 1222333455667778999999999999999999999999999996 788899888776541 114
Q ss_pred CCeEEEEecCCCcchhhHHHHH
Q 012606 423 DADVVMLHTGGTLGMFGLAQRY 444 (460)
Q Consensus 423 g~~Vv~i~TGG~~~~~~~~~ry 444 (460)
+.+.++|.|||..-.....++|
T Consensus 409 ~~~~~~~~tg~~~~p~~~~~~~ 430 (431)
T TIGR02035 409 NATHVVWATGGGMVPEEEMEAY 430 (431)
T ss_pred CCeEEEEecCCCCCCHHHHHhh
Confidence 7789999999987766655555
No 71
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.1e-41 Score=350.08 Aligned_cols=297 Identities=14% Similarity=0.081 Sum_probs=214.9
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHH-----HHhcCC-----------
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV----------- 141 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~-----a~~~g~----------- 141 (460)
.++|||+++ ++|+ +.+|...-... +.+||+|+|++| |.+||||||.+.++|.. +++.|.
T Consensus 50 ~~~TPLv~~--~~ls-~~~g~~~~~~~-~~~v~~K~E~~n-P~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~ 124 (404)
T cd06447 50 IIESPLLPI--PRMK-QALEKLYHQPI-KGRLLLKADSHL-PISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLA 124 (404)
T ss_pred ccCCCceeh--HHHH-HHhccccccCc-CceEEEEecCCC-CCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhh
Confidence 489999999 8887 44320000000 369999999999 64799999999888854 555554
Q ss_pred ----------CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHH
Q 012606 142 ----------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLK 210 (460)
Q Consensus 142 ----------~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~ 210 (460)
++||++ |+||||+|+|++|+.+|++|+||||...|+. +..+++.||| |+.++. .|++..+.
T Consensus 125 ~~~~~~~~~~~~VV~a--SsGN~G~alA~~a~~~G~~~~IvvP~~~~~~---K~~~ira~GAeVv~v~~-~~~~a~~~-- 196 (404)
T cd06447 125 SEKFRKLFSQYSIAVG--STGNLGLSIGIMAAALGFKVTVHMSADAKQW---KKDKLRSKGVTVVEYET-DYSKAVEE-- 196 (404)
T ss_pred hhhhhhcccCCEEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCcHH---HHHHHHHCCCEEEEECC-CHHHHHHH--
Confidence 478874 7899999999999999999999999988754 4457899998 999986 45543222
Q ss_pred HHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHH-c
Q 012606 211 SYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-L 289 (460)
Q Consensus 211 ~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~-~ 289 (460)
|+++ ++..+..|+++. ..+|...+||.|+++||++|+. .
T Consensus 197 --a~~l-------------------------------------a~~~~~~~~v~~-~n~~~~iaG~~T~g~EI~eQl~~~ 236 (404)
T cd06447 197 --GRKQ-------------------------------------AAADPMCYFVDD-ENSRDLFLGYAVAASRLKAQLAEL 236 (404)
T ss_pred --HHHH-------------------------------------HHHCCCeEeCCC-CCchhHHhhHHHHHHHHHHHhhhc
Confidence 1221 122223455543 4456778899999999999983 1
Q ss_pred C----CCCCCEEEEecCCchhHHHHHHHHHhc-CCCCeEEEEeccCChhhHHHHHHh-H-----------HHHHHHHhcc
Q 012606 290 G----RKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKN-L-----------ISEFKRLFGF 352 (460)
Q Consensus 290 ~----~~~pD~vvv~vGtGgt~~Gl~~~~~~~-g~~~~vigVe~~g~~~~~~~~~~~-l-----------~~~~~~~i~~ 352 (460)
+ +..||+||+|+|+||+++|++++|+++ .++++||+|||++++....+...+ . ...+++.++.
T Consensus 237 ~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~ 316 (404)
T cd06447 237 GIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAV 316 (404)
T ss_pred cCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcC
Confidence 1 113678999999999999999999987 788999999999876543321111 0 0122232222
Q ss_pred ccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc----------CCC
Q 012606 353 LLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK----------LKQ 422 (460)
Q Consensus 353 ~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~----------~~~ 422 (460)
..+....+.++++..++.+.|+|+|+.+++++|++++||++||+ +|+++||++++.++. .-.
T Consensus 317 -------~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepS-gAa~lAAl~~~~~~~~~~~~~~~~~~~~ 388 (404)
T cd06447 317 -------GRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPS-AAAGFTGPAQVLSEAEGKRYVRLGYRME 388 (404)
T ss_pred -------CCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHH-HHHHHHHHHHHHHhhhHHHhcCcccccc
Confidence 11223455667788999999999999999999999999999996 789999999987531 123
Q ss_pred CCeEEEEecCCCc
Q 012606 423 DADVVMLHTGGTL 435 (460)
Q Consensus 423 g~~Vv~i~TGG~~ 435 (460)
+.+-++|.|||..
T Consensus 389 ~~~~~~~~~~~~~ 401 (404)
T cd06447 389 NATHIVWATGGSM 401 (404)
T ss_pred CceEEEEccCCCC
Confidence 4566789999863
No 72
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3e-42 Score=323.93 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=222.7
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
-.||.+.. .++. +.. |.+||+|+|.+|. +|+||.|++.+.+..+. ++..++|||. |+||||+|
T Consensus 24 hkTpVlTS--~~ln-~~~---------g~~vfFKcE~fQK--tGaFKfRGAlNav~~l~~ek~~kgvith--SSGNHaqA 87 (323)
T KOG1251|consen 24 HKTPVLTS--ENLN-EKV---------GRHVFFKCENFQK--TGAFKFRGALNAVSSLKAEKRAKGVITH--SSGNHAQA 87 (323)
T ss_pred ccCceech--hhHH-HHh---------hhheEeehhhhhh--ccceehhhhHHHHHHhhHhhhcCceEee--cCCcHHHH
Confidence 36888887 7776 333 7799999999995 89999999999988876 6677999997 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+..|++|+|+||.+.|.. ++.-++.||+ |+++++. -++|+.+. .++.
T Consensus 88 lalaAk~~giPa~IVvP~~AP~~---Kv~a~~~Yga~ii~~e~~-~~sRE~va----~~lt------------------- 140 (323)
T KOG1251|consen 88 LALAAKILGIPATIVVPKDAPIC---KVAATRGYGANIIFCEPT-VESRESVA----KDLT------------------- 140 (323)
T ss_pred HHHHHHhcCCCeEEEecCCChHH---HHHHHHhcCceEEEecCc-cchHHHHH----HHHH-------------------
Confidence 99999999999999999998764 4456789998 9999875 24555543 2222
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
++.....+.|.+. |....|..|++.|++||. +..|.+|||+||||+++|++.+.+.
T Consensus 141 ------------------ee~g~~~i~Py~~--p~vIaGqgTiA~ElleqV----g~iDalfvpvgGGGllSgvAlaa~~ 196 (323)
T KOG1251|consen 141 ------------------EETGYYLIHPYNH--PSVIAGQGTIALELLEQV----GEIDALFVPVGGGGLLSGVALAAKS 196 (323)
T ss_pred ------------------HhcCcEEeCCCCC--cceeeccchHHHHHHHhh----CccceEEEeecCcchhhHHHHHHhc
Confidence 1222223334333 444445666999999997 3789999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH-HH-HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l-~~-~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
+.|+++|++|||++..+...+...+- +. ..-++|+++.. ...+++.+|.+++++.++++.|+|+|+.++++.+++
T Consensus 197 l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r---~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~e 273 (323)
T KOG1251|consen 197 LKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVR---TSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWE 273 (323)
T ss_pred cCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhh---hccccccchHHHHHHhhhheeecHHHHHHHHHHHHH
Confidence 99999999999998877655543321 10 11133443321 112445788899999999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhh
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFG 439 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~ 439 (460)
+..+.+||+ ++.++||++....+. ..+++.+|+||||.|+..
T Consensus 274 rmK~~vEPT-a~lgfAavl~~k~~~--~~K~igIiLsGGNVD~~~ 315 (323)
T KOG1251|consen 274 RMKVVVEPT-AALGFAAVLSHKFAL--NIKRIGIILSGGNVDLNS 315 (323)
T ss_pred HHheeeccc-hhHHHHHHHhhhHHh--ccCceEEEEeCCcccccc
Confidence 999999997 678899988654322 378999999999999876
No 73
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=8.7e-41 Score=348.30 Aligned_cols=324 Identities=14% Similarity=0.043 Sum_probs=219.1
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..++|||+++ ++|+ +.+|. +++||+|+|++| | +||||+|.+..++..+++.|.+++|+. +++||||.
T Consensus 74 ~~~~TPL~~~--~~L~-~~lg~-------~~~Iy~K~E~~n-P-tGS~K~R~A~~~a~~a~~~G~~~~vte-tgsGN~G~ 140 (427)
T PRK12391 74 LWRPTPLIRA--RRLE-KALGT-------PAKIYYKYEGVS-P-TGSHKPNTAVAQAYYNKKEGIKRLTTE-TGAGQWGS 140 (427)
T ss_pred ccCCCCeeEc--hhhH-hhhCC-------CceEEEEEcCCC-C-CCChHHHHHHHHHHHHHHCCCCEEEEc-cCchHHHH
Confidence 4589999999 9988 55432 479999999999 7 899999999988888999999999873 24599999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
|+|++|+.+|++|+||||...+..+..+..+|+.||| |+.++.. +++..+. .++++.+...+....
T Consensus 141 alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~-~~~~~~~------~~~~~~~~~gsl~~a------ 207 (427)
T PRK12391 141 ALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSD-LTEAGRK------ILAEDPDHPGSLGIA------ 207 (427)
T ss_pred HHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCc-hhhhhhh------hhhcCccccccHHHH------
Confidence 9999999999999999997543323234567899998 9998863 3321110 011111111111000
Q ss_pred hhhhhhccccccccccccccc-CCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNC-RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~-~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
++.+.++... ....|+++.. .|+ ...|+.++++||++|+...+..||+||+|+|+|||++|++.+|
T Consensus 208 -----------i~~A~e~a~~~~~~~y~~~s~-~~~-~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f 274 (427)
T PRK12391 208 -----------ISEAVEDAAKRPDTKYALGSV-LNH-VLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPF 274 (427)
T ss_pred -----------HHHHHHHHHhCCCcEEEcCCC-CcH-HHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHH
Confidence 0111122222 2335655433 232 3458888999999998522246999999999999999999988
Q ss_pred Hh---cC-CCCeEEEEeccCChhhHHHHHH-------hHHH-HHHHHhccccccCCcc-------cccchhhHHhhhcCC
Q 012606 315 IC---LG-LPWEVTAIALVDTIDGYKQQEK-------NLIS-EFKRLFGFLLKKSSLN-------EVDGEIVHWVERCRP 375 (460)
Q Consensus 315 ~~---~g-~~~~vigVe~~g~~~~~~~~~~-------~l~~-~~~~~i~~~~~p~~~~-------~~~~~~~~l~~~~~~ 375 (460)
.. .| +.+||||||+++++........ .+.. .-..++|.+++|.... ...+....+.+....
T Consensus 275 ~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~ 354 (427)
T PRK12391 275 LGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLI 354 (427)
T ss_pred HHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCce
Confidence 43 46 7899999999988654332110 0000 0001233333222110 011112233444444
Q ss_pred CeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc--CCCCCeEEEEecC-CCcchhhH
Q 012606 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK--LKQDADVVMLHTG-GTLGMFGL 440 (460)
Q Consensus 376 ~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~--~~~g~~Vv~i~TG-G~~~~~~~ 440 (460)
+.+.|+|+|+++++++|++++||++||+ ||++++++++++++. ..++++||+++|| |+.|+...
