BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012612
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 224 bits (571), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 225/436 (51%), Gaps = 25/436 (5%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIW 87
G + +AGWV T F+ + D + + +Q V+ + G + K+ + +S+
Sbjct: 16 GKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSVI 73
Query: 88 IQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
++G V + + E+ V K+ V+ S+ P ++ S E L HL RT A
Sbjct: 74 VEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASA 133
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQ 206
+ +V+ L A ++ ++G+ + PI+ EG F L +F+K A+L+ S Q
Sbjct: 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLF---KLKYFDKYAYLSQSAQ 190
Query: 207 LNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266
L E L V++ P+FRAE S T RHL EFW +E E A+ DL D M + Y+
Sbjct: 191 LYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYM 250
Query: 267 VRYILDNCKEDMDFFNTWIEKGIIDRLSTV--AERDFVQLSYTDAIELLIKAKKKFEFLV 324
V+ L+ K++++ F D L+T+ E F ++SY +AI++L V
Sbjct: 251 VQRTLELRKKEIEMFR--------DDLTTLKNTEPPFPRISYDEAIDILQSKGVN----V 298
Query: 325 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPR-IG 382
+WG DL ++ ER LTEE P V YPK IKAFYM+++ +D R V A DML P G
Sbjct: 299 EWGDDLGADEERVLTEEF--DRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYG 356
Query: 383 ELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442
E+IGGSQ ++ Y WYLDLR YGSVPH+GFGLG ERLV + +
Sbjct: 357 EIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKL 416
Query: 443 ENIRDAIPFPRTPGSV 458
++IR A FPRTP +
Sbjct: 417 DHIRWAALFPRTPARL 432
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 218/442 (49%), Gaps = 39/442 (8%)
Query: 29 GLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G ++ GW +R A+ ++ F+E+ DGS QCV+ E + K L+T S+
Sbjct: 30 GKLVTFKGWAYHIRKARKTLIFVELRDGS--GYCQCVIFG-KELCEPEKVKLLTRECSLE 86
Query: 88 IQG--------NVVPSQGSKQKVELKVNKIVLVGKS--DPSYPIQKKRVSREFLRTKAHL 137
I G N P +E++V + ++G+S D I K + ++ + H+
Sbjct: 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNR-HI 145
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEK 197
R+ V ++R+ + + K++ +N F I P I + CEG F L +F +
Sbjct: 146 VIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLF---KLQYFNE 202
Query: 198 PAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 257
PA+LT S QL E+ +L + ++RAE S T RHLAE+ +E EL F +D +
Sbjct: 203 PAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLN 262
Query: 258 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL----- 312
+L+ +V ++DN M I K ++ + R F +++Y DAI+
Sbjct: 263 ----HLEDLVCTVIDNV---MAVHGDKIRK--MNPHLKLPTRPFKRMTYADAIKYCNDHG 313
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
++ K FE+ G D+ + ER +T+E GCP+ + +P ++KAFYM + +
Sbjct: 314 ILNKDKPFEY----GEDISEKPERQMTDEI--GCPIFMIHFPSKMKAFYMSKVPGHPDLT 367
Query: 373 -AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLG 431
++D+L+P +GE++GGS LN D Y+WY R YGS PH G+GLG
Sbjct: 368 ESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLG 427
Query: 432 FERLVQFATGVENIRDAIPFPR 453
ERLV + G ++IR +PR
Sbjct: 428 VERLVMWLLGEDHIRKVCLYPR 449
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 205/434 (47%), Gaps = 27/434 (6%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ + R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVS 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + +FE+ AFL S
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELF---PMKYFEEDAFLAES 190
Query: 205 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAY 262
QL E A+ L VY P FRAE NT+RHL E W I+ E+AF D ++ M+
Sbjct: 191 PQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERL 250
Query: 263 LQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 322
+ + + Y+ ++ +++D N +E+ + F ++SY A+E+L K+
Sbjct: 251 VAHAINYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKE--- 298
Query: 323 LVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP 379
