Query 012612
Match_columns 460
No_of_seqs 195 out of 1393
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02603 asparaginyl-tRNA synt 100.0 4E-111 8E-116 882.9 43.3 457 4-460 82-565 (565)
2 COG0017 AsnS Aspartyl/asparagi 100.0 1E-111 3E-116 847.6 36.8 428 10-460 3-435 (435)
3 PTZ00425 asparagine-tRNA ligas 100.0 2E-107 5E-112 852.3 41.9 432 26-460 78-586 (586)
4 PLN02221 asparaginyl-tRNA synt 100.0 2E-106 3E-111 847.8 41.2 451 5-460 26-572 (572)
5 TIGR00457 asnS asparaginyl-tRN 100.0 1E-106 3E-111 838.6 39.8 441 13-459 3-452 (453)
6 PRK03932 asnC asparaginyl-tRNA 100.0 7E-106 1E-110 834.7 41.1 439 11-459 3-449 (450)
7 PLN02532 asparagine-tRNA synth 100.0 4E-106 1E-110 845.8 39.1 450 5-459 23-632 (633)
8 TIGR00458 aspS_arch aspartyl-t 100.0 2E-101 4E-106 796.5 39.4 418 13-459 2-427 (428)
9 PRK05159 aspC aspartyl-tRNA sy 100.0 6E-101 1E-105 796.5 37.5 422 10-459 3-436 (437)
10 KOG0554 Asparaginyl-tRNA synth 100.0 2E-100 5E-105 740.5 29.1 433 16-460 7-446 (446)
11 PTZ00401 aspartyl-tRNA synthet 100.0 3.3E-98 7E-103 785.3 40.4 430 11-459 65-549 (550)
12 PLN02850 aspartate-tRNA ligase 100.0 5.3E-98 1E-102 783.8 39.1 426 10-459 68-529 (530)
13 PLN02502 lysyl-tRNA synthetase 100.0 9E-97 2E-101 774.9 39.3 440 3-455 79-550 (553)
14 TIGR00499 lysS_bact lysyl-tRNA 100.0 2.5E-96 5E-101 768.4 38.8 430 3-456 23-494 (496)
15 PRK00484 lysS lysyl-tRNA synth 100.0 7.4E-96 2E-100 764.8 39.8 429 3-456 24-489 (491)
16 PRK12445 lysyl-tRNA synthetase 100.0 1.2E-95 3E-100 763.0 39.8 429 3-456 35-503 (505)
17 COG0173 AspS Aspartyl-tRNA syn 100.0 1.8E-94 3.9E-99 729.3 35.9 411 10-457 2-559 (585)
18 PTZ00417 lysine-tRNA ligase; P 100.0 3.3E-94 7.1E-99 757.6 38.3 443 3-456 103-583 (585)
19 COG1190 LysU Lysyl-tRNA synthe 100.0 1.9E-94 4.1E-99 726.3 28.8 441 3-456 31-500 (502)
20 PTZ00385 lysyl-tRNA synthetase 100.0 4.3E-93 9.4E-98 750.4 39.0 442 4-456 79-564 (659)
21 TIGR00459 aspS_bact aspartyl-t 100.0 8.5E-92 1.8E-96 739.1 39.6 429 10-458 2-557 (583)
22 PRK02983 lysS lysyl-tRNA synth 100.0 3.2E-89 6.8E-94 767.0 39.0 428 2-456 630-1092(1094)
23 PLN02903 aminoacyl-tRNA ligase 100.0 5E-88 1.1E-92 712.6 38.5 435 9-457 58-624 (652)
24 KOG0556 Aspartyl-tRNA syntheta 100.0 3.9E-89 8.5E-94 661.7 27.4 425 10-458 69-531 (533)
25 KOG1885 Lysyl-tRNA synthetase 100.0 5.5E-90 1.2E-94 678.2 19.9 442 2-455 74-555 (560)
26 PRK00476 aspS aspartyl-tRNA sy 100.0 3.1E-87 6.8E-92 710.0 37.9 434 9-457 3-561 (588)
27 PRK12820 bifunctional aspartyl 100.0 1E-85 2.2E-90 701.4 36.9 434 9-457 4-577 (706)
28 KOG0555 Asparaginyl-tRNA synth 100.0 1.1E-83 2.4E-88 621.3 24.4 415 25-459 119-544 (545)
29 cd00776 AsxRS_core Asx tRNA sy 100.0 6E-81 1.3E-85 623.3 24.4 319 126-456 2-322 (322)
30 PRK06462 asparagine synthetase 100.0 6E-79 1.3E-83 611.1 23.6 317 127-458 9-333 (335)
31 KOG2411 Aspartyl-tRNA syntheta 100.0 3.8E-77 8.2E-82 590.3 30.1 435 9-457 33-600 (628)
32 PF00152 tRNA-synt_2: tRNA syn 100.0 9.2E-79 2E-83 613.5 18.3 312 128-455 2-334 (335)
33 cd00775 LysRS_core Lys_tRNA sy 100.0 1.1E-71 2.4E-76 557.8 25.7 296 141-455 1-328 (329)
34 cd00669 Asp_Lys_Asn_RS_core As 100.0 6.8E-70 1.5E-74 529.5 24.6 260 148-455 1-268 (269)
35 TIGR00462 genX lysyl-tRNA synt 100.0 3.8E-70 8.3E-75 541.0 22.0 288 148-451 1-304 (304)
36 cd00777 AspRS_core Asp tRNA sy 100.0 1.2E-64 2.6E-69 495.5 22.2 271 148-456 1-280 (280)
37 PRK09350 poxB regulator PoxA; 100.0 2.8E-64 6E-69 499.6 22.9 285 145-448 2-306 (306)
38 COG2269 Truncated, possibly in 100.0 1.4E-54 3.1E-59 406.0 17.6 293 144-455 12-321 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.9 2.7E-21 5.8E-26 169.9 13.6 122 11-143 2-134 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.8 1.1E-19 2.3E-24 152.1 13.0 100 32-137 2-103 (103)
41 cd04316 ND_PkAspRS_like_N ND_P 99.8 7.2E-19 1.6E-23 148.4 12.9 102 13-124 2-106 (108)
42 cd04322 LysRS_N LysRS_N: N-ter 99.8 1.4E-18 3E-23 146.7 12.6 102 31-139 1-108 (108)
43 cd00645 AsnA Asparagine synthe 99.8 6.8E-18 1.5E-22 161.0 14.7 268 154-450 3-298 (309)
44 PTZ00213 asparagine synthetase 99.8 2.2E-17 4.7E-22 159.3 16.1 278 146-450 6-334 (348)
45 PRK05425 asparagine synthetase 99.7 3.1E-17 6.7E-22 158.0 15.4 273 148-450 8-308 (327)
46 cd04318 EcAsnRS_like_N EcAsnRS 99.7 6.2E-17 1.4E-21 129.7 12.3 81 32-114 2-82 (82)
47 cd04320 AspRS_cyto_N AspRS_cyt 99.7 8.3E-17 1.8E-21 134.4 12.3 89 31-123 1-100 (102)
48 TIGR00669 asnA aspartate--ammo 99.7 1.6E-16 3.5E-21 152.6 15.2 275 147-450 4-315 (330)
49 cd04321 ScAspRS_mt_like_N ScAs 99.7 1.4E-16 3.1E-21 128.7 11.3 80 32-114 2-86 (86)
50 cd04323 AsnRS_cyto_like_N AsnR 99.7 4E-16 8.7E-21 125.6 11.4 79 32-114 2-84 (84)
51 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.7 1.2E-15 2.6E-20 123.1 11.6 79 32-114 2-85 (85)
52 PRK09537 pylS pyrolysyl-tRNA s 99.6 1.3E-14 2.8E-19 147.5 12.5 108 140-250 190-315 (417)
53 PF01409 tRNA-synt_2d: tRNA sy 99.6 1.8E-14 4E-19 138.5 11.0 191 152-448 20-236 (247)
54 COG0016 PheS Phenylalanyl-tRNA 99.5 5.3E-14 1.2E-18 138.7 11.4 191 152-448 114-325 (335)
55 PRK00488 pheS phenylalanyl-tRN 99.5 1.4E-13 3.1E-18 136.5 14.3 108 152-267 111-237 (339)
56 TIGR02367 PylS pyrrolysyl-tRNA 99.5 1.4E-13 3.1E-18 139.6 12.1 96 148-250 239-351 (453)
57 cd00768 class_II_aaRS-like_cor 99.4 1.7E-13 3.8E-18 128.3 6.4 99 151-251 2-111 (211)
58 PLN02853 Probable phenylalanyl 99.4 1.3E-12 2.8E-17 134.9 12.9 46 217-263 343-390 (492)
59 PTZ00326 phenylalanyl-tRNA syn 99.4 3E-12 6.4E-17 132.8 13.2 33 217-250 358-390 (494)
60 PLN02788 phenylalanine-tRNA sy 99.2 3.9E-11 8.6E-16 121.9 11.4 96 152-249 71-179 (402)
61 COG2502 AsnA Asparagine synthe 99.2 6.7E-10 1.4E-14 103.6 16.7 276 146-450 3-315 (330)
62 TIGR00468 pheS phenylalanyl-tR 99.2 9.7E-11 2.1E-15 116.0 11.8 105 152-263 75-198 (294)
63 TIGR00469 pheS_mito phenylalan 99.1 4.6E-10 9.9E-15 115.1 11.2 64 358-447 272-337 (460)
64 PRK04172 pheS phenylalanyl-tRN 99.1 4.6E-09 1E-13 111.3 16.9 105 145-250 229-383 (489)
65 cd00773 HisRS-like_core Class 99.0 2.3E-08 5E-13 97.6 16.5 100 148-251 2-116 (261)
66 PF01336 tRNA_anti-codon: OB-f 98.9 9E-09 2E-13 80.2 10.6 74 32-112 1-75 (75)
67 TIGR00470 sepS O-phosphoseryl- 98.8 2.2E-08 4.8E-13 102.1 9.1 50 217-266 208-259 (533)
68 cd00496 PheRS_alpha_core Pheny 98.6 2E-07 4.4E-12 88.5 10.1 109 153-266 5-131 (218)
69 TIGR00443 hisZ_biosyn_reg ATP 98.5 4E-06 8.6E-11 84.2 15.7 117 146-265 6-139 (314)
70 PF00587 tRNA-synt_2b: tRNA sy 98.4 4E-07 8.8E-12 83.2 6.8 116 150-268 1-136 (173)
71 COG0124 HisS Histidyl-tRNA syn 98.2 1.4E-05 3.1E-10 82.6 13.0 116 146-266 16-154 (429)
72 TIGR00442 hisS histidyl-tRNA s 98.1 1.2E-05 2.7E-10 83.2 10.8 104 145-251 11-131 (397)
73 cd00670 Gly_His_Pro_Ser_Thr_tR 98.1 8.2E-06 1.8E-10 78.0 8.6 103 149-251 3-125 (235)
74 cd00778 ProRS_core_arch_euk Pr 98.1 4.3E-06 9.3E-11 81.7 6.3 120 147-266 31-171 (261)
75 cd00772 ProRS_core Prolyl-tRNA 98.1 2.4E-05 5.2E-10 76.5 11.0 116 147-265 31-170 (264)
76 cd00779 ProRS_core_prok Prolyl 98.1 1E-05 2.2E-10 78.8 8.1 116 147-265 30-164 (255)
77 TIGR00409 proS_fam_II prolyl-t 98.0 4.5E-05 9.8E-10 82.3 12.3 122 146-270 45-188 (568)
78 PRK00037 hisS histidyl-tRNA sy 98.0 4.2E-05 9.1E-10 79.6 10.7 104 145-251 15-132 (412)
79 cd00771 ThrRS_core Threonyl-tR 97.9 4.2E-05 9.1E-10 76.2 9.5 113 147-264 29-161 (298)
80 PRK09194 prolyl-tRNA synthetas 97.9 7.9E-05 1.7E-09 80.7 11.7 123 145-270 44-188 (565)
81 cd00774 GlyRS-like_core Glycyl 97.9 1.3E-05 2.9E-10 77.9 5.1 95 147-248 31-141 (254)
82 KOG2783 Phenylalanyl-tRNA synt 97.8 8.6E-05 1.9E-09 73.9 8.4 83 166-250 94-184 (436)
83 PRK12444 threonyl-tRNA synthet 97.7 0.0001 2.3E-09 81.0 9.6 116 146-266 272-407 (639)
84 TIGR00414 serS seryl-tRNA synt 97.7 0.00011 2.5E-09 76.4 9.3 117 144-266 169-307 (418)
85 PRK05431 seryl-tRNA synthetase 97.7 0.00012 2.5E-09 76.5 9.2 116 145-266 167-305 (425)
86 KOG2784 Phenylalanyl-tRNA synt 97.7 3.9E-05 8.4E-10 75.7 5.0 117 145-266 212-384 (483)
87 PLN02908 threonyl-tRNA synthet 97.7 0.00017 3.8E-09 79.8 9.7 123 143-269 316-457 (686)
88 PRK12293 hisZ ATP phosphoribos 97.7 0.00025 5.5E-09 69.9 9.9 111 146-266 17-139 (281)
89 cd00770 SerRS_core Seryl-tRNA 97.7 0.00011 2.3E-09 73.2 7.3 116 145-266 49-186 (297)
90 PRK12305 thrS threonyl-tRNA sy 97.6 0.00021 4.6E-09 77.7 9.4 124 143-269 201-343 (575)
91 TIGR00418 thrS threonyl-tRNA s 97.6 0.0004 8.7E-09 75.3 11.2 116 144-264 196-332 (563)
92 CHL00201 syh histidine-tRNA sy 97.6 0.00036 7.8E-09 73.1 10.1 117 146-265 16-154 (430)
93 TIGR00408 proS_fam_I prolyl-tR 97.6 0.00017 3.7E-09 76.3 7.6 120 147-266 37-177 (472)
94 PRK12325 prolyl-tRNA synthetas 97.5 0.0005 1.1E-08 72.2 10.8 116 146-265 45-180 (439)
95 PF13393 tRNA-synt_His: Histid 97.5 0.00046 9.9E-09 69.0 10.1 116 145-264 7-139 (311)
96 PRK12292 hisZ ATP phosphoribos 97.5 0.00037 7.9E-09 72.2 9.6 118 145-266 14-151 (391)
97 PRK00413 thrS threonyl-tRNA sy 97.5 0.00045 9.8E-09 76.1 10.6 118 143-264 265-402 (638)
98 PRK14799 thrS threonyl-tRNA sy 97.5 0.00033 7.2E-09 75.1 8.9 122 143-269 163-304 (545)
99 PLN02972 Histidyl-tRNA synthet 97.5 0.0007 1.5E-08 74.5 10.9 121 143-266 336-471 (763)
100 PRK08661 prolyl-tRNA synthetas 97.5 0.00027 5.8E-09 74.9 7.4 118 146-264 42-180 (477)
101 PLN02530 histidine-tRNA ligase 97.4 0.00087 1.9E-08 71.4 10.8 118 144-265 80-216 (487)
102 PRK03991 threonyl-tRNA synthet 97.4 0.00067 1.5E-08 73.8 9.7 124 144-270 223-366 (613)
103 PRK12421 ATP phosphoribosyltra 97.4 0.001 2.2E-08 68.8 10.1 118 145-266 18-154 (392)
104 PLN02837 threonine-tRNA ligase 97.3 0.00067 1.5E-08 74.2 9.0 122 143-268 242-383 (614)
105 PRK12420 histidyl-tRNA synthet 97.3 0.0013 2.9E-08 68.7 10.6 119 144-266 14-152 (423)
106 PLN02678 seryl-tRNA synthetase 97.1 0.00071 1.5E-08 70.7 5.9 117 146-266 172-312 (448)
107 PRK04173 glycyl-tRNA synthetas 97.1 0.0015 3.2E-08 68.9 7.8 48 218-268 188-239 (456)
108 PRK12295 hisZ ATP phosphoribos 97.0 0.0048 1E-07 63.4 10.9 109 152-266 8-133 (373)
109 cd04487 RecJ_OBF2_like RecJ_OB 97.0 0.0062 1.4E-07 47.4 8.9 73 32-112 1-73 (73)
110 cd04489 ExoVII_LU_OBF ExoVII_L 97.0 0.011 2.3E-07 46.2 10.3 73 32-110 2-75 (78)
111 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.7 0.023 5E-07 46.2 10.6 77 32-115 2-80 (95)
112 PF03590 AsnA: Aspartate-ammon 96.5 0.023 4.9E-07 53.7 10.5 123 150-272 5-144 (244)
113 PLN02320 seryl-tRNA synthetase 96.4 0.0077 1.7E-07 63.6 7.1 116 147-268 232-370 (502)
114 PF13742 tRNA_anti_2: OB-fold 96.3 0.032 7E-07 46.1 9.2 77 29-110 21-98 (99)
115 COG0172 SerS Seryl-tRNA synthe 96.3 0.014 3E-07 60.3 8.0 115 146-266 172-308 (429)
116 cd04483 hOBFC1_like hOBFC1_lik 96.2 0.052 1.1E-06 44.2 9.6 70 34-110 2-90 (92)
117 PRK12294 hisZ ATP phosphoribos 96.2 0.03 6.4E-07 55.0 9.6 105 145-259 4-119 (272)
118 COG0442 ProS Prolyl-tRNA synth 96.1 0.013 2.9E-07 61.8 7.3 117 147-265 46-180 (500)
119 TIGR00415 serS_MJ seryl-tRNA s 96.1 0.027 5.7E-07 59.4 9.3 120 146-266 221-387 (520)
120 COG0423 GRS1 Glycyl-tRNA synth 96.1 0.0076 1.6E-07 63.0 5.1 30 148-177 40-71 (558)
121 cd04482 RPA2_OBF_like RPA2_OBF 96.1 0.05 1.1E-06 44.2 9.0 74 33-116 2-78 (91)
122 PRK00960 seryl-tRNA synthetase 96.1 0.0087 1.9E-07 63.5 5.6 120 145-265 220-386 (517)
123 PF10451 Stn1: Telomere regula 95.5 0.085 1.8E-06 51.2 9.5 79 27-113 64-148 (256)
124 COG1107 Archaea-specific RecJ- 95.5 0.022 4.8E-07 59.9 5.7 78 27-112 211-288 (715)
125 PF04076 BOF: Bacterial OB fol 95.4 0.11 2.5E-06 43.1 8.5 82 10-110 21-102 (103)
126 cd04490 PolII_SU_OBF PolII_SU_ 95.4 0.19 4.2E-06 39.6 9.5 67 32-109 2-72 (79)
127 cd03524 RPA2_OBF_family RPA2_O 95.2 0.22 4.8E-06 37.2 9.2 67 34-109 2-73 (75)
128 COG3111 Periplasmic protein wi 95.2 0.17 3.7E-06 42.8 8.9 83 11-112 45-127 (128)
129 PRK09616 pheT phenylalanyl-tRN 95.0 0.15 3.2E-06 55.3 10.2 112 151-265 361-488 (552)
130 PRK07373 DNA polymerase III su 94.9 0.13 2.8E-06 54.1 9.2 77 28-112 279-360 (449)
131 COG0441 ThrS Threonyl-tRNA syn 94.8 0.035 7.6E-07 59.9 4.8 115 146-270 218-357 (589)
132 COG5235 RFA2 Single-stranded D 94.8 0.17 3.7E-06 46.7 8.4 95 9-110 39-141 (258)
133 cd04492 YhaM_OBF_like YhaM_OBF 94.5 0.62 1.3E-05 36.2 10.4 62 45-115 18-79 (83)
134 TIGR00156 conserved hypothetic 94.5 0.45 9.7E-06 41.0 10.0 81 11-110 45-125 (126)
135 PF12869 tRNA_anti-like: tRNA_ 94.5 0.12 2.5E-06 45.5 6.7 83 11-95 44-132 (144)
136 cd04485 DnaE_OBF DnaE_OBF: A s 94.5 0.19 4.2E-06 38.9 7.3 72 34-113 2-78 (84)
137 TIGR00389 glyS_dimeric glycyl- 94.4 0.051 1.1E-06 58.3 5.0 30 148-177 37-67 (551)
138 KOG2324 Prolyl-tRNA synthetase 94.0 0.21 4.6E-06 49.9 7.9 121 147-271 51-191 (457)
139 PRK14894 glycyl-tRNA synthetas 93.9 0.32 6.8E-06 51.4 9.4 102 148-252 40-202 (539)
140 PRK14699 replication factor A; 93.4 0.56 1.2E-05 49.8 10.4 96 12-122 58-163 (484)
141 PRK10053 hypothetical protein; 93.3 0.69 1.5E-05 40.0 9.0 81 11-110 49-129 (130)
142 PRK05672 dnaE2 error-prone DNA 93.3 0.36 7.7E-06 56.0 9.4 79 28-114 952-1033(1046)
143 PRK15491 replication factor A; 93.2 0.58 1.3E-05 48.1 9.9 93 11-118 57-159 (374)
144 PRK07374 dnaE DNA polymerase I 93.0 0.36 7.9E-06 56.5 9.0 77 28-112 999-1080(1170)
145 cd04479 RPA3 RPA3: A subfamily 92.5 1.2 2.6E-05 36.8 9.1 67 27-113 13-79 (101)
146 PF08661 Rep_fac-A_3: Replicat 92.2 0.64 1.4E-05 39.0 7.2 58 27-96 16-73 (109)
147 PRK06826 dnaE DNA polymerase I 92.1 0.7 1.5E-05 54.2 9.8 80 28-114 990-1074(1151)
148 KOG1936 Histidyl-tRNA syntheta 92.0 0.36 7.7E-06 49.5 6.3 101 146-249 72-184 (518)
149 cd00769 PheRS_beta_core Phenyl 92.0 0.6 1.3E-05 43.4 7.6 107 153-265 4-136 (198)
150 PRK05673 dnaE DNA polymerase I 92.0 0.45 9.9E-06 55.7 8.1 79 28-114 976-1059(1135)
151 COG4085 Predicted RNA-binding 92.0 1 2.2E-05 41.3 8.6 76 27-107 49-128 (204)
152 PRK06920 dnaE DNA polymerase I 91.2 0.94 2E-05 52.8 9.5 78 28-113 942-1024(1107)
153 PF03100 CcmE: CcmE; InterPro 91.1 3.8 8.3E-05 35.6 11.2 85 12-118 37-126 (131)
154 COG3705 HisZ ATP phosphoribosy 91.1 0.53 1.2E-05 48.3 6.6 100 148-250 17-128 (390)
155 PRK06461 single-stranded DNA-b 90.7 3 6.6E-05 36.1 10.1 84 11-114 4-100 (129)
156 COG2024 Phenylalanyl-tRNA synt 89.3 0.22 4.8E-06 50.0 2.1 38 415-453 314-352 (536)
157 KOG2509 Seryl-tRNA synthetase 88.9 0.97 2.1E-05 46.5 6.3 117 145-265 182-320 (455)
158 PRK07279 dnaE DNA polymerase I 88.4 1.9 4.1E-05 49.9 9.1 74 29-110 884-963 (1034)
159 PRK13480 3'-5' exoribonuclease 88.4 3.6 7.8E-05 41.3 10.0 79 29-116 11-94 (314)
160 cd04474 RPA1_DBD_A RPA1_DBD_A: 87.0 3.9 8.4E-05 33.9 7.9 74 30-107 10-97 (104)
161 cd04491 SoSSB_OBF SoSSB_OBF: A 85.7 7.7 0.00017 30.3 8.7 54 45-109 22-76 (82)
162 PRK07211 replication factor A; 85.2 5.7 0.00012 42.1 9.8 82 12-109 54-146 (485)
163 cd04488 RecG_wedge_OBF RecG_we 84.9 9.8 0.00021 28.4 8.8 66 34-108 2-71 (75)
164 COG1570 XseA Exonuclease VII, 84.8 4.4 9.4E-05 42.2 8.5 76 29-110 23-99 (440)
165 COG1571 Predicted DNA-binding 84.6 5.2 0.00011 41.4 8.9 74 30-114 267-343 (421)
166 PRK07217 replication factor A; 84.3 17 0.00036 36.3 12.0 92 12-121 73-167 (311)
167 PRK14699 replication factor A; 84.1 6.2 0.00013 42.0 9.6 84 28-117 285-378 (484)
168 PRK15491 replication factor A; 83.8 8.2 0.00018 39.7 10.1 81 30-117 177-268 (374)
169 PRK10917 ATP-dependent DNA hel 83.5 8.9 0.00019 42.8 11.1 77 27-111 57-136 (681)
170 PRK12366 replication factor A; 83.4 8.5 0.00018 42.6 10.7 91 12-114 280-382 (637)
171 PRK00286 xseA exodeoxyribonucl 83.4 6.5 0.00014 41.3 9.5 79 29-113 23-102 (438)
172 cd04484 polC_OBF polC_OBF: A s 82.9 21 0.00046 28.1 11.0 73 32-110 2-80 (82)
173 TIGR00237 xseA exodeoxyribonuc 82.7 6.9 0.00015 41.1 9.3 76 30-111 18-94 (432)
174 KOG1035 eIF-2alpha kinase GCN2 81.4 2.7 5.9E-05 48.7 5.9 116 144-267 928-1056(1351)
175 PRK07218 replication factor A; 81.3 12 0.00026 39.2 10.2 83 11-114 58-148 (423)
176 KOG3108 Single-stranded DNA-bi 80.6 13 0.00028 36.3 9.5 74 30-110 69-143 (265)
177 cd05694 S1_Rrp5_repeat_hs2_sc2 80.3 10 0.00022 29.3 7.3 46 33-89 7-53 (74)
178 PRK07459 single-stranded DNA-b 80.1 23 0.0005 30.2 10.0 52 61-115 46-104 (121)
179 PRK07080 hypothetical protein; 79.9 2.3 5.1E-05 42.2 4.3 49 218-267 153-202 (317)
180 PRK13150 cytochrome c-type bio 79.1 31 0.00067 31.0 10.7 76 27-120 55-135 (159)
181 PRK12292 hisZ ATP phosphoribos 77.9 1.7 3.6E-05 45.1 2.8 44 373-438 275-319 (391)
182 PRK13254 cytochrome c-type bio 77.9 33 0.00072 30.5 10.6 86 12-119 38-127 (148)
183 PRK12366 replication factor A; 76.0 14 0.0003 41.0 9.3 82 11-108 63-154 (637)
184 TIGR00471 pheT_arch phenylalan 75.5 17 0.00037 39.5 9.8 115 149-266 362-491 (551)
185 PRK06386 replication factor A; 74.6 45 0.00098 34.1 11.9 87 12-120 108-202 (358)
186 TIGR00617 rpa1 replication fac 74.5 26 0.00057 38.5 11.0 95 10-117 179-287 (608)
187 PRK13165 cytochrome c-type bio 74.3 56 0.0012 29.4 11.0 76 27-120 55-135 (160)
188 PRK12421 ATP phosphoribosyltra 74.0 2 4.2E-05 44.6 2.0 47 373-441 282-329 (392)
189 PRK07218 replication factor A; 73.6 38 0.00082 35.5 11.3 77 29-117 172-256 (423)
190 PF15072 DUF4539: Domain of un 72.8 15 0.00033 29.4 6.4 55 33-92 6-60 (86)
191 PRK00036 primosomal replicatio 72.3 13 0.00029 31.0 6.2 51 61-115 49-99 (107)
192 PRK07211 replication factor A; 71.8 24 0.00053 37.5 9.5 79 29-116 171-260 (485)
193 TIGR00643 recG ATP-dependent D 71.7 27 0.00058 38.6 10.4 73 27-109 30-107 (630)
194 PRK07135 dnaE DNA polymerase I 71.2 12 0.00026 43.2 7.6 62 29-96 897-962 (973)
