Query 012606
Match_columns 460
No_of_seqs 324 out of 2249
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9b_A D-cysteine desulfhydras 100.0 5.1E-55 1.7E-59 444.1 28.7 303 77-440 29-338 (342)
2 1f2d_A 1-aminocyclopropane-1-c 100.0 4.5E-55 1.5E-59 444.1 22.1 311 77-444 12-336 (341)
3 1j0a_A 1-aminocyclopropane-1-c 100.0 7.5E-54 2.6E-58 432.4 27.1 302 78-446 19-323 (325)
4 1tzj_A ACC deaminase, 1-aminoc 100.0 1.8E-52 6E-57 424.1 24.0 309 77-442 12-333 (338)
5 3l6b_A Serine racemase; pyrido 100.0 2.9E-48 9.9E-53 395.1 20.6 289 79-439 24-321 (346)
6 4h27_A L-serine dehydratase/L- 100.0 2.3E-47 7.9E-52 391.0 23.4 301 78-449 44-357 (364)
7 2gn0_A Threonine dehydratase c 100.0 1.4E-47 4.8E-52 389.4 19.0 292 79-442 39-335 (342)
8 1ve5_A Threonine deaminase; ri 100.0 3.6E-47 1.2E-51 381.1 20.0 287 79-438 19-310 (311)
9 2rkb_A Serine dehydratase-like 100.0 8.1E-47 2.8E-51 379.8 22.7 299 79-449 6-317 (318)
10 1v71_A Serine racemase, hypoth 100.0 1.6E-47 5.5E-52 385.8 17.4 291 79-442 25-319 (323)
11 1p5j_A L-serine dehydratase; l 100.0 7.3E-47 2.5E-51 388.3 22.6 302 78-449 44-357 (372)
12 4d9i_A Diaminopropionate ammon 100.0 5.9E-46 2E-50 384.8 24.6 297 79-440 43-385 (398)
13 2d1f_A Threonine synthase; ami 100.0 1.9E-46 6.4E-51 383.6 20.5 291 77-439 35-335 (360)
14 2zsj_A Threonine synthase; PLP 100.0 2.3E-46 7.7E-51 381.8 20.4 290 77-439 27-328 (352)
15 1x1q_A Tryptophan synthase bet 100.0 4.1E-46 1.4E-50 388.3 22.3 345 37-440 31-410 (418)
16 3aey_A Threonine synthase; PLP 100.0 4.1E-46 1.4E-50 379.7 21.5 291 77-438 25-325 (351)
17 3dwg_A Cysteine synthase B; su 100.0 1.2E-45 4.2E-50 372.7 22.9 276 79-433 14-298 (325)
18 2v03_A Cysteine synthase B; py 100.0 4.2E-45 1.4E-49 365.1 26.3 269 79-435 9-284 (303)
19 2egu_A Cysteine synthase; O-ac 100.0 1.7E-45 5.9E-50 368.6 23.5 277 78-434 12-295 (308)
20 1y7l_A O-acetylserine sulfhydr 100.0 1.2E-44 4E-49 363.8 27.5 281 78-435 11-303 (316)
21 2o2e_A Tryptophan synthase bet 100.0 2.1E-45 7.1E-50 383.2 22.1 344 39-441 37-413 (422)
22 1ve1_A O-acetylserine sulfhydr 100.0 1.8E-44 6.3E-49 360.5 27.8 277 78-434 7-292 (304)
23 1v8z_A Tryptophan synthase bet 100.0 1.9E-45 6.7E-50 379.3 21.0 340 41-440 8-381 (388)
24 3tbh_A O-acetyl serine sulfhyd 100.0 2.4E-44 8E-49 364.6 28.4 281 78-437 19-308 (334)
25 3ss7_X D-serine dehydratase; t 100.0 7.2E-45 2.4E-49 381.2 25.3 309 79-447 77-440 (442)
26 3iau_A Threonine deaminase; py 100.0 1.8E-45 6.2E-50 377.2 19.0 296 79-445 59-358 (366)
27 2pqm_A Cysteine synthase; OASS 100.0 1.9E-44 6.3E-49 366.6 26.0 279 78-434 21-310 (343)
28 2q3b_A Cysteine synthase A; py 100.0 3.1E-44 1E-48 360.3 27.1 281 78-436 14-302 (313)
29 1qop_B Tryptophan synthase bet 100.0 2.4E-45 8.2E-50 379.9 19.2 343 37-440 9-386 (396)
30 3vc3_A Beta-cyanoalnine syntha 100.0 1.7E-44 5.9E-49 367.0 24.1 277 79-433 34-318 (344)
31 4aec_A Cysteine synthase, mito 100.0 2.7E-44 9.3E-49 373.9 25.9 279 77-433 120-406 (430)
32 1z7w_A Cysteine synthase; tran 100.0 6.8E-44 2.3E-48 359.2 27.2 279 78-434 13-299 (322)
33 1tdj_A Biosynthetic threonine 100.0 2.1E-44 7.2E-49 381.7 20.1 290 79-440 30-324 (514)
34 1wkv_A Cysteine synthase; homo 100.0 4E-44 1.4E-48 369.5 19.9 309 40-439 54-377 (389)
35 1o58_A O-acetylserine sulfhydr 100.0 3E-43 1E-47 351.8 25.3 274 77-434 17-296 (303)
36 1jbq_A B, cystathionine beta-s 100.0 2E-42 6.8E-47 361.3 24.4 286 78-434 106-400 (435)
37 3pc3_A CG1753, isoform A; CBS, 100.0 3.4E-42 1.1E-46 368.6 21.4 285 78-433 58-351 (527)
38 1e5x_A Threonine synthase; thr 100.0 1.4E-40 4.9E-45 352.3 30.9 296 78-445 128-446 (486)
39 1vb3_A Threonine synthase; PLP 100.0 2.4E-35 8.2E-40 307.9 17.5 287 77-436 80-381 (428)
40 4f4f_A Threonine synthase; str 100.0 6.3E-29 2.1E-33 261.0 21.4 276 107-439 101-422 (468)
41 1kl7_A Threonine synthase; thr 100.0 1E-28 3.4E-33 262.3 20.8 287 78-434 94-452 (514)
42 3v7n_A Threonine synthase; ssg 99.9 4.1E-27 1.4E-31 247.5 19.8 276 108-439 115-442 (487)
43 4ggo_A Trans-2-enoyl-COA reduc 70.0 41 0.0014 34.0 12.1 38 140-178 49-87 (401)
44 2gk4_A Conserved hypothetical 64.5 7.7 0.00026 36.4 5.2 26 151-176 28-53 (232)
45 1p9o_A Phosphopantothenoylcyst 63.7 16 0.00056 35.7 7.6 41 137-177 33-90 (313)
46 3v8e_A Nicotinamidase; hydrola 60.5 17 0.00059 33.3 6.8 60 134-193 147-211 (216)
47 3gbc_A Pyrazinamidase/nicotina 57.9 19 0.00063 32.2 6.4 61 133-193 117-180 (186)
48 2wt9_A Nicotinamidase; hydrola 56.1 19 0.00066 33.3 6.3 58 136-193 162-223 (235)
49 1im5_A 180AA long hypothetical 52.6 26 0.00089 30.8 6.4 68 107-177 89-156 (180)
50 3eef_A N-carbamoylsarcosine am 51.8 34 0.0012 30.1 7.0 60 136-196 105-167 (182)
51 1u7z_A Coenzyme A biosynthesis 51.0 19 0.00065 33.5 5.4 25 151-175 33-57 (226)
52 3o94_A Nicotinamidase; hydrola 50.2 29 0.00098 31.8 6.4 60 136-195 138-201 (211)
53 3hu5_A Isochorismatase family 49.4 25 0.00085 31.7 5.8 59 135-193 120-181 (204)
54 1vp8_A Hypothetical protein AF 49.0 66 0.0022 29.3 8.3 72 121-196 24-103 (201)
55 3r2j_A Alpha/beta-hydrolase-li 48.7 39 0.0013 31.2 7.1 58 136-193 152-212 (227)
56 3fwz_A Inner membrane protein 47.1 1.2E+02 0.004 24.9 11.2 32 142-175 8-39 (140)
57 3kkj_A Amine oxidase, flavin-c 46.7 18 0.00063 31.5 4.4 27 144-172 5-31 (336)
58 3l9w_A Glutathione-regulated p 40.3 1.8E+02 0.0062 29.1 11.2 50 142-199 5-55 (413)
59 1j2r_A Hypothetical isochorism 39.7 40 0.0014 30.0 5.6 42 136-177 127-168 (199)
60 3ipc_A ABC transporter, substr 38.5 2.5E+02 0.0085 26.2 15.3 37 293-330 193-229 (356)
61 1nf9_A Phenazine biosynthesis 37.6 45 0.0015 30.0 5.6 42 136-177 137-178 (207)
62 3gdg_A Probable NADP-dependent 37.1 1.3E+02 0.0044 27.4 8.9 34 142-175 21-55 (267)
63 1yac_A Ycacgp, YCAC gene produ 37.1 32 0.0011 31.2 4.4 58 136-193 100-160 (208)
64 3irv_A Cysteine hydrolase; str 36.7 46 0.0016 30.7 5.6 41 136-176 134-174 (233)
65 3tg2_A Vibriobactin-specific i 35.9 44 0.0015 30.7 5.2 42 136-177 133-174 (223)
66 3hb7_A Isochorismatase hydrola 35.7 50 0.0017 29.7 5.6 43 135-177 114-156 (204)
67 3lqy_A Putative isochorismatas 35.2 50 0.0017 29.3 5.4 42 136-177 108-149 (190)
68 3oqp_A Putative isochorismatas 34.3 54 0.0018 29.8 5.5 42 135-176 103-144 (211)
69 3gd5_A Otcase, ornithine carba 34.1 80 0.0027 30.9 7.0 35 142-177 158-192 (323)
70 1pvv_A Otcase, ornithine carba 32.5 94 0.0032 30.3 7.2 63 108-177 125-190 (315)
71 3l6u_A ABC-type sugar transpor 32.5 79 0.0027 28.9 6.6 35 292-328 194-229 (293)
72 2fq1_A Isochorismatase; ENTB, 32.4 56 0.0019 31.0 5.6 43 135-177 139-181 (287)
73 3txy_A Isochorismatase family 32.1 63 0.0021 28.9 5.6 42 136-177 121-162 (199)
74 3ot4_A Putative isochorismatas 31.9 67 0.0023 29.8 5.8 42 136-177 154-195 (236)
75 4ep1_A Otcase, ornithine carba 31.3 94 0.0032 30.7 7.0 35 142-177 180-214 (340)
76 3mcw_A Putative hydrolase; iso 31.3 59 0.002 29.0 5.2 41 136-176 108-148 (198)
77 3hut_A Putative branched-chain 30.6 3.3E+02 0.011 25.3 14.2 36 293-329 194-229 (358)
78 2cul_A Glucose-inhibited divis 30.2 52 0.0018 29.7 4.7 30 144-175 6-35 (232)
79 3oz2_A Digeranylgeranylglycero 29.9 47 0.0016 31.8 4.6 28 144-173 7-34 (397)
80 1nba_A N-carbamoylsarcosine am 29.8 67 0.0023 30.3 5.5 41 136-176 159-199 (264)
81 4h17_A Hydrolase, isochorismat 29.7 65 0.0022 28.8 5.2 41 136-176 118-158 (197)
82 4a8t_A Putrescine carbamoyltra 29.7 1.2E+02 0.004 29.9 7.4 35 142-177 176-210 (339)
83 2a67_A Isochorismatase family 29.4 63 0.0022 27.9 4.9 40 136-175 96-135 (167)
84 4ekn_B Aspartate carbamoyltran 28.9 1.7E+02 0.0059 28.2 8.4 55 142-198 152-210 (306)
85 4hb9_A Similarities with proba 28.9 51 0.0018 31.8 4.7 28 143-172 3-30 (412)
86 4ffl_A PYLC; amino acid, biosy 28.8 69 0.0023 31.0 5.6 32 142-175 2-33 (363)
87 1x9g_A Putative MAR1; structur 28.5 58 0.002 29.3 4.7 38 140-177 106-143 (200)
88 2ywl_A Thioredoxin reductase r 28.3 72 0.0025 27.1 5.1 31 144-176 4-34 (180)
89 3pi7_A NADH oxidoreductase; gr 28.2 1.6E+02 0.0056 28.1 8.2 55 132-193 156-210 (349)
90 2ef0_A Ornithine carbamoyltran 28.2 1.2E+02 0.004 29.4 7.0 35 142-177 155-189 (301)
91 4fk1_A Putative thioredoxin re 28.2 54 0.0018 30.7 4.6 28 144-173 9-36 (304)
92 2g1u_A Hypothetical protein TM 28.2 93 0.0032 26.0 5.7 33 141-175 19-51 (155)
93 4a5l_A Thioredoxin reductase; 27.7 46 0.0016 31.0 4.0 28 144-173 7-34 (314)
94 3dme_A Conserved exported prot 27.7 54 0.0019 31.0 4.6 31 143-175 6-36 (369)
95 2oln_A NIKD protein; flavoprot 27.7 53 0.0018 31.9 4.6 31 143-175 6-36 (397)
96 8abp_A L-arabinose-binding pro 27.4 1.2E+02 0.004 27.9 6.8 37 292-328 194-233 (306)
97 4a8p_A Putrescine carbamoyltra 27.1 1.4E+02 0.0047 29.7 7.4 35 142-177 154-188 (355)
98 3k9c_A Transcriptional regulat 27.1 1.3E+02 0.0046 27.4 7.2 36 292-329 184-223 (289)
99 2i6u_A Otcase, ornithine carba 27.0 1.3E+02 0.0044 29.2 7.1 35 143-177 150-184 (307)
100 3iup_A Putative NADPH:quinone 26.8 1.6E+02 0.0055 28.7 8.0 55 132-193 163-217 (379)
101 3kl2_A Putative isochorismatas 26.6 78 0.0027 28.9 5.2 41 136-176 146-186 (226)
102 4dgk_A Phytoene dehydrogenase; 26.5 52 0.0018 33.2 4.4 28 143-172 3-30 (501)
103 3uve_A Carveol dehydrogenase ( 26.3 3.7E+02 0.013 24.5 10.6 34 140-175 11-44 (286)
104 4gcm_A TRXR, thioredoxin reduc 26.3 61 0.0021 30.3 4.6 27 144-172 9-35 (312)
105 3k4h_A Putative transcriptiona 25.8 1.3E+02 0.0046 27.2 6.9 35 292-328 191-229 (292)
106 1vlv_A Otcase, ornithine carba 25.4 1.1E+02 0.0039 29.8 6.4 35 143-177 169-203 (325)
107 3rp8_A Flavoprotein monooxygen 25.1 65 0.0022 31.5 4.7 31 143-175 25-55 (407)
108 2i0z_A NAD(FAD)-utilizing dehy 25.0 68 0.0023 32.2 4.9 34 138-174 24-57 (447)
109 1yvv_A Amine oxidase, flavin-c 24.9 64 0.0022 30.3 4.5 29 144-174 5-33 (336)
110 3alj_A 2-methyl-3-hydroxypyrid 24.8 67 0.0023 31.1 4.7 32 142-175 12-43 (379)
111 3zu3_A Putative reductase YPO4 24.8 4.5E+02 0.015 26.4 10.8 35 141-176 47-82 (405)
112 1yzv_A Hypothetical protein; s 24.8 55 0.0019 29.5 3.8 43 135-177 104-146 (204)
113 3dwg_A Cysteine synthase B; su 24.7 4.6E+02 0.016 24.9 15.7 37 294-332 72-108 (325)
114 3dbi_A Sugar-binding transcrip 24.7 1.2E+02 0.0041 28.5 6.4 35 292-328 241-279 (338)
115 4a2c_A Galactitol-1-phosphate 24.6 2.5E+02 0.0086 26.5 8.9 45 142-193 162-206 (346)
116 1ryi_A Glycine oxidase; flavop 24.2 68 0.0023 30.8 4.6 31 143-175 19-49 (382)
117 3ka7_A Oxidoreductase; structu 24.1 75 0.0026 31.0 5.0 29 143-173 2-30 (425)
118 2h0a_A TTHA0807, transcription 24.0 1E+02 0.0034 27.8 5.5 35 292-328 179-217 (276)
119 3cgv_A Geranylgeranyl reductas 23.8 69 0.0024 30.8 4.6 31 143-175 6-36 (397)
120 2x3n_A Probable FAD-dependent 23.8 69 0.0024 31.2 4.6 31 143-175 8-38 (399)
121 1duv_G Octase-1, ornithine tra 23.7 1.4E+02 0.0049 29.2 6.8 36 142-177 156-191 (333)
122 3g1w_A Sugar ABC transporter; 23.6 4.1E+02 0.014 24.0 15.0 35 292-328 186-222 (305)
123 3g85_A Transcriptional regulat 23.5 1.6E+02 0.0053 26.8 6.8 34 292-327 187-224 (289)
124 3ihm_A Styrene monooxygenase A 23.2 75 0.0026 31.7 4.8 32 143-176 24-55 (430)
125 3tpf_A Otcase, ornithine carba 23.2 1.8E+02 0.0062 28.1 7.3 34 143-177 148-181 (307)
126 3qk7_A Transcriptional regulat 23.1 1.3E+02 0.0045 27.6 6.3 35 292-328 186-224 (294)
127 3r7f_A Aspartate carbamoyltran 22.9 1.4E+02 0.0049 28.8 6.5 35 142-176 148-183 (304)
128 3v2h_A D-beta-hydroxybutyrate 22.6 3.7E+02 0.013 24.7 9.4 33 140-174 25-57 (281)
129 1k0i_A P-hydroxybenzoate hydro 22.6 67 0.0023 31.1 4.2 29 144-174 5-33 (394)
130 3two_A Mannitol dehydrogenase; 22.4 2.4E+02 0.0081 26.9 8.2 44 142-193 178-221 (348)
131 4at0_A 3-ketosteroid-delta4-5a 22.3 73 0.0025 32.6 4.6 30 143-174 43-72 (510)
132 3brq_A HTH-type transcriptiona 22.3 1.2E+02 0.0043 27.4 5.9 35 292-328 199-237 (296)
133 2uzz_A N-methyl-L-tryptophan o 21.9 76 0.0026 30.3 4.4 30 144-175 5-34 (372)
134 1c0p_A D-amino acid oxidase; a 21.9 84 0.0029 30.1 4.7 30 143-174 8-37 (363)
135 3nix_A Flavoprotein/dehydrogen 21.9 67 0.0023 31.4 4.1 31 143-175 7-37 (421)
136 3gyb_A Transcriptional regulat 21.7 1.3E+02 0.0043 27.2 5.8 35 292-328 175-213 (280)
137 2vou_A 2,6-dihydroxypyridine h 21.7 97 0.0033 30.2 5.2 32 142-175 6-37 (397)
138 2gf3_A MSOX, monomeric sarcosi 21.6 82 0.0028 30.2 4.6 30 144-175 6-35 (389)
139 3efb_A Probable SOR-operon reg 21.5 2.2E+02 0.0076 26.5 7.5 68 259-331 28-96 (266)
140 3kr9_A SAM-dependent methyltra 21.5 1.1E+02 0.0036 28.2 5.1 36 293-330 14-49 (225)
141 3csu_A Protein (aspartate carb 21.4 2.7E+02 0.0093 26.9 8.2 56 142-198 155-213 (310)
142 2rgy_A Transcriptional regulat 21.3 1.2E+02 0.0042 27.7 5.6 36 292-329 188-227 (290)
143 3fbs_A Oxidoreductase; structu 21.3 89 0.003 28.4 4.6 31 143-175 4-34 (297)
144 1qpz_A PURA, protein (purine n 21.2 1.7E+02 0.006 27.4 6.9 36 292-329 237-276 (340)
145 4f2g_A Otcase 1, ornithine car 21.2 1.5E+02 0.0051 28.7 6.3 34 142-176 155-188 (309)
146 3dje_A Fructosyl amine: oxygen 21.1 76 0.0026 31.3 4.3 31 143-175 8-39 (438)
147 3o74_A Fructose transport syst 21.0 2.1E+02 0.0073 25.4 7.2 44 279-328 169-216 (272)
148 2fep_A Catabolite control prot 21.0 1.7E+02 0.0058 26.7 6.5 35 292-328 194-232 (289)
149 3kvo_A Hydroxysteroid dehydrog 20.9 5.5E+02 0.019 24.5 10.9 36 140-177 45-80 (346)
150 1y56_B Sarcosine oxidase; dehy 20.9 78 0.0027 30.4 4.3 30 144-175 8-37 (382)
151 3oid_A Enoyl-[acyl-carrier-pro 20.9 4.5E+02 0.015 23.7 9.5 33 140-174 4-36 (258)
152 3gbv_A Putative LACI-family tr 20.8 1.2E+02 0.0041 27.7 5.4 43 279-328 190-233 (304)
153 1ml4_A Aspartate transcarbamoy 20.7 2E+02 0.0068 27.8 7.1 85 107-198 123-213 (308)
154 3c4a_A Probable tryptophan hyd 20.7 93 0.0032 30.2 4.8 29 144-174 3-33 (381)
155 4gqb_A Protein arginine N-meth 20.6 72 0.0025 34.3 4.2 34 296-329 361-394 (637)
156 2xdo_A TETX2 protein; tetracyc 20.6 90 0.0031 30.4 4.7 32 142-175 27-58 (398)
157 3nrn_A Uncharacterized protein 20.5 96 0.0033 30.4 4.9 28 143-172 2-29 (421)
158 2ioy_A Periplasmic sugar-bindi 20.2 1.4E+02 0.0047 27.2 5.7 35 292-328 182-217 (283)
159 1dxh_A Ornithine carbamoyltran 20.2 2.8E+02 0.0095 27.1 8.0 65 107-177 123-191 (335)
160 3gv0_A Transcriptional regulat 20.1 1.8E+02 0.0063 26.4 6.6 36 292-329 187-226 (288)
161 1tdj_A Biosynthetic threonine 20.1 6.7E+02 0.023 25.9 11.4 33 298-332 82-114 (514)
162 4e12_A Diketoreductase; oxidor 20.1 1.2E+02 0.004 28.4 5.2 31 142-174 5-35 (283)
163 3brs_A Periplasmic binding pro 20.0 1.3E+02 0.0043 27.3 5.4 37 292-330 189-227 (289)
No 1
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=100.00 E-value=5.1e-55 Score=444.15 Aligned_cols=303 Identities=22% Similarity=0.284 Sum_probs=247.8
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..++|||+++ ++|+ +.+ |++||+|+||+|++.+||||+|++.+++.+|+++|.++||++||+|||||+
T Consensus 29 ~~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~ 96 (342)
T 4d9b_A 29 IGAPTPLEYL--PRLS-DYL---------GREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVR 96 (342)
T ss_dssp SCSCCCEEEC--HHHH-HHH---------TSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHH
T ss_pred cCCCCceeEh--hhhH-Hhh---------CCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHH
Confidence 3499999999 8887 433 679999999999655799999999999999999999999998778999999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccc-----hhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012606 157 AVAVSCAERGLKSHLLLRGEQPQIL-----TGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~~~~~~-----~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 230 (460)
|+|++|+++|++|+||||+..+... ..|..+++.||| |+.+++..+ +++..+..++
T Consensus 97 alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~--~~~~~~~~a~---------------- 158 (342)
T 4d9b_A 97 QTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTD--PDAQLQTLAT---------------- 158 (342)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSS--HHHHHHHHHH----------------
T ss_pred HHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhh--HHHHHHHHHH----------------
Confidence 9999999999999999999876531 246678899998 999987521 2222221111
Q ss_pred HHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
++.+..+.+|++|+++.||.+.+||.+++.||++|+... ..||+||+|+|||||++|+
T Consensus 159 ---------------------~l~~~~~~~~~~p~~~~n~~~~~G~~t~~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi 216 (342)
T 4d9b_A 159 ---------------------RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEV-VGLSSVVVASGSAGTHAGL 216 (342)
T ss_dssp ---------------------HHHHTTCCEEECCGGGCSHHHHHHHHHHHHHHHHHHTTT-CCCCEEEEEESSSHHHHHH
T ss_pred ---------------------HHHhcCCceEEeCCCCCChHHHHHHHHHHHHHHHHHhcc-CCCCEEEEeCCCCHHHHHH
Confidence 122334567999999999999999999999999997311 3799999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
+.++++.++.++|||||++++.....+....+.+.+++.++.. +..++.+++++.++.|.|+|+|++++++
T Consensus 217 ~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~---------~~~~~~~~~~~~d~~~~V~d~e~~~a~~ 287 (342)
T 4d9b_A 217 AVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALT---------ATADIHLWDDYFAPGYGVPNDAGMEAVK 287 (342)
T ss_dssp HHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCC---------CCCCCEEECTTSTTCTTCCCHHHHHHHH
T ss_pred HHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCC---------CccceEEEecCCCceEecCCHHHHHHHH
Confidence 9999999999999999999987755544433444455555431 1234456778899999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCCcchhhH
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGL 440 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~~~~~~~ 440 (460)
+|++++||++||+|+|++++|+++++++ .+.++++||+||||||+|++++
T Consensus 288 ~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~tGGn~~~~~~ 338 (342)
T 4d9b_A 288 LLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPALFAY 338 (342)
T ss_dssp HHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEEEECCCTTHHHHH
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEECCCccchhhc
Confidence 9999999999999999999999998764 3667899999999999999874
No 2
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=100.00 E-value=4.5e-55 Score=444.12 Aligned_cols=311 Identities=24% Similarity=0.281 Sum_probs=248.0
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCC-ceEEEEeCCCC-CCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH 154 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~l~lKrEdln-~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNh 154 (460)
..++|||+++ ++|+ +.++ | .+||+||||+| |+.+||||+|++.++|.+|+++|.++||++|+|+|||
T Consensus 12 ~~~~TPL~~~--~~l~-~~~~--------g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~~~vv~~G~ssGN~ 80 (341)
T 1f2d_A 12 TFGPSPISNL--NRLS-QHLG--------SKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQ 80 (341)
T ss_dssp SSSSCCEEEC--HHHH-HHTT--------TCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHH
T ss_pred CCCCCcceeH--HhHH-HhhC--------CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHH
Confidence 3489999999 8876 4331 4 79999999998 7668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCC-----cc---chhhhHHHHhCCc-EEEeCCCchhh-HHHHHHHHhhhhhcCCCCcc
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQP-----QI---LTGYNLISTIYGK-VTYVPRTHYAH-RIEMLKSYANLVAGNNGDVV 224 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~-----~~---~~~~~~~~~~~Ga-V~~v~~~~~~~-~~~~~~~~A~~la~~~g~~~ 224 (460)
|+|+|++|+++|++|+||||+..+ +. +..|..+++.||| |+.+++..+.. .+.+. ..++
T Consensus 81 g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~-~~a~---------- 149 (341)
T 1f2d_A 81 TRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFA-NALQ---------- 149 (341)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHH-HHHH----------
T ss_pred HHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHH-HHHH----------
Confidence 999999999999999999999876 21 1347778999998 99998754311 01111 1111
Q ss_pred chhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-CcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCC
Q 012606 225 WCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGT 303 (460)
Q Consensus 225 w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGt 303 (460)
++.++.++.|++|.+ +.||....||.+++.||++|+...+..||+||+|+||
T Consensus 150 ---------------------------~l~~~~~~~~~i~~~~~~np~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGt 202 (341)
T 1f2d_A 150 ---------------------------ELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVT 202 (341)
T ss_dssp ---------------------------HHHHTTCCEEEECGGGTTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESS
T ss_pred ---------------------------HHHhcCCcEEEeCCCcCCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 122334456889998 9999999999999999999984112369999999999
Q ss_pred chhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcH
Q 012606 304 GTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFE 383 (460)
Q Consensus 304 Ggt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~ 383 (460)
|||++|++++|++.++.++|||||++++..........+....++.++... .+ ..+.+++++.++.|.|+|+
T Consensus 203 Ggt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ig~~~---~~-----~~~~~~~~~~~~~~~v~d~ 274 (341)
T 1f2d_A 203 GSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEH---EF-----KDFTLDTRFAYPCYGVPNE 274 (341)
T ss_dssp SHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCC---CC-----SCCCEECTTSTTBTTBCCH
T ss_pred hHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHcCCCC---Cc-----CeEEEecCcccceEecCCH
Confidence 999999999999999999999999999876554433233333444444211 11 2345677888999999999
Q ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhHHHHH
Q 012606 384 GEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQRY 444 (460)
Q Consensus 384 e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~~~g~~Vv~i~TGG~~~~~~~~~ry 444 (460)
|+++++++|++++||++||+|+|++++++++++++. +.++++||+|||||+++++.+.++|
T Consensus 275 e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~~ 336 (341)
T 1f2d_A 275 GTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGAPALSAYSSFF 336 (341)
T ss_dssp HHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECCCGGGGGGGGGGC
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEEEEECCchHHhhhhHHHh
Confidence 999999999999999999998999999999987643 5578999999999999999976665
No 3
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=100.00 E-value=7.5e-54 Score=432.40 Aligned_cols=302 Identities=24% Similarity=0.299 Sum_probs=242.8
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHH
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~A 157 (460)
.++|||+++ ++|+ +.+ |++||+|+||+|++.+||||+|++.+++.+|+++|.++||++|+|+||||+|
T Consensus 19 ~~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~a 86 (325)
T 1j0a_A 19 PWETPIQYL--PNIS-REI---------GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFV 86 (325)
T ss_dssp CSCCCEEEC--HHHH-HHH---------TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHH
T ss_pred cCCCCceEh--hhhh-hhh---------CCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHH
Confidence 389999999 7776 332 6799999999996446899999999999999999999999998899999999
Q ss_pred HHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCCchhhH-HHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 158 VAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHR-IEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~-~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
+|++|+++|++|+||||+.. +. .|..+++.||| |+++++..+... ..+. +.+
T Consensus 87 lA~~a~~~G~~~~iv~p~~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~-~~a--------------------- 141 (325)
T 1j0a_A 87 TGLAAKKLGLDAILVLRGKEELK---GNYLLDKIMGIETRVYDAKDSFELMKYAE-EIA--------------------- 141 (325)
T ss_dssp HHHHHHHTTCEEEEEEESCCCSC---HHHHHHHHTTCEEEEESCCSTTTHHHHHH-HHH---------------------
T ss_pred HHHHHHHhCCcEEEEECCCCCCC---chHHHHHHCCCEEEEeCcchhhhhhHHHH-HHH---------------------
Confidence 99999999999999999987 53 46668899998 999987543210 0111 111
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
.+++++.+..|++|+++.||.+.+||.+++.||++|+ + ..||+||+|+|||||++|+++++
T Consensus 142 ----------------~~l~~~~~~~~~~p~~~~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vv~~vGtGGt~~Gi~~~l 202 (325)
T 1j0a_A 142 ----------------EELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQS--E-VKFDSIVVAAGSGGTLAGLSLGL 202 (325)
T ss_dssp ----------------HHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHC--C-CCCSEEEEEESSSHHHHHHHHHH
T ss_pred ----------------HHHHHcCCceEEEcCCCCCHHHHHHHHHHHHHHHHhh--C-CCCCEEEEeCCchHhHHHHHHHH
Confidence 1233344567899999999999999999999999996 3 36999999999999999999999
Q ss_pred HhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 315 ICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 315 ~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
++.+++++|||||++++..........+.+++...++. +. ..++.+++++.++ |.|+|+|+++++++|++
T Consensus 203 k~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~---~~------~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~ 272 (325)
T 1j0a_A 203 SILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGV---KV------EVRPELYDYSFGE-YGKITGEVAQIIRKVGT 272 (325)
T ss_dssp HHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTC---CC------CSCCEEEECSTTS-TTCCCHHHHHHHHHHHH
T ss_pred HhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCC---CC------CCCcEEecCcccC-CCCCCHHHHHHHHHHHH
Confidence 99999999999999998765544332333333333331 10 1123456778888 99999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKS 446 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~~ 446 (460)
++||++||+|+|++++++++++++... +++||+||||||.+++.+.+++.+
T Consensus 273 ~~gi~~ep~ssa~a~aa~~~~~~~~~~-~~~Vv~i~tGG~~~~~~~~~~~~~ 323 (325)
T 1j0a_A 273 REGIILDPVYTGKAFYGLVDLARKGEL-GEKILFIHTGGISGTFHYGDKLLS 323 (325)
T ss_dssp HHSCCCCTTTHHHHHHHHHHHHHTTCS-CSEEEEEECCCHHHHHHTHHHHHT
T ss_pred hhCcccccchHHHHHHHHHHHHHcCCC-CCcEEEEECCCchhhhchHHHHhh
Confidence 999999998899999999988764322 899999999999999987777654
No 4
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=100.00 E-value=1.8e-52 Score=424.14 Aligned_cols=309 Identities=22% Similarity=0.265 Sum_probs=242.2
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCC-ceEEEEeCCCC-CCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH 154 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~l~lKrEdln-~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNh 154 (460)
..++|||+++ ++|+ +.++ | .+||+|+|++| ++.+||||+|++.+++.+|+++|.++||++|+|+|||
T Consensus 12 ~~~~TPL~~~--~~l~-~~~~--------g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~~~vv~~GassGN~ 80 (338)
T 1tzj_A 12 TFGPTPIQPL--ARLS-KHLG--------GKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQ 80 (338)
T ss_dssp SSSSCCEEEC--HHHH-HHTT--------SSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTCCEEEEEEETTCHH
T ss_pred CCCCCccEEH--HHHH-HhhC--------CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCCchhHH
Confidence 3489999999 8776 4331 4 79999999997 6337999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCcc-----chhhhHHHHhCCc-EEEeCCCchhhH-HHHHHHHhhhhhcCCCCccchh
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQI-----LTGYNLISTIYGK-VTYVPRTHYAHR-IEMLKSYANLVAGNNGDVVWCN 227 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~-----~~~~~~~~~~~Ga-V~~v~~~~~~~~-~~~~~~~A~~la~~~g~~~w~~ 227 (460)
|+|+|++|+++|++|+||||+..+.. +..+..+++.||| |+.+++. +++. .....+.++
T Consensus 81 g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~-~~~~~~~~~~~~a~------------- 146 (338)
T 1tzj_A 81 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG-FDIGFRRSWEDALE------------- 146 (338)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC--------CHHHHHHH-------------
T ss_pred HHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc-chhhHHHHHHHHHH-------------
Confidence 99999999999999999999987643 1236678899998 9999874 3321 000111111
Q ss_pred hhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-CcchHHHHHHHHHHHHHHHhHH-cCCCCCCEEEEecCCch
Q 012606 228 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGT 305 (460)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~np~~~~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGg 305 (460)
++.+..+.+|++|++ +.||...+||.+++.||++|+. .+ ..||+||+|+||||
T Consensus 147 ------------------------~l~~~~~~~~~~p~~~~~n~~~~~g~~t~~~Ei~~q~~~~~-~~~d~vv~~vG~GG 201 (338)
T 1tzj_A 147 ------------------------SVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELG-FKFDYVVVCSVTGS 201 (338)
T ss_dssp ------------------------HHHHTTCCEEECCGGGTSSTTTTTHHHHHHHHHHHHHHHHT-SCCSEEEEEESSSH
T ss_pred ------------------------HHHhcCCceEEeCCCcCCCcccHHHHHHHHHHHHHHHHhcC-CCCCEEEEecCCcH
Confidence 122334457889998 8999999999999999999984 22 36999999999999
Q ss_pred hHHHHHHHHHhc-CCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHH
Q 012606 306 TAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEG 384 (460)
Q Consensus 306 t~~Gl~~~~~~~-g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e 384 (460)
|++|++++|++. ++. +|||||++++.....+....+.+++++.++.+. + +++..+.+++++.++.|.|+|+|
T Consensus 202 t~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-----~~~~~~~~~~~~~~~~~~v~d~e 274 (338)
T 1tzj_A 202 TQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQITRIARQTAEKVGLER-D-----IMRADVVLDERFAGPEYGLPNEG 274 (338)
T ss_dssp HHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSS-C-----CCGGGCEEECTTSCSBTTBCCHH
T ss_pred HHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHHHHHHHHHHcCCCC-C-----CCcccEEEecCcccceeecCCHH
Confidence 999999999988 678 999999999876554433333344444444221 1 12244566788899999999999
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhHHH
Q 012606 385 EIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQ 442 (460)
Q Consensus 385 ~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~~~g~~Vv~i~TGG~~~~~~~~~ 442 (460)
+++++++|++++||++||+|+|++++++++++++. +.++++||+|||||+.+++.+.+
T Consensus 275 ~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~ 333 (338)
T 1tzj_A 275 TLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHLGGVPALNGYSF 333 (338)
T ss_dssp HHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECCCGGGGGGGTG
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCcccccchHH
Confidence 99999999999999999998999999999887643 55789999999999999988643
No 5
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=100.00 E-value=2.9e-48 Score=395.10 Aligned_cols=289 Identities=12% Similarity=0.101 Sum_probs=223.5
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhc----CCCeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH----IVTDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~----g~~~VVt~Gas~GNh 154 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.++.+. +.++||++ |+|||
T Consensus 24 ~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~--SsGNh 87 (346)
T 3l6b_A 24 HLTPVLTS--SILN-QLT---------GRNLFFKCELFQ-K-TGSFKIRGALNAVRSLVPDALERKPKAVVTH--SSGNH 87 (346)
T ss_dssp CCCCEECC--HHHH-HHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHTTC-----CCCSCEEEE--CSSHH
T ss_pred CCCCeEEc--hhhH-HHh---------CCeEEEEeCCCC-C-CCCcHHHHHHHHHHHHHHhccccCCCEEEEe--CCCHH
Confidence 79999999 8887 443 679999999999 6 8999999999999998774 66789986 56999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~ 233 (460)
|+|+|++|+++|++|+||||+..+. .+..+++.||| |+.+++. ++++.+.. +++
T Consensus 88 g~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~v~~~-~~~~~~~a----~~l----------------- 142 (346)
T 3l6b_A 88 GQALTYAAKLEGIPAYIVVPQTAPD---CKKLAIQAYGASIVYCEPS-DESRENVA----KRV----------------- 142 (346)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECSS-HHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHHH----HHH-----------------
Confidence 9999999999999999999998764 35567899998 9999874 55433221 111
Q ss_pred HHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHH
Q 012606 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLG 313 (460)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~ 313 (460)
.+..+..|+.|.+ ||....||.+++.||++|+ +.||+||+|+|||||++|++.+
T Consensus 143 --------------------~~~~~~~~i~~~~--np~~~~g~~t~~~Ei~~q~----~~~d~vvv~vG~GG~~aGi~~~ 196 (346)
T 3l6b_A 143 --------------------TEETEGIMVHPNQ--EPAVIAGQGTIALEVLNQV----PLVDALVVPVGGGGMLAGIAIT 196 (346)
T ss_dssp --------------------HHHHTCEECCSSS--CHHHHHHHHHHHHHHHHHS----TTCCEEEEECSSSHHHHHHHHH
T ss_pred --------------------HHhcCCEEECCCC--ChHHHHHHHHHHHHHHHhC----CCCCEEEEecCccHHHHHHHHH
Confidence 1122344555543 8888999999999999996 3799999999999999999999
Q ss_pred HHhcCCCCeEEEEeccCChhhHHHHHHhH-HH--HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 314 AICLGLPWEVTAIALVDTIDGYKQQEKNL-IS--EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 314 ~~~~g~~~~vigVe~~g~~~~~~~~~~~l-~~--~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
|++.+++++|||||+++++....+...+. .. ...+++.+++. ..++...+.+++++.++.+.|+|+|++++++
T Consensus 197 ~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~----~~~g~~~~~~~~~~~d~~~~V~d~e~~~a~~ 272 (346)
T 3l6b_A 197 VKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVK----SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQ 272 (346)
T ss_dssp HHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGC----SCCCTTHHHHHHHHCCEEEEECHHHHHHHHH
T ss_pred HHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhcc----CCCcHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 99999999999999998765443321110 00 00011121111 1123456677888999999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCCcchhh
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFG 439 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~~~~~~ 439 (460)
+|++++||++||+ +|++++++++.... ...++++||+||||||.++..