+ WG D+ +E ER L + E + YP E K FY+ + D+ + L
Sbjct: 299 -IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEY 357
Query: 380 RIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 439
R E+ G Q LN +S+ +YL YG PH GFGLG ERL++
Sbjct: 358 RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQM 417
Query: 440 TGVENIRDAIPFPR 453
+ NIR+ I FPR
Sbjct: 418 LDLPNIREVILFPR 431
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 204/434 (47%), Gaps = 27/434 (6%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + D E + + + + +
Sbjct: 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK--LRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTF 144
++G V + +K E+ KIV++ +++ P+ + L T+ R R
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEV 133
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVS 204
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + +FE+ AFL S
Sbjct: 134 MAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELF---PMKYFEEDAFLAQS 190
Query: 205 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAY 262
QL + A+ L VY P FRAE NT+RHL E W I+ E+AF D ++ M+
Sbjct: 191 PQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERL 250
Query: 263 LQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 322
+ + + Y+ ++ +++D N +E+ + F ++SY A+E+L K+
Sbjct: 251 VAHAINYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKE--- 298
Query: 323 LVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP 379
+ WG D+ +E ER L + E + YP E K FY+ + D+ + L
Sbjct: 299 -IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEY 357
Query: 380 RIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 439
R E+ G Q LN +S+ +YL YG PH GFGLG ERL++
Sbjct: 358 RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQM 417
Query: 440 TGVENIRDAIPFPR 453
+ NIR+ I FPR
Sbjct: 418 LDLPNIREVILFPR 431
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 208/436 (47%), Gaps = 29/436 (6%)
Query: 32 IVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 16 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 71
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 72 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG 205
A+ R+R A A + F G++ ++ P + + EG F LD+F + +FLT S
Sbjct: 132 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF---NLDYFGEQSFLTQSS 188
Query: 206 QLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 265
QL ET L +V+ ++RAE S T RHLAE+ +E E F L D M +
Sbjct: 189 QLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCD 248
Query: 266 VVRYIL--DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF- 322
V +L + K+ ++ N + ER F+++ Y DAI+ L + + EF
Sbjct: 249 TVDRLLADEEAKKLLEHINPKFQP---------PERPFLRMEYKDAIKWLQEHNVENEFG 299
Query: 323 -LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYM-RQNDDGRTVAAMDMLVPR 380
+G D+ ER++T+ P++++ +P EIKAFYM R D ++D+L+P
Sbjct: 300 NTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAKDNTLTESVDLLMPG 357
Query: 381 IGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440
+GE++GGS +++ Y+WYLD R YG+ PH G+GLG ER + + T
Sbjct: 358 VGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLT 417
Query: 441 GVENIRDAIPFPRTPG 456
+IRD +PR G
Sbjct: 418 NTNHIRDVCLYPRFVG 433
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 208/436 (47%), Gaps = 29/436 (6%)
Query: 32 IVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ + GW+ +R Q S+ F + DG+ + +M + YD + + T ++ I G
Sbjct: 14 VCIKGWIHRMRRQGKSLMFFILRDGTGFLQV-LLMDKLCQTYDALT---VNTECTVEIYG 69
Query: 91 NV--VPS-QGSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFG 145
+ VP + + EL + ++G + P + + S + + HL R
Sbjct: 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA 129
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG 205
A+ R+R A A + F G++ ++ P + + EG F LD+F + +FLT S
Sbjct: 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF---NLDYFGEQSFLTQSS 186
Query: 206 QLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 265
QL ET L +V+ ++RAE S T RHLAE+ +E E F L D M +