195 PLN02265 probable phenylalanyl 69.9 24 0.00052 38.7 9.4 112 151-265 399-527 (597)
196 TIGR00344 alaS alanine--tRNA l 68.7 27 0.00059 40.0 9.7 92 154-262 2-104 (851)
197 COG3689 Predicted membrane pro 68.5 24 0.00052 34.2 7.8 88 24-117 170-264 (271)
198 PRK08402 replication factor A; 68.2 32 0.00068 35.2 9.2 86 12-112 63-159 (355)
199 PRK02801 primosomal replicatio 66.2 22 0.00048 29.3 6.4 48 61-112 50-100 (101)
200 TIGR00442 hisS histidyl-tRNA s 66.0 6.3 0.00014 40.7 3.8 50 372-442 261-313 (397)
201 CHL00201 syh histidine-tRNA sy 65.6 7.1 0.00015 41.0 4.1 18 424-441 300-317 (430)
202 COG0013 AlaS Alanyl-tRNA synth 64.5 34 0.00074 38.9 9.2 29 424-452 223-251 (879)
203 cd04486 YhcR_OBF_like YhcR_OBF 63.2 61 0.0013 25.3 8.0 70 33-113 1-76 (78)
204 cd00673 AlaRS_core Alanyl-tRNA 62.5 21 0.00047 34.0 6.2 97 152-265 2-109 (232)
205 PLN02734 glycyl-tRNA synthetas 60.8 3.2 6.9E-05 45.8 0.4 54 196-252 246-312 (684)
206 PF13567 DUF4131: Domain of un 60.5 55 0.0012 28.3 8.5 62 29-97 75-146 (176)
207 PRK13159 cytochrome c-type bio 59.7 1.3E+02 0.0028 26.9 10.5 86 12-120 38-128 (155)
208 KOG1637 Threonyl-tRNA syntheta 57.6 18 0.00039 37.9 5.1 113 148-265 192-324 (560)
209 PRK06642 single-stranded DNA-b 57.3 83 0.0018 28.0 8.8 36 80-115 72-117 (152)
210 COG1200 RecG RecG-like helicas 53.8 1.4E+02 0.003 33.1 11.3 78 27-113 58-139 (677)
211 PF12857 TOBE_3: TOBE-like dom 53.6 63 0.0014 23.5 6.3 50 33-89 6-56 (58)
212 cd05698 S1_Rrp5_repeat_hs6_sc5 52.8 92 0.002 23.0 7.4 48 33-89 3-54 (70)
213 PF00436 SSB: Single-strand bi 51.5 30 0.00065 27.9 4.8 33 80-112 66-104 (104)
214 PRK06752 single-stranded DNA-b 51.1 36 0.00079 28.4 5.3 36 80-115 65-106 (112)
215 cd04496 SSB_OBF SSB_OBF: A sub 51.0 40 0.00087 26.8 5.4 49 60-111 45-99 (100)
216 cd05705 S1_Rrp5_repeat_hs14 S1 50.8 36 0.00079 26.1 4.8 48 33-89 6-60 (74)
217 PRK07275 single-stranded DNA-b 49.5 38 0.00082 30.6 5.4 51 61-115 49-106 (162)
218 cd04452 S1_IF2_alpha S1_IF2_al 49.2 1.1E+02 0.0023 23.0 7.4 51 33-89 6-59 (76)
219 PF02091 tRNA-synt_2e: Glycyl- 48.9 13 0.00028 36.0 2.3 57 369-450 120-177 (284)
220 PF09104 BRCA-2_OB3: BRCA2, ol 48.0 2E+02 0.0043 25.4 9.5 87 27-116 16-103 (143)
221 PRK08486 single-stranded DNA-b 47.8 28 0.0006 32.1 4.3 37 80-116 67-109 (182)
222 PF15513 DUF4651: Domain of un 47.6 21 0.00045 26.8 2.7 22 149-170 2-23 (62)
223 PRK04036 DNA polymerase II sma 47.5 67 0.0015 34.5 7.8 63 28-94 152-216 (504)
224 CHL00192 syfB phenylalanyl-tRN 45.7 87 0.0019 35.2 8.6 109 151-266 400-530 (704)
225 PRK00448 polC DNA polymerase I 45.7 1.4E+02 0.0031 36.4 10.7 80 29-112 236-320 (1437)
226 cd00733 GlyRS_alpha_core Class 45.0 15 0.00033 35.3 2.1 57 369-450 121-178 (279)
227 cd00496 PheRS_alpha_core Pheny 44.7 14 0.0003 34.9 1.9 25 424-448 188-212 (218)
228 PRK06863 single-stranded DNA-b 44.7 36 0.00077 30.9 4.4 36 80-115 70-111 (168)
229 PRK09348 glyQ glycyl-tRNA synt 44.3 16 0.00034 35.3 2.1 59 369-451 125-183 (283)
230 TIGR00594 polc DNA-directed DN 43.9 42 0.00091 39.3 6.0 36 28-65 980-1021(1022)
231 PRK06253 O-phosphoseryl-tRNA s 43.7 25 0.00054 37.6 3.7 49 218-266 210-260 (529)
232 PRK06958 single-stranded DNA-b 43.2 41 0.00088 31.0 4.6 36 80-115 70-111 (182)
233 PF04057 Rep-A_N: Replication 43.1 1.5E+02 0.0032 24.4 7.6 62 47-113 39-100 (101)
234 PRK12293 hisZ ATP phosphoribos 43.0 15 0.00033 36.2 2.0 40 372-440 241-280 (281)
235 PRK06751 single-stranded DNA-b 42.0 46 0.00099 30.4 4.8 51 61-115 49-106 (173)
236 PRK08763 single-stranded DNA-b 41.9 41 0.00089 30.4 4.4 36 80-115 70-111 (164)
237 PRK00629 pheT phenylalanyl-tRN 40.5 1.1E+02 0.0024 34.8 8.6 110 151-266 489-622 (791)
238 TIGR00621 ssb single stranded 40.1 75 0.0016 28.6 5.9 36 80-115 69-110 (164)
239 cd05708 S1_Rrp5_repeat_sc12 S1 40.0 1.6E+02 0.0034 22.0 7.3 49 33-89 5-57 (77)
240 PRK06253 O-phosphoseryl-tRNA s 40.0 26 0.00055 37.5 3.1 32 424-455 317-350 (529)
241 cd05707 S1_Rrp5_repeat_sc11 S1 38.9 94 0.002 22.9 5.4 48 33-89 3-54 (68)
242 PRK05813 single-stranded DNA-b 38.5 3.1E+02 0.0068 26.0 10.0 81 28-115 7-103 (219)
243 PLN02972 Histidyl-tRNA synthet 38.3 22 0.00049 39.9 2.5 48 373-441 606-655 (763)
244 PF04046 PSP: PSP; InterPro: 37.8 43 0.00092 23.8 3.0 24 402-425 11-35 (48)
245 TIGR00472 pheT_bact phenylalan 37.7 1.1E+02 0.0023 35.0 7.9 105 156-266 498-629 (798)
246 PRK05813 single-stranded DNA-b 37.4 98 0.0021 29.4 6.4 84 29-116 109-211 (219)
247 PRK06293 single-stranded DNA-b 37.3 56 0.0012 29.4 4.5 36 80-115 61-102 (161)
248 TIGR00388 glyQ glycyl-tRNA syn 37.2 22 0.00048 34.4 2.0 59 369-452 122-181 (293)
249 TIGR01405 polC_Gram_pos DNA po 36.8 3.2E+02 0.007 32.8 11.7 81 28-113 6-92 (1213)
250 COG3390 Uncharacterized protei 36.5 1.9E+02 0.0041 26.7 7.7 61 30-94 46-110 (196)
251 PRK08059 general stress protei 35.8 1.5E+02 0.0033 25.1 6.9 65 33-108 10-78 (123)
252 PRK06386 replication factor A; 35.8 3E+02 0.0065 28.2 9.9 77 13-109 4-88 (358)
253 PF03843 Slp: Outer membrane l 35.2 3E+02 0.0065 24.7 8.9 67 25-97 30-108 (160)
254 cd05692 S1_RPS1_repeat_hs4 S1_ 35.2 1.7E+02 0.0037 21.0 6.9 48 33-89 3-54 (69)
255 PRK07252 hypothetical protein; 34.8 2E+02 0.0044 24.4 7.4 66 33-108 6-74 (120)
256 cd04472 S1_PNPase S1_PNPase: P 34.2 1.8E+02 0.0039 21.0 6.6 48 33-89 3-54 (68)
257 PRK07274 single-stranded DNA-b 33.7 69 0.0015 27.6 4.4 35 80-114 65-104 (131)
258 PRK00037 hisS histidyl-tRNA sy 33.7 37 0.0008 35.2 3.2 59 373-452 263-325 (412)
259 PRK05807 hypothetical protein; 33.5 2.9E+02 0.0063 23.9 8.3 65 33-109 8-75 (136)
260 PF03459 TOBE: TOBE domain; I 33.3 1.6E+02 0.0035 21.3 5.9 51 33-89 6-56 (64)
261 COG0072 PheT Phenylalanyl-tRNA 32.2 90 0.0019 34.7 6.0 114 149-267 351-488 (650)
262 PRK01584 alanyl-tRNA synthetas 31.9 29 0.00063 37.9 2.1 95 152-263 4-108 (594)
263 PRK13732 single-stranded DNA-b 30.7 91 0.002 28.5 4.8 38 80-117 72-117 (175)
264 PRK08182 single-stranded DNA-b 30.6 85 0.0018 27.8 4.5 36 80-115 72-113 (148)
265 KOG2298 Glycyl-tRNA synthetase 30.6 10 0.00023 39.6 -1.4 26 221-246 214-241 (599)
266 TIGR03683 A-tRNA_syn_arch alan 29.8 23 0.00051 40.8 1.0 77 152-244 59-145 (902)
267 cd04497 hPOT1_OB1_like hPOT1_O 29.1 3.6E+02 0.0077 23.3 8.2 95 12-117 4-108 (138)
268 smart00581 PSP proline-rich do 28.5 70 0.0015 23.3 2.9 24 402-425 15-39 (54)
269 cd04461 S1_Rrp5_repeat_hs8_sc7 28.3 2.6E+02 0.0057 21.4 6.6 48 33-89 17-68 (83)
270 cd05706 S1_Rrp5_repeat_sc10 S1 28.2 2.5E+02 0.0054 20.8 7.8 49 33-89 6-57 (73)
271 KOG3416 Predicted nucleic acid 28.0 1.7E+02 0.0038 25.2 5.6 67 12-91 5-73 (134)
272 TIGR00418 thrS threonyl-tRNA s 27.9 29 0.00064 37.6 1.3 17 425-441 442-458 (563)
273 COG0752 GlyQ Glycyl-tRNA synth 27.5 50 0.0011 31.7 2.6 61 369-453 126-186 (298)
274 PRK12420 histidyl-tRNA synthet 27.3 58 0.0013 34.0 3.4 50 373-441 279-331 (423)
275 PRK06763 F0F1 ATP synthase sub 27.1 1.4E+02 0.003 27.8 5.3 52 31-95 39-90 (213)
276 PRK13902 alaS alanyl-tRNA synt 27.0 28 0.00062 40.1 1.0 77 152-244 62-148 (900)
277 KOG1894 Uncharacterized conser 26.6 74 0.0016 31.9 3.6 73 156-230 111-200 (412)
278 cd04453 S1_RNase_E S1_RNase_E: 26.5 2.4E+02 0.0053 22.3 6.2 50 33-89 10-66 (88)
279 PF00575 S1: S1 RNA binding do 26.4 1.5E+02 0.0033 22.0 4.8 48 33-89 7-58 (74)
280 PRK09010 single-stranded DNA-b 25.9 1E+02 0.0022 28.2 4.3 36 80-115 72-116 (177)
281 PLN02530 histidine-tRNA ligase 25.3 62 0.0013 34.6 3.2 18 423-440 373-390 (487)
282 PRK08582 hypothetical protein; 24.6 2E+02 0.0044 25.1 5.8 64 33-108 8-75 (139)
283 PTZ00248 eukaryotic translatio 24.4 2.6E+02 0.0057 28.1 7.2 51 33-89 20-73 (319)
284 cd05691 S1_RPS1_repeat_ec6 S1_ 24.1 2.9E+02 0.0063 20.2 7.4 65 33-107 3-70 (73)
285 COG1098 VacB Predicted RNA bin 24.0 2E+02 0.0044 24.8 5.3 66 33-107 8-74 (129)
286 cd04477 RPA1N RPA1N: A subfami 23.9 83 0.0018 25.7 3.0 57 50-112 40-96 (97)
287 COG2176 PolC DNA polymerase II 23.5 2.8E+02 0.0061 33.0 7.8 80 30-113 240-324 (1444)
288 cd05689 S1_RPS1_repeat_ec4 S1_ 23.4 1.8E+02 0.0038 21.6 4.6 21 33-55 6-26 (72)
289 PRK03987 translation initiatio 23.0 2.8E+02 0.0062 27.0 7.0 67 33-107 11-80 (262)
290 PF15178 TOM_sub5: Mitochondri 22.8 77 0.0017 22.2 2.1 16 148-163 18-33 (51)
291 COG2024 Phenylalanyl-tRNA synt 22.6 43 0.00094 34.2 1.3 49 218-266 209-259 (536)
292 PRK12295 hisZ ATP phosphoribos 22.4 70 0.0015 32.9 2.8 46 373-438 323-370 (373)
293 cd05687 S1_RPS1_repeat_ec1_hs1 22.3 2.3E+02 0.0051 20.8 5.1 48 33-89 3-54 (70)
294 cd05702 S1_Rrp5_repeat_hs11_sc 22.2 3E+02 0.0065 20.4 5.7 48 33-89 3-56 (70)
295 cd00673 AlaRS_core Alanyl-tRNA 21.8 55 0.0012 31.3 1.7 21 422-442 211-232 (232)
296 PF03790 KNOX1: KNOX1 domain ; 21.5 79 0.0017 22.1 2.0 29 397-425 3-31 (45)
297 PF15490 Ten1_2: Telomere-capp 21.2 5.2E+02 0.011 22.0 14.0 87 12-110 8-94 (118)
298 PRK00252 alaS alanyl-tRNA synt 21.1 51 0.0011 37.9 1.6 97 152-265 5-112 (865)
299 TIGR00638 Mop molybdenum-pteri 21.0 3.4E+02 0.0073 19.7 6.7 51 33-89 8-58 (69)
No 1
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=3.8e-111 Score=882.89 Aligned_cols=457 Identities=88% Similarity=1.391 Sum_probs=422.0
Q ss_pred CCccccceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 4 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
..+++..+++|+++....+.+.+..|++|+|+|||+++|.+|+++|++|+|+++..+||||++++...++.+..+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~g 161 (565)
T PLN02603 82 AVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTG 161 (565)
T ss_pred cccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCC
Confidence 35677788999999844333446789999999999999999999999999999877899999877555666542239999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhh
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~ 163 (460)
|+|.|+|+|++++.+++.+||.++++++|++|++++|++.+.++.+++|.++|||+|++.+++++++||++++++|+||.
T Consensus 162 s~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~ 241 (565)
T PLN02603 162 ASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 241 (565)
T ss_pred CEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999999999877999888899999999999999999999999999999999999999
Q ss_pred hCCceeecCceeecCCCCCCCCceeeec---------------------------cccCCccccccccHHHHHHHHhcCC
Q 012612 164 ENGFIWISSPIITASDCEGAGEQFCVTT---------------------------LDFFEKPAFLTVSGQLNAETYATAL 216 (460)
Q Consensus 164 ~~gF~EV~TPiL~~~~~eg~~~~F~v~~---------------------------~~~~~~~~~L~~Spql~l~l~~~g~ 216 (460)
++||+||+||+|++++|||+++.|.|++ .+||++++||++|||||||++++|+
T Consensus 242 ~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l 321 (565)
T PLN02603 242 ENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATAL 321 (565)
T ss_pred HCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcc
Confidence 9999999999999999999999998864 2589999999999999999999999
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
+|||+||||||||+++|+|||+||||||+||+|+|++|+|+++|++|+++++.+.+++.+++++.+.+.+.++.+.+++.
T Consensus 322 ~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~ 401 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDV 401 (565)
T ss_pred cceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988887777788888888
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeec
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 376 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl 376 (460)
++.||++|+|+||+++|++.+.+++...+||.+|+.++|++|.+.++..+|+||+|||.+++||||+.+++++++++|||
T Consensus 402 ~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDL 481 (565)
T PLN02603 402 VEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDM 481 (565)
T ss_pred cCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEE
Confidence 88899999999999999988766665678999999999999998776447999999999999999988878889999999
Q ss_pred ccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCC
Q 012612 377 LVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456 (460)
Q Consensus 377 ~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~ 456 (460)
++||+|||+||++|+|+++++.+++++.|+++++|+|||++++||+|||||||||||||+||+||.+|||||++|||+++
T Consensus 482 l~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g 561 (565)
T PLN02603 482 LVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPG 561 (565)
T ss_pred EecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccC
Q 012612 457 SVEF 460 (460)
Q Consensus 457 ~~~~ 460 (460)
+|++
T Consensus 562 ~~~~ 565 (565)
T PLN02603 562 SAEF 565 (565)
T ss_pred CCCC
Confidence 9975
No 2
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-111 Score=847.57 Aligned_cols=428 Identities=47% Similarity=0.792 Sum_probs=394.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (460)
.+++++|+.+. ..++.|+|+|||+++|++|+++|+.|||++|+ ||||++++. ..++ +++ |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788899764 33489999999999999999999999999987 999998743 2345 678 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC-hhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhC
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~-~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (460)
.|+|+|++++.+.|.+||++++|+|++++.+++|++++.++ +++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999889999999999999999667999999995 99999999999999999999999999999999999999
Q ss_pred CceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
||+||+||+|+++++||++++|.| +||+.++||+||||||||+++++++|||+|||+||+|+++|+|||.||||+|.
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld~ 228 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDP 228 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceecCCCCCcchhhhHheecc
Confidence 999999999999999999999999 89999999999999999988888999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccc
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 325 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~ 325 (460)
||+|++++|+|+++|+||+++++.+.++|..++++++. +.. .++.....||+||+|+||+++|++.+.+. ++
T Consensus 229 Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~---~l~~~~~~pf~ritY~eAieiL~~~~~e~---~~ 300 (435)
T COG0017 229 EMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNS---ELKRPESAPFPRITYKEAIEILEEKGFEK---VE 300 (435)
T ss_pred eeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cch---hhcccccCCccEEEHHHHHHHHHhcCCcc---cC
Confidence 99999999999999999999999999999988877753 111 12221246899999999999999876542 78
Q ss_pred cccccchhhhcccccccccCccEEEEeCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc
Q 012612 326 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 404 (460)
Q Consensus 326 ~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 404 (460)
||+|+++++|++|.++++. .|+||+|||.+++||||+.++|+ +++.+|||++||+|||+|||||+|+++.|.+++++.
T Consensus 301 ~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~ 379 (435)
T COG0017 301 WGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEK 379 (435)
T ss_pred CCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHHc
Confidence 9999999999999988764 57999999999999999988876 799999999999889999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 405 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 405 ~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
|+++++|+|||++++||+|||||||||+|||+|++||.+||||++||||+++++.+
T Consensus 380 gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r~~p 435 (435)
T COG0017 380 GLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435 (435)
T ss_pred CCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 3
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=2.1e-107 Score=852.32 Aligned_cols=432 Identities=53% Similarity=0.962 Sum_probs=394.6
Q ss_pred CCCCCEEEEEEEEeeeccCC--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCC-----
Q 012612 26 DRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS----- 98 (460)
Q Consensus 26 ~~~~~~V~v~GwV~~~R~~g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~----- 98 (460)
++.|+.|+|+|||+++|++| +++|++|||++|...+|||++.+...++.+++ |+.|++|.|+|+|+.++.+
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~--l~~gs~v~v~G~v~~~~~~~~n~~ 155 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK--CGVGCCFRFTGKLIISPVQNENKK 155 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--CCCccEEEEEEEEEcCCccccCcC
Confidence 56799999999999999987 49999999999877899999765445667778 9999999999999987533
Q ss_pred ---CceEEEEE-----eEEEEEecCC-C-CCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCce
Q 012612 99 ---KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (460)
Q Consensus 99 ---~~~~El~~-----~~i~ils~~~-~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~ 168 (460)
++.+||.+ ++++||+++. + .+|++++.++.+++|++||||+|++.++++||+||++..++|+||.++||+
T Consensus 156 g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~ 235 (586)
T PTZ00425 156 GLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFL 235 (586)
T ss_pred CCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 35699998 7999999983 2 489998889999999999999999999999999999999999999999999
Q ss_pred eecCceeecCCCCCCCCceeeecc--------------------------------------------------------
Q 012612 169 WISSPIITASDCEGAGEQFCVTTL-------------------------------------------------------- 192 (460)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~v~~~-------------------------------------------------------- 192 (460)
||+||+|++++|||+++.|.|++.
