Query 012611
Match_columns 460
No_of_seqs 343 out of 1546
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 5.7E-57 1.9E-61 455.2 18.5 265 76-343 33-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 3.9E-56 1.3E-60 443.2 22.1 263 78-343 26-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 5.7E-47 2E-51 392.8 24.5 241 78-324 8-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 2.3E-47 8E-52 384.3 19.7 237 71-323 45-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 2.4E-46 8.2E-51 365.2 18.3 229 78-322 4-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.2 7.9E-12 2.7E-16 121.8 5.9 137 154-312 7-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 2.2E-10 7.4E-15 113.5 4.0 133 158-312 30-163 (290)
8 1wgl_A TOLL-interacting protei 66.9 6.6 0.00023 29.0 4.1 39 83-129 10-48 (59)
9 2dam_A ETEA protein; KIAA0887, 64.6 17 0.00058 27.3 6.2 42 79-128 15-56 (67)
10 2dhy_A CUE domain-containing p 63.3 9.7 0.00033 28.8 4.6 42 81-130 17-58 (67)
11 2dal_A Protein KIAA0794; FAS a 55.7 26 0.00088 25.8 5.7 40 79-127 12-51 (62)
12 1v92_A NSFL1 cofactor P47; 3-h 55.3 21 0.0007 24.2 4.8 37 82-127 5-41 (46)
13 2dah_A Ubiquilin-3; UBA domain 43.5 51 0.0017 23.6 5.5 38 84-130 11-48 (54)
14 1otr_A Protein CUE2; protein-p 40.4 42 0.0014 23.7 4.5 39 84-130 6-44 (49)
15 1wr1_B Ubiquitin-like protein 39.9 48 0.0017 24.1 4.9 38 83-129 18-55 (58)
16 1ufz_A Hypothetical protein BA 39.0 52 0.0018 25.9 5.2 41 83-130 35-75 (83)
17 3e21_A HFAF1, FAS-associated f 38.7 64 0.0022 22.3 5.1 36 82-125 5-40 (45)
18 2di0_A Activating signal coint 37.2 76 0.0026 24.2 5.8 45 77-129 8-52 (71)
19 2dna_A Unnamed protein product 37.0 69 0.0024 24.1 5.5 38 83-129 20-57 (67)
20 3e3v_A Regulatory protein RECX 36.3 25 0.00085 31.3 3.5 74 52-129 87-162 (177)
21 1z96_A DNA-damage, UBA-domain 35.6 51 0.0018 21.3 4.2 21 107-127 19-39 (40)
22 1vej_A Riken cDNA 4931431F19; 35.1 64 0.0022 24.8 5.1 38 83-129 30-67 (74)
23 2dzl_A Protein FAM100B; UBA-li 27.1 1.3E+02 0.0043 22.4 5.5 35 84-127 19-53 (66)
24 2kvs_A Uncharacterized protein 25.2 1.7E+02 0.006 22.7 6.1 47 84-131 20-66 (80)
25 2bwb_A Ubiquitin-like protein 24.7 75 0.0026 21.8 3.6 25 104-128 20-44 (46)
26 1j3a_A 50S ribosomal protein L 23.5 51 0.0017 28.5 3.1 46 226-303 2-47 (142)
27 3dfg_A Xcrecx, regulatory prot 23.2 50 0.0017 28.8 3.1 72 52-128 85-157 (162)
28 2knz_A Ubiquilin-4; cytoplasm, 23.0 68 0.0023 22.7 3.2 23 107-129 27-49 (53)
29 2cwb_A Chimera of immunoglobul 22.8 89 0.003 25.7 4.3 26 104-129 79-104 (108)
30 1vq8_J 50S ribosomal protein L 22.4 55 0.0019 28.4 3.1 47 226-304 10-56 (145)
31 1q02_A Sequestosome 1; helical 21.3 80 0.0027 22.6 3.1 22 107-128 27-48 (52)
32 2oo3_A Protein involved in cat 21.0 46 0.0016 32.1 2.5 30 257-286 233-262 (283)
33 2ka5_A Putative anti-sigma fac 20.9 2.5E+02 0.0085 22.6 6.9 51 224-280 53-103 (125)
34 4dgh_A Sulfate permease family 20.4 3.3E+02 0.011 21.9 7.6 51 223-279 49-99 (130)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=5.7e-57 Score=455.20 Aligned_cols=265 Identities=36% Similarity=0.666 Sum_probs=242.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCcccccchh------
Q 012611 76 DVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFS------ 149 (460)
Q Consensus 76 d~~~~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRk~~~~d~i~~d~~~~------ 149 (460)
.-.+++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||+++++||++++++.+..++.++
T Consensus 33 ~~lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~ 110 (320)
T 3q8g_A 33 GNLTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDK 110 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchh
Confidence 3457889999999999999988 4567777 5999999999999999999999999999999999887765544
Q ss_pred HHHHHHhhcccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEe
Q 012611 150 EVNEVLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILD 229 (460)
Q Consensus 150 el~~vlk~~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD 229 (460)
+...+.++++.+++|+|++||||+|+++|++|++++.+.++.+++++++++.+|.+++.++++|+...+..++++++|+|
T Consensus 111 e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD 190 (320)
T 3q8g_A 111 ERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLD 190 (320)
T ss_dssp HHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred HHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEE
Confidence 44567788999999999999999999999999998877778999999999999999988888888777778999999999