T Consensus 355 ~~~~V~d~e~~~a~~~~a~~eGi~~~ps-s~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~~y 421 (427)
T PRK12391 355 EARAYPQTEVFEAAVLFARTEGIVPAPE-SSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLAAY 421 (427)
T ss_pred EEEEECHHHHHHHHHHHHHHcCCeechH-HHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHHHH
Confidence 6789999999999999999999999997 789999999877542 2347899999999 99997764
No 74
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1e-41 Score=345.70 Aligned_cols=289 Identities=14% Similarity=0.025 Sum_probs=214.2
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCc-eEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA 155 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~-~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg 155 (460)
..|+|||+++ ++++ ..+ +. +||+|+|++| | +||||||++.+++..+.+.|..+||+ +|+||||
T Consensus 20 ~~g~TPl~~~--~~l~-~~~---------g~~~i~~K~E~~n-p-tGSfKdR~a~~~l~~a~~~g~~~vv~--aSsGN~g 83 (328)
T TIGR00260 20 GEGVTPLFRS--PALV-ANV---------GIKNLYVLELFHN-P-TLSFKDRGMAVALTKALELGNDTVLC--ASTGNTG 83 (328)
T ss_pred ccCCccCccc--hHHH-Hhc---------CCccEEehhhccC-C-chhhHhhhHHHHHHHHHHcCCCEEEE--eCCcHHH
Confidence 4599999999 8887 433 44 8999999998 7 99999999999999999999988888 4789999
Q ss_pred HHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHH
Q 012606 156 TAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (460)
Q Consensus 156 ~AlA~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~ 233 (460)
+|+|++|+.+|++|+||||.. .++ .+..+++.||+ |+.+++ .+++..+.. ++++
T Consensus 84 ~a~A~~a~~~g~~~~v~~p~~~~s~---~k~~~~~~~GA~Vi~~~~-~~~~~~~~~----~~~~---------------- 139 (328)
T TIGR00260 84 AAAAAYAGKAGVKVVILYPAGKISL---GKLAQALGYNAEVVAIDG-NFDDAQRLV----KQLF---------------- 139 (328)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCH---HHHHHHHhcCcEEEEecC-CHHHHHHHH----HHHH----------------
Confidence 999999999999999999987 542 45667899998 999986 465433322 1111
Q ss_pred HHhhhhhhcccccccccccccccCCcEEEecCCCcc--hHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD--AVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n--p~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+.. ..| +.+..| |...+|+.+++.||++|+. +..||+||+|+||||+++|++
T Consensus 140 ---------------------~~~-~~~--~~~~~n~~~~~~~g~~t~~~Ei~~q~~--~~~~d~iv~~vG~GG~~~G~~ 193 (328)
T TIGR00260 140 ---------------------GDK-EAL--GLNSVNSIPYRLEGQKTYAFEAVEQLG--WEAPDKVVVPVPNSGNFGAIL 193 (328)
T ss_pred ---------------------hhc-Cee--ecccCCCCCeEeeeehhHHHHHHHHhC--CCCCCEEEEECCCcchHHHHH
Confidence 111 112 223334 7777899999999999972 236999999999999999999
Q ss_pred HHHHhc---C--CCCeEEEEeccCChhhHHHHHH-h-HHHH-HHHHhcccc-ccCCcccccchhhHHhhhcCCCeEEeCc
Q 012606 312 LGAICL---G--LPWEVTAIALVDTIDGYKQQEK-N-LISE-FKRLFGFLL-KKSSLNEVDGEIVHWVERCRPRKFGNVF 382 (460)
Q Consensus 312 ~~~~~~---g--~~~~vigVe~~g~~~~~~~~~~-~-l~~~-~~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~~~~~v~d 382 (460)
.+|++. | ..++|++||++++.+.+..... + .... ...++..++ ++. +...+..+.+.+++.++.+.|+|
T Consensus 194 ~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~--p~~~~~~~~~~~~~~~~~~~V~d 271 (328)
T TIGR00260 194 KGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGN--PANWERALELFRRSNGNAEDVSD 271 (328)
T ss_pred HHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCC--CCCHHHHHHHHHhcCCcEEecCH
Confidence 999974 2 0239999999998543332111 0 0000 001111111 010 11112345567788999999999
Q ss_pred HHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCC
Q 012606 383 EGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT 434 (460)
Q Consensus 383 ~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~ 434 (460)
+|++++++++++++||++||+ +|+++|+++++.++ .+.++++||+++||+.
T Consensus 272 ~e~~~a~~~l~~~~gi~~~ps-sa~alaa~~~~~~~~~~~~~~~vv~i~tG~~ 323 (328)
T TIGR00260 272 EEILEAIKLLAREEGYFVEPH-SAVSVAALLKLVEKGTADPAERVVCALTGNG 323 (328)
T ss_pred HHHHHHHHHHHHhcCeeECch-HHHHHHHHHHHHhCCCCCCCCcEEEEecCCC
Confidence 999999999999999999997 89999999988764 3556889999999954
No 75
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.6e-40 Score=323.22 Aligned_cols=240 Identities=21% Similarity=0.208 Sum_probs=200.2
Q ss_pred CCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC---CCeEEEeCCccchHHHH
Q 012606 81 GPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHATA 157 (460)
Q Consensus 81 TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g---~~~VVt~Gas~GNhg~A 157 (460)
|||+++ ++++ +.. +.+||+|+|++| | +||||||++.+++..+++.| .++||++ |+||||.|
T Consensus 1 TPl~~~--~~l~-~~~---------~~~l~~K~e~~~-p-tgS~K~R~a~~~l~~a~~~g~~~~~~vv~~--ssGN~g~a 64 (244)
T cd00640 1 TPLVRL--KRLS-KLG---------GANIYLKLEFLN-P-TGSFKDRGALNLILLAEEEGKLPKGVIIES--TGGNTGIA 64 (244)
T ss_pred CCeeEc--cccc-ccc---------CCEEEEEecccC-C-cCCcHHHHHHHHHHHHHHcCCCCCCEEEEe--CCcHHHHH
Confidence 899999 8887 422 679999999998 6 79999999999999999988 5778874 55999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+.+|++|++|||...+. .+..+++.+|+ |+.+++. ++++... +++
T Consensus 65 lA~~a~~~g~~~~v~~p~~~~~---~~~~~~~~~Ga~v~~~~~~-~~~~~~~----a~~--------------------- 115 (244)
T cd00640 65 LAAAAARLGLKCTIVMPEGASP---EKVAQMRALGAEVVLVPGD-FDDAIAL----AKE--------------------- 115 (244)
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHH---------------------
Confidence 9999999999999999988743 45667899998 9999875 5432222 111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+.+..+++|+++. +.||...+|+.+++.||.+|+. +..||+||+|+|||||++|++.+|++
T Consensus 116 ----------------~~~~~~~~~~~~~-~~n~~~~~g~~~~~~Ei~~q~~--~~~~d~ivvp~GtGg~~~G~~~~~~~ 176 (244)
T cd00640 116 ----------------LAEEDPGAYYVNQ-FDNPANIAGQGTIGLEILEQLG--GQKPDAVVVPVGGGGNIAGIARALKE 176 (244)
T ss_pred ----------------HHHhCCCCEecCC-CCCHHHHHHHHHHHHHHHHHcC--CCCCCEEEEecCccHHHHHHHHHHHH
Confidence 1222245666654 4789999999999999999973 22599999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHh
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT 396 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~e 396 (460)
.++.++||||++ ..+.|+|+|++++++++++++
T Consensus 177 ~~~~~~ii~v~~-----------------------------------------------~~~~v~d~~~~~a~~~l~~~~ 209 (244)
T cd00640 177 LLPNVKVIGVEP-----------------------------------------------EVVTVSDEEALEAIRLLAREE 209 (244)
T ss_pred hCCCCEEEEEee-----------------------------------------------eEEEECHHHHHHHHHHHHHHc
Confidence 999999999998 256789999999999999999
Q ss_pred CCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 397 GILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 397 GI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
||++||+ +|++++++.++.++. .++++||+++|||
T Consensus 210 gi~~~ps-sa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 210 GILVEPS-SAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred CceECHh-HHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 9999997 899999999887543 4688999999996
No 76
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.8e-40 Score=343.78 Aligned_cols=297 Identities=14% Similarity=0.045 Sum_probs=212.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCC-ceEEEEeCCCCCCCCchhHHHhHHhhHHHH--HhcC---------------
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLL--EDHI--------------- 140 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a--~~~g--------------- 140 (460)
.+|||+++ ++|+ +.+ | .+||+|+|++++| +||||+|++.+.+..+ .+.|
T Consensus 40 ~~TPL~~~--~~L~-~~~---------g~~~v~lK~E~~q~~-tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~ 106 (396)
T TIGR03528 40 QPTPLAEL--DNLA-KHL---------GVGSILVKDESYRFG-LNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNE 106 (396)
T ss_pred cCCCCcch--HHHH-HHh---------CCCcEEEeeCCCCCC-cCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHH
Confidence 79999999 8887 444 5 6899999999876 8999999998888764 2222
Q ss_pred ------CCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHh
Q 012606 141 ------VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYA 213 (460)
Q Consensus 141 ------~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A 213 (460)
..+||+ +|+||||+|+|++|+++|++|+||||...++. +...++.||| |+.++. .|++..+. |
T Consensus 107 ~~~~~~~~~vv~--aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~---K~~~ir~~GAeVi~~~~-~~~~a~~~----a 176 (396)
T TIGR03528 107 IREKLGDITFVT--ATDGNHGRGVAWAANQLGQKSVVYMPKGSAQI---RLENIRAEGAECTITDL-NYDDAVRL----A 176 (396)
T ss_pred HHhhccCcEEEE--ECccHHHHHHHHHHHHcCCCEEEEEeCCCcHH---HHHHHHhcCCEEEEECC-CHHHHHHH----H
Confidence 236887 47899999999999999999999999988643 4456799998 999986 35543222 2
Q ss_pred hhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecC----CCc--chHHHHHHHHHHHHHHHhH
Q 012606 214 NLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDH 287 (460)
Q Consensus 214 ~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~----g~~--np~~~~G~~t~~~Ei~eq~ 287 (460)
++++.+. ..++++. +.. +|....||.|++.||++|+
T Consensus 177 ~~~a~~~--------------------------------------g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl 218 (396)
T TIGR03528 177 WKMAQEN--------------------------------------GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQL 218 (396)
T ss_pred HHHHHhc--------------------------------------CcEeeccccccccccCchHHHHHHhHHHHHHHHHH
Confidence 2222111 1233321 222 3566789999999999998
Q ss_pred H-cCCCCCCEEEEecCCchhHHHHHHHHHh-cCCC-CeEEEEeccCChhhHHHHHH--h-H--HHHHHHHhccccccCCc
Q 012606 288 L-LGRKRAIKFVVDAGTGTTAVGLGLGAIC-LGLP-WEVTAIALVDTIDGYKQQEK--N-L--ISEFKRLFGFLLKKSSL 359 (460)
Q Consensus 288 ~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~-~g~~-~~vigVe~~g~~~~~~~~~~--~-l--~~~~~~~i~~~~~p~~~ 359 (460)
. .++..||+||+|+|+||++.|++.+|++ .++. ++||||||+++...+.+... + . +++-..++.+++ ..
T Consensus 219 ~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl---~~ 295 (396)
T TIGR03528 219 KEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGL---AC 295 (396)
T ss_pred hhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceeccc---cc
Confidence 4 2334699999999999999999998854 3444 59999999998765544221 1 0 110011233222 11
Q ss_pred ccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH----HhCCcccccchHHHHHHHHHHhh---------h-cCCCCCe
Q 012606 360 NEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ----LTGILVDPVYTLAAWEMATLLSD---------E-KLKQDAD 425 (460)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~----~eGI~vEP~ysgaa~Aal~~~~~---------~-~~~~g~~ 425 (460)
..++...+.+++++.++.+.|+|+|+.+++++|++ ++++++||+ +++++|++..++. + .+.++++
T Consensus 296 ~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~eps-ga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~ 374 (396)
T TIGR03528 296 GEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGES-GAVGTGLLAAVMTNPDYKELREKLQLDKNSR 374 (396)
T ss_pred CCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCc-HHHHHHHHHHHHhCchhHHHHHhcCCCCCCE
Confidence 11223456778889999999999999999999998 579999996 6777755533321 1 2345889
Q ss_pred EEEEecCCCcchhhH
Q 012606 426 VVMLHTGGTLGMFGL 440 (460)
Q Consensus 426 Vv~i~TGG~~~~~~~ 440 (460)
||+|+||||.|...+
T Consensus 375 vv~i~tggn~d~~~~ 389 (396)
T TIGR03528 375 VLLISTEGDTDPDNY 389 (396)
T ss_pred EEEEECCCCCCHHHH
Confidence 999999999997764
No 77
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2e-40 Score=331.49 Aligned_cols=290 Identities=21% Similarity=0.189 Sum_probs=207.0
Q ss_pred cCCCCCcccccC-CCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 78 HGGGPLGGISFL-NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 78 ~g~TPL~~~~~~-~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
-++|||+++ + ++. . +..+.+||+|+|++| | +||||+|++.+++..++++|.++|+. +|+||||.
T Consensus 5 ~~~TPl~~~--~~~~~-~--------~~~~~~i~~K~E~~~-p-tgs~K~R~a~~~l~~a~~~~~~~vv~--assGN~g~ 69 (306)
T PF00291_consen 5 IGPTPLVRL--PSRLL-S--------ELGGANIYLKREDLN-P-TGSFKDRGAYYLLSRAKEKGGRTVVG--ASSGNHGR 69 (306)
T ss_dssp SSSS-EEEE--HEHHH-H--------HCTTSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTTSEEEE--ESSSHHHH
T ss_pred CcCCCEEEC--ccccc-h--------hccCCeEEEEECCCC-C-cCCcccccchhhhhhccccccceeee--eccCCcee
Confidence 489999997 5 111 1 122789999999999 8 89999999999999999999999975 47899999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~ 235 (460)
|+|++|+.+|++|+||||...++ .+..+++.+|+ |+.++.. ++........+++ +.+.