T Consensus 273 ~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~Vv~i~sGG~~d~~~ 321 (346)
T 3l6b_A 273 LVWERMKLLIEPT-AGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTS 321 (346)
T ss_dssp HHHHHHCCCCCHH-HHHHHHHHHSGGGGGSCTTCCEEEEEECBCCCCTTG
T ss_pred HHHHHCCcEEcHH-HHHHHHHHHHhhhhhccCCCCeEEEEcCCCCCCHHH
Confidence 9999999999997 89999999865432 235689999999999999876
No 6
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=100.00 E-value=2.3e-47 Score=390.96 Aligned_cols=301 Identities=14% Similarity=0.136 Sum_probs=226.6
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHH
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~A 157 (460)
.++|||+++ ++|+ +.+ |++||+|+|++| | +||||+|++.+++.++.++|.++||++ |+||||+|
T Consensus 44 ~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~Rga~~~i~~a~~~g~~~vv~a--SsGN~g~a 107 (364)
T 4h27_A 44 HVKTPIRDS--MALS-KMA---------GTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAKQGCAHFVCS--SSGNAGMA 107 (364)
T ss_dssp SCCCCEEEE--HHHH-HHH---------TSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEEC--CSSHHHHH
T ss_pred CCcCCeEEC--hhhH-HHh---------CCEEEEEeCCCC-C-CCCHHHHHHHHHHHHHHhcCCCEEEEe--CCChHHHH
Confidence 379999999 8887 443 679999999999 7 899999999999999999999999986 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||+..+. .+..+++.||| |+.+++ .|+++.+.. ++
T Consensus 108 lA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~Vv~v~~-~~~~a~~~a----~~--------------------- 158 (364)
T 4h27_A 108 AAYAARQLGVPATIVVPGTTPA---LTIERLKNEGATVKVVGE-LLDEAFELA----KA--------------------- 158 (364)
T ss_dssp HHHHHHHHTCCEEEEEETTSCH---HHHHHHHTTTCEEEEECS-STTHHHHHH----HH---------------------
T ss_pred HHHHHHHhCCceEEEECCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHH----HH---------------------
Confidence 9999999999999999998754 35567899998 999986 466533322 11
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+.++.++.++++. ..||...+|+.+++.||++|+ + ..||+||+|+|||||++|++.++++
T Consensus 159 ----------------l~~~~~~~~~~~~-~~np~~~~G~~t~~~Ei~~q~--~-~~~D~vvvpvG~GG~~aGi~~~~k~ 218 (364)
T 4h27_A 159 ----------------LAKNNPGWVYIPP-FDDPLIWEGHASIVKELKETL--W-EKPGAIALSVGGGGLLCGVVQGLQE 218 (364)
T ss_dssp ----------------HHHHSTTEEEECS-SCSHHHHHHHTHHHHHHHHHC--S-SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ----------------HHHhCCCeEEeCC-CCCHHHHHHHHHHHHHHHHHh--C-CCCCEEEEcCCccHHHHHHHHHHHH
Confidence 1222223333332 368999999999999999996 2 2699999999999999999999998
Q ss_pred cC-CCCeEEEEeccCChhhHHHHHHhH---HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHH
Q 012606 317 LG-LPWEVTAIALVDTIDGYKQQEKNL---ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (460)
Q Consensus 317 ~g-~~~~vigVe~~g~~~~~~~~~~~l---~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~L 392 (460)
.+ ++++|||||+++++........+. .+.. .++..++ ....+++..+.+++++.+..+.|+|+|+++++++|
T Consensus 219 ~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~-~tia~gl---~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l 294 (364)
T 4h27_A 219 VGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKI-TSVAKAL---GVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKF 294 (364)
T ss_dssp TTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCC-CCSCGGG---CCSSCCHHHHHHHTTSCEEEEEECHHHHHHHHHHH
T ss_pred hCCCCCeEEEEecCCChHHHHHHHCCCcccCCCC-CcHHHHh---CCCCCcHHHHHHHHhcCCEEEEECHHHHHHHHHHH
Confidence 87 789999999999875433221110 0000 0111111 11122345677777777778899999999999999
Q ss_pred HHHhCCcccccchHHHHHHHH-----HHhhh-cCCC-CCeEEEEecCCC-cchhhHHHHHHHHhc
Q 012606 393 AQLTGILVDPVYTLAAWEMAT-----LLSDE-KLKQ-DADVVMLHTGGT-LGMFGLAQRYKSSFH 449 (460)
Q Consensus 393 a~~eGI~vEP~ysgaa~Aal~-----~~~~~-~~~~-g~~Vv~i~TGG~-~~~~~~~~ry~~~~~ 449 (460)
++++||++||+ +|+++||++ ++.++ .+.+ +++||+|||||| +++.. .++|+..++
T Consensus 295 ~~~egi~~eps-~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~v~tGG~~~d~~~-l~~~~~~~~ 357 (364)
T 4h27_A 295 VDDEKILVEPA-CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQ-LRALKEQLG 357 (364)
T ss_dssp HHHHCCCCCHH-HHHHHHHHHTTHHHHHHHTTSSCSSCCEEEEEECBCSSCCHHH-HHHHHHHTT
T ss_pred HHHCCCeEccc-HHHHHHHHHhhhhHHhhhccCcCCCCCeEEEEECCCCCCCHHH-HHHHHHHhc
Confidence 99999999996 788999885 33332 2433 689999999997 88666 455655543
No 7
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=100.00 E-value=1.4e-47 Score=389.38 Aligned_cols=292 Identities=12% Similarity=0.093 Sum_probs=223.9
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |++||+|+|++| | +||||+|++.+++.++. +.+.++||++ |+||||+|
T Consensus 39 ~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tGSfKdR~a~~~i~~a~~~~~~~~vv~~--ssGN~g~a 102 (342)
T 2gn0_A 39 YKTGMPRS--NYFS-ERC---------KGEIFLKFENMQ-R-TGSFKIRGAFNKLSSLTEAEKRKGVVAC--SAGNHAQG 102 (342)
T ss_dssp CCCCCCBC--HHHH-HHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSCHHHHHTCEEEE--CSSHHHHH
T ss_pred CCCCceEc--hhhH-HHh---------CCEEEEEEccCC-C-cCChHHHHHHHHHHHHHHhcCCCEEEEE--CCChHHHH
Confidence 89999999 8877 433 679999999999 7 89999999999999875 4566789985 68999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||+..+. .+..+++.||+ |+.+++. |+++.+. ++++
T Consensus 103 lA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~l-------------------- 154 (342)
T 2gn0_A 103 VSLSCAMLGIDGKVVMPKGAPK---SKVAATCDYSAEVVLHGDN-FNDTIAK----VSEI-------------------- 154 (342)
T ss_dssp HHHHHHHHTCCEEEEECTTSCH---HHHHHHHHHSCEEEECCSS-HHHHHHH----HHHH--------------------
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHH--------------------
Confidence 9999999999999999998753 45668899998 9998874 6543222 1111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.+..+.+|+.| ..||....||.+++.||++|+ +.||+||+|+|||||++|++.+|++
T Consensus 155 -----------------~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~ 211 (342)
T 2gn0_A 155 -----------------VETEGRIFIPP--YDDPKVIAGQGTIGLEIMEDL----YDVDNVIVPIGGGGLIAGIAIAIKS 211 (342)
T ss_dssp -----------------HHHHCCEECCS--SSSHHHHHHHHHHHHHHHHHC----TTCCEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEEeCC--CCCHHHHHHHHHHHHHHHHHc----CCCCEEEEecCCchHHHHHHHHHHH
Confidence 11122334333 347989999999999999996 2689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHHHH--HHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEF--KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~~~--~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
.++.++|||||+++++....+...+..... ..++..++ ....++...+.+++++.++.+.|+|+|+++++++|++
T Consensus 212 ~~p~~~vigve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl---~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 288 (342)
T 2gn0_A 212 INPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGC---DVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQ 288 (342)
T ss_dssp HCTTSEEEEEEETTBCHHHHHHHHTSCCCCCSSCCSCGGG---CCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEEeCCChhHHHHHHcCCccccCCCCcccccc---CCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHH
Confidence 999999999999987653322111100000 00111111 1111223456678889999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCCcchhhHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQ 442 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~~~~~~~~~ 442 (460)
++||++||+ +|+++++++++.+. .+ ++++||+|+|||++|++.+.+
T Consensus 289 ~~gi~~eps-sa~alaa~~~~~~~~~~-~~~~Vv~i~tGg~~d~~~~~~ 335 (342)
T 2gn0_A 289 RNKVITEGA-GALACAALLSGKLDSHI-QNRKTVSIISGGNIDLSRVSQ 335 (342)
T ss_dssp HHCBCCCTG-GGHHHHHHHHTTTHHHH-TTSEEEEEECBCCCCHHHHHH
T ss_pred HcCeEEcHH-HHHHHHHHHHhhhhccC-CCCEEEEEECCCCCCHHHHHH
Confidence 999999997 89999999887542 23 689999999999999877543
No 8
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=100.00 E-value=3.6e-47 Score=381.13 Aligned_cols=287 Identities=16% Similarity=0.076 Sum_probs=219.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~Al 158 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||||.+.+++.+++ +.++||++ |+||||+|+
T Consensus 19 ~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfKdR~a~~~i~~l~--~~~~vv~~--ssGN~g~al 80 (311)
T 1ve5_A 19 HRTPLLTS--RLLD-GLL---------GKRLLLKAEHLQ-K-TGSFKARGALSKALALE--NPKGLLAV--SSGNHAQGV 80 (311)
T ss_dssp CCCCEEEC--HHHH-HHT---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSS--SCCCEEEE--CSSHHHHHH
T ss_pred CCCCceec--hhhH-Hhh---------CCeEEEEecCCC-C-cCCcHHHHHHHHHHHhc--CCCeEEEE--CCCcHHHHH
Confidence 89999999 7776 332 679999999998 7 99999999999999877 66789986 579999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhh
Q 012606 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (460)
Q Consensus 159 A~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~ 237 (460)
|++|+++|++|+||||+..+.. +..+++.||+ |+.+++. |+++.+.. +++
T Consensus 81 A~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~a----~~~--------------------- 131 (311)
T 1ve5_A 81 AYAAQVLGVKALVVMPEDASPY---KKACARAYGAEVVDRGVT-AKNREEVA----RAL--------------------- 131 (311)
T ss_dssp HHHHHHHTCCEEEECCCC--CC---HHHHHHHTTCEEECTTCC-TTTHHHHH----HHH---------------------
T ss_pred HHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECCC-HHHHHHHH----HHH---------------------
Confidence 9999999999999999987643 5567899998 9988874 66543322 111
Q ss_pred hhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.+..+..|+.| ..||...+||.+++.||++|+. .+ ..||+||+|+|||||++|++.+|++
T Consensus 132 ----------------~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~~~~~-~~~d~vvvpvG~Gg~~~Gi~~~~k~ 192 (311)
T 1ve5_A 132 ----------------QEETGYALIHP--FDDPLVIAGQGTAGLELLAQAGRMG-VFPGAVLAPVGGGGLLAGLATAVKA 192 (311)
T ss_dssp ----------------HHHHCCEECCS--SSSHHHHHHHHHHHHHHHHHHHHHT-CCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ----------------HHhcCcEecCC--CCCcchhhhccHHHHHHHHHHHhcC-CCCCEEEEccCchHHHHHHHHHHHH
Confidence 11122334334 3489999999999999999984 22 3699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHHH---HHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLISE---FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~~---~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
.++.++|||||+++++....+...+.... ...++..++ ....++...+.+++++.++.+.|+|+|+++++++|+
T Consensus 193 ~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl---~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 269 (311)
T 1ve5_A 193 LSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGV---RTLSLGERTFPILRERVDGILTVSEEALLEAERLLF 269 (311)
T ss_dssp HCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGG---CCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHH
T ss_pred hCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcC---CCCCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHH
Confidence 99999999999998754333211110000 001112111 111122345667788899999999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchh
Q 012606 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMF 438 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~ 438 (460)
+++||++||+ +|+++++++++.++ . +++||+||||||.|+.
T Consensus 270 ~~~gi~~eps-sa~alaa~~~~~~~--~-~~~vv~i~tgg~~d~~ 310 (311)
T 1ve5_A 270 TRTKQVVEPT-GALPLAAVLEHGAR--L-PQTLALLLSGGNRDFS 310 (311)
T ss_dssp HHTCBCCCGG-GGHHHHHHHHHGGG--S-CSEEEEEECBCCCCCC
T ss_pred HhcCceEchH-HHHHHHHHHhhhhc--c-CCEEEEEECCCCCCCC
Confidence 9999999997 89999999988754 4 8999999999999863
No 9
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.1e-47 Score=379.80 Aligned_cols=299 Identities=13% Similarity=0.072 Sum_probs=225.2
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~Al 158 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.++.++|.++||++ |+||||+|+
T Consensus 6 ~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tgS~K~R~a~~~l~~a~~~g~~~vv~~--ssGN~g~al 69 (318)
T 2rkb_A 6 VVTPLLES--WALS-QVA---------GMPVFLKCENVQ-P-SGSFKIRGIGHFCQEMAKKGCRHLVCS--SGGNAGIAA 69 (318)
T ss_dssp CCCCEEEE--HHHH-HHH---------TSCEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCEEEEC--CCSHHHHHH
T ss_pred ccCCceeh--HhhH-HHh---------CCeEEEEecCCC-C-CCCHHHHHHHHHHHHHHHcCCCEEEEE--CCchHHHHH
Confidence 79999999 8876 433 578999999998 7 899999999999999999999999985 459999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhh
Q 012606 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (460)
Q Consensus 159 A~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~ 237 (460)
|++|+++|++|+||||+..+. .+..+++.||+ |+.+++ .|++..+.. ++
T Consensus 70 A~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~Ga~V~~~~~-~~~~~~~~a----~~---------------------- 119 (318)
T 2rkb_A 70 AYAARKLGIPATIVLPESTSL---QVVQRLQGEGAEVQLTGK-VWDEANLRA----QE---------------------- 119 (318)
T ss_dssp HHHHHHHTCCEEEEECTTCCH---HHHHHHHHTTCEEEECCS-SHHHHHHHH----HH----------------------
T ss_pred HHHHHHcCCCEEEEECCCCcH---HHHHHHHhcCCEEEEECC-CHHHHHHHH----HH----------------------
Confidence 999999999999999998754 35567899998 999886 465433221 11
Q ss_pred hhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhc
Q 012606 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (460)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~ 317 (460)
+.+..+..|+.| ..||...+|+.+++.||++|+ + ..||+||+|+|||||++|++.+|++.
T Consensus 120 ---------------~~~~~~~~~~~~--~~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~~~~k~~ 179 (318)
T 2rkb_A 120 ---------------LAKRDGWENVPP--FDHPLIWKGHASLVQELKAVL--R-TPPGALVLAVGGGGLLAGVVAGLLEV 179 (318)
T ss_dssp ---------------HHHSTTEEECCS--SCSHHHHHHHHHHHHHHHHHS--S-SCCSEEEEECSSSHHHHHHHHHHHHH
T ss_pred ---------------HHHhcCCEEeCC--CCChhhccchhHHHHHHHHhc--C-CCCCEEEEeeCCCcHHHHHHHHHHHh
Confidence 112222334333 368999999999999999996 3 35999999999999999999999988
Q ss_pred C-CCCeEEEEeccCChhhHHHHHHhHH---HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 318 G-LPWEVTAIALVDTIDGYKQQEKNLI---SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 318 g-~~~~vigVe~~g~~~~~~~~~~~l~---~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
+ +.++|||||+++++........+.. +.. .++.+++ ..+.+++..+.+.+.+.++.+.|+|+|+++++++|+
T Consensus 180 ~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~-~t~a~gl---~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 255 (318)
T 2rkb_A 180 GWQHVPIIAMETHGAHCFNAAITAGKLVTLPDI-TSVAKSL---GAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLL 255 (318)
T ss_dssp TCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCC-CSSCGGG---CCSBCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCChHHHHHHHcCCcccCCCC-Cceeccc---CCCCCCHHHHHHHHHcCCEEEEECHHHHHHHHHHHH
Confidence 7 7799999999987653322111100 000 0111111 111222346677777788899999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHH-----hhhc--CCCCCeEEEEecCCC-cchhhHHHHHHHHhc
Q 012606 394 QLTGILVDPVYTLAAWEMATLL-----SDEK--LKQDADVVMLHTGGT-LGMFGLAQRYKSSFH 449 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~-----~~~~--~~~g~~Vv~i~TGG~-~~~~~~~~ry~~~~~ 449 (460)
+++||++||+ +|++++++++. .+.. +.++++||+|||||+ .+... ..+|+.+|+
T Consensus 256 ~~~gi~~eps-~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~~-l~~~~~~~~ 317 (318)
T 2rkb_A 256 DDERMLVEPA-CGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSRE-LQALKTHLG 317 (318)
T ss_dssp HHHCBCCCHH-HHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHHH-HHHHHHHTT
T ss_pred HhcCcEEchh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHH-HHHHHHHhc
Confidence 9999999996 78999987632 1111 456899999999998 77554 467777664
No 10
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=100.00 E-value=1.6e-47 Score=385.83 Aligned_cols=291 Identities=15% Similarity=0.134 Sum_probs=222.5
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++++ +.+ |.+||+|+|++| | +||||+|++.+++.++. +++.++||++ |+||||+|
T Consensus 25 ~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tGS~KdRga~~~i~~~~~~~~~~~vv~~--ssGN~g~a 88 (323)
T 1v71_A 25 NKTPVLTS--STVN-KEF---------VAEVFFKCENFQ-K-MGAFKFRGALNALSQLNEAQRKAGVLTF--SSGNHAQA 88 (323)
T ss_dssp CCCCEECC--HHHH-HHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHTTCCHHHHHHCEEEC--CSSHHHHH
T ss_pred CCCCceEh--HhhH-HHh---------CCeEEEEecCCC-C-cCCHHHHHHHHHHHHHHHhcCCCeEEEe--CCCcHHHH
Confidence 89999999 8876 433 679999999999 6 89999999999998754 3456789985 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||+..+. .+..+++.||| |+.+++. ++++.+.. +++
T Consensus 89 lA~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~a----~~l-------------------- 140 (323)
T 1v71_A 89 IALSAKILGIPAKIIMPLDAPE---AKVAATKGYGGQVIMYDRY-KDDREKMA----KEI-------------------- 140 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCH---HHHHHHHHTTCEEEEECTT-TTCHHHHH----HHH--------------------
T ss_pred HHHHHHHcCCCEEEECCCCCcH---HHHHHHHHcCCEEEEECCC-HHHHHHHH----HHH--------------------
Confidence 9999999999999999998754 35567899998 9999875 44433221 111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.+..+.+| ++ ++.||....||.+++.||++|+ +.||+||+|+|||||++|+++++++
T Consensus 141 -----------------~~~~~~~~-i~-~~~n~~~~~g~~t~~~Ei~~q~----~~~d~vv~~vG~GGt~~Gi~~~~k~ 197 (323)
T 1v71_A 141 -----------------SEREGLTI-IP-PYDHPHVLAGQGTAAKELFEEV----GPLDALFVCLGGGGLLSGSALAARH 197 (323)
T ss_dssp -----------------HHHHTCBC-CC-SSSSHHHHHHHTHHHHHHHHHH----CCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEe-cC-CCCCcchhhhHhHHHHHHHHhc----CCCCEEEEecCCcHHHHHHHHHHHH
Confidence 11122333 43 3478999999999999999997 2689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHHHH--HHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEF--KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~~~--~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
.++.++|||||+++++....+...+..... ..++..++ ....++...+.+++++.++.|.|+|+|+++++++|++
T Consensus 198 ~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl---~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 274 (323)
T 1v71_A 198 FAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGA---QTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAA 274 (323)
T ss_dssp HCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTS---CCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccc---cCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 999999999999987654332211100000 00111111 1111223456677888999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ 442 (460)
++||++||+ +|+++++++++.++ + ++++||+|||||+.|++.+.+
T Consensus 275 ~~gi~~eps-~a~alaa~~~~~~~-~-~~~~vv~i~tGg~~~~~~~~~ 319 (323)
T 1v71_A 275 RMKIVVEPT-GCLSFAAARAMKEK-L-KNKRIGIIISGGNVDIERYAH 319 (323)
T ss_dssp HTCCCCCGG-GGHHHHHHHHTGGG-G-TTCEEEEEECBCCCCHHHHHH
T ss_pred hcCeEEcHH-HHHHHHHHHHhHHh-c-CCCeEEEEeCCCCCCHHHHHH
Confidence 999999998 57999999987653 4 689999999999999887643
No 11
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=100.00 E-value=7.3e-47 Score=388.27 Aligned_cols=302 Identities=14% Similarity=0.111 Sum_probs=226.6
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHH
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~A 157 (460)
-++|||+++ ++|+ +.+ |++||+|+|++| | +||||+|++.++|.++.+.|.++||++ |+||||+|
T Consensus 44 ~~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tGSfKdRga~~~l~~a~~~g~~~vv~a--SsGN~g~a 107 (372)
T 1p5j_A 44 HVKTPIRDS--MALS-KMA---------GTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAKQGCAHFVCS--SAGNAGMA 107 (372)
T ss_dssp SCCCCEEEE--HHHH-HHH---------TSCEEEECGGGS-G-GGBTTHHHHHHHHHHHHHTTCCEEEEC--CSSHHHHH
T ss_pred CCCCCceEc--HhhH-HHh---------CCEEEEEEcCCC-C-CCChHHHHHHHHHHHHHHcCCCEEEEe--CCCHHHHH
Confidence 379999999 8876 433 679999999998 7 899999999999999988899999985 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||+..+. .+..+++.||| |+.+++ .|++..+.. ++
T Consensus 108 lA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~-~~~~a~~~a----~~--------------------- 158 (372)
T 1p5j_A 108 AAYAARQLGVPATIVVPGTTPA---LTIERLKNEGATCKVVGE-LLDEAFELA----KA--------------------- 158 (372)
T ss_dssp HHHHHHHHTCCEEEEECTTCCH---HHHHHHHHTTCEEEECCS-CHHHHHHHH----HH---------------------
T ss_pred HHHHHHHcCCcEEEEECCCCCH---HHHHHHHhcCCEEEEECC-CHHHHHHHH----HH---------------------
Confidence 9999999999999999998753 45667899998 999886 466433221 11
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
+.+..++.++++ +..||..++|+.+++.||++|+ + ..||+||+|+|||||++|++.+|++
T Consensus 159 ----------------l~~~~~~~~~v~-~~~n~~~~~G~~t~~~Ei~~ql--~-~~~d~vvvpvG~GG~~~Gi~~~~k~ 218 (372)
T 1p5j_A 159 ----------------LAKNNPGWVYIP-PFDDPLIWEGHASIVKELKETL--W-EKPGAIALSVGGGGLLCGVVQGLQE 218 (372)
T ss_dssp ----------------HHHHSTTEEECC-SSCCHHHHHHHTHHHHHHHHHC--S-SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ----------------HHHhcCCcEEeC-CCCCHHHHhhHHHHHHHHHHHc--C-CCCCEEEEecCCchHHHHHHHHHHH
Confidence 111212344443 2348999999999999999996 2 3599999999999999999999999
Q ss_pred cC-CCCeEEEEeccCChhhHHHHHHhHHHHHH--HHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 317 LG-LPWEVTAIALVDTIDGYKQQEKNLISEFK--RLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 317 ~g-~~~~vigVe~~g~~~~~~~~~~~l~~~~~--~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
.+ +.++|||||+++++....+...+....+. .++.+++ ..+.+++..+.+++.+.++.+.|+|+|+++++++|+
T Consensus 219 ~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl---~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~ 295 (372)
T 1p5j_A 219 CGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKAL---GVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFV 295 (372)
T ss_dssp TTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGG---CCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHH
T ss_pred hCCCCceEEEEecCCChHHHHHHHcCCceecCCCceeeccc---CCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHHH
Confidence 87 78999999999876533221111000000 0111111 111223356777777888899999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHH-----hhhc--CCCCCeEEEEecCCC-cchhhHHHHHHHHhc
Q 012606 394 QLTGILVDPVYTLAAWEMATLL-----SDEK--LKQDADVVMLHTGGT-LGMFGLAQRYKSSFH 449 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~-----~~~~--~~~g~~Vv~i~TGG~-~~~~~~~~ry~~~~~ 449 (460)
+++||++||+ +|++++++++. .+.. +.++++||+|+|||+ ++...+ .+|...++
T Consensus 296 ~~eGi~~eps-sa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~~~~~~~~-~~~~~~~~ 357 (372)
T 1p5j_A 296 DDEKILVEPA-CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQL-RALKEQLG 357 (372)
T ss_dssp HHTCCCCCHH-HHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHHH-HHHHHHHT
T ss_pred HHcCCeechh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHHH-HHHHHHhC
Confidence 9999999997 78999998742 1111 356899999999997 786655 45555554
No 12
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=100.00 E-value=5.9e-46 Score=384.76 Aligned_cols=297 Identities=12% Similarity=0.032 Sum_probs=223.7
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCC-ceEEEEeCCCCCCCCchhHHHhHHhhHHHHH--h----------------c
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLE--D----------------H 139 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g-~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~--~----------------~ 139 (460)
++|||+++ ++|+ +.+ | .+||+|+|++|+| +||||+|++.+++.++. + .
T Consensus 43 ~~TPL~~~--~~l~-~~~---------g~~~i~~K~E~~~~p-tgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~ 109 (398)
T 4d9i_A 43 RPTPLCAL--DDLA-NLF---------GVKKILVKDESKRFG-LNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAI 109 (398)
T ss_dssp CCCCEEEC--HHHH-HHH---------TSSEEEEEEGGGSTT-TTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCC
T ss_pred CCCCceeh--HHHH-HHh---------CCCcEEEEECCCCCC-CCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhc
Confidence 79999999 8887 444 5 5999999999967 89999999999998873 2 3
Q ss_pred CCC-eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhh
Q 012606 140 IVT-DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVA 217 (460)
Q Consensus 140 g~~-~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la 217 (460)
+.+ +||+ +|+||||+|+|++|+++|++|+||||+..+. .+..+++.||| |+.|++ .|+++.+.. +++
T Consensus 110 ~~~~~vv~--aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~Vv~v~~-~~~~a~~~a----~~~- 178 (398)
T 4d9i_A 110 GEKMTFAT--TTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQ---ERVDAILNLGAECIVTDM-NYDDTVRLT----MQH- 178 (398)
T ss_dssp SCCCEEEE--ECSSHHHHHHHHHHHHHTCEEEEEECTTCCH---HHHHHHHTTTCEEEECSS-CHHHHHHHH----HHH-
T ss_pred cCCCEEEE--ECCCHHHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHH----HHH-
Confidence 456 8888 4789999999999999999999999998754 35567899998 999987 466433321 111
Q ss_pred cCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecC----CCc--chHHHHHHHHHHHHHHHhHHcCC
Q 012606 218 GNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDHLLGR 291 (460)
Q Consensus 218 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~----g~~--np~~~~G~~t~~~Ei~eq~~~~~ 291 (460)
.+.. +.|+++. ++. +|....||.+++.||++|+...+
T Consensus 179 ------------------------------------~~~~-g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g 221 (398)
T 4d9i_A 179 ------------------------------------AQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMG 221 (398)
T ss_dssp ------------------------------------HHHH-TCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------HHHc-CCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcC
Confidence 1112 2355553 333 36788999999999999985211
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhc--CCCCeEEEEeccCChhhHHHHHHhH---HHHHHHHhccccccCCcccccchh
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICL--GLPWEVTAIALVDTIDGYKQQEKNL---ISEFKRLFGFLLKKSSLNEVDGEI 366 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~--g~~~~vigVe~~g~~~~~~~~~~~l---~~~~~~~i~~~~~p~~~~~~~~~~ 366 (460)
..||+||+|+|+|||++|++.++++. .+.++|||||+.+++....+...+. .....++++.++ ....++...