Q ss_pred CCCCCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHHhhcCC
Q 012611 230 VQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDA 309 (460)
Q Consensus 230 ~~G~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~ 309 (460)
++|++++++++. +.+++.+++++|++||+||+++||||+|++|+++|++|||||+++|++||+|+++++.++|.++||+
T Consensus 191 ~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~ 269 (320)
T 3q8g_A 191 LKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPI 269 (320)
T ss_dssp CTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCG
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCCh
Confidence 999999998753 7889999999999999999999999999999999999999999999999999998888899999999
Q ss_pred CCCccccCCCCCCCC-CCCCcCCCCCCCCChhHHH
Q 012611 310 SELPEFLGGSCNCAD-QGGCMRSDKGPWKDPNILQ 343 (460)
Q Consensus 310 ~~LP~eyGGt~~~~~-~ggc~~~~~~pw~dp~~~k 343 (460)
++||++|||+++|.+ +|||+.++.|||+||++++
T Consensus 270 ~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 270 ENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp GGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred hhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 999999999999976 6999999999999999876
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=3.9e-56 Score=443.20 Aligned_cols=263 Identities=40% Similarity=0.721 Sum_probs=241.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCcccccchhHHHHHHhh
Q 012611 78 RNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQY 157 (460)
Q Consensus 78 ~~~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRk~~~~d~i~~d~~~~el~~vlk~ 157 (460)
.+++|+++|++||+||.+++ ++...|| .+||||||||+||+++|++||+++++||++++++.+..++.+.+...+.++
T Consensus 26 l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~ 103 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKF 103 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHh
Confidence 36678899999999999888 4667787 599999999999999999999999999999998888766554444556778
Q ss_pred cccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEeCCCCCccC
Q 012611 158 YPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKS 237 (460)
Q Consensus 158 ~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD~~G~sl~~ 237 (460)
++++++|+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++.++++|+...+.+++++++|+|++|++++|
T Consensus 104 ~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~ 183 (296)
T 1aua_A 104 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 183 (296)
T ss_dssp SCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHH
T ss_pred CCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHH
Confidence 89999999999999999999999999888778999999999999999998888888877777899999999999999999
Q ss_pred CChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHHhhcCCCCCccccC
Q 012611 238 LTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLG 317 (460)
Q Consensus 238 ~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~~~LP~eyG 317 (460)
++.. +.+++.+++++|+|||+||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++||+++||++||
T Consensus 184 ~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yG 262 (296)
T 1aua_A 184 AYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262 (296)
T ss_dssp HHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGT
T ss_pred HHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhC
Confidence 8754 789999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred CCCCCCC-CCCCcCCCCCCCCChhHHH
Q 012611 318 GSCNCAD-QGGCMRSDKGPWKDPNILQ 343 (460)
Q Consensus 318 Gt~~~~~-~ggc~~~~~~pw~dp~~~k 343 (460)
|+++|.+ +|||+.++.|||++|++++
T Consensus 263 G~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 263 GKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred CCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 9999986 5899999999999999875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=5.7e-47 Score=392.83 Aligned_cols=241 Identities=30% Similarity=0.470 Sum_probs=214.8
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCcccccchhHHHHHHh
Q 012611 78 RNVEELHAVDAFRRVLISE-ELLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVLQ 156 (460)
Q Consensus 78 ~~~~E~~~V~~lR~~L~~~-~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRk~~~~d~i~~d~~~~el~~vlk 156 (460)
.+++|+++|++||+||.++ +++| ..|| .+||||||||+||+++|.+||+++++||++++++.+... ..++ .+.+
T Consensus 8 l~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~--~~~~ 82 (403)