T Consensus 70 a~A~~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~~~~~-----------------~~~~ 128 (306)
T PF00291_consen 70 ALAYAAARLGLKCTIVVPEDVSP---EKLKQMRALGAEVILVPGD-VEGAFDDAQELAK-----------------ERAE 128 (306)
T ss_dssp HHHHHHHHHTCEEEEEEETTSHH---HHHHHHHHTTCEEEEESST-HHHHHHHHHHHHH-----------------HHHH
T ss_pred hhhhhhhhccccceeeecccccc---ccccceeeecceEEEcccc-ccccccccccccc-----------------cccc
Confidence 99999999999999999988643 45668899998 9888764 2221111111111 0000
Q ss_pred hhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHH
Q 012606 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (460)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~ 315 (460)
.....+.. ++.. .||....|+.+++.||.+|+. .+++|.||+|+||||+++|++.+++
T Consensus 129 -----------------~~~~~~~~--~~~~-~~~~~~~g~~~~~~Ei~~q~~--~~d~d~vvv~~GtGg~~~Gi~~~~~ 186 (306)
T PF00291_consen 129 -----------------LLSPFNGE--LNQY-NNPNVIAGYATIGLEIYEQLG--KPDPDYVVVPVGTGGTAAGIAAGLK 186 (306)
T ss_dssp -----------------HHHHSTTE--ESTT-TSHHHHHHHHHHHHHHHHHHT--TESESEEEEEESSSHHHHHHHHHHH
T ss_pred -----------------cccccccc--cCcc-cchhhhhhhhhcchhcccccc--cccceEEEecCCchhHHHHHHhhhh
Confidence 00111111 3333 678899999999999999973 2234559999999999999999999
Q ss_pred h--cCCCCeEEEEeccCChhhHHHHHHhHH-----HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 316 C--LGLPWEVTAIALVDTIDGYKQQEKNLI-----SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 316 ~--~g~~~~vigVe~~g~~~~~~~~~~~l~-----~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
. . +.++||||++.++.........+.. ......++.. ........+++++++.++.+.|+|+|++++
T Consensus 187 ~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~-----~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a 260 (306)
T PF00291_consen 187 ELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVP-----MPFPGELDLELIDEYVGDVVGVSDEEALEA 260 (306)
T ss_dssp HHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSS-----SCTTTTHHHHHHHHETEEEEEEEHHHHHHH
T ss_pred hhhc-ccccceeeeccCCccccccccccccccccceeeeecccCC-----ccchhhhhhhhhhhccccccccchHHHHHH
Confidence 8 7 8999999999887553322211100 0000122211 101223467788888888899999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhc-C--CCCCeEEEEecC
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEK-L--KQDADVVMLHTG 432 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~--~~g~~Vv~i~TG 432 (460)
++++++++||++||+ +++++++++++.++. + +++++||+||||
T Consensus 261 ~~~l~~~~gi~~~p~-~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 261 IRELAEREGILVEPS-SAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHSB-B-HH-HHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred HHHHHHHcCcEEcHH-HHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 999999999999998 567888888776543 3 478999999998
No 78
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=329.28 Aligned_cols=289 Identities=16% Similarity=0.135 Sum_probs=224.3
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHH-HhcCCCeEEEeCCccchHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHA 155 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a-~~~g~~~VVt~Gas~GNhg 155 (460)
+.-.|||.+. .-|+ ..+ |.++|+|+||++ | +||||.|++.|++... +++.+.+||++ |.||||
T Consensus 63 ~~~~TPl~~s--~~lS-~~~---------g~~vyLK~E~lQ-p-sgSFK~RGa~~~~~kla~~~~~~gVias--SaGNha 126 (457)
T KOG1250|consen 63 VIVETPLLKS--VALS-KKA---------GMPVYLKREDLQ-P-SGSFKIRGAGNALQKLAKQQKKAGVIAS--SAGNHA 126 (457)
T ss_pred ceecccchhh--hhhh-hhc---------CCceEEEehhcc-c-ccceehhhHHHHHHHHHHhhhcCceEEe--cCccHH
Confidence 4568999987 6777 433 789999999999 7 8999999999988775 44447889985 569999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 156 TAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 156 ~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
+|+|++|+++|++|+||||..+|..+ ...++-+|| |+..+. .|+... ++|.++|.++|
T Consensus 127 ~a~Ayaa~~LgipaTIVmP~~tp~~k---iq~~~nlGA~Vil~G~-~~deAk----~~a~~lAke~g------------- 185 (457)
T KOG1250|consen 127 QAAAYAARKLGIPATIVMPVATPLMK---IQRCRNLGATVILSGE-DWDEAK----AFAKRLAKENG------------- 185 (457)
T ss_pred HHHHHHHHhcCCceEEEecCCChHHH---HHHHhccCCEEEEecc-cHHHHH----HHHHHHHHhcC-------------
Confidence 99999999999999999999987643 345788999 776654 465422 23344432221
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
-.|+.|+ .||..++|..|++.||.+|+. ..++.|||||||||+++||+.++
T Consensus 186 ------------------------l~yI~pf--DhP~I~aGqgTig~EIl~ql~---~~~~AI~vpVGGGGLiaGIat~v 236 (457)
T KOG1250|consen 186 ------------------------LTYIPPF--DHPDIWAGQGTIGLEILEQLK---EPDGAIVVPVGGGGLIAGIATGV 236 (457)
T ss_pred ------------------------ceecCCC--CCchhhcCcchHHHHHHHhhc---CCCCeEEEecCCchhHHHHHHHH
Confidence 2244443 467777888889999999983 23459999999999999999999
Q ss_pred HhcCCCCeEEEEeccCChhhHHHHHHh------HHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 315 ICLGLPWEVTAIALVDTIDGYKQQEKN------LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 315 ~~~g~~~~vigVe~~g~~~~~~~~~~~------l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
+..+|.++|||||.+++.....+...+ .+..+++.+ .++.++..+|.+.+.+.++.+.|.|+|+..+
T Consensus 237 k~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~Adgl-------aV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aa 309 (457)
T KOG1250|consen 237 KRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGL-------AVKTVGENTFELAQKLVDRVVVVEDDEIAAA 309 (457)
T ss_pred HHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhccc-------ccchhhHHHHHHHHhcCceEEEeccHHHHHH
Confidence 999999999999999987643332111 122333333 3344567789999999999999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhH
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~ 440 (460)
|.++.+++..++||+ .|+++|++.... -.-.++++||.+++|||.+.+.+
T Consensus 310 I~~l~edek~vvEpA-gaaaLaai~~~~-~~~lk~~~vv~ilsG~n~~~~~L 359 (457)
T KOG1250|consen 310 ILRLFEDEKMVVEPA-GAAALAAIYSGK-LNHLKGKKVVSILSGGNIDFDSL 359 (457)
T ss_pred HHHHHHhhhheeccc-hHHHHHHHHhcc-ccccCCceEEeecccCCCCcccc
Confidence 999999999999997 689999998873 22357899999999999987664
No 79
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-39 Score=314.66 Aligned_cols=348 Identities=15% Similarity=0.120 Sum_probs=254.3
Q ss_pred ceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEe
Q 012606 37 GICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (460)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKr 113 (460)
|-.--.|+||.|+..|.| ..+-....|..||+. ..+++ |+++||||++. +||+ ++++. |++||+||
T Consensus 77 gkfgg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~-y~gRpspL~~A--kRLt-e~~q~-------ga~IylKr 145 (477)
T KOG1395|consen 77 GKFGGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK-YLGRPSPLIRA--KRLT-EHCQT-------GARIYLKR 145 (477)
T ss_pred cccCCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HcCCCchhHHH--HHHH-HHhCC-------CCEEEEEe
Confidence 444457899999999887 555555677888888 55554 89999999999 9998 77643 89999999
Q ss_pred CCCCCCCCchhHHHhHHhhHHH---HHhcCCCeEEE-eCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHH
Q 012606 114 DDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIST 189 (460)
Q Consensus 114 Edln~p~~GsnK~Rkl~~~l~~---a~~~g~~~VVt-~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~ 189 (460)
||+|| +|| +|.++.++| |++.|++.||+ +|+.| ||+|+|.+|+++|+.|+|||..++-.++..|+++||
T Consensus 146 Edlnh--~Gs---HKiNnav~QallakrlGkknviaETGAGQ--hGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmr 218 (477)
T KOG1395|consen 146 EDLNH--TGS---HKINNAVAQALLAKRLGKKNVIAETGAGQ--HGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMR 218 (477)
T ss_pred cCCCc--ccc---CCcccHHHHHHHHHHhcccceeeccCCCc--cchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHH
Confidence 99996 777 556777777 48899999997 88855 999999999999999999999988888888999999
Q ss_pred hCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCc
Q 012606 190 IYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG 268 (460)
Q Consensus 190 ~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~ 268 (460)
.+|| |+.|+.+....+++..+ ..+.|+.++..++|. +. .+.+++||
T Consensus 219 llGAkV~pv~sGt~tLrda~se----------a~r~wvt~~ett~y~--------------~g--s~~gphp~------- 265 (477)
T KOG1395|consen 219 LLGAKVHPVTSGTRTLRDATSE----------AGRLWVTNSETTHYA--------------AG--SAIGPHPY------- 265 (477)
T ss_pred HhCceEeecCCCceehhcccch----------hhhhhhhhhheeeee--------------ec--ccCCCCCc-------
Confidence 9999 99999887666665543 367899877666553 22 22345554
Q ss_pred chHHHHHHHHH-HHHHHHhH-HcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHH------
Q 012606 269 DAVALLGVFRL-LQYLSQDH-LLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEK------ 340 (460)
Q Consensus 269 np~~~~G~~t~-~~Ei~eq~-~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~------ 340 (460)
|..+.-++++ +.|-..|. +.-+..||.||.|||+|++.+|++..|. .+..++++||+..+........-.
T Consensus 266 -pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~-~dk~v~~igveaagdg~dtp~hsatltagd 343 (477)
T KOG1395|consen 266 -PTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFI-RDKSVGMIGVEAAGDGVDTPKHSATLTAGD 343 (477)
T ss_pred -HHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhh-ccchhheeeeeecccccCCcchhceeeccc
Confidence 4556666655 67776665 3223689999999999999999999998 456789999998764311110000
Q ss_pred -hHHHHHH-----HHhccccccC------CcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHH
Q 012606 341 -NLISEFK-----RLFGFLLKKS------SLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAA 408 (460)
Q Consensus 341 -~l~~~~~-----~~i~~~~~p~------~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa 408 (460)
+..++.. +..|-.++|. .++.++++.-+|-+.-.-..+.++|.|.+++.+++++.|||.--|- +.-|
T Consensus 344 ~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlE-ssHA 422 (477)
T KOG1395|consen 344 VGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALE-SSHA 422 (477)
T ss_pred ccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCc-hhhH
Confidence 1111100 1112111121 2233344444444444556789999999999999999999997775 4478
Q ss_pred HHHHHHHhhhcCCCCCeEEEEecC-CCcchhh
Q 012606 409 WEMATLLSDEKLKQDADVVMLHTG-GTLGMFG 439 (460)
Q Consensus 409 ~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~ 439 (460)
+++...+++ .+++++.||+-.|| |-.|+..
T Consensus 423 va~~~~lck-~l~~~k~ivi~~sGrGdkDvqS 453 (477)
T KOG1395|consen 423 VAGEAELCK-TLPEDKVIVINISGRGDKDVQS 453 (477)
T ss_pred HHHHHHhcc-ccCCCcEEEEEecCCCCchHHH
Confidence 888777765 45778999999999 8888766
No 80
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-39 Score=313.35 Aligned_cols=296 Identities=16% Similarity=0.111 Sum_probs=216.8
Q ss_pred chhhhhccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC---
Q 012606 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--- 141 (460)
Q Consensus 65 ~~~~~~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~--- 141 (460)
..|.+..+. |+|||+.+ .++. . |. .++||+|+|.+| | +||.|||-+..|+.+|+..|.
T Consensus 42 ~~~~~~~li-----G~TPlv~l--n~i~-~--g~-------~~~i~~K~E~~~-p-~~SvKdRia~sMi~~Ae~~G~i~p 102 (362)
T KOG1252|consen 42 ILWDVRDLI-----GNTPLVKL--NKIA-G--GC-------VARIAAKLEYMN-P-GGSVKDRIAWSMIEDAEKKGLITP 102 (362)
T ss_pred hhhhHHHHh-----CCCceEEe--cccc-C--Cc-------cceEEEEeeecC-C-cccHHHHHHHHHHHHHHHcCCccC
Confidence 345555655 99999999 7774 2 22 679999999999 7 899999999999999999885
Q ss_pred --CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCc-hhhHHHHHHHHhhhhh
Q 012606 142 --TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVA 217 (460)
Q Consensus 142 --~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~la 217 (460)
++||. +++||+|+++|+.|+.+|++|+++||++++.++ +.++++||+ |+++|... ++..+.+.+
T Consensus 103 g~stliE--pTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek---~~~l~a~Gaeii~tp~a~~~~~~e~ai~------- 170 (362)
T KOG1252|consen 103 GKSTLIE--PTSGNTGIGLAYMAALRGYKCIITMPEKMSKEK---RILLRALGAEIILTPPAAGMKGPESAIG------- 170 (362)
T ss_pred CceEEEe--cCCCchHHHHHHHHHHcCceEEEEechhhhHHH---HHHHHHcCCEEEecChHHccCChHHHHH-------
Confidence 45664 688999999999999999999999999987653 456799998 99988532 111111111
Q ss_pred cCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCc---chHHHHHHHHHHHHHHHhHHcCCCCC
Q 012606 218 GNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG---DAVALLGVFRLLQYLSQDHLLGRKRA 294 (460)
Q Consensus 218 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~---np~~~~G~~t~~~Ei~eq~~~~~~~p 294 (460)
.+.++.++.++.| +.+|.. ||. .||.+++.||++|+. ..+
T Consensus 171 -------------------------------~a~~l~~~~pna~-~l~Qf~np~Np~--~hy~ttg~EI~~q~~---g~v 213 (362)
T KOG1252|consen 171 -------------------------------KAEELLNKTPNAY-ILDQFHNPGNPL--AHYETTGPEIWRQLD---GKV 213 (362)
T ss_pred -------------------------------HHHHHHHhCCChH-HHHHhcCCCCcc--cccccccHHHHHHhc---CCC
Confidence 1222333445554 344444 444 589999999999983 479
Q ss_pred CEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHH-hHHHHHHHHhccccccCCcccccchhhHHhhhc
Q 012606 295 IKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEK-NLISEFKRLFGFLLKKSSLNEVDGEIVHWVERC 373 (460)
Q Consensus 295 D~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~-~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~ 373 (460)
|.||.++|||||++|+.+.+++.+++++|++|+|.++.-. +... +....-.+.||.+++|..+ +...