Sbjct: 187 QLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCD 246
Query: 266 VVRYIL--DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF- 322
V +L + K+ ++ N + ER F+++ Y DAI+ L + + EF
Sbjct: 247 TVDRLLADEEAKKLLEHINPKFQP---------PERPFLRMEYKDAIKWLQEHNVENEFG 297
Query: 323 -LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYM-RQNDDGRTVAAMDMLVPR 380
+G D+ ER++T+ P++++ +P EIKAFYM R D ++D+L+P
Sbjct: 298 NTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPG 355
Query: 381 IGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440
+GE++GGS +++ Y+WYLD R YG+ PH G+GLG ER + + T
Sbjct: 356 VGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLT 415
Query: 441 GVENIRDAIPFPRTPG 456
+IRD +PR G
Sbjct: 416 NTNHIRDVCLYPRFVG 431
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/428 (28%), Positives = 198/428 (46%), Gaps = 24/428 (5%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++ AGWV LR FI + D + L + S A G Q +T + I +
Sbjct: 16 GKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNSSAFGISQE----LTQESVIQV 71
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRP---RTNTFG 145
+G V + + + +EL +I L+ K+ P+ + + T+ R R
Sbjct: 72 RGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQ 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG 205
AV ++++ A + + GFI I +P I AS EG + F V +F K AFL S
Sbjct: 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVI---YFGKEAFLAQSP 188
Query: 206 QLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 265
QL E A + V+ P +RAE S+T HLAEF ++ E+AFAD D M L
Sbjct: 189 QLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHN 248
Query: 266 VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 325
+V+ I + KE++ N + I +L YT+AIE+L + + +K
Sbjct: 249 IVKTIKEEGKEELKILNYEPPEVKI---------PIKRLKYTEAIEIL----RSKGYNIK 295
Query: 326 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELI 385
+G D+ + R L EE IV D+P + + FY + + ++ L+ + E++
Sbjct: 296 FGDDIGTPELRILNEELKEDLYFIV-DWPSDARPFYTKSKSENPELSESFDLIYKFLEIV 354
Query: 386 GGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 445
GS L +S+ ++L YG PHAGFG+G RL+ TG++++
Sbjct: 355 SGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSV 414
Query: 446 RDAIPFPR 453
++ +PFPR
Sbjct: 415 KEIVPFPR 422
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 184/408 (45%), Gaps = 32/408 (7%)
Query: 58 LSNMQCVMTSDAEGYDQVKSG---LITTGASIWIQGNVVPSQGSKQKVELKVNKI-VLVG 113
L +Q ++ D G QV +G L +++ ++G VV + + +E++ ++ VL
Sbjct: 28 LGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSP 87
Query: 114 KSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWI 170
+P+ P ++ R + + L ++ R A +V+ AL ++ F I
Sbjct: 88 ALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEI 147
Query: 171 SSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN 230
+P + + EG F V D+FEK A+L S QL + VY P +R E
Sbjct: 148 FTPKVVRAGAEGGSGLFGV---DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEE 204
Query: 231 SNTSRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFN-TWIEKG 288
+TSRHL E+ ++ E+ F AD +D M A L ++ L+ +++ TW
Sbjct: 205 HHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW---- 260
Query: 289 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGG 345
+D +L++ +A +L K E G DL E ER L E E +G
Sbjct: 261 ------PSFPQDIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKERWGS 309
Query: 346 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXK 405
+ V+ YP+ ++ FY +DG T + D+L R E+ G Q
Sbjct: 310 DWLFVTRYPRSVRPFYTYPEEDG-TTRSFDLLF-RGLEITSGGQRIHRYEELLESLKAKG 367
Query: 406 LNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
++ +++ YL++ YG PH GF +G ERL Q G+ N+R A FPR
Sbjct: 368 MDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPR 415
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/493 (24%), Positives = 211/493 (42%), Gaps = 77/493 (15%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 21 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 74