T 1olm_A 8 LSPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPPE--VIQQ 82 (403)
T ss_dssp CCHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCCH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCHH--HHHH
Confidence 4788999999999999887 4566 4677 589999999999999999999999999999998887653 2232 3556
Q ss_pred hcccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEeCCCCCcc
Q 012611 157 YYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFK 236 (460)
Q Consensus 157 ~~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD~~G~sl~ 236 (460)
+++.+++|+|++||||+|+++|++|++++++..+.+++++++++++|.+++.+. .++...+.+++++++|+|++|++++
T Consensus 83 ~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~D~~g~sl~ 161 (403)
T 1olm_A 83 YLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIYDCEGLGLK 161 (403)
T ss_dssp HCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEEECTTCCGG
T ss_pred hCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEEECCCCCHH
Confidence 778889999999999999999999999877778999999999999999988643 2333345578999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHHhhcCCCCCcccc
Q 012611 237 SLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFL 316 (460)
Q Consensus 237 ~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~~~LP~ey 316 (460)
+++++.+++++.+++++|+|||+||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++||+++||++|
T Consensus 162 ~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~y 241 (403)
T 1olm_A 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY 241 (403)
T ss_dssp GGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGG
T ss_pred HHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhh
Confidence 99888889999999999999999999999999999999999999999999999999999988878999999999999999
Q ss_pred CCCCCCCC
Q 012611 317 GGSCNCAD 324 (460)
Q Consensus 317 GGt~~~~~ 324 (460)
||++++++
T Consensus 242 GG~~~~~~ 249 (403)
T 1olm_A 242 GGTMTDPD 249 (403)
T ss_dssp TSSBCCTT
T ss_pred CCCcCCCC
Confidence 99998864
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.3e-47 Score=384.30 Aligned_cols=237 Identities=20% Similarity=0.341 Sum_probs=199.8
Q ss_pred cccccCCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 012611 71 PVSIEDVRNVEE--LHAVDAFRRVLISEELLP-----------ARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDF 137 (460)
Q Consensus 71 ~~~ied~~~~~E--~~~V~~lR~~L~~~~~LP-----------~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRk~~ 137 (460)
..+.+++++.++ +++|++||+||.++||+| .++|| .+||||||||+||+++|++||.+|++||+++
T Consensus 45 ~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~ 123 (316)
T 3hx3_A 45 QKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQY 123 (316)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 345677776554 789999999999999975 45677 5999999999999999999999999999999
Q ss_pred CCCCcccccchhHHHHHHhh-cccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhh
Q 012611 138 GTDTILEDFEFSEVNEVLQY-YPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIA 216 (460)
Q Consensus 138 ~~d~i~~d~~~~el~~vlk~-~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~ 216 (460)
+. +..++.++++..+++. ++.+++|+|++||||+|+++|++|++++ +.+++++++++++|.++..
T Consensus 124 ~~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~-------- 189 (316)
T 3hx3_A 124 PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLEN-------- 189 (316)
T ss_dssp GG--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS--------
T ss_pred ch--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc--------
Confidence 84 3344555666665554 4577899999999999999999999874 7899999999999998752
Q ss_pred hhCCcCceEEEEeCCCCCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcC
Q 012611 217 AKRHIDSSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLG 296 (460)
Q Consensus 217 ~~~~i~~~tiIiD~~G~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~ 296 (460)
...++.|+++|+|++|++++|+.+.....++.+++++|++||+||+++||||+|++|+++|+++||||+++|++||+|++
T Consensus 190 ~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~ 269 (316)
T 3hx3_A 190 EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269 (316)
T ss_dssp HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC
Confidence 24567899999999999999876555788999999999999999999999999999999999999999999999999998
Q ss_pred CcchHHHHhhcCCCCCccccCCCCCCC
Q 012611 297 NKYQSKLLEIIDASELPEFLGGSCNCA 323 (460)
Q Consensus 297 ~~~~~~L~e~Id~~~LP~eyGGt~~~~ 323 (460)
+++ ++|.++||+++||++|||++++.