T Consensus 214 Di~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~--~~~~~g~~~~~I~GIGyg~~p~~l----------d~~~ 281 (362)
T KOG1252|consen 214 DIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVL--SGGKPGPTFHKIQGIGYGFIPTTL----------DTKL 281 (362)
T ss_pred CEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceec--cCCCCCCCccceeccccCcCcccc----------chHH
Confidence 9999999999999999999999999999999999987531 1100 0000011346777665432 3333
Q ss_pred CCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHHh
Q 012606 374 RPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSF 448 (460)
Q Consensus 374 ~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~~ 448 (460)
.+..+.+.+++++.+.|+|+.+||++++++ ||++++++++++++...+++-||+++ .+..+||.+.|
T Consensus 282 vd~~~~~~~d~A~~~Ar~La~eeGll~G~S-SGan~~aAl~~a~~~en~~kliV~~~-------pd~ge~Y~st~ 348 (362)
T KOG1252|consen 282 VDEVLKVSSDEAIEMARRLALEEGLLVGIS-SGANVAAALKLAKRPENAGKLIVVTF-------PDFGERYLSTF 348 (362)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCeeeccc-chHHHHHHHHHHhccccCCcEEEEEC-------CCcchhhhhhh
Confidence 444667899999999999999999999985 78888888888765333444455553 44568888875
No 81
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=302.04 Aligned_cols=295 Identities=19% Similarity=0.142 Sum_probs=220.5
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
-.|.||+++. +++. ..+|. . +.++|+|.|.+| | |+|||||.+..++..+.+.|..+|++ +|+||+|.
T Consensus 73 ~eg~tp~~~~--~~~~-~~l~~-----~-~~~lyvk~~~~n-P-T~SFKDrg~~~~~~~~~~~g~~~I~~--ASSGnTgA 139 (411)
T COG0498 73 GEGGTPLYKA--PALA-APLGV-----L-NDNLYVKELGHN-P-TGSFKDRGMTVLVSLAKELGAKTILC--ASSGNTGA 139 (411)
T ss_pred hhccCccccC--cccc-hhhcc-----C-CcceehhhhccC-C-CcchhhhhHHHHHHHHHHhcCCEEEE--eCCchHHH
Confidence 3599999998 8877 33331 0 235999999999 7 99999999999999999988766665 58899999
Q ss_pred HHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
|+|+++++.|++|+|++|.. .+. .+..+|..+|+ ++.|++. +|+..+..++.
T Consensus 140 s~aaya~rag~~v~Vl~P~g~vs~---~k~~q~~~~ga~~i~v~G~-fDda~~~vk~~---------------------- 193 (411)
T COG0498 140 SAAAYAARAGLKVFVLYPKGKVSP---GKLAQMLTLGAHVIAVDGN-FDDAQELVKEA---------------------- 193 (411)
T ss_pred HHHHHhccCCCeEEEEecCCCCCH---HHHHHHHhcCCEEEEEcCc-HHHHHHHHHHH----------------------
Confidence 99999999999999999987 543 45668999998 9999874 77655444321
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
.+.. .++...+..||...+|++++++||++|+ +|..||+|+||+|.||++.|+++||
T Consensus 194 -------------------~~~~--~~~~~~nsiNp~rlegq~t~~fe~~~ql--~~~~p~~v~vPvGn~gni~a~~~g~ 250 (411)
T COG0498 194 -------------------ANRE--GLLSAVNSINPYRLEGQKTYAFEIAEQL--GWKAPDHVVVPVGNGGNLLAIYKGF 250 (411)
T ss_pred -------------------HhhC--CceeeccccCHHHhhhhhhhHhHHHHHh--CCCCCCeEEEeCCchHHHHHHHHHH
Confidence 1111 1122334568999999999999999997 5568999999999999999999999
Q ss_pred HhcCC------CCeEEEEeccCChhhHHHHHHh--HHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHH
Q 012606 315 ICLGL------PWEVTAIALVDTIDGYKQQEKN--LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 386 (460)
Q Consensus 315 ~~~g~------~~~vigVe~~g~~~~~~~~~~~--l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~ 386 (460)
++.-+ -+++.+|++++..+.......+ ....++..+... .|..+ +..+..+++..+....|+|+|++
T Consensus 251 ~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~p~n~----~r~l~a~~es~g~~~~vsdeEi~ 325 (411)
T COG0498 251 KEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-NPSNW----ERALFALRESGGLAVAVSDEEIL 325 (411)
T ss_pred HhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccC-CCCCH----HHHHHHHHhcCCceEEeCHHHHH
Confidence 97532 4688899988854433222111 112222211111 12222 22333455666778899999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhh
Q 012606 387 EACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFG 439 (460)
Q Consensus 387 ~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~ 439 (460)
++++++++++|+++||. ||++++++.++.++.+.+++++|++.|| |.++...
T Consensus 326 ~a~~~l~~~eG~~~eP~-sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 326 EAIKLLAEREGILIEPH-SAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred HHHHHHHHhCCcccCcc-HHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 99999999999999997 8999999999876545678899999999 6777655
No 82
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=281.47 Aligned_cols=302 Identities=15% Similarity=0.079 Sum_probs=221.8
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC---CeEEEeCCccchHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV---TDLVTCGGCQSAHA 155 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~---~~VVt~Gas~GNhg 155 (460)
|+|||+++ ..|+ +. + |++||.|.|.+| | .||.|||.+.+++..|++.|. ...|+- |+.||+|
T Consensus 48 GnTpliri--~sLs-~a--------T-GcnIlaK~Ef~N-P-ggS~KDRvAl~iir~Aee~GkL~~gg~v~E-GtaGsTg 112 (391)
T KOG1481|consen 48 GNTPLIRI--NSLS-NA--------T-GCNILAKAEFLN-P-GGSVKDRVALYIIRTAEEKGKLVRGGTVVE-GTAGSTG 112 (391)
T ss_pred CCCceEEe--eccc-cc--------c-ccchhhhhhccC-C-CCChhhhhHHHHHHHHHHcCCcccCceEEe-cCCCccc
Confidence 99999999 8888 33 3 899999999999 7 799999999999999999987 344443 4889999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 156 TAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 156 ~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
+++|..|..+|++|+|+||++++.++ ..+++.+|| |..|+.....+.+..... |+|-+.+...
T Consensus 113 IslA~v~~a~Gyk~~I~mPddqs~eK---~~ile~LGA~V~rV~pa~i~dp~~yvn~-Arr~an~~~~------------ 176 (391)
T KOG1481|consen 113 ISLAHVARALGYKCHIYMPDDQSQEK---SDILEFLGAEVHRVPPAPIVDPNHYVNQ-ARRAANETPN------------ 176 (391)
T ss_pred hhHHHhhhhcCcceEEECCChHHHHH---HHHHHHhcceeeecCCcCccChhHHHHH-HHHHhhhccc------------
Confidence 99999999999999999999887543 446799999 999987666555544432 3332211100
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLG 313 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~ 313 (460)
+..+.+.| ..+|..|+.. ..||.++|.|||.|.. ..+|.+++.+|||||++|+.+.
T Consensus 177 -------------------~~ngi~g~-fAdQFeN~AN~~aHyetTGPEIw~Qtk---GniDaFia~~GTGGTiaGVsky 233 (391)
T KOG1481|consen 177 -------------------ASNGIRGW-FADQFENVANWLAHYETTGPEIWHQTK---GNIDAFIAGTGTGGTIAGVSKY 233 (391)
T ss_pred -------------------ccCCcccc-hhhhhcCHHHHHHHhcCcCcHHHHhhc---CCcceEEeccCCCcchHHHHHH
Confidence 00111222 3345566544 4589999999999984 4799999999999999999999
Q ss_pred HHhcCCC-CeEEEEeccCChh--------hHHHH---HH---hHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeE
Q 012606 314 AICLGLP-WEVTAIALVDTID--------GYKQQ---EK---NLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKF 378 (460)
Q Consensus 314 ~~~~g~~-~~vigVe~~g~~~--------~~~~~---~~---~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~ 378 (460)
+++..+. +.++-.+|-|+-- ++... .. ...+.+.+.||.+ ++. .+|....++.|+.+
T Consensus 234 Lkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGin-------RiT-~Nf~m~~~liD~a~ 305 (391)
T KOG1481|consen 234 LKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGIN-------RIT-GNFQMAEDLIDDAM 305 (391)
T ss_pred HhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhccccc-------ccc-cccccchhhhhhhe
Confidence 9987654 6777667766521 11000 00 0123344444432 222 46677788899999
Q ss_pred EeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHHHhccc
Q 012606 379 GNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSL 451 (460)
Q Consensus 379 ~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~~~~~~ 451 (460)
.++|++.++|.+.|..++|+|++.+ |+....|+.++++ .+.+|.+||.|+ ++...||+++|.+.
T Consensus 306 rv~Deqai~Msr~Ll~~dGLFvGsS-sa~N~VaAv~vAk-~LgpG~~iVtil-------CDsG~rh~sk~~~~ 369 (391)
T KOG1481|consen 306 RVTDEQAINMSRYLLDNDGLFVGSS-SALNCVAAVRVAK-TLGPGHTIVTIL-------CDSGSRHLSKLFSE 369 (391)
T ss_pred ecChHHHHHHHHHhhhcCceEecch-hhHHHHHHHHHHH-hcCCCceEEEEE-------eCCcchHHHHhcCH
Confidence 9999999999999999999999974 6777777777765 468899999999 55567888887554
No 83
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.92 E-value=5.4e-24 Score=207.90 Aligned_cols=316 Identities=15% Similarity=0.091 Sum_probs=201.2
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHH---HhcCCCeEEE-eCCccc
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL---EDHIVTDLVT-CGGCQS 152 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a---~~~g~~~VVt-~Gas~G 152 (460)
+|+||||++. .+|. +.++. .++||.|.|+.. | +||+| ++..|+|| +..|+++|+| +|+.|
T Consensus 75 ~gRPTPL~RA--~~LE-~~L~t-------parIYyK~Eg~t-p-tGSHK---iNTAlAqaYyak~eg~~rl~TETGAGQ- 138 (432)
T COG1350 75 IGRPTPLIRA--KNLE-EALGT-------PARIYYKYEGVT-P-TGSHK---INTALAQAYYAKKEGAKRLTTETGAGQ- 138 (432)
T ss_pred hCCCCchhhh--hhHH-HHhCC-------CcEEEEEecccC-C-CCCCC---cchHHHHHHHHHhcCceeeecccCCch-
Confidence 6899999999 9998 77764 789999999998 6 88855 45556764 8899999998 88866
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCC---CCccchhh
Q 012606 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNN---GDVVWCNE 228 (460)
Q Consensus 153 Nhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~---g~~~w~~~ 228 (460)
.|.|++.+|+.+|++|+|||-...-..+.-...+|++||+ |+.-++. .++..+ +.+.++. |.....
T Consensus 139 -WGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~-~Te~Gr------k~l~e~p~hPGSLGIA-- 208 (432)
T COG1350 139 -WGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSE-LTEFGR------KILKEDPDHPGSLGIA-- 208 (432)
T ss_pred -HHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcc-hhHHHH------HHHhcCCCCCchhHHH--
Confidence 9999999999999999999975432222123347899998 8776653 232111 1111111 111110
Q ss_pred hhHHHHHhhhhhhcccccccccccccc-cCCcEEEecCCCcchHHHHHHHH-HHHHHHHhHHcCCCCCCEEEEecCCchh
Q 012606 229 IFEASLTAQKSRASCLGQMDAHKGIDN-CRKKVLIVNEGAGDAVALLGVFR-LLQYLSQDHLLGRKRAIKFVVDAGTGTT 306 (460)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~y~ip~g~~np~~~~G~~t-~~~Ei~eq~~~~~~~pD~vvv~vGtGgt 306 (460)
+..+-+.+- .++.-|... +--..+.=++| +|+|..+|++.-+..||++|-|||||++
T Consensus 209 ------------------ISEAiE~al~~~~~kY~lG---SVlnhvllhQTViGlEakkQle~~~e~PDv~igcvGGGSN 267 (432)
T COG1350 209 ------------------ISEAIEYALKNENTKYSLG---SVLNHVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSN 267 (432)
T ss_pred ------------------HHHHHHHHHhCCCceecch---hHHHHHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCc
Confidence 111111221 222334332 11112222344 4799999986323579999999999999
Q ss_pred HHHHHHHHHh---cCC-CCeEEEEeccCChhhHHHHH-------HhHHHHH-HHHhccccccCCccc-------ccchhh
Q 012606 307 AVGLGLGAIC---LGL-PWEVTAIALVDTIDGYKQQE-------KNLISEF-KRLFGFLLKKSSLNE-------VDGEIV 367 (460)
Q Consensus 307 ~~Gl~~~~~~---~g~-~~~vigVe~~g~~~~~~~~~-------~~l~~~~-~~~i~~~~~p~~~~~-------~~~~~~ 367 (460)
++|+...|.. .|. ..++|+|++..++...+..- .++..-+ .-++|-+++|.++.. ..+..-
T Consensus 268 fag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls 347 (432)
T COG1350 268 FAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLS 347 (432)
T ss_pred cccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHH
Confidence 9999988853 232 38999999987764221100 0111100 023565555544321 111111
Q ss_pred HHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCC--CCCeEEEEecC-CCcchhhH
Q 012606 368 HWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLK--QDADVVMLHTG-GTLGMFGL 440 (460)
Q Consensus 368 ~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~--~g~~Vv~i~TG-G~~~~~~~ 440 (460)
.+++.-.-.......+|++++.+.+++.|||+--|- |+-|+.++.+.+.+... +.+.|+|=++| |..|+...