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 75 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 134
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 135 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 194
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFG 223
F + +P + + EG F VT +F+ A+L S Q N + A VY G
Sbjct: 195 KKFTEVHTPKLLGAPSEGGSSVFEVT---YFKGKAYLAQSPQFNKQQLIVADFERVYEIG 251
Query: 224 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 283
P FRAENSNT RH+ EF ++ E+AF + + +LD E F +
Sbjct: 252 PVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE--------------VLDTLSELFVFIFS 297
Query: 284 WIEKGIIDRLSTVAER------------DFVQLSYTDAIELLIKAKKK---FEFLVKWGC 328
+ K + V ++ V+L+Y + IE+L A K+ FE
Sbjct: 298 ELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFE------- 350
Query: 329 DLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGEL 384
DL +E+E++L + + I+ +P EI+ FY M + + + D + R E+
Sbjct: 351 DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFM-RGEEI 409
Query: 385 IGGSQXXXXXXXXXXXXXXXKLNRDSYWW--YLDLRHYGSVPHAGFGLGFERLVQFATGV 442
+ G+Q L+ + Y D YG PHAG G+G ER+V F +
Sbjct: 410 LSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDL 469
Query: 443 ENIRDAIPFPRTP 455
+NIR A FPR P
Sbjct: 470 KNIRRASLFPRDP 482
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/493 (24%), Positives = 211/493 (42%), Gaps = 77/493 (15%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+K++K VD+ +E D ++ A T + +++ F+ + + L +Q ++ ++
Sbjct: 24 QKRVKFVDL----DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKAN 77
Query: 69 AEGY---DQVK-SGLITTGASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSY 119
EG + VK +G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 78 KEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 137
Query: 120 PIQKKRVSREFLRTKAHLRP---------------RTNTFGAVARVRNALAYATHKFFQE 164
PI + SR +A P RT T A+ R++ + ++
Sbjct: 138 PILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT 197
Query: 165 NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFG 223
F + +P + + EG F VT +F+ A+L S Q N + A VY G
Sbjct: 198 KKFTEVHTPKLLGAPSEGGSSVFEVT---YFKGKAYLAQSPQFNKQQLIVADFERVYEIG 254
Query: 224 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 283
P FRAENSNT RH+ EF ++ E+AF + + +LD E F +
Sbjct: 255 PVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE--------------VLDTLSELFVFIFS 300
Query: 284 WIEKGIIDRLSTVAER------------DFVQLSYTDAIELLIKAKKK---FEFLVKWGC 328
+ K + V ++ V+L+Y + IE+L A K+ FE
Sbjct: 301 ELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFE------- 353
Query: 329 DLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGEL 384
DL +E+E++L + + I+ +P EI+ FY M + + + D + R E+
Sbjct: 354 DLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFM-RGEEI 412
Query: 385 IGGSQXXXXXXXXXXXXXXXKLNRDSYWW--YLDLRHYGSVPHAGFGLGFERLVQFATGV 442
+ G+Q L+ + Y D YG PHAG G+G ER+V F +
Sbjct: 413 LSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDL 472
Query: 443 ENIRDAIPFPRTP 455
+NIR A FPR P
Sbjct: 473 KNIRRASLFPRDP 485
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 142/330 (43%), Gaps = 36/330 (10%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPA 199
RT T A+ R+++A +F F+ I +P + EG F V +F++ A
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVK---YFDRKA 292
Query: 200 FLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 258
+L S QL + V+ GP FRAENSNT RHL EF ++ E+ ++ ++
Sbjct: 293 YLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEM---EIVENYHE 349
Query: 259 ATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE---------RDFVQLSYTDA 309
++ + +I D I K D L + + R F++L+Y +A
Sbjct: 350 CIDVMEKLFTFIFDE-----------IPKRFPDELKVIRKQYPFEDLIYRPFLRLTYKEA 398
Query: 310 IELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQN 365
IE+L + E + + D + E L E + I+ +P I+ FY M
Sbjct: 399 IEML---RASGETIGDYD-DFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDI 454
Query: 366 DDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPH 425