T Consensus 270 ~~~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 270 DDL-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp TCC-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred CCH-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 765 79999999999999999999863
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.4e-46 Score=365.16 Aligned_cols=229 Identities=24% Similarity=0.359 Sum_probs=195.4
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCcccccchhHHHHHH
Q 012611 78 RNVEELHAVDAFRRVLISEE--LLPARHDHYHMLLRFLKARKFDIAKATQMWADMIQWRKDFGTDTILEDFEFSEVNEVL 155 (460)
Q Consensus 78 ~~~~E~~~V~~lR~~L~~~~--~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRk~~~~d~i~~d~~~~el~~vl 155 (460)
+++.|+++|++||+++.+++ ++|...|| .+|+||||||+||+++|.+||.++++||++++. +..++.+.++...+
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 35677899999999998775 56777888 599999999999999999999999999999863 32333444554444
Q ss_pred hh-cccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEeCCCCC
Q 012611 156 QY-YPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVG 234 (460)
Q Consensus 156 k~-~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD~~G~s 234 (460)
+. +..+++|+|++||||+|+++|++|++.+ +..++++++++++|.++.. ...++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCC
Confidence 44 4567899999999999999999999874 6889999999999987653 123467999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHHhhcCCCCCcc
Q 012611 235 FKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASELPE 314 (460)
Q Consensus 235 l~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~~~LP~ 314 (460)
++|+.+..+++++.+++++|++||+||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99987666789999999999999999999999999999999999999999999999999999888899999999 99999
Q ss_pred ccCCCCCC
Q 012611 315 FLGGSCNC 322 (460)
Q Consensus 315 eyGGt~~~ 322 (460)
+|||++..
T Consensus 228 ~yGG~~~~ 235 (262)
T 1r5l_A 228 EYGGEEFS 235 (262)
T ss_dssp GGTCSSCC
T ss_pred hhCCCCCC
Confidence 99999854
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.21 E-value=7.9e-12 Score=121.83 Aligned_cols=137 Identities=12% Similarity=0.146 Sum_probs=112.1
Q ss_pred HHhhcccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEeCCCC
Q 012611 154 VLQYYPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGV 233 (460)
Q Consensus 154 vlk~~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD~~G~ 233 (460)
+.+....+..|.|++||||+++.+.+++...+ +++.++.|++..++.++. ..+++|+|+.|+
T Consensus 7 i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~ 68 (256)
T 3pg7_A 7 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHT 68 (256)
T ss_dssp HHHHTSEEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTC
T ss_pred HHHcCCEEEcCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCC
Confidence 33444455568999999999999999998653 688888888777765443 579999999999
Q ss_pred CccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHH-HhhccChhhhcceEEcCCcchHHHHhhcCCCCC
Q 012611 234 GFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNS-VRRFLDPKTTSKIHVLGNKYQSKLLEIIDASEL 312 (460)
Q Consensus 234 sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~i-vKpFLd~kt~~KI~~l~~~~~~~L~e~Id~~~L 312 (460)
+..+.+. .+.++.+..++...|...|+++||+|++++|+..|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 69 ~~~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 69 GPSNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp CGGGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred CcccCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 9876553 6789999999999999999999999999999977665 566666688899999976 5889999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=113.47 Aligned_cols=133 Identities=13% Similarity=0.149 Sum_probs=100.0
Q ss_pred cccccccCCCCCCcEEEEecCccCCccccccccHHHHHHHHHHHHHHHHHhhcchhhhhhhCCcCceEEEEeCCCCCccC
Q 012611 158 YPQGYHGMDKEGRPVYIERLGKVDPNKLTQVTTMDRYLRYHVQEFEKCFAIKFPACSIAAKRHIDSSTTILDVQGVGFKS 237 (460)
Q Consensus 158 ~~~~~~G~Dk~GRPVli~rlg~~d~~~l~~~~s~~~~ir~~v~~lE~~~~~~~pa~s~~~~~~i~~~tiIiD~~G~sl~~ 237 (460)
...+..|.|++||||+++.+++++...+ +++.++-|++..++.++. ..+++|+|+.|++..+
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~~--------------~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSN 91 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGG
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEEcCCCCccC
Confidence 3444458899999999999999997653 688887777766665442 5899999999999876
Q ss_pred CChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHH-HHHhhccChhhhcceEEcCCcchHHHHhhcCCCCC
Q 012611 238 LTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLW-NSVRRFLDPKTTSKIHVLGNKYQSKLLEIIDASEL 312 (460)
Q Consensus 238 ~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw-~ivKpFLd~kt~~KI~~l~~~~~~~L~e~Id~~~L 312 (460)
-.. .++++.+..++...|+..|+++||+|++++|+..+ ...++|...+..+|+.+++.- ..|.++++++++
T Consensus 92 ~p~--~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 92 RFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp CCC--HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred CCh--HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 543 68899999999999999999999999999998744 567788888888999998653 458889988764
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=66.88 E-value=6.6 Score=28.96 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 012611 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 83 ~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~ 129 (460)
++.|++|++.. | ..|. ..+-.-|++++.|++.|+.+|.+
T Consensus 10 ee~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 36677777764 3 3455 47899999999999999999865
No 9
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.62 E-value=17 Score=27.31 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 012611 79 NVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWA 128 (460)