T Consensus 348 ~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPE-saHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y 422 (432)
T COG1350 348 LLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPE-SAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAY 422 (432)
T ss_pred HHHHcCcccceecChHHHHHHHHHHHHhcCCccCCc-chhhHHHHHHHHHhccccCceeEEEEeccCccccchhhH
Confidence 123333344566789999999999999999999997 67888888776643222 23456777999 99998873
No 84
>PRK09225 threonine synthase; Validated
Probab=99.92 E-value=2.3e-23 Score=219.11 Aligned_cols=279 Identities=14% Similarity=0.080 Sum_probs=182.7
Q ss_pred eEEEEeCCCCCCCCchhHHHhHHh---hHHHHHhcCCCeEEEeCCccchHHHHH-HHHHHHhCCeEEEEecCC-CCccch
Q 012606 108 CFYVVRDDLLHPLVNGNKARKMDA---LLPLLEDHIVTDLVTCGGCQSAHATAV-AVSCAERGLKSHLLLRGE-QPQILT 182 (460)
Q Consensus 108 ~l~lKrEdln~p~~GsnK~Rkl~~---~l~~a~~~g~~~VVt~Gas~GNhg~Al-A~aaa~~Gl~~~iv~p~~-~~~~~~ 182 (460)
++|+.--.++ | |+|||||.+.. ++..+.+.+..+|++ +|+||+|.|+ |+++++.|++|+|++|.. .+..
T Consensus 97 ~~~~lELfhG-P-T~sFKD~a~~~l~~~l~~a~~~~~~~Il~--ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~-- 170 (462)
T PRK09225 97 NLYVLELFHG-P-TLAFKDFALQFLAQLLEYVLKGEKITILG--ATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPV-- 170 (462)
T ss_pred CceeHhhccC-C-ccchhhhHHHHHHHHHHHHHhCCCcEEEE--cCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHH--
Confidence 5787544554 8 99999999988 788887733566665 5889999998 899999999999999985 5543
Q ss_pred hhhHHHHhC-Cc-E--EEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCC
Q 012606 183 GYNLISTIY-GK-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRK 258 (460)
Q Consensus 183 ~~~~~~~~~-Ga-V--~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (460)
+..+|..+ |+ | +.|++ +|++.....+.. ..++ ++.+. .
T Consensus 171 -q~~Qm~t~~g~nv~vi~V~G-~fDD~q~~vk~~----~~d~-------------------------------~~~~~-~ 212 (462)
T PRK09225 171 -QEKQMTTLQGDNIHVVAVEG-NFDDCQALVKAA----FNDE-------------------------------ELKEK-L 212 (462)
T ss_pred -HHHHHHhhcCCCeEEEEeCC-CHHHHHHHHHHH----hhch-------------------------------hhhhc-C
Confidence 34578888 86 5 77876 478765554321 1000 01111 1
Q ss_pred cEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCC-eEEEEeccCChhhHHH
Q 012606 259 KVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPW-EVTAIALVDTIDGYKQ 337 (460)
Q Consensus 259 ~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~-~vigVe~~g~~~~~~~ 337 (460)
..+..+ ..||..++|+++.+.|+.+|+......||.|+||+|.||++.|.+++ +++|..+ |+|+++-.. +.+..
T Consensus 213 ~l~saN--SiN~~Ri~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~n~n--~~l~~ 287 (462)
T PRK09225 213 KLSSAN--SINIGRLLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVATNEN--DVLTR 287 (462)
T ss_pred ceEEEe--ccCHHHHHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEecCC--hHHHH
Confidence 233332 25899999999999999999731112599999999999999999999 5588764 899987322 22211
Q ss_pred HHH-hH--HHHHHHHhcccc-c--cCCcccc-----c---chhhHHhh---hcCC---------------CeEEeCcHHH
Q 012606 338 QEK-NL--ISEFKRLFGFLL-K--KSSLNEV-----D---GEIVHWVE---RCRP---------------RKFGNVFEGE 385 (460)
Q Consensus 338 ~~~-~l--~~~~~~~i~~~~-~--p~~~~~~-----~---~~~~~l~~---~~~~---------------~~~~v~d~e~ 385 (460)
... +. ......++..++ + |..+.++ + .....+.+ ...+ ..+.|+|+|+
T Consensus 288 ~~~~G~y~~~~~~~T~s~amdI~~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei 367 (462)
T PRK09225 288 FLKTGVYDPRPTVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEET 367 (462)
T ss_pred HHHcCCCccCCCCCCcCchhhcCCCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHH
Confidence 110 00 000111222111 1 1111100 0 00111111 2233 5688999999
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhH
Q 012606 386 IEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGL 440 (460)
Q Consensus 386 ~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~ 440 (460)
.++++++++++|+++||. ||++++++.++. .++.++|++.|| |.+.....
T Consensus 368 ~~ai~~~~~~~G~~~dPh-tAva~aa~~~~~----~~~~~~V~l~Ta~p~Kf~~~v 418 (462)
T PRK09225 368 LATIREVYEEYGYLIDPH-TAVAYKAAREYL----DPGEPGVVLSTAHPAKFPEVV 418 (462)
T ss_pred HHHHHHHHHhCCEEECch-HHHHHHHHHHhh----CCCCCEEEEecCCccCCHHHH
Confidence 999999999999999997 889999997762 346789999999 76665443
No 85
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.91 E-value=8e-23 Score=215.13 Aligned_cols=280 Identities=15% Similarity=0.103 Sum_probs=183.4
Q ss_pred ceEEEEeCCCCCCCCchhHHHhHHhh---HHHHHhc--CCCeEEEeCCccchHHHH-HHHHHHHhCCeEEEEecCC-CCc
Q 012606 107 RCFYVVRDDLLHPLVNGNKARKMDAL---LPLLEDH--IVTDLVTCGGCQSAHATA-VAVSCAERGLKSHLLLRGE-QPQ 179 (460)
Q Consensus 107 ~~l~lKrEdln~p~~GsnK~Rkl~~~---l~~a~~~--g~~~VVt~Gas~GNhg~A-lA~aaa~~Gl~~~iv~p~~-~~~ 179 (460)
.++|++-..++ | |++||||.+..+ +..+.++ +..+|++ +|+||+|.| +|+++++.|++|+|++|.. .++
T Consensus 95 ~~~~~lELfhG-P-T~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~--ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~ 170 (460)
T cd01560 95 DNLYVLELFHG-P-TLAFKDMALQFLGRLLEYFLKRRNERITILV--ATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSP 170 (460)
T ss_pred CCcEEeeeeeC-C-CcchHHhHHHHHHHHHHHHHHhcCCCeEEEE--cCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCH
Confidence 36799888887 7 999999999865 6666554 6667776 588999999 5999999999999999985 554
Q ss_pred cchhhhHHHHhCCc----EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccc
Q 012606 180 ILTGYNLISTIYGK----VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDN 255 (460)
Q Consensus 180 ~~~~~~~~~~~~Ga----V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (460)
. +..+|..+|+ ++.|++ +|++.....+. +..+ . ++..
T Consensus 171 ~---Q~~Qm~t~g~~Nv~vi~V~G-~fDd~q~~vk~----~~~d------------~-------------------~~~~ 211 (460)
T cd01560 171 I---QELQMTTLPADNVHVVAVEG-DFDDCQSLVKA----LFAD------------E-------------------DFNK 211 (460)
T ss_pred H---HHHHHHhhCCCceEEEEEcC-CHHHHHHHHHH----HhcC------------h-------------------hhHh
Confidence 3 3457888982 777876 47876555432 1100 0 0111
Q ss_pred cCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcC-CCCCCEEEEecCCchhHHHHHHHHHhcCCC-CeEEEEeccCChh
Q 012606 256 CRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLG-RKRAIKFVVDAGTGTTAVGLGLGAICLGLP-WEVTAIALVDTID 333 (460)
Q Consensus 256 ~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~-~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~-~~vigVe~~g~~~ 333 (460)
....+..+ ..||..++|+++...|+.+|+..+ ...||.|+||+|.||++.|.+++.+ +|.+ .++|++.-+.+..
T Consensus 212 -~~~l~saN--SiN~~Ri~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~-mGlpi~kli~a~n~n~il 287 (460)
T cd01560 212 -KLKLSSAN--SINWARILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKK-MGLPIKKLIVATNENDVL 287 (460)
T ss_pred -cceEEEEe--ccCHHHHHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHH-cCCCCccEEEEeCCChHH
Confidence 11223222 358889999999999999997311 1268999999999999999999976 7875 4888865443321
Q ss_pred h-H-HHHHHhHHHHHHHHhcccc-ccCCcccccchhhHHhhhcCC------------------------------CeEEe
Q 012606 334 G-Y-KQQEKNLISEFKRLFGFLL-KKSSLNEVDGEIVHWVERCRP------------------------------RKFGN 380 (460)
Q Consensus 334 ~-~-~~~~~~l~~~~~~~i~~~~-~p~~~~~~~~~~~~l~~~~~~------------------------------~~~~v 380 (460)
. + .............++..++ ++.+.+ .+..+..+....+ ..+.|
T Consensus 288 ~~~~~~G~y~~~~~~~~T~spamdI~~psn--~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~v 365 (460)
T cd01560 288 RRFFKTGRYDRRESLKQTLSPAMDILKSSN--FERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSV 365 (460)
T ss_pred HHHHHcCCCcCCCCCCCCcCchhhcCCCCC--HHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEE
Confidence 1 1 1110000001111222111 111100 0111111222222 45789
Q ss_pred CcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhh
Q 012606 381 VFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFG 439 (460)
Q Consensus 381 ~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~ 439 (460)
+|+|+.++++++++++|+++||. ||++++++.++.++ ++.++|++.|| |.+....
T Consensus 366 sD~ei~~~i~~~~~~~G~~vdPh-tAva~aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~ 421 (460)
T cd01560 366 SDEETLETIREVYEETGYLIDPH-TAVGVRAAERVRKS---PGTPGVVLSTAHPAKFPEA 421 (460)
T ss_pred CHHHHHHHHHHHHHhcCEEECch-HHHHHHHHHHHHhc---cCCCEEEEecCCcccCHHH
Confidence 99999999999999999999997 89999999876543 35688999999 6665444
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.62 E-value=2.1e-14 Score=139.93 Aligned_cols=292 Identities=14% Similarity=0.120 Sum_probs=191.4
Q ss_pred ceEEEEeCCCCCCCCchhHHHhHHh-hHHHH----HhcCC--------------------CeEEEeCCccchHHHHHHHH
Q 012606 107 RCFYVVRDDLLHPLVNGNKARKMDA-LLPLL----EDHIV--------------------TDLVTCGGCQSAHATAVAVS 161 (460)
Q Consensus 107 ~~l~lKrEdln~p~~GsnK~Rkl~~-~l~~a----~~~g~--------------------~~VVt~Gas~GNhg~AlA~a 161 (460)
.++|+|+|... |..||.|+|+-.| +|..| .+.|. +--|..| |+||.|.++-..
T Consensus 101 G~llLK~DshL-pIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVG-STGNLGlSIGI~ 178 (443)
T COG3048 101 GRLLLKKDSHL-PISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVG-STGNLGLSIGIM 178 (443)
T ss_pred cceeeeccCCC-CcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeec-ccCccceehhhh
Confidence 48999999998 6579999998544 44444 34443 1234445 789999999999
Q ss_pred HHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhh
Q 012606 162 CAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240 (460)
Q Consensus 162 aa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~ 240 (460)
.|.+|++++|.|..+.- .-+...+|..|- |+.... +|.. +.++ |
T Consensus 179 sA~lGF~vtVHMSADAr---~WKKd~LRs~gV~ViEYe~-DY~~---AVee---------G------------------- 223 (443)
T COG3048 179 SAALGFKVTVHMSADAR---AWKKDKLRSHGVTVVEYEQ-DYGV---AVEE---------G------------------- 223 (443)
T ss_pred hhhhcceEEEEecchHH---HHHHHHHHhcCceEEEecc-hhhH---HHHH---------h-------------------
Confidence 99999999999998652 223345688994 766554 3542 2211 1
Q ss_pred hcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHH-cC----CCCCCEEEEecCCchhHHHHHHHHH
Q 012606 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-LG----RKRAIKFVVDAGTGTTAVGLGLGAI 315 (460)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~-~~----~~~pD~vvv~vGtGgt~~Gl~~~~~ 315 (460)
++.++..|..|+|-.-.+ -.--.||.-.+.-|..|+. .+ ...|-.|.+|||-||--.|++-|+|
T Consensus 224 ----------Rk~a~~DP~c~FiDDE~S-~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLK 292 (443)
T COG3048 224 ----------RKEAESDPNCFFIDDENS-RTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLK 292 (443)
T ss_pred ----------hhhhccCCceEEecccch-hhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhH
Confidence 112345677788843322 2345799878888988884 22 1246679999999999999999998
Q ss_pred h-cCCCCeEEEEeccCChhhHHHHHHhHHHHHH-HHhcccc----ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHH
Q 012606 316 C-LGLPWEVTAIALVDTIDGYKQQEKNLISEFK-RLFGFLL----KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (460)
Q Consensus 316 ~-~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~-~~i~~~~----~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (460)
. .+.++.++-+||.-++.++.....++-+.+. +-||.+- .+..+.++..-.-.+.++..++.|+|+|+..++..