T Consensus 222 ~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~tia~gl---~~~~p~~~~ 298 (398)
T 4d9i_A 222 VTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGL---ACGEPNPLG 298 (398)
T ss_dssp CCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCCCC------CCTTC---CCSSCCHHH
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCCceeccc---cCCCCCHHH
Confidence 34999999999999999999999765 4679999999999866443321110 011113344332 111223345
Q ss_pred hHHhhhcCCCeEEeCcHHHHHHHHHHHHHhC----CcccccchHHHHHHHHHHh---------hh-cCCCCCeEEEEecC
Q 012606 367 VHWVERCRPRKFGNVFEGEIEACHRIAQLTG----ILVDPVYTLAAWEMATLLS---------DE-KLKQDADVVMLHTG 432 (460)
Q Consensus 367 ~~l~~~~~~~~~~v~d~e~~~a~r~La~~eG----I~vEP~ysgaa~Aal~~~~---------~~-~~~~g~~Vv~i~TG 432 (460)
|.+++++.++.+.|+|+|+++++++|++++| |++||+ +|++++|+++++ ++ .+.++++||+||||
T Consensus 299 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~eps-sa~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~i~tG 377 (398)
T 4d9i_A 299 WEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGES-GAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTE 377 (398)
T ss_dssp HHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHH-HHHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEEEECB
T ss_pred HHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECch-HHHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEEEeCC
Confidence 6778899999999999999999999999999 999997 899999998873 22 35678999999999
Q ss_pred CCcchhhH
Q 012606 433 GTLGMFGL 440 (460)
Q Consensus 433 G~~~~~~~ 440 (460)
||.++..+
T Consensus 378 G~~d~~~~ 385 (398)
T 4d9i_A 378 GDTDVKHY 385 (398)
T ss_dssp CCSSHHHH
T ss_pred CCCCHHHH
Confidence 99998763
No 13
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-46 Score=383.63 Aligned_cols=291 Identities=14% Similarity=0.071 Sum_probs=223.1
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..|+|||+++ ++|+ +.+ |++||+|+|++| | +||||+|++.+++.+|+++|.++||++ |+||||+
T Consensus 35 ~~g~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfKdR~a~~~l~~a~~~g~~~vv~a--SsGN~g~ 98 (360)
T 2d1f_A 35 LEGGTPLIAA--TNLS-KQT---------GCTIHLKVEGLN-P-TGSFKDRGMTMAVTDALAHGQRAVLCA--STGNTSA 98 (360)
T ss_dssp CCCCCCEEEC--HHHH-HHH---------SSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCSEEEEC--CSSHHHH
T ss_pred ccCCCCCeec--hhhH-HHh---------CCeEEEEECCCC-C-CcCHHHHHHHHHHHHHHHCCCCEEEEe--CCcHHHH
Confidence 3489999999 8887 433 679999999998 7 999999999999999999999999984 7899999
Q ss_pred HHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
|+|++|+++|++|+||||+. .+. .+..+++.||+ |+.+++. |++..+.. ++
T Consensus 99 alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~~-~~~~~~~a----~~------------------- 151 (360)
T 2d1f_A 99 SAAAYAARAGITCAVLIPQGKIAM---GKLAQAVMHGAKIIQIDGN-FDDCLELA----RK------------------- 151 (360)
T ss_dssp HHHHHHHHHTCEEEEEECSSCCCH---HHHHHHHHTTCEEEEBSSC-HHHHHHHH----HH-------------------
T ss_pred HHHHHHHHcCCcEEEEEcCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHHH----HH-------------------
Confidence 99999999999999999987 543 45668899998 9999874 66433221 11
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
+.+..++.|+++ + .||...+||.+++.||++|+. ..||+||+|+|||||++|++.+|
T Consensus 152 ------------------l~~~~~~~~~i~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~ 208 (360)
T 2d1f_A 152 ------------------MAADFPTISLVN-S-VNPVRIEGQKTAAFEIVDVLG---TAPDVHALPVGNAGNITAYWKGY 208 (360)
T ss_dssp ------------------HHHHCTTEEECS-T-TCHHHHHHHTHHHHHHHHHHS---SCCSEEEEECSSSHHHHHHHHHH
T ss_pred ------------------HHHhcCCeEEcC-C-CChhhhhhHHHHHHHHHHHcC---CCCCEEEEeCCchHHHHHHHHHH
Confidence 122233466665 3 899999999999999999972 35899999999999999999999
Q ss_pred HhcC------CCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 315 ICLG------LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 315 ~~~g------~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
++.. +.++|+|||++++............+.+++.++.+. |.. .+..+.+++++.++.+.|+|+|++++
T Consensus 209 k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~----~~~~~~~~~~~~~~~~~V~d~e~~~a 283 (360)
T 2d1f_A 209 TEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGS-PAS----WTSAVEAQQQSKGRFLAASDEEILAA 283 (360)
T ss_dssp HHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSS-CTT----HHHHHHHHHHHTCEEEEECHHHHHHH
T ss_pred HHHHhccccccCceEEEEecCCCCHHhcCCccCCccchHHHhCCCC-CCc----HHHHHHHHHHhCCeEEEECHHHHHHH
Confidence 8753 268999999998754321110000001111122110 100 01234567788899999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCC-cchhh
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT-LGMFG 439 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~-~~~~~ 439 (460)
+++|++++||++||+ ||++++++++++++ .+.++++||+|+|||+ .++..
T Consensus 284 ~~~l~~~eGi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~ 335 (360)
T 2d1f_A 284 YHLVARVEGVFVEPA-SAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDT 335 (360)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHHHHTSSCTTCEEEEEECBBGGGCHHH
T ss_pred HHHHHHhcCeeECch-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcCCHHH
Confidence 999999999999997 89999999988754 3557899999999987 45443
No 14
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=100.00 E-value=2.3e-46 Score=381.80 Aligned_cols=290 Identities=15% Similarity=0.047 Sum_probs=221.6
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCce--EEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC--FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH 154 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~--l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNh 154 (460)
..|+|||+++ ++|+ +.+ |.+ ||+|+|++| | +||||+|++.+++.+|+++|.++||++ |+|||
T Consensus 27 ~~g~TPL~~~--~~l~-~~~---------g~~~~i~~K~E~~~-p-tGS~KdR~a~~~l~~a~~~g~~~vv~~--SsGN~ 90 (352)
T 2zsj_A 27 YEGNTPLIEA--DNLA-RAI---------GFKGKIYLKYEGLN-P-TGSFKDRGMTLAISKAVEAGKRAVICA--STGNT 90 (352)
T ss_dssp CCCCCCEEEC--HHHH-HHH---------TCCSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCEEEEC--CSSHH
T ss_pred ccCCCCCeeh--HHHH-HHh---------CCCceEEEEECCCC-C-CccHHHHHHHHHHHHHHhcCCCEEEEe--CCchH
Confidence 4589999999 8876 433 566 999999999 7 999999999999999999999999984 78999
Q ss_pred HHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+++|++|+||||+. .+. .+..+++.||| |+.++++ |++..+.. ++
T Consensus 91 g~alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~~-~~~~~~~a----~~----------------- 145 (352)
T 2zsj_A 91 SASAAAYAARAGLRAYVLLPKGAVAI---GKLSQAMIYGAKVLAIQGT-FDDALNIV----RK----------------- 145 (352)
T ss_dssp HHHHHHHHHHHTCEEEEEEEGGGCCH---HHHHHHHHTTCEEEEESSC-HHHHHHHH----HH-----------------
T ss_pred HHHHHHHHHhcCCcEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHHH----HH-----------------
Confidence 9999999999999999999986 543 45668899998 9999874 65433221 11
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~ 312 (460)
+.+..+ .|+++ + .||...+||.+++.||++|+. ..||+||+|+|||||++|++.
T Consensus 146 --------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~ 199 (352)
T 2zsj_A 146 --------------------IGENFP-VEIVN-S-VNPYRIEGQKTAAFEICDTLG---EAPDYHFIPVGNAGNITAYWK 199 (352)
T ss_dssp --------------------HHHHSS-EEECS-T-TCTHHHHHHTHHHHHHHHHHS---SCCSEEEEECSSSHHHHHHHH
T ss_pred --------------------HHHHcC-cEECC-C-CCcchhhhHhHHHHHHHHHcC---CCCCEEEEeCCCcHHHHHHHH
Confidence 112222 45554 3 789999999999999999972 358999999999999999999
Q ss_pred HHHhcCC------CCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHH
Q 012606 313 GAICLGL------PWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 386 (460)
Q Consensus 313 ~~~~~g~------~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~ 386 (460)
+|++..+ .++|+|||++++............+.+++.++.+. |.. .+..+.+++++.++.+.|+|+|++
T Consensus 200 ~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~----~~~~~~~~~~~~~~~~~V~d~e~~ 274 (352)
T 2zsj_A 200 GFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGN-PYS----WKSALKAAQESGGKIDAVSDSEIL 274 (352)
T ss_dssp HHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSS-CTT----HHHHHHHHHHHTCEEEEECHHHHH
T ss_pred HHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCC-CCc----HHHHHHHHHHhCCeEEEECHHHHH
Confidence 9987632 68999999999754321110000001111122110 100 112344577888899999999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCC-cchhh
Q 012606 387 EACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT-LGMFG 439 (460)
Q Consensus 387 ~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~-~~~~~ 439 (460)
+++++|++++||++||+ ||++++++++++++ .+.++++||+|||||+ .++..
T Consensus 275 ~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~ 328 (352)
T 2zsj_A 275 YAYKLIASTEGVFCEPA-SAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDT 328 (352)
T ss_dssp HHHHHHHHHHCCCBCHH-HHHHHHHHHHHHHTTCCCSCCEEEEEECBBGGGCHHH
T ss_pred HHHHHHHHhCCeeECch-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccChHH
Confidence 99999999999999997 89999999988754 3557899999999987 56544
No 15
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=4.1e-46 Score=388.27 Aligned_cols=345 Identities=15% Similarity=0.097 Sum_probs=243.3
Q ss_pred ceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEe
Q 012606 37 GICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (460)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKr 113 (460)
|.---.|+||.+++.+.+ .++....+++.|++. ...+..+++.+|||+++ ++|+ +.+| +++||+|+
T Consensus 31 ~~~gg~~~p~~~~~~~~~i~~A~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~--~~Ls-~~~g--------g~~i~lK~ 99 (418)
T 1x1q_A 31 GPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHA--KRLS-EYWG--------GAQVFLKR 99 (418)
T ss_dssp TTEECCCCCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTCCSCCEEEC--HHHH-HHHT--------SSEEEEEE
T ss_pred CCcCCEECCchhhhhHHHHHHHHHHHhhChHHHHHHHHhhhcccCCCCCcEEh--HHhH-hhcC--------CceEEEEE
Confidence 444568999999888866 555544445555544 45555678889999999 8887 5443 57999999
Q ss_pred CCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 012606 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 114 Edln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga 193 (460)
||+| | +||||+|++.+++..++++|++++|++ +|+||||+|+|++|+++|++|+||||+..++.+..|+.+++.|||
T Consensus 100 E~l~-p-tGSfK~R~a~~~i~~a~~~g~~~vI~~-~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA 176 (418)
T 1x1q_A 100 EDLL-H-TGAHKINNTLGQALLARRMGKRRVIAE-TGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGA 176 (418)
T ss_dssp GGGS-G-GGBTTHHHHHHHHHHHHHHTCCEEEEE-CSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTC
T ss_pred ccCC-c-CccHHHHHHHHHHHHHHHcCCCEEEEe-cCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCC
Confidence 9999 6 899999999999888888898888864 356999999999999999999999997543333356678999998
Q ss_pred -EEEeCC--CchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCc-EEEecCC-Cc
Q 012606 194 -VTYVPR--THYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKK-VLIVNEG-AG 268 (460)
Q Consensus 194 -V~~v~~--~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~y~ip~g-~~ 268 (460)
|+.++. ..|+++.... .+ .| .+..++ .|+++.. ++
T Consensus 177 ~Vv~v~~~~~~~~~a~~~a---~~---------~~----------------------------~~~~~~~~~i~~~~~n~ 216 (418)
T 1x1q_A 177 EVRPVAAGSRTLKDATNEA---IR---------DW----------------------------ITNVRTTFYILGSVVGP 216 (418)
T ss_dssp EEEEECSTTSSHHHHHHHH---HH---------HH----------------------------HHTTTTEEECCCCSSSS
T ss_pred EEEEECCCCCCHHHHHHHH---HH---------HH----------------------------HHhCCCcEEEeCCccCC
Confidence 999985 2454322111 00 01 112223 4444432 23
Q ss_pred chH--HH-HHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhc-CCCCeEEEEeccCCh----hhHHHHH
Q 012606 269 DAV--AL-LGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTI----DGYKQQE 339 (460)
Q Consensus 269 np~--~~-~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~-g~~~~vigVe~~g~~----~~~~~~~ 339 (460)
+|. .+ .|+.+++.||++|+. ..+..||+||+|+||||+++|++.+|+++ ++.++|||||++++. ....+..
T Consensus 217 ~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~ 296 (418)
T 1x1q_A 217 HPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIG 296 (418)
T ss_dssp TTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSSSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccccHHHHHHHH
Confidence 443 33 488999999999984 11245999999999999999999999877 789999999999863 1111110
Q ss_pred HhH---HH--------------HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccc
Q 012606 340 KNL---IS--------------EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDP 402 (460)
Q Consensus 340 ~~l---~~--------------~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP 402 (460)
.+. .+ ....++.+++ ..+.+++..+.+.+...++.+.|+|+|+++++++|++++||+++|
T Consensus 297 ~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl---~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~~~ 373 (418)
T 1x1q_A 297 AGKRGVLHGSYMYLLYDHDGQITPAHSVSAGL---DYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEGIIPAL 373 (418)
T ss_dssp HTCEEEETTEEEEBCCC-------------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHHSCCBCH
T ss_pred cCCeeeeccccccccccccccccCCceeeecc---CCCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhcCCcccc
Confidence 000 00 0011222211 111223344556666778899999999999999999999999988
Q ss_pred cchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhhH
Q 012606 403 VYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGL 440 (460)
Q Consensus 403 ~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~~ 440 (460)
++|++++++++++++ +.++++||+|+|| |+.++..+
T Consensus 374 -~sa~a~a~a~~~~~~-~~~~~~Vv~vlsG~g~kd~~~~ 410 (418)
T 1x1q_A 374 -ESAHAIAYAAKVVPE-MDKDQVVVINLSGRGDKDVTEV 410 (418)
T ss_dssp -HHHHHHHHHHHHTTT-SCTTCEEEEEECBBGGGTHHHH
T ss_pred -hHHHHHHHHHHHHHh-cCCCCeEEEEECCCCCCCHHHH
Confidence 588999999887653 4568999999999 56787654
No 16
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=100.00 E-value=4.1e-46 Score=379.72 Aligned_cols=291 Identities=15% Similarity=0.073 Sum_probs=219.5
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~ 156 (460)
..|+|||++++.++|+ +.+ |++||+|+|++| | +||||+|++.+++.+|+++|.++||++ |+||||+
T Consensus 25 ~~g~TPL~~~~~~~l~-~~~---------g~~v~~K~E~~~-p-tgS~KdR~a~~~l~~a~~~g~~~vv~~--SsGN~g~ 90 (351)
T 3aey_A 25 LEGSTPLIPLKGPEEA-RKK---------GIRLYAKYEGLN-P-TGSFKDRGMTLAVSKAVEGGAQAVACA--STGNTAA 90 (351)
T ss_dssp CCCCCCEEECCCCHHH-HTT---------TCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCSEEEES--CSSHHHH
T ss_pred CCCCCCeeecCchhhH-HHh---------CCeEEEEecCCC-C-cccHHHHHHHHHHHHHHhcCCCEEEEe--CCCHHHH
Confidence 3489999987323444 222 679999999999 7 999999999999999999999999984 7899999
Q ss_pred HHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHH
Q 012606 157 AVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (460)
Q Consensus 157 AlA~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~ 234 (460)
|+|++|+++|++|+||||+. .+. .+..+++.||| |+.++++ |++..+.. ++
T Consensus 91 alA~~a~~~G~~~~iv~p~~~~~~---~k~~~~~~~GA~V~~v~~~-~~~~~~~a----~~------------------- 143 (351)
T 3aey_A 91 SAAAYAARAGILAIVVLPAGYVAL---GKVAQSLVHGARIVQVEGN-FDDALRLT----QK------------------- 143 (351)
T ss_dssp HHHHHHHHHTSEEEEEEETTCSCH---HHHHHHHHTTCEEEEEESC-HHHHHHHH----HH-------------------
T ss_pred HHHHHHHHcCCCEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHHH----HH-------------------
Confidence 99999999999999999987 553 45668899998 9999874 65433221 11
Q ss_pred HhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHH
Q 012606 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (460)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~ 314 (460)
+.+..+ .|+++ + .||...+||.+++.||++|+. ..||+||+|+|||||++|++.+|
T Consensus 144 ------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~~~~ 199 (351)
T 3aey_A 144 ------------------LTEAFP-VALVN-S-VNPHRLEGQKTLAFEVVDELG---DAPHYHALPVGNAGNITAHWMGY 199 (351)
T ss_dssp ------------------HHHHSS-EEECS-T-TCHHHHHHHHHHHHHHHHHHS---SCCSEEEEECSSSHHHHHHHHHH
T ss_pred ------------------HHHhcC-cEecC-C-CCccceeeeeeHHHHHHHHcC---CCCCEEEEecCchHHHHHHHHHH
Confidence 112222 45554 3 789999999999999999972 35899999999999999999999
Q ss_pred HhcCC------CCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 315 ICLGL------PWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 315 ~~~g~------~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
++..+ .++|+|||++++............+.+++.++.+. +.. .+..+.+++++.++.+.|+|+|++++
T Consensus 200 k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~----~~~~~~~~~~~~~~~~~V~d~e~~~a 274 (351)
T 3aey_A 200 KAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGN-PAS----WQGAVRAKEESGGVIEAVTDEEILFA 274 (351)
T ss_dssp HHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSS-CTT----HHHHHHHHHHHTCEEEEECHHHHHHH
T ss_pred HHHHhccccCCCCeEEEEecCCCChhhcCcccCCccchhHhhcCCC-CCC----HHHHHHHHHHhCCeEEEECHHHHHHH
Confidence 87642 68999999998754221110000001111121110 000 11234457788899999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhh-cCCCCCeEEEEecCCC-cchh
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT-LGMF 438 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-~~~~g~~Vv~i~TGG~-~~~~ 438 (460)
+++|++++||++||+ ||+++++++++.++ .+.++++||+|+|||+ .++.
T Consensus 275 ~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~ 325 (351)
T 3aey_A 275 YRYLAREEGIFCEPA-SAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPA 325 (351)
T ss_dssp HHHHHHHTCCCBCHH-HHHHHHHHHHHHHTTCSCTTCEEEEEECBBGGGCHH
T ss_pred HHHHHHhCCEEECch-HHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCCHH
Confidence 999999999999997 89999999988754 3557899999999986 4433
No 17
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=100.00 E-value=1.2e-45 Score=372.68 Aligned_cols=276 Identities=12% Similarity=0.081 Sum_probs=213.7
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
++|||+++ ++|+ +.+-.. ....+.+||+|+|++| | +||||+|++.+++.+|+++|. ++||++ |+|||
T Consensus 14 g~TPL~~~--~~l~-~~~~~~--~~~~g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~l~~~~~vv~a--SsGN~ 84 (325)
T 3dwg_A 14 GNTPLVGL--QRLS-PRWDDG--RDGPHVRLWAKLEDRN-P-TGSIKDRPAVRMIEQAEADGLLRPGATILEP--TSGNT 84 (325)
T ss_dssp SCCCEEEC--TTTS-SBSSCB--TTBCCEEEEEEETTSS-T-TSBTTHHHHHHHHHHHHHTTCCCTTCEEEEE--CSSHH
T ss_pred CCCCcEEc--cccc-hhhccc--ccCCCcEEEEEECCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHH
Confidence 79999999 8887 431000 0001689999999999 6 899999999999999999987 889985 67999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+++|++|+||||+..+. .+..+++.||| |+.++.. .++++.+. +++
T Consensus 85 g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~----------------- 140 (325)
T 3dwg_A 85 GISLAMAARLKGYRLICVMPENTSV---ERRQLLELYGAQIIFSAAEGGSNTAVAT----AKE----------------- 140 (325)
T ss_dssp HHHHHHHHHHHTCEEEEEEESSSCH---HHHHHHHHHTCEEEEECSTTTHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHH----HHH-----------------
Confidence 9999999999999999999998754 35567899998 9999863 34432221 111
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHH-HHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+.+..++.| ++.+..||... .||.+++.||++|+ + .||+||+|+|||||++|++
T Consensus 141 --------------------l~~~~~~~~-~~~~~~np~~~~~g~~t~~~Ei~~q~--~--~~d~vv~pvG~GG~~aGi~ 195 (325)
T 3dwg_A 141 --------------------LAATNPSWV-MLYQYGNPANTDSHYCGTGPELLADL--P--EITHFVAGLGTTGTLMGTG 195 (325)
T ss_dssp --------------------HHHHCTTSB-CCCTTTCHHHHHHHHHTHHHHHHHHC--T--TCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHHhCCCeE-eCCCCCCHHHHHHHHHHHHHHHHHhc--C--CCCEEEEecCchHHHHHHH
Confidence 112222333 34456788876 59999999999996 2 4999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~ 391 (460)
.++++.++.++|||||+++++.. ..+ ++++.+..| ..+.+++.++.+.|+|+|+++++++
T Consensus 196 ~~~k~~~p~~~vigVe~~~~~~~--~~~--------~~i~~~~~~----------~~~~~~~~d~~~~V~d~e~~~a~~~ 255 (325)
T 3dwg_A 196 RFLREHVANVKIVAAEPRYGEGV--YAL--------RNMDEGFVP----------ELYDPEILTARYSVGAVDAVRRTRE 255 (325)
T ss_dssp HHHHHHSTTCEEEEEEEECCGGG--GCC--------SSGGGCCCC----------TTCCGGGCSEEEEEEHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEeeCCCcch--hcc--------CcccCCcCc----------ccccHhhCCeEEEECHHHHHHHHHH
Confidence 99999899999999999997643 111 122322221 1245567888999999999999999
Q ss_pred HHHHhCCcccccchHHHHHHHHHHhhhcCCCCCe--EEEEecCC
Q 012606 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDAD--VVMLHTGG 433 (460)
Q Consensus 392 La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~--Vv~i~TGG 433 (460)
|++++||++||+ +|++++|+++++++...++++ ||+|||||
T Consensus 256 l~~~egi~~eps-sa~a~aa~~~~~~~~~~~g~~~~Vv~i~~g~ 298 (325)
T 3dwg_A 256 LVHTEGIFAGIS-TGAVLHAALGVGAGALAAGERADIALVVADA 298 (325)
T ss_dssp HHHHHCCCBCHH-HHHHHHHHHHHHHHHHHHTCCEEEEEEECBB
T ss_pred HHHHcCceechh-HHHHHHHHHHHHHHhccCCCCCeEEEEECCC
Confidence 999999999997 899999999887543234677 99999996
No 18
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=100.00 E-value=4.2e-45 Score=365.14 Aligned_cols=269 Identities=16% Similarity=0.073 Sum_probs=211.5
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccchH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GNh 154 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.+++++|. ++||++ |+|||
T Consensus 9 ~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~--ssGN~ 72 (303)
T 2v03_A 9 GNTPLVKL--QRMG-PDN---------GSEVWLKLEGNN-P-AGSVKDRAALSMIVEAEKRGEIKPGDVLIEA--TSGNT 72 (303)
T ss_dssp SCCCEEEC--SSSS-CSS---------SCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEE--CSSHH
T ss_pred CCCCcEEC--cccc-ccc---------CCEEEEEeccCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCEEEEE--CCcHH
Confidence 89999999 8887 433 679999999998 7 899999999999999988887 789986 56999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+++|++|+||||+..+. .+..+++.||+ |+.++.. .|+++.+. |++
T Consensus 73 g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~----a~~----------------- 128 (303)
T 2v03_A 73 GIALAMIAALKGYRMKLLMPDNMSQ---ERRAAMRAYGAELILVTKEQGMEGARDL----ALE----------------- 128 (303)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTTHHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHH-----------------
Confidence 9999999999999999999998754 35567899998 9999863 35432221 111
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHH-HHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+.+..++.| ..+..||.... ||.+++.||++|+ + ..||+||+|+|||||++|++
T Consensus 129 --------------------~~~~~~~~~--~~~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~ 183 (303)
T 2v03_A 129 --------------------MANRGEGKL--LDQFNNPDNPYAHYTTTGPEIWQQT--G-GRITHFVSSMGTTGTITGVS 183 (303)
T ss_dssp --------------------HHHTTSCEE--CCTTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHHhCCCcc--cCCcCChhhHHHhcCCcHHHHHHHh--C-CCCCEEEEEeCccHhHHHHH
Confidence 112212233 23346787655 7899999999996 2 25999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~ 391 (460)
.++++.++.++|||||+++++.... + +.++.+..| ..+.....++.+.|+|+|+++++++
T Consensus 184 ~~~k~~~p~~~vigve~~~~~~~~~--~--------~gl~~~~~~----------~~~~~~~~d~~~~V~d~e~~~a~~~ 243 (303)
T 2v03_A 184 RFMREQSKPVTIVGLQPEEGSSIPG--I--------RRWPTEYLP----------GIFNASLVDEVLDIHQRDAENTMRE 243 (303)
T ss_dssp HHHHTSSSCCEEEEEEECTTCCCTT--C--------CCCCGGGCC----------TTCCGGGCSEEEEECHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEcCCCCccccc--C--------CcCCCCCCC----------cccchHHCCEEEEECHHHHHHHHHH
Confidence 9999989999999999998754221 1 112222111 1233456678999999999999999
Q ss_pred HHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCc
Q 012606 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (460)
Q Consensus 392 La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~ 435 (460)
|++++||++||+ +|+++++++++.++. ++++||+|+|||+.
T Consensus 244 l~~~~gi~~~ps-sa~alaa~~~~~~~~--~~~~vv~i~tg~~~ 284 (303)
T 2v03_A 244 LAVREGIFCGVS-SGGAVAGALRVAAAN--PDAVVVAIICDRGD 284 (303)
T ss_dssp HHHHHCCCBCHH-HHHHHHHHHHHHHHS--TTCEEEEEECBBSG
T ss_pred HHHHcCceEcHH-HHHHHHHHHHHHHHC--CCCeEEEEECCCCc
Confidence 999999999997 899999999887543 68899999999874
No 19
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.7e-45 Score=368.57 Aligned_cols=277 Identities=15% Similarity=0.059 Sum_probs=198.7
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccch
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GN 153 (460)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.++.++|. ++||+ +|+||
T Consensus 12 ~~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~--assGN 75 (308)
T 2egu_A 12 IGDTPAVKL--NRIV-DED---------SADVYLKLEFMN-P-GSSVKDRIALAMIEAAEKAGKLKPGDTIVE--PTSGN 75 (308)
T ss_dssp SSCCCEEEC--CSSS-CTT---------SCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEE--ECCHH
T ss_pred cCCCCeEEC--Cccc-ccC---------CCEEEEEecccC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEE--eCCCH
Confidence 389999999 8887 433 679999999998 7 899999999999999998887 67887 47899
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 154 hg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
||+|+|++|+++|++|+||||+..+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 76 ~g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~~---------------- 132 (308)
T 2egu_A 76 TGIGLAMVAAAKGYKAVLVMPDTMSL---ERRNLLRAYGAELVLTPGAQGMRGAIAK----AEE---------------- 132 (308)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESCSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHH----------------
Confidence 99999999999999999999988754 35667899998 9999864 23432221 111
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHH-HHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
+.+..+. ++|.++.||..+ .||.+++.||++|+. ..||+||+|+|||||++|+
T Consensus 133 ---------------------l~~~~~~--~~~~~~~n~~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi 186 (308)
T 2egu_A 133 ---------------------LVREHGY--FMPQQFKNEANPEIHRLTTGKEIVEQMG---DQLDAFVAGVGTGGTITGA 186 (308)
T ss_dssp ---------------------HHHHHCC--BCC--------------CHHHHHHHHHT---TCCCEEEEEGGGTHHHHHH
T ss_pred ---------------------HHHHCcC--CcCCcCCChhHHHHHHHHHHHHHHHHcC---CCCCEEEEeeCCchhHHHH
Confidence 1111222 446666788764 689999999999973 2599999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
+.++++.++.++|||||+++++... ..... ....+.++.+..| +.+.....++.+.|+|+|++++++
T Consensus 187 ~~~~k~~~~~~~vigve~~~~~~~~-~~~~~--~~~~~g~~~~~~~----------~~~~~~~~d~~~~v~d~e~~~a~~ 253 (308)
T 2egu_A 187 GKVLREAYPNIKIYAVEPADSPVLS-GGKPG--PHKIQGIGAGFVP----------DILDTSIYDGVITVTTEEAFAAAR 253 (308)
T ss_dssp HHHHHHHCTTCEEEEEEECC------------------------------------CCCCCCSCSEEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEeCCCcccc-CCCCC--CcccCccCCCCCC----------HhHHHHhcCeEEEECHHHHHHHHH
Confidence 9999999999999999999875422 11111 0111222221111 123345567789999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~ 434 (460)
+|++++||++|| |+|++++++++++++. .++++||+|+||+.
T Consensus 254 ~l~~~~gi~~ep-ssa~a~aa~~~~~~~~-~~~~~vv~i~tg~g 295 (308)
T 2egu_A 254 RAAREEGILGGI-SSGAAIHAALKVAKEL-GKGKKVLAIIPSNG 295 (308)
T ss_dssp HHHHHHCCCBCH-HHHHHHHHHHHHHHHH-CTTCEEEEEECBBG
T ss_pred HHHHHhCceEcH-HHHHHHHHHHHHHHhc-CCCCeEEEEECCCC
Confidence 999999999999 6899999999887644 46899999999963
No 20
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=100.00 E-value=1.2e-44 Score=363.77 Aligned_cols=281 Identities=14% Similarity=0.007 Sum_probs=212.9
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccch
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GN 153 (460)
.++|||+++ ++| . + |.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++ |+||
T Consensus 11 ~~~TPL~~l--~~l-~--~---------g~~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~--ssGN 72 (316)
T 1y7l_A 11 IGNTPLVRL--KHF-G--H---------NGNVVVKIEGRN-P-SYSVKCRIGANMVWQAEKDGTLTKGKEIVDA--TSGN 72 (316)
T ss_dssp CCCCCEEEC--SSS-S--S---------TTCEEEEETTSS-G-GGBTHHHHHHHHHHHHHHTTSSCTTCEEEES--CCSH
T ss_pred cCCCCcEEC--ccC-C--C---------CCEEEEEeccCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcH
Confidence 389999999 766 2 2 678999999998 7 899999999999999998887 788884 6799
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 154 hg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
||+|+|++|+++|++|+||||+..+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 73 ~g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~~---------------- 129 (316)
T 1y7l_A 73 TGIALAYVAAARGYKITLTMPETMSL---ERKRLLCGLGVNLVLTEGAKGMKGAIAK----AEE---------------- 129 (316)
T ss_dssp HHHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHH----HHH----------------
Confidence 99999999999999999999998754 35667899998 9999864 24432221 111
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHH-HHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
+.+..+..|+++.++.||.... ||.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 130 ---------------------~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi 185 (316)
T 1y7l_A 130 ---------------------IVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDT--D-GKVDVVVAGVGTGGSITGI 185 (316)
T ss_dssp ---------------------HHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHT--T-TCEEEEEEECSSSHHHHHH
T ss_pred ---------------------HHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCCccccHHHH
Confidence 1222334423334567887655 6999999999997 3 2599999999999999999
Q ss_pred HHHHHhcC-CCCeEEEEeccCChhhHHHHHHh-HH---HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHH
Q 012606 311 GLGAICLG-LPWEVTAIALVDTIDGYKQQEKN-LI---SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGE 385 (460)
Q Consensus 311 ~~~~~~~g-~~~~vigVe~~g~~~~~~~~~~~-l~---~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~ 385 (460)
+.+|++++ +.++|||||+++++.... ...+ .. ....+.++.+ ..++.+.+...++.+.|+|+|+
T Consensus 186 ~~~~k~~~~~~~~vi~ve~~~~~~~~~-~~~g~~~~~~~~~~~gi~~~----------~~~~~~~~~~~d~~~~V~d~e~ 254 (316)
T 1y7l_A 186 SRAIKLDFGKQITSVAVEPVESPVISQ-TLAGEEVKPGPHKIQGIGAG----------FIPKNLDLSIIDRVETVDSDTA 254 (316)
T ss_dssp HHHHHHTSCCCCEEEEEEETTSCHHHH-HHHTCCCCCCCCSCTTSCCS----------SCCTTCCGGGCCEEEEECHHHH
T ss_pred HHHHHHhCCCCCEEEEEecCCCccccc-cccCCccCCCCcccCcCCCC----------CCCchhhHhhCCEEEEECHHHH
Confidence 99999988 999999999999754322 1100 00 0000111111 0122345667788999999999
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCc
Q 012606 386 IEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (460)
Q Consensus 386 ~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~ 435 (460)
++++++|++++||++||+ +|++++++++++++...++++||+|+|||..