T Consensus 236 eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 315 (586)
T PTZ00425 236 YIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLI 315 (586)
T ss_pred EeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999998642
Q ss_pred ----ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 193 ----DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 193 ----~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
+||++++||+||||||||++++|++|||+||||||||+++|+||+|||||||+||+|.+++++|+++|++|+++++
T Consensus 316 ~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~ 395 (586)
T PTZ00425 316 DYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIG 395 (586)
T ss_pred cccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccE
Q 012612 269 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 348 (460)
Q Consensus 269 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~ 348 (460)
.+.+++..++.+.+.....++.+.++..++.||++|||+||+++|++.+..++...+||.++..++|++|.+.++. .|+
T Consensus 396 ~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~~~~-~Pv 474 (586)
T PTZ00425 396 YVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFK-KPV 474 (586)
T ss_pred HHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHHhcC-CcE
Confidence 9999888888776543334566677766778999999999999999876544445789999999999999986544 799
Q ss_pred EEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcce
Q 012612 349 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 349 ~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~ 428 (460)
||+|||.+++|||++.++++..+++|||++||+|||+|||+|+|+++.+.+++++.|+++++|+|||++++||+||||||
T Consensus 475 FItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgGf 554 (586)
T PTZ00425 475 IVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGF 554 (586)
T ss_pred EEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCceE
Confidence 99999999999999888777889999999999899999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
|||+|||+||+||.+|||||++|||++++|.|
T Consensus 555 GLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 555 GLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred EEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 99999999999999999999999999999986
No 4
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.6e-106 Score=847.79 Aligned_cols=451 Identities=57% Similarity=0.975 Sum_probs=402.3
Q ss_pred CccccceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCC--eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC
Q 012612 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (460)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~--~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (460)
-++|..+.+|++|....+.+.++.|+.|+|+|||+++|.+|| ++|++|||+++.+.||||++++.. ...+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCC
Confidence 345778889999986555566789999999999999999985 899999999965569999986532 22245 999
Q ss_pred CcEEEEEeeEeecCC---CCceEEEEEeEEEEEecCCC-CCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHH
Q 012612 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (460)
Q Consensus 83 g~~V~V~G~v~~~~~---~~~~~El~~~~i~ils~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (460)
|++|.|+|+|+.++. .++++||.+++|.|||+|.+ ++|++.+.++.+++|+++|||+|++.++++|++||.+.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998764 35689999999999999974 59998888899999999999999999999999999999999
Q ss_pred HHhhhhCCceeecCceeecCCCCCCCCceeeecc----------------------------------------------
Q 012612 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTL---------------------------------------------- 192 (460)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~---------------------------------------------- 192 (460)
|+||.++||+||+||+|++++|||+++.|.|++.
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 9999999999999999999999999999998431
Q ss_pred -----------------------------------------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCC
Q 012612 193 -----------------------------------------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 231 (460)
Q Consensus 193 -----------------------------------------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~ 231 (460)
+|||+++||+||||||||++++|++|||+||||||||++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s 341 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENS 341 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCC
Confidence 699999999999999999988999999999999999999
Q ss_pred CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHH
Q 012612 232 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 311 (460)
Q Consensus 232 ~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~ 311 (460)
+|+||||||||||+||+|.|++|+|+++|+||+++++.+.+++..++++..........+.++...+.||+||+|.||++
T Consensus 342 ~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~ 421 (572)
T PLN02221 342 HTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIE 421 (572)
T ss_pred CCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHH
Confidence 99999999999999999999999999999999999999998888777665432222344556555678999999999999
Q ss_pred HHHHH---ccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHH
Q 012612 312 LLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 388 (460)
Q Consensus 312 ~l~~~---~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~ 388 (460)
+|++. |.+++...+||.|++.++|++|.+.++. +|+||+|||..++||||+.++++..+++|||+++|+|||++|+
T Consensus 422 ~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~ 500 (572)
T PLN02221 422 LLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGS 500 (572)
T ss_pred HHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEECCHH
Confidence 99884 4444434679999999999999886554 8999999999999999877777778899999999999999999
Q ss_pred HhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 389 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 389 ~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
+|+|+++.+.+++++.|+++++++|||++++||+|||||||||+|||+||++|.+|||||++|||++++|..
T Consensus 501 ~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 501 QREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863
No 5
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=1.5e-106 Score=838.62 Aligned_cols=441 Identities=57% Similarity=0.974 Sum_probs=397.5
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEEEEe
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V~G 90 (460)
+++++... ..++.|++|+|+|||+++|.+|+++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 34555542 1246799999999999999999999999999994446999998763 22455677 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEEecCC-CCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCcee
Q 012612 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~ils~~~-~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~E 169 (460)
++++++.+++++||.+++++|||+|. ..+|++.+.+++++++++||||+|++.++++|++||+|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766789999999999999997 35899988889999999999999999999999999999999999999999999
Q ss_pred ecCceeecCCCCCCCCceeeecc------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCcccee
Q 012612 170 ISSPIITASDCEGAGEQFCVTTL------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 243 (460)
Q Consensus 170 V~TPiL~~~~~eg~~~~F~v~~~------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~l 243 (460)
|+||+|+++++||++++|.|++. +||++++||+||||+|||++++|++||||||||||||+++++|||||||||
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 237 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMI 237 (453)
T ss_pred ecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhccc
Confidence 99999999999999999988532 289999999999999999888999999999999999999889999999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccc
Q 012612 244 EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 323 (460)
Q Consensus 244 E~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~ 323 (460)
||||+|++++|+|+++|++|+++++.+.+.+..+++..+.....++...+++.++.+|++++|.||+++|++.+..++..
T Consensus 238 e~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~~ 317 (453)
T TIGR00457 238 EPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEYE 317 (453)
T ss_pred eeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcCC
Confidence 99999999999999999999999999998877666665544444566677778889999999999999999986554445
Q ss_pred cccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHH
Q 012612 324 VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 403 (460)
Q Consensus 324 ~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~ 403 (460)
..||.+|+.++|++|++.++. .|+||+|||.+++|||++.++++++++||||+++|+|||+|||+|+|+++++.+++++
T Consensus 318 ~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~ 396 (453)
T TIGR00457 318 DFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKE 396 (453)
T ss_pred CCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHH
Confidence 679999999999999987665 7999999999999999877767789999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 404 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 404 ~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
.|++++.++|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 397 ~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~ 452 (453)
T TIGR00457 397 MGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNIN 452 (453)
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999985
No 6
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=6.7e-106 Score=834.73 Aligned_cols=439 Identities=62% Similarity=1.066 Sum_probs=400.0
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V 88 (460)
+.+++++... ++.|++|+|+|||+++|.+||++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4568888643 578999999999999999999999999999975 888776542 34667777 999999999
Q ss_pred EeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCce
Q 012612 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (460)
Q Consensus 89 ~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~ 168 (460)
+|++.+++++++++||.+++++|||+|...+|++.+.+++++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799999989999999999999999999999999999999999999999999
Q ss_pred eecCceeecCCCCCCCCceeeecc------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccce
Q 012612 169 WISSPIITASDCEGAGEQFCVTTL------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWM 242 (460)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~v~~~------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~ 242 (460)
||+||+|+++++||++++|.|++. +||+.++||+||||+|||++++|++|||||+||||||+++++||||||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~ 233 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWM 233 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeeccccCCCCCccccccccc
Confidence 999999999999999999988543 69999999999999999988899999999999999999999999999999
Q ss_pred eeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc
Q 012612 243 IEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 322 (460)
Q Consensus 243 lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~ 322 (460)
||||++|.|++++|+++|+||+++++.+.+++..++++.+.+.+.+..+.++..++.||+++||.||++++++.+.+++.
T Consensus 234 lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~~~~~ 313 (450)
T PRK03932 234 IEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEF 313 (450)
T ss_pred cceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999888778887776655555555555566799999999999999988776655
Q ss_pred ccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHH
Q 012612 323 LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 402 (460)
Q Consensus 323 ~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~ 402 (460)
...||.+++...|++|.++.+. .|+||+|||.+++|||++.++++++++||||++||+|||++|++|+|+++++.++++
T Consensus 314 ~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~ 392 (450)
T PRK03932 314 PVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIK 392 (450)
T ss_pred CCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHH
Confidence 5589999999999999885555 799999999999999987766668999999999999999999999999999999999
Q ss_pred HcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 403 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 403 ~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
+.|+++++++||+++++||||||||||||||||+||+||.+|||||++|||++++|.
T Consensus 393 ~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 393 ELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999985
No 7
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=4.4e-106 Score=845.76 Aligned_cols=450 Identities=47% Similarity=0.877 Sum_probs=408.6
Q ss_pred CccccceeeeccccCCccCCCCCCCCEEEEEEEEeeecc-----------------------------------------
Q 012612 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----------------------------------------- 43 (460)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~----------------------------------------- 43 (460)
..||+.|+.++-|....++|...+|+.|+|.|||++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 468999999999999888888999999999999987542
Q ss_pred -----------------------------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEee
Q 012612 44 -----------------------------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 44 -----------------------------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~ 94 (460)
+|+++||+||||+|.+++|||++++...+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 338899999999998889999987644332 45 999999999999998
Q ss_pred cCC--CCceEEEEEeEEEEEecCCC-CCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeec
Q 012612 95 SQG--SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (460)
Q Consensus 95 ~~~--~~~~~El~~~~i~ils~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~ 171 (460)
++. .++.+||.+++|.||+++.. ++|++++.+++|++|++||||+|++.++++|++||++.+++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 36789999999999999863 599998888999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCCCCceeeecc-----------------------------------------------------------
Q 012612 172 SPIITASDCEGAGEQFCVTTL----------------------------------------------------------- 192 (460)
Q Consensus 172 TPiL~~~~~eg~~~~F~v~~~----------------------------------------------------------- 192 (460)
||+|++++|||+++.|.|++.
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999999887631
Q ss_pred ---------------------------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 193 ---------------------------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 193 ---------------------------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
+||++++||+||||||||++++||+|||+||||||||+++|.|||+||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 58999999999999999988899999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHc-ccccccc
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLV 324 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~-~~~~~~~ 324 (460)
||+|.|++|+|+++|+||+++++.+.++|..++++.+........+.++..+..||+||||.||+++|++.+ .+++...
T Consensus 419 Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~ 498 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKP 498 (633)
T ss_pred eehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999988888877644433445566666778999999999999998763 3444456
Q ss_pred ccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc
Q 012612 325 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 404 (460)
Q Consensus 325 ~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 404 (460)
+||.||+.++|++|++.++. .|+||+|||.+++||||+.++++.++++|||+++|+|||+||++|+|+++.+.+++++.
T Consensus 499 ~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~ 577 (633)
T PLN02532 499 EWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEEL 577 (633)
T ss_pred ccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHc
Confidence 89999999999999987555 89999999999999999888888899999999999899999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 405 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 405 ~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|+++++|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 578 Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 578 GLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999985
No 8
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=2e-101 Score=796.51 Aligned_cols=418 Identities=29% Similarity=0.485 Sum_probs=373.1
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEEEEE
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (460)
.+++|... +.|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.+++ |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45666543 6789999999999999999999999999997 4999998653 23556777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCcccc---ChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCC
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~---~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (460)
|+|+.++...+++||.+++++|||+|..++|+..+.. +.+...++||||+|++.++++|++||+|++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999976788876543 4566669999999999999999999999999999999999
Q ss_pred ceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 167 FIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
|+||+||+|+++++||++++|++ +||+.++||+||||+||| ++++|++||||||||||||+++++|||||||||||
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v---~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~ 228 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI---TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDI 228 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee---EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeee
Confidence 99999999999999999999988 689999999999999998 67899999999999999999988899999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccc
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 325 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~ 325 (460)
|++|.|++|+|+++|+||+++++.+.+++..+++..+.. + .....||+|+||.||++++++.|+. ..
T Consensus 229 e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~~pf~rity~eA~~~l~~~g~~----~~ 295 (428)
T TIGR00458 229 EMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPEGKFVRLTYDEAIEMANAKGVE----IG 295 (428)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC----CC
Confidence 999999999999999999999999998876555433210 0 0124589999999999999987764 46
Q ss_pred cccccchhhhcccccccccCccEEEEeCCCcCccccccccC-CccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc
Q 012612 326 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 404 (460)
Q Consensus 326 ~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 404 (460)
||.+++..+|+.|.+.+ . .|+||+|||.+++|||++.++ ++++++||||+++|. ||+||++|+|+++.+++++++.
T Consensus 296 ~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g~-Ei~~g~~r~~~~~~l~~~~~~~ 372 (428)
T TIGR00458 296 WGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYRDL-EISSGAQRIHLHDLLVERIKAK 372 (428)
T ss_pred CccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEEeCCe-EEeeCchhcCCHHHHHHHHHHc
Confidence 88899999999998765 3 799999999999999976654 457999999999995 9999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 405 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 405 ~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++++.++|||+|++||||||||||||+|||+|++||.+|||||++|||+++++.
T Consensus 373 g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r~~ 427 (428)
T TIGR00458 373 GLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKRLT 427 (428)
T ss_pred CCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999974
No 9
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.7e-101 Score=796.54 Aligned_cols=422 Identities=31% Similarity=0.540 Sum_probs=376.6
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (460)
++|+++|+... ..|+.|+|+|||+++|.+||++|++|||++|. ||+|++.+. ..++.++. |++||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68999999874 67999999999999999999999999999974 999998763 23555777 99999999
Q ss_pred EEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhh
Q 012612 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (460)
Q Consensus 88 V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (460)
|+|++.+++..++++||.+++|+|||+|..++|+..+. .+.+.++++||||+|++.++++|++||+|++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877778999999999999998668875432 356778899999999999999999999999999999999
Q ss_pred CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCcccee
Q 012612 165 NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 243 (460)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~l 243 (460)
+||+||+||+|++++++|+++.|++ +||+.++||+||||+||| ++++|++||||||||||||++++.|||||||||
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~---~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 229 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI---DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSI 229 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE---EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhhee
Confidence 9999999999999999999999988 789999999999999998 556789999999999999999888999999999
Q ss_pred eeeecCCC-HHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc
Q 012612 244 EPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 322 (460)
Q Consensus 244 E~e~~~~~-~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~ 322 (460)
||||+|.+ ++++|+++|+||+++++.+.+++..++++.+.. +. ..+.||+++||.||++++++.|.+
T Consensus 230 E~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~~-~~~~~f~rit~~eA~~~l~~~~~~--- 297 (437)
T PRK05159 230 DVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------LP-VPETPIPRITYDEAIEILKSKGNE--- 297 (437)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------CC-cCCCCceEeEHHHHHHHHHHcCCC---
Confidence 99999998 999999999999999999988776665544321 10 234689999999999999887753
Q ss_pred ccccccccchhhhccccccc----ccCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHHH
Q 012612 323 LVKWGCDLQSEHERYLTEEA----FGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYL 397 (460)
Q Consensus 323 ~~~~~~~l~~~~e~~l~~~~----~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~ 397 (460)
..||.+++...|+.+.+.+ .. .|+||+|||.+++|||++.+++ +++++||||+++|+ ||+||++|+||++++
T Consensus 298 -~~~~~~~~~~~e~~l~~~~~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~ 374 (437)
T PRK05159 298 -ISWGDDLDTEGERLLGEYVKEEYGS-DFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDML 374 (437)
T ss_pred -CCCCCCCCcHHHHHHHHHHhhhcCC-ceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCE-EEeeCeEEcCCHHHH
Confidence 4578889888888875432 22 3899999999999999877654 46899999999996 999999999999999
Q ss_pred HHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 398 EGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 398 ~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+|||||++|||++++|.
T Consensus 375 ~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~ 436 (437)
T PRK05159 375 VESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHRLT 436 (437)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 10
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-100 Score=740.47 Aligned_cols=433 Identities=59% Similarity=0.988 Sum_probs=405.8
Q ss_pred cccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeec
Q 012612 16 DVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (460)
Q Consensus 16 ~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~ 95 (460)
++....+.+....|+.+++.|||+++|..|+++|++|+||++.+++|||++++ ..+. +.+|++|.|+|.+..+
T Consensus 7 ~v~~~~~~~~~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~ 79 (446)
T KOG0554|consen 7 SVLSGRILGHPRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVS 79 (446)
T ss_pred eeeccccccCCCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEec
Confidence 33333333456789999999999999999999999999999999999999983 2344 9999999999999999
Q ss_pred CCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCcee
Q 012612 96 QGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175 (460)
Q Consensus 96 ~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL 175 (460)
+.+++.+|+.+++|.+++.+++++|++++.++++++|+..||+.|++...+++|+||.+..+++.||.+++|++|+||+|
T Consensus 80 ~~~~q~iel~~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPii 159 (446)
T KOG0554|consen 80 KGAKQQIELNAEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPII 159 (446)
T ss_pred cchheeeeeeeeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEe
Confidence 77888999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCceeeecc-----ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 176 TASDCEGAGEQFCVTTL-----DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 176 ~~~~~eg~~~~F~v~~~-----~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
|+++|||+++.|.|++. +||++++||++|.|||++.|+++++|||.+||+||+|+++++|||.||||+|.|+||+
T Consensus 160 Tt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~ 239 (446)
T KOG0554|consen 160 TTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFA 239 (446)
T ss_pred eccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHH
Confidence 99999999999999865 7999999999999999999999999999999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHc-ccccccccccc
Q 012612 251 D-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGC 328 (460)
Q Consensus 251 ~-~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~-~~~~~~~~~~~ 328 (460)
+ ++|+|+++|.+++++++.++++|.+++++..++..+..+..++.....+|.+++|.||+++|++.. ..++.+++||.
T Consensus 240 ~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~ 319 (446)
T KOG0554|consen 240 ESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGI 319 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcccccccCccccc
Confidence 8 999999999999999999999999999998888777888888888888899999999999999987 66777889999
Q ss_pred ccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCc
Q 012612 329 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 408 (460)
Q Consensus 329 ~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~ 408 (460)
+|++++|++|++.+++ .||||+|||..++||||+.++++.++.+|||++||+|||+|||+|+.+ .+++++.|..+
T Consensus 320 ~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~ 394 (446)
T KOG0554|consen 320 DLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER----KARLKERGLTR 394 (446)
T ss_pred ccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh----HHHHHhcCCCc
Confidence 9999999999998875 999999999999999999998888899999999999999999999988 56678899999
Q ss_pred ccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 409 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 409 ~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
++++|||++++||.+||||||||+||++++++|.+||||||||||.+++++.
T Consensus 395 ~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 395 EELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred cccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 9999999999999999999999999999999999999999999999998863
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-98 Score=785.27 Aligned_cols=430 Identities=25% Similarity=0.409 Sum_probs=366.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc----cchhhHhccCCCCCcEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGASI 86 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~----~~~~~~~~~~l~~g~~V 86 (460)
.++|++|... ...|+.|+|+|||+++|.+|+++|++|||+++ +||+|++.+. ..++.++. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 5788888754 23799999999999999999999999999996 5999997542 12445667 9999999
Q ss_pred EEEeeEeecC-----CCCceEEEEEeEEEEEecCCCCCCCCcccc-----------ChhhhhccccccCCChhhhHHHHH
Q 012612 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (460)
Q Consensus 87 ~V~G~v~~~~-----~~~~~~El~~~~i~ils~~~~~~p~~~~~~-----------~~~~~r~~r~l~~R~~~~~~~~~~ 150 (460)
.|+|+|++.+ +..+++||++++++|||+|..++|+..++. +.+...++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999999742 345789999999999999987788865432 345555999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHH-hcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETY-ATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~-~~g~~rvfeI~~~FR~E 229 (460)
||.|++++|+||.++||+||+||+|+++++||++++|.| +||+.++||+||||+|||++ ++|++||||||||||||
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE 292 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL---EYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSE 292 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc---ccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCC
Confidence 999999999999999999999999999999999999998 79999999999999999855 57899999999999999
Q ss_pred CCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccc--------c--------------
Q 012612 230 NSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWI--------E-------------- 286 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~--------~-------------- 286 (460)
+++|+|||||||||||||+|. +|+++|+++|+||.++++.+.+.+ .+++...... .
T Consensus 293 ~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~-~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~ 371 (550)
T PTZ00401 293 NSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT-KELKAVCQQYPFEPLVWKLTPERMKELGVGVIS 371 (550)
T ss_pred CCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccc-hhhhhhccccccccccccccHHHHHhcCCCccc
Confidence 999999999999999999986 799999999999999999887652 2322221000 0
Q ss_pred ------chhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccc---cccccCccEEEEe-CCCc
Q 012612 287 ------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EEAFGGCPVIVSD-YPKE 356 (460)
Q Consensus 287 ------~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~---~~~~~~~p~~I~~-fP~~ 356 (460)
..+.+.+.. .+.+|+||+|.||+++|++.+. ....|+.|++...|+.|. ++.++ .|+||+| ||..
T Consensus 372 ~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~~E~~L~~~v~~~~~-~~~fI~d~yP~~ 446 (550)
T PTZ00401 372 EGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTTNEKLLGKLVKERYG-TDFFISDRFPSS 446 (550)
T ss_pred ccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCchHHHHHHHHHHHhcC-CCEEEECCCChh
Confidence 001112221 3567999999999999999752 224678899999998874 33334 7999998 9999
Q ss_pred CccccccccC-CccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHH
Q 012612 357 IKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 435 (460)
Q Consensus 357 ~~pf~~~~~~-~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL 435 (460)
++|||++.++ ++++++||||+++| +||+||++|+||++.|.+++++.|++++.++|||+|++||+|||||||||+|||
T Consensus 447 ~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERL 525 (550)
T PTZ00401 447 ARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERV 525 (550)
T ss_pred hCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHH
Confidence 9999976554 55799999999999 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCCCCcc
Q 012612 436 VQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 436 ~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
+|++||.+|||||++|||+++|+.
T Consensus 526 vM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 526 VMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred HHHHhCCCcHheeecCCCCCCCCC
Confidence 999999999999999999999974
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=5.3e-98 Score=783.79 Aligned_cols=426 Identities=26% Similarity=0.432 Sum_probs=366.7
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc-----chhhHhccCCCCCc
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGA 84 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~-----~~~~~~~~~l~~g~ 84 (460)
..+.|.+|... +.|+.|+|+|||+++|.+|+++|++|||+++ +||+|+..+.. .++.+.. |+.||
T Consensus 68 ~~~~i~~l~~~------~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es 137 (530)
T PLN02850 68 EWTDVSDLGEE------LAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRES 137 (530)
T ss_pred eEeEhhhcchh------hCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCC
Confidence 34777788653 7899999999999999999999999999985 59999976532 1334667 99999
Q ss_pred EEEEEeeEeecC----CCCceEEEEEeEEEEEecCCCCCCCCccc--------------------cChhhhhccccccCC
Q 012612 85 SIWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPR 140 (460)
Q Consensus 85 ~V~V~G~v~~~~----~~~~~~El~~~~i~ils~~~~~~p~~~~~--------------------~~~~~~r~~r~l~~R 140 (460)
+|.|+|+|++++ +.++++||.+++|+|||+|...+|+..++ .+.+...+|||||+|
T Consensus 138 ~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR 217 (530)
T PLN02850 138 VVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR 217 (530)
T ss_pred EEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc
Confidence 999999998532 23458999999999999998778876543 123455599999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCce
Q 012612 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNV 219 (460)
Q Consensus 141 ~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rv 219 (460)
++.++++|++||.|++++|+||.++||+||+||+|+++++||++++|.| +||++++||+||||+||| ++++|++||
T Consensus 218 ~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rV 294 (530)
T PLN02850 218 TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRV 294 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999999999999999999999998 799999999999999998 567899999
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhc
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 298 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 298 (460)
||||||||||+++|.|||||||||||||+|. +|+|+|+++|+||++++..+.+.+..+++......+. ..+ +.++
T Consensus 295 feIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~---~~~-~~~~ 370 (530)
T PLN02850 295 FEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPF---EPL-KYLP 370 (530)
T ss_pred EEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCc---chh-hhcC
Confidence 9999999999999999999999999999998 5999999999999999999988776665443321110 111 1222
Q ss_pred CCCcccCHHHHHHHHHHHccccccccccccccchhhhccccc----ccccCccEEEEeCCCcCccccccccC-Cccceee
Q 012612 299 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE----EAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAA 373 (460)
Q Consensus 299 ~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~----~~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~ 373 (460)
++++++|.||+++|++.|+.. .++.|++...|+.|.. ++.. .++||+|||..++|||++.++ +++++++
T Consensus 371 -~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~-~~~ii~~yP~~~~pfY~~~~~~d~~~~~~ 444 (530)
T PLN02850 371 -KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGT-DFYILHRYPLAVRPFYTMPCPDDPKYSNS 444 (530)
T ss_pred -CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCC-CeEEEECCccccCchhccccCCCCCeEEE
Confidence 678999999999999988642 3566888888887743 3433 467789999999999876554 5579999
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccC
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr 453 (460)
|||+++| +||+||++|+||++.|+++++..|++++.++|||+|++||+|||||||||||||+||+||.+|||||++|||
T Consensus 445 fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR 523 (530)
T PLN02850 445 FDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPR 523 (530)
T ss_pred EEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCC
Confidence 9999999 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 012612 454 TPGSVE 459 (460)
Q Consensus 454 ~~~~~~ 459 (460)
+|+||.