T Consensus 293 l~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL 372 (443)
T COG3048 293 LAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLL 372 (443)
T ss_pred hhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHH
Confidence 5 4778999999998888765432222211110 0011100 01122222222224567778889999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhh--------cC----CCCCeEEEEecCCCcchhhHHHHHHHH
Q 012606 390 HRIAQLTGILVDPVYTLAAWEMATLLSDE--------KL----KQDADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 390 r~La~~eGI~vEP~ysgaa~Aal~~~~~~--------~~----~~g~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
++|++.|||.+||+ +-+++++..++.+. .+ -.+.+-++|-|||..-...--+.|..+
T Consensus 373 ~~L~~~e~~rlEPS-alAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MVPeeeM~~yl~~ 441 (443)
T COG3048 373 GWLAQEEGIRLEPS-ALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMVPEEEMEAYLAK 441 (443)
T ss_pred HHHHHhcCcccCch-hhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcCCHHHHHHHHhc
Confidence 99999999999995 55666665554311 01 124566899999877666655666543
No 87
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=64.13 E-value=12 Score=35.02 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 150 CQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 150 s~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
|+|-.|.++|-+|..+|.+++++....
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 779999999999999999999998764
No 88
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.09 E-value=17 Score=32.73 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.9
Q ss_pred eCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 147 ~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.|+ ||.|.|+|...+..|.+++++.++.
T Consensus 5 iGa--G~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 5 IGA--GNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp ESS--SHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred ECc--CHHHHHHHHHHHHcCCEEEEEeccH
Confidence 565 8999999999999999999998863
No 89
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=55.06 E-value=33 Score=32.36 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=31.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccC
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g 330 (460)
+.|+.+++.+|.|+-..++-.+ ..+|..+||++|...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~ 68 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDE 68 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCH
Confidence 5788899999999999888877 368999999999754
No 90
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=53.05 E-value=39 Score=26.41 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=27.1
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~ 178 (460)
|+..|| |..|.-+|.+.+.+|.+++++.+...+
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 444565 789999999999999999999887543
No 91
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=52.20 E-value=36 Score=31.85 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 133 LPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 133 l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
....++.|.++||.+|-.+-+.-.++|..|..+|++++++.....
T Consensus 130 ~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~ 174 (196)
T cd01011 130 AEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACR 174 (196)
T ss_pred HHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccC
Confidence 344467899999988755544455788888999999999887654
No 92
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=51.72 E-value=18 Score=34.60 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=31.0
Q ss_pred cCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 139 HIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 139 ~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
+-+++|..++|-+|.+-.+||.+|++.|+++.|++....
T Consensus 40 REATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~ 78 (207)
T PF11814_consen 40 REATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDG 78 (207)
T ss_pred HHhceecccCCCCCcChHHHHHHHHHcCCceEEEECCCC
Confidence 445788755556677888999999999999999998654
No 93
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=45.93 E-value=3.5e+02 Score=27.80 Aligned_cols=45 Identities=9% Similarity=-0.049 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEE
Q 012606 275 GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAI 326 (460)
Q Consensus 275 G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigV 326 (460)
.|.+....|.+. .||.|++. +.|+....+.+.+++.|.++++++.
T Consensus 176 Df~~~l~~i~~~------~pD~V~~~-~~g~~~~~~~kq~~~~G~~~~~~~~ 220 (374)
T TIGR03669 176 QFSSTIQNIQKA------DPDFVMSM-LVGANHASFYEQAASANLNLPMGTS 220 (374)
T ss_pred hHHHHHHHHHHc------CCCEEEEc-CcCCcHHHHHHHHHHcCCCCcccch
Confidence 344444555432 68998874 4445566788888888888777643
No 94
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=45.71 E-value=74 Score=28.45 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=33.9
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~ 178 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++++......
T Consensus 83 L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as 125 (157)
T cd01012 83 LKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGS 125 (157)
T ss_pred HHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCC
Confidence 3578999999888666556678888999999999998876543
No 95
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=44.90 E-value=86 Score=29.51 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=33.6
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||.+|-.+-..-.++|.-|..+|++++|+-....
T Consensus 137 L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a 178 (212)
T PRK11609 137 LREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCR 178 (212)
T ss_pred HHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccC
Confidence 357899999988865555566889999999999999887654
No 96
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=41.01 E-value=56 Score=35.63 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~Al 158 (460)
|.|||.-+ .+- +.+ | -||+|. .-.| |.|-|- .+.+++|.++|.++| -|+-.|
T Consensus 426 GGTPL~V~--~~~--~~~---------G-VI~LkD--ivK~---Gi~ERf-----~elR~MgIkTvM~TG---DN~~TA- 477 (681)
T COG2216 426 GGTPLVVV--ENG--RIL---------G-VIYLKD--IVKP---GIKERF-----AELRKMGIKTVMITG---DNPLTA- 477 (681)
T ss_pred CCCceEEE--ECC--EEE---------E-EEEehh--hcch---hHHHHH-----HHHHhcCCeEEEEeC---CCHHHH-
Confidence 88999887 542 333 2 488884 4335 578885 567999999999876 576544
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCc
Q 012606 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH 201 (460)
Q Consensus 159 A~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~ 201 (460)
|+.|+..|+.-.+ -+..|+.+..-...-+.-|. |-.++.+.
T Consensus 478 a~IA~EAGVDdfi--AeatPEdK~~~I~~eQ~~grlVAMtGDGT 519 (681)
T COG2216 478 AAIAAEAGVDDFI--AEATPEDKLALIRQEQAEGRLVAMTGDGT 519 (681)
T ss_pred HHHHHHhCchhhh--hcCChHHHHHHHHHHHhcCcEEEEcCCCC
Confidence 6778889987543 35556544332233455666 66666554
No 97
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=40.56 E-value=4.1e+02 Score=26.96 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=29.3
Q ss_pred hhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 131 ALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 131 ~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
..+..+..++.+.||... ...+.....--.|...|++++.+-..
T Consensus 71 ~~i~~li~~~vdgIiv~~-~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 71 QLINNFVNQGYNAIIVSA-VSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 456777788999888742 33343344555577889998887543
No 98
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=40.50 E-value=60 Score=31.12 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=34.7
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|+++||.+|-++-..-.++|.-|..+|++++|+-....
T Consensus 146 Lr~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a 187 (226)
T TIGR03614 146 LRARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATH 187 (226)
T ss_pred HHHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhcc
Confidence 467899999988866666667889999999999999887644
No 99
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=37.48 E-value=72 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 135 ~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
..++.|.++|+.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 93 ~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~ 135 (155)
T cd01014 93 WLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACA 135 (155)
T ss_pred HHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEeccccc
Confidence 3467889999988877767778999999999999998776543
No 100
>PRK08813 threonine dehydratase; Provisional
Probab=37.46 E-value=4.8e+02 Score=26.94 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=23.8
Q ss_pred EEecCCchhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 012606 298 VVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (460)
Q Consensus 298 vv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~ 332 (460)
|+++.+|.+..+++.+-+.+|.+. +-|.|...+
T Consensus 84 VV~aSsGN~G~alA~aa~~~Gi~~--~IvvP~~~~ 116 (349)
T PRK08813 84 VICASAGNHAQGVAWSAYRLGVQA--ITVMPHGAP 116 (349)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCE--EEEEcCCCC
Confidence 677788999889988888777544 445565544
No 101
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=37.29 E-value=1.1e+02 Score=28.98 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=38.1
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccch---hhhHHHHhCCc
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILT---GYNLISTIYGK 193 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~---~~~~~~~~~Ga 193 (460)
.++.|.++||.+|-.+...-.++|.-+..+|++++|+........+. ..+..|+..|+
T Consensus 141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~ 201 (212)
T PTZ00331 141 LKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGV 201 (212)
T ss_pred HHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCC
Confidence 35679999998875543444578888999999999987764432211 11234566775
No 102
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.93 E-value=60 Score=35.06 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=31.9
Q ss_pred cCCCeEEEeCC--------------ccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 139 HIVTDLVTCGG--------------CQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 139 ~g~~~VVt~Ga--------------s~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.|++-+||.|+ |||=.|.++|.+|+.+|-+++++...
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 56677788777 78999999999999999999999854
No 103
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=35.36 E-value=83 Score=28.76 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||-+|-.+-..-.++|..|..+|++++++-....
T Consensus 109 L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a 150 (179)
T cd01015 109 LTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVG 150 (179)
T ss_pred HHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeecccc
Confidence 367899999988755533445889999999999998877644
No 104
>PRK12743 oxidoreductase; Provisional
Probab=35.10 E-value=2.9e+02 Score=26.17 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.1
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
+-+| +|+ +|.-|.++|...+..|.+.+++..
T Consensus 4 ~vlI-tGa-s~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 4 VAIV-TAS-DSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred EEEE-ECC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 3444 464 467999999999999998876654
No 105
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.56 E-value=67 Score=24.65 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHhCCeEEEEecC
Q 012606 152 SAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 152 GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|=.|.+.|+..++.|++++|+=..
T Consensus 5 G~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 5 GISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CHHHHHHHHHHHHCCCcEEEEecC
Confidence 668999999999999999888443
No 106
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=34.46 E-value=87 Score=25.26 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=23.9
Q ss_pred CCCCchhHHHhHHhhHHHHHh----cCCCeEEEeCCccchHHHHHHHHHH-HhCCeEEEEecCC
Q 012606 118 HPLVNGNKARKMDALLPLLED----HIVTDLVTCGGCQSAHATAVAVSCA-ERGLKSHLLLRGE 176 (460)
Q Consensus 118 ~p~~GsnK~Rkl~~~l~~a~~----~g~~~VVt~Gas~GNhg~AlA~aaa-~~Gl~~~iv~p~~ 176 (460)
|| .|- .+-....+...+. .|.++|...|+|+| .|.|...+++ ..|-..+-|.-+.
T Consensus 15 HP-~GC--~~~V~~qI~yvk~~~~~~GpK~VLViGaStG-yGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 15 HP-VGC--ARNVENQIEYVKSQGKINGPKKVLVIGASTG-YGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp -H-HHH--HHHHHHHHHHHHHC---TS-SEEEEES-SSH-HHHHHHHHHHHCC--EEEEEE---
T ss_pred Cc-HHH--HHHHHHHHHHHHhcCCCCCCceEEEEecCCc-ccHHHHHHHHhcCCCCEEEEeecc
Confidence 56 454 2233444444444 55567766776543 5555445444 3444555454443
No 107
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=34.45 E-value=1.3e+02 Score=31.28 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHHHHHHHH---HHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccC
Q 012606 272 ALLGVFRLL---QYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (460)
Q Consensus 272 ~~~G~~t~~---~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g 330 (460)
+.+.|.+++ .-|++.. -+--|.||+.||.|+.+..++.+.. | .-+|++||+..
T Consensus 155 MmQDYVRTgTY~~Ail~N~---sDF~~kiVlDVGaGSGILS~FAaqA--G-A~~vYAvEAS~ 210 (517)
T KOG1500|consen 155 MMQDYVRTGTYQRAILENH---SDFQDKIVLDVGAGSGILSFFAAQA--G-AKKVYAVEASE 210 (517)
T ss_pred HHHHHHhhhHHHHHHHhcc---cccCCcEEEEecCCccHHHHHHHHh--C-cceEEEEehhH
Confidence 456676665 3344443 1245899999999997776665543 3 56899999855
No 108
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=34.23 E-value=1.7e+02 Score=29.71 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=45.1
Q ss_pred CceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC---CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV---TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 106 g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~---~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
+..||==+-|..||. -.+.-++.--+..|. .+++..|.. .|-+.++-.+|+++|+.++|..|...
T Consensus 121 ~VPViNgLtD~~HP~------Q~LADl~Ti~E~~g~l~g~k~a~vGDg-NNv~nSl~~~~a~~G~dv~ia~Pk~~ 188 (310)
T COG0078 121 GVPVINGLTDEFHPC------QALADLMTIKEHFGSLKGLKLAYVGDG-NNVANSLLLAAAKLGMDVRIATPKGY 188 (310)
T ss_pred CCceEcccccccCcH------HHHHHHHHHHHhcCcccCcEEEEEcCc-chHHHHHHHHHHHhCCeEEEECCCcC
Confidence 456777777777882 223222222233442 567777754 89999999999999999999999765
No 109
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=33.49 E-value=75 Score=28.48 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=32.1
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.++.|.++||-+|-.+...-.++|..|..+|++++|+....