T Consensus 255 ~~a~~~l~~~~gi~~eps-sa~~laa~~~~~~~~~~~~~~vv~i~tg~g~ 303 (316)
T 1y7l_A 255 LATARRLMAEEGILAGIS-SGAAVAAADRLAKLPEFADKLIVVILPSASE 303 (316)
T ss_dssp HHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBCS
T ss_pred HHHHHHHHHhhCCeEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEECCCCc
Confidence 999999999999999997 8999999998875432368899999999753
No 21
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A
Probab=100.00 E-value=2.1e-45 Score=383.22 Aligned_cols=344 Identities=14% Similarity=0.059 Sum_probs=232.0
Q ss_pred eEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCC
Q 012606 39 CNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDD 115 (460)
Q Consensus 39 ~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEd 115 (460)
---.|+||++++.+.+ .++....+++.|++. ...+..|++.+|||+++ ++|+ +.+| +++||+||||
T Consensus 37 ~gg~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~--~~Ls-~~~g--------g~~i~lK~E~ 105 (422)
T 2o2e_A 37 WGGRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEA--TRLS-QHAG--------SARIFLKRED 105 (422)
T ss_dssp ----CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEEC--GGGG-GGTT--------TCEEEEECGG
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEC--hhhH-hhcC--------CCeEEEEEcC
Confidence 4457999999988877 677666667777666 66667788899999999 9988 5543 5799999999
Q ss_pred CCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-E
Q 012606 116 LLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-V 194 (460)
Q Consensus 116 ln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V 194 (460)
+| | +||||+|.+.+++..|+++|++++|+. +|+||||+|+|++|+++|++|+||||+..++.+..|+.+|+.||| |
T Consensus 106 ln-p-tGSfK~R~a~~~~~~a~~~g~~~vI~~-~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~V 182 (422)
T 2o2e_A 106 LN-H-TGSHKINNVLGQALLARRMGKTRVIAE-TGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEV 182 (422)
T ss_dssp GC-C-SSTTHHHHHHHHHHHHHHTTCCEEEEE-ESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEE
T ss_pred CC-C-CCcHHHHHHHHHHHHHHHcCCCeEEEe-cCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEE
Confidence 99 5 899999999998888999999888863 245999999999999999999999998644333457778999998 9
Q ss_pred EEeCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCC-Ccch-
Q 012606 195 TYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDA- 270 (460)
Q Consensus 195 ~~v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g-~~np- 270 (460)
+.|+.+ .+++.. .++ .+ .|.+ +.....|+++.. +++|
T Consensus 183 v~v~~~~~~~~da~--~~a--~~--------~~~~---------------------------~~~~~~yi~~s~~g~~p~ 223 (422)
T 2o2e_A 183 VAVQTGSKTLKDAI--NEA--FR--------DWVA---------------------------NADNTYYCFGTAAGPHPF 223 (422)
T ss_dssp EEECSTTSCHHHHH--HHH--HH--------HHHH---------------------------HTTTEEECCCCSSSCCCC
T ss_pred EEECCCCCCHHHHH--HHH--HH--------HHHh---------------------------cCCCcEEEeCCccCCCCc
Confidence 999753 344321 111 00 1110 111223444332 2333
Q ss_pred -HHHH-HHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCCh----h---hHHHHHH
Q 012606 271 -VALL-GVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI----D---GYKQQEK 340 (460)
Q Consensus 271 -~~~~-G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~----~---~~~~~~~ 340 (460)
..+. |+.+++.||.+|+. ..+..||+||+|||+||+++|++.+|+ .++.++|||||++++. . .+.....
T Consensus 224 ~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~-~~p~v~vigVe~~g~~~~~~~~~~~l~~g~~ 302 (422)
T 2o2e_A 224 PTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFL-DDPGVRLVGFEAAGDGVETGRHAATFTAGSP 302 (422)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGT-TCTTCEEEEEEECC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHh-cCCCCeEEEEecCCCcccchhHHHHHHcCCc
Confidence 3343 67788999999973 222469999999999999999988886 4788999999999862 1 1111100
Q ss_pred hHHHH--------------HHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchH
Q 012606 341 NLISE--------------FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTL 406 (460)
Q Consensus 341 ~l~~~--------------~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysg 406 (460)
...++ ...++..++ ..+.+++..+.+.+...+..+.|+|+|+++++++|++++||+++| +++
T Consensus 303 ~~~~g~~~~~~~~~~g~~~~~~tia~gl---~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~-esa 378 (422)
T 2o2e_A 303 GAFHGSFSYLLQDEDGQTIESHSISAGL---DYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAI-ESA 378 (422)
T ss_dssp -----------------------------------------------CCEEEEECHHHHHHHHHHHHHHHCCCCCH-HHH
T ss_pred eeccccchhhcccccccccCCceeeccc---CCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcCCccCc-hHH
Confidence 00000 001122111 111122233445666678899999999999999999999999976 588
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEEecCC-CcchhhHH
Q 012606 407 AAWEMATLLSDEKLKQDADVVMLHTGG-TLGMFGLA 441 (460)
Q Consensus 407 aa~Aal~~~~~~~~~~g~~Vv~i~TGG-~~~~~~~~ 441 (460)
++++++++++++ +.++++||+|+||+ +.++....
T Consensus 379 ~A~a~a~~l~~~-~~~~~~vvvilsG~g~kd~~~~~ 413 (422)
T 2o2e_A 379 HAVAGALKLGVE-LGRGAVIVVNLSGRGDKDVETAA 413 (422)
T ss_dssp HHHHHHHHHHHH-HCTTCEEEEECCSCSSSHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCEEEEEeCCCCCCCHHHHH
Confidence 899999887654 45689999999995 47776643
No 22
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=100.00 E-value=1.8e-44 Score=360.45 Aligned_cols=277 Identities=14% Similarity=0.033 Sum_probs=214.9
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----C--eEEEeCCcc
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----T--DLVTCGGCQ 151 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~--~VVt~Gas~ 151 (460)
.++|||+++ ++|+ +.+ |.+||+|+|++| | +||||+|++.+++.++.+.|. + +||+ +|+
T Consensus 7 ~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~--ass 70 (304)
T 1ve1_A 7 IGKTPVVRL--AKVV-EPD---------MAEVWVKLEGLN-P-GGSIKDRPAWYMIKDAEERGILRPGSGQVIVE--PTS 70 (304)
T ss_dssp CCCCCEEEC--CSSS-CTT---------SCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEE--SCC
T ss_pred cCCCCcEEC--cccc-ccc---------CCEEEEEecccC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCccEEEE--eCC
Confidence 389999999 8887 433 679999999998 7 899999999999999998886 6 8887 478
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCc-hhhHHHHHHHHhhhhhcCCCCccchhhh
Q 012606 152 SAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEI 229 (460)
Q Consensus 152 GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~la~~~g~~~w~~~~ 229 (460)
||||+|+|++|+++|++|+||||+..+. .+..+++.||+ |+.++... |+++.+. +++
T Consensus 71 GN~g~a~A~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~Ga~V~~~~~~~~~~~~~~~----a~~-------------- 129 (304)
T 1ve1_A 71 GNTGIGLAMIAASRGYRLILTMPAQMSE---ERKRVLKAFGAELVLTDPERRMLAAREE----ALR-------------- 129 (304)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEETTCCH---HHHHHHHHTTCEEEEECTTTHHHHHHHH----HHH--------------
T ss_pred cHHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHH--------------
Confidence 9999999999999999999999988653 45668899998 99998642 4432221 111
Q ss_pred hHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHH-HHHHHHHHHHhHHcCCCCCCEEEEecCCchhHH
Q 012606 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAV 308 (460)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G-~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~ 308 (460)
+.+. ++. +++.++.||..+.| |.+++.||++|+ + ..||+||+|+|||||++
T Consensus 130 -----------------------l~~~-~~~-~~~~~~~n~~~~~g~~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~ 181 (304)
T 1ve1_A 130 -----------------------LKEE-LGA-FMPDQFKNPANVRAHYETTGPELYEAL--E-GRIDAFVYGSGTGGTIT 181 (304)
T ss_dssp -----------------------HHHH-HTC-BCCCTTTCHHHHHHHHHTHHHHHHHHT--T-TCCSEEEEECSSSHHHH
T ss_pred -----------------------HHhc-CCC-EeCCCCCChhHHHHHHHHHHHHHHHHc--C-CCCCEEEEecCCchhHH
Confidence 1111 122 34556789999888 699999999997 2 25999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 309 GLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 309 Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
|++.++++..+.++|||||+++++... ...... ...+.++.+. .++.+.+...++.+.|+|+|++++
T Consensus 182 Gi~~~~k~~~~~~~vi~ve~~~~~~~~-~g~~~~--~~~~gl~~~~----------~~~~~~~~~~d~~~~V~d~e~~~a 248 (304)
T 1ve1_A 182 GVGRYLKERIPHVKVIAVEPARSNVLS-GGKMGQ--HGFQGMGPGF----------IPENLDLSLLDGVIQVWEEDAFPL 248 (304)
T ss_dssp HHHHHHHTTCTTCEEEEEEEGGGCTTT-TCCCCC--CSCTTSCCSS----------CCTTCCGGGCSEEEEECHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEecCCCcccc-CCCCCC--cccCCCCCCC----------CChhhhhhhCCEEEEECHHHHHHH
Confidence 999999999999999999999875321 100000 0001112111 112345567788999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~ 434 (460)
+++|++++||++||+ +|++++++++++++ +.++++||+|+|||.
T Consensus 249 ~~~l~~~~gi~~eps-sa~a~aa~~~~~~~-~~~~~~vv~i~tg~g 292 (304)
T 1ve1_A 249 ARRLAREEGLFLGMS-SGGIVWAALQVARE-LGPGKRVACISPDGG 292 (304)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHHHH-HCTTCEEEEEECBBS
T ss_pred HHHHHHHhCcEEcHH-HHHHHHHHHHHHHh-cCCCCeEEEEECCCC
Confidence 999999999999997 89999999988754 346889999999975
No 23
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=100.00 E-value=1.9e-45 Score=379.25 Aligned_cols=340 Identities=14% Similarity=0.045 Sum_probs=240.0
Q ss_pred eeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCC
Q 012606 41 VRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLL 117 (460)
Q Consensus 41 ~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln 117 (460)
-.|.||+++..+.+ .++....++++|++. ...+..+++.+|||+++ ++|+ +.+| +++||+|+|++|
T Consensus 8 g~~~p~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~--~~l~-~~~g--------~~~i~~K~E~~~ 76 (388)
T 1v8z_A 8 GQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYA--KRLT-EKIG--------GAKIYLKREDLV 76 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEEC--HHHH-HHHT--------SSEEEEEEGGGS
T ss_pred CEeCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCCCCCceeh--HhhH-hhcC--------CceEEEEeccCC
Confidence 46889999987766 566555556666664 44444567788999999 8887 4442 379999999998
Q ss_pred CCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEE
Q 012606 118 HPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTY 196 (460)
Q Consensus 118 ~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~ 196 (460)
| +||||+|++.+++..++++|.++||+. +|+||||+|+|++|+++|++|+||||+...+....|+.+++.||| |+.
T Consensus 77 -p-tGSfK~R~a~~~i~~a~~~g~~~vv~~-~ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~ 153 (388)
T 1v8z_A 77 -H-GGAHKTNNAIGQALLAKFMGKTRLIAE-TGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIP 153 (388)
T ss_dssp -T-TSBTHHHHHHHHHHHHHHTTCCEEEEE-ESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEE
T ss_pred -C-CCCHHHHHHHHHHHHHHHcCCCEEEEe-cCchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEE
Confidence 7 899999999999998889999888863 256999999999999999999999997532222245667899998 999
Q ss_pred eCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcc--hH-
Q 012606 197 VPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD--AV- 271 (460)
Q Consensus 197 v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~n--p~- 271 (460)
++.. .|++..... .+ .+.+..++.++++.++.| |.
T Consensus 154 ~~~~~~~~~~a~~~a----~~------------------------------------~~~~~~~~~~~~~~~~~n~~p~~ 193 (388)
T 1v8z_A 154 VNSGSRTLKDAINEA----LR------------------------------------DWVATFEYTHYLIGSVVGPHPYP 193 (388)
T ss_dssp ECSTTSSHHHHHHHH----HH------------------------------------HHHHHTTTEEECCCSSCSSTTHH
T ss_pred ECCCCCCHHHHHHHH----HH------------------------------------HHHHhCCCceEecCCccCCCCch
Confidence 9752 344322111 00 011122344556555433 32
Q ss_pred -HH-HHHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHH--
Q 012606 272 -AL-LGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEF-- 346 (460)
Q Consensus 272 -~~-~G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~-- 346 (460)
.+ .|+.+++.||++|+. ..+..||+||+|+|||||++|++.+++ .++.++|||||++++..........+..+.
T Consensus 194 ~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~~~~~~vigve~~~~~~~~~~~~~~l~~g~~~ 272 (388)
T 1v8z_A 194 TIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-NDKKVKLVGVEAGGKGLESGKHSASLNAGQVG 272 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEE
T ss_pred hHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-hCCCceEEEEccCccccchhhhhHHHhcCCce
Confidence 23 378899999999983 112368999999999999999999998 478999999999986321000000000000
Q ss_pred -------------------HHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHH
Q 012606 347 -------------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLA 407 (460)
Q Consensus 347 -------------------~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysga 407 (460)
..++.++ ...+.++...+.+.+...++.+.|+|+|+++++++|++++||+++| |+|+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~tia~g---l~~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~-~sa~ 348 (388)
T 1v8z_A 273 VFHGMLSYFLQDEEGQIKPTHSIAPG---LDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPAL-ESAH 348 (388)
T ss_dssp EETTEEEEECBCTTSCBCCCCCSSTT---SCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCH-HHHH
T ss_pred eccccccccccccccccCCCceeeec---cccCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCeecc-cHHH
Confidence 0011111 0111223344556677778899999999999999999999999988 5889
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCCC-cchhhH
Q 012606 408 AWEMATLLSDEKLKQDADVVMLHTGGT-LGMFGL 440 (460)
Q Consensus 408 a~Aal~~~~~~~~~~g~~Vv~i~TGG~-~~~~~~ 440 (460)
+++++.+++++ +.++++||+|+|||+ .++..+
T Consensus 349 a~a~a~~l~~~-~~~~~~vv~i~tg~g~k~~~~~ 381 (388)
T 1v8z_A 349 AVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIV 381 (388)
T ss_dssp HHHHHHHHHHT-SCTTCEEEEEECBBSGGGHHHH
T ss_pred HHHHHHHHHHh-cCCCCEEEEEECCCCccCHHHH
Confidence 99999888754 457899999999975 676553
No 24
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=100.00 E-value=2.4e-44 Score=364.63 Aligned_cols=281 Identities=14% Similarity=0.060 Sum_probs=213.4
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeE-EEeCCccc
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDL-VTCGGCQS 152 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~V-Vt~Gas~G 152 (460)
-++|||+++ +++. . + |.+||+|+|++| | +||||+|++.+++.+|++.|. ++| |++ |+|
T Consensus 19 ig~TPL~~l--~~l~-~-~---------g~~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~a--SsG 81 (334)
T 3tbh_A 19 IGQTPALYL--NKLN-N-T---------KAKVVLKMECEN-P-MASVKDRLGFAIYDKAEKEGKLIPGKSIVVES--SSG 81 (334)
T ss_dssp SSCCCEEEC--CTTC-C-S---------SSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEE--CSS
T ss_pred cCCCCeEEC--Cccc-C-C---------CCEEEEEeCCCC-C-ccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCC
Confidence 389999999 7762 1 1 689999999999 6 899999999999999999987 774 775 569
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012606 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (460)
Q Consensus 153 Nhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 230 (460)
|||+|+|++|+++|++|+||||+..+. .+..+++.||| |+.++.. .|+++.+. +++
T Consensus 82 N~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~--------------- 139 (334)
T 3tbh_A 82 NTGVSLAHLGAIRGYKVIITMPESMSL---ERRCLLRIFGAEVILTPAALGMKGAVAM----AKK--------------- 139 (334)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH---------------
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCchHHHHH----HHH---------------
Confidence 999999999999999999999998754 35567899998 9999864 23322111 111
Q ss_pred HHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchH-HHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHH
Q 012606 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (460)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~G 309 (460)
+.+..++.|++ .+..||. ...||.+++.||++|+ + ..||+||+|+|||||++|
T Consensus 140 ----------------------~~~~~~~~~~i-~~~~np~n~~~g~~t~~~Ei~~q~--~-~~~d~vv~pvG~GG~~aG 193 (334)
T 3tbh_A 140 ----------------------IVAANPNAVLA-DQFATKYNALIHEETTGPEIWEQT--N-HNVDCFIAGVGTGGTLTG 193 (334)
T ss_dssp ----------------------HHHHCTTEEEC-CTTTCHHHHHHHHHTHHHHHHHHT--T-SCCSEEEEECSSSHHHHH
T ss_pred ----------------------HHHhCCCEEEC-CccCChhHHHHHHHHHHHHHHHHh--C-CCCCEEEeccCCcHhHHH
Confidence 11222344444 3456776 3458889999999996 2 379999999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHH
Q 012606 310 LGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (460)
Q Consensus 310 l~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (460)
++.++++..+.++|||||+++++.... .... ....+.++.+. .++.+.+++.++.+.|+|+|+++++
T Consensus 194 i~~~~k~~~p~~~vigVe~~~~~~~~~-g~~~--~~~~~gi~~~~----------~~~~~~~~~~d~~~~V~d~e~~~a~ 260 (334)
T 3tbh_A 194 VARALKKMGSHARIVAVEPTESPVLSG-GKPG--PHKIQGIGPGF----------VPDVLDRSLIDEVLCVAGDDAIETA 260 (334)
T ss_dssp HHHHHHHTTCCCEEEEEEETTSCTTTT-CCCC--CCSCTTSCCSS----------CCTTCCGGGCSEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEeeCCchHhhC-CCcC--CeecCCCCCCc----------CCHHHHHHhCCEEEEECHHHHHHHH
Confidence 999999999999999999998764321 0000 00001122111 1223556788899999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcch
Q 012606 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGM 437 (460)
Q Consensus 390 r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~ 437 (460)
++|++++||++||+ +|++++++++++++.+.++++||+|+|| |+..+
T Consensus 261 ~~l~~~egi~~eps-sgaa~aa~~~~~~~~~~~g~~Vv~v~t~~g~ky~ 308 (334)
T 3tbh_A 261 LKLTRSDGVFCGFS-GGANVYAALKIAERPEMEGKTIVTVIPSFGERYL 308 (334)
T ss_dssp HHHHHHHCCCBCHH-HHHHHHHHHHHHHSGGGTTCEEEEEECBBGGGGT
T ss_pred HHHHHHcCeEEcHH-HHHHHHHHHHHHHhccCCcCeEEEEECCCCcccc
Confidence 99999999999997 8999999998876434578999999997 54443
No 25
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=100.00 E-value=7.2e-45 Score=381.25 Aligned_cols=309 Identities=13% Similarity=0.080 Sum_probs=227.4
Q ss_pred CCCCCcccccCCCCC---cccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHH-----HHhcCC---------
Q 012606 79 GGGPLGGISFLNNTC---PFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV--------- 141 (460)
Q Consensus 79 g~TPL~~~~~~~l~~---~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~-----a~~~g~--------- 141 (460)
++|||+++ ++|+. +.+|. ..+.+||+|+|++| |.+||||+|++.+++.. |++.|.
T Consensus 77 ~~TPL~~~--~~l~~~l~~~~g~-----~~~~~v~lK~E~~~-p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~ 148 (442)
T 3ss7_X 77 IESELVAI--PAMQKRLEKEYQQ-----PISGQLLLKKDSHL-PISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSK 148 (442)
T ss_dssp CCCCEEEC--HHHHHHHHHHHTC-----CCCSEEEEEEGGGC-TTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGG
T ss_pred CCCCcEEh--HhhhhHHHHhhCC-----CcCCeEEEeecCCC-CCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhh
Confidence 89999999 77540 11110 01479999999999 55799999999998875 778886
Q ss_pred ------------CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHH
Q 012606 142 ------------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEM 208 (460)
Q Consensus 142 ------------~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~ 208 (460)
.+||++ |+||||+|+|++|+++|++|+||||+..+. .++.+++.||| |+.+++ .|++..+.
T Consensus 149 l~~~~~r~~~~~~~vv~a--SsGNhg~avA~~aa~~G~~~~Ivmp~~~~~---~k~~~~r~~GA~Vv~v~~-~~~~a~~~ 222 (442)
T 3ss7_X 149 LLSPEFKQFFSQYSIAVG--STGNLGLSIGIMSARIGFKVTVHMSADARA---WKKAKLRSHGVTVVEYEQ-DYGVAVEE 222 (442)
T ss_dssp GGSHHHHHHHHTSEEEEE--CSSHHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEESS-CHHHHHHH
T ss_pred hhhhhhhhhccCcEEEEE--CCCHHHHHHHHHHHHhCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECC-CHHHHHHH
Confidence 367763 789999999999999999999999998754 35667899998 999987 46543221
Q ss_pred HHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHH
Q 012606 209 LKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL 288 (460)
Q Consensus 209 ~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~ 288 (460)
|++ +.+..+..|+++. ..++....||.+++.||++|+.
T Consensus 223 ----a~~-------------------------------------~a~~~~~~~~i~~-~n~~~~~~G~~t~g~Ei~eQl~ 260 (442)
T 3ss7_X 223 ----GRK-------------------------------------AAQSDPNCFFIDD-ENSRTLFLGYSVAGQRLKAQFA 260 (442)
T ss_dssp ----HHH-------------------------------------HHHTCTTEEECCT-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHH-------------------------------------HHHhCCCceeCCC-CChHHHHHHHHHHHHHHHHHHH
Confidence 111 1222345676654 2334567899999999999984
Q ss_pred -cC----CCCCCEEEEecCCchhHHHHHHHHHhc-CCCCeEEEEeccCChhhHHHHHHhH-----HHHH---HHHhcccc
Q 012606 289 -LG----RKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNL-----ISEF---KRLFGFLL 354 (460)
Q Consensus 289 -~~----~~~pD~vvv~vGtGgt~~Gl~~~~~~~-g~~~~vigVe~~g~~~~~~~~~~~l-----~~~~---~~~i~~~~ 354 (460)
.+ +..||+||+|+|+||+++|++.+|+++ +++++|||||+++++........+. +.++ ..++.+++
T Consensus 261 ~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl 340 (442)
T 3ss7_X 261 QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGL 340 (442)
T ss_dssp HHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGG
T ss_pred hhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHhhc
Confidence 22 335789999999999999999999986 8999999999999876433221111 1110 01111111
Q ss_pred ccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhh-------cCCC----C
Q 012606 355 KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-------KLKQ----D 423 (460)
Q Consensus 355 ~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~-------~~~~----g 423 (460)
.++.+....+.+++++.++.+.|+|+|+++++++|++++||++||+ +|+++|+++++++. .+.+ +
T Consensus 341 ---~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~eps-saaalAa~~~l~~~~~~~~~~~l~~~~~~~ 416 (442)
T 3ss7_X 341 ---AVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPS-ALAGMAGPQRVCASVSYQQMHGFSAEQLRN 416 (442)
T ss_dssp ---CCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGG-GGGGGGHHHHHHHCHHHHHHHTCCHHHHHT
T ss_pred ---CCCCCchhHHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHH-HHHHHHHHHHHHhchhhHHhcCCCcccCCC
Confidence 1222233456778899999999999999999999999999999997 78999999988752 1222 7
Q ss_pred CeEEEEecCCCcchhhHHHHHHHH
Q 012606 424 ADVVMLHTGGTLGMFGLAQRYKSS 447 (460)
Q Consensus 424 ~~Vv~i~TGG~~~~~~~~~ry~~~ 447 (460)
++||+|||||+....+..+.|+.+
T Consensus 417 ~~vv~i~TGG~~~~~~~~~~~~~~ 440 (442)
T 3ss7_X 417 TTHLVWATGGGMVPEEEMNQYLAK 440 (442)
T ss_dssp CEEEEEECBCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHh
Confidence 899999999988777766667543
No 26
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=100.00 E-value=1.8e-45 Score=377.17 Aligned_cols=296 Identities=13% Similarity=0.055 Sum_probs=225.0
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHH-hcCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~-~~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |.+||+|+|++| | +||||||.+.+++..+. +.+.++||++ |+||||+|
T Consensus 59 ~~TPL~~l--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfKdRga~~~i~~l~~~~~~~~vv~a--ssGN~g~a 122 (366)
T 3iau_A 59 IESPLELA--EKLS-DRL---------GVNFYIKREDKQ-R-VFSFKLRGAYNMMSNLSREELDKGVITA--SAGNHAQG 122 (366)
T ss_dssp CCCCEEEC--HHHH-HHH---------TSEEEEEEGGGS-T-TSBTTHHHHHHHHHTSCHHHHHHCEEEE--CSSHHHHH
T ss_pred CCCCcEEh--hhhh-Hhh---------CCEEEEEecCCC-C-CcchHHHHHHHHHHHHHHhCCCCEEEEe--CCCHHHHH
Confidence 89999999 8887 443 679999999999 7 89999999999988753 3345678986 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||+..+.. +..+++.||+ |+.+++ .|+++.+.. +++
T Consensus 123 ~A~aa~~~G~~~~iv~P~~~~~~---k~~~~~~~GA~V~~v~~-~~~~~~~~a----~~~-------------------- 174 (366)
T 3iau_A 123 VALAGQRLNCVAKIVMPTTTPQI---KIDAVRALGGDVVLYGK-TFDEAQTHA----LEL-------------------- 174 (366)
T ss_dssp HHHHHHHTTCCEEEEECTTCCHH---HHHHHHHTTCEEEECCS-SHHHHHHHH----HHH--------------------
T ss_pred HHHHHHHhCCceEEEeCCCCCHH---HHHHHHHCCCeEEEECc-CHHHHHHHH----HHH--------------------
Confidence 99999999999999999977643 4557899998 999985 466543322 111
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.+..+..|+.| ..||....||.+++.||++|+ ..||+||+|+|+|||++|++.++++
T Consensus 175 -----------------~~~~~~~~i~~--~~n~~~i~g~~t~~~Ei~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~ 231 (366)
T 3iau_A 175 -----------------SEKDGLKYIPP--FDDPGVIKGQGTIGTEINRQL----KDIHAVFIPVGGGGLIAGVATFFKQ 231 (366)
T ss_dssp -----------------HHHHTCEECCS--SSSHHHHHHHHHHHHHHHHHC----CSEEEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEecCC--CCChHHHHHHHHHHHHHHHhc----CCCCEEEEccCchHHHHHHHHHHHH
Confidence 11122334333 457888899999999999996 3799999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhHHH--HHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNLIS--EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l~~--~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~ 394 (460)
.++.++|+||++.++.........+... ....++..++ ....++...+.+++++.++.+.|+|+|++++++++++
T Consensus 232 ~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl---~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 308 (366)
T 3iau_A 232 IAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGV---AVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYD 308 (366)
T ss_dssp HSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGG---CCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhh---cCCCCcHHHHHHHHhcCCCceeECHHHHHHHHHHHHH
Confidence 9999999999999875533221111000 0000111111 1112334567788899999999999999999999999
Q ss_pred HhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhHHHHHH
Q 012606 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYK 445 (460)
Q Consensus 395 ~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~~~ry~ 445 (460)
++|+++||+ +|++++|+++++++...++++||+||||||.++..+.+-..
T Consensus 309 ~~gi~~ep~-sa~alaa~~~~~~~~~~~g~~Vv~i~tGgn~d~~~l~~~~~ 358 (366)
T 3iau_A 309 EGRNILETS-GAVAIAGAAAYCEFYKIKNENIVAIASGANMDFSKLHKVTE 358 (366)
T ss_dssp HHSCCCCHH-HHHHHHHHHHHHHHTTCCSCEEEEEECBCCCCGGGHHHHHH
T ss_pred HcCcEEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999997 89999999988764322489999999999999887655443
No 27
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=100.00 E-value=1.9e-44 Score=366.62 Aligned_cols=279 Identities=12% Similarity=0.046 Sum_probs=214.7
Q ss_pred cCCCCCcccccCCCCCc----ccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCC
Q 012606 78 HGGGPLGGISFLNNTCP----FLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGG 149 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~----~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Ga 149 (460)
.++|||+++ ++|+ + .+ |++||+|+|++| | +||||+|++.+++.+|.+.|. ++||++
T Consensus 21 ~g~TPL~~~--~~l~-~~~~~~~---------g~~v~~K~E~~~-p-tGSfKdR~a~~~l~~a~~~g~~~~g~~vv~a-- 84 (343)
T 2pqm_A 21 IGGTPLVEL--HGVT-EHPRIKK---------GTRILVKLEYFN-P-MSSVKDRVGFNIVYQAIKDGRLKPGMEIIES-- 84 (343)
T ss_dssp SSCCCEEEC--CGGG-CSTTSCT---------TCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTSSCTTCEEEEE--
T ss_pred cCCCCeEEC--Cccc-ccccccc---------CcEEEEEeccCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEE--
Confidence 389999999 8887 4 22 679999999998 7 899999999999999988887 688886
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchh
Q 012606 150 CQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCN 227 (460)
Q Consensus 150 s~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~ 227 (460)
|+||||+|+|++|+++|++|+||||+..+. .+..+++.||| |+.++.. .|+++.+. +++
T Consensus 85 SsGN~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~------------ 145 (343)
T 2pqm_A 85 TSGNTGIALCQAGAVFGYRVNIAMPSTMSV---ERQMIMKAFGAELILTEGKKGMPGAIEE----VNK------------ 145 (343)
T ss_dssp CSSHHHHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH------------
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHH----HHH------------
Confidence 569999999999999999999999998753 35667899998 9999863 24432221 111
Q ss_pred hhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHH-HHHHHHHHHHHHhHHcCCCCCCEEEEecCCchh
Q 012606 228 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTT 306 (460)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt 306 (460)
+.+..+.+|+++.++.||..+ .||.+++ ||++|+ + ..||+||+|+|||||
T Consensus 146 -------------------------~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~--~-~~~d~vvvpvG~GG~ 196 (343)
T 2pqm_A 146 -------------------------MIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDT--D-GEVDIVVSAVGTSGT 196 (343)
T ss_dssp -------------------------HHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHT--T-TCEEEEEEECSSSHH
T ss_pred -------------------------HHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHc--C-CCCCEEEEecCCchh
Confidence 122233454566677788754 6899999 999997 2 259999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHH
Q 012606 307 AVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 386 (460)
Q Consensus 307 ~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~ 386 (460)
++|++.++++.++.++|||||+++++.... .... ....+.++.+. .++.+.+...++.+.|+|+|++
T Consensus 197 ~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~-~~~~--~~~~~gl~~~~----------~~~~~~~~~~d~~~~Vsd~e~~ 263 (343)
T 2pqm_A 197 VIGVAEKLKEKKKGIKIIAVEPEESAVLEG-KAKG--PHGIQGIGAGF----------IPDIYKKEFVDEIIPIKTQDAW 263 (343)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEEGGGCTTTT-CCCC--CCCCTTCCCSS----------CCTTCCGGGCCEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEecCCCccccc-CCCC--CeecCccCCCC----------CCHHHHHHhCCeEEEECHHHHH
Confidence 999999999999999999999998743221 0000 00001111111 1223456677889999999999
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012606 387 EACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (460)
Q Consensus 387 ~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~ 434 (460)
+++++|++++||++||+ +|++++++++++++...++++||+|+|||.
T Consensus 264 ~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~vv~i~tg~g 310 (343)
T 2pqm_A 264 KMARAVVKYDGIMCGMS-SGAAILAGLKEAEKPENEGKTIVIIVPSCG 310 (343)
T ss_dssp HHHHHHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBG
T ss_pred HHHHHHHHHhCCeEchh-HHHHHHHHHHHHHhcCCCCCeEEEEEcCCC
Confidence 99999999999999997 899999999887543336899999999974
No 28
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=100.00 E-value=3.1e-44 Score=360.27 Aligned_cols=281 Identities=16% Similarity=0.077 Sum_probs=212.6
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccch
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GN 153 (460)
.++|||+++ ++|+ +.+ +.+||+|+|++| | +||||+|++.+++.+++++|. ++||+ +|+||
T Consensus 14 ~~~TPL~~~--~~l~-~~~---------g~~i~~K~E~~~-p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~--assGN 77 (313)
T 2q3b_A 14 IGRTPLVRL--RRVT-DGA---------VADIVAKLEFFN-P-ANSVKDRIGVAMLQAAEQAGLIKPDTIILE--PTSGN 77 (313)
T ss_dssp SCCCCEEEC--SSSC-TTC---------CSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEE--ECSSH
T ss_pred cCCCceEEC--cccc-ccc---------CcEEEEEehhcC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCEEEE--eCCCH
Confidence 389999999 8887 432 679999999998 7 899999999999999998887 67887 47899
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 154 hg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
||+|+|++|+++|++|+||||+..+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 78 ~g~alA~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~----a~~---------------- 134 (313)
T 2q3b_A 78 TGIALAMVCAARGYRCVLTMPETMSL---ERRMLLRAYGAELILTPGADGMSGAIAK----AEE---------------- 134 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEeCCCCCHHHHHHH----HHH----------------
Confidence 99999999999999999999998754 35567899998 9999863 24432221 111
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHH-HHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G-~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
+.+..+.. +++.++.||....| |.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 135 ---------------------l~~~~~~~-~~~~~~~n~~~~~~~~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi 189 (313)
T 2q3b_A 135 ---------------------LAKTDQRY-FVPQQFENPANPAIHRVTTAEEVWRDT--D-GKVDIVVAGVGTGGTITGV 189 (313)
T ss_dssp ---------------------HHHHCTTE-ECCCTTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHH
T ss_pred ---------------------HHHhCCCE-EeCCCCCChhhHHHHHHHHHHHHHHHc--C-CCCCEEEEccCcchhHHHH
Confidence 11222333 45667789988755 899999999996 2 2699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
+.++++.++.++|||||+++++.... ...+. ...+.++.+. .++.+.....++.+.|+|+|++++++
T Consensus 190 ~~~~k~~~~~~~vi~ve~~~~~~~~~-~~~g~--~~~~g~~~~~----------~~~~~~~~~~d~~~~v~d~e~~~a~~ 256 (313)
T 2q3b_A 190 AQVIKERKPSARFVAVEPAASPVLSG-GQKGP--HPIQGIGAGF----------VPPVLDQDLVDEIITVGNEDALNVAR 256 (313)
T ss_dssp HHHHHHHCTTCEEEEEEETTSCTTTT-CCCCC--CCCTTSCCSS----------CCTTCCGGGCCEEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEeeCCCccccC-CCCCC--cccCCcCCCC----------CChhhhHhhccEEEEECHHHHHHHHH
Confidence 99999999999999999998754211 10000 0001111111 11223455677899999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcc
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLG 436 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~ 436 (460)
+|++++||++|| |+|++++++++++++...++++||+|+|| |...