T Consensus 524 ~p~rl~ 529 (530)
T PLN02850 524 DPQRLA 529 (530)
T ss_pred CCCCCC
Confidence 999974
No 13
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=9e-97 Score=774.86 Aligned_cols=440 Identities=20% Similarity=0.273 Sum_probs=378.7
Q ss_pred CCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc-----chhh
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQ 74 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~-----~~~~ 74 (460)
|++++|.++++++|+.+.|++ +.+..++.|+|+|||+++|.+||++|++|+|++| .||||++.+.. .|+.
T Consensus 79 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~ 156 (553)
T PLN02502 79 PYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEK 156 (553)
T ss_pred CCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHH
Confidence 889999999999999887743 4456788999999999999999999999999996 59999986532 2555
Q ss_pred H-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHH
Q 012612 75 V-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVAR 149 (460)
Q Consensus 75 ~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~ 149 (460)
+ +. |+.||+|.|+|++.+++++ ++||.+++|+|||+|. .|+|.+.+++ +...++||||++ ++..+++|+
T Consensus 157 ~~~~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r 230 (553)
T PLN02502 157 LHSL--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFR 230 (553)
T ss_pred HHhC--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHH
Confidence 5 35 9999999999999998865 8999999999999997 5676666653 444489999995 889999999
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccccc
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRA 228 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~ 228 (460)
+||+|+++||+||.++||+||+||+|+++.+++++.+|. +++++++.++||+||||||+| |+++|++|||||||||||
T Consensus 231 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRn 309 (553)
T PLN02502 231 TRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRN 309 (553)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeC
Confidence 999999999999999999999999999987766778996 455899999999999999986 789999999999999999
Q ss_pred CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc-----cccccccccccchhHhhhhhhhcCCCcc
Q 012612 229 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLSTVAERDFVQ 303 (460)
Q Consensus 229 E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (460)
|+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+. .++++..+|.+.++.+.+++..+.+|+.
T Consensus 310 E~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~ 388 (553)
T PLN02502 310 EGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA 388 (553)
T ss_pred CCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc
Confidence 9996 599999999999999999999999999999999999986653 3456667787788889999888888877
Q ss_pred -cCHHHHHHHHH----HHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeeccc
Q 012612 304 -LSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 378 (460)
Q Consensus 304 -i~~~ea~~~l~----~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~ 378 (460)
++++++.+.|. +.++.+.....||..++.+++.++.+.+ . +|+||+|||..++|||++..+++++++|||||+
T Consensus 389 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV~dyP~~~splak~~~~~p~~~erFELfi 466 (553)
T PLN02502 389 DLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFVLDHPVEMSPLAKPHRSKPGLTERFELFI 466 (553)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEEECCccccCcccccCCCCCCeEEEEEEEe
Confidence 88888876554 3455444445688888999999888765 4 799999999999999987667778999999999
Q ss_pred CCceeeecHHHhhhhHHHHHHHHHHc----CC-Ccc--cH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcccccc
Q 012612 379 PRIGELIGGSQREERLEYLEGRLDEL----KL-NRD--SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 379 ~G~~Ei~~g~~r~~~~~~~~~~~~~~----~~-~~~--~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~ 450 (460)
+|+ ||+||+++.||+.+|+++|... +. +.+ .+ ++||+|++||||||||||||||||+|+|||..|||||++
T Consensus 467 ~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~ 545 (553)
T PLN02502 467 NGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIA 545 (553)
T ss_pred CCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeec
Confidence 997 9999999999999988877532 21 112 23 669999999999999999999999999999999999999
Q ss_pred ccCCC
Q 012612 451 FPRTP 455 (460)
Q Consensus 451 FPr~~ 455 (460)
||+..
T Consensus 546 FP~~k 550 (553)
T PLN02502 546 FPAMK 550 (553)
T ss_pred CCcCC
Confidence 99875
No 14
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=2.5e-96 Score=768.42 Aligned_cols=430 Identities=20% Similarity=0.323 Sum_probs=358.7
Q ss_pred CCCccccceeeeccccCCccC----CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhH
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV 75 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~----~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~ 75 (460)
|++++|.++++++++.+.|++ .....++.|+|+|||+++|.+||++|++|+|++| +||+|++.+.. .++.+
T Consensus 23 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~ 100 (496)
T TIGR00499 23 PYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFD 100 (496)
T ss_pred CCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHH
Confidence 888999999999999887642 1124478899999999999999999999999996 49999987642 23344
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
+. .|+.||+|.|+|++.+++++ ++||.+++|++||+|. .|+|.+.+++ +...++||||+| ++.++++|++|
T Consensus 101 ~~-~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~R 175 (496)
T TIGR00499 101 EY-LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVR 175 (496)
T ss_pred Hh-cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 32 28999999999999998764 7999999999999997 5666666554 554589999999 57999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|++++|+||.++||+||+||+|+++.+++++++|.+ ++++++.++||+|||||||| |+++|++||||||||||||+
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~ 254 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEG 254 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ecccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCC
Confidence 99999999999999999999999998877767789975 34679999999999999986 78999999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHH
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 310 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~ 310 (460)
++ .||||||||||||++|+||+|+|+++|+||+++++.+.+++...+. + ....+..||+|+||.||+
T Consensus 255 ~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~--~----------~~~~~~~pf~rit~~eai 321 (496)
T TIGR00499 255 VD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYG--E----------LEIDFKKPFKRITMVEAI 321 (496)
T ss_pred CC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecC--c----------eeccCCCCceEEEHHHHH
Confidence 95 6999999999999999999999999999999999999866543221 1 001234578888888888
Q ss_pred HHHHH-Hcccc---------------------ccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCc
Q 012612 311 ELLIK-AKKKF---------------------EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 368 (460)
Q Consensus 311 ~~l~~-~~~~~---------------------~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~ 368 (460)
+++.+ .|+++ .....||..++..++.++.+.+ . +|+||+|||.+++||++...+++
T Consensus 322 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l-~-~P~fv~dyP~~~splak~~~~~p 399 (496)
T TIGR00499 322 KKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTL-I-QPTFITHYPAEISPLAKRNPSNP 399 (496)
T ss_pred HHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhcc-C-CCEEEECCchhcCcccccCCCCC
Confidence 86643 23221 1112345566677777776554 4 79999999999999976555566
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHH------HcCCCcccH--HHHHHHHhcCCCCCcceeccHHHHHHHHc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 440 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL~m~l~ 440 (460)
.+++||||+++|+ ||+||++|+||+++|+++++ +.|.+++.+ +|||+|++||||||||||||||||+|++|
T Consensus 400 ~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~GiGiDRLvMllt 478 (496)
T TIGR00499 400 EFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLT 478 (496)
T ss_pred CeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceEEEhHHHHHHHHh
Confidence 7999999999997 99999999999999999875 457776654 79999999999999999999999999999
Q ss_pred CCCCccccccccCCCC
Q 012612 441 GVENIRDAIPFPRTPG 456 (460)
Q Consensus 441 ~~~~Irdv~~FPr~~~ 456 (460)
|.+|||||++||+++.
T Consensus 479 g~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 479 DSKSIRDVILFPAMRP 494 (496)
T ss_pred CCCcHheeccCCCCCC
Confidence 9999999999999864
No 15
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-96 Score=764.83 Aligned_cols=429 Identities=21% Similarity=0.317 Sum_probs=354.1
Q ss_pred CCCccccceeeeccccCCccC----CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhH
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV 75 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~----~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~ 75 (460)
|++++|.++++++++...+.+ .....++.|+|+|||+++|.+|+++|++|||++| .||||++++.. .|+.+
T Consensus 24 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~ 101 (491)
T PRK00484 24 PYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAF 101 (491)
T ss_pred CCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHH
Confidence 788999999999999887643 1112247799999999999999999999999996 49999987632 36667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC---hhhhhccccccCC-ChhhhHHHHHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
++ |+.||+|.|+|+|.+++++ ++||.++++++||+|.. |+|.+.++ .+...++||||+| ++.++++|++|
T Consensus 102 ~~--l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~--plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~R 175 (491)
T PRK00484 102 KK--LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLR--PLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKR 175 (491)
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCC--CCCcccccccchhhhccceeeehhcCHHHHHHHHHH
Confidence 77 9999999999999998765 89999999999999974 55555444 3444489999997 78999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|++++|+||.++||+||+||+|+++.+++++++|.+ +.++++.++||+||||+||| ++++|++||||||||||||+
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t-~~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~ 254 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFIT-HHNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEG 254 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeee-ccccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCC
Confidence 99999999999999999999999998766666789964 44899999999999999986 78899999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHH
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 310 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~ 310 (460)
++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++ .+.+.+.. ..++.||+++||.||+
T Consensus 255 ~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~~----------~~~~~pf~rity~eai 321 (491)
T PRK00484 255 ID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGTE----------IDFGPPFKRLTMVDAI 321 (491)
T ss_pred CC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCEe----------ecCCCCceEEEHHHHH
Confidence 96 59999999999999999999999999999999999987653 23332210 0134588999999988
Q ss_pred HHHHH-----------------HccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 311 ELLIK-----------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 311 ~~l~~-----------------~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
+.+.. .++.......+|..++..++.++.+ .+. +|+||+|||.+++|||++.++++++++|
T Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~-~~~-~P~Fi~dyP~~~~pf~k~~~~~~~~~~r 399 (491)
T PRK00484 322 KEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEP-KLI-QPTFITDYPVEISPLAKRHREDPGLTER 399 (491)
T ss_pred HHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh-hcC-CcEEEECCChHHhhhhccCCCCCCeEEE
Confidence 76532 1111111112444455556665444 444 7999999999999999866667789999
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHHH------cCCCcc-cH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCc
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRD-SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 445 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~-~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~I 445 (460)
|||+++|+ ||+||++|.||++.|++++++ .|.++. .+ +|||+|++||||||||||||||||+|++||.+||
T Consensus 400 FdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiDRLvm~ltg~~~I 478 (491)
T PRK00484 400 FELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSI 478 (491)
T ss_pred EEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHHHHHHHHhCCCcH
Confidence 99999997 999999999999999998863 243332 24 6999999999999999999999999999999999
Q ss_pred cccccccCCCC
Q 012612 446 RDAIPFPRTPG 456 (460)
Q Consensus 446 rdv~~FPr~~~ 456 (460)
|||++||+++.
T Consensus 479 rdvi~FP~~~~ 489 (491)
T PRK00484 479 RDVILFPLMRP 489 (491)
T ss_pred HhcccCCCCCC
Confidence 99999999875
No 16
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-95 Score=762.98 Aligned_cols=429 Identities=20% Similarity=0.300 Sum_probs=351.6
Q ss_pred CCCccccceeeeccccCCccC--C--CCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchh-h
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE--G--LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-Q 74 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~--~--~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~-~ 74 (460)
|+.++|.++++++++.+.|++ + ....++.|+|+|||+++|.+||++|++|+|++| +||||++++. ..|. .
T Consensus 35 py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~ 112 (505)
T PRK12445 35 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQ 112 (505)
T ss_pred CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHH
Confidence 888999999999999887643 1 123477899999999999999999999999986 5999998653 2354 3
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHH
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARV 150 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~ 150 (460)
+++ |+.||+|.|+|++.+++++ ++||.++++++||+|. .|+|.+.++. +...++||||+| ++..+++|++
T Consensus 113 ~~~--l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~ 186 (505)
T PRK12445 113 FKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVV 186 (505)
T ss_pred Hhc--CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHH
Confidence 566 9999999999999998865 8999999999999997 5666665543 444489999999 6899999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E 229 (460)
||+|+++||+||.++||+||+||+|++..+++++.+|. +++++++.++||+||||+||| |+++|++||||||||||||
T Consensus 187 Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~-t~~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE 265 (505)
T PRK12445 187 RSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFI-THHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE 265 (505)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCccccee-cccccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCC
Confidence 99999999999999999999999999876655667894 556899999999999999985 8899999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHH
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 309 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea 309 (460)
++ +.||||||||||||++|+|++|+|+++|+||+++++.+.+.+... +.+.. + -+..||+++||.||
T Consensus 266 ~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~--~~~~~--------i--~~~~pf~rit~~ea 332 (505)
T PRK12445 266 GI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVT--YGEHV--------F--DFGKPFEKLTMREA 332 (505)
T ss_pred CC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhccccee--cCcee--------c--cCCCCceEEEHHHH
Confidence 99 899999999999999999999999999999999999987654321 11100 0 12347778888877
Q ss_pred HHHHHH-------------------HccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccc
Q 012612 310 IELLIK-------------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 370 (460)
Q Consensus 310 ~~~l~~-------------------~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~ 370 (460)
++.+.. .|+.......+|..+ .+....++++.+. +|+||+|||.+++|||++.++++++
T Consensus 333 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~vE~~l~-~P~Fv~dyP~~~splak~~~~~p~~ 410 (505)
T PRK12445 333 IKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIV-TEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEI 410 (505)
T ss_pred HHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHHHHHHhhcC-CCEEEECCCchhCcccccCCCCCCc
Confidence 766542 222211111122122 2333344555554 8999999999999999766666789
Q ss_pred eeeeecccCCceeeecHHHhhhhHHHHHHHHHH------cCCCcccH--HHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 371 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 371 ~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
++||||+++|+ ||+||++|.||+++|++++++ .|.++... +|||+|++||||||||||||||||+|++||.
T Consensus 411 ~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMlltg~ 489 (505)
T PRK12445 411 TDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNS 489 (505)
T ss_pred eEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHHHcCC
Confidence 99999999996 999999999999999999874 36554432 7899999999999999999999999999999
Q ss_pred CCccccccccCCCC
Q 012612 443 ENIRDAIPFPRTPG 456 (460)
Q Consensus 443 ~~Irdv~~FPr~~~ 456 (460)
+|||||++||+++.
T Consensus 490 ~sIrdvi~FP~~~~ 503 (505)
T PRK12445 490 HTIRDVILFPAMRP 503 (505)
T ss_pred CchheEecCCCCCC
Confidence 99999999999864
No 17
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-94 Score=729.27 Aligned_cols=411 Identities=26% Similarity=0.397 Sum_probs=339.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (460)
|+|+|.+|... ++|++|+++|||++.|++|+++|++|||.+|+ +|||++.+. ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999875 89999999999999999999999999999987 999999852 34777888 99999999
Q ss_pred EEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccc--cChhhhh-ccccccCCChhhhHHHHHHHHHHHH
Q 012612 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (460)
Q Consensus 88 V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~--~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~ 157 (460)
|+|+|.+++. .++++||.+++|+|||+|.+ +|++..+ ...+.+| +|||||||++.++..+++||+++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999998865 35799999999999999976 5665443 4555666 9999999999999999999999999
Q ss_pred HHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCC
Q 012612 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRH 236 (460)
Q Consensus 158 iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rH 236 (460)
+|+||+++||+||+||+|++|++||++| |.|+++.+.|+-+.|.||||+||| ||++||+|||||++|||+|+.+.+|+
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARD-fLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQ 229 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARD-FLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQ 229 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccc-cccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccC
Confidence 9999999999999999999999999999 889999888899999999999999 79999999999999999999999999
Q ss_pred CCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHH-----
Q 012612 237 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE----- 311 (460)
Q Consensus 237 l~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~----- 311 (460)
|||||+|+||+|.+-+|+|+++|+|+.++++.+.+.. ++.||+|+||+||++
T Consensus 230 -PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~----------------------l~~pFprmtY~eAm~~YGSD 286 (585)
T COG0173 230 -PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIE----------------------LKTPFPRMTYAEAMRRYGSD 286 (585)
T ss_pred -CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCCc----------------------cCCCcccccHHHHHHHhCCC
Confidence 9999999999999999999999999999999876432 112333333333322
Q ss_pred --------------------------------------------------------HHHHHccc---c---cc-----c-
Q 012612 312 --------------------------------------------------------LLIKAKKK---F---EF-----L- 323 (460)
Q Consensus 312 --------------------------------------------------------~l~~~~~~---~---~~-----~- 323 (460)
..+..|.+ + .. +
T Consensus 287 KPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi 366 (585)
T COG0173 287 KPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPI 366 (585)
T ss_pred CCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchH
Confidence 11111100 0 00 0
Q ss_pred -----------------ccccc------c--------cchh-----hhcccccccccCccEEEEeCCCc-----------
Q 012612 324 -----------------VKWGC------D--------LQSE-----HERYLTEEAFGGCPVIVSDYPKE----------- 356 (460)
Q Consensus 324 -----------------~~~~~------~--------l~~~-----~e~~l~~~~~~~~p~~I~~fP~~----------- 356 (460)
.+-|+ + +... -+.-|.++- ...++||+|||..
T Consensus 367 ~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~-~~~f~WVvDFPlfE~~ee~~~~~a 445 (585)
T COG0173 367 AKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKD-QFKFLWVVDFPLFEWDEEEGRYVA 445 (585)
T ss_pred HHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcc-cceEEEEEecCccCCccccCceec
Confidence 00000 0 0000 011111111 1379999999983
Q ss_pred -CccccccccCCc---------cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCC
Q 012612 357 -IKAFYMRQNDDG---------RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGS 422 (460)
Q Consensus 357 -~~pf~~~~~~~~---------~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~ 422 (460)
++||+++...+. -.+..|||++||+ ||+|||+|+|+++.|++.|+..|++++ .|+++|+|++||+
T Consensus 446 ~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGa 524 (585)
T COG0173 446 AHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGA 524 (585)
T ss_pred ccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC
Confidence 789998865321 2467899999998 999999999999999999999999987 5789999999999
Q ss_pred CCCcceeccHHHHHHHHcCCCCccccccccCCCCC
Q 012612 423 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 423 pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
|||||+|+|+|||+|+|+|.+||||||+||++.+.
T Consensus 525 PPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a 559 (585)
T COG0173 525 PPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQA 559 (585)
T ss_pred CCCcceeccHHHHHHHHcCCCchhheeecCCCccc
Confidence 99999999999999999999999999999998764
No 18
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=3.3e-94 Score=757.65 Aligned_cols=443 Identities=16% Similarity=0.255 Sum_probs=374.2
Q ss_pred CCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-----cchh
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYD 73 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-----~~~~ 73 (460)
|++++|.++++++++.+.|++ +....+..|+|+|||+++|.+| +++|++|+|.+| +||||++++. ..|.
T Consensus 103 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~ 180 (585)
T PTZ00417 103 PYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFA 180 (585)
T ss_pred CCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHH
Confidence 788999999999999887753 1112345699999999999998 799999999876 5999998652 2354
Q ss_pred h-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCC-ChhhhHHHHHH
Q 012612 74 Q-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 74 ~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
. .+. |+.||+|.|+|.+.+++++ ++||.++++++||+|..++|..-...+.+..-++||||+| ++..+++|++|
T Consensus 181 ~~~~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~R 256 (585)
T PTZ00417 181 ECYDK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITR 256 (585)
T ss_pred HHHhc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHH
Confidence 4 456 9999999999999987755 8999999999999998656653112233444489999998 78999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|+++||+||.++||+||+||+|+++.+++++.||. +++++++.++||++|||||+| |+++|++||||||||||||+
T Consensus 257 S~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~ 335 (585)
T PTZ00417 257 TKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEG 335 (585)
T ss_pred HHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-ecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCC
Confidence 9999999999999999999999999987666778885 566889999999999999985 88899999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc------------cccccccccccchhHhhhhhhhc
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLSTVAE 298 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~------------~~i~~~~~~~~~~~~~~l~~~~~ 298 (460)
++ .||||||||||||++|+||+|+|+++|+||++++..+.+... .++++..+|...++.+++++.++
T Consensus 336 ~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g 414 (585)
T PTZ00417 336 ID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTN 414 (585)
T ss_pred CC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhC
Confidence 95 699999999999999999999999999999999998875421 23455566766778888888888
Q ss_pred CCCcc-----cCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 299 RDFVQ-----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 299 ~~~~~-----i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
.++.. .+++++++++++.|++++....|+..++.+++.++.+++.. .|+||+|||.+++|||+...+++++++|
T Consensus 415 ~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~PtFI~dyP~~~sPLak~~~~dp~v~eR 493 (585)
T PTZ00417 415 TKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-KPFFIIEHPQIMSPLAKYHRSKPGLTER 493 (585)
T ss_pred CCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-CcEEEECCChhhCchhhhcCCCCCeEEe
Confidence 66542 57899999999988766555567778888888888777653 6999999999999999766667789999
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHH------HcCCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCC
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 444 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~ 444 (460)
||||++|+ ||+||+++.+|+.+|+++++ +.| +++.+ ++||+|++||||||||||||||||+|++||.+|
T Consensus 494 FELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~s 571 (585)
T PTZ00417 494 LEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNC 571 (585)
T ss_pred EEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcc
Confidence 99999997 99999999999999988664 334 44443 339999999999999999999999999999999
Q ss_pred ccccccccCCCC
Q 012612 445 IRDAIPFPRTPG 456 (460)
Q Consensus 445 Irdv~~FPr~~~ 456 (460)
||||++||+++.
T Consensus 572 IrdVi~FP~~r~ 583 (585)
T PTZ00417 572 IKDVILFPTMRP 583 (585)
T ss_pred hheeecCCCCCC
Confidence 999999999864
No 19
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-94 Score=726.26 Aligned_cols=441 Identities=20% Similarity=0.315 Sum_probs=386.9
Q ss_pred CCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhh-
Q 012612 3 SKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ- 74 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~- 74 (460)
|+++.|.++++++++...+.+.+ ......|+|+|||.++|.+||.+|++|.|.+| +||++++++. ..|+.
T Consensus 31 ~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~ 108 (502)
T COG1190 31 PYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEAL 108 (502)
T ss_pred CCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHH
Confidence 78899999999999998775311 12223499999999999999999999999996 5999999875 33654
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhh--hh-ccccccCCC-hhhhHHHHH
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF--LR-TKAHLRPRT-NTFGAVARV 150 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~--~r-~~r~l~~R~-~~~~~~~~~ 150 (460)
.+. ++.||+|+|+|.+.+|+++ +++|.|+++++|+||+ .|+|+|.|++.+ .| +.||+|+-. +..+..|..
T Consensus 109 ~~~--~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~ 182 (502)
T COG1190 109 FKK--LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIK 182 (502)
T ss_pred Hhc--cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 455 9999999999999999876 8999999999999998 688899997633 22 789999885 589999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHH-HHHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~~rvfeI~~~FR~E 229 (460)
||+|+++||+||+++||+||+||+|+..++++++.|| +|++|.++.++|||+|||||| +|+++|++|||||+++||||
T Consensus 183 Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNE 261 (502)
T COG1190 183 RSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNE 261 (502)
T ss_pred HHHHHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecccCCceEEeeccHHHHHHHHhcCchhheeeccccccC
Confidence 9999999999999999999999999999999999999 578899999999999999997 59999999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccC-----ccccccccccccchhHhhhhhhhcCC-Ccc
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KEDMDFFNTWIEKGIIDRLSTVAERD-FVQ 303 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~-----~~~i~~~~~~~~~~~~~~l~~~~~~~-~~~ 303 (460)
+. +.||||||||||+|+||+||+|+|+++|+||+++++.+.+.. ...+++.++|.+..+.+.+++..+.. +..
T Consensus 262 Gi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~ 340 (502)
T COG1190 262 GI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDL 340 (502)
T ss_pred CC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCcccccc
Confidence 99 689999999999999999999999999999999999998743 24588888999999999999988874 566
Q ss_pred cCHHHHHHHHHHHcccccccc--ccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCc
Q 012612 304 LSYTDAIELLIKAKKKFEFLV--KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 381 (460)
Q Consensus 304 i~~~ea~~~l~~~~~~~~~~~--~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~ 381 (460)
.+.++|.++++++++...... .+|..++..+|..+.+++. +|+||+|||.++||++++.+++++.++||||+++|.