T Consensus 107 L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~ 147 (174)
T PF00857_consen 107 LRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDAC 147 (174)
T ss_dssp HHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred ccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhh
Confidence 46789999998886665566788999999999999987653
No 110
>PRK11440 putative hydrolase; Provisional
Probab=33.46 E-value=91 Score=28.72 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=33.6
Q ss_pred HhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 137 ~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
++.|.++||.+|-.+-..-.++|.-|..+|++++++.....
T Consensus 117 ~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~a 157 (188)
T PRK11440 117 RRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACS 157 (188)
T ss_pred HHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhc
Confidence 57899999988876656677899999999999998876543
No 111
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=32.91 E-value=1.6e+02 Score=25.96 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||-+|-.+...-.++|.-|..+|++++|+.....
T Consensus 105 L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~vi~Da~~ 146 (161)
T cd00431 105 LRERGIDTLVVCGIATDICVLATARDALDLGYRVIVVEDACA 146 (161)
T ss_pred HHHCCCCEEEEEecCcChhHHHHHHHHHHCCCEEEEehhhcc
Confidence 366788999988866666666788888889999998876543
No 112
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=32.20 E-value=71 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=28.5
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
+|...|-..+|.+.+++..++++|+.++++.|..
T Consensus 4 ~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 4 KIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred EEEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 3555665458999999999999999999998876
No 113
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=31.00 E-value=1.4e+02 Score=28.05 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=33.9
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~ 178 (460)
.++.|.++||-+|-.+-+.-.++|.-|..+|++++|+-.....
T Consensus 137 Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as 179 (203)
T cd01013 137 LKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIAD 179 (203)
T ss_pred HHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccCC
Confidence 3678999999888666556678899999999999887766443
No 114
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=30.53 E-value=62 Score=34.14 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=21.8
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
||-+|| |=.|.+.|.+||+.|.++.++=+..
T Consensus 2 VVVvGg--G~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGG--GPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE----SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECc--cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 444566 5599999999999999998886543
No 115
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=30.44 E-value=60 Score=33.66 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=22.5
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
||..|+ |.+|.+.|..|+..|.+++|+=..
T Consensus 2 VvVIG~--G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 2 VVVIGG--GLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EEEE-S--SHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EEEECC--CHHHHHHHHHHhhhcCeEEEEEee
Confidence 344565 889999999999999988887544
No 116
>PRK06847 hypothetical protein; Provisional
Probab=29.74 E-value=68 Score=32.56 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=24.6
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
.|+-.|| |-.|.++|..+++.|++++|+=.
T Consensus 6 ~V~IVGa--G~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGG--GIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEec
Confidence 4555676 77999999999999999988843
No 117
>PRK06202 hypothetical protein; Provisional
Probab=28.69 E-value=68 Score=30.54 Aligned_cols=36 Identities=33% Similarity=0.254 Sum_probs=24.8
Q ss_pred CEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccC
Q 012606 295 IKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (460)
Q Consensus 295 D~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g 330 (460)
..+=+++|+|....-+...++..++..+|+||++..
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~ 98 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP 98 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 345566677766555555555567788999999865
No 118
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=28.45 E-value=99 Score=33.15 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHcCCC----CCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccC
Q 012606 275 GVFRLLQYLSQDHLLGRK----RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (460)
Q Consensus 275 G~~t~~~Ei~eq~~~~~~----~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g 330 (460)
=|.....+...+...... ....++|.+|+|-+..-.+++.+..+...+|++||...
T Consensus 165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 355555555555421110 12344555555555555555555566689999999744
No 119
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=27.65 E-value=1e+02 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=30.3
Q ss_pred eCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhh
Q 012606 380 NVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSD 417 (460)
Q Consensus 380 v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~ 417 (460)
|+++|+.+++..+++..+-.+||- ||.++-...+...
T Consensus 151 vS~ee~~~ti~k~yes~~YiLdPH-TAVav~~~~r~id 187 (266)
T KOG2616|consen 151 VSNEETTQTIKKIYESNHYILDPH-TAVAVNYHYRQID 187 (266)
T ss_pred cCcHHHHHHHHHHhccCCeeecCc-hHHHHHHHHHHHh
Confidence 789999999999999999999996 7766655554443
No 120
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=27.49 E-value=83 Score=33.16 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
||..|| |-+|...|+++|++|.++.++..
T Consensus 2 ViVVGg--G~AG~eAA~aaAr~G~~V~Lit~ 30 (392)
T PF01134_consen 2 VIVVGG--GHAGCEAALAAARMGAKVLLITH 30 (392)
T ss_dssp EEEESS--SHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEee
Confidence 444576 66999999999999999999943
No 121
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=27.37 E-value=99 Score=28.55 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.4
Q ss_pred eCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 147 CGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 147 ~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.|+ |..|.++|+.++..|++++++-+.
T Consensus 5 iGa--G~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGA--GTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES---SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 465 789999999999999999999664
No 122
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.26 E-value=93 Score=32.70 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 150 CQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 150 s~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|||-.|.++|..+...|.+++++...
T Consensus 209 SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 209 SSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 67889999999999999999988754
No 123
>PRK09126 hypothetical protein; Provisional
Probab=26.14 E-value=78 Score=32.41 Aligned_cols=30 Identities=33% Similarity=0.405 Sum_probs=24.1
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|+-.|| |=.|.++|.+.++.|++++|+=..
T Consensus 6 viIvGg--G~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 6 IVVVGA--GPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 444565 779999999999999999888544
No 124
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=25.98 E-value=94 Score=30.62 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=24.2
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
|+-.|| |=.|.++|.+.++.|++++||=....
T Consensus 4 V~IvGa--G~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 4 VAIVGA--GPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEE----SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEECC--CHHHHHHHHHHHhcccccccchhccc
Confidence 444565 66999999999999999998866543
No 125
>PLN02743 nicotinamidase
Probab=25.47 E-value=1.1e+02 Score=29.79 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=32.5
Q ss_pred HHhcCCCeEEEeCCccchHHH----HHHHHHHHhCC-----eEEEEecCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHAT----AVAVSCAERGL-----KSHLLLRGE 176 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~----AlA~aaa~~Gl-----~~~iv~p~~ 176 (460)
.++.|+++||-+| ...|.|+ ++|.-|..+|+ +++++-...
T Consensus 146 Lr~~gI~~liv~G-v~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~ 194 (239)
T PLN02743 146 VNNNKIKVILVVG-ICTDICVLDFVASALSARNHGILPPLEDVVVYSRGC 194 (239)
T ss_pred HHHCCCCEEEEEE-eCcchhccChHHHHHHHHHcCCCCCCceEEEeCCcc
Confidence 4678999999876 6678998 89999999999 677765543
No 126
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=25.06 E-value=5.5e+02 Score=25.94 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=36.2
Q ss_pred CeEEEeCCcc-chHHHHHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEe
Q 012606 142 TDLVTCGGCQ-SAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYV 197 (460)
Q Consensus 142 ~~VVt~Gas~-GNhg~AlA~aaa~~Gl~~~iv~p~~~-~~~~~~~~~~~~~~Ga-V~~v 197 (460)
.+|...|-.. +|.+.+++.+++++|++++++.|..- ++. .....++.+|. +...
T Consensus 151 ~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~--~~~~~~~~~G~~v~~~ 207 (301)
T TIGR00670 151 LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPK--EILEELKAKGIKVRET 207 (301)
T ss_pred CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCH--HHHHHHHHcCCEEEEE
Confidence 3555566432 79999999999999999999999764 221 11123345675 6554
No 127
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=24.98 E-value=64 Score=26.16 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=20.3
Q ss_pred EecCCchhHHHHHHHHHhcCCCCeEEEEeccC
Q 012606 299 VDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (460)
Q Consensus 299 v~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g 330 (460)
+++|+|..+.-+...+ ..+++.+++||+...
T Consensus 4 lgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~ 34 (101)
T PF13649_consen 4 LGCGTGRVTRALARRF-DAGPSSRVIGVDISP 34 (101)
T ss_dssp ET-TTSHHHHHHHHHS------SEEEEEES-H
T ss_pred eecCCcHHHHHHHHHh-hhcccceEEEEECCH
Confidence 5788999888888777 456779999999754
No 128
>PRK06753 hypothetical protein; Provisional
Probab=24.34 E-value=97 Score=31.44 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 3 V~IvGg--G~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 3 IAIIGA--GIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 444565 779999999999999998887443
No 129
>PRK08198 threonine dehydratase; Provisional
Probab=24.31 E-value=5.1e+02 Score=26.96 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 012606 294 AIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (460)
Q Consensus 294 pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~ 332 (460)
.+.||. +++|-+..|++...+.+|.+ .+-|.|...+
T Consensus 70 ~~~vv~-aSsGN~g~alA~~a~~~G~~--~~iv~p~~~~ 105 (404)
T PRK08198 70 ARGVVA-ASAGNHAQGVAYAASLLGIK--ATIVMPETAP 105 (404)
T ss_pred CCEEEE-ECCCHHHHHHHHHHHHcCCC--EEEEECCCCC
Confidence 355554 56788888888887777754 5555666543
No 130
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=24.30 E-value=1.2e+02 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
|--.||.| .|..+|.+|+++|++++++-|...
T Consensus 4 vgIlGGGQ--LgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 4 VGILGGGQ--LGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EEEEcCcH--HHHHHHHHHHhcCCEEEEecCCCC
Confidence 33357766 999999999999999999988644
No 131
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=24.25 E-value=8.7e+02 Score=25.72 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=23.3
Q ss_pred EEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCc
Q 012606 261 LIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTG 304 (460)
Q Consensus 261 y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtG 304 (460)
..++.+..++.. ...+..++.+++ ..+|.+|-++|.+
T Consensus 106 ~~i~~DVss~E~---v~~lie~I~e~~----G~IDiLVnSaA~~ 142 (398)
T PRK13656 106 KSINGDAFSDEI---KQKVIELIKQDL----GQVDLVVYSLASP 142 (398)
T ss_pred EEEEcCCCCHHH---HHHHHHHHHHhc----CCCCEEEECCccC
Confidence 345555555543 334556666653 3689999999887
No 132
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=24.13 E-value=89 Score=33.84 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=24.2
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
||-.|| |-+|.++|.-+++.|+++.++=..
T Consensus 9 VvIIGG--Gi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 9 LLVIGG--GINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred EEEECc--CHHHHHHHHHHHHCCCeEEEEecC
Confidence 444565 789999999999999998877543
No 133
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=24.06 E-value=1.1e+02 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=24.1
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+-.|| |-.|.++|.+.++.|++++||=.
T Consensus 6 v~IvGg--G~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 6 IAVVGG--GMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEcC
Confidence 444565 88999999999999999998853
No 134
>PLN02621 nicotinamidase
Probab=23.82 E-value=2.5e+02 Score=26.18 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=32.7
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~ 178 (460)
.++.|.++||.+|-.+-..-.++|..|..+|++++++......
T Consensus 122 L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~v~~Da~as 164 (197)
T PLN02621 122 LRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATAT 164 (197)
T ss_pred HHHCCCCEEEEEecccchhHHHHHHHHHHCCCEEEEeccccCC
Confidence 3678899999887555445567788899999999998876543
No 135
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=23.60 E-value=96 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=23.0
Q ss_pred EeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 146 TCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 146 t~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
-+|+ |.-+.++|-.|+.+|++++++=|.
T Consensus 3 I~Ga--G~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 3 IFGA--GHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EES---STCHHHHHHHHHHCTEEEEEEES-
T ss_pred EEeC--cHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3565 678999999999999999999776
No 136
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=23.54 E-value=4e+02 Score=26.04 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=48.4
Q ss_pred CcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhhH-H
Q 012606 258 KKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGY-K 336 (460)
Q Consensus 258 ~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~-~ 336 (460)
.+.+++|....+..........+.+..++.. .++. ++++|.|.|+.-+...+.. .....+.-|+..|..... .
T Consensus 20 k~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~l----~~~~-~iGv~wG~Tl~~~~~~l~~-~~~~~~~vV~l~Gg~~~~~~ 93 (255)
T PF04198_consen 20 KEVIVVPSPSDDEDILESLGEAAAEYLSELL----KDGD-VIGVGWGRTLYAVANHLPP-KSLPNVTVVPLIGGVGNSNS 93 (255)
T ss_dssp SEEEEESSSTTTHHHHHHHHHHHHHHHHHH------TTE-EEEE-TSHHHHHHHHTS---SSSSCEEEEESBSBTTTSSG
T ss_pred CEEEEecCCCChHHHHHHHHHHHHHHHHHhC----CCCC-EEEEcchHHHHHHHHhcCc-cCCCCcEEEECCCCCCCCCC
Confidence 3578888765443222222223333333331 2233 8899999999999888765 445567778888765321 1
Q ss_pred HHHHhHHHHHHHHhccc
Q 012606 337 QQEKNLISEFKRLFGFL 353 (460)
Q Consensus 337 ~~~~~l~~~~~~~i~~~ 353 (460)
.....++..+++.++..
T Consensus 94 ~~~~~i~~~lA~~~g~~ 110 (255)
T PF04198_consen 94 YQANEIARRLAEKLGGK 110 (255)
T ss_dssp GSHHHHHHHHHHHHTSE
T ss_pred cCHHHHHHHHHHHhCCc
Confidence 12223555666666543
No 137
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=23.45 E-value=2.7e+02 Score=28.29 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=29.0
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
+|...| -.+|.+.+++.+++++|++++++.|...