T Consensus 257 ~l~~~~gi~~ep-ssa~alaa~~~~~~~~~~~~~~vv~v~~~~g~ky 302 (313)
T 2q3b_A 257 RLAREEGLLVGI-SSGAATVAALQVARRPENAGKLIVVVLPDFGERY 302 (313)
T ss_dssp HHHHHHSCCBCH-HHHHHHHHHHHHHTCGGGTTCEEEEEECBBSGGG
T ss_pred HHHHHcCceEch-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 999999999999 68999999998865431257888866665 5443
No 29
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=100.00 E-value=2.4e-45 Score=379.90 Aligned_cols=343 Identities=14% Similarity=0.062 Sum_probs=245.4
Q ss_pred ceeEeeecHHHHHHHHhh--hhhhhcCCCcchhhh-hccccccccCCCCCcccccCCCCCcccCCcccccCCCceEEEEe
Q 012606 37 GICNVRMSGEELLSRLLD--RKWALTSPDSKIHQI-KLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (460)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKr 113 (460)
|..--.|+||.+|+.|.+ .++....+++.|++. ...+..+++.+|||+++ ++|+ +.+ |++||+|+
T Consensus 9 ~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~--~~l~-~~~---------g~~i~lK~ 76 (396)
T 1qop_B 9 GEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKC--QNIT-AGT---------RTTLYLKR 76 (396)
T ss_dssp TTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEEC--HHHH-TTS---------SEEEEEEE
T ss_pred CCcCCEeCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCCCCcEEh--hhhh-hcc---------CCeEEEEe
Confidence 455668999999998877 677666677777766 55555678889999999 8887 433 68999999
Q ss_pred CCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 012606 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 114 Edln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga 193 (460)
|++| | +||||+|.+.+++..|+++|.++||+. +|+||||+|+|++|+++|++|+||||+...+....|+.+|+.|||
T Consensus 77 E~l~-p-tGSfK~R~a~~~~~~a~~~g~~~vi~e-~ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA 153 (396)
T 1qop_B 77 EDLL-H-GGAHKTNQVLGQALLAKRMGKSEIIAE-TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGA 153 (396)
T ss_dssp GGGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEEE-ESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTC
T ss_pred ccCC-C-CCcHHHHHHHHHHHHHHHcCcCEEEEe-cCchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCC
Confidence 9999 6 899999999999988999999999973 256999999999999999999999998522222245678999998
Q ss_pred -EEEeCCC--chhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCc--
Q 012606 194 -VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG-- 268 (460)
Q Consensus 194 -V~~v~~~--~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~-- 268 (460)
|+.++.+ .|++.... +.+ .| .+..++.++++.+..
T Consensus 154 ~V~~v~~~~~~~~~a~~~----a~~--------~~----------------------------~~~~~~~~~~~~~~~n~ 193 (396)
T 1qop_B 154 EVIPVHSGSATLKDACNE----ALR--------DW----------------------------SGSYETAHYMLGTAAGP 193 (396)
T ss_dssp EEEEECSTTSSHHHHHHH----HHH--------HH----------------------------HHHTTTEEECCCSSCSS
T ss_pred EEEEECCCCCCHHHHHHH----HHH--------HH----------------------------HhccCCcEEEeCCcCCC
Confidence 9999753 34432211 100 01 111223444544432
Q ss_pred chH--HHH-HHHHHHHHHHHhHH-cCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChh-------hHHH
Q 012606 269 DAV--ALL-GVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID-------GYKQ 337 (460)
Q Consensus 269 np~--~~~-G~~t~~~Ei~eq~~-~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~-------~~~~ 337 (460)
+|. .+. |+.+++.||++|+. ..+..||+||+|+|||||++|++.+++ .++.++|||||++++.. .+..
T Consensus 194 ~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l~~ 272 (396)
T 1qop_B 194 HPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGHGIETGEHGAPLKH 272 (396)
T ss_dssp TTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHH
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCccccchhhHHHHHc
Confidence 333 334 78889999999983 112469999999999999999999998 57899999999998531 1111
Q ss_pred HHHhHHHH--------------HHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHHHHhCCccccc
Q 012606 338 QEKNLISE--------------FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPV 403 (460)
Q Consensus 338 ~~~~l~~~--------------~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La~~eGI~vEP~ 403 (460)
......++ -..++.+++ ..+.+++..+.+.+...++.+.|+|+|+++++++|++++||+++|
T Consensus 273 g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl---~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~- 348 (396)
T 1qop_B 273 GRVGIYFGMKAPMMQTADGQIEESYSISAGL---DFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPAL- 348 (396)
T ss_dssp SEEEEETEEEEEECBCTTSCBCCCCCSSGGG---CCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCH-
T ss_pred CCeeeeccchhhhcccccCCcCCCceeeccC---CCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCcccc-
Confidence 10000000 000111111 111233344566677778899999999999999999999999887
Q ss_pred chHHHHHHHHHHhhhcCC-CCCeEEEEecCC-CcchhhH
Q 012606 404 YTLAAWEMATLLSDEKLK-QDADVVMLHTGG-TLGMFGL 440 (460)
Q Consensus 404 ysgaa~Aal~~~~~~~~~-~g~~Vv~i~TGG-~~~~~~~ 440 (460)
++|++++++.+++++ +. ++++||+|+||| +.++...
T Consensus 349 ~sa~a~a~a~~l~~~-~~~~~~~vv~i~tg~g~k~~~~~ 386 (396)
T 1qop_B 349 ESSHALAHALKMMRE-QPEKEQLLVVNLSGRGDKDIFTV 386 (396)
T ss_dssp HHHHHHHHHHHHHHH-STTSCEEEEEEECBBCGGGHHHH
T ss_pred chHHHHHHHHHHHHh-cCCCCCeEEEEECCCCCCCHHHH
Confidence 578899998887654 44 688999999996 5776654
No 30
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=100.00 E-value=1.7e-44 Score=367.02 Aligned_cols=277 Identities=14% Similarity=0.050 Sum_probs=207.4
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC-----CeEEEeCCccch
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~-----~~VVt~Gas~GN 153 (460)
|+|||+++ ++|+ +.+ |++||+|+|++| | +||||+|.+.++|.+|+++|. ++||++ |+||
T Consensus 34 G~TPLv~~--~~Ls-~~~---------G~~IylK~E~ln-p-tGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~a--SsGN 97 (344)
T 3vc3_A 34 GRTPLVYL--NKVT-EGC---------GAYVAVKQEMMQ-P-TASIADRPAYAMITDAEEKNLITPGKTTLIEP--TSGN 97 (344)
T ss_dssp CCCCEEEC--CSTT-TTC---------CSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEE--CSSH
T ss_pred CCCceEEC--cccc-hhh---------CCEEEEEecCCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEe--CCcH
Confidence 78999999 9998 543 789999999999 6 899999999999999988874 678874 6799
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 154 hg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
||+|+|++|+++|++|+||||+.+|.. +..+++.||| |+.|+... ........+ .+
T Consensus 98 ~g~alA~~aa~~G~~~~IvmP~~~~~~---k~~~~~~~GA~Vv~v~~~~-~~~~~~~~~--~~----------------- 154 (344)
T 3vc3_A 98 MGISMAFMAAMKGYKMVLTMPSYTSLE---RRVTMRAFGAELILTDPAK-GMGGTVKKA--YE----------------- 154 (344)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCHH---HHHHHHHTTCEEEEECGGG-HHHHHHHHH--HH-----------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHHcCCEEEEECCCC-cchHHHHHH--HH-----------------
Confidence 999999999999999999999988754 4567899998 99997642 111111110 00
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
+....++.+ .+.+..||.. ..|+.+++.||++|+ + +.||+||+|+||||+++|++
T Consensus 155 --------------------~~~~~~~~~-~~~~~~np~~~~a~~~t~g~EI~eq~--~-~~~d~vv~~vGgGG~~~Gi~ 210 (344)
T 3vc3_A 155 --------------------LLENTPNAH-MLQQFSNPANTQVHFETTGPEIWEDT--N-GQVDIFVMGIGSGGTVSGVG 210 (344)
T ss_dssp --------------------HHHHSTTEE-CCCTTTCHHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHhhccCce-eccccccchhHHHHHHHHHHHHHHHh--C-CCceEEEEecCCccchHHHh
Confidence 011122333 3455667764 456789999999996 3 47999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhhHHHHH-HhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 312 LGAICLGLPWEVTAIALVDTIDGYKQQE-KNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 312 ~~~~~~g~~~~vigVe~~g~~~~~~~~~-~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
.++++..|+++|||||+.+++....... ...+ +.++.... ...+..+..+..+.|+|+|++++++
T Consensus 211 ~~~k~~~p~v~vigVep~~s~~l~~~~~~~~~i----~g~g~~~~----------~~~~~~~~~d~~v~v~d~eai~a~~ 276 (344)
T 3vc3_A 211 QYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHI----TGNGVGFK----------PDILDLDVMEKVLEVSSEDAVNMAR 276 (344)
T ss_dssp HHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSC----TTSCCSSC----------CTTCCGGGCSEEEEECHHHHHHHHH
T ss_pred hhhHhhCCCceEEEEcCCCChhhcCCCCCCeeE----eccccccc----------CcccchhhceEEEEECHHHHHHHHH
Confidence 9999999999999999988653211100 0000 01111111 1112345567788999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
+|++++||+++|+ ||++++|++++++....++++||+|+|++
T Consensus 277 ~L~~~eGi~v~~s-sga~~~aAl~~a~~~~~~g~~VV~il~d~ 318 (344)
T 3vc3_A 277 VLALKEGLMVGIS-SGANTVAALRLAQLPENKGKLIVTVHPSF 318 (344)
T ss_dssp HHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBB
T ss_pred HHHHHCCCEEehh-HHHHHHHHHHHhccccCCCCEEEEEECCC
Confidence 9999999999996 77888888877764445789999999763
No 31
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-44 Score=373.94 Aligned_cols=279 Identities=13% Similarity=0.028 Sum_probs=214.3
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC-----CeEEEeCCcc
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQ 151 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~-----~~VVt~Gas~ 151 (460)
..|+|||+++ ++++ +.+ |++||+|+|++| | +||||+|++.+++.+|+++|. ++||++ |+
T Consensus 120 ~ig~TPLv~l--~~Ls-~~~---------g~~I~lK~E~ln-p-tGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~a--Ss 183 (430)
T 4aec_A 120 LIGKTPMVYL--NSIA-KGC---------VANIAAKLEIME-P-CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP--TS 183 (430)
T ss_dssp GSSCCCEEEC--CGGG-TTC---------SSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEE--CS
T ss_pred cCCCCCeEEC--hhhh-hhc---------CCeEEEEECCCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEE--CC
Confidence 3489999999 8887 433 689999999999 6 799999999999999999987 678885 56
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhh
Q 012606 152 SAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEI 229 (460)
Q Consensus 152 GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~ 229 (460)
||||+|+|++|+++|++|+||||+..+. .+..+++.||| |+.++++ .|+++.+. |++
T Consensus 184 GNhG~AlA~aAa~~Gl~~~IvmP~~~s~---~k~~~~r~~GAeVv~v~~~~~~~~a~~~----a~e-------------- 242 (430)
T 4aec_A 184 GNTGIGLAFIAASRGYRLILTMPASMSM---ERRVLLKAFGAELVLTDPAKGMTGAVQK----AEE-------------- 242 (430)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH--------------
T ss_pred CHHHHHHHHHHHHhCCEEEEEEcCCCCH---HHHHHHHHCCCEEEEECCCCChHHHHHH----HHH--------------
Confidence 9999999999999999999999998754 35567899998 9999753 23322111 111
Q ss_pred hHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHH
Q 012606 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAV 308 (460)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~ 308 (460)
+.++.++.|+++ ++.||.. ..||.+++.||++|+ + ..||+||+|+|||||++
T Consensus 243 -----------------------l~~~~~~~~~i~-~~~np~~~~aG~~T~a~EI~eQl--~-~~~D~vVvpvG~GGtla 295 (430)
T 4aec_A 243 -----------------------ILKNTPDAYMLQ-QFDNPANPKIHYETTGPEIWDDT--K-GKVDIFVAGIGTGGTIT 295 (430)
T ss_dssp -----------------------HHHHSTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--T-SCEEEEEEECSSSHHHH
T ss_pred -----------------------HHHhcCCcEEec-CCCCccHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCCccHHHH
Confidence 122233555554 4567876 579999999999996 2 36999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 309 GLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 309 Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
|++.++++.++.++|||||+++++.... .. ......+.++.+.. ++.+..++.++.|.|+|+|++++
T Consensus 296 Gi~~~lk~~~p~~kVigVep~~s~~l~~-g~--~~~~~i~Gl~~~~~----------p~~l~~~~vd~~v~Vsd~ea~~a 362 (430)
T 4aec_A 296 GVGRFIKEKNPKTQVIGVEPTESDILSG-GK--PGPHKIQGIGAGFI----------PKNLDQKIMDEVIAISSEEAIET 362 (430)
T ss_dssp HHHHHHHHHCTTSEEEEEEEGGGCGGGT-CC--CCCCSCTTSCCSSC----------CTTCCTTTCSEEEEECHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCcHhhC-CC--ccceeehhccCCCC----------cHHHHHHhCCeEEEECHHHHHHH
Confidence 9999999999999999999998754221 10 00000111222111 12345567888999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
+++|++++||++||+ +|++++|++++++....++++||+|+|++
T Consensus 363 ~r~La~~eGi~veps-sGaa~aAal~la~~~~~~g~~VV~Il~d~ 406 (430)
T 4aec_A 363 AKQLALKEGLMVGIS-SGAAAAAAIKVAKRPENAGKLIAVVFPSF 406 (430)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHTTSGGGTTCEEEEEECBB
T ss_pred HHHHHHHCCCEEehH-HHHHHHHHHHHHHhcCCCcCeEEEEECCC
Confidence 999999999999997 89999999988754323689999999763
No 32
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=100.00 E-value=6.8e-44 Score=359.20 Aligned_cols=279 Identities=14% Similarity=0.033 Sum_probs=212.6
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC-----CeEEEeCCccc
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQS 152 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~-----~~VVt~Gas~G 152 (460)
.++|||+++ ++|+ +.+ +.+||+|+|++| | +||||+|++.+++.++++.|. ++||++ |+|
T Consensus 13 ~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~a--ssG 76 (322)
T 1z7w_A 13 IGNTPLVYL--NNVA-EGC---------VGRVAAKLEMME-P-CSSVKDRIGFSMISDAEKKGLIKPGESVLIEP--TSG 76 (322)
T ss_dssp SSCCCEEEC--CGGG-TTC---------SSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEE--CSS
T ss_pred cCCCCeEEC--cccc-ccC---------CceEEEEecccC-C-CCchHHHHHHHHHHHHHHcCCCCCCCCEEEEe--CCC
Confidence 389999999 8887 332 679999999999 7 899999999999999999997 688874 689
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012606 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (460)
Q Consensus 153 Nhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~ 230 (460)
|||+|+|++|+++|++|+||||+..+. .+..+++.||+ |+.+++. .|+++.+. +++
T Consensus 77 N~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~--------------- 134 (322)
T 1z7w_A 77 NTGVGLAFTAAAKGYKLIITMPASMST---ERRIILLAFGVELVLTDPAKGMKGAIAK----AEE--------------- 134 (322)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH---------------
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHH----HHH---------------
Confidence 999999999999999999999998753 45668899998 9998863 23332211 111
Q ss_pred HHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHH-HHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHH
Q 012606 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (460)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~-~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~G 309 (460)
+.++.++.|+++ +..||... .||.+++.||++|+ + ..||+||+|+|||||++|
T Consensus 135 ----------------------~~~~~~~~~~i~-~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~G 188 (322)
T 1z7w_A 135 ----------------------ILAKTPNGYMLQ-QFENPANPKIHYETTGPEIWKGT--G-GKIDGFVSGIGTGGTITG 188 (322)
T ss_dssp ----------------------HHHHCTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHH
T ss_pred ----------------------HHHhCCCeEeCC-CCCChhHHHHHHHHHHHHHHHHh--c-CCCCEEEEecCccHhHHH
Confidence 122233455553 34566543 48999999999996 3 369999999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHH
Q 012606 310 LGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (460)
Q Consensus 310 l~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (460)
++.+|++..|.++|+|||+++++.... .... ....+.++.+. .++.+.+++.++.+.|+|+|+++++
T Consensus 189 i~~~~k~~~p~~~vigve~~~~~~~~~-~~~~--~~~~~gl~~~~----------~~~~~~~~~~~~~~~V~d~e~~~a~ 255 (322)
T 1z7w_A 189 AGKYLKEQNANVKLYGVEPVESAILSG-GKPG--PHKIQGIGAGF----------IPSVLNVDLIDEVVQVSSDESIDMA 255 (322)
T ss_dssp HHHHHHHHCTTCEEEEEEEGGGCGGGT-CCCC--CCSCTTSCCSS----------CCTTCCGGGCSEEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEEecCCCccccC-CCCC--CcccCcCcCCC----------CChhhhHHhCCEEEEECHHHHHHHH
Confidence 999999999999999999998754221 0000 00001122111 1223456677889999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012606 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (460)
Q Consensus 390 r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~ 434 (460)
++|++++||++||+ +|+++++++++.+....++++||+|||||.
T Consensus 256 ~~l~~~~gi~~~ps-sga~~aaa~~~~~~~~~~~~~vv~i~tg~g 299 (322)
T 1z7w_A 256 RQLALKEGLLVGIS-SGAAAAAAIKLAQRPENAGKLFVAIFPSFG 299 (322)
T ss_dssp HHHHHHHSCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBG
T ss_pred HHHHHHcCceEchh-HHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence 99999999999997 789999998876532235789999999974
No 33
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=100.00 E-value=2.1e-44 Score=381.73 Aligned_cols=290 Identities=16% Similarity=0.126 Sum_probs=222.9
Q ss_pred CCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHh-cCCCeEEEeCCccchHHHH
Q 012606 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATA 157 (460)
Q Consensus 79 g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~-~g~~~VVt~Gas~GNhg~A 157 (460)
++|||+++ ++|+ +.+ |++||+|+|++| | +||||+|++.+++.++.+ .+.++||++ |+||||+|
T Consensus 30 ~~TPL~~l--~~Ls-~~~---------g~~V~lK~E~lq-P-tgSfKdRgA~n~i~~l~~~~~~~gVV~a--SsGNhg~a 93 (514)
T 1tdj_A 30 QVTPLQKM--EKLS-SRL---------DNVILVKREDRQ-P-VHSFKLRGAYAMMAGLTEEQKAHGVITA--SAGNHAQG 93 (514)
T ss_dssp CCCCEEEC--HHHH-HHT---------TSEEEEECGGGS-T-TSSSTHHHHHHHHHTTTTSSCSSSCEEE--ECSSSHHH
T ss_pred CCCCcEEc--hhhH-Hhh---------CCeEEEEECCCC-C-cccHHHHHHHHHHHHHHHhcCCCEEEEE--CCcHHHHH
Confidence 69999999 8887 433 689999999998 7 899999999999988753 455788885 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHh
Q 012606 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (460)
Q Consensus 158 lA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~ 236 (460)
+|++|+++|++|+||||..+|. .+..+++.||| |+.++. .|++..+. |+++
T Consensus 94 vA~aa~~lGi~~~IvmP~~~p~---~Kv~~~r~~GAeVvlv~~-~~dda~~~----a~el-------------------- 145 (514)
T 1tdj_A 94 VAFSSARLGVKALIVMPTATAD---IKVDAVRGFGGEVLLHGA-NFDEAKAK----AIEL-------------------- 145 (514)
T ss_dssp HHHHHHHTTCCEEEECCSSCCH---HHHHHHHHHSCEEECCCS-SHHHHHHH----HHHH--------------------
T ss_pred HHHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 9999999999999999998764 35567899998 999876 46643322 2221
Q ss_pred hhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHh
Q 012606 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (460)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~ 316 (460)
.+..+..|+.|. .||..+.|+.|++.||++|+ . .+|+||||+||||+++|++.++++
T Consensus 146 -----------------a~e~g~~~v~pf--dnp~~iaGqgTig~EI~eQl--~--~~D~vvvpvGgGGliaGia~~lk~ 202 (514)
T 1tdj_A 146 -----------------SQQQGFTWVPPF--DHPMVIAGQGTLALELLQQD--A--HLDRVFVPVGGGGLAAGVAVLIKQ 202 (514)
T ss_dssp -----------------HHHHCCEECCSS--CCHHHHHHHHHHHHHHHHHC--T--TCCEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEeeCCC--CCHHHHHHHHHHHHHHHHHC--C--CCCEEEEccCcHHHHHHHHHHHHH
Confidence 111223344343 47888889999999999996 2 499999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhhHHHHHHhH-H--HHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHHHHH
Q 012606 317 LGLPWEVTAIALVDTIDGYKQQEKNL-I--SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (460)
Q Consensus 317 ~g~~~~vigVe~~g~~~~~~~~~~~l-~--~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r~La 393 (460)
++|.++|||||+++++....+...+. . ... .++.++ ..+..+++.++.+++++.++.+.|+|+|+.+++++|+
T Consensus 203 ~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v-~tiadG---iav~~~g~~~~~l~~~~vd~~v~Vsd~ei~~ai~~L~ 278 (514)
T 1tdj_A 203 LMPQIKVIAVEAEDSACLKAALDAGHPVDLPRV-GLFAEG---VAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLF 278 (514)
T ss_dssp HCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCC-CSSSST---TCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHH
T ss_pred hCCCCEEEEEeccCChhHHHHHhcCCeeecCCc-cccccc---hhcCCCChHHHHHHHHhCCeEEEECHHHHHHHHHHHH
Confidence 99999999999998765433211110 0 000 011111 1222334557788899999999999999999999999
Q ss_pred HHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhH
Q 012606 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (460)
Q Consensus 394 ~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~~ 440 (460)
+++|+++||+ +|+++||+++++++...++++||+|+||||.+...+
T Consensus 279 ~~~givvEPs-gA~alAal~~~~~~~~~~g~~VV~I~tGgn~d~~~l 324 (514)
T 1tdj_A 279 EDVRAVAEPS-GALALAGMKKYIALHNIRGERLAHILSGANVNFHGL 324 (514)
T ss_dssp HHTCCCCCHH-HHHHHHHHHHHHHHHTCCSCEEEEECCCCCCCTTHH
T ss_pred HHcCeEEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEEeCCCCCHHHH
Confidence 9999999997 899999999876543226899999999999987644
No 34
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=100.00 E-value=4e-44 Score=369.48 Aligned_cols=309 Identities=11% Similarity=0.003 Sum_probs=225.6
Q ss_pred Eeeec--HHHHHHHHhh-hhhhhcCCCcc-hhhhhcccccccc--CCCCCcccccCCCCCcccCCcccccCCCceEEEEe
Q 012606 40 NVRMS--GEELLSRLLD-RKWALTSPDSK-IHQIKLFTTTEKH--GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (460)
Q Consensus 40 ~~~~~--~e~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~--g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKr 113 (460)
=.+|+ ||+++++|.+ +.|....+++. +..+. ++++ ++|||+++ ++|+ +. |++||+||
T Consensus 54 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~g~~~~TPL~~l--~~Ls-~~----------g~~IylK~ 116 (389)
T 1wkv_A 54 GASRIPVGDGCSHTLEELGVFDISVPGEMVFPSPL----DFFERGKPTPLVRS--RLQL-PN----------GVRVWLKL 116 (389)
T ss_dssp TCSEEEBSSSCEEETTTTTTTCCCSCTTCEESSHH----HHHHHSCSCCEEEC--CCCC-ST----------TEEEEEEE
T ss_pred CceeecCcHHHHHHHHHHHhHHHhcCChHHHHHHH----HHhCCCCCCCeEEc--cccc-cC----------CCeEEEEE
Confidence 36788 5999999988 66876666653 33332 3455 68999999 8887 32 67999999
Q ss_pred CCCCCCCCchhHHHhHHhhHHH---HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHh
Q 012606 114 DDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTI 190 (460)
Q Consensus 114 Edln~p~~GsnK~Rkl~~~l~~---a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~ 190 (460)
||+| |++||||+|++.+++.. ++++| ++||+ +|+||||+|+|++|+++|++|+||||+..+. .+..+|+.
T Consensus 117 E~ln-p~tGS~K~R~a~~~i~~l~~a~~~g-~~Iv~--assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~---~k~~~~~~ 189 (389)
T 1wkv_A 117 EWYN-PFSLSVKDRPAVEIISRLSRRVEKG-SLVAD--ATSSNFGVALSAVARLYGYRARVYLPGAAEE---FGKLLPRL 189 (389)
T ss_dssp GGGS-TTTSBTTHHHHHHHHHHHTTTSCTT-CEEEE--ECCHHHHHHHHHHHHHTTCEEEEEEETTSCH---HHHHHHHH
T ss_pred cCCC-CCcCChHHHHHHHHHHHHHHHHhcC-CEEEE--ECCcHHHHHHHHHHHHcCCeEEEEECCCCCH---HHHHHHHH
Confidence 9998 54689999999999998 66777 77775 4789999999999999999999999998653 35568899
Q ss_pred CCc-EE-EeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCc
Q 012606 191 YGK-VT-YVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG 268 (460)
Q Consensus 191 ~Ga-V~-~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~ 268 (460)
||| |+ .++.+++++..... .+ | .+..+..|+. +..
T Consensus 190 ~GAeVv~~v~~~~~~da~~~a----~~---------~----------------------------~~~~g~~~~~--p~~ 226 (389)
T 1wkv_A 190 LGAQVIVDPEAPSTVHLLPRV----MK---------D----------------------------SKNEGFVHVN--QFY 226 (389)
T ss_dssp TTCEEEEETTCSSSGGGHHHH----HH---------H----------------------------HHHHCCEECC--TTT
T ss_pred cCCEEEEEcCCCCHHHHHHHH----HH---------H----------------------------HHccCcEecC--cCC
Confidence 998 88 78744565432211 11 1 1111233433 334
Q ss_pred chHH-HHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHHHHH
Q 012606 269 DAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFK 347 (460)
Q Consensus 269 np~~-~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~ 347 (460)
||.. ..|+.+++.||++|+...+..||+||+|+|||||++|++.+|++.++.++|||||+.++... . ++
T Consensus 227 N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l--~---Gi----- 296 (389)
T 1wkv_A 227 NDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSI--P---GI----- 296 (389)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCC--T---TC-----
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCcc--c---cc-----
Confidence 5543 44677899999999852234799999999999999999999998889999999999875321 0 00
Q ss_pred HHhccccccCCcccccchhhHHhhhcCC-CeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCe
Q 012606 348 RLFGFLLKKSSLNEVDGEIVHWVERCRP-RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDAD 425 (460)
Q Consensus 348 ~~i~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~~~g~~ 425 (460)
..++.. .. + +.....+ +.+.|+|+|+++++++|++++||++||+ ||++++++++++++. +.+ ++
T Consensus 297 -----~~i~~~-----~~-~-~~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~ps-sa~alaa~~~l~~~g~~~~-~~ 362 (389)
T 1wkv_A 297 -----RRVETG-----ML-W-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPS-GGAAVKALAKKAAEGDLEP-GD 362 (389)
T ss_dssp -----CCGGGC-----CS-H-HHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHH-HHHHHHHHHHHHHTTCSCS-EE
T ss_pred -----cccCCc-----ch-h-hhhheeccEEEEECHHHHHHHHHHHHHHcCCeEChH-HHHHHHHHHHHHHhcCCCC-CC
Confidence 000000 11 1 1223344 6899999999999999999999999997 899999999887643 443 45
Q ss_pred EEEEecC-CCcchhh
Q 012606 426 VVMLHTG-GTLGMFG 439 (460)
Q Consensus 426 Vv~i~TG-G~~~~~~ 439 (460)
+|+++|| |..++..
T Consensus 363 vVviltg~G~k~~~~ 377 (389)
T 1wkv_A 363 YVVVVPDTGFKYLSL 377 (389)
T ss_dssp EEEEECBBGGGCHHH
T ss_pred EEEEEcCCCccCHHH
Confidence 7788998 6666554
No 35
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=100.00 E-value=3e-43 Score=351.79 Aligned_cols=274 Identities=15% Similarity=0.071 Sum_probs=210.2
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC--CeEEEeCCccchH
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAH 154 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~--~~VVt~Gas~GNh 154 (460)
..++|||+++ ++++ .+||+|+|++| | +||||+|++.+++.+|+++|. ++||+ +|+|||
T Consensus 17 ~~~~TPL~~l--~~l~--------------~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~~vv~--aSsGN~ 76 (303)
T 1o58_A 17 LIGSTPIVRL--DSID--------------SRIFLKLEKNN-P-GGSVKDRPALFMILDAEKRGLLKNGIVE--PTSGNM 76 (303)
T ss_dssp HSCCCCEEEC--TTTC--------------TTEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCTTCEEE--ECSSHH
T ss_pred ccCCCCeEEC--ccCC--------------ceEEEEecCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCEEE--ECchHH
Confidence 3489999999 6654 47999999998 7 899999999999999988887 67886 478999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhHH
Q 012606 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (460)
Q Consensus 155 g~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~ 232 (460)
|+|+|++|+++|++|+||||+..+. .+..+++.||+ |+.+++. .|++..+. ++++
T Consensus 77 g~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~~---------------- 133 (303)
T 1o58_A 77 GIAIAMIGAKRGHRVILTMPETMSV---ERRKVLKMLGAELVLTPGELGMKGAVEK----ALEI---------------- 133 (303)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHHH----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHHH----------------
Confidence 9999999999999999999988653 45667899998 9999863 24432221 1111
Q ss_pred HHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHH-HHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHH
Q 012606 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (460)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~-G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~ 311 (460)
.+.. +.|+ +.++.||.... ||.+++.||++|+ ++ .||+||+|+|+|||++|++
T Consensus 134 ---------------------~~~~-~~~~-~~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~ 187 (303)
T 1o58_A 134 ---------------------SRET-GAHM-LNQFENPYNVYSHQFTTGPEILKQM--DY-QIDAFVAGVGTGGTISGVG 187 (303)
T ss_dssp ---------------------HHHH-CCBC-CCTTTCHHHHHHHHHTHHHHHHHHT--TT-CCSEEEEECSSSHHHHHHH
T ss_pred ---------------------HHhc-CeEe-CCCCCCHHHHHHHHHHHHHHHHHHc--CC-CCCEEEEeeCCcccHHHHH
Confidence 1112 2333 45667888654 7899999999997 32 5999999999999999999
Q ss_pred HHHHhcCCC-CeEEEEeccCChhhHHHHHHhHHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHHHH
Q 012606 312 LGAICLGLP-WEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (460)
Q Consensus 312 ~~~~~~g~~-~~vigVe~~g~~~~~~~~~~~l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~r 390 (460)
.++++.++. ++|||||+++++...... .. ....+.++.+. .++.+.....++.+.|+|+|++++++
T Consensus 188 ~~~k~~~p~~~~vigve~~~~~~~~~g~-~~--~~~~~gi~~~~----------~~~~~~~~~~d~~~~V~d~e~~~a~~ 254 (303)
T 1o58_A 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQ-PG--KHAIQGIGAGF----------VPKILDRSVIDEVITVEDEEAYEMAR 254 (303)
T ss_dssp HHHHHHHGGGSEEEEEEETTSCTTTTCC-CC--CCCCTTSCCSS----------CCTTCCGGGCCEEEEECHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEEEecCCCccccCCC-CC--CeecCcCCCCC----------cCHHHHHHhCCeEEEECHHHHHHHHH
Confidence 999988888 999999999875422100 00 00001111111 11234456678899999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012606 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (460)
Q Consensus 391 ~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~ 434 (460)
+|++++||++||+ +|+++++++++.++ +.++++||+|+|||.
T Consensus 255 ~l~~~~gi~~eps-sa~alaa~~~~~~~-~~~~~~vv~i~tg~g 296 (303)
T 1o58_A 255 YLAKKEGLLVGIS-SGANVAAALKVAQK-LGPDARVVTVAPDHA 296 (303)
T ss_dssp HHHHHHCCCBCHH-HHHHHHHHHHHHHT-SCTTCCEEEEECBBG
T ss_pred HHHHHcCceEcHH-HHHHHHHHHHHHHH-cCCCCEEEEEECCCC
Confidence 9999999999997 89999999988654 456899999999974
No 36
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=100.00 E-value=2e-42 Score=361.28 Aligned_cols=286 Identities=12% Similarity=0.066 Sum_probs=207.9
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccch
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GN 153 (460)
-++|||+++ ++|+ +.+|. +++||+|+|++| | +||||+|++.+++.+|++.|. ++||++ |+||
T Consensus 106 ig~TPLv~l--~~Ls-~~~G~-------~~~v~lK~E~~n-p-tGSfKdR~a~~~i~~a~~~G~l~~g~tVV~a--SsGN 171 (435)
T 1jbq_A 106 IGDTPMVRI--NKIG-KKFGL-------KCELLAKCEFFN-A-GGSVKDRISLRMIEDAERDGTLKPGDTIIEP--TSGN 171 (435)
T ss_dssp SSCCCEEEC--CSHH-HHTTC-------CSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTCSCTTCEEEEE--CSSH
T ss_pred CCCCCeEEC--cchh-hHhCC-------CceEEEEECCCC-C-cCCHHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCH
Confidence 479999999 8887 44431 369999999999 7 899999999999999998885 678874 6799
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 154 hg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
||+|+|++|+++|++|+||||+..+. .++.+++.||| |+.++.. .|++.+...+ .|
T Consensus 172 ~G~AlA~aaa~~Gi~~~IvmP~~~s~---~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~-~a------------------ 229 (435)
T 1jbq_A 172 TGIGLALAAAVRGYRCIIVMPEKMSS---EKVDVLRALGAEIVRTPTNARFDSPESHVG-VA------------------ 229 (435)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSCCCH---HHHHHHHHTTCEEEECCC-------CCHHH-HH------------------
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHhCCCEEEEecCCCCcchHHHHHH-HH------------------
Confidence 99999999999999999999998754 35667899998 9998753 3443211111 11
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchH-HHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
.++.+..++.|+++ +..||. ...||.+++.||++|+ + ..+|+||+|+|||||++|+
T Consensus 230 -------------------~~la~~~~~~~~i~-q~~n~~n~~ag~~t~a~EI~eQl--~-~~~D~vVvpvGtGGtlaGi 286 (435)
T 1jbq_A 230 -------------------WRLKNEIPNSHILD-QYRNASNPLAHYDTTADEILQQC--D-GKLDMLVASVGTGGTITGI 286 (435)
T ss_dssp -------------------HHHHHHSTTEECCC-TTTCTHHHHHHHHTHHHHHHHHH--T-TCCCEEEEECSSSHHHHHH
T ss_pred -------------------HHHHHhcCCeEEeC-ccCCcccHHHHHHHHHHHHHHHc--C-CCCCEEEEecCCcHhHHHH
Confidence 12222334566654 223332 2347899999999997 3 3689999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHh--HHHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKN--LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~--l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
+++|++..|.++|||||+++++......... ......+.++.+. + ...+.....++.+.|+|+|++++
T Consensus 287 ~~~lk~~~p~vrVigVep~gs~~~~~~~l~~~~~~~~~~~gig~~~-------~---~~~l~~~~vd~~~~Vsd~ea~~a 356 (435)
T 1jbq_A 287 ARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDF-------I---PTVLDRTVVDKWFKSNDEEAFTF 356 (435)
T ss_dssp HHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSS-------C---CTTCCGGGCCEEEEECHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEecCCchhhchhhhhcCCCcceeecccccCc-------c---chhhhhhhccceEEeCHHHHHHH
Confidence 9999998999999999999875311110000 0000000011110 0 01123456777899999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~ 434 (460)
+++|++++||++|| |+|++++++++++++ +.++++||+|+||+.