T Consensus 341 ~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~li--qPTFv~d~P~eiSPLak~~~~~p~~teRFElfi~g~ 418 (502)
T COG1190 341 FDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLI--QPTFVTDHPVEISPLAKRHRSNPGLTERFELFIGGK 418 (502)
T ss_pred CCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhc--CCceeecCccccCccccCCCCCcchhhhheeeeccE
Confidence 788899999999887654332 2556788888887666554 799999999999999988888889999999999997
Q ss_pred eeeecHHHhhhhHHHHHHHHHH------cCCCccc-H-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccC
Q 012612 382 GELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453 (460)
Q Consensus 382 ~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~-~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr 453 (460)
|||||+.+.+|+..|.++|.+ .|-+.+. + ++|++|++|||||+||+|||||||+|+|||+.|||||++||.
T Consensus 419 -EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP~ 497 (502)
T COG1190 419 -EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPA 497 (502)
T ss_pred -EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheecccc
Confidence 999999999999999999864 3444332 2 679999999999999999999999999999999999999997
Q ss_pred CCC
Q 012612 454 TPG 456 (460)
Q Consensus 454 ~~~ 456 (460)
...
T Consensus 498 mr~ 500 (502)
T COG1190 498 MRP 500 (502)
T ss_pred cCC
Confidence 653
No 20
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-93 Score=750.42 Aligned_cols=442 Identities=16% Similarity=0.228 Sum_probs=352.4
Q ss_pred CCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc----chhhH-
Q 012612 4 KVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (460)
Q Consensus 4 ~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~----~~~~~- 75 (460)
++++|.+++++++|.+.|++ +....++.|+|+|||+++|.+||++|++|||++| .||||++++.. .+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~~ 156 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKLK 156 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHHH
Confidence 45789999999999888753 1122355799999999999999999999999996 59999987642 24444
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCC-CCCC-C--cccc---ChhhhhccccccCC-ChhhhHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKRV---SREFLRTKAHLRPR-TNTFGAV 147 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~-~~p~-~--~~~~---~~~~~r~~r~l~~R-~~~~~~~ 147 (460)
+. |+.||+|.|+|+|.+++++ ++||.++++++||++.. ..|+ + .+.+ +.+...++||||+| ++.++++
T Consensus 157 ~~--l~~gdiV~V~G~v~~t~~G--eleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~i 232 (659)
T PTZ00385 157 VS--LRVGDIIGADGVPCRMQRG--ELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIET 232 (659)
T ss_pred hC--CCCCCEEEEEEEEEecCCc--eEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHH
Confidence 45 9999999999999998754 89999999999999642 1222 2 2333 45666699999996 7789999
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccc
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTF 226 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~F 226 (460)
|++||+|+++||+||.++||+||+||+|+++++++++.+|.+ ++++++.++||+||||+||| |+++|++|||||||||
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t-~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~F 311 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVT-HHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVF 311 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEe-ecccCCCCEEecCChHHHHHHHhhcccCCEEEEecee
Confidence 999999999999999999999999999999999999999964 45788999999999999986 8889999999999999
Q ss_pred ccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcc------------ccccccccccchhHhhhh
Q 012612 227 RAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE------------DMDFFNTWIEKGIIDRLS 294 (460)
Q Consensus 227 R~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~------------~i~~~~~~~~~~~~~~l~ 294 (460)
|||+++ .||||||||||||++|.|++++|+++|+||++++..+.+...- ++++..+|.+..+.+.+.
T Consensus 312 RnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~ 390 (659)
T PTZ00385 312 RNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQ 390 (659)
T ss_pred cCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHH
Confidence 999995 8999999999999999999999999999999999998764321 122222333334444444
Q ss_pred hhhcCCCcc---c-CHHHH---HHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC
Q 012612 295 TVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 367 (460)
Q Consensus 295 ~~~~~~~~~---i-~~~ea---~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~ 367 (460)
+.+|.+++. + +.+++ ..++++.|++++....+|..++..++.++.+.+ . +|+||+|||.+++||++...++
T Consensus 391 e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l-~-qPtFI~dyP~e~sPLak~~~~d 468 (659)
T PTZ00385 391 RMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRV-V-EPTFVMDHPLFMSPLAKEQVSR 468 (659)
T ss_pred HHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhh-C-CcEEEeCCccccCcccccCCCC
Confidence 444433321 1 11111 122333344333222334455666677666654 4 8999999999999998765567
Q ss_pred ccceeeeecccCCceeeecHHHhhhhHHHHHHHHH-----HcCCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHH
Q 012612 368 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFA 439 (460)
Q Consensus 368 ~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~-----~~~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l 439 (460)
+++++|||||++|+ ||+||++|+||+.+|+++++ ..+.+++.+ +|||+|++||||||||||||||||+|+|
T Consensus 469 p~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG~GIGIDRLvMll 547 (659)
T PTZ00385 469 PGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGMGIDRALMLL 547 (659)
T ss_pred CCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCceEEcHHHHHHHH
Confidence 78999999999997 99999999999999999993 345566655 8899999999999999999999999999
Q ss_pred cCCCCccccccccCCCC
Q 012612 440 TGVENIRDAIPFPRTPG 456 (460)
Q Consensus 440 ~~~~~Irdv~~FPr~~~ 456 (460)
||.+|||||++||....
T Consensus 548 tg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 548 TNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred cCCcchhheecCccccc
Confidence 99999999999998764
No 21
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=8.5e-92 Score=739.08 Aligned_cols=429 Identities=23% Similarity=0.349 Sum_probs=335.4
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
+++++.++... +.|+.|+|+|||+++|.+|+++|++|||++|. +|||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 57889999764 78999999999999999999999999999974 99999876444666777 9999999999
Q ss_pred eeEeecC-------CCCceEEEEEeEEEEEecCCCCCCCCcc-ccChhhhh-ccccccCCChhhhHHHHHHHHHHHHHHH
Q 012612 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (460)
Q Consensus 90 G~v~~~~-------~~~~~~El~~~~i~ils~~~~~~p~~~~-~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (460)
|+|.+++ ..++++||.++++++||+|. .+|++.. .+..+.+| ++||||+|++.++++|++||+|++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999765 34678999999999999996 4676543 23445555 8999999999999999999999999999
Q ss_pred hhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCc
Q 012612 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAE 239 (460)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~E 239 (460)
||.++||+||+||+|+++++||+++ |.+++..+.+..++|+||||+||| ||++|++||||||||||||+++++|| ||
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~-pE 228 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PE 228 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCC-cc
Confidence 9999999999999999999999887 766543223334559999999998 78999999999999999999998888 99
Q ss_pred cceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhh--------------------c-
Q 012612 240 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA--------------------E- 298 (460)
Q Consensus 240 Ft~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--------------------~- 298 (460)
||||||||+|+|++|+|+++|+||+++++.+.+.. +..+|.+..+.++++++- +
T Consensus 229 FT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~~-----~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~ 303 (583)
T TIGR00459 229 FTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGID-----LKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDS 303 (583)
T ss_pred cCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCCC-----CCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhccC
Confidence 99999999999999999999999999999886521 111121111112111110 0
Q ss_pred ------------------------CCCcccCHHHHHHHHHHHccc------cccc-c----------------------c
Q 012612 299 ------------------------RDFVQLSYTDAIELLIKAKKK------FEFL-V----------------------K 325 (460)
Q Consensus 299 ------------------------~~~~~i~~~ea~~~l~~~~~~------~~~~-~----------------------~ 325 (460)
.++.+-..++..++.++.|.+ .... . +
T Consensus 304 ~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (583)
T TIGR00459 304 EFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILLERTDAQ 383 (583)
T ss_pred CcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHHHHhCCC
Confidence 011122233333444443322 1110 0 0
Q ss_pred cccc--------------cch----hhh-cccccccccCccEEEEeCCCc-----------CccccccccCCcc------
Q 012612 326 WGCD--------------LQS----EHE-RYLTEEAFGGCPVIVSDYPKE-----------IKAFYMRQNDDGR------ 369 (460)
Q Consensus 326 ~~~~--------------l~~----~~e-~~l~~~~~~~~p~~I~~fP~~-----------~~pf~~~~~~~~~------ 369 (460)
.|+. +.. ..+ .-++++-. .+|+||+|||.. ++||+++..+|..
T Consensus 384 ~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~~p 462 (583)
T TIGR00459 384 NGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEAAP 462 (583)
T ss_pred CCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhcCh
Confidence 0000 000 000 01222211 279999999997 9999987655433
Q ss_pred ---ceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 370 ---TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 370 ---~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
.+++|||++||+ ||+|||.|+||++.|+++|+.+|++++ .+++||+|++||+|||||+|+|+|||+|+|||.
T Consensus 463 ~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~ 541 (583)
T TIGR00459 463 EEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGT 541 (583)
T ss_pred hhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcCC
Confidence 688999999998 999999999999999999999999876 379999999999999999999999999999999
Q ss_pred CCccccccccCCCCCc
Q 012612 443 ENIRDAIPFPRTPGSV 458 (460)
Q Consensus 443 ~~Irdv~~FPr~~~~~ 458 (460)
+||||||+||++.+..
T Consensus 542 ~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 542 DNIRDVIAFPKTTAAA 557 (583)
T ss_pred CchhheeecCCCCCCc
Confidence 9999999999988653
No 22
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-89 Score=767.01 Aligned_cols=428 Identities=18% Similarity=0.229 Sum_probs=350.7
Q ss_pred CCCCccccceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhH-hc
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KS 77 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~-~~ 77 (460)
-|+.++|.++++++|+.+. ..+++|+|+|||+++|.+||++|++|+|++| +||||++++.. .++.+ +.
T Consensus 630 ~pyp~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~ 701 (1094)
T PRK02983 630 DPYPVGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA 701 (1094)
T ss_pred CCCCCCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc
Confidence 3888999999999999764 6788999999999999999999999999996 59999987642 24443 44
Q ss_pred cCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHHHHH
Q 012612 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNA 153 (460)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~Rs~ 153 (460)
|+.||+|.|+|++.+++++ ++||.+++|+++++|. .|+|++.+++ +...++||||+| ++.++++|++||+
T Consensus 702 --l~~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~ 775 (1094)
T PRK02983 702 --VDLGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSA 775 (1094)
T ss_pred --CCCCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998865 7999999999999997 5666665543 333489999996 6899999999999
Q ss_pred HHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCC
Q 012612 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSN 232 (460)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~ 232 (460)
|+++||+||.++||+||+||+|+++.+++++++|.+ ++++++.++||+||||+||| |+++|++||||||||||||+++
T Consensus 776 i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t-~~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~ 854 (1094)
T PRK02983 776 VVRAVRETLVARGFLEVETPILQQVHGGANARPFVT-HINAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVD 854 (1094)
T ss_pred HHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEe-eecCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCC
Confidence 999999999999999999999999988888899964 55899999999999999986 8889999999999999999995
Q ss_pred CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHH
Q 012612 233 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312 (460)
Q Consensus 233 ~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~ 312 (460)
.||||||||||+|++|.||+|+|+++|+||+++++.+.+... +.+.+... ...+..++.||+++||.||++.
T Consensus 855 -~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~~~-----~~~~i~~~~pf~rit~~eai~~ 926 (1094)
T PRK02983 855 -ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDGDG-----VLEPVDISGPWPVVTVHDAVSE 926 (1094)
T ss_pred -CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCccc-----cccccccCCCceEEEHHHHHHH
Confidence 699999999999999999999999999999999999875432 11111000 0000113457888888887753
Q ss_pred H------------------HHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeee
Q 012612 313 L------------------IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 374 (460)
Q Consensus 313 l------------------~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~f 374 (460)
. ++.+++.+....+|..++..++.+ +++.+. +|+||+|||.+++|||++.+++++.++||
T Consensus 927 ~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fv~dyP~~~spla~~~~~~p~~~erF 1004 (1094)
T PRK02983 927 ALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHL-VEDRTT-FPTFYTDFPTSVSPLTRPHRSDPGLAERW 1004 (1094)
T ss_pred HhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHH-HHhhcC-CCEEEECCCcccccccccCCCCCCeeEEE
Confidence 2 222332221111222233344444 444444 89999999999999998776777899999
Q ss_pred ecccCCceeeecHHHhhhhHHHHHHHHHH-----cCCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcc
Q 012612 375 DMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 446 (460)
Q Consensus 375 Dl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-----~~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ir 446 (460)
||+++|+ ||+||+++.||+.+|++++++ .+.|++.+ +|||+|++||||||||||||||||+|++||. |||
T Consensus 1005 dL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sIR 1082 (1094)
T PRK02983 1005 DLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SIR 1082 (1094)
T ss_pred EEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-Chh
Confidence 9999997 999999999999999777754 45677766 6899999999999999999999999999996 999
Q ss_pred ccccccCCCC
Q 012612 447 DAIPFPRTPG 456 (460)
Q Consensus 447 dv~~FPr~~~ 456 (460)
||++||+...
T Consensus 1083 dvi~FP~~k~ 1092 (1094)
T PRK02983 1083 ETLPFPLVKP 1092 (1094)
T ss_pred eEecCCcCCC
Confidence 9999999764
No 23
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=5e-88 Score=712.56 Aligned_cols=435 Identities=22% Similarity=0.310 Sum_probs=326.3
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASI 86 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V 86 (460)
.++|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.+. ..++.++. |+.||+|
T Consensus 58 ~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esvV 127 (652)
T PLN02903 58 SRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYVV 127 (652)
T ss_pred cCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCEE
Confidence 467888888774 88999999999999999999999999999975 999998653 22555677 9999999
Q ss_pred EEEeeEeecC-------CCCceEEEEEeEEEEEecCCCCCCCCcc-------ccChhhhhccccccCCChhhhHHHHHHH
Q 012612 87 WIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRN 152 (460)
Q Consensus 87 ~V~G~v~~~~-------~~~~~~El~~~~i~ils~~~~~~p~~~~-------~~~~~~~r~~r~l~~R~~~~~~~~~~Rs 152 (460)
.|+|+|..++ ..++++||.+++++|||+|..++|++.. ..+.+..++|||||+|++.++++|++||
T Consensus 128 ~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs 207 (652)
T PLN02903 128 AVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRH 207 (652)
T ss_pred EEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHH
Confidence 9999999763 1246899999999999999655665432 2355666699999999999999999999
Q ss_pred HHHHHHHHhhhh-CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
++++++|+||.+ +||+||+||+|+++++||+++.| +.+....+..+||+||||+||| +|++|++||||||||||||+
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~-v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~ 286 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDED 286 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccE-EeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCC
Confidence 999999999997 99999999999999999998844 4432233667789999999998 78899999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc----cccccccccc-----cc---------hhHhh
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----EDMDFFNTWI-----EK---------GIIDR 292 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~----~~i~~~~~~~-----~~---------~~~~~ 292 (460)
++++|| ||||||||||+|.|++|+|+++|+||+++++.+.+... ..+.|...+. .+ ++.+.
T Consensus 287 ~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~ 365 (652)
T PLN02903 287 LRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDV 365 (652)
T ss_pred CCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHh
Confidence 998888 99999999999999999999999999999987764210 1111100000 00 00000
Q ss_pred h--------hhhh------------c-CCCcccCHH---HHHHHHHHHc---cc---cccc--c----------------
Q 012612 293 L--------STVA------------E-RDFVQLSYT---DAIELLIKAK---KK---FEFL--V---------------- 324 (460)
Q Consensus 293 l--------~~~~------------~-~~~~~i~~~---ea~~~l~~~~---~~---~~~~--~---------------- 324 (460)
+ ...+ + ..+.+-... +.+....+.| .. .... .
T Consensus 366 ~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~ 445 (652)
T PLN02903 366 FAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQAE 445 (652)
T ss_pred hcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHHH
Confidence 0 0000 0 001110010 0011011111 00 0000 0
Q ss_pred --------cccccc--------------chh----h-hcccccccccCccEEEEeCCCc------------Ccccccccc
Q 012612 325 --------KWGCDL--------------QSE----H-ERYLTEEAFGGCPVIVSDYPKE------------IKAFYMRQN 365 (460)
Q Consensus 325 --------~~~~~l--------------~~~----~-e~~l~~~~~~~~p~~I~~fP~~------------~~pf~~~~~ 365 (460)
+.|+.+ ... . +.-|.++- ...++||+|||+. ++||+++..
T Consensus 446 ~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~-~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~ 524 (652)
T PLN02903 446 QLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPS-RHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNP 524 (652)
T ss_pred HHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCC-CceEEEEEeCCCCCccCCCCceEecCCCCCCCCC
Confidence 000000 000 0 00111111 1368999999983 789998754
Q ss_pred CC-----ccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHH
Q 012612 366 DD-----GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLV 436 (460)
Q Consensus 366 ~~-----~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~ 436 (460)
.| .-.+..|||++||+ ||+|||+|+|+++.|++.++..|++++ .|+|||+|++||+|||||+|+|+|||+
T Consensus 525 ~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldRlv 603 (652)
T PLN02903 525 EDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDRLV 603 (652)
T ss_pred cchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHHHH
Confidence 33 12467899999998 999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHcCCCCccccccccCCCCC
Q 012612 437 QFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 437 m~l~~~~~Irdv~~FPr~~~~ 457 (460)
|+|+|.+||||||+||++.+.
T Consensus 604 mll~~~~~IrdviaFPKt~~g 624 (652)
T PLN02903 604 MLLAGAKSIRDVIAFPKTTTA 624 (652)
T ss_pred HHHcCCCchHheEecCCCCCc
Confidence 999999999999999998764
No 24
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-89 Score=661.66 Aligned_cols=425 Identities=26% Similarity=0.440 Sum_probs=373.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---c---hhhHhccCCCCC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITTG 83 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~---~~~~~~~~l~~g 83 (460)
..+.++||... ..++.|.|+||||+.|..||++|+.||++.+ ++||++..+.. . .+.++. |+.|
T Consensus 69 ~~~~v~dl~~~------~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~--is~E 138 (533)
T KOG0556|consen 69 ELTDVSDLDES------NDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGS--ISKE 138 (533)
T ss_pred ceeehhhhhhh------cCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhh--cCcc
Confidence 34567777654 6789999999999999999999999999875 59999976543 1 223455 9999
Q ss_pred cEEEEEeeEeecCC-----CCceEEEEEeEEEEEecCCCCCCCCcccc--------------------Chhhhhcccccc
Q 012612 84 ASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRV--------------------SREFLRTKAHLR 138 (460)
Q Consensus 84 ~~V~V~G~v~~~~~-----~~~~~El~~~~i~ils~~~~~~p~~~~~~--------------------~~~~~r~~r~l~ 138 (460)
|+|.|.|+|++.+. .++.+||++.+|.++|.+++.+|+..++. ..++..+||.+|
T Consensus 139 SiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlD 218 (533)
T KOG0556|consen 139 SIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLD 218 (533)
T ss_pred eEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeee
Confidence 99999999998653 35789999999999999999899864322 123344899999
Q ss_pred CCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCC
Q 012612 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALS 217 (460)
Q Consensus 139 ~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~ 217 (460)
+|+|..+++|++++.|..++|+||..+||+||+||.|.+.++||++.+|.| .||+.++||+|||||||| +++++|+
T Consensus 219 LRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v---~Yfk~~A~LAQSPQLyKQMaI~gdf~ 295 (533)
T KOG0556|consen 219 LRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV---SYFKQKAYLAQSPQLYKQMAICGDFE 295 (533)
T ss_pred cccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE---EeccCcchhhcChHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999 899999999999999998 6788999
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
|||+||||||+|+|+|.||++||+-||+||+|. .|+|+|+++.+++.++++.+.+++..+|+..+++++.+-.+ .
T Consensus 296 rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fk----f 371 (533)
T KOG0556|consen 296 RVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFK----F 371 (533)
T ss_pred heeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc----c
Confidence 999999999999999999999999999999998 59999999999999999999999988887766655422111 1
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccc----cccccCccEEEEeCCCcCccccccccCCc-cce
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTV 371 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~----~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~ 371 (460)
+ .|-.+++|.|++++|++.|++.. ..+||+.+.|+.|. +++.. .+.++.+||..++|||.++++++ .++
T Consensus 372 ~-~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~eky~t-dfyildkyP~avRPFYTmpd~~~p~yS 445 (533)
T KOG0556|consen 372 L-EPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVREKYDT-DFYILDKYPLAVRPFYTMPDPENPRYS 445 (533)
T ss_pred C-CCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHHHhCC-cEEEEccCccccccccccCCCCCCCcc
Confidence 1 35578999999999999998643 34589999898874 45555 78889999999999998887765 589
Q ss_pred eeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccc
Q 012612 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 451 (460)
Q Consensus 372 ~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~F 451 (460)
++||++++| .||.+|.||+|+++.|.++++.+|+++..+..|+++++||+|||||+|||+||++|++||..|||...+|
T Consensus 446 nSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlF 524 (533)
T KOG0556|consen 446 NSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLF 524 (533)
T ss_pred cchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccC
Confidence 999999999 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 012612 452 PRTPGSV 458 (460)
Q Consensus 452 Pr~~~~~ 458 (460)
||+|+|+
T Consensus 525 PRDPkRL 531 (533)
T KOG0556|consen 525 PRDPKRL 531 (533)
T ss_pred CCCcccc
Confidence 9999997
No 25
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-90 Score=678.20 Aligned_cols=442 Identities=18% Similarity=0.262 Sum_probs=380.5
Q ss_pred CCCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc----cchh
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYD 73 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~----~~~~ 73 (460)
-|+++||..++++.|+...|.+ ++...+..|+|+|||+++|.+| |++|++|++++ .+||||++.+. ..|.
T Consensus 74 ~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g--~klQvm~~~~~~~~~~~F~ 151 (560)
T KOG1885|consen 74 NPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDG--VKLQVMANAKKITSEEDFE 151 (560)
T ss_pred CCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCC--eEEEEEEehhhcCCHHHHH
Confidence 4899999999999999988753 5555667799999999999986 89999999885 46999999765 2466
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhh---hhccccccCC-ChhhhHHHH
Q 012612 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF---LRTKAHLRPR-TNTFGAVAR 149 (460)
Q Consensus 74 ~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~---~r~~r~l~~R-~~~~~~~~~ 149 (460)
+..+ .|+.||+|+|+|.+.+|+++ +++|.+.++.+||+|+ .|+|.+.+++.+ .-+.||+|+- ++..+..|+
T Consensus 152 ~~~~-~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcL--h~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~ 226 (560)
T KOG1885|consen 152 QLHK-FLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCL--HMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFR 226 (560)
T ss_pred HHHh-hhhccCEEeeecCCCcCCCc--eEEEeecchheecchh--ccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHH
Confidence 6432 39999999999999998877 8999999999999999 566655555433 2268999987 557899999
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHH-HHHhcCCCceEEEeccccc
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRA 228 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~~rvfeI~~~FR~ 228 (460)
+|++|++.||.||+++||+||+||+|...++++.+.|| ||+++-++.++||+++||||+ +|+++|++||||||+.|||
T Consensus 227 ~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRN 305 (560)
T KOG1885|consen 227 IRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRN 305 (560)
T ss_pred HHHHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999 678899999999999999997 5999999999999999999
Q ss_pred CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc------------cccccccccccchhHhhhhhh
Q 012612 229 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 229 E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~------------~~i~~~~~~~~~~~~~~l~~~ 296 (460)
|++ +.+||||||.||+||||+||+|+|+++|+|+..++..+.+..+ .++++..+|.+.++++.|++.
T Consensus 306 EGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k~ 384 (560)
T KOG1885|consen 306 EGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEKE 384 (560)
T ss_pred cCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHHH
Confidence 999 6899999999999999999999999999999999999976532 247788899999999999999
Q ss_pred hcCCCcc---cCHHHHHHHHHHH----ccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCcc
Q 012612 297 AERDFVQ---LSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 369 (460)
Q Consensus 297 ~~~~~~~---i~~~ea~~~l~~~----~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~ 369 (460)
++.+++. +.-.|+-++|... +++++.+..-+..|+.+.+.+|.+.+ . +|+||.|+|..|||+++.+.+..+
T Consensus 385 lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~c-v-nPTFi~~hP~imSPLAK~hrs~~g 462 (560)
T KOG1885|consen 385 LGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTC-V-NPTFIIDHPQIMSPLAKYHRSKAG 462 (560)
T ss_pred hCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhcccc-C-CCeeEcCCchhcCccccccccccc
Confidence 9998874 5667777777654 34433333344567888887777755 3 799999999999999998888888
Q ss_pred ceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc------CCCccc--HHHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 370 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 370 ~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
.++||||+++|- ||||++.+.+|+-.|+++|+++ |-|+.. -+.|++|++||+||+||||+|||||+|+||+
T Consensus 463 lteRFElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~MllTd 541 (560)
T KOG1885|consen 463 LTERFELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLVMLLTD 541 (560)
T ss_pred hhhHHHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhhhhhcC
Confidence 999999999996 9999999999999999998653 444222 2779999999999999999999999999999
Q ss_pred CCCccccccccCCC
Q 012612 442 VENIRDAIPFPRTP 455 (460)
Q Consensus 442 ~~~Irdv~~FPr~~ 455 (460)
..|||||++||-..