Q Consensus 79 ~~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~ 128 (460)
..++.+.|.+|...-- ..|......||...+||++.|...+-
T Consensus 15 s~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5567788999988762 12345788999999999999987764
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.27 E-value=9.7 Score=28.83 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 012611 81 EELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (460)
Q Consensus 81 ~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 130 (460)
+..+++++|++.. | ..|. ..+..-|+++++|++.|++.|.++
T Consensus 17 ~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4467888888875 3 3454 578899999999999999988764
No 11
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.72 E-value=26 Score=25.81 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012611 79 NVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMW 127 (460)
Q Consensus 79 ~~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L 127 (460)
...+.+.|.+|...-. .+. .....||.+.+||++.|...+
T Consensus 12 s~~~~e~i~qF~~iTg--------~~~-~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------ASE-SVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CCH-HHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 4456678888886541 123 468899999999999998766
No 12
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=55.26 E-value=21 Score=24.23 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012611 82 ELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMW 127 (460)
Q Consensus 82 E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L 127 (460)
+.+.|.+|...- . .+. .....||.+++||++.|...+
T Consensus 5 ~~~~i~~F~~iT-------g-~~~-~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT-------G-AEE-DRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT-------C-CCH-HHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh-------C-cCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 456788887653 1 123 578999999999999998765
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.49 E-value=51 Score=23.58 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 012611 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (460)
Q Consensus 84 ~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 130 (460)
+.|++|++.= ++|.+..++-|++.++|+++|.+.|..+
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666542 3443456899999999999999888654
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=40.38 E-value=42 Score=23.67 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 012611 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (460)
Q Consensus 84 ~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 130 (460)
..++.|.+.. |.. +- ..+-+-|+++++|++.|.++|.+.
T Consensus 6 ~~v~~L~EMF------P~~-~~-~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMF------PAI-SK-SKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHC------SSS-CH-HHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHC------CCC-CH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4555554443 433 33 468899999999999999998765
No 15
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.93 E-value=48 Score=24.11 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 012611 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 83 ~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~ 129 (460)
.+.|++|++. . ..|.+..++-|++.++|+++|.+.|..
T Consensus 18 ~~qi~~L~~M----G-----F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM----G-----FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH----T-----CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc----C-----CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456666553 2 233346799999999999999988764
No 16
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=38.97 E-value=52 Score=25.89 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 012611 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADM 130 (460)
Q Consensus 83 ~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 130 (460)
...++++|..|- +...| ..|.+-.-..+||+++|...+.+-
T Consensus 35 ~SCLd~iR~VlG------dsV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLG------DAVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTT------TTSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------ccCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 467888888872 23445 468889999999999999887653
No 17
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=38.71 E-value=64 Score=22.31 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHH
Q 012611 82 ELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQ 125 (460)
Q Consensus 82 E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k 125 (460)
..+.|++|.+.- ..+|......||.+.+||++.|..
T Consensus 5 ~de~ia~F~~iT--------G~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 5 REMILADFQACT--------GIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHH--------CCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHcCCcHHHHHH
Confidence 457888888754 124434578899999999999864
No 18
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.22 E-value=76 Score=24.19 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 012611 77 VRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 77 ~~~~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~ 129 (460)
+..++-...|.++++.+ |. ..+ .++.+.|..++.|+|.+...|-+
T Consensus 8 ~~~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 33445567888888776 43 345 37999999999999999888754
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.97 E-value=69 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 012611 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 83 ~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~ 129 (460)
..+|++|++.= +.|.+.-++-|++.+.|+++|++.|..