T Consensus 357 ~r~La~~eGilve~-ssgaalaaa~~~~~~-~~~g~~VV~iltd~g 400 (435)
T 1jbq_A 357 ARMLIAQEGLLCGG-SAGSTVAVAVKAAQE-LQEGQRCVVILPDSV 400 (435)
T ss_dssp HHHHHHHSCCCBCH-HHHHHHHHHHHHGGG-CCTTCEEEEEECBBG
T ss_pred HHHHHHHcCCEEcH-HHHHHHHHHHHHHHH-cCCCCeEEEEEcCCc
Confidence 99999999999998 589999999988754 556899999999864
No 37
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=100.00 E-value=3.4e-42 Score=368.61 Aligned_cols=285 Identities=14% Similarity=0.086 Sum_probs=213.8
Q ss_pred cCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC----CeEEEeCCccch
Q 012606 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~----~~VVt~Gas~GN 153 (460)
-|+|||+++ ++|+ +.+|. +++||+|+|++| | +||||+|++.+++.+|++.|. ++||++ |+||
T Consensus 58 ig~TPl~~l--~~l~-~~~g~-------~~~i~~K~E~~~-p-tGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~--ssGN 123 (527)
T 3pc3_A 58 IGCTPLVKL--NNIP-ASDGI-------ECEMYAKCEFLN-P-GGSVKDRIGYRMVQDAEEQGLLKPGYTIIEP--TSGN 123 (527)
T ss_dssp SSCCCEEEC--CSHH-HHTTC-------CSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHHTCCCTTCEEEEE--CSSH
T ss_pred cCCCCcEEc--chhh-hhcCC-------CcEEEEEeccCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCH
Confidence 378999999 8887 54432 479999999999 6 899999999999999999997 788873 7899
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCC-chhhHHHHHHHHhhhhhcCCCCccchhhhhH
Q 012606 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (460)
Q Consensus 154 hg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~ 231 (460)
||+|+|++|+++|++|+||||+..+. .+..+++.||| |+.++.. .|++...+.+ .|++
T Consensus 124 ~g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~-~a~~---------------- 183 (527)
T 3pc3_A 124 TGIGLAMACAVKGYKCIIVMPEKMSN---EKVSALRTLGAKIIRTPTEAAYDSPEGLIY-VAQQ---------------- 183 (527)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTSCTTSTTSHHH-HHHH----------------
T ss_pred HHHHHHHHHHHhCCeEEEEEcCCCCH---HHHHHHHHCCCEEEEeCCCCCcccHHHHHH-HHHH----------------
Confidence 99999999999999999999998754 35667899998 9999863 3543221111 1111
Q ss_pred HHHHhhhhhhcccccccccccccccCCcEEEecCCCcchH-HHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHH
Q 012606 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl 310 (460)
+.+..+..|++ .++.||. ...||.+++.||++|+. ..||+||+|+|||||++|+
T Consensus 184 ---------------------~~~~~~~~~~~-~~~~n~~n~~~g~~t~~~Ei~~q~~---~~~d~vv~~vG~GG~~~G~ 238 (527)
T 3pc3_A 184 ---------------------LQRETPNSIVL-DQYRNAGNPLAHYDGTAAEILWQLD---NKVDMIVVSAGTAGTISGI 238 (527)
T ss_dssp ---------------------HHHHSSSEECC-CTTTCTHHHHHHHHTHHHHHHHHTT---TCCSEEEEECSSSHHHHHH
T ss_pred ---------------------HHHhCCCcEec-CCCCCcchHHHHHHHHHHHHHHhcC---CCCCEEEEecCccHHHHHH
Confidence 22223344433 4445664 45689999999999972 2699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhhHHHHHHhH--HHHHHHHhccccccCCcccccchhhHHhhhcCCCeEEeCcHHHHHH
Q 012606 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNL--ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (460)
Q Consensus 311 ~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l--~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (460)
+.++++..|.++|||||+++++.......... .....+.++.+++ ...+.+.+.++.+.|+|+|++++
T Consensus 239 ~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~----------p~~~~~~~~d~~~~V~d~e~~~a 308 (527)
T 3pc3_A 239 GRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFP----------PTVFDDTVVDVWTKIGDSDCFPM 308 (527)
T ss_dssp HHHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCCSSC----------CTTCCGGGCCEEEEECGGGTHHH
T ss_pred HHHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCCCCC----------CcccchhhCcEEEEECHHHHHHH
Confidence 99999989999999999999753211100000 0000011121111 11234567888999999999999
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCC
Q 012606 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (460)
Q Consensus 389 ~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG 433 (460)
+++|++++||++||+ +|+++||++++++. +.++++||+|+|++
T Consensus 309 ~r~l~~~eGi~~~ps-sa~alaaal~~~~~-~~~~~~vv~i~~d~ 351 (527)
T 3pc3_A 309 SRRLNAEEGLLCGGS-SGGAMHAALEHARK-LKKGQRCVVILPDG 351 (527)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHHTT-CCTTCEEEEEECBB
T ss_pred HHHHHHHcCceEcHH-HHHHHHHHHHHHHH-cCCCCeEEEEEcCc
Confidence 999999999999997 89999999988753 56789999999874
No 38
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=100.00 E-value=1.4e-40 Score=352.29 Aligned_cols=296 Identities=15% Similarity=0.111 Sum_probs=215.6
Q ss_pred cCCCCCcccccCCCCCcc-cCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhHHHHHh---c--CCCeEEEeCCcc
Q 012606 78 HGGGPLGGISFLNNTCPF-LGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED---H--IVTDLVTCGGCQ 151 (460)
Q Consensus 78 ~g~TPL~~~~~~~l~~~~-~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~---~--g~~~VVt~Gas~ 151 (460)
.|+|||+++ ++|+ +. +| ..+||+|+|++| | +||||||++.+++..+++ . |.++||+ +|+
T Consensus 128 ~g~TPLv~l--~~L~-~~~lg--------~~~l~~K~E~~n-P-TGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~--aSs 192 (486)
T 1e5x_A 128 EGNSNLFWA--ERFG-KQFLG--------MNDLWVKHCGIS-H-TGSFKDLGMTVLVSQVNRLRKMKRPVVGVGC--AST 192 (486)
T ss_dssp CCCCCEEEC--HHHH-HHHHC--------CSSEEEEETTSS-T-TSBTTHHHHHHHHHHHHHHHHTTCCCCEEEE--CCC
T ss_pred CCCCCcEEC--cccc-hhhcC--------CCcEEEeeccCC-C-ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEE--cCC
Confidence 578999999 8776 43 32 258999999999 7 899999999888776654 2 5678886 478
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhh
Q 012606 152 SAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 229 (460)
Q Consensus 152 GNhg~AlA~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~ 229 (460)
||||+|+|++|+++|++|+||||.. .+. .+..+++.||+ |+.|++. |+++.+..+ +
T Consensus 193 GNtG~AlA~~a~~~Gi~~~I~~P~~~~s~---~k~~~~~~~GA~vi~v~g~-~dd~~~~a~----~-------------- 250 (486)
T 1e5x_A 193 GDTSAALSAYCASAGIPSIVFLPANKISM---AQLVQPIANGAFVLSIDTD-FDGCMKLIR----E-------------- 250 (486)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEEGGGCCH---HHHHHHHHTTCEEEEEESC-HHHHHHHHH----H--------------
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCCH---HHHHHHHhCCCEEEEECCC-HHHHHHHHH----H--------------
Confidence 9999999999999999999999985 654 34567899998 9999874 765433321 1
Q ss_pred hHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHH
Q 012606 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (460)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~G 309 (460)
+.+.. +.|++|. .||...+|+.+++.||++|+ ++..||+||+|+|+||+++|
T Consensus 251 -----------------------l~~~~-~~~~vns--~N~~~i~gq~t~~~Ei~~ql--~~~~~D~vvvpvG~GG~i~G 302 (486)
T 1e5x_A 251 -----------------------ITAEL-PIYLANS--LNSLRLEGQKTAAIEILQQF--DWQVPDWVIVPGGNLGNIYA 302 (486)
T ss_dssp -----------------------HHHHS-CEEEGGG--SHHHHHHHHTHHHHHHHHHT--TSCCCSEEEEECSSTHHHHH
T ss_pred -----------------------HHhcC-CEEEeCC--CCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCcHHHHHH
Confidence 11112 3566654 38999999999999999997 33468999999999999999
Q ss_pred HHHHHHhc---C---CCCeEEEEeccCChhhHHHHHHh--------HHHHHHHHhccccccCCcccccchhhHHhhhcCC
Q 012606 310 LGLGAICL---G---LPWEVTAIALVDTIDGYKQQEKN--------LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRP 375 (460)
Q Consensus 310 l~~~~~~~---g---~~~~vigVe~~g~~~~~~~~~~~--------l~~~~~~~i~~~~~p~~~~~~~~~~~~l~~~~~~ 375 (460)
++.+|+++ | +.++|||||++++.........+ ....+++.++.+ .|..+ +....+++++.+
T Consensus 303 i~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~gi~i~-~p~~~----~~~~~~~~~~~g 377 (486)
T 1e5x_A 303 FYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG-DPVSI----DRAVYALKKCNG 377 (486)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CCC----HHHHHHHHHTTC
T ss_pred HHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCccccCC-CCccH----HHHHHHHhccCC
Confidence 99999864 4 67899999999765433211111 012233333221 12111 122224555555
Q ss_pred CeEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhHHHHHH
Q 012606 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQRYK 445 (460)
Q Consensus 376 ~~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~-~~~g~~Vv~i~TGG~~~~~~~~~ry~ 445 (460)
..+.|+|+|++++++ +++++|+++||+ ||+++++++++.++. +.++++||+|+|||+....+..+.|.
T Consensus 378 ~~~~Vsd~e~~~ai~-l~~~eGi~~ePs-sA~alaa~~~~~~~g~~~~~~~vV~i~Tg~~~k~~~~v~~~~ 446 (486)
T 1e5x_A 378 IVEEATEEELMDAMA-QADSTGMFICPH-TGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYH 446 (486)
T ss_dssp EEEEECHHHHHHHHH-HHHHTTCCCCHH-HHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHHHHHH
T ss_pred eEEEECHHHHHHHHH-HHHHCCeEEChh-HHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCccCHHHHHHHh
Confidence 589999999999999 778999999997 899999999887643 55688999999999877666555543
No 39
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=100.00 E-value=2.4e-35 Score=307.89 Aligned_cols=287 Identities=10% Similarity=-0.046 Sum_probs=194.2
Q ss_pred ccCCCCCcccccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhh---HHHHHhcCCCeEEEeCCccch
Q 012606 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL---LPLLEDHIVTDLVTCGGCQSA 153 (460)
Q Consensus 77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~---l~~a~~~g~~~VVt~Gas~GN 153 (460)
.+++|||+++ + .+||+ +|++++| +||||||++.++ +..+++.+..+||+ +|+||
T Consensus 80 ~~~~TPL~~l--~-----------------~~i~~-~E~~~~p-TgSfKdr~a~~l~~~l~~a~~~~~~~Iv~--atsGN 136 (428)
T 1vb3_A 80 FAFPAPVANV--E-----------------SDVGC-LELFHGP-TLAFKDFGGRFMAQMLTHIAGDKPVTILT--ATSGD 136 (428)
T ss_dssp CCSCCCEEEE--E-----------------TTEEE-EECCCST-TSBTHHHHHHHHHHHHHHHTTTCCEEEEE--ECSSS
T ss_pred hCCCCCeEEe--c-----------------CCeEE-eeccCCC-cccHHHHHHHHHHHHHHHHHhcCCCEEEe--cCCch
Confidence 4689999998 2 26999 8999557 899999999887 45554444456666 47899
Q ss_pred HHHHHH-HHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-E--EEeCCCchhhHHHHHHHHhhhhhcCCCCccchhh
Q 012606 154 HATAVA-VSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNE 228 (460)
Q Consensus 154 hg~AlA-~aaa~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~Ga-V--~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~ 228 (460)
||+|+| ++|+++|++|+||||.. .+.. +..+|+.+|| | +.+++ .+++..+..+ ++.. .|.
T Consensus 137 tG~A~A~~~a~~~G~~~~I~~P~~~~s~~---k~~~m~~~GA~V~~v~v~g-~~d~~~~~~~----~~~~-----d~~-- 201 (428)
T 1vb3_A 137 TGAAVAHAFYGLPNVKVVILYPRGKISPL---QEKLFCTLGGNIETVAIDG-DFDACQALVK----QAFD-----DEE-- 201 (428)
T ss_dssp HHHHHHHHTTTCTTEEEEEEEETTCSCHH---HHHHHHSCCTTEEEEEEES-CHHHHHHHHH----HGGG-----CHH--
T ss_pred HHHHHHHHHhhhcCCeEEEEECCCCCCHH---HHHHHHhcCCeEEEEEeCC-CHHHHHHHHH----HHHh-----chh--
Confidence 999999 69999999999999984 6543 4457899998 8 77776 4665443332 2111 110
Q ss_pred hhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHH
Q 012606 229 IFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAV 308 (460)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~ 308 (460)
+.... ..+ ..+..||....|+.+++.||++|+...+..||+||+|+|+||+++
T Consensus 202 ------------------------~~~~~-~~~--~~n~~n~~~~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~ 254 (428)
T 1vb3_A 202 ------------------------LKVAL-GLN--SANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLT 254 (428)
T ss_dssp ------------------------HHHHH-TEE--CCSTTSHHHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHH
T ss_pred ------------------------hhhhc-Cee--eCCCCCHHHHHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHH
Confidence 00011 222 233468888899999999999997311126999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeccCChhhHHHHHHhHHH--HHHHHhccccccCCcccccchhhHHhhhc-----CCCeEEeC
Q 012606 309 GLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLIS--EFKRLFGFLLKKSSLNEVDGEIVHWVERC-----RPRKFGNV 381 (460)
Q Consensus 309 Gl~~~~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~--~~~~~i~~~~~p~~~~~~~~~~~~l~~~~-----~~~~~~v~ 381 (460)
|++.+++...|.++||||+..++. .......+... ....+++.++ ....+...+..+.++++. .+..+.|+
T Consensus 255 G~~~a~~~g~p~~kii~a~~~~~~-l~~~~~~G~~~~~~~~~tis~g~-~i~~p~~~~~~~~l~~~~~~~~~~~~~~~Vs 332 (428)
T 1vb3_A 255 AGLLAKSLGLPVKRFIAATNVNDT-VPRFLHDGQWSPKATQATLSNAM-DVSQPNNWPRVEELFRRKIWQLKELGYAAVD 332 (428)
T ss_dssp HHHHHHHTTCCCSEEEEEECSCCH-HHHHHHHSCCCCCCCCCCSSGGG-CCSSCTTHHHHHHHHHHTTCCGGGSEEEECC
T ss_pred HHHHHHHcCCCCCeEEeecCCChH-HHHHHHcCCcccCCCCCcccchh-cCCCCccHHHHHHHHhcchhhhhCcEEEEEC
Confidence 999999854455699999976632 11111000000 0001122211 000000001112234444 67789999
Q ss_pred cHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcc
Q 012606 382 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLG 436 (460)
Q Consensus 382 d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~ 436 (460)
|+|+++++++| +++|+++||+ ||+++++++++.+ ++++||+++||++.-
T Consensus 333 d~e~~~a~~~l-~~eGi~~~p~-sa~a~aa~~~~~~----~~~~vV~i~tg~~~K 381 (428)
T 1vb3_A 333 DETTQQTMREL-KELGYTSEPH-AAVAYRALRDQLN----PGEYGLFLGTAHPAK 381 (428)
T ss_dssp HHHHHHHHHHH-HHTTCCCCHH-HHHHHHHHHTTCC----TTCEEEEEECBCGGG
T ss_pred HHHHHHHHHHH-HHCCeEECch-HHHHHHHHHHHhC----CCCcEEEEeCCCCCC
Confidence 99999999999 9999999997 8999999987643 478999999997643
No 40
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=99.96 E-value=6.3e-29 Score=260.98 Aligned_cols=276 Identities=11% Similarity=0.053 Sum_probs=181.1
Q ss_pred ceEEEEeCCCCCCCCchhHHHhHHhh---HHHH-HhcCCC-eEEEeCCccchHH-HHHHHHHHHhCCeEEEEecCC-CCc
Q 012606 107 RCFYVVRDDLLHPLVNGNKARKMDAL---LPLL-EDHIVT-DLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE-QPQ 179 (460)
Q Consensus 107 ~~l~lKrEdln~p~~GsnK~Rkl~~~---l~~a-~~~g~~-~VVt~Gas~GNhg-~AlA~aaa~~Gl~~~iv~p~~-~~~ 179 (460)
.++|+|.|.+| | |||||||.+.++ +..+ ++.|.+ +||+ +|+|||| .++|++|+++|++|+||||.. .++
T Consensus 101 ~~~~~kee~~~-P-TgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~--ASSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s~ 176 (468)
T 4f4f_A 101 ANEFVLELFHG-P-TLAFKDVAMQLLARMMDYVLAQRGERATIVG--ATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSP 176 (468)
T ss_dssp TTEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHHTTCCEEEEE--ECSSHHHHHHHHHHTTCSSEEEEEEEETTCSCH
T ss_pred CCeehHHhccC-C-cccHHHHHHHHHHHHHHHHHHhcCCCcEEEE--ECCchHHHHHHHHHHhccCCcEEEEeCCCCCCH
Confidence 36999999998 7 999999999988 6666 366764 6776 4789999 556777999999999999997 665
Q ss_pred cchhhhHHHHhCC-c-E--EEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhcccccccccccccc
Q 012606 180 ILTGYNLISTIYG-K-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDN 255 (460)
Q Consensus 180 ~~~~~~~~~~~~G-a-V--~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (460)
. +..+|+.+| + | +.|++ .|+++.+..++ ++.+. .+. .
T Consensus 177 ~---k~~~~~~~gganV~vv~v~g-~fdda~~~~k~----~~~d~------------~~~-------------------~ 217 (468)
T 4f4f_A 177 V---QQRQMTSSGFSNVHALSIEG-NFDDCQNLVKG----MFNDL------------EFC-------------------D 217 (468)
T ss_dssp H---HHHHHHCSCCTTEEEEEEES-CHHHHHHHHHH----HHHCH------------HHH-------------------H
T ss_pred H---HHHHHHhcCCCeEEEeecCC-CHHHHHHHHHH----HHhcc------------ccc-------------------c
Confidence 3 344678886 4 5 56665 57765554432 21110 000 0
Q ss_pred cCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCE---EEEecCCchhHHHHHHHHHhcCC-CCeEEEEeccCC
Q 012606 256 CRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIK---FVVDAGTGTTAVGLGLGAICLGL-PWEVTAIALVDT 331 (460)
Q Consensus 256 ~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~---vvv~vGtGgt~~Gl~~~~~~~g~-~~~vigVe~~g~ 331 (460)
. ...+.++. .||..+.|+.+++.||++|+ +.||. ||||+|+||+++|++.+ +.+|. ..|||+| +.+.
T Consensus 218 ~-~~~~~vns--in~~ri~GQ~T~~~Ei~~ql----~~~d~~v~vvVPvG~GG~i~g~~~A-k~mGlPi~kli~a-~n~~ 288 (468)
T 4f4f_A 218 A-LSLSGVNS--INWARIMPQVVYYFTAALSL----GAPDRAVSFTVPTGNFGDIFAGYVA-KRMGLPIEQLIIA-TNDN 288 (468)
T ss_dssp H-HTEEECCT--TSHHHHGGGHHHHHHHHHHT----TTTSSCEEEEEECSSSHHHHHHHHH-HHHTCCEEEEEEE-ECSC
T ss_pred c-cceEeCCC--CCHHHHHhHHHHHHHHHHhc----ccCCCCeEEEEEeCCcHHHHHHHHH-HHhCCCCCEEEEE-eCCc
Confidence 0 12344443 48989999999999999997 25788 99999999999999988 44675 4599999 6555
Q ss_pred hhhHHHHHHhH--HHHHHHHhcccc-cc--CCcccc--------cchhhHHh---hhc---------------CCCeEEe
Q 012606 332 IDGYKQQEKNL--ISEFKRLFGFLL-KK--SSLNEV--------DGEIVHWV---ERC---------------RPRKFGN 380 (460)
Q Consensus 332 ~~~~~~~~~~l--~~~~~~~i~~~~-~p--~~~~~~--------~~~~~~l~---~~~---------------~~~~~~v 380 (460)
....+....+. ......++.+++ ++ ..+.++ +.....+. +.. ....+.|
T Consensus 289 ~~l~~~l~~G~~~~~~~~~Tia~smdi~~~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~V 368 (468)
T 4f4f_A 289 DILSRTLESGAYEMRGVAQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRS 368 (468)
T ss_dssp CHHHHHHHHSEEECCCCCCCSCGGGCCSSCTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEEC
T ss_pred hHHHHHHHcCCceecCCcceeCchhhcCccchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEE
Confidence 43222211110 000011222111 00 000000 00000000 000 0125789
Q ss_pred CcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhh
Q 012606 381 VFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFG 439 (460)
Q Consensus 381 ~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TGG~~~~~~ 439 (460)
+|+|+.++|+++++++|+++||. +|+++++++++. .++.++|++.||...-..+
T Consensus 369 sD~ei~~ai~~l~~~~g~~vEP~-~Ava~aa~~~~~----~~~~~~V~l~Ta~~~Kf~~ 422 (468)
T 4f4f_A 369 TVDETAATIESVLSKDGYLLDPH-SAIGVKVAREKA----SGTAPMVVLATAHPAKFPD 422 (468)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCHH-HHHHHHHHHHHC----CSSSCEEEEECBCGGGSHH
T ss_pred CHHHHHHHHHHHHHHCCEEECHh-HHHHHHHHHHHh----CCCCeEEEEecCCccccHH
Confidence 99999999999999999999997 789999998763 3477899999996544333
No 41
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=99.96 E-value=1e-28 Score=262.34 Aligned_cols=287 Identities=12% Similarity=0.056 Sum_probs=185.2
Q ss_pred cCCCCCcc--cccCCCCCcccCCcccccCCCceEEEEeCCCCCCCCchhHHHhHHhhH---HHHH-hcC---------CC
Q 012606 78 HGGGPLGG--ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALL---PLLE-DHI---------VT 142 (460)
Q Consensus 78 ~g~TPL~~--~~~~~l~~~~~g~~~~~~~~g~~l~lKrEdln~p~~GsnK~Rkl~~~l---~~a~-~~g---------~~ 142 (460)
.|+|||++ + .++ .+||+|.|.+| | |||||||.+.+++ .+++ +.| ..
T Consensus 94 ~g~TPLv~~~l--~~l---------------~~l~~K~e~~n-P-TgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~ 154 (514)
T 1kl7_A 94 DEVTPLVQNVT--GDK---------------ENLHILELFHG-P-TYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQI 154 (514)
T ss_dssp TTSSCEECCTT--CSS---------------SCEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCE
T ss_pred CCCCceeehhc--ccc---------------cchhhhhhccC-C-CCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCC
Confidence 58899998 7 332 26999999999 7 9999999998884 4442 345 35
Q ss_pred eEEEeCCccchHHHHHHHHH--HHhCCeEEEEecCC-CCccchhhhHHHHhCC--c-EEEeCCCchhhHHHHHHHHhhhh
Q 012606 143 DLVTCGGCQSAHATAVAVSC--AERGLKSHLLLRGE-QPQILTGYNLISTIYG--K-VTYVPRTHYAHRIEMLKSYANLV 216 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aa--a~~Gl~~~iv~p~~-~~~~~~~~~~~~~~~G--a-V~~v~~~~~~~~~~~~~~~A~~l 216 (460)
+||+ +|+||||.| |++| ++.|++|+||||.. .+..+ ...+++.+| + |+.|++ .|++..+.. +++
T Consensus 155 ~Iv~--ATSGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q--~~qm~~~~g~~~~vv~v~g-~fdda~~~v----k~l 224 (514)
T 1kl7_A 155 TVVG--ATSGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQ--EEQMTTVPDENVQTLSVTG-TFDNCQDIV----KAI 224 (514)
T ss_dssp EEEE--ECSSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHH--HHHHHHCCCTTEEEEEESS-CHHHHHHHH----HHH
T ss_pred EEEE--CCCCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHH--HHHHhhhcCCCEEEEEcCC-CHHHHHHHH----HHH
Confidence 6665 488999999 6666 89999999999986 65432 222233345 4 677766 477644433 222
Q ss_pred hcCCCCccchhhhhHHHHHhhhhhhcccccccccccccccCCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCC--CCC
Q 012606 217 AGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGR--KRA 294 (460)
Q Consensus 217 a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~--~~p 294 (460)
+.+.+. .... ..+.. +..||..++|+.+.+.|+.+|+. ++ ..|
T Consensus 225 ~~~~~~-------------------------------~~~~-~~~~~--Ns~N~~ri~gQ~tyy~e~~~ql~-~~~~~~~ 269 (514)
T 1kl7_A 225 FGDKEF-------------------------------NSKH-NVGAV--NSINWARILAQMTYYFYSFFQAT-NGKDSKK 269 (514)
T ss_dssp HHCSSC-------------------------------C--C-CBCCC--CSCCHHHHHHHHHHHHHHHHHHH-SSSSCCC
T ss_pred Hhcccc-------------------------------cccc-eeEee--CCCCHhHHhhHHHHHHHHHHHHh-hhcCCCC
Confidence 221110 0000 11212 22478889999999999999972 22 358
Q ss_pred CEEEEecCCchhHHHHHHHHHhcC-CCCeEEEEeccCChhhHHHHHHhH--H-HHHHHHhcccc---ccCCcccccchhh
Q 012606 295 IKFVVDAGTGTTAVGLGLGAICLG-LPWEVTAIALVDTIDGYKQQEKNL--I-SEFKRLFGFLL---KKSSLNEVDGEIV 367 (460)
Q Consensus 295 D~vvv~vGtGgt~~Gl~~~~~~~g-~~~~vigVe~~g~~~~~~~~~~~l--~-~~~~~~i~~~~---~p~~~~~~~~~~~ 367 (460)
|+||||+|+||++.|.+.+.+ .| |.+|||+|++++++- ......+. . .....+++.++ +|..+. ...+
T Consensus 270 d~~vvP~GngG~i~a~~~ak~-~G~p~~rli~v~~~n~~l-~~~~~~G~~~~~~~~~~Tis~amdi~~psn~e---r~l~ 344 (514)
T 1kl7_A 270 VKFVVPSGNFGDILAGYFAKK-MGLPIEKLAIATNENDIL-DRFLKSGLYERSDKVAATLSPAMDILISSNFE---RLLW 344 (514)
T ss_dssp EEEEEECSSSHHHHHHHHHHH-HTCCCCCEEEEECSCCHH-HHHHHHSEEECCSSCCCCSCGGGCCSSCTTHH---HHHH
T ss_pred cEEEEECCchHHHHHHHHHHH-cCCCCCEEEEEeCCcchH-HHHHhcCCccCCCCCCCeechhhhcCCCCcHH---HHHH
Confidence 999999999999999987544 55 457999999998432 21110000 0 00001122111 111110 0001
Q ss_pred HHhh-----------------------hcCC---------------CeEEeCcHHHHHHHHHHHHHh----CCcccccch
Q 012606 368 HWVE-----------------------RCRP---------------RKFGNVFEGEIEACHRIAQLT----GILVDPVYT 405 (460)
Q Consensus 368 ~l~~-----------------------~~~~---------------~~~~v~d~e~~~a~r~La~~e----GI~vEP~ys 405 (460)
.+.+ ...+ ..+.|+|+|++++++++++++ |+++||. |
T Consensus 345 ~l~~~~~~~~~~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~-t 423 (514)
T 1kl7_A 345 YLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPH-T 423 (514)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHH-H
T ss_pred HHhccccccccccccHHHHHHHHHHHHhcCCeeccHHHHHHhhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEccc-H
Confidence 1111 1111 367899999999999999999 9999997 8
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEecCCC
Q 012606 406 LAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (460)
Q Consensus 406 gaa~Aal~~~~~~~~~~g~~Vv~i~TGG~ 434 (460)
|+++++++++.++.+.++.+||++.||..
T Consensus 424 Av~~aa~~~~~~~g~~~~~~vV~l~Ta~~ 452 (514)
T 1kl7_A 424 AVGVCATERLIAKDNDKSIQYISLSTAHP 452 (514)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEECBCG
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEECCch
Confidence 89999999887543445789999999854
No 42
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=99.95 E-value=4.1e-27 Score=247.54 Aligned_cols=276 Identities=11% Similarity=0.039 Sum_probs=179.8
Q ss_pred eEEEEeCCCCCCCCchhHHHhHHhh---HHHHH-hcCCCe-EEEeCCccchHHHHHHHHHH-HhCCeEEEEecCC-CCcc
Q 012606 108 CFYVVRDDLLHPLVNGNKARKMDAL---LPLLE-DHIVTD-LVTCGGCQSAHATAVAVSCA-ERGLKSHLLLRGE-QPQI 180 (460)
Q Consensus 108 ~l~lKrEdln~p~~GsnK~Rkl~~~---l~~a~-~~g~~~-VVt~Gas~GNhg~AlA~aaa-~~Gl~~~iv~p~~-~~~~ 180 (460)
++|+|.|.+| | |||||||.+.++ +..+. +.|.+. ||+ +|+||||.|+|++++ +.|++|+||||.. .+..
T Consensus 115 ~l~vkee~~~-P-TgSFKDRga~~~~~ll~~a~~~~g~~~~Vv~--ASSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s~~ 190 (487)
T 3v7n_A 115 PVSLLELSNG-P-TLAFKDMAMQLLGNLFEYTLAKHGETLNILG--ATSGDTGSAAEYAMRGKEGVRVFMLSPHKKMSAF 190 (487)
T ss_dssp EEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHTTTCCEEEEE--ECSSHHHHHHHHHHTTCTTEEEEEEEETTCSCHH
T ss_pred ceeHHhhccC-C-cCcHHHHHHHHHHHHHHHHHHhcCCCcEEEE--eCChHHHHHHHHHHHhccCCeEEEEECCCCCCHH
Confidence 3999999998 7 999999999988 77774 567654 665 478999999776665 8999999999987 6643
Q ss_pred chhhhHHHHhCCc----EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHHhhhhhhccccccccccccccc
Q 012606 181 LTGYNLISTIYGK----VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNC 256 (460)
Q Consensus 181 ~~~~~~~~~~~Ga----V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (460)
+..+|+.||+ |+.|++ .|+++.+..++ +..+. .| ...
T Consensus 191 ---k~~qm~~~Ga~nv~vv~v~G-~fDda~~~vk~----~~~d~------------~~-------------------~~~ 231 (487)
T 3v7n_A 191 ---QTAQMYSLQDPNIFNLAVNG-VFDDCQDIVKA----VSNDH------------AF-------------------KAQ 231 (487)
T ss_dssp ---HHHHHHTCCCTTEEEEEEES-CHHHHHHHHHH----HHTCH------------HH-------------------HHH
T ss_pred ---HHHHHHhcCCCcEEEEEECC-CHHHHHHHHHH----hhhch------------HH-------------------Hhh
Confidence 3457899994 556765 57765554432 21110 00 001
Q ss_pred CCcEEEecCCCcchHHHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCC-CeEEEEeccCChhhH
Q 012606 257 RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLP-WEVTAIALVDTIDGY 335 (460)
Q Consensus 257 ~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~-~~vigVe~~g~~~~~ 335 (460)
...+.++. .||..++|+.+.+.|+..|+..+++.||.|+||+|+||+++|++.+.+ +|.. .|||+|++++ ....
T Consensus 232 -~~l~~vns--~Np~ri~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~-mGlp~~rli~a~~~n-~~l~ 306 (487)
T 3v7n_A 232 -QKIGTVNS--INWARVVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARM-MGLPIEKLVVATNEN-DVLD 306 (487)
T ss_dssp -TTEECCST--TCHHHHHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHH-TTCCEEEEEEECTTC-HHHH
T ss_pred -cCeeeeCC--CCHHHHHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHH-cCCCCceEEEEeCCC-cHHH
Confidence 12233433 478888999988888888863234579999999999999999998765 6754 5999999998 3322
Q ss_pred HHHHHh--HHHHHHHHh---cccc-c--cCCcccccchhhHHh--------------h-----------------hcCCC
Q 012606 336 KQQEKN--LISEFKRLF---GFLL-K--KSSLNEVDGEIVHWV--------------E-----------------RCRPR 376 (460)
Q Consensus 336 ~~~~~~--l~~~~~~~i---~~~~-~--p~~~~~~~~~~~~l~--------------~-----------------~~~~~ 376 (460)
+....+ .......++ ..++ + |..+.+ ..+.+. + +....
T Consensus 307 ~~~~~G~~~~~~~~~Ti~t~s~smdI~~psn~er---~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~ 383 (487)
T 3v7n_A 307 EFFRTGAYRVRSAQDTYHTSSPSMDISKASNFER---FVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFV 383 (487)
T ss_dssp HHHHHSEEEC------------------CHHHHH---HHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEE
T ss_pred HHHHcCCcccCCCCCccccCCchhccCCCccHHH---HHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcce
Confidence 221111 000111222 2211 1 100000 000000 0 01122
Q ss_pred eEEeCcHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecC-CCcchhh
Q 012606 377 KFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFG 439 (460)
Q Consensus 377 ~~~v~d~e~~~a~r~La~~eGI~vEP~ysgaa~Aal~~~~~~~~~~g~~Vv~i~TG-G~~~~~~ 439 (460)
.+.|+|+|+.++++++++++|+++||. ||++++++.++. .++.++|++.|| +.+....