T Consensus 542 s~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 542 SNNIREVLLFPAMK 555 (560)
T ss_pred CcchhheeeccccC
Confidence 99999999999753
No 26
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.1e-87 Score=710.04 Aligned_cols=434 Identities=25% Similarity=0.362 Sum_probs=332.8
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V 88 (460)
.+++++.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.....|+.+++ |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 367899999764 78999999999999999999999999999975 99999863334666778 999999999
Q ss_pred EeeEeecCCC-------CceEEEEEeEEEEEecCCCCCCCCcc--ccChhhhh-ccccccCCChhhhHHHHHHHHHHHHH
Q 012612 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYAT 158 (460)
Q Consensus 89 ~G~v~~~~~~-------~~~~El~~~~i~ils~~~~~~p~~~~--~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (460)
+|+|.+++.+ ++++||.+++++|||+|. ++|++.. ....+.+| +|||||+|++.+++++++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 568999999999999998 5676542 22344555 99999999999999999999999999
Q ss_pred HHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCC
Q 012612 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHL 237 (460)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl 237 (460)
|+||.++||+||+||+|+++++||+++ |.|++..+.+..+||+||||+||| ||++|++||||||||||||+++++||+
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~ 230 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQP 230 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCc
Confidence 999999999999999999999999877 888654467788899999999998 788999999999999999999999986
Q ss_pred CccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc----cccccccccc-----cc---------hhHhhhh-----
Q 012612 238 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----EDMDFFNTWI-----EK---------GIIDRLS----- 294 (460)
Q Consensus 238 ~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~----~~i~~~~~~~-----~~---------~~~~~l~----- 294 (460)
|||||||||+|.+++|+|+++|+||+++++.+.+... ..+.|...+. .+ ++.+.+.
T Consensus 231 -EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~ 309 (588)
T PRK00476 231 -EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFK 309 (588)
T ss_pred -ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCCch
Confidence 9999999999999999999999999999998765210 0111110000 00 0000000
Q ss_pred ---hhh-------cCCCc-------ccCHHHHHHHHHHHcc------cccc-c----------------------ccccc
Q 012612 295 ---TVA-------ERDFV-------QLSYTDAIELLIKAKK------KFEF-L----------------------VKWGC 328 (460)
Q Consensus 295 ---~~~-------~~~~~-------~i~~~ea~~~l~~~~~------~~~~-~----------------------~~~~~ 328 (460)
+.+ ...++ +-..++..++.+..|. .... . .+-|+
T Consensus 310 vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~GD 389 (588)
T PRK00476 310 VFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALLERTGAKDGD 389 (588)
T ss_pred hhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCCCC
Confidence 000 00001 1112222233332210 0000 0 00011
Q ss_pred cc--------------chh----hh-cccccccccCccEEEEeCCCc------------CccccccccCC--------c-
Q 012612 329 DL--------------QSE----HE-RYLTEEAFGGCPVIVSDYPKE------------IKAFYMRQNDD--------G- 368 (460)
Q Consensus 329 ~l--------------~~~----~e-~~l~~~~~~~~p~~I~~fP~~------------~~pf~~~~~~~--------~- 368 (460)
.+ ... .+ .-+.+.. ..+++||+|||.. ++||+++...| +
T Consensus 390 ll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~-~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~ 468 (588)
T PRK00476 390 LIFFGADKAKVVNDALGALRLKLGKELGLIDED-KFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPG 468 (588)
T ss_pred EEEEECCchHHHHHHHHHHHHHHHHHcCCCCCC-CceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHH
Confidence 00 000 00 0011111 1379999999983 78999875432 1
Q ss_pred -cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCC
Q 012612 369 -RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443 (460)
Q Consensus 369 -~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~ 443 (460)
-.+++|||++||+ ||+|||+|+|+++.|++.|+.+|++++ .++|||+|++||+|||||+|+|+|||+|+|+|.+
T Consensus 469 ~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~ 547 (588)
T PRK00476 469 KARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGAD 547 (588)
T ss_pred HhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCc
Confidence 2568999999998 999999999999999999999999887 5899999999999999999999999999999999
Q ss_pred CccccccccCCCCC
Q 012612 444 NIRDAIPFPRTPGS 457 (460)
Q Consensus 444 ~Irdv~~FPr~~~~ 457 (460)
||||||+||++...
T Consensus 548 ~irdvi~fp~~~~g 561 (588)
T PRK00476 548 SIRDVIAFPKTQSA 561 (588)
T ss_pred cHHheeeccCCCCc
Confidence 99999999998764
No 27
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1e-85 Score=701.36 Aligned_cols=434 Identities=22% Similarity=0.306 Sum_probs=320.4
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~ 85 (460)
.|+|+|.+|... +.|+.|+|+|||+++|++|+++|++|||++|. +|||++.+. ..|+.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 78999999999999999999999999999975 999998653 23566777 999999
Q ss_pred EEEEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCC--ccc-----------cChhhhh-ccccccCCChhh
Q 012612 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (460)
Q Consensus 86 V~V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~--~~~-----------~~~~~~r-~~r~l~~R~~~~ 144 (460)
|.|+|+|.+++. .++++||.+++++||++|. .+|++ .+. ...+.+| +|||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999998532 2368999999999999996 35554 332 1234555 899999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEe
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFG 223 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~ 223 (460)
+++|++||++++++|+||.++||+||+||+|++++++|+++ |.+++..+.+..++|+||||+||| ||++|++||||||
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~-~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~ 231 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARD-YLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLA 231 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcc-eEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEe
Confidence 99999999999999999999999999999999999999887 444432223344559999999998 6889999999999
Q ss_pred cccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhc---cC----------------cccccccccc
Q 012612 224 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD---NC----------------KEDMDFFNTW 284 (460)
Q Consensus 224 ~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~---~~----------------~~~i~~~~~~ 284 (460)
||||||+++++|| ||||||||||+|.|++|+|+++|+||+++++.... .+ ++++.+.-.+
T Consensus 232 ~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l 310 (706)
T PRK12820 232 RCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFAIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKF 310 (706)
T ss_pred chhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEE
Confidence 9999999988877 99999999999999999999999999999862110 00 1111110000
Q ss_pred ccc---------hhHh-hhhh---hhcCCCc----ccCH---HHHH--HHHHHHcc------cccc-c------------
Q 012612 285 IEK---------GIID-RLST---VAERDFV----QLSY---TDAI--ELLIKAKK------KFEF-L------------ 323 (460)
Q Consensus 285 ~~~---------~~~~-~l~~---~~~~~~~----~i~~---~ea~--~~l~~~~~------~~~~-~------------ 323 (460)
.+. .... .++. +....++ .++- ++++ ++.+..|. .... .
T Consensus 311 ~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~ 390 (706)
T PRK12820 311 ADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSAD 390 (706)
T ss_pred EEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccCCHH
Confidence 000 0000 0000 0000000 0111 1101 11222110 0000 0
Q ss_pred ----------ccccccc---------------chh-----hhcccccccccCccEEEEeCCC-----------cCccccc
Q 012612 324 ----------VKWGCDL---------------QSE-----HERYLTEEAFGGCPVIVSDYPK-----------EIKAFYM 362 (460)
Q Consensus 324 ----------~~~~~~l---------------~~~-----~e~~l~~~~~~~~p~~I~~fP~-----------~~~pf~~ 362 (460)
.+.|+.+ ... ...-|.++- ...++||+|||+ .++||++
T Consensus 391 ~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~-~~~flWV~dFPlfe~~~e~~~~a~HHPFT~ 469 (706)
T PRK12820 391 EKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEG-VFHPLWITDFPLFEATDDGGVTSSHHPFTA 469 (706)
T ss_pred HHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCC-CceEEEEEeCCcccCCCCCCeeeeeCCCCC
Confidence 0001100 000 000111111 136899999998 3699998
Q ss_pred cccCC--------c--cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcce
Q 012612 363 RQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 363 ~~~~~--------~--~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~ 428 (460)
+...| + -.+..|||++||+ ||+|||+|+|+++.|++.|+..|++++ .|++||+|++||+|||||+
T Consensus 470 p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~ 548 (706)
T PRK12820 470 PDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGI 548 (706)
T ss_pred cCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 74432 1 1467899999997 999999999999999999999999876 4789999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCCCC
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
|+|+|||+|+|+|.+||||||+||++...
T Consensus 549 a~G~dRlvm~l~~~~sirdviaFPK~~~g 577 (706)
T PRK12820 549 ALGLDRVVSMILQTPSIREVIAFPKNRSA 577 (706)
T ss_pred eccHHHHHHHHcCCccHHHhcccCCCCCC
Confidence 99999999999999999999999998764
No 28
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-83 Score=621.32 Aligned_cols=415 Identities=31% Similarity=0.551 Sum_probs=375.4
Q ss_pred CCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEEEEeeEeecCCC---Cc
Q 012612 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---KQ 100 (460)
Q Consensus 25 ~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~ 100 (460)
.+..|+.|+|.||||+.|.+++++|++||||+|+ ||||++.+. ..|+.+ . |.+++.|.|.|++++.|.| .+
T Consensus 119 ~~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apg 193 (545)
T KOG0555|consen 119 TENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPG 193 (545)
T ss_pred ccccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCC
Confidence 3578999999999999999999999999999987 999999875 335444 3 9999999999999998654 47
Q ss_pred eEEEEEeEEEEEecCCCC---CCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeec
Q 012612 101 KVELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA 177 (460)
Q Consensus 101 ~~El~~~~i~ils~~~~~---~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (460)
+.||.|+.++|++.|... .|+ +..++++.+.++|||-+|....+.+++.|+.+++++|++|.+.||.||..|.|+.
T Consensus 194 ghEl~vdy~Eiig~Apag~~~n~l-ne~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQ 272 (545)
T KOG0555|consen 194 GHELNVDYWEIIGLAPAGGFDNPL-NEESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQ 272 (545)
T ss_pred CceEEeeeeeeecccCCCcccccc-cccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEE
Confidence 899999999999998764 333 3456778888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHH
Q 012612 178 SDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 257 (460)
Q Consensus 178 ~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~ 257 (460)
..-||++..|.. +|||+++||+||+|||++....++++||+|+++||+|.|+|+|||+|||++|+|++|.+++++|+
T Consensus 273 TQVEGGsTLFkl---dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~ 349 (545)
T KOG0555|consen 273 TQVEGGSTLFKL---DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLD 349 (545)
T ss_pred EEecCcceEEee---cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHH
Confidence 999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCcc-ccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc--ccccccccchhh
Q 012612 258 CATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEH 334 (460)
Q Consensus 258 ~~e~li~~l~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~--~~~~~~~l~~~~ 334 (460)
.+|.||...+..+++.+.. .+...++- + +....||.|++|.|||+.|++++++-++ ..++|+|+....
T Consensus 350 ~iE~lvc~~vdr~l~dp~~~li~~lnP~--------f-~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI~eAa 420 (545)
T KOG0555|consen 350 RIEALVCDSVDRLLEDPIAPLIKQLNPD--------F-KAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDIPEAA 420 (545)
T ss_pred HHHHHHHHHHHHHHhChhhhhHHHhCCC--------C-CCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccchhhHH
Confidence 9999999999999877543 22222221 1 2356799999999999999999875433 357899999999
Q ss_pred hcccccccccCccEEEEeCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHH
Q 012612 335 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 413 (460)
Q Consensus 335 e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~ 413 (460)
|+.+.+..+ .|+|++.||.++++|||+++.++ +.+++.|+++||+|||+|||+|+.+.+++.+.++..|+|+++|.|
T Consensus 421 ER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYW 498 (545)
T KOG0555|consen 421 ERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYW 498 (545)
T ss_pred HHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceE
Confidence 999999764 79999999999999999988655 689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 414 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 414 yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++.++||..||||+|||+||++|||++..+||||++|||..+||.
T Consensus 499 y~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 499 YTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred EeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 9999999999999999999999999999999999999999999984
No 29
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=6e-81 Score=623.30 Aligned_cols=319 Identities=46% Similarity=0.800 Sum_probs=286.5
Q ss_pred cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccH
Q 012612 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG 205 (460)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Sp 205 (460)
++.++++++||||+|++.+++++++||.|++++|+||.++||+||+||+|+.+++|+++++|.+ +||++++||++||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---~~~~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---SYFGKPAYLAQSP 78 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc---ccCCCcceecCCH
Confidence 4667888999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred HHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCcccccccccc
Q 012612 206 QLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 284 (460)
Q Consensus 206 ql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~ 284 (460)
|+|||+++.|++|||+||||||||++++.||||||||||||++|+ |++|+|+++|++|+++++.+.+.+..++.+...
T Consensus 79 ql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~- 157 (322)
T cd00776 79 QLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ- 157 (322)
T ss_pred HHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc-
Confidence 999986555599999999999999998899999999999999999 999999999999999999999887766544210
Q ss_pred ccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccc
Q 012612 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 364 (460)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~ 364 (460)
.......+..||+++||.||++++++.+.. ....||.+++..+|++|.+.+.. +|+||+|||.+++|||++.
T Consensus 158 -----~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~l~~~~~~-~p~fi~~~P~~~~pfy~~~ 229 (322)
T cd00776 158 -----LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERLLGEIVKG-DPVFVTDYPKEIKPFYMKP 229 (322)
T ss_pred -----cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHHHHHHhCC-CcEEEECCccccCCceeee
Confidence 001111234689999999999999987653 12468999999999999876533 8999999999999999877
Q ss_pred cCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCC
Q 012612 365 NDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443 (460)
Q Consensus 365 ~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~ 443 (460)
++++ ++++||||+++|++||+||++|+||+++|++++++.|+++++++|||+|+++|+|||||||||||||+|+++|.+
T Consensus 230 ~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~ 309 (322)
T cd00776 230 DDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLD 309 (322)
T ss_pred cCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCC
Confidence 6544 799999999999669999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCC
Q 012612 444 NIRDAIPFPRTPG 456 (460)
Q Consensus 444 ~Irdv~~FPr~~~ 456 (460)
|||||++|||+++
T Consensus 310 ~Irdv~~FPr~~~ 322 (322)
T cd00776 310 NIREAILFPRDPK 322 (322)
T ss_pred chheEeecCCCCC
Confidence 9999999999985
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=6e-79 Score=611.12 Aligned_cols=317 Identities=29% Similarity=0.504 Sum_probs=280.7
Q ss_pred ChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCC----CceeeeccccCCcccccc
Q 012612 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG----EQFCVTTLDFFEKPAFLT 202 (460)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~----~~F~v~~~~~~~~~~~L~ 202 (460)
+.+...++|++++|++.++++|++||+|++++|+||.++||+||+||+|+++++++.. .+|.+.+.+||++++||+
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~ 88 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLA 88 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeec
Confidence 5566668999999999999999999999999999999999999999999998765332 345444448999999999
Q ss_pred ccHHHHHHHHhcCCCceEEEecccccCCCCC--CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 012612 203 VSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDF 280 (460)
Q Consensus 203 ~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~ 280 (460)
+|||+|||++++|++||||||||||||++++ .||||||||||||++|.|++|+|+++|+||+++++.+.++++.++.+
T Consensus 89 ~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~i~~ 168 (335)
T PRK06462 89 DSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEF 168 (335)
T ss_pred cCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 9999999999999999999999999999976 69999999999999999999999999999999999999887766655
Q ss_pred ccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccc
Q 012612 281 FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAF 360 (460)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf 360 (460)
.+.. +. .+..||+++||.||++++++.+.. ..++.+++...|++|.+.+ . .|+||+|||..++||
T Consensus 169 ~~~~--------~~-~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~~yP~~~~pf 233 (335)
T PRK06462 169 FGRD--------LP-HLKRPFKRITHKEAVEILNEEGCR----GIDLEELGSEGEKSLSEHF-E-EPFWIIDIPKGSREF 233 (335)
T ss_pred cCCc--------cc-cCCCCCeEEEHHHHHHHHHhcCCC----cchHHHHhHHHHHHHHHHh-C-CCEEEECCChhhCCc
Confidence 4321 00 124689999999999999887654 2346688889999988754 4 799999999999999
Q ss_pred cccccC-CccceeeeecccC-CceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHH
Q 012612 361 YMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 438 (460)
Q Consensus 361 ~~~~~~-~~~~~~~fDl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~ 438 (460)
|++.++ ++.+++||||+++ |+|||++|++|+|+++++.++++..|++++.++|||+|++||+|||||||||+|||+|+
T Consensus 234 y~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~ 313 (335)
T PRK06462 234 YDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRY 313 (335)
T ss_pred ccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHH
Confidence 987654 4468899999997 77999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCccccccccCCCCCc
Q 012612 439 ATGVENIRDAIPFPRTPGSV 458 (460)
Q Consensus 439 l~~~~~Irdv~~FPr~~~~~ 458 (460)
+||.+|||||++|||++++.
T Consensus 314 ~~g~~~Irdv~~FPr~~g~~ 333 (335)
T PRK06462 314 ICGLRHIREVQPFPRVPGIV 333 (335)
T ss_pred HcCCCchheeeeccCCCCCC
Confidence 99999999999999999975
No 31
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-77 Score=590.29 Aligned_cols=435 Identities=23% Similarity=0.310 Sum_probs=324.1
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhh--HhccCCCCCcEE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASI 86 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~--~~~~~l~~g~~V 86 (460)
++++.+.++... .+|+.|.++||+...|.+|.+.|..|||.+|. +|+.++.+.-...+ ... ++.||+|
T Consensus 33 ~~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv 102 (628)
T KOG2411|consen 33 SRTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVV 102 (628)
T ss_pred hhhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheE
Confidence 456788888765 79999999999999999999999999999975 88888776422222 344 8999999
Q ss_pred EEEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccc-------cChhhhhccccccCCChhhhHHHHHHH
Q 012612 87 WIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRN 152 (460)
Q Consensus 87 ~V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~-------~~~~~~r~~r~l~~R~~~~~~~~~~Rs 152 (460)
.|.|+|..++. .+|.+|+.++++.+++++...+|+.-.+ .+..+..++||||||++.++..+++||
T Consensus 103 ~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS 182 (628)
T KOG2411|consen 103 QVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRS 182 (628)
T ss_pred eeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHH
Confidence 99999987642 3578999999999999998878865321 233334489999999999999999999
Q ss_pred HHHHHHHHhhhh-CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
.+...+|+||.+ .||+||+||+|...++||+++ |.|+++.--|+-+.|.||||+||| ||++|++||||||+|||+|+
T Consensus 183 ~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEd 261 (628)
T KOG2411|consen 183 NVVKKIRRYLNNRHGFVEVETPTLFKRTPGGARE-FVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDED 261 (628)
T ss_pred HHHHHHHHHHhhhcCeeeccCcchhccCCCccce-eecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccc
Confidence 999999999966 579999999999999999999 889887655778899999999999 79999999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc----ccccc------cccccc--------chhHhh
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----EDMDF------FNTWIE--------KGIIDR 292 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~----~~i~~------~~~~~~--------~~~~~~ 292 (460)
++.+|+ |||||+|+||+|.+.+++|+++|++++++|....+... ..|.| ++.-.+ .++.+.
T Consensus 262 lR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~ 340 (628)
T KOG2411|consen 262 LRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGIQLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSES 340 (628)
T ss_pred cCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCCCCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHh
Confidence 999999 99999999999999999999999999999988765311 00111 000000 000000
Q ss_pred hhh-----hhc-------------------------------------CCC--------------cccCHH-HHHHHHHH
Q 012612 293 LST-----VAE-------------------------------------RDF--------------VQLSYT-DAIELLIK 315 (460)
Q Consensus 293 l~~-----~~~-------------------------------------~~~--------------~~i~~~-ea~~~l~~ 315 (460)
+.+ ... .+| ..++.+ .|.++.+.
T Consensus 341 ~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~ 420 (628)
T KOG2411|consen 341 ISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQ 420 (628)
T ss_pred hhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHH
Confidence 000 000 000 001011 11222222
Q ss_pred Hccccccc--ccccc------cc-------chhhhcccccccccCccEEEEeCCCc-------------CccccccccCC
Q 012612 316 AKKKFEFL--VKWGC------DL-------QSEHERYLTEEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD 367 (460)
Q Consensus 316 ~~~~~~~~--~~~~~------~l-------~~~~e~~l~~~~~~~~p~~I~~fP~~-------------~~pf~~~~~~~ 367 (460)
.+..-++- ..||. .| ..++.+.+.++.. -.+.||+|||.. ++||+++..+|
T Consensus 421 ~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~-~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~D 499 (628)
T KOG2411|consen 421 LGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSK-FSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKD 499 (628)
T ss_pred hCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhcccccccc-ceEEEEEeccccCccccCCceeccccCCCCCCChhh
Confidence 21110000 01111 01 1111111222211 257999999984 68999876543
Q ss_pred -------c--cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc-CCCcccH--HHHHHHHhcCCCCCcceeccHHHH
Q 012612 368 -------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERL 435 (460)
Q Consensus 368 -------~--~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL 435 (460)
+ -....|||++||+ |++|||.|+|+++.|+..++.. +++.+.+ ++.|+|+.+|+|||||||+|+|||
T Consensus 500 i~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRl 578 (628)
T KOG2411|consen 500 IDLLESAPEKIRGQHYDLVVNGV-ELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRL 578 (628)
T ss_pred hhHhhcCchhhhcceeeeEEccE-eecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHH
Confidence 1 2456799999998 9999999999999999999854 5554444 589999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCCCC
Q 012612 436 VQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 436 ~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
+|+|||..||||||+||++.+.
T Consensus 579 vaml~~a~sIRDVIAFPKt~~G 600 (628)
T KOG2411|consen 579 VAMLTGAPSIRDVIAFPKTTTG 600 (628)
T ss_pred HHHHcCCCchheeeeccccCCc
Confidence 9999999999999999998654
No 32
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=9.2e-79 Score=613.50 Aligned_cols=312 Identities=40% Similarity=0.687 Sum_probs=261.0
Q ss_pred hhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeec--cccCCccccccccH
Q 012612 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LDFFEKPAFLTVSG 205 (460)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~L~~Sp 205 (460)
.++++++||||+|++.++++|++||.|+++||+||.++||+||+||+|++++++|++++|.|.+ .+||++++||++||
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Sp 81 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSP 81 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSS
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcCh
Confidence 4677899999999999999999999999999999999999999999999999999999999941 24899999999999
Q ss_pred HHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcccccccccc
Q 012612 206 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 284 (460)
Q Consensus 206 ql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~ 284 (460)
|+||| ++++|++||||||||||||+++|.||+|||||||||++|+|++++|+++|+||+++++++.++....
T Consensus 82 ql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~------- 154 (335)
T PF00152_consen 82 QLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKEL------- 154 (335)
T ss_dssp HHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCccc-------
Confidence 99998 6778899999999999999999999999999999999999999999999999999999987441100
Q ss_pred ccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc-------------ccccccccchhhhcccccccccCccEEEE
Q 012612 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKWGCDLQSEHERYLTEEAFGGCPVIVS 351 (460)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~-------------~~~~~~~l~~~~e~~l~~~~~~~~p~~I~ 351 (460)
.+...+..+|++++|.||++++...+.+... ...+|.++...+|+.|++.... .|+||+
T Consensus 155 -------~~~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~-~p~fI~ 226 (335)
T PF00152_consen 155 -------SLNIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFT-DPVFIT 226 (335)
T ss_dssp -------HTCEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSS-SEEEEE
T ss_pred -------cccccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccC-CcEEEE
Confidence 0011233569999999999998876432211 0123556778888877754444 899999
Q ss_pred eCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCccc----HHHHHHHHhcCCCCCc
Q 012612 352 DYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHA 426 (460)
Q Consensus 352 ~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~~~~~G~pp~~ 426 (460)
|||..++|||++.++++ .++++|||+++| +||+|||+|+||+++|++++++.++++++ ++|||+|+++|+||||
T Consensus 227 ~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~ 305 (335)
T PF00152_consen 227 DYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHG 305 (335)
T ss_dssp EEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEE
T ss_pred ecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccC
Confidence 99999999999888776 799999999999 59999999999999999999999988777 8999999999999999
Q ss_pred ceeccHHHHHHHHcCCCCccccccccCCC
Q 012612 427 GFGLGFERLVQFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 427 G~giGidRL~m~l~~~~~Irdv~~FPr~~ 455 (460)
|||||+|||+|+++|.+|||||++|||+.