T Consensus 20 ~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 44666665532 344355699999999999999887754
No 20
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=36.25 E-value=25 Score=31.34 Aligned_cols=74 Identities=7% Similarity=0.027 Sum_probs=39.8
Q ss_pred ccccchhhccCCCcccccc-cccccCCCCHHHHHHHHHH-HHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 012611 52 SKLKPSFKKKSRRKSVERV-PVSIEDVRNVEELHAVDAF-RRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 52 ~~~~~~~~k~~~r~~~~~~-~~~ied~~~~~E~~~V~~l-R~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~ 129 (460)
.++++-|+.||- ...+ .-+++++.++++.+...++ +..+......+ ......-+.+||..++|+.+.+...+..
T Consensus 87 ~~I~~eL~~KGI---~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 87 KVIKLNLSKKGI---DDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHTTTC---CHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 346667777764 2222 3445555434443333333 33332221111 0111246889999999999988877765
No 21
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=35.58 E-value=51 Score=21.32 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q 012611 107 HMLLRFLKARKFDIAKATQMW 127 (460)
Q Consensus 107 ~~LLRFLrArkfDvekA~k~L 127 (460)
+...+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356889999999999998754
No 22
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.09 E-value=64 Score=24.75 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 012611 83 LHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 83 ~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~ 129 (460)
.+.|++|++.= +.|.+..++-|++.++|+++|.+.|..
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45666666542 233346799999999999999988753
No 23
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.07 E-value=1.3e+02 Score=22.36 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012611 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMW 127 (460)
Q Consensus 84 ~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L 127 (460)
+.|.+|...-. .++ .....||.+.+||++.|...+
T Consensus 19 ~~i~qF~~iTg--------~~~-~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAG--------CAA-DQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHC--------CCH-HHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcC--------CCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 67888876541 133 468899999999999998766
No 24
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=25.19 E-value=1.7e+02 Score=22.70 Aligned_cols=47 Identities=6% Similarity=0.113 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 012611 84 HAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWADMI 131 (460)
Q Consensus 84 ~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~~~l 131 (460)
.-+.+|-+++..+...|...+|++.|.+||....++.+. .+.+++.+
T Consensus 20 dp~g~LA~~i~~D~~FPK~~~d~~eIs~Yle~~~~~~~~-~e~vkral 66 (80)
T 2kvs_A 20 TPFGILAEHVSEDKAFPRLEERHQVIRAYVMSNYTDHQL-IETTNRAI 66 (80)
T ss_dssp CHHHHHHHHHHTSCCCCSSCSSSHHHHHHHHHHCCCHHH-HHHHHHHH
T ss_pred ChHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 567888899988888999989999999999998877554 44444443
No 25
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.75 E-value=75 Score=21.82 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHH
Q 012611 104 DHYHMLLRFLKARKFDIAKATQMWA 128 (460)
Q Consensus 104 dD~~~LLRFLrArkfDvekA~k~L~ 128 (460)
.|.+..++-|++.++|+++|.+.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3334578999999999999988764
No 26
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=23.45 E-value=51 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=31.0
Q ss_pred EEEeCCCCCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHH
Q 012611 226 TILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKL 303 (460)
Q Consensus 226 iIiD~~G~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L 303 (460)
+|||.+|..+..+. ..+.+++. .=..|.|||+ +||.|-|+++...+
T Consensus 2 ~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~ 47 (142)
T 1j3a_A 2 RIINADGLILGRLA-------SRVAKMLL-----EGEEVVIVNA--------------------EKAVITGNREVIFS 47 (142)
T ss_dssp EEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------eeeEecccHHhhee
Confidence 58899998875443 22222222 4567999998 78999998765544
No 27
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=23.20 E-value=50 Score=28.82 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=37.9
Q ss_pred ccccchhhccCCCcccccc-cccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 012611 52 SKLKPSFKKKSRRKSVERV-PVSIEDVRNVEELHAVDAFRRVLISEELLPARHDHYHMLLRFLKARKFDIAKATQMWA 128 (460)
Q Consensus 52 ~~~~~~~~k~~~r~~~~~~-~~~ied~~~~~E~~~V~~lR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~L~ 128 (460)
.++++-|+.||- ...+ .-.++++.+++...+.+.++..+.. ..+.......-+.+||..++|+.+.+...|.