DD + D+ V R E+ G+Q ++ + Y++ +GS PH
Sbjct: 455 DDPNYSNSYDVFV-RGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPH 513
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFPRTP 455
AG G+G ER+ G+ NIR FPR P
Sbjct: 514 AGCGIGLERITMLYLGIPNIRKVTLFPRDP 543
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 131/324 (40%), Gaps = 53/324 (16%)
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWIS----SPIITASDCEGAGEQFCVTTLDFFEK 197
+ + A+ L Y T KFF + GF W+ SPI + AGE +D +
Sbjct: 10 DIYKAIDIQTKILDYMT-KFFTDRGFKWLLPIMLSPITDPLWPDPAGEGIRPAEVDVYGV 68
Query: 198 PAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 254
LT S L+ + A L ++ P R E+ + RH EF ++ E+ A +KD
Sbjct: 69 RMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIEGAKMKD 128
Query: 255 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 314
M ++ ++ + +E W + R F Y D +E
Sbjct: 129 VMRL----IEELIYGLFRKAEE-------WTGR------EFPRARHFKVYDYKDILE--- 168
Query: 315 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 374
++G D ++ E EE P + + P+E FY R+ +
Sbjct: 169 ----------EFGSDEKASME---MEE-----PFWIVNIPRE---FYDREENG--VWKNY 205
Query: 375 DMLVPR-IGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSV-PHAGFGLGF 432
D+++P GE+ G + L DS+ YL++ G + P AG G+G
Sbjct: 206 DLILPYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLKPSAGAGIGV 265
Query: 433 ERLVQFATGVENIRDAIPFPRTPG 456
ERLV+F G ++I + PFPR PG
Sbjct: 266 ERLVRFIVGAKHIAEVQPFPRVPG 289
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 124/312 (39%), Gaps = 53/312 (16%)
Query: 154 LAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNA 209
L Y T FF + GF W I SPI + AGE ++ + LT S L+
Sbjct: 22 LEYMTD-FFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHK 80
Query: 210 E-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266
+ A L ++ P R E+ + RH EF ++ E+ A ++D M + +
Sbjct: 81 QLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIM-------RLI 133
Query: 267 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 326
R + G+ + R+F + + E E L ++
Sbjct: 134 ERLVY----------------GLFRKAEEWTGREFPKTKRFEVFEYS-------EVLEEF 170
Query: 327 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR-IGELI 385
G D ++ E EE F + Y +E+ F+ D+++P GE+
Sbjct: 171 GSDEKASQE---MEEPFWIINIPREFYDREVDGFWRN----------YDLILPYGYGEVA 217
Query: 386 GGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVEN 444
G + LN DS+ YL++ G + P AG G+G ERLV+F G ++
Sbjct: 218 SGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKH 277
Query: 445 IRDAIPFPRTPG 456
I + PFPR PG
Sbjct: 278 IAEVQPFPRIPG 289
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/457 (20%), Positives = 181/457 (39%), Gaps = 41/457 (8%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
E L+ + + VAG + T R F + D +Q + D G Q + I+
Sbjct: 49 KEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQD--VTGQIQIYVRQDDVGEQQYELFKIS 106
Query: 82 T-GASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ-------KKRVSREFLRT 133
G + ++G + ++ + + +KV+ + K+ P + ++R + +L
Sbjct: 107 DLGDIVGVRGTMFKTKVGE--LSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDL 164
Query: 134 KAHLRPRTN-TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ P + TF R+ + + ++ +G++ + +P++ A GA + +T
Sbjct: 165 I--MNPESKKTFIT----RSLIIQSMRRYLDSHGYLEVETPMMHAV-AGGAAARPFITHH 217
Query: 193 DFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251
+ + ++ ++ +L+ + L VY G FR E +T RH EF M+E A+AD
Sbjct: 218 NALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIST-RHNPEFTMLELYEAYAD 276
Query: 252 LKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLSTVAERDF-VQLS 305
+D M + ++ +L K +D W ++D + DF Q+S
Sbjct: 277 FRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMS 336
Query: 306 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365
+A EL + + + +G + E+ + ++ P + +P EI +
Sbjct: 337 DEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLI--QPTFIYGHPVEISPLAKKNP 394
Query: 366 DDGRTVAAMDMLV---------PRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLD 416