T Consensus 384 ~~~VsDee~~~air~l~~~~G~l~dPh-tAva~aaa~~~~----~~~~~~V~l~Ta~p~Kf~~~ 442 (487)
T 3v7n_A 384 SGRSTHADRIATIRDVFERYRTMIDTH-TADGLKVAREHL----RPGVPMVVLETAQPIKFGES 442 (487)
T ss_dssp EECCCHHHHHHHHHHHHHHSCCCCCHH-HHHHHHHHTTSC----CTTSCEEEEECBCGGGGHHH
T ss_pred EEEECHHHHHHHHHHHHHHcCEEEChh-HHHHHHHHHHhh----CCCCcEEEEecCCccccHHH
Confidence 457899999999999999999999996 788999887653 246789999999 5554433
No 43
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=70.02 E-value=41 Score=34.02 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=25.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHHH-HhCCeEEEEecCCCC
Q 012606 140 IVTDLVTCGGCQSAHATAVAVSCA-ERGLKSHLLLRGEQP 178 (460)
Q Consensus 140 g~~~VVt~Gas~GNhg~AlA~aaa-~~Gl~~~iv~p~~~~ 178 (460)
|.++++-+|+| +..|.|.|.+.| +.|-..+++..+..+
T Consensus 49 ~pK~vLVtGaS-sGiGlA~AialAf~~GA~vi~v~~~~~~ 87 (401)
T 4ggo_A 49 APKNVLVLGCS-NGYGLASRITAAFGYGAATIGVSFEKAG 87 (401)
T ss_dssp CCCEEEEESCS-SHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHhhCCCCEEEEecCCcc
Confidence 44555545755 458888888777 679888888776543
No 44
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=64.48 E-value=7.7 Score=36.40 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 151 QSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 151 ~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
+|-.|.++|-++++.|.+++++.+..
T Consensus 28 SG~mG~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 28 TGHLGKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 78899999999999999999888754
No 45
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=63.70 E-value=16 Score=35.74 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.3
Q ss_pred HhcCCC-eEEEeCCc----------------cchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 137 EDHIVT-DLVTCGGC----------------QSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 137 ~~~g~~-~VVt~Gas----------------~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
...|.+ -+||.|++ +|..|.++|-++.+.|.+++++.+...
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 346777 67787764 499999999999999999998887543
No 46
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=60.54 E-value=17 Score=33.27 Aligned_cols=60 Identities=23% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccc-----hhhhHHHHhCCc
Q 012606 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL-----TGYNLISTIYGK 193 (460)
Q Consensus 134 ~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~-----~~~~~~~~~~Ga 193 (460)
...++.|.++|+.+|-.+...-.++|.-|..+|++++|+........+ ......|+..|.
T Consensus 147 ~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~~~~~~al~~m~~~Gv 211 (216)
T 3v8e_A 147 KYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLLDYTRPISDDPEVINKVKEELKAHNI 211 (216)
T ss_dssp HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCEEEEEEeccccHHHHHHHHHHHCCCEEEEeccccCCCCcccHHHHHHHHHHHHcCC
Confidence 334678999999888666666778999999999999998764322111 122335677775
No 47
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=57.87 E-value=19 Score=32.16 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=41.9
Q ss_pred HHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccc---hhhhHHHHhCCc
Q 012606 133 LPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL---TGYNLISTIYGK 193 (460)
Q Consensus 133 l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~---~~~~~~~~~~Ga 193 (460)
....++.|.++|+.+|-.+-..-.++|.-|..+|++++|+........+ ......|+..|+
T Consensus 117 ~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~Da~~~~~~~~~~~al~~m~~~G~ 180 (186)
T 3gbc_A 117 LNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASV 180 (186)
T ss_dssp HHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 3444678999999888666556678999999999999998765332221 122335677776
No 48
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=56.07 E-value=19 Score=33.32 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCC----ccchhhhHHHHhCCc
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP----QILTGYNLISTIYGK 193 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~----~~~~~~~~~~~~~Ga 193 (460)
.++.|+++||.+|-.+...-.++|.-|..+|++++|+-..... .........|+..|+
T Consensus 162 L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~as~~~~~~~~~aL~~m~~~g~ 223 (235)
T 2wt9_A 162 LKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQTMQQQGV 223 (235)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECCCSTTHHHHHHHHHHHTTC
T ss_pred HHHCCCCEEEEEEeCccHHHHHHHHHHHhCCCEEEEechhccCCChhHHHHHHHHHHHHcCC
Confidence 4668999999888666566678999999999999998764332 211122334566776
No 49
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=52.56 E-value=26 Score=30.78 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 107 ~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
..++-|.-+......++|..-.+. ...++.|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 89 ~~vi~K~~~~~~~~~saF~~t~L~---~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~~~Gy~v~vv~Da~~ 156 (180)
T 1im5_A 89 AVIISKATEPDKEAYSGFEGTDLA---KILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVK 156 (180)
T ss_dssp CEEEEECCSTTCCCCSTTTTSSHH---HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cEEEECCCCCCCccccCccCCCHH---HHHHhCCCCEEEEEEeecCHHHHHHHHHHHHCCCEEEEehhhcc
Confidence 356778653221213344322233 33467799999988866655667889999999999999876543
No 50
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=51.78 E-value=34 Score=30.15 Aligned_cols=60 Identities=15% Similarity=-0.002 Sum_probs=41.6
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHh-CCc-EEE
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTI-YGK-VTY 196 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~-~~~~~~~~~~~~~-~Ga-V~~ 196 (460)
.++.|.++||-+|-.+...-.++|.-|..+|++++|+..... +...... ..|+. +|+ |+-
T Consensus 105 L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~as~~~~~~a-~~m~~~~ga~v~~ 167 (182)
T 3eef_A 105 LRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVEDAVAARIDPNWK-DYFTRVYGATVKR 167 (182)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSCTTHH-HHHHHHHCCEEEC
T ss_pred HHhcCCCeEEEEEeccCHHHHHHHHHHHHCCCEEEEehhhcCCHHHHHHH-HHHHHhcCcEEeE
Confidence 467899999988866656667899999999999999876422 2222223 45666 787 543
No 51
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=51.04 E-value=19 Score=33.51 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHHHhCCeEEEEecC
Q 012606 151 QSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 151 ~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
+|--|.++|-++++.|.+++++...
T Consensus 33 Sg~iG~aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 33 SGKMGFAIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred ccHHHHHHHHHHHHCCCEEEEEECC
Confidence 7889999999999999999887654
No 52
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=50.18 E-value=29 Score=31.75 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=41.3
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccc---hhhhHHHHh-CCcEE
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL---TGYNLISTI-YGKVT 195 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~---~~~~~~~~~-~GaV~ 195 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+........+ ......|+. +|+++
T Consensus 138 L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~Gy~v~vv~Da~~~~~~~~h~~aL~~m~~~~G~~i 201 (211)
T 3o94_A 138 LRERRVSTVILTGVLTDISVLHTAIDAYNLGYDIEIVKPAVASIWPENHQFALGHFKNTLGAKL 201 (211)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTSCCEE
T ss_pred HHhCCCCeEEEEeeccChHHHHHHHHHHHCCCEEEEechhhcCCCHHHHHHHHHHHHHHCCcEE
Confidence 3667999999888666556678999999999999998765332211 112335666 88743
No 53
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=49.37 E-value=25 Score=31.75 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=40.4
Q ss_pred HHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccch---hhhHHHHhCCc
Q 012606 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILT---GYNLISTIYGK 193 (460)
Q Consensus 135 ~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~---~~~~~~~~~Ga 193 (460)
..++.|.++||.+|-.+...-.++|.-|..+|++++|+-.......+. .....|+..|+
T Consensus 120 ~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~as~~~~~h~~al~~m~~~g~ 181 (204)
T 3hu5_A 120 LLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSARTPGVAESNINDMRAMGI 181 (204)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCEEEEehhhhCCCCHHHHHHHHHHHHHhCC
Confidence 346789999998886665566788999999999999987654332221 12234555665
No 54
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=48.97 E-value=66 Score=29.29 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=48.2
Q ss_pred CchhHHHhHHhhHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEe-------cCCCCccchhhhHHHHhCCc
Q 012606 121 VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL-------RGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 121 ~GsnK~Rkl~~~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~-------p~~~~~~~~~~~~~~~~~Ga 193 (460)
+--|-+.-+...+..|++.|.+.||.+ +++|-++..++-.. .|++.++|. |+...- +......++..|.
T Consensus 24 G~eNT~~tl~la~era~e~~Ik~iVVA-S~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~-~~e~~~~L~~~G~ 99 (201)
T 1vp8_A 24 GRENTEETLRLAVERAKELGIKHLVVA-SSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTM-PPEVEEELRKRGA 99 (201)
T ss_dssp SGGGHHHHHHHHHHHHHHHTCCEEEEE-CSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSS-CHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHHcCCCEEEEE-eCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcC-CHHHHHHHHhCCC
Confidence 344667888888999999999998875 47777775555433 789999888 432211 1123334577887
Q ss_pred -EEE
Q 012606 194 -VTY 196 (460)
Q Consensus 194 -V~~ 196 (460)
|+.
T Consensus 100 ~V~t 103 (201)
T 1vp8_A 100 KIVR 103 (201)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 544
No 55
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=48.73 E-value=39 Score=31.20 Aligned_cols=58 Identities=14% Similarity=0.016 Sum_probs=39.5
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccc---hhhhHHHHhCCc
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL---TGYNLISTIYGK 193 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~---~~~~~~~~~~Ga 193 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+........+ ......|+..|+
T Consensus 152 L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~as~~~~~h~~aL~~m~~~g~ 212 (227)
T 3r2j_A 152 LHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLEDLTAAVDDAAWSARTAELKDAGV 212 (227)
T ss_dssp HHHHTCCEEEEEESCTTTHHHHHHHHHHHTTCEEEEEEEEECCSCGGGHHHHHHHHHTTTC
T ss_pred HHHcCCCEEEEEEeccchHHHHHHHHHHHCCCEEEEEhHhhCCCCHHHHHHHHHHHHHcCC
Confidence 3567999999888666556668999999999999988764332211 112334566676
No 56
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=47.08 E-value=1.2e+02 Score=24.90 Aligned_cols=32 Identities=3% Similarity=-0.006 Sum_probs=25.1
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
++|+-+|. |..|..+|......|++++++-..
T Consensus 8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECC
Confidence 34655665 789999999999999998887553
No 57
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=46.69 E-value=18 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.7
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEE
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv 172 (460)
|+-.|| |=.|.++|...++.|++++||
T Consensus 5 V~IIGa--GpaGL~aA~~La~~G~~V~v~ 31 (336)
T 3kkj_A 5 IAIIGT--GIAGLSAAQALTAAGHQVHLF 31 (336)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECc--CHHHHHHHHHHHHCCCCEEEE
Confidence 444566 679999999999999999988
No 58
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=40.27 E-value=1.8e+02 Score=29.10 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=34.1
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPR 199 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~~ 199 (460)
.+||-+|. |..|..+|-.....|++++++-.+ ++ ....++.+|. +++-+.
T Consensus 5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d--~~----~v~~~~~~g~~vi~GDa 55 (413)
T 3l9w_A 5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHD--PD----HIETLRKFGMKVFYGDA 55 (413)
T ss_dssp CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECC--HH----HHHHHHHTTCCCEESCT
T ss_pred CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECC--HH----HHHHHHhCCCeEEEcCC
Confidence 34666675 889999999999999998887543 21 2223466786 655443
No 59
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=39.66 E-value=40 Score=29.98 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 127 L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~a 168 (199)
T 1j2r_A 127 LRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACS 168 (199)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHCCCCEEEEEeeeccHHHHHHHHHHHHCCCEEEEehhhcC
Confidence 466899999988866655666899999999999998876543
No 60
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=38.54 E-value=2.5e+02 Score=26.19 Aligned_cols=37 Identities=16% Similarity=-0.114 Sum_probs=28.8
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccC
Q 012606 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (460)
Q Consensus 293 ~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g 330 (460)
.||.||++ +.+..+.++.+.+++.|..+.+++.....
T Consensus 193 ~~d~v~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 229 (356)
T 3ipc_A 193 GVSIIYWG-GLHTEAGLIIRQAADQGLKAKLVSGDGIV 229 (356)
T ss_dssp TCCEEEEE-SCHHHHHHHHHHHHHHTCCCEEEECGGGC
T ss_pred CCCEEEEc-cCchHHHHHHHHHHHCCCCCcEEEecccc
Confidence 68988865 56677889999999999988888765433
No 61
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=37.64 E-value=45 Score=29.95 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=32.6
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||.+|-.+-..-.++|.-|..+|++++|+.....
T Consensus 137 L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 178 (207)
T 1nf9_A 137 MRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIA 178 (207)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHcCCCEEEEEeeecChHHHHHHHHHHHCCCEEEEeCcccC
Confidence 356799999988755544566889999999999998876543
No 62
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=37.12 E-value=1.3e+02 Score=27.35 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=24.7
Q ss_pred CeEEEeCCcc-chHHHHHHHHHHHhCCeEEEEecC
Q 012606 142 TDLVTCGGCQ-SAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 142 ~~VVt~Gas~-GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
++++-+|+++ +--|.++|...++.|.+++++...
T Consensus 21 k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~ 55 (267)
T 3gdg_A 21 KVVVVTGASGPKGMGIEAARGCAEMGAAVAITYAS 55 (267)
T ss_dssp CEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCC
Confidence 3444457653 568999999999999988776554
No 63
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=37.05 E-value=32 Score=31.18 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=40.1
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchh---hhHHHHhCCc
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTG---YNLISTIYGK 193 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~---~~~~~~~~Ga 193 (460)
.++.|.++||-+|-.+-..-.++|.-|..+|++++|+........+.. ....|+..|+
T Consensus 100 L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~as~~~~~h~~al~~m~~~g~ 160 (208)
T 1yac_A 100 VKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGA 160 (208)
T ss_dssp HHHTTCSEEEEEEBSCCCCCHHHHHHHHHTTCEEEEETTSCBCSSHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCEEEEEEeccchhHHHHHHHHHHCCCEEEEECcccCCCCHHHHHHHHHHHHHcCC
Confidence 467899999988866555567899999999999998877654332211 1234555676
No 64
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=36.72 E-value=46 Score=30.70 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=33.5
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.++.|+++||.+|-.+...-.++|.-|..+|++++|+....
T Consensus 134 L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 174 (233)
T 3irv_A 134 LRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALSDAN 174 (233)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHhCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEechhh
Confidence 46789999998886665666789999999999999987653
No 65
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=35.93 E-value=44 Score=30.74 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=34.2
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 133 L~~~gi~~lii~G~~t~~CV~~Ta~da~~~Gy~v~vv~Da~a 174 (223)
T 3tg2_A 133 LRETGRDQLIITGVYAHIGILSTALDAFMFDIQPFVIGDGVA 174 (223)
T ss_dssp HHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHhcCcCceEEeecccChHHHHHHHHHHHCCCEEEEeCcccC
Confidence 467899999988866655667899999999999999887543
No 66
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=35.66 E-value=50 Score=29.67 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 135 ~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
..++.|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 114 ~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 156 (204)
T 3hb7_A 114 YLKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLSDGTA 156 (204)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHCCCCEEEEEeecccHHHHHHHHHHHHCCCEEEEechhcc
Confidence 3467899999988866656667899999999999999876543
No 67
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=35.23 E-value=50 Score=29.26 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=33.1
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 108 L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~~ 149 (190)
T 3lqy_A 108 LDDAGIKKLVIVGAMTHMAIDAVTRAAEDLGYECAVAHDACA 149 (190)
T ss_dssp HHHC-CCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred HHhCCCCEEEEEecCcChHHHHHHHHHHHCCCEEEEechhhc
Confidence 467899999988866666667899999999999999876543
No 68
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=34.25 E-value=54 Score=29.80 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=33.7
Q ss_pred HHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 135 ~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
..++.|.++||.+|-.+...-.++|.-|..+|++++|+....
T Consensus 103 ~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 144 (211)
T 3oqp_A 103 WLAARQIDTLTVTGYMTHNCDASTINHAVHSGLAVEFLHDAT 144 (211)
T ss_dssp HHHTTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCeEEEechhe
Confidence 346789999998886665566789999999999999987643
No 69
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=34.10 E-value=80 Score=30.91 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=29.5
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.+|+.+|-. +|.+.+++.+++++|++++++.|+.-
T Consensus 158 lkva~vGD~-~rva~Sl~~~~~~~G~~v~~~~P~~~ 192 (323)
T 3gd5_A 158 LKLAYVGDG-NNVAHSLLLGCAKVGMSIAVATPEGF 192 (323)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred CEEEEECCC-CcHHHHHHHHHHHcCCEEEEECCCcc
Confidence 456666765 89999999999999999999999754
No 70
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=32.53 E-value=94 Score=30.25 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=40.9
Q ss_pred eEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcCC---CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV---TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 108 ~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g~---~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.|.==.+|..|| + -.+.-++.--+..|. .+|...|-. +|.+.+++.+++++|++++++.|+.-
T Consensus 125 PVINa~~~~~HP-t-----QaLaDl~Ti~e~~g~l~gl~va~vGD~-~rva~Sl~~~~~~~g~~v~~~~P~~~ 190 (315)
T 1pvv_A 125 PVINGLSDFSHP-C-----QALADYMTIWEKKGTIKGVKVVYVGDG-NNVAHSLMIAGTKLGADVVVATPEGY 190 (315)
T ss_dssp CEEEEECSSCCH-H-----HHHHHHHHHHHHHSCCTTCEEEEESCC-CHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred CEEcCCCCCCCc-H-----HHHHHHHHHHHHhCCcCCcEEEEECCC-cchHHHHHHHHHHCCCEEEEECCccc
Confidence 344445667788 3 222222222233342 345557754 89999999999999999999999754
No 71
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=32.48 E-value=79 Score=28.87 Aligned_cols=35 Identities=11% Similarity=-0.136 Sum_probs=28.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC-CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~-~~~vigVe~ 328 (460)
+.||.||+. +...+.|+..++++.|. ++.|+|+.-
T Consensus 194 ~~~~ai~~~--~d~~a~g~~~al~~~g~~di~vig~d~ 229 (293)
T 3l6u_A 194 IPFDAVYCH--NDDIAMGVLEALKKAKISGKIVVGIDG 229 (293)
T ss_dssp CCCSEEEES--SHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CCCCEEEEC--CchHHHHHHHHHHhCCCCCeEEEEecC
Confidence 578998864 66788899999999887 788888864
No 72
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=32.44 E-value=56 Score=30.96 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 135 ~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
..++.|.++||.+|-.+...-.++|.-|..+|++++++.....
T Consensus 139 ~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 181 (287)
T 2fq1_A 139 MLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALA 181 (287)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHCCCCEEEEEEeCcchHHHHHHHHHHHCCCEEEEechhcc
Confidence 3467899999988865555667899999999999999876543
No 73
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=32.09 E-value=63 Score=28.88 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 121 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~G~~v~v~~Da~~ 162 (199)
T 3txy_A 121 LRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVS 162 (199)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCEEEEecHhhc
Confidence 366799999988866655667889999999999999876543
No 74
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=31.87 E-value=67 Score=29.77 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 154 L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~a 195 (236)
T 3ot4_A 154 LAQRGVQTLLVAGATTSGCVRASVVDAMSAGFRPLVLSDCVG 195 (236)
T ss_dssp HHHTTCCEEEEEESCTTTHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred HHHCCCCEEEEeCccCcHHHHHHHHHHHHCCCEEEEechhcC
Confidence 467899999988866555556999999999999999876543
No 75
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=31.32 E-value=94 Score=30.65 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=29.3
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.+|+.+|-. +|.+.+++.+++++|++++++.|+.-
T Consensus 180 lkva~vGD~-~nva~Sl~~~~~~~G~~v~~~~P~~~ 214 (340)
T 4ep1_A 180 IKLAYVGDG-NNVCHSLLLASAKVGMHMTVATPVGY 214 (340)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred CEEEEECCC-chhHHHHHHHHHHcCCEEEEECCccc
Confidence 356666755 89999999999999999999999754
No 76
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=31.26 E-value=59 Score=29.02 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=32.9
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.++.|.++||-+|-.+...-.++|.-|..+|++++|+....
T Consensus 108 L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~ 148 (198)
T 3mcw_A 108 LRANGWLELVVAGVSTSNSVEATVRMAGNLGFAVCLAEDGC 148 (198)
T ss_dssp HHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHcCCCCeEEEEEcCcChHHHHHHHHHHHCCCEEEEeCccc
Confidence 35679999998886665566789999999999999987653
No 77
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=30.62 E-value=3.3e+02 Score=25.29 Aligned_cols=36 Identities=8% Similarity=-0.101 Sum_probs=28.8
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEecc
Q 012606 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALV 329 (460)
Q Consensus 293 ~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~ 329 (460)
.||.||++ +.+..+.++.+.+++.|.++.+++....
T Consensus 194 ~~d~i~~~-~~~~~a~~~~~~~~~~g~~~p~~~~~~~ 229 (358)
T 3hut_A 194 APQAIYLA-MAYEDAAPFLRALRARGSALPVYGSSAL 229 (358)
T ss_dssp CCSEEEEE-SCHHHHHHHHHHHHHTTCCCCEEECGGG
T ss_pred CCCEEEEc-cCchHHHHHHHHHHHcCCCCcEEecCcc
Confidence 58887765 5667889999999999998888876543
No 78
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=30.20 E-value=52 Score=29.72 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=24.8
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|+-.|| |..|..+|..+++.|++++++-..
T Consensus 6 VvVVGg--G~aGl~aA~~la~~g~~v~lie~~ 35 (232)
T 2cul_A 6 VLIVGA--GFSGAETAFWLAQKGVRVGLLTQS 35 (232)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEECc--CHHHHHHHHHHHHCCCCEEEEecC
Confidence 444565 789999999999999999988654
No 79
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=29.93 E-value=47 Score=31.76 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=22.9
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~ 173 (460)
|+-.|| |=.|.++|...++.|++++|+=
T Consensus 7 ViIVGa--GpaGl~~A~~La~~G~~V~v~E 34 (397)
T 3oz2_A 7 VLVVGG--GPGGSTAARYAAKYGLKTLMIE 34 (397)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEECc--CHHHHHHHHHHHHCCCcEEEEe
Confidence 444465 6799999999999999998883
No 80
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=29.76 E-value=67 Score=30.31 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=31.5
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.++.|+++||.+|-.+...-.++|.-|..+|++++|+....
T Consensus 159 Lr~~gi~~lvI~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~DA~ 199 (264)
T 1nba_A 159 LTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETI 199 (264)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEGGGE
T ss_pred HHhCCCCEEEEEecCcCCHHHHHHHHHHHCCCEEEEecccc
Confidence 35689999998875543344489999999999999887653
No 81
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=29.69 E-value=65 Score=28.82 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+....
T Consensus 118 L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~ 158 (197)
T 4h17_A 118 LQELGHLDLIVCGFMSHSSVSTTVRRAKDYGYRCTLVEDAS 158 (197)
T ss_dssp HHHHTCSEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHhcCCCEEEEEeeCcCHHHHHHHHHHHHCCCEEEEeCccc
Confidence 35679999998876655566688999999999999987654
No 82
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=29.67 E-value=1.2e+02 Score=29.92 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=29.5
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.+|+.+|-. +|.+.+++.+++++|++++++.|+.-
T Consensus 176 lkva~vGD~-~rva~Sl~~~~~~~G~~v~~~~P~~~ 210 (339)
T 4a8t_A 176 CKVVFVGDA-TQVCFSLGLITTKMGMNFVHFGPEGF 210 (339)
T ss_dssp CEEEEESSC-CHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred CEEEEECCC-chhHHHHHHHHHHcCCEEEEECCccc
Confidence 356667765 89999999999999999999999754
No 83
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=29.39 E-value=63 Score=27.91 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.9
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.++.|.++||-+|-.+...-.++|.-|..+|++++++...
T Consensus 96 L~~~gi~~lvv~G~~T~~CV~~Ta~da~~~Gy~v~v~~Da 135 (167)
T 2a67_A 96 LTEQAVQTLEIAGVQTEFCVDTTIRMAHGLGYTCLMTPKT 135 (167)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEECTTC
T ss_pred HHHCCCCEEEEEecccChHHHHHHHHHHHCCCEEEEechh
Confidence 3567999999887555445568899999999998877554
No 84
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=28.90 E-value=1.7e+02 Score=28.21 Aligned_cols=55 Identities=4% Similarity=-0.182 Sum_probs=37.2
Q ss_pred CeEEEeCCc-cchHHHHHHHHHHHh-CCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeC
Q 012606 142 TDLVTCGGC-QSAHATAVAVSCAER-GLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVP 198 (460)
Q Consensus 142 ~~VVt~Gas-~GNhg~AlA~aaa~~-Gl~~~iv~p~~~-~~~~~~~~~~~~~~Ga-V~~v~ 198 (460)
.+|+..|-. .+|.+.+++.+++++ |++++++.|+.- ++.. -...++..|. +..+.
T Consensus 152 lkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~--~~~~~~~~g~~~~~~~ 210 (306)
T 4ekn_B 152 IKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKD--IIEDLKAKNIKFYEKE 210 (306)
T ss_dssp CEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHH--HHHHHHHTTCCEEEES
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHH--HHHHHHHcCCEEEEEc
Confidence 356556654 379999999999999 999999999743 2211 1123456786 65543
No 85
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=28.88 E-value=51 Score=31.76 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=23.5
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEE
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv 172 (460)
+|+-.|| |=.|.++|.+.++.|++++||
T Consensus 3 ~V~IVGa--GpaGl~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 3 HVGIIGA--GIGGTCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECc--CHHHHHHHHHHHhCCCCEEEE
Confidence 3555576 669999999999999999988
No 86
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=28.82 E-value=69 Score=31.00 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.2
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
++|.-.||++ .|..+|.+|+++|++++++-+.
T Consensus 2 K~I~ilGgg~--~g~~~~~~Ak~~G~~vv~vd~~ 33 (363)
T 4ffl_A 2 KTICLVGGKL--QGFEAAYLSKKAGMKVVLVDKN 33 (363)
T ss_dssp CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4566667644 8899999999999999988543
No 87
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=28.48 E-value=58 Score=29.29 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=31.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 140 g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
|.++||.+|-.+...-.++|.-|..+|++++|+.....
T Consensus 106 gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~a 143 (200)
T 1x9g_A 106 DVDNAVVFGIEGHACILQTVADLLDMNKRVFLPKDGLG 143 (200)
T ss_dssp TCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEGGGEE
T ss_pred CCCEEEEEEEecCcHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 99999988866666667899999999999998876543
No 88
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=28.34 E-value=72 Score=27.07 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=25.3
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
|+-.|| |..|..+|...++.|.+++++-+..
T Consensus 4 vvIIGg--G~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 4 VIVVGG--GPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 444565 7899999999999999999987653
No 89
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=28.18 E-value=1.6e+02 Score=28.13 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=35.3
Q ss_pred hHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 012606 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 132 ~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga 193 (460)
++..+...|.++|+..|| +|.-|.+++..|+.+|.+++++.+... +...++.+|+
T Consensus 156 ~~~~~~~~g~~~vli~gg-~g~vG~~a~qla~~~Ga~Vi~~~~~~~------~~~~~~~~Ga 210 (349)
T 3pi7_A 156 MFDIVKQEGEKAFVMTAG-ASQLCKLIIGLAKEEGFRPIVTVRRDE------QIALLKDIGA 210 (349)
T ss_dssp HHHHHHHHCCSEEEESST-TSHHHHHHHHHHHHHTCEEEEEESCGG------GHHHHHHHTC
T ss_pred HHHHHhhCCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHHcCC
Confidence 344445555456665543 467999999999999997666554321 2234567897
No 90
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=28.16 E-value=1.2e+02 Score=29.36 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=29.3
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.+|...|-. +|.+.+++.+++++|++++++.|+.-
T Consensus 155 l~ia~vGD~-~rva~Sl~~~~~~~g~~v~~~~P~~~ 189 (301)
T 2ef0_A 155 LEVAWVGDG-NNVLNSLLEVAPLAGLKVRVATPKGY 189 (301)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred cEEEEECCC-chhHHHHHHHHHHcCCEEEEECCchh
Confidence 345557754 89999999999999999999999754
No 91
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=28.15 E-value=54 Score=30.69 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=22.6
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~ 173 (460)
|+-.|| |-.|.+.|..++++|++++|+=
T Consensus 9 VvIIGa--GpAGlsAA~~lar~g~~v~lie 36 (304)
T 4fk1_A 9 CAVIGA--GPAGLNASLVLGRARKQIALFD 36 (304)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 444565 6689999999999999998873
No 92
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=28.15 E-value=93 Score=26.00 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 141 VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 141 ~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.++|+-+|+ |.-|..+|...+..|.+++++-+.
T Consensus 19 ~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 19 SKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECC
Confidence 356666675 889999999999999988777543
No 93
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=27.74 E-value=46 Score=30.95 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.0
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~ 173 (460)
|+-.|| |-.|.+.|..++++|++++++=
T Consensus 7 vvIIG~--GpAGl~AA~~la~~g~~v~liE 34 (314)
T 4a5l_A 7 VVIIGS--GPAAHTAAIYLGRSSLKPVMYE 34 (314)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 454576 5699999999999999998873
No 94
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=27.74 E-value=54 Score=31.03 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=24.7
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.||-.|| |-.|.++|+.+++.|++++|+=..
T Consensus 6 dvvIIG~--G~~Gl~~A~~La~~G~~V~vlE~~ 36 (369)
T 3dme_A 6 DCIVIGA--GVVGLAIARALAAGGHEVLVAEAA 36 (369)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3555565 779999999999999998887443
No 95
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=27.72 E-value=53 Score=31.95 Aligned_cols=31 Identities=39% Similarity=0.484 Sum_probs=24.3
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.||-.|| |-.|.++|+.+++.|++++|+=..
T Consensus 6 DVvIIGa--G~~Gl~~A~~La~~G~~V~vlE~~ 36 (397)
T 2oln_A 6 DVVVVGG--GPVGLATAWQVAERGHRVLVLERH 36 (397)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3554575 779999999999999998777443
No 96
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=27.38 E-value=1.2e+02 Score=27.85 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=28.7
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC---CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL---PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~---~~~vigVe~ 328 (460)
+.+|.+++-+.+...+.|+..++++.|. ++.|+|+.-
T Consensus 194 ~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 194 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 233 (306)
T ss_dssp TTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEESS
T ss_pred CCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEEeCc
Confidence 5788855556777889999999999886 577888754
No 97
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=27.13 E-value=1.4e+02 Score=29.66 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=29.6
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.+|+.+|-. +|.+.+++.+++++|++++++.|+.-
T Consensus 154 lkva~vGD~-~rva~Sl~~~~~~~G~~v~~~~P~~~ 188 (355)
T 4a8p_A 154 CKVVFVGDA-TQVCFSLGLITTKMGMNFVHFGPEGF 188 (355)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred CEEEEECCC-chhHHHHHHHHHHcCCEEEEECCCcc
Confidence 356667765 89999999999999999999999754
No 98
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=27.09 E-value=1.3e+02 Score=27.44 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=28.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEecc
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIALV 329 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~~ 329 (460)
+.||.||+. +...+.|+..++++.|. ++.|+|.+-.
T Consensus 184 ~~~~ai~~~--~d~~A~g~~~al~~~g~~vP~di~vig~D~~ 223 (289)
T 3k9c_A 184 TPPTAVVAF--NDRCATGVLDLLVRSGRDVPADISVVGYDDS 223 (289)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCceEEEEECCH
Confidence 579998864 56788899999998874 5789998753
No 99
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=27.00 E-value=1.3e+02 Score=29.16 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=29.3
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
+|...|-..+|.+.+++.+++++|++++++.|+.-
T Consensus 150 ~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~ 184 (307)
T 2i6u_A 150 RLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGF 184 (307)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred EEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccc
Confidence 45557764479999999999999999999999754
No 100
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=26.83 E-value=1.6e+02 Score=28.73 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=35.8
Q ss_pred hHHHHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 012606 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 132 ~l~~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga 193 (460)
++..+...|.+-+|. |+..|.-|.+.+..|+.+|.+++++.+.. .+...++.+|+
T Consensus 163 ~~~~~~~~g~~vlV~-gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~------~~~~~~~~lGa 217 (379)
T 3iup_A 163 MVETMRLEGHSALVH-TAAASNLGQMLNQICLKDGIKLVNIVRKQ------EQADLLKAQGA 217 (379)
T ss_dssp HHHHHHHTTCSCEEE-SSTTSHHHHHHHHHHHHHTCCEEEEESSH------HHHHHHHHTTC
T ss_pred HHHHhccCCCEEEEE-CCCCCHHHHHHHHHHHHCCCEEEEEECCH------HHHHHHHhCCC
Confidence 344445566565664 33347799999999999999866665421 12335677997
No 101
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=26.57 E-value=78 Score=28.94 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 136 a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.++.|.++||.+|-.+...-.++|.-|..+|++++|+....
T Consensus 146 L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~ 186 (226)
T 3kl2_A 146 LRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCV 186 (226)
T ss_dssp HHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HhCCCCCcEEEeccCcchHHHHHHHHHHHCCCEEEEechhh
Confidence 46679999998886665566788999999999999987653
No 102
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=26.49 E-value=52 Score=33.16 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.6
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEE
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv 172 (460)
+||-.|| |-.|.+.|+..++.|++++|+
T Consensus 3 ~VvVIGa--G~~GL~aA~~La~~G~~V~Vl 30 (501)
T 4dgk_A 3 PTTVIGA--GFGGLALAIRLQAAGIPVLLL 30 (501)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEECC--cHHHHHHHHHHHHCCCcEEEE
Confidence 4555676 789999999999999999886
No 103
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=26.29 E-value=3.7e+02 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 140 g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|+.-||| |++ |--|.++|...++.|.+++++-..