T Consensus 306 G~glG~eRLvm~l~g~~~Irdv~~FPr~~ 334 (335)
T PF00152_consen 306 GFGLGLERLVMLLLGLKNIRDVIPFPRDR 334 (335)
T ss_dssp EEEEEHHHHHHHHHT-SSGGGGSSS-CBT
T ss_pred cceehHHHHHHHHcCCCcHHheecCCCCC
Confidence 99999999999999999999999999986
No 33
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.1e-71 Score=557.78 Aligned_cols=296 Identities=21% Similarity=0.299 Sum_probs=248.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCce
Q 012612 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNV 219 (460)
Q Consensus 141 ~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rv 219 (460)
++.+++++++||++++++|+||.++||+||+||+|+++++++++++|.+. .++++.++||+||||+|+| ++++|++||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~-~~~~~~~~yL~~Spql~~k~ll~~g~~~v 79 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFERV 79 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec-cCCCCcceeeccCHHHHHHHHHhcCCCcE
Confidence 35789999999999999999999999999999999988877778899764 3688999999999999986 778899999
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcC
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 299 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 299 (460)
|+||||||||++ +.||||||||||||++|.+++|+|+++|++|+++++.+.+.+ ++++.+.- .....
T Consensus 80 f~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~--~~~~~~~~----------~~~~~ 146 (329)
T cd00775 80 YEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKT--KIEYGGKE----------LDFTP 146 (329)
T ss_pred EEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCCcc----------ccCCC
Confidence 999999999999 589999999999999999999999999999999999887653 23222210 01235
Q ss_pred CCcccCHHHHHHHHHHHcccc-----------------------ccccccccccchhhhcccccccccCccEEEEeCCCc
Q 012612 300 DFVQLSYTDAIELLIKAKKKF-----------------------EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 356 (460)
Q Consensus 300 ~~~~i~~~ea~~~l~~~~~~~-----------------------~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~ 356 (460)
||+++||.||++.+. |+.. +....|+..++..+++++.+.+ + .|+||+|||..
T Consensus 147 pf~rity~eA~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~-~-~p~fi~~yP~~ 222 (329)
T cd00775 147 PFKRVTMVDALKEKT--GIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTL-I-QPTFIIDHPVE 222 (329)
T ss_pred CceEEEHHHHHHHHh--CCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcccc-C-CCEEEECCChH
Confidence 899999999987653 2211 1111344445556667666654 4 89999999999
Q ss_pred CccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc------CCCccc--HHHHHHHHhcCCCCCcce
Q 012612 357 IKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 357 ~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~~~~~G~pp~~G~ 428 (460)
++|||+..++++++++||||+++|+ ||+||++|+||+++++++++.. +.+++. .+|||+|++||+||||||
T Consensus 223 ~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~ 301 (329)
T cd00775 223 ISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGL 301 (329)
T ss_pred hCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcE
Confidence 9999876555668999999999998 9999999999999999998663 555543 489999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCC
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~ 455 (460)
|||+|||+|+++|.+|||||++||++.
T Consensus 302 glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 302 GIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred EecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 999999999999999999999999975
No 34
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=6.8e-70 Score=529.54 Aligned_cols=260 Identities=27% Similarity=0.478 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccC--CccccccccHHHHHH-HHhcCCCceEEEec
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFF--EKPAFLTVSGQLNAE-TYATALSNVYTFGP 224 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~--~~~~~L~~Spql~l~-l~~~g~~rvfeI~~ 224 (460)
+++||++++++|+||.++||+||+||+|+++++|+++++|.+ +|+ |+++||++|||+|+| ++++|++|||+|+|
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~---~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~ 77 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLV---KYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINR 77 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEe---eecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEec
Confidence 578999999999999999999999999999888888899998 566 899999999999997 56789999999999
Q ss_pred ccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCccc
Q 012612 225 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 304 (460)
Q Consensus 225 ~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i 304 (460)
|||+|+ .+.||++||||||+|++|.+++|+|+++|++|+++++.+.+++..++... . ..+..||++|
T Consensus 78 ~fR~e~-~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~-----------~-~~~~~~~~ri 144 (269)
T cd00669 78 NFRNED-LRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFE-----------L-EDFGLPFPRL 144 (269)
T ss_pred ceeCCC-CCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccc-----------c-cccCCCceEe
Confidence 999995 48999999999999999999999999999999999999987765444211 0 1234689999
Q ss_pred CHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccC-CccceeeeecccCCcee
Q 012612 305 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGE 383 (460)
Q Consensus 305 ~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~fDl~~~G~~E 383 (460)
||.||++++. .|+||+|||...+|||++.++ ++++++||||+++|+ |
T Consensus 145 t~~ea~~~~~-------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-E 192 (269)
T cd00669 145 TYREALERYG-------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV-E 192 (269)
T ss_pred eHHHHHHHhC-------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCE-E
Confidence 9999976532 589999999999999887665 457899999999996 9
Q ss_pred eecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCC
Q 012612 384 LIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 384 i~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~ 455 (460)
|+||++|+||+++|.+++++.+++++ .++|||+|++||+|||||||||+|||+|+++|.+|||||++|||++
T Consensus 193 i~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 193 VGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred EeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 99999999999999999999999988 8999999999999999999999999999999999999999999986
No 35
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=3.8e-70 Score=540.99 Aligned_cols=288 Identities=23% Similarity=0.281 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecC-CCCCCCCceeeecc--ccCCccccccccHHHHHH-HHhcCCCceEEEe
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTL--DFFEKPAFLTVSGQLNAE-TYATALSNVYTFG 223 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-~~eg~~~~F~v~~~--~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~ 223 (460)
+++|+.+++++|+||.++||+||+||+|+++ .+++++++|.+... +++++++||+||||+|+| ++++|++||||||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 5789999999999999999999999999998 56788999987311 133479999999999987 8899999999999
Q ss_pred cccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcc
Q 012612 224 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ 303 (460)
Q Consensus 224 ~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (460)
||||||++ +.||||||||||||++|.|++|+|+++|++|+++++.. ..+|......+++++..+.++..
T Consensus 81 p~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~----------~~~~~~it~~ea~~~~~~~~~~~ 149 (304)
T TIGR00462 81 KVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDP----------FAPWERLSYQEAFLRYAGIDPLT 149 (304)
T ss_pred CceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------CCCcEEEEHHHHHHHHhCCCccc
Confidence 99999999 58999999999999999999999999999999998752 12333334556666677777777
Q ss_pred cCHHHHHHHHHHHccccccccccccccchhhhccccc---c-cccCccEEEEeCCCcCccccccccCCccceeeeecccC
Q 012612 304 LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---E-AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP 379 (460)
Q Consensus 304 i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~---~-~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~ 379 (460)
.+..++.+++++.|+.. .++.|++..+|+.+.+ + +..++|+||+|||..++|||++..+++++++||||+++
T Consensus 150 ~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~~~~~~~~~~~~rfdl~~~ 225 (304)
T TIGR00462 150 ASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAERFELYIK 225 (304)
T ss_pred CCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCccccCCCCCeeEEEEEEEC
Confidence 78888888888877542 3566788888887743 2 22237999999999999998654455678999999999
Q ss_pred CceeeecHHHhhhhHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccc
Q 012612 380 RIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 451 (460)
Q Consensus 380 G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~F 451 (460)
|+ ||+||++|++|+++++++++. .|+++.++ +|||+|++||+|||||||||+|||+|+++|.+|||||++|
T Consensus 226 G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 226 GL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred CE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 97 999999999999999998865 68888888 6899999999999999999999999999999999999998
No 36
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=1.2e-64 Score=495.47 Aligned_cols=271 Identities=29% Similarity=0.454 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccc
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTF 226 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~F 226 (460)
+++||+|++++|+||.++||+||+||+|++++++|+++ |.+......+..+||+||||+||| ++++|++|||+|+|||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 57899999999999999999999999999988888766 876422223455679999999998 6789999999999999
Q ss_pred ccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCH
Q 012612 227 RAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSY 306 (460)
Q Consensus 227 R~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 306 (460)
|+|++++.|| +||||+|||++|.|++++|+++|++|++++..+.+. ....||+++||
T Consensus 80 R~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------------------~~~~p~~rity 136 (280)
T cd00777 80 RDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------------------ELTTPFPRMTY 136 (280)
T ss_pred eCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCCceeeH
Confidence 9999987777 599999999999999999999999999999887542 12358999999
Q ss_pred HHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEe-CCCcCc---cccccccCCccceeeeecccCCce
Q 012612 307 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK---AFYMRQNDDGRTVAAMDMLVPRIG 382 (460)
Q Consensus 307 ~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~-fP~~~~---pf~~~~~~~~~~~~~fDl~~~G~~ 382 (460)
.||++.+ +. ...|+.|+.. .+.... ..+++++++ ||+... |++ +.++++++++||||+++|+
T Consensus 137 ~eA~~~~---~~----~~~~~~d~~~-~~~~~~----~~~~~~~~~pf~~~~~~~~~~~-~~~~~~~~~~~fdl~~~G~- 202 (280)
T cd00777 137 AEAMERY---GF----KFLWIVDFPL-FEWDEE----EGRLVSAHHPFTAPKEEDLDLL-EKDPEDARAQAYDLVLNGV- 202 (280)
T ss_pred HHHHHHh---CC----CCccccCCcc-cCChhH----HHHHHHHhCCCcCCCcccchhh-hcCCccCeeEEEEEEeCCE-
Confidence 9998763 22 1235544321 000000 112333444 433221 222 2333336899999999997
Q ss_pred eeecHHHhhhhHHHHHHHHHHcCCC----cccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCC
Q 012612 383 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456 (460)
Q Consensus 383 Ei~~g~~r~~~~~~~~~~~~~~~~~----~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~ 456 (460)
||+||++|+||+++|++++++.+++ ++.++|||+|++||+|||||||||+|||+|++||.+|||||++|||+.+
T Consensus 203 Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 203 ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999988 4567999999999999999999999999999999999999999999864
No 37
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=2.8e-64 Score=499.56 Aligned_cols=285 Identities=18% Similarity=0.188 Sum_probs=230.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCCCceeeeccccC------CccccccccHHHHHH-HHhcCC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLDFF------EKPAFLTVSGQLNAE-TYATAL 216 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~~F~v~~~~~~------~~~~~L~~Spql~l~-l~~~g~ 216 (460)
..++++|++|++++|+||.++||+||+||+|+..+. +....+|.+ +|+ ++.+||+||||++++ ++++|+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~---~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~ 78 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFET---RFVGPGASQGKTLWLMTSPEYHMKRLLAAGS 78 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceee---eeccccccCCcceEEecCHHHHHHHHhhccc
Confidence 468999999999999999999999999999987654 344567876 455 789999999999975 888999
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
+|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++++.. .+|......+++++.
T Consensus 79 ~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------------~~~~~i~~~eaf~~~ 145 (306)
T PRK09350 79 GPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------EPAESLSYQQAFLRY 145 (306)
T ss_pred cceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------------CCceEEEHHHHHHHH
Confidence 999999999999999 8999999999999999999999999999999998753 112222334556666
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhh----cccccccccCccEEEEeCCCcCccccccccCCcccee
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE----RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e----~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~ 372 (460)
++.+....+..++.+.+.+.|..- ....+.+++...+ ..+.+.+..+.|+||+|||..++|||++.++++++++
T Consensus 146 ~g~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~a~~~~~~~~~~~ 223 (306)
T PRK09350 146 LGIDPLSADKTQLREVAAKLGLSN--IADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAE 223 (306)
T ss_pred hCCCCCcCCHHHHHHHHHHcCCCC--cCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCccccccCCCCCeeE
Confidence 666666667777776666655410 0111223333333 3223333323699999999999999876555668999
Q ss_pred eeecccCCceeeecHHHhhhhHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCC
Q 012612 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 444 (460)
Q Consensus 373 ~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~ 444 (460)
||||+++|+ ||+||++|+||+++++++++. .|.++.++ +|||+|++||+|||||||||||||+|++||.+|
T Consensus 224 rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~ 302 (306)
T PRK09350 224 RFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAES 302 (306)
T ss_pred EEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCC
Confidence 999999997 999999999999999999864 67888888 569999999999999999999999999999999
Q ss_pred cccc
Q 012612 445 IRDA 448 (460)
Q Consensus 445 Irdv 448 (460)
||||
T Consensus 303 Irdv 306 (306)
T PRK09350 303 ISEV 306 (306)
T ss_pred cccC
Confidence 9997
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-54 Score=406.04 Aligned_cols=293 Identities=22% Similarity=0.232 Sum_probs=233.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCCCceeeecc---ccCCccccccccHHHHH-HHHhcCCCc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTL---DFFEKPAFLTVSGQLNA-ETYATALSN 218 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~~F~v~~~---~~~~~~~~L~~Spql~l-~l~~~g~~r 218 (460)
....+..|+.|++.||.||.++||+||+||.|+.++. +....+|.+... ..-+.+.||++|||+++ +|+++|-++
T Consensus 12 ~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 12 SIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCc
Confidence 3456899999999999999999999999999998766 667788987322 11147899999999996 699999999
Q ss_pred eEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhc
Q 012612 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 298 (460)
Q Consensus 219 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 298 (460)
+|||++||||++. +.+|+|||||||||..+.||+.+|+.+.+|++.++.... .+.+ ...+.+...+|
T Consensus 92 ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~---~E~l---------s~~eaF~r~~g 158 (322)
T COG2269 92 IFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE---AERL---------SYQEAFLRYLG 158 (322)
T ss_pred chhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---ccee---------eHHHHHHHHhC
Confidence 9999999999996 899999999999999999999999999999999876432 1122 22334445566
Q ss_pred CCCcccCHHHHHHHHHHHccccccccccccccchhhhccc----ccccccCccEEEEeCCCcCccccccccCCccceeee
Q 012612 299 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL----TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 374 (460)
Q Consensus 299 ~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l----~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~f 374 (460)
.+.....-.+..+.+++.|+.... +++.+.++.+.+ .++++.++|+||+|||...+.++.....|+.+++||
T Consensus 159 id~l~~~~~~L~~~~~~~~l~~~~----~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~~~D~rVAERF 234 (322)
T COG2269 159 IDPLSADKTELREAAAKLGLSAAT----DEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQISTGDPRVAERF 234 (322)
T ss_pred CCcccccHHHHHHHHHhcCCCCCC----ccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHhhccCCCCcchhhhh
Confidence 555554444445555555654222 223444444433 334555689999999999999998777778899999
Q ss_pred ecccCCceeeecHHHhhhhHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcc
Q 012612 375 DMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 446 (460)
Q Consensus 375 Dl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ir 446 (460)
|||+.|+ ||+||.-+..|.++|+++++. .+...-++ ++||.|+.. ||||+|+++|+|||+|+++|..+|.
T Consensus 235 ElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i~ 312 (322)
T COG2269 235 ELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESID 312 (322)
T ss_pred hheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchHH
Confidence 9999999 999999999999999999853 23333333 679999999 9999999999999999999999999
Q ss_pred ccccccCCC
Q 012612 447 DAIPFPRTP 455 (460)
Q Consensus 447 dv~~FPr~~ 455 (460)
+|++||...
T Consensus 313 ~Vi~f~v~~ 321 (322)
T COG2269 313 DVIAFPVAR 321 (322)
T ss_pred HHhhccccc
Confidence 999999753
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.86 E-value=2.7e-21 Score=169.89 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=100.6
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCCCCCcEEEEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~ 89 (460)
+++++++.+. ..|+.|+|+|||+++|.+|+++|++|+|++| .+|+|++.+..+ ++.++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4677787653 5788999999999999999999999999996 499999865433 666777 9999999999
Q ss_pred eeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChh
Q 012612 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (460)
Q Consensus 90 G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~ 143 (460)
|++..++. ..+++||.++++++|++| .++|+..+. .+.+...+|||||+|++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99998643 346799999999999999 568886654 246666699999999874
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.82 E-value=1.1e-19 Score=152.12 Aligned_cols=100 Identities=27% Similarity=0.500 Sum_probs=88.3
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCC--ccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~--~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
|+|+|||+++|.+|+++|++|||++|. +|+|++.+ ...|+.+++ |+.||+|.|+|++.+++...+++||.++++
T Consensus 2 V~v~Gwv~~~R~~gk~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~i 77 (103)
T cd04319 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEKL 77 (103)
T ss_pred EEEEEEEEeEEcCCCeEEEEEecCCee--EEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEEE
Confidence 899999999999999999999999964 99999865 234666777 999999999999999887777899999999
Q ss_pred EEEecCCCCCCCCccccChhhhhccccc
Q 012612 110 VLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (460)
Q Consensus 110 ~ils~~~~~~p~~~~~~~~~~~r~~r~l 137 (460)
+++|+|. ++|++.+. +.++++++|||
T Consensus 78 ~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 78 EIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 9999996 68988664 88899999986
No 41
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.80 E-value=7.2e-19 Score=148.43 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=86.9
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEEEEE
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (460)
++.++... ..|+.|+|+|||+++|.+|+++|++|||++|. +|+|++.+. ..|+.+++ |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45566543 57899999999999999999999999999974 999998653 23667778 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCcc
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~ 124 (460)
|++.+++...+++||.++++++||+|..++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999887777899999999999999877887643
No 42
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.79 E-value=1.4e-18 Score=146.70 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=82.6
Q ss_pred EEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 31 ~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
+|+|+|||+++|.+|+++|++|+|+++ .+|+|++.+. ..|..+.+ .|+.||+|.|+|++.+++++ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~-~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKK-LLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHh-cCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999985 5999998653 23444432 29999999999999998874 7999999
Q ss_pred EEEEEecCCCCCCCCcccc---ChhhhhccccccC
Q 012612 108 KIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRP 139 (460)
Q Consensus 108 ~i~ils~~~~~~p~~~~~~---~~~~~r~~r~l~~ 139 (460)
+++|||+|. +|+|.+.+ +.++.+++||||+
T Consensus 76 ~~~ils~~~--~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSL--RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccC--CCCCCCccCcCChhheeecccccC
Confidence 999999997 45554433 4566668999885
No 43
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.77 E-value=6.8e-18 Score=161.02 Aligned_cols=268 Identities=16% Similarity=0.121 Sum_probs=173.4
Q ss_pred HHHHHHHhhh-----hCCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHH-H-hcCC---C
Q 012612 154 LAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAET-Y-ATAL---S 217 (460)
Q Consensus 154 i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l-~-~~g~---~ 217 (460)
.|..|++||. +.+.+.|..|.++....+ |...|-..+..+.-+..+-..+|-.-||++ + --|| +
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~ge 82 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGE 82 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCc
Confidence 3556666664 469999999999975553 222332222223335667788899999974 3 3455 6
Q ss_pred ceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 218 NVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 218 rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
.+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+ ..+...
T Consensus 83 GlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y---------~~~~~~ 152 (309)
T cd00645 83 GLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKY---------PQLEPI 152 (309)
T ss_pred eeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------hhhhhc
Confidence 68998988885 565 7899999999999998776666677777777777766543211000000 011112
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccCCccceee
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDDGRTVAA 373 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~~~~~~~~ 373 (460)
+...+.=+|.+|..+. +...-..+.|..++..+ +.|||+.--..++ |--.+..+.+.+..+
T Consensus 153 Lp~~i~FitsqeL~~~-------------YP~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDYDDW~LN 216 (309)
T cd00645 153 LPEEITFITSQELEDR-------------YPDLTPKEREDAICKEH---GAVFIIGIGGKLSDGKKHDGRAPDYDDWTLN 216 (309)
T ss_pred CCCceEEecHHHHHHH-------------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCCcCcccc
Confidence 2222222333443221 11111234555555544 4677776554432 222222233445555
Q ss_pred eecccC------CceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCCcceeccHHHHHHHHcCCCCc
Q 012612 374 MDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENI 445 (460)
Q Consensus 374 fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~~G-~pp~~G~giGidRL~m~l~~~~~I 445 (460)
=|+++- .+ ||.++++|.+. +.+.++++..| .+...+.| ++++..| +|||+|+|||+|||+|+|||..+|
T Consensus 217 GDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HI 293 (309)
T cd00645 217 GDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHI 293 (309)
T ss_pred ceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchh
Confidence 555432 56 99999999999 99999999988 56667776 9999999 999999999999999999999999
Q ss_pred ccccc
Q 012612 446 RDAIP 450 (460)
Q Consensus 446 rdv~~ 450 (460)
.+|++
T Consensus 294 gEVqa 298 (309)
T cd00645 294 GEVQA 298 (309)
T ss_pred cceee
Confidence 99975
No 44
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.75 E-value=2.2e-17 Score=159.26 Aligned_cols=278 Identities=14% Similarity=0.101 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhhhh-----CCceeecCceeecCCCCCC------CCceeeeccccCCccccccccHHHHHHHH--
Q 012612 146 AVARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGA------GEQFCVTTLDFFEKPAFLTVSGQLNAETY-- 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~eg~------~~~F~v~~~~~~~~~~~L~~Spql~l~l~-- 212 (460)
..++...+.|..|++||.. .+.+.|..|+++....+-+ ..+-.+...+.-+..+-..+|-.-||++.
T Consensus 6 ~~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~ 85 (348)
T PTZ00213 6 SAYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLG 85 (348)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHH
Confidence 3455566778888888854 6999999999997544211 12222222233356677788888899743
Q ss_pred hcCC---CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchh
Q 012612 213 ATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 289 (460)
Q Consensus 213 ~~g~---~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~ 289 (460)
--+| +.+|+=+++.|.++.-+..|.----|.|||+....-+.-++.+.+.++.++..+......-...+.
T Consensus 86 ~y~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~yp------- 158 (348)
T PTZ00213 86 EHKFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTEEAICNEYP------- 158 (348)
T ss_pred hcCCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHch-------
Confidence 3455 569998888885433478999999999999987766666777777777776665432110000000
Q ss_pred HhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccC
Q 012612 290 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQND 366 (460)
Q Consensus 290 ~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~ 366 (460)
.+...+...+.=++.+|..+. +...-..+.|..++..+ ..|||+.--..++ |--.+..+
T Consensus 159 --~l~~~Lp~~I~FitsqeL~~~-------------YP~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RApD 220 (348)
T PTZ00213 159 --NLKRILPKEITFLHTEHLLKM-------------YPNLSPKEREREIVKKY---GAVFLIGIGCKLSSGDTHDLRAPD 220 (348)
T ss_pred --hhhhcCCCceEEecHHHHHHH-------------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCC
Confidence 011111111111222221111 00000112222222222 2233333221110 00000000
Q ss_pred Cccc-------------------------eeeeecc-----cCCceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHH
Q 012612 367 DGRT-------------------------VAAMDML-----VPRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYL 415 (460)
Q Consensus 367 ~~~~-------------------------~~~fDl~-----~~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl 415 (460)
.+.+ ..+=|++ +.--.||.++++|+ +++.+.++++..| .+...+.||+
T Consensus 221 YDDW~t~~~~~~~~~~~~~~~~~~~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~ 299 (348)
T PTZ00213 221 YDDWSSPVSASKIGFPTADPTMNSLMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQ 299 (348)
T ss_pred cccccccccccccccccccccccccccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHH
Confidence 0011 1222332 22225999999999 9999999999998 5777889999
Q ss_pred HHHhcC-CCCCcceeccHHHHHHHHcCCCCcccccc
Q 012612 416 DLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 416 ~~~~~G-~pp~~G~giGidRL~m~l~~~~~Irdv~~ 450 (460)
+ +..| +|+|+|+|||+|||+|+|||..+|.||++
T Consensus 300 ~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 300 M-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred H-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 9 6667 99999999999999999999999999975
No 45
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.74 E-value=3.1e-17 Score=157.97 Aligned_cols=273 Identities=15% Similarity=0.083 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHhhh-----hCCceeecCceeecCCCCCC------CCceeeeccccCCccccccccHHHHHHHHh--c
Q 012612 148 ARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGA------GEQFCVTTLDFFEKPAFLTVSGQLNAETYA--T 214 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~eg~------~~~F~v~~~~~~~~~~~L~~Spql~l~l~~--~ 214 (460)
++.-...++.|+++|. +.+.+.|..|.++....+-+ ..|-.....+.-+..+-..+|-.-||++.. -
T Consensus 8 ~~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y 87 (327)
T PRK05425 8 FIETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRY 87 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhc
Confidence 3334455666676664 46999999999997554321 122222111333456778888888997443 3
Q ss_pred CC---CceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhH
Q 012612 215 AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 290 (460)
Q Consensus 215 g~---~rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~ 290 (460)
+| +.+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+.