DD R ++ + + + I Q D +L+
Sbjct: 395 DDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE--DFLE 452
Query: 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
YG P G G+G +RLV T +IRD + FP+
Sbjct: 453 ALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQ 489
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 103/474 (21%), Positives = 182/474 (38%), Gaps = 75/474 (15%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 57 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 114
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 115 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 167
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++ GA +
Sbjct: 168 QRYLDLIANDKSR-QTFV----VRSKILAAIRQFMVARGFMEVETPMMQVIPG-GASARP 221
Query: 188 CVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
+T + + +L ++ +L + V+ FR E + RH EF M+E
Sbjct: 222 FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV-RHNPEFTMMELY 280
Query: 247 LAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTVAE 298
+A+AD D + + + + + +L K DF F + I + E
Sbjct: 281 MAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR--PE 338
Query: 299 RDFVQLSYTDAIELL-----IKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGCP 347
D L DA + L I +K WG R +TE EA P
Sbjct: 339 TDMADLDNFDAAKALAESIGITVEK------SWGLG------RIVTEIFDEVAEAHLIQP 386
Query: 348 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLN 407
+++YP E+ R + + + + G IG ++N
Sbjct: 387 TFITEYPAEVSPLARRNDVNPEITDRFEFFIG--GREIGNGFSELNDAEDQAERFQEQVN 444
Query: 408 ------RDSYWW---YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
++ ++ Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 445 AKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/469 (21%), Positives = 175/469 (37%), Gaps = 59/469 (12%)
Query: 19 GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG 78
G NE L+ + + + VAG + T R +F+ + D +Q + D + G
Sbjct: 54 GKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQD--VGGRIQLYVARD-----DLPEG 106
Query: 79 LITTGASIWIQGNVVPSQGSKQKV---ELKVN--KIVLVGKSDPSYPI-------QKKRV 126
+ W G+++ ++G K EL ++ ++ L+ K+ P Q+ R
Sbjct: 107 VYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARY 166
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ +L ++ R NTF +VR+ + +F GF+ + +P++ A
Sbjct: 167 RQRYLDLISNDESR-NTF----KVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARP 221
Query: 187 FCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245
F +T + + +L ++ +L + V+ FR E + RH EF M+E
Sbjct: 222 F-ITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV-RHNPEFTMMEL 279
Query: 246 ELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTVA 297
+A+AD KD + + + + + IL + +DF F + I +
Sbjct: 280 YMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYR--P 337
Query: 298 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGCPVIVS 351
E D L D+ + I WG R +TE EA P ++
Sbjct: 338 ETDMADLDNFDSAK-AIAESIGIHVEKSWGLG------RIVTEIFEEVAEAHLIQPTFIT 390
Query: 352 DYPKEIKAFYMRQNDDGRTVAAMDMLV--PRIGELIGGSQXXXXXXXXXXXXXXXKLNRD 409
+YP E+ R + + + + IG K D
Sbjct: 391 EYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGD 450
Query: 410 SYWWYLD------LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
+ D L H G P AG G+G +R+V T IRD I FP
Sbjct: 451 DEAMFYDEDYVTALEH-GLPPTAGLGIGIDRMVMLFTNSHTIRDVILFP 498
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 354 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLN----RD 409
PK++ A ++ + A DM++ E+ GGS +N R+
Sbjct: 454 PKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQRE 512
Query: 410 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 513 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL---D 193
L R + R + +F ++GF+ I +P++T + EGA + + +
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGK 186
Query: 194 FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 249
F+ P + QL + Y FR E+ R EF I+ E +F