T Consensus 11 ~k~~lVT-Gas-~gIG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 11 GKVAFVT-GAA-RGQGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp TCEEEEE-STT-SHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEe-CCC-chHHHHHHHHHHHCCCeEEEEecc
Confidence 4444555 654 468999999999999998776543
No 104
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=26.25 E-value=61 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.4
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEE
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv 172 (460)
||-.|| |-.|.+.|..++++|++++|+
T Consensus 9 vvIIG~--GpAGl~aA~~l~~~g~~V~li 35 (312)
T 4gcm_A 9 IAIIGA--GPAGMTAAVYASRANLKTVMI 35 (312)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEE
Confidence 444566 569999999999999999988
No 105
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.82 E-value=1.3e+02 Score=27.23 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=27.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||+. +...+.|+..++++.|. ++.|+|..-
T Consensus 191 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vig~d~ 229 (292)
T 3k4h_A 191 QPPTAIMAT--DDLIGLGVLSALSKKGFVVPKDVSIVSFNN 229 (292)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCcEEEEc--ChHHHHHHHHHHHHhCCCCCCeEEEEEecC
Confidence 578998854 66788899999998874 567888753
No 106
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=25.37 E-value=1.1e+02 Score=29.82 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=29.1
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
+|...|-..+|.+.+++.+++++|++++++.|+.-
T Consensus 169 ~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~ 203 (325)
T 1vlv_A 169 KVVFMGDTRNNVATSLMIACAKMGMNFVACGPEEL 203 (325)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGG
T ss_pred EEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccc
Confidence 45557764479999999999999999999999753
No 107
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=25.05 E-value=65 Score=31.48 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=24.9
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 25 dV~IVGa--G~aGl~~A~~La~~G~~V~v~E~~ 55 (407)
T 3rp8_A 25 KAIVIGA--GIGGLSAAVALKQSGIDCDVYEAV 55 (407)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4555676 679999999999999998888443
No 108
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=25.02 E-value=68 Score=32.17 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=25.1
Q ss_pred hcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 138 DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 138 ~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
.+..+-|| .|| |-.|.++|..+++.|++++|+=.
T Consensus 24 ~~~~dVvI-IGg--G~aGl~aA~~la~~G~~V~llEk 57 (447)
T 2i0z_A 24 AMHYDVIV-IGG--GPSGLMAAIGAAEEGANVLLLDK 57 (447)
T ss_dssp -CCCSEEE-ECC--SHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCCCCEEE-ECC--cHHHHHHHHHHHHCCCCEEEEEC
Confidence 34445444 565 77999999999999999887743
No 109
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=24.94 E-value=64 Score=30.27 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=23.5
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+-.|| |=.|.++|...++.|++++|+=.
T Consensus 5 V~IIGa--G~~Gl~~A~~L~~~G~~V~vlE~ 33 (336)
T 1yvv_A 5 IAIIGT--GIAGLSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEECC--cHHHHHHHHHHHHCCCcEEEEEC
Confidence 444566 67999999999999999888743
No 110
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=24.83 E-value=67 Score=31.09 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=25.7
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
..|+-.|| |-.|.++|...++.|++++|+=..
T Consensus 12 ~dVvIVGa--G~aGl~~A~~L~~~G~~v~viE~~ 43 (379)
T 3alj_A 12 RRAEVAGG--GFAGLTAAIALKQNGWDVRLHEKS 43 (379)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECC--CHHHHHHHHHHHHCCCCEEEEecC
Confidence 35665676 679999999999999999888543
No 111
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Probab=24.81 E-value=4.5e+02 Score=26.39 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=25.0
Q ss_pred CCeEEEeCCccchHHHHHHHHHHH-hCCeEEEEecCC
Q 012606 141 VTDLVTCGGCQSAHATAVAVSCAE-RGLKSHLLLRGE 176 (460)
Q Consensus 141 ~~~VVt~Gas~GNhg~AlA~aaa~-~Gl~~~iv~p~~ 176 (460)
-+.++-+|+++ .-|.|+|...++ .|.+++++-...
T Consensus 47 gKvaLVTGas~-GIG~AiA~~LA~g~GA~Vv~~~~~~ 82 (405)
T 3zu3_A 47 PKRVLVIGAST-GYGLAARITAAFGCGADTLGVFFER 82 (405)
T ss_dssp CSEEEEESCSS-HHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred CCEEEEeCcch-HHHHHHHHHHHHhcCCEEEEEeCCc
Confidence 34444457554 589999999999 999988765543
No 112
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=24.76 E-value=55 Score=29.55 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=34.1
Q ss_pred HHHhcCCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 135 ~a~~~g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
..++.|.++||.+|-.+...-.++|.-|..+|++++++.....
T Consensus 104 ~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 146 (204)
T 1yzv_A 104 LVDLPEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAVDGCG 146 (204)
T ss_dssp HHSSTTEEEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEECCccC
Confidence 3456789999988866666667899999999999999876543
No 113
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=24.74 E-value=4.6e+02 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 012606 294 AIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (460)
Q Consensus 294 pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~ 332 (460)
++..|+..++|-+..+++.+.+.+| ++++.|.|...+
T Consensus 72 ~~~~vv~aSsGN~g~alA~aa~~~G--~~~~iv~p~~~~ 108 (325)
T 3dwg_A 72 PGATILEPTSGNTGISLAMAARLKG--YRLICVMPENTS 108 (325)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--CEEEEEEESSSC
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcC--CcEEEEECCCCC
Confidence 4444556678999999998888776 555666776643
No 114
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.71 E-value=1.2e+02 Score=28.54 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.1
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|.+-
T Consensus 241 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~vvg~D~ 279 (338)
T 3dbi_A 241 AKFSALVA--SNDDMAIGAMKALHERGVAVPEQVSVIGFDD 279 (338)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeEEEEECC
Confidence 57999986 456788899999999874 577998874
No 115
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=24.63 E-value=2.5e+02 Score=26.51 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=32.3
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga 193 (460)
++|+..|+ |--|...+..|+.+|.+.++.+.... .+..+++.+|+
T Consensus 162 ~~VlV~Ga--G~vG~~aiq~ak~~G~~~vi~~~~~~-----~k~~~a~~lGa 206 (346)
T 4a2c_A 162 KNVIIIGA--GTIGLLAIQCAVALGAKSVTAIDISS-----EKLALAKSFGA 206 (346)
T ss_dssp SEEEEECC--SHHHHHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTTC
T ss_pred CEEEEECC--CCcchHHHHHHHHcCCcEEEEEechH-----HHHHHHHHcCC
Confidence 45555565 55888999999999999887775432 23345788997
No 116
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=24.18 E-value=68 Score=30.78 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=24.8
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.||-.|| |=.|.++|+.+++.|++++|+=..
T Consensus 19 dvvIIGg--G~~Gl~~A~~La~~G~~V~llE~~ 49 (382)
T 1ryi_A 19 EAVVIGG--GIIGSAIAYYLAKENKNTALFESG 49 (382)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4555576 679999999999999998887543
No 117
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=24.10 E-value=75 Score=31.03 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=23.6
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEe
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~ 173 (460)
+||-.|| |-.|.+.|+..++.|++++|+=
T Consensus 2 dVvVIGa--GiaGLsaA~~La~~G~~V~vlE 30 (425)
T 3ka7_A 2 KTVVIGA--GLGGLLSAARLSKAGHEVEVFE 30 (425)
T ss_dssp EEEEECC--BHHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEECC--CHHHHHHHHHHHhCCCceEEEe
Confidence 3455575 7899999999999999988873
No 118
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.99 E-value=1e+02 Score=27.84 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=26.8
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.|| +.+...+.|+..++++.|. ++.|+|+.-
T Consensus 179 ~~~~ai~--~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 217 (276)
T 2h0a_A 179 SPPLNVF--AGADQVALGVLEEAVRLGLTPGRDVRVLGFDG 217 (276)
T ss_dssp CSSEEEE--CSSHHHHHHHHHHHHTTSCTTTTSEEEEEESC
T ss_pred CCCCEEE--ECCcHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Confidence 4689888 4577888999999998875 356887754
No 119
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=23.83 E-value=69 Score=30.79 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=24.6
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 6 dVvIvG~--G~aGl~~A~~La~~G~~V~l~E~~ 36 (397)
T 3cgv_A 6 DVLVVGG--GPGGSTAARYAAKYGLKTLMIEKR 36 (397)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3555576 669999999999999998888544
No 120
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=23.81 E-value=69 Score=31.17 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.0
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.|+-.|| |-.|.++|...++.|++++|+=..
T Consensus 8 dVvIVGa--G~aGl~~A~~L~~~G~~V~viE~~ 38 (399)
T 2x3n_A 8 DVLINGC--GIGGAMLAYLLGRQGHRVVVVEQA 38 (399)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4555676 679999999999999999888543
No 121
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=23.70 E-value=1.4e+02 Score=29.19 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=29.5
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
.+|...|-..+|.+.+++.+++++|++++++.|+.-
T Consensus 156 l~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~ 191 (333)
T 1duv_G 156 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC 191 (333)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred cEEEEECCCccchHHHHHHHHHHcCCEEEEECCccc
Confidence 345557764479999999999999999999999753
No 122
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.62 E-value=4.1e+02 Score=24.00 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=27.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC--CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL--PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~--~~~vigVe~ 328 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|++.
T Consensus 186 ~~~~ai~~--~~d~~a~g~~~al~~~g~~~di~vig~d~ 222 (305)
T 3g1w_A 186 PNLAGIFA--TEANGGVGVGDAVRLESRAGEIQIISFDT 222 (305)
T ss_dssp TTEEEEEE--SSHHHHHHHHHHHHHTTCTTTSEEEEESC
T ss_pred CCceEEEE--CCCcchhhHHHHHHhcCCCCCeEEEEeCC
Confidence 46888875 456778899999998886 688998764
No 123
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=23.55 E-value=1.6e+02 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=27.7
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEe
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIA 327 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe 327 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|+.
T Consensus 187 ~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 187 NTPKALFC--NSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCcEEEE--cCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 57899886 467788999999998874 57799987
No 124
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=23.23 E-value=75 Score=31.67 Aligned_cols=32 Identities=3% Similarity=0.078 Sum_probs=26.0
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.|+-.|| |=.|.++|...++.|++++|+=...
T Consensus 24 ~ViIVGa--GpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 24 RIGIVGA--GTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp EEEEECC--HHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CEEEECC--cHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4555676 6699999999999999999986543
No 125
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=23.22 E-value=1.8e+02 Score=28.11 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=28.6
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
+|..+|- .+|.+.+++.+++++|++++++.|+.-
T Consensus 148 ~va~vGD-~~~va~Sl~~~~~~~G~~v~~~~P~~~ 181 (307)
T 3tpf_A 148 KVAFIGD-SNNMCNSWLITAAILGFEISIAMPKNY 181 (307)
T ss_dssp EEEEESC-SSHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred EEEEEcC-CCccHHHHHHHHHHcCCEEEEECCCcc
Confidence 4555675 589999999999999999999999754
No 126
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=23.09 E-value=1.3e+02 Score=27.58 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=28.0
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|.+-
T Consensus 186 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~vig~D~ 224 (294)
T 3qk7_A 186 VPPTAIIT--DCNMLGDGVASALDKAGLLGGEGISLIAYDG 224 (294)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCSSTTSCEEEEETC
T ss_pred CCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEeecC
Confidence 57999986 467788999999999874 577888764
No 127
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=22.86 E-value=1.4e+02 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=28.2
Q ss_pred CeEEEeCCc-cchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 142 TDLVTCGGC-QSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 142 ~~VVt~Gas-~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.+|+..|-. .+|.+.+++.+++++|++++++.|+.
T Consensus 148 lkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~ 183 (304)
T 3r7f_A 148 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSE 183 (304)
T ss_dssp CEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGG
T ss_pred CEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCc
Confidence 356656654 36899999999999999999998864
No 128
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=22.61 E-value=3.7e+02 Score=24.65 Aligned_cols=33 Identities=27% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 140 g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
++.-||| |++ |--|.++|...++.|.+++++-.
T Consensus 25 ~k~~lVT-Gas-~GIG~~ia~~la~~G~~V~~~~r 57 (281)
T 3v2h_A 25 TKTAVIT-GST-SGIGLAIARTLAKAGANIVLNGF 57 (281)
T ss_dssp TCEEEEE-TCS-SHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEe-CCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 4344554 654 56899999999999987766543
No 129
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=22.56 E-value=67 Score=31.12 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=23.5
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+-.|| |=.|.++|...++.|++++|+=.
T Consensus 5 V~IvGa--G~aGl~~A~~L~~~G~~v~v~E~ 33 (394)
T 1k0i_A 5 VAIIGA--GPSGLLLGQLLHKAGIDNVILER 33 (394)
T ss_dssp EEEECC--SHHHHHHHHHHHHHTCCEEEECS
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEeC
Confidence 444566 66999999999999999988844
No 130
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=22.43 E-value=2.4e+02 Score=26.92 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=29.6
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga 193 (460)
++|+-.|+ |.-|.+++..|+.+|.+++++.+.. + +..+++.+|+
T Consensus 178 ~~VlV~Ga--G~vG~~a~qla~~~Ga~Vi~~~~~~--~----~~~~~~~lGa 221 (348)
T 3two_A 178 TKVGVAGF--GGLGSMAVKYAVAMGAEVSVFARNE--H----KKQDALSMGV 221 (348)
T ss_dssp CEEEEESC--SHHHHHHHHHHHHTTCEEEEECSSS--T----THHHHHHTTC
T ss_pred CEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCCH--H----HHHHHHhcCC
Confidence 45554664 6799999999999999755544321 1 2234577997
No 131
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=22.31 E-value=73 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=23.8
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
.||..|+ |..|.+.|..+++.|++++|+=.
T Consensus 43 DVvVVGa--G~AGl~AA~~aa~~G~~V~vlEk 72 (510)
T 4at0_A 43 DVVVAGY--GIAGVAASIEAARAGADVLVLER 72 (510)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCcEEEEeC
Confidence 3555565 78999999999999999777643
No 132
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.28 E-value=1.2e+02 Score=27.38 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=26.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||+. +...+.|+..++++.|. ++.|+|+.-
T Consensus 199 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 237 (296)
T 3brq_A 199 AKFSALVAS--NDDMAIGAMKALHERGVAVPEQVSVIGFDD 237 (296)
T ss_dssp -CCSEEEES--SHHHHHHHHHHHHHHTCCTTTTCEEEEESC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCceEEEeecC
Confidence 468998864 56778899999998774 467888764
No 133
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=21.93 E-value=76 Score=30.28 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=24.1
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
||-.|| |=.|.++|+..++.|++++|+=..
T Consensus 5 vvIIG~--Gi~Gl~~A~~La~~G~~V~vle~~ 34 (372)
T 2uzz_A 5 LIIIGS--GSVGAAAGYYATRAGLNVLMTDAH 34 (372)
T ss_dssp EEESCT--THHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEEecC
Confidence 555565 679999999999999998877443
No 134
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=21.90 E-value=84 Score=30.06 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=24.3
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
.||-.|+ |=.|.++|+..++.|++++|+=.
T Consensus 8 dVvVIG~--Gi~Gls~A~~La~~G~~V~vle~ 37 (363)
T 1c0p_A 8 RVVVLGS--GVIGLSSALILARKGYSVHILAR 37 (363)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCEEEEEec
Confidence 4555676 77999999999999999888743
No 135
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=21.87 E-value=67 Score=31.35 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.7
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
.||-.|| |-.|.++|...++.|++++|+=..
T Consensus 7 dVvIIGg--G~aGl~~A~~La~~G~~V~v~E~~ 37 (421)
T 3nix_A 7 DVLVIGA--GPAGTVAASLVNKSGFKVKIVEKQ 37 (421)
T ss_dssp EEEEECC--SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECC--CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3555576 669999999999999998888544
No 136
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=21.66 E-value=1.3e+02 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||+. +...+.|+..++++.|. ++.|+|..-
T Consensus 175 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 213 (280)
T 3gyb_A 175 PEVTAIFSS--NDITAIGALGAARELGLRVPEDLSIIGYDN 213 (280)
T ss_dssp TTCCEEEES--SHHHHHHHHHHHHHHTCCTTTTCEEEEESC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCeeEEEEECC
Confidence 578998864 56788999999998874 578888763
No 137
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=21.66 E-value=97 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=25.4
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
..|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 6 ~~V~IVGa--G~aGl~~A~~L~~~G~~v~v~E~~ 37 (397)
T 2vou_A 6 DRIAVVGG--SISGLTAALMLRDAGVDVDVYERS 37 (397)
T ss_dssp SEEEEECC--SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEEECC--CHHHHHHHHHHHhCCCCEEEEecC
Confidence 34555676 679999999999999999988443
No 138
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=21.63 E-value=82 Score=30.22 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=23.8
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
||-.|| |=.|.++|+..++.|++++|+=..
T Consensus 6 vvIIGa--G~~Gl~~A~~La~~G~~V~vie~~ 35 (389)
T 2gf3_A 6 VIVVGA--GSMGMAAGYQLAKQGVKTLLVDAF 35 (389)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECC--CHHHHHHHHHHHhCCCeEEEEeCC
Confidence 444565 679999999999999998877443
No 139
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=21.54 E-value=2.2e+02 Score=26.47 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=36.5
Q ss_pred cEEEecCCCcchH-HHHHHHHHHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccCC
Q 012606 259 KVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT 331 (460)
Q Consensus 259 ~~y~ip~g~~np~-~~~G~~t~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~ 331 (460)
+.+++|....+.. ........+.+..++. . .++ -++++|+|.|+..++..+......-.+.-|+..|.
T Consensus 28 ~v~Vvp~~~~~~~~~~~~lg~~aA~~L~~~-l---~~~-~vIGv~wG~Tl~~v~~~l~~~~~~~~~~~V~l~Gg 96 (266)
T 3efb_A 28 DVVVVSGNDEDEETQLAMMGLHGAQLLDRL-L---EPG-DIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGG 96 (266)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHHHHHHHHH-C---CTT-CEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCB
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHHHHh-C---CCC-CEEEEcccHHHHHHHHhcCccCCCCCeEEEEcCCC
Confidence 5678886433322 2221222344444443 1 223 36889999999998877643211113555677665
No 140
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=21.45 E-value=1.1e+02 Score=28.22 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.1
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCCeEEEEeccC
Q 012606 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (460)
Q Consensus 293 ~pD~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g 330 (460)
.+...|+.+|||+-..+++.+. .++..+|+||+...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~--~~~~~~V~avDi~~ 49 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVE--RGQIKSAIAGEVVE 49 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHH--TTSEEEEEEEESSH
T ss_pred CCCCEEEEeCCCcHHHHHHHHH--hCCCCEEEEEECCH
Confidence 4567899999999998887664 46778999999855
No 141
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=21.38 E-value=2.7e+02 Score=26.88 Aligned_cols=56 Identities=7% Similarity=-0.066 Sum_probs=36.7
Q ss_pred CeEEEeCCc-cchHHHHHHHHHHHh-CCeEEEEecCCCCccchhhhHHHHhCCc-EEEeC
Q 012606 142 TDLVTCGGC-QSAHATAVAVSCAER-GLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVP 198 (460)
Q Consensus 142 ~~VVt~Gas-~GNhg~AlA~aaa~~-Gl~~~iv~p~~~~~~~~~~~~~~~~~Ga-V~~v~ 198 (460)
.+|...|-. .||.+.+++.+++++ |++++++.|+.-...+ .....++..|. +..+.
T Consensus 155 l~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~-~~~~~~~~~g~~~~~~~ 213 (310)
T 3csu_A 155 LHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQ-YILDMLDEKGIAWSLHS 213 (310)
T ss_dssp CEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCH-HHHHHHHHTTCCEEECS
T ss_pred cEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCH-HHHHHHHHcCCeEEEEc
Confidence 345556653 379999999999999 9999999997542111 11123455675 55543
No 142
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.30 E-value=1.2e+02 Score=27.65 Aligned_cols=36 Identities=17% Similarity=-0.022 Sum_probs=28.4
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEecc
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIALV 329 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~~ 329 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|++-.
T Consensus 188 ~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~ 227 (290)
T 2rgy_A 188 APFTGLFC--ANDTMAVSALARFQQLGISVPGDVSVIGYDDD 227 (290)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEEEeCCc
Confidence 47899985 566788999999998874 4679988753
No 143
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=21.27 E-value=89 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=24.8
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
+|+-.|| |-.|.++|...++.|++++++=+.
T Consensus 4 ~vvIIG~--G~aGl~aA~~l~~~g~~v~lie~~ 34 (297)
T 3fbs_A 4 DVIIIGG--SYAGLSAALQLGRARKNILLVDAG 34 (297)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3555576 679999999999999999888543
No 144
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.25 E-value=1.7e+02 Score=27.42 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=28.2
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEecc
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIALV 329 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~~ 329 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|.+-.
T Consensus 237 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvig~D~~ 276 (340)
T 1qpz_A 237 HRPTAVFC--GGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 276 (340)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEEeECCc
Confidence 47899886 466788999999998875 4678888753
No 145
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=21.20 E-value=1.5e+02 Score=28.72 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=28.5
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~ 176 (460)
.+|..+|- .+|.+.+++.+++++|++++++.|+.
T Consensus 155 lkva~vGD-~~~va~Sl~~~~~~~G~~v~~~~P~~ 188 (309)
T 4f2g_A 155 KTVAWVGD-ANNMLYTWIQAARILDFKLQLSTPPG 188 (309)
T ss_dssp CEEEEESC-CCHHHHHHHHHHHHHTCEEEEECCGG
T ss_pred CEEEEECC-CcchHHHHHHHHHHcCCEEEEECCcc
Confidence 35655675 48999999999999999999999864
No 146
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=21.13 E-value=76 Score=31.29 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=24.2
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCC-eEEEEecC
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGL-KSHLLLRG 175 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl-~~~iv~p~ 175 (460)
.||-.|| |-.|.++|+.+++.|+ +++|+=..
T Consensus 8 dVvIIGg--G~aGlsaA~~La~~G~~~V~vlE~~ 39 (438)
T 3dje_A 8 SLLIVGA--GTWGTSTALHLARRGYTNVTVLDPY 39 (438)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CEEEECC--CHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 3554576 7799999999999999 88777443
No 147
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=21.04 E-value=2.1e+02 Score=25.37 Aligned_cols=44 Identities=14% Similarity=-0.047 Sum_probs=32.1
Q ss_pred HHHHHHHhHHcCCC-CCCEEEEecCCchhHHHHHHHHHhcC---CCCeEEEEec
Q 012606 279 LLQYLSQDHLLGRK-RAIKFVVDAGTGTTAVGLGLGAICLG---LPWEVTAIAL 328 (460)
Q Consensus 279 ~~~Ei~eq~~~~~~-~pD~vvv~vGtGgt~~Gl~~~~~~~g---~~~~vigVe~ 328 (460)
...+++++. + .||.||+ .+...+.|+..++++.| .++.|+|++-
T Consensus 169 ~~~~~l~~~----~~~~~ai~~--~~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 169 LMQQLIDDL----GGLPDALVT--TSYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp HHHHHHHHH----TSCCSEEEE--SSHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred HHHHHHhcC----CCCCcEEEE--eCchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 345555542 4 6899886 46678899999999988 3678888764
No 148
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.00 E-value=1.7e+02 Score=26.73 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~ 328 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|.+-
T Consensus 194 ~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di~vvg~D~ 232 (289)
T 2fep_A 194 KKPTAILS--ATDEMALGIIHAAQDQGLSIPEDLDIIGFDN 232 (289)
T ss_dssp SCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred CCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEEEECC
Confidence 47899886 456788999999998874 467888864
No 149
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=20.94 E-value=5.5e+02 Score=24.52 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=25.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 140 g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
|+.-||| |++ |--|.++|...++.|.+++++-+...
T Consensus 45 gk~vlVT-Gas-~GIG~aia~~La~~Ga~Vvl~~r~~~ 80 (346)
T 3kvo_A 45 GCTVFIT-GAS-RGIGKAIALKAAKDGANIVIAAKTAQ 80 (346)
T ss_dssp TCEEEEE-TTT-SHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred CCEEEEe-CCC-hHHHHHHHHHHHHCCCEEEEEECChh
Confidence 3334454 654 56899999999999998887766543
No 150
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=20.93 E-value=78 Score=30.39 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=23.7
Q ss_pred EEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
|+-.|| |-.|.++|+..++.|++++|+=..
T Consensus 8 VvIIGg--Gi~Gl~~A~~La~~G~~V~lle~~ 37 (382)
T 1y56_B 8 IVVIGG--GIVGVTIAHELAKRGEEVTVIEKR 37 (382)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 444565 779999999999999997776443
No 151
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=20.92 E-value=4.5e+02 Score=23.66 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 140 g~~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
|+.-|| +|++ |--|.++|..-++.|.++++...
T Consensus 4 ~k~vlV-TGas-~gIG~aia~~l~~~G~~vv~~~~ 36 (258)
T 3oid_A 4 NKCALV-TGSS-RGVGKAAAIRLAENGYNIVINYA 36 (258)
T ss_dssp CCEEEE-SSCS-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEE-ecCC-chHHHHHHHHHHHCCCEEEEEcC
Confidence 433444 4654 56899999999999998887543
No 152
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.79 E-value=1.2e+02 Score=27.66 Aligned_cols=43 Identities=7% Similarity=-0.057 Sum_probs=30.6
Q ss_pred HHHHHHHhHHcCCCCCCEEEEecCCchhHHHHHHHHHhcCC-CCeEEEEec
Q 012606 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 328 (460)
Q Consensus 279 ~~~Ei~eq~~~~~~~pD~vvv~vGtGgt~~Gl~~~~~~~g~-~~~vigVe~ 328 (460)
...++++. . +.||.||+... . +.|+..++++.|. ++.|+|+.-
T Consensus 190 ~~~~~l~~---~-~~~~ai~~~~d--~-a~g~~~al~~~g~~di~vig~d~ 233 (304)
T 3gbv_A 190 MLDDFFRE---H-PDVKHGITFNS--K-VYIIGEYLQQRRKSDFSLIGYDL 233 (304)
T ss_dssp HHHHHHHH---C-TTCCEEEESSS--C-THHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHh---C-CCeEEEEEcCc--c-hHHHHHHHHHcCCCCcEEEEeCC
Confidence 34555544 2 57899887553 3 6799999999885 788888764
No 153
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=20.73 E-value=2e+02 Score=27.80 Aligned_cols=85 Identities=11% Similarity=-0.055 Sum_probs=49.2
Q ss_pred ceEEEEeC-CCCCCCCchhHHHhHHhhHHHHHhcCC-C--eEEEeCCc-cchHHHHHHHHHHHhCCeEEEEecCCCCccc
Q 012606 107 RCFYVVRD-DLLHPLVNGNKARKMDALLPLLEDHIV-T--DLVTCGGC-QSAHATAVAVSCAERGLKSHLLLRGEQPQIL 181 (460)
Q Consensus 107 ~~l~lKrE-dln~p~~GsnK~Rkl~~~l~~a~~~g~-~--~VVt~Gas-~GNhg~AlA~aaa~~Gl~~~iv~p~~~~~~~ 181 (460)
+.|.==.+ |..|| + -.+.-++.--+..|. + +|...|-. .||.+.+++.+++++|++++++.|+.-...+
T Consensus 123 vPVINag~g~~~HP-t-----Q~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~ 196 (308)
T 1ml4_A 123 VPVINAGDGSNQHP-T-----QTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPR 196 (308)
T ss_dssp SCEEEEEETTSCCH-H-----HHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCH
T ss_pred CCEEeCccCCccCc-H-----HHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCH
Confidence 34444344 67788 3 223222222244453 2 45556654 3799999999999999999999997542111
Q ss_pred hhhhHHHHhCCc-EEEeC
Q 012606 182 TGYNLISTIYGK-VTYVP 198 (460)
Q Consensus 182 ~~~~~~~~~~Ga-V~~v~ 198 (460)
.....++..|. +..+.
T Consensus 197 -~~~~~~~~~g~~~~~~~ 213 (308)
T 1ml4_A 197 -HIVEELREKGMKVVETT 213 (308)
T ss_dssp -HHHHHHHHTTCCEEEES
T ss_pred -HHHHHHHHcCCeEEEEc
Confidence 11123455676 65543
No 154
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=20.66 E-value=93 Score=30.18 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHh--CCeEEEEec
Q 012606 144 LVTCGGCQSAHATAVAVSCAER--GLKSHLLLR 174 (460)
Q Consensus 144 VVt~Gas~GNhg~AlA~aaa~~--Gl~~~iv~p 174 (460)
|+..|| |=.|.++|...++. |++++|+=.
T Consensus 3 V~IVGa--G~aGl~~A~~L~~~~~G~~V~v~E~ 33 (381)
T 3c4a_A 3 ILVIGA--GPAGLVFASQLKQARPLWAIDIVEK 33 (381)
T ss_dssp EEEECC--SHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred EEEECC--CHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 555566 67999999999999 999888743
No 155
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=20.59 E-value=72 Score=34.28 Aligned_cols=34 Identities=18% Similarity=0.036 Sum_probs=23.5
Q ss_pred EEEEecCCchhHHHHHHHHHhcCCCCeEEEEecc
Q 012606 296 KFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALV 329 (460)
Q Consensus 296 ~vvv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~ 329 (460)
.++|++|+|-+..-...+.+..+..++|++||..
T Consensus 361 VldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 361 LMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp EEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred EEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3445666666655566666666777899999974
No 156
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=20.56 E-value=90 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.1
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecC
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~ 175 (460)
..|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 27 ~dV~IVGa--G~aGl~~A~~L~~~G~~v~v~E~~ 58 (398)
T 2xdo_A 27 KNVAIIGG--GPVGLTMAKLLQQNGIDVSVYERD 58 (398)
T ss_dssp CEEEEECC--SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCEEEECC--CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45666676 679999999999999999988654
No 157
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=20.45 E-value=96 Score=30.39 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=22.9
Q ss_pred eEEEeCCccchHHHHHHHHHHHhCCeEEEE
Q 012606 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (460)
Q Consensus 143 ~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv 172 (460)
+||-.|| |-.|.+.|+..++.|++++|+
T Consensus 2 dVvVIGa--GiaGLsaA~~La~~G~~V~vl 29 (421)
T 3nrn_A 2 RAVVVGA--GLGGLLAGAFLARNGHEIIVL 29 (421)
T ss_dssp EEEEESC--SHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEECC--CHHHHHHHHHHHHCCCeEEEE
Confidence 3555576 779999999999999998776
No 158
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.24 E-value=1.4e+02 Score=27.19 Aligned_cols=35 Identities=9% Similarity=-0.112 Sum_probs=27.9
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC-CCeEEEEec
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 328 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~-~~~vigVe~ 328 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|.+-
T Consensus 182 ~~~~ai~~--~nD~~A~g~~~al~~~G~~di~viG~D~ 217 (283)
T 2ioy_A 182 PKIDAVFA--QNDEMALGAIKAIEAANRQGIIVVGFDG 217 (283)
T ss_dssp SCCCEEEE--SSHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CCccEEEE--CCchHHHHHHHHHHHCCCCCcEEEEeCC
Confidence 46898876 345688999999998886 788998864
No 159
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=20.23 E-value=2.8e+02 Score=27.15 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=43.1
Q ss_pred ceEEEEeCCCCCCCCchhHHHhHHhhHHHHHhcC-C---CeEEEeCCccchHHHHHHHHHHHhCCeEEEEecCCC
Q 012606 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-V---TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (460)
Q Consensus 107 ~~l~lKrEdln~p~~GsnK~Rkl~~~l~~a~~~g-~---~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p~~~ 177 (460)
+.|+==..|..|| + -.+.-++.--+..| . .+|...|-..+|.+.+++.+++++|++++++.|..-
T Consensus 123 vPVINa~~~~~HP-t-----Q~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~ 191 (335)
T 1dxh_A 123 VPVFNGLTDEYHP-T-----QMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKAL 191 (335)
T ss_dssp SCEEEEECSSCCH-H-----HHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred CCEEcCCCCCCCc-H-----HHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCccc
Confidence 3444445677788 3 22332333224455 2 345557764479999999999999999999999753
No 160
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=20.14 E-value=1.8e+02 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC----CCeEEEEecc
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIALV 329 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~----~~~vigVe~~ 329 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|+.-.
T Consensus 187 ~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig~d~~ 226 (288)
T 3gv0_A 187 DRPDGIVS--ISGSSTIALVAGFEAAGVKIGEDVDIVSKQSA 226 (288)
T ss_dssp SCCSEEEE--SCHHHHHHHHHHHHTTTCCTTTSCEEEEEESS
T ss_pred CCCcEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEEEecCh
Confidence 57899885 456788999999998874 5789998753
No 161
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=20.07 E-value=6.7e+02 Score=25.88 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=24.9
Q ss_pred EEecCCchhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 012606 298 VVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (460)
Q Consensus 298 vv~vGtGgt~~Gl~~~~~~~g~~~~vigVe~~g~~ 332 (460)
|+++++|-+..|++.+.+.+| ++++.|.|...+
T Consensus 82 VV~aSsGNhg~avA~aa~~lG--i~~~IvmP~~~p 114 (514)
T 1tdj_A 82 VITASAGNHAQGVAFSSARLG--VKALIVMPTATA 114 (514)
T ss_dssp CEEEECSSSHHHHHHHHHHTT--CCEEEECCSSCC
T ss_pred EEEECCcHHHHHHHHHHHHcC--CcEEEEECCCCC
Confidence 455667999999999988766 566777887654
No 162
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=20.06 E-value=1.2e+02 Score=28.39 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=24.9
Q ss_pred CeEEEeCCccchHHHHHHHHHHHhCCeEEEEec
Q 012606 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (460)
Q Consensus 142 ~~VVt~Gas~GNhg~AlA~aaa~~Gl~~~iv~p 174 (460)
++|...|+ |+-|.++|..++..|++++++-+
T Consensus 5 ~kV~VIGa--G~mG~~iA~~la~~G~~V~l~d~ 35 (283)
T 4e12_A 5 TNVTVLGT--GVLGSQIAFQTAFHGFAVTAYDI 35 (283)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEeC
Confidence 45555675 89999999999999998877643
No 163
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=20.05 E-value=1.3e+02 Score=27.33 Aligned_cols=37 Identities=14% Similarity=-0.026 Sum_probs=28.3
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhcCC--CCeEEEEeccC
Q 012606 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL--PWEVTAIALVD 330 (460)
Q Consensus 292 ~~pD~vvv~vGtGgt~~Gl~~~~~~~g~--~~~vigVe~~g 330 (460)
+.||.||+ .+...+.|+..++++.|. ++.|+|+.-..
T Consensus 189 ~~~~ai~~--~~d~~a~g~~~al~~~G~~~di~vvg~d~~~ 227 (289)
T 3brs_A 189 PDISVMVG--LNQYSATGAARAIKDMSLEAKVKLVCIDSSM 227 (289)
T ss_dssp TTEEEEEE--SSHHHHHHHHHHHHHTTCTTTSEEEEEESCS
T ss_pred CCceEEEE--CCCcchHHHHHHHHhcCCCCCEEEEEECCCH
Confidence 46888876 456788999999998876 48899887533
Done!