T Consensus 155 ~va~vG-d~~rv~~Sl~~~~~~~G~~v~~~~P~~~ 188 (311)
T PRK14804 155 QLTYIG-VHNNVVNSLIGITAALGIHLTLVTPIAA 188 (311)
T ss_pred EEEEEC-CCCcHHHHHHHHHHHcCCEEEEECCCCc
Confidence 555566 4689999999999999999999999764
No 138
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=22.89 E-value=6e+02 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=23.7
Q ss_pred EEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 012606 297 FVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (460)
Q Consensus 297 vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~ 332 (460)
-|+++.+|-+..|++.+-+.+|. +++-|.|...+
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~--~~~IvvP~~~~ 169 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGF--KVTVHMSADAK 169 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCC--CEEEEECCCCc
Confidence 46677888888888888887764 44545565544
No 139
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=22.81 E-value=2.8e+02 Score=28.37 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=37.0
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEe
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYV 197 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v 197 (460)
+.||--|+ .|--|+++-..|+.+||+.+=++++.+.-+. .+ .+++.+|| .++.
T Consensus 162 D~vIQNga-nS~VG~~ViQlaka~GiktinvVRdR~~iee-l~-~~Lk~lGA~~ViT 215 (354)
T KOG0025|consen 162 DSVIQNGA-NSGVGQAVIQLAKALGIKTINVVRDRPNIEE-LK-KQLKSLGATEVIT 215 (354)
T ss_pred CeeeecCc-ccHHHHHHHHHHHHhCcceEEEeecCccHHH-HH-HHHHHcCCceEec
Confidence 57776543 3457889999999999999999987543222 22 24578998 5543
No 140
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=22.62 E-value=2e+02 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=27.3
Q ss_pred HHHHHhHHcCCCCCCEEE-EecCCchhHHHHHHHHHhcCCCCeEEEEecc
Q 012606 281 QYLSQDHLLGRKRAIKFV-VDAGTGTTAVGLGLGAICLGLPWEVTAIALV 329 (460)
Q Consensus 281 ~Ei~eq~~~~~~~pD~vv-v~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~ 329 (460)
+||..++ +||.|+ ..+=.||.+.=.+.-+..++.+.+|+||+..
T Consensus 25 qeli~~~-----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 25 QELIWEL-----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHH-------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHh-----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 7777775 578765 4555677777666667777888999999984
No 141
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=22.28 E-value=93 Score=31.80 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=24.9
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.||-.|+ |-.|.++|.+.++.|++++|+=..
T Consensus 9 dViIVGa--G~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 9 DIAVIGG--GPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CEEEECc--CHHHHHHHHHHhcCCCeEEEEeCC
Confidence 3555566 789999999999999999887543
No 142
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.23 E-value=1.2e+02 Score=31.98 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 150 CQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 150 s~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|+|-.|.++|.+++..|.+++++...
T Consensus 212 SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 67889999999999999999888654
No 143
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.09 E-value=2.5e+02 Score=27.23 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=31.8
Q ss_pred hHHhhHHHHHhcCCC----eEEEeCCc--cchHHHHHHHHHHHhCCe---EEEEecCCC
Q 012606 128 KMDALLPLLEDHIVT----DLVTCGGC--QSAHATAVAVSCAERGLK---SHLLLRGEQ 177 (460)
Q Consensus 128 kl~~~l~~a~~~g~~----~VVt~Gas--~GNhg~AlA~aaa~~Gl~---~~iv~p~~~ 177 (460)
.+..++..+++.+.+ ++++-||- .=+|-.+++-.|+..|++ .|+++.+.+
T Consensus 15 ~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRD 73 (223)
T PF06415_consen 15 VLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRD 73 (223)
T ss_dssp HHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSS
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCC
Confidence 355566666655532 45566663 446999999999999987 688887644
No 144
>PRK05868 hypothetical protein; Validated
Probab=22.07 E-value=1.2e+02 Score=31.30 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=23.6
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+-.|| |-.|.++|...++.|++++|+=.
T Consensus 4 V~IvGg--G~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 4 VVVSGA--SVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCCEEEEcC
Confidence 444565 78999999999999999988843
No 145
>PRK09620 hypothetical protein; Provisional
Probab=22.04 E-value=1.4e+02 Score=28.89 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 150 CQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 150 s~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|+|=.|.++|-++...|.+++++...
T Consensus 27 SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 27 AKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 67889999999999999999888653
No 146
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=21.92 E-value=1.1e+02 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+-.|| |-.|.+.|..+++.|++++++=.
T Consensus 3 vvIIG~--G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 3 VIIIGA--GPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEec
Confidence 444566 67999999999999999888754
No 147
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=21.86 E-value=1.8e+02 Score=26.43 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC---CCcchhhHHHHHHHHhc
Q 012606 387 EACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG---GTLGMFGLAQRYKSSFH 449 (460)
Q Consensus 387 ~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG---G~~~~~~~~~ry~~~~~ 449 (460)
++++.+|+..|+..--+|+-++|...... .+.|+.++-|.+| ...|.....++...+++
T Consensus 42 e~~~~iA~~l~v~~~~V~~vatFY~~f~~----~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~Lg 103 (156)
T PRK05988 42 DAVPVIAEALNLSRAEVHGVITFYHDFRT----HPPGRHVLKLCRAEACQAMGGDALAAHAKARLG 103 (156)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhccCC----CCCCCEEEEEeCCchhhcCCHHHHHHHHHHHhC
Confidence 46677777888876555544444444321 2568888877777 45666666666666664
No 148
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=21.65 E-value=1e+02 Score=27.97 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=0.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCe-EEEE
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLK-SHLL 172 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~-~~iv 172 (460)
|| || |-+|+++|..+.+.|++ ++|+
T Consensus 2 II--Ga--G~aGl~~a~~l~~~g~~~v~v~ 27 (203)
T PF13738_consen 2 II--GA--GPAGLAAAAHLLERGIDPVVVL 27 (203)
T ss_dssp EE------SHHHHHHHHHHHHTT---EEEE
T ss_pred EE--Cc--CHHHHHHHHHHHhCCCCcEEEE
No 149
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=21.63 E-value=5.2e+02 Score=26.35 Aligned_cols=49 Identities=18% Similarity=0.007 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCC
Q 012606 276 VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT 331 (460)
Q Consensus 276 ~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~ 331 (460)
+.++..+|.+. .|| +|+-.|.|....-+.+.+++.|...++++....+.
T Consensus 192 ~~~~v~~i~~~------~~d-~v~~~~~~~~~~~~~r~~~~~G~~~~~~~~~~~~~ 240 (366)
T COG0683 192 FSALVAKIKAA------GPD-AVLVGGYGPDAALFLRQAREQGLKAKLIGGDGAGT 240 (366)
T ss_pred hHHHHHHHHhc------CCC-EEEECCCCccchHHHHHHHHcCCCCccccccccCc
Confidence 55566777654 578 55567888888899999999998888888776554
No 150
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=21.28 E-value=1.1e+02 Score=34.28 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=23.7
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
||-.|| |-+|.++|+.+++.|+++.++=.+
T Consensus 74 VvVIGG--Gi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 74 VLVVGG--GATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCEEEEEecc
Confidence 444565 779999999999999997776443
No 151
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.28 E-value=2.4e+02 Score=26.42 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=25.8
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||++ +...+.|+..++++.|. ++.|+|++.
T Consensus 177 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~v~g~d~ 215 (267)
T cd06283 177 KKKTAIFAA--NGLILLEVLKALKELGIRIPEDVGLIGFDD 215 (267)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCccceEEEEeCC
Confidence 358888876 45677899999988774 457777764
No 152
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=21.03 E-value=1.2e+02 Score=30.77 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.9
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
||-.|| |-.|.++|+..++.|++++|+=.
T Consensus 3 vvIIGa--Gi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 3 VIVVGA--GIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEEec
Confidence 333465 78999999999999999777644
No 153
>PRK06475 salicylate hydroxylase; Provisional
Probab=20.81 E-value=1.2e+02 Score=31.40 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.6
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
+|+-.|| |-.|.++|.+.++.|++++|+=..
T Consensus 4 ~V~IvGg--GiaGl~~A~~L~~~G~~V~i~E~~ 34 (400)
T PRK06475 4 SPLIAGA--GVAGLSAALELAARGWAVTIIEKA 34 (400)
T ss_pred cEEEECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 3444565 779999999999999998887543
No 154
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=20.78 E-value=1.1e+02 Score=30.92 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=24.1
Q ss_pred EEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 145 VTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 145 Vt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
+-.|| |-.|.++|.+.++.|++++|+=...
T Consensus 3 iIvGa--G~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 3 VIVGG--GMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEECC--CHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 33465 7899999999999999998885543
No 155
>PRK07538 hypothetical protein; Provisional
Probab=20.58 E-value=1.2e+02 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=23.5
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+-.|| |=.|.++|.+.++.|++++||=.
T Consensus 3 V~IVGa--G~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 3 VLIAGG--GIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEEc
Confidence 444566 66999999999999999988854
No 156
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=20.52 E-value=2.4e+02 Score=27.38 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=25.7
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||++ +...+.|+..++++.|. ++.|+|++.
T Consensus 212 ~~~~ai~~~--~d~~a~gv~~al~~~g~~ip~di~vvg~D~ 250 (309)
T PRK11041 212 QPPTAVFCH--SDVMALGALSQAKRMGLRVPQDLSIIGFDD 250 (309)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 358988863 55677799999998774 467777664
No 157
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=20.50 E-value=1.2e+02 Score=33.28 Aligned_cols=30 Identities=37% Similarity=0.643 Sum_probs=24.1
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
||-.|| |-.|.++|+.+++.|++++++=..
T Consensus 9 VvIIGG--Gi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 9 VIIIGG--GATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred EEEECc--CHHHHHHHHHHHHcCCeEEEEECC
Confidence 444566 779999999999999998877543
No 158
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.49 E-value=1.1e+02 Score=31.24 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.7
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+-.|| |-.|.++|.+.++.|++++|+=.
T Consensus 4 V~IvGg--G~~Gl~~A~~L~~~G~~v~l~E~ 32 (374)
T PRK06617 4 TVILGC--GLSGMLTALSFAQKGIKTTIFES 32 (374)
T ss_pred EEEECC--CHHHHHHHHHHHcCCCeEEEecC
Confidence 444465 78999999999999999988853
No 159
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=20.40 E-value=8.4e+02 Score=24.13 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=23.2
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCC-CCeEEE
Q 012606 293 RAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTA 325 (460)
Q Consensus 293 ~pD~vvv~vGtGgt~~Gl~~~~~~~g~-~~~vig 325 (460)
.||.|++. +.|+....+.+.+++.|. .+++++
T Consensus 187 ~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~ 219 (334)
T cd06356 187 KPDFVMSI-LVGANHLSFYRQWAAAGLGNIPMAS 219 (334)
T ss_pred CCCEEEEe-ccCCcHHHHHHHHHHcCCccCceee
Confidence 68988874 455566778888888887 666665
No 160
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=20.36 E-value=1.2e+02 Score=32.11 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=23.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
||..|+ |-.|.+.|+.|++.|.+++|+=.
T Consensus 7 VvVVG~--G~aGl~AA~~aa~~G~~V~vlEk 35 (466)
T PRK08274 7 VLVIGG--GNAALCAALAAREAGASVLLLEA 35 (466)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 444565 77999999999999998877643
No 161
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.36 E-value=2.6e+02 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.|+.||+ .+...+.|+..++++.|. ++.|+|++-
T Consensus 171 ~~~~ai~~--~~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 209 (263)
T cd06280 171 ERPEALVA--SNGLLLLGALRAVRAAGLRIPQDLALAGFDN 209 (263)
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCcEEEEEeCC
Confidence 46888776 566778899999998774 567777664
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=20.32 E-value=1.1e+02 Score=32.97 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=25.0
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
.|+-.|| |-.|.+.|.++++.|++++++.+
T Consensus 213 dvvIIGg--GpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 213 DVLVVGG--GPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCcEEEEec
Confidence 4555576 77999999999999999999954
No 163
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=20.13 E-value=1.3e+02 Score=32.23 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=24.6
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
.|+-.|| |=.|..+|.+.++.|+++++|-.
T Consensus 2 ~VvVIGg--GlAGleaA~~LAr~G~~V~LiE~ 31 (433)
T TIGR00137 2 PVHVIGG--GLAGSEAAWQLAQAGVPVILYEM 31 (433)
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCcEEEEec
Confidence 3454566 66999999999999999999964
No 164
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=20.05 E-value=1.4e+02 Score=33.49 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=24.9
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
||..|| |-+|.+.|+++++.|.++.++-+.
T Consensus 7 VIVVGG--GpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 7 VIVVGG--GHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred EEEECc--hHHHHHHHHHHHHcCCcEEEEecc
Confidence 555576 669999999999999999998764
No 165
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=20.01 E-value=1.2e+02 Score=31.31 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=24.0
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
.|+-.|| |-.|.++|.+.++.|++++|+=.
T Consensus 6 dV~IvGa--G~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 6 DVAIIGG--GMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred CEEEECc--cHHHHHHHHHHHhCCCEEEEEcC
Confidence 3554565 78999999999999999988743
Done!