Sbjct: 187 FYALPQSPQLFKQL---LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSF 238
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 354 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLN----RD 409
PK++ A ++ + A DM++ E+ GGS +N R+
Sbjct: 454 PKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQRE 512
Query: 410 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 513 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84
L VG + + GWV R S+ FI++ D + +Q D ++ S L
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASEL-RNEF 67
Query: 85 SIWIQGNV-------VPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AH 136
I + G V + + ++E+ + + ++ ++D P+ V+ E R K +
Sbjct: 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRY 126
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL---D 193
L R + R + +F ++GF+ I +P++T + EGA + + +
Sbjct: 127 LDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGK 186
Query: 194 FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 249
F+ P + QL + Y FR E+ R EF I+ E +F
Sbjct: 187 FYALPQSPQLFKQL---LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSF 238
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 110/492 (22%), Positives = 176/492 (35%), Gaps = 108/492 (21%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS---DAEGYDQVKSG 78
E L+ L + +AG + R +F V DGS +Q +T AE YD K
Sbjct: 79 KEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQFFVTPADVGAETYDAFKK- 135
Query: 79 LITTGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRT 133
W G++V ++G +K ++ +K ++ L+ K+ P + ++ + R
Sbjct: 136 --------WDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRY 187
Query: 134 KAH-----LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC 188
+ + P T T R R + KF + F+ + +P++ A + F
Sbjct: 188 RQRYVDLIVTPETRT---TFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPF- 243
Query: 189 VTTLDFFEKPAFLTVSGQLNAETYAT-ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPEL 247
VT + + FL ++ +L + V+ FR E + RH EF M+E
Sbjct: 244 VTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGV-SPRHNPEFTMMEFYA 302
Query: 248 AFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA------ERDF 301
A+ D R++ MDF I + +D L T E D
Sbjct: 303 AYTD---------------YRWL-------MDFTERLIRQAAVDALGTATIQYQGRELDL 340
Query: 302 VQ----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY---LTEEAFGGC-------- 346
Q L+ T AI+ A + + L+SE +R +T+ AF
Sbjct: 341 AQPFHRLTITQAIQKY--APSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLA 398
Query: 347 ------------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXX--- 391
P + DYP E+ R++D TVA + R I G +
Sbjct: 399 LFEETAEAQLWEPTFIIDYPIEVSPL-ARESD---TVAG---ITERFELFITGREIANGF 451
Query: 392 ------XXXXXXXXXXXXXKLNRDSYWWYLDLRH-----YGSVPHAGFGLGFERLVQFAT 440
K D + D + YG P G G+G +RLV T
Sbjct: 452 SELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLT 511
Query: 441 GVENIRDAIPFP 452
IRD + FP
Sbjct: 512 DSPTIRDVLLFP 523
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PH G LG +RL+ TG +IRD I FP++
Sbjct: 534 YGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKS 568
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 22/259 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---DQVKSGLITTGA 84
VG +V+ GWV R + F+++ D L +Q V + Y ++V+ +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRAK 72
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKI-VLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNT 143
+ + + +VE++++ + VL P +P+ E LR +
Sbjct: 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRY 132
Query: 144 FGAVA-------RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFE 196
R+R+ + A F GF+ + +P +T S EGA F V +
Sbjct: 133 LDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA-RDFLVP---YRH 188
Query: 197 KPAF---LTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
+P L S QL + A L + FR E+ R +F ++ E++F ++
Sbjct: 189 EPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEV 247
Query: 253 KDDMACATAYLQYVVRYIL 271