T Consensus 85 ~~I~~eL~~KGI---~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 85 LHIRAELGTHGL---DSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp HHHHHHHHHTTC---CHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 456777777774 2222 3445555332222233333333311 1121111224688999999999998876653
No 28
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=22.95 E-value=68 Score=22.66 Aligned_cols=23 Identities=26% Similarity=0.085 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 012611 107 HMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 107 ~~LLRFLrArkfDvekA~k~L~~ 129 (460)
+..++-|+++++|+++|.+.|..
T Consensus 27 ~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 27 EANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 56789999999999999988754
No 29
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=22.81 E-value=89 Score=25.75 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHH
Q 012611 104 DHYHMLLRFLKARKFDIAKATQMWAD 129 (460)
Q Consensus 104 dD~~~LLRFLrArkfDvekA~k~L~~ 129 (460)
.|.+..++-|++.++|+++|++.|.+
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34346899999999999999998864
No 30
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=22.44 E-value=55 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=31.6
Q ss_pred EEEeCCCCCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHHhhccChhhhcceEEcCCcchHHHH
Q 012611 226 TILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSVRRFLDPKTTSKIHVLGNKYQSKLL 304 (460)
Q Consensus 226 iIiD~~G~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~ivKpFLd~kt~~KI~~l~~~~~~~L~ 304 (460)
+|||.+|..+..+. ..+.++|. .=..|.|||+ +||.|.|+++...+.
T Consensus 10 ~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~y 56 (145)
T 1vq8_J 10 VIVDARDCIMGRVA-------SQVAEQAL-----DGETVAVVNA--------------------ERAVITGREEQIVEK 56 (145)
T ss_dssp EEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHHH
T ss_pred EEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------EeeEecchhhhheee
Confidence 58899998875443 22233333 4567999998 789999987655543
No 31
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.27 E-value=80 Score=22.58 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 012611 107 HMLLRFLKARKFDIAKATQMWA 128 (460)
Q Consensus 107 ~~LLRFLrArkfDvekA~k~L~ 128 (460)
.+|-|.|.+.++|+.+|.+.|.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 4899999999999999998764
No 32
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=20.97 E-value=46 Score=32.14 Aligned_cols=30 Identities=27% Similarity=0.205 Sum_probs=21.9
Q ss_pred CCcccceEEEEecChHHHHHHHHHhhccCh
Q 012611 257 YPETLCRMFIINAGQGFKLLWNSVRRFLDP 286 (460)
Q Consensus 257 YPerL~~i~IINaP~~f~~lw~ivKpFLd~ 286 (460)
+.-.=..|+|||+||.+.-...-+-|+|.+
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~ 262 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTT 262 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHH
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHH
Confidence 334445799999999998777766666544
No 33
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.95 E-value=2.5e+02 Score=22.61 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=36.9
Q ss_pred eEEEEeCCCCCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHHH
Q 012611 224 STTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNSV 280 (460)
Q Consensus 224 ~tiIiD~~G~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iv 280 (460)
-.+|+|+++++. ++...+..+..+.+.++. +=..+.++|++.-+.-++.+.
T Consensus 53 ~~vvlDls~V~~--iDSsGl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 53 NKIFLVLSDVES--IDSFSLGVIVNILKSISS----SGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp CEEEEECTTCSC--CCHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCE--EcHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHc
Confidence 468999999986 454456666666665553 347899999998887777654
No 34
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=20.43 E-value=3.3e+02 Score=21.88 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=37.1
Q ss_pred ceEEEEeCCCCCccCCChHHHHHHHHHHHHhhhcCCcccceEEEEecChHHHHHHHH
Q 012611 223 SSTTILDVQGVGFKSLTKSARELIMQVQKIDSDNYPETLCRMFIINAGQGFKLLWNS 279 (460)
Q Consensus 223 ~~tiIiD~~G~sl~~~~~~~~~~ik~i~~ilq~~YPerL~~i~IINaP~~f~~lw~i 279 (460)
.-.+|+|+++++. ++...+..+..+.+-++ .+=.++++.|++.-+.-++..
T Consensus 49 ~~~vvlDls~v~~--iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~ 99 (130)
T 4dgh_A 49 PQILILRLKWVPF--MDITGIQTLEEMIQSFH----KRGIKVLISGANSRVSQKLVK 99 (130)
T ss_dssp CSEEEEECTTCCC--CCHHHHHHHHHHHHHHH----TTTCEEEEECCCHHHHHHHHH
T ss_pred CCEEEEECCCCCc--ccHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHH
Confidence 3568999999885 45556777777766555 466789999998877666554
Done!