+D + + +V R L
Sbjct: 248 EDVLELNERLMAHVFREAL 266
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 407 NRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
R+ + ++L+ YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 504 QREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|2LNA|A Chain A, Solution Nmr Structure Of The Mitochondrial Inner Membrane
Domain (Residues 164-251), Ftsh_ext, From The
Paraplegin-Like Protein Afg3l2 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr6741a
Length = 99
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 279 DFFNTWIEKGIIDRLSTVAERDFVQLSYT 307
DF N ++ KG++DRL V +R FV++++T
Sbjct: 22 DFVNNYLSKGVVDRLEVVNKR-FVRVTFT 49
>pdb|4F27|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
Length = 363
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLDF-FEKPAF-------------LTVSGQ 206
+FQ G + ++ P++ A+D +G VT DF EK AF V+GQ
Sbjct: 14 YFQ--GSLAVAEPVVNAADAKGTNVNDKVTASDFKLEKTAFDPNQSGNTFXAANFKVTGQ 71
Query: 207 LNAETYATA-LSNVYTFGPTFRAENSNTSRHLAE 239
+ + Y TA L + T NSN + +A+
Sbjct: 72 VKSGDYFTAKLPDSVTGNGDVDYSNSNNTXPIAD 105
>pdb|4F1Z|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F20|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F24|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
Length = 363
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLDF-FEKPAF-------------LTVSGQ 206
+FQ G + ++ P++ A+D +G VT DF EK AF V+GQ
Sbjct: 14 YFQ--GSLAVAEPVVNAADAKGTNVNDKVTASDFKLEKTAFDPNQSGNTFMAANFKVTGQ 71
Query: 207 LNAETYATA-LSNVYTFGPTFRAENSNTSRHLAE 239
+ + Y TA L + T NSN + +A+
Sbjct: 72 VKSGDYFTAKLPDSVTGNGDVDYSNSNNTMPIAD 105
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 31/146 (21%)
Query: 120 PIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI------WISSP 173
P+ R REF++ A RP T R+ L + + N I WI P
Sbjct: 44 PVFHPRFKREFIQEPAKNRPGPQT-------RSDLLLSGRDW---NTLIVGKLSPWIR-P 92
Query: 174 IITASDCEGAGEQFCVTTLDF---FEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN 230
E + L+F PAFL Q + A L+N +
Sbjct: 93 DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDNTNLARVLTN-----------H 141
Query: 231 SNTSRHLAEFWMIEPELAFADLKDDM 256
+T H + FWM P +A DL+DD+
Sbjct: 142 IHTGHHSSMFWMRVPLVAPEDLRDDI 167
>pdb|3SPS|A Chain A, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|B Chain B, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|C Chain C, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|D Chain D, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|E Chain E, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|F Chain F, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
Length = 169
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 118 SYPIQKKRVSREFLRTKAHLRPRTNTFGAV--ARVRNALAYATHKFFQENGFIWISSPII 175
SYP+++ R ++T+ L P TN G + +V LAY + +S ++
Sbjct: 16 SYPVERSRT----IQTRLVLPPDTNHLGTIFGGKV---LAY-IDEIAALTAMKHANSAVV 67
Query: 176 TASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSN 218
TAS + + T D E F+T +G+ + E Y SN
Sbjct: 68 TAS-IDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSN 109
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG 344
+EKG+ ST DFV++S+ A++L+ K+ E E Y E FG
Sbjct: 107 LEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVE-------------ETYGPEGVFG 153
Query: 345 GC 346
G
Sbjct: 154 GS 155
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 426 AGFGLGFERLVQFATGVENIRDAIPF 451
+G LG +RLV A G E++ D I F
Sbjct: 296 SGVALGVDRLVMLALGAESLADVIAF 321
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG 344
+EKG+ ST DFV++S+ A++L+ K+ E E Y E FG
Sbjct: 107 LEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVE-------------ETYGPEGVFG 153
Query: 345 GC 346
G
Sbjct: 154 GS 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,529,946
Number of Sequences: 62578
Number of extensions: 546604
Number of successful extensions: 1134
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 39
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)