T Consensus 88 ~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~-------- 158 (327)
T PRK05425 88 GFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYP-------- 158 (327)
T ss_pred CCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCc--------
Confidence 66 468998888885 565 78999999999999987766666777777777777665432110000000
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccCC
Q 012612 291 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDD 367 (460)
Q Consensus 291 ~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~~ 367 (460)
.+ +.+...+.=||.+|..+. +...-..+.|..++..+ +.|||+.--..++ |-..+..+.
T Consensus 159 -~~-~~Lp~~i~FitsqeL~~~-------------YP~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDY 220 (327)
T PRK05425 159 -LL-PFLPEEITFITSQELEDR-------------YPDLTPKEREDAIAKEY---GAVFLIGIGGKLSDGKPHDGRAPDY 220 (327)
T ss_pred -cc-ccCCCceEEecHHHHHHH-------------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCC
Confidence 00 111111122333342211 11112234455555544 4677776554432 222222233
Q ss_pred ccceeeeecccC------CceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCCcceeccHHHHHHHH
Q 012612 368 GRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFA 439 (460)
Q Consensus 368 ~~~~~~fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~~G-~pp~~G~giGidRL~m~l 439 (460)
+.+..+=||++- .+ ||.++++|++ ++.+.++++..| .+...+.||+++ ..| +|||+|+|||+|||+|+|
T Consensus 221 DDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~L 297 (327)
T PRK05425 221 DDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLL 297 (327)
T ss_pred cCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHH
Confidence 445555555432 56 9999999999 999999999998 577788999999 667 999999999999999999
Q ss_pred cCCCCcccccc
Q 012612 440 TGVENIRDAIP 450 (460)
Q Consensus 440 ~~~~~Irdv~~ 450 (460)
||..+|.||++
T Consensus 298 L~k~HIgEVq~ 308 (327)
T PRK05425 298 LQKAHIGEVQA 308 (327)
T ss_pred hccchhccccc
Confidence 99999999975
No 46
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.72 E-value=6.2e-17 Score=129.66 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=73.4
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~i 111 (460)
|+|+|||+++|.+|+++|++|||+++.+++||+++++...|+.+++ |+.||+|.|+|.+.+++.+++++||.++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 7999999999999999999999999866899999877655777788 99999999999999998777899999999999
Q ss_pred Eec
Q 012612 112 VGK 114 (460)
Q Consensus 112 ls~ 114 (460)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 863
No 47
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.71 E-value=8.3e-17 Score=134.43 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.1
Q ss_pred EEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-----cchhhHhccCCCCCcEEEEEeeEeecCCC-----C
Q 012612 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (460)
Q Consensus 31 ~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-----~~~~~~~~~~l~~g~~V~V~G~v~~~~~~-----~ 99 (460)
.|+|+|||+++|.+| +++|++|||++| .+||+++.+. ..++.++. |+.||+|.|+|++.+++.. +
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999996 4999998653 12445677 9999999999999987552 2
Q ss_pred ceEEEEEeEEEEEecCCCCCCCCc
Q 012612 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (460)
Q Consensus 100 ~~~El~~~~i~ils~~~~~~p~~~ 123 (460)
+++||.++++++|++|..++|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 689999999999999976688754
No 48
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.71 E-value=1.6e-16 Score=152.60 Aligned_cols=275 Identities=15% Similarity=0.103 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHhhhh-----CCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHHHh--
Q 012612 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAETYA-- 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~-- 213 (460)
.++.-...|..|++||.. .+.++|..|.++....+ |...|-..+..+.-+..+-..+|-.-||++..
T Consensus 4 ~~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~ 83 (330)
T TIGR00669 4 AFILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLAR 83 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHh
Confidence 455566677888888854 69999999999975442 11222222222333567778889999998443
Q ss_pred cCC---CceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchh
Q 012612 214 TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 289 (460)
Q Consensus 214 ~g~---~rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~ 289 (460)
-+| +.+|+=..+-|. |+.-+..|.----|.|||.....-+.-++.+.+.++.++..+......-...+
T Consensus 84 y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te~~~~~~y-------- 155 (330)
T TIGR00669 84 HDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATEAAVSERF-------- 155 (330)
T ss_pred cCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 366 569998988885 56247899999999999998776666677777777777766543211000000
Q ss_pred HhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccC
Q 012612 290 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQND 366 (460)
Q Consensus 290 ~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~ 366 (460)
.+...+..++.=+|.+|. .+. +...-..+.|..++..+ ..|||+.--..++ |--.+..+
T Consensus 156 --~l~~~Lp~~I~FitsqeL---~~~----------YP~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RApD 217 (330)
T TIGR00669 156 --GLAPFLPDQIHFVHSEEL---VSR----------YPDLDSKGRERAICKEL---GAVFLIGIGGKLSDGKPHDVRAPD 217 (330)
T ss_pred --CccccCCCceEEecHHHH---HHH----------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCC
Confidence 011111111122233332 221 11111234455555544 3577766544332 11111112
Q ss_pred Cccce---------eeeecccC------CceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCCccee
Q 012612 367 DGRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFG 429 (460)
Q Consensus 367 ~~~~~---------~~fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~~G-~pp~~G~g 429 (460)
.+.+. .+=|+++- .+ ||.+.+.|. |.+.+.++++..| .+...+.||+++ ..| +|||+|+|
T Consensus 218 YDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGG 294 (330)
T TIGR00669 218 YDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGG 294 (330)
T ss_pred cccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCcccccc
Confidence 22233 34444332 46 999999999 6777778888888 677889999999 667 99999999
Q ss_pred ccHHHHHHHHcCCCCcccccc
Q 012612 430 LGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 430 iGidRL~m~l~~~~~Irdv~~ 450 (460)
||+|||+|+|||..+|.||++
T Consensus 295 IGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 295 IGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred ccHHHHHHHHhccccccceee
Confidence 999999999999999999975
No 49
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.70 E-value=1.4e-16 Score=128.68 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=71.2
Q ss_pred EEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCC----ceEEEEE
Q 012612 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELKV 106 (460)
Q Consensus 32 V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~----~~~El~~ 106 (460)
|+|+|||+++|. +|+++|++|||++| ..+||+++++...|+.+++ |+.||+|.|+|++.+++.+. +++||.+
T Consensus 2 V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~ 78 (86)
T cd04321 2 VTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELVV 78 (86)
T ss_pred EEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEEE
Confidence 899999999999 69999999999998 4699999876556777888 99999999999999988654 7899999
Q ss_pred eEEEEEec
Q 012612 107 NKIVLVGK 114 (460)
Q Consensus 107 ~~i~ils~ 114 (460)
+++++|++
T Consensus 79 ~~i~il~~ 86 (86)
T cd04321 79 DDIQTLNA 86 (86)
T ss_pred EEEEEecC
Confidence 99999984
No 50
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.68 E-value=4e-16 Score=125.57 Aligned_cols=79 Identities=29% Similarity=0.574 Sum_probs=70.7
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCCCCCcEEEEEeeEeecCCC---CceEEEEEe
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKVN 107 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~~~El~~~ 107 (460)
|+|+|||+++|.+|+++|++|||+++. +|++++.+... ++.+++ |+.||+|.|+|++.+++.+ .+++||.++
T Consensus 2 V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~~ 77 (84)
T cd04323 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQVD 77 (84)
T ss_pred EEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEEE
Confidence 899999999999999999999999975 99999865433 666778 9999999999999999877 788999999
Q ss_pred EEEEEec
Q 012612 108 KIVLVGK 114 (460)
Q Consensus 108 ~i~ils~ 114 (460)
++++||+
T Consensus 78 ~i~vl~~ 84 (84)
T cd04323 78 YLEIIGE 84 (84)
T ss_pred EEEEEcC
Confidence 9999985
No 51
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.65 E-value=1.2e-15 Score=123.06 Aligned_cols=79 Identities=25% Similarity=0.564 Sum_probs=69.7
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc--hhhHhccCCCCCcEEEEEeeEeecCC---CCceEEEEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELKV 106 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~V~G~v~~~~~---~~~~~El~~ 106 (460)
|+|+|||+++|.+|+++|++|||+++ .+|++++.+..+ ++.++. |+.||+|.|+|++.+++. ..+++||.+
T Consensus 2 V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~~ 77 (85)
T cd04100 2 VTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQA 77 (85)
T ss_pred EEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEEE
Confidence 89999999999999999999999995 599999876533 556777 999999999999999885 467899999
Q ss_pred eEEEEEec
Q 012612 107 NKIVLVGK 114 (460)
Q Consensus 107 ~~i~ils~ 114 (460)
+++++|++
T Consensus 78 ~~i~il~~ 85 (85)
T cd04100 78 EELEVLSK 85 (85)
T ss_pred eEEEEECC
Confidence 99999985
No 52
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.57 E-value=1.3e-14 Score=147.55 Aligned_cols=108 Identities=23% Similarity=0.343 Sum_probs=79.0
Q ss_pred CChhhhHHHHH-----HHHHHHHHHHhhhhCCceeecCceeecCCC------CCCCCceeeeccccCCcccccc--ccHH
Q 012612 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLDFFEKPAFLT--VSGQ 206 (460)
Q Consensus 140 R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~L~--~Spq 206 (460)
|.+..++++.. .+.+.++||++|...||.||.||+|+.... .++.+ +. ...-..+...+|+ ..|+
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~-i~-~~my~ideel~LRpsLtPs 267 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTE-LS-KQIFRVDKNFCLRPMLAPG 267 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCccc-ch-hhheeeCCceEehhhhHHH
Confidence 77889999999 999999999999999999999999975321 11111 10 0000124567888 5777
Q ss_pred HHHHHHh-----cCCCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 207 LNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 207 l~l~l~~-----~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
++..+.. ..--|+|+||+|||+|.. +.+|++||+|++++....
T Consensus 268 Llr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs 315 (417)
T PRK09537 268 LYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGS 315 (417)
T ss_pred HHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCC
Confidence 7654321 112479999999999986 678999999999998754
No 53
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.56 E-value=1.8e-14 Score=138.54 Aligned_cols=191 Identities=17% Similarity=0.254 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecC--------CC-C-C---CCCceeeeccccC--CccccccccHHHH-HHHH---
Q 012612 152 NALAYATHKFFQENGFIWISSPIITAS--------DC-E-G---AGEQFCVTTLDFF--EKPAFLTVSGQLN-AETY--- 212 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~-e-g---~~~~F~v~~~~~~--~~~~~L~~Spql~-l~l~--- 212 (460)
+++.+.||++|...||.|+.+|.+.+. .+ + . ..+.|.+.. ..- .....||++---. .+.|
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~-p~~~~~~~~vLRThts~~~~~~l~~~ 98 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISN-PYSAEEDYSVLRTHTSPGQLRTLNKH 98 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCS-SSBCECSSEEE-SSTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeec-cccccchhhhhhhhhhHHHHHHHHHh
Confidence 568889999999999999999999541 11 1 1 123343321 111 4556677533222 2444
Q ss_pred hcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhH
Q 012612 213 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 290 (460)
Q Consensus 213 ~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~ 290 (460)
...=-|+|+||+|||+|.. +.+|+|+|+|+|.-.... ++.++...++.++++++..
T Consensus 99 ~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~--------------------- 156 (247)
T PF01409_consen 99 RPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI--------------------- 156 (247)
T ss_dssp SHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT---------------------
T ss_pred cCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc---------------------
Confidence 2224689999999999988 689999999999876654 5677766666666655311
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccc
Q 012612 291 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 370 (460)
Q Consensus 291 ~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~ 370 (460)
+. +-.+.+.+ .||+.+
T Consensus 157 ----------------------------~~--------------~~r~~ps~---------------fPfteP------- 172 (247)
T PF01409_consen 157 ----------------------------DV--------------KVRFRPSY---------------FPFTEP------- 172 (247)
T ss_dssp ----------------------------TE--------------EEEEEECE---------------ETTEEE-------
T ss_pred ----------------------------cc--------------ceEeecCC---------------CCcccC-------
Confidence 00 00012212 266643
Q ss_pred eeeeeccc----C-CceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCc
Q 012612 371 VAAMDMLV----P-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 445 (460)
Q Consensus 371 ~~~fDl~~----~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~I 445 (460)
+...|+++ + |+-||+++++-. -+.+++.|+| +. -|..+||+|+|||+|+..|+++|
T Consensus 173 s~e~~i~~~~~~~~~wiEvgg~G~vh------P~Vl~~~gid-~~------------~~~~A~G~GleRlam~~~gi~di 233 (247)
T PF01409_consen 173 SREADIYCGVCKGGGWIEVGGCGMVH------PEVLENWGID-EE------------YPGFAFGLGLERLAMLKYGIPDI 233 (247)
T ss_dssp EEEEEEEEECTTTTCEEEEEEEEEE-------HHHHHHTT---TT------------SEEEEEEEEHHHHHHHHHT-SSG
T ss_pred CeEEEEEEeeccCCCceEEeeccccc------HhhhhccCcC-cc------------ceEEEecCCHHHHHHHHcCCchH
Confidence 34567766 1 333999888755 4455777886 32 24568999999999999999999
Q ss_pred ccc
Q 012612 446 RDA 448 (460)
Q Consensus 446 rdv 448 (460)
|+.
T Consensus 234 R~~ 236 (247)
T PF01409_consen 234 RLL 236 (247)
T ss_dssp GHH
T ss_pred HHH
Confidence 974
No 54
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=5.3e-14 Score=138.69 Aligned_cols=191 Identities=20% Similarity=0.268 Sum_probs=120.7
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeecc--------ccCCcc---ccccc--cHHHHHHHHhcC---
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL--------DFFEKP---AFLTV--SGQLNAETYATA--- 215 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~--------~~~~~~---~~L~~--Spql~l~l~~~g--- 215 (460)
.+++..|+++|.+.||.|++.|.+.+.-- .--..|....| -|++.. .-||+ || .--+.|...
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~-NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~-vq~R~l~~~~~~ 191 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFY-NFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSP-VQARTLAENAKI 191 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCccccccc-chhhhcCCCCCCcccccceEEEcCCCCceeecccCcH-hhHHHHHhCCCC
Confidence 45888999999999999999996654211 00001111111 122221 34542 33 222444433
Q ss_pred CCceEEEecccccCCCCCCCCCCccceeeeeec--CCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhh
Q 012612 216 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELA--FADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 293 (460)
Q Consensus 216 ~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~--~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l 293 (460)
=-|+|.+++|||+|.. +.+|+|||+|+|--.. ..++.+++.+++++++.++..-
T Consensus 192 P~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~----------------------- 247 (335)
T COG0016 192 PIKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGED----------------------- 247 (335)
T ss_pred CceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCC-----------------------
Confidence 3589999999999988 6899999999994332 2345666665555555443110
Q ss_pred hhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 294 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 294 ~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
.+-.+.+.++ ||+.+ +..
T Consensus 248 ----------------------------------------~~vRfrpsyF---------------PFTEP-------S~E 265 (335)
T COG0016 248 ----------------------------------------VKVRFRPSYF---------------PFTEP-------SAE 265 (335)
T ss_pred ----------------------------------------cceEeecCCC---------------CCCCC-------eEE
Confidence 0011222232 78754 445
Q ss_pred eecccCC---ceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcccc
Q 012612 374 MDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 448 (460)
Q Consensus 374 fDl~~~G---~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv 448 (460)
.|++++| +=||+|+++-. -+.++..|++++++.. -.||||+|||.|+.+|+++||+.
T Consensus 266 vdv~~~~~~~WlEi~G~Gmv~------P~VL~~~G~~~~~~~G------------fAfGlGlERlAMLkygI~DIR~l 325 (335)
T COG0016 266 VDVYCPGCGGWLEILGCGMVH------PNVLEAVGIDPEEYSG------------FAFGLGLERLAMLKYGIPDIRDL 325 (335)
T ss_pred EEEEEcCCCCEEEEecccccC------HHHHHhcCCCCCcceE------------EEEeecHHHHHHHHhCCcHHHHH
Confidence 7777763 45999999866 4566888987775421 16899999999999999999974
No 55
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.52 E-value=1.4e-13 Score=136.45 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCC-C-C--------CCC---CceeeeccccCCcccccc--ccHHHHHHHHhcC-
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASD-C-E--------GAG---EQFCVTTLDFFEKPAFLT--VSGQLNAETYATA- 215 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-e--------g~~---~~F~v~~~~~~~~~~~L~--~Spql~l~l~~~g- 215 (460)
+.+...||++|...||.|+++|.|.+.. + + .++ +.|.+ +...-|| +||-+. +.|...
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI------~~~~lLRThTSp~qi-r~L~~~~ 183 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI------DDGLLLRTHTSPVQI-RTMEKQK 183 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE------cCCceeeccCcHHHH-HHHHhcC
Confidence 5688899999999999999999987521 0 1 111 23333 3334555 455442 333322
Q ss_pred C-CceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHHHH
Q 012612 216 L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVV 267 (460)
Q Consensus 216 ~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~l~ 267 (460)
. -|+|++|+|||++.. +.+|.|+|+|+|.-... .++.++...++.++++++
T Consensus 184 ~Pirif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 184 PPIRIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred CCeEEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 2 389999999999987 68999999999976554 357777777766666654
No 56
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.49 E-value=1.4e-13 Score=139.58 Aligned_cols=96 Identities=24% Similarity=0.376 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCC----CCCceeeeccccCCcccccc--ccHHHHHHHHh--
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLDFFEKPAFLT--VSGQLNAETYA-- 213 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~L~--~Spql~l~l~~-- 213 (460)
..-.+.+.+.+|++|...||.||.||+|+... .+. ..+.|. ++...+|+ ..|+++..+..
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk------~ee~lvLRPdLTPsLaR~La~N~ 312 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR------VDKNFCLRPMLAPNLYNYLRKLD 312 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE------ecCceEecccCHHHHHHHHHHhh
Confidence 34468899999999999999999999997311 011 112332 23457888 77888753321
Q ss_pred ---cCCCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 214 ---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 214 ---~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
..-.|+|+||+|||+|.. +.+|+.||+|++++.+..
T Consensus 313 ~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~ 351 (453)
T TIGR02367 313 RALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGS 351 (453)
T ss_pred hhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECC
Confidence 223599999999999987 678999999999998754
No 57
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.42 E-value=1.7e-13 Score=128.34 Aligned_cols=99 Identities=23% Similarity=0.333 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC---CceeeeccccCCccccccccHHHHH-HHHhc----CCCceEE
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAG---EQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT----ALSNVYT 221 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~---~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~----g~~rvfe 221 (460)
|+.+.+.+|++|.+.||.||.||.++.... +... +...+ ..+..+...+|++|....+ +.+.. .--|+||
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLP-VGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheee-eecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 678999999999999999999999987522 2111 11111 1134466789999999987 55543 3468999
Q ss_pred EecccccCCCCCC--CCCCccceeeeeecCCC
Q 012612 222 FGPTFRAENSNTS--RHLAEFWMIEPELAFAD 251 (460)
Q Consensus 222 I~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~ 251 (460)
||+|||+|.. +. +|+.||+|+++++...+
T Consensus 81 ig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 81 IGPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred EcceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 9999999875 33 68899999999998654
No 58
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.42 E-value=1.3e-12 Score=134.87 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=34.4
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYL 263 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li 263 (460)
-|+|.|++|||+|.. +.+|+|||+|+|.-... .++.+++.++++++
T Consensus 343 ~k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~ 390 (492)
T PLN02853 343 KRYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFF 390 (492)
T ss_pred cEEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHH
Confidence 389999999999998 68999999999965542 24555554444443
No 59
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.39 E-value=3e-12 Score=132.84 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.4
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
-|+|.|++|||+|.. +.+|+|||+|+|......
T Consensus 358 ~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~ 390 (494)
T PTZ00326 358 KKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDR 390 (494)
T ss_pred ceEEecCCEecCCCC-CCCcCceeEEEEEEEEeC
Confidence 489999999999998 689999999999887643
No 60
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.24 E-value=3.9e-11 Score=121.90 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhhC---Cceeec--CceeecCCCCCCCCceeeecc-------ccCCccccccccHHHHH-HHHhcCCCc
Q 012612 152 NALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTL-------DFFEKPAFLTVSGQLNA-ETYATALSN 218 (460)
Q Consensus 152 s~i~~~iR~ff~~~---gF~EV~--TPiL~~~~~eg~~~~F~v~~~-------~~~~~~~~L~~Spql~l-~l~~~g~~r 218 (460)
+.+++.|+++|.+. ||.+++ .|+.+...+-.+.. |+..|. -|.+...-||+----+. ++|..+-.|
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~-~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~~~~~~ 149 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVL-VPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLRAGHTH 149 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhC-CCCCCCccCccceEEecCCccccCCCcHHHHHHHHhCCCc
Confidence 34677788888886 999998 56555422211100 111111 23455666765433333 556567779
Q ss_pred eEEEecccccCCCCCCCCCCccceeeeeecC
Q 012612 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAF 249 (460)
Q Consensus 219 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~ 249 (460)
++.+|+|||++.. +.+|.|+|+|+|.-+.+
T Consensus 150 ~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 150 FLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred EEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 9999999999998 68999999999987764
No 61
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=99.21 E-value=6.7e-10 Score=103.58 Aligned_cols=276 Identities=17% Similarity=0.141 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhhhh-----CCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHH--HH
Q 012612 146 AVARVRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAE--TY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~--l~ 212 (460)
..+..+.+-++.+.++|.+ .|.+||..|+|+....+ |...+..|.....-+...-...|-.-||+ |.
T Consensus 3 k~fI~qQ~~IsfvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~ 82 (330)
T COG2502 3 KAFILQQQAISFVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLA 82 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHH
Confidence 4556667777777777754 69999999999974332 22233333222223334556678888886 34
Q ss_pred hcCC---CceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccch
Q 012612 213 ATAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 288 (460)
Q Consensus 213 ~~g~---~rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~ 288 (460)
--|| +..|.=.++-|. |++-+..|.---.|.|||....+-+.-++.+.+.++.+...+..... .+ ...+
T Consensus 83 r~~f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te~-av--~~~~---- 155 (330)
T COG2502 83 RYGFSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETEL-AV--SAEF---- 155 (330)
T ss_pred hcCCcCCCceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHHH-HH--HHhc----
Confidence 4455 569999999995 77667889888899999988777776677777777777766543210 00 0000
Q ss_pred hHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccc-hhhhcccccccccCccEEEEeCCCcCc---cccccc
Q 012612 289 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQ 364 (460)
Q Consensus 289 ~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~ 364 (460)
.+..++. ..|+|-.+-++.+. ++ +|+ +..|+.+...+ ..+|++.---.++ |-.-+.
T Consensus 156 ---~~~~~LP---~~ItFihseeL~~r----yP-------~L~~k~RE~ai~Ke~---gAvFligIGg~LsdG~~hd~Ra 215 (330)
T COG2502 156 ---GLAPFLP---DQITFIHSQELVAR----YP-------DLDPKGRERAIAKEL---GAVFLIGIGGKLSDGKPHDVRA 215 (330)
T ss_pred ---CCcccCc---cceEEeehHHHHHh----CC-------CCCcchhhHHHHHhh---CcEEEEecccccCCCCcCCCCC
Confidence 0111111 23444333223222 11 122 22344444333 3455554322211 111111
Q ss_pred cCCccce---------eeeecccC------CceeeecHHHhhhhHHHHHHHHHHcCCC-cccHHHHHHHHhcCCCCCcce
Q 012612 365 NDDGRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDELKLN-RDSYWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 365 ~~~~~~~---------~~fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~~~-~~~~~~yl~~~~~G~pp~~G~ 428 (460)
++-+.++ .+=|+++. ++ |+.+-+.|. |.+.++++++..|.. ...++|.-..+.--+|.+-|.
T Consensus 216 PdYDdWtt~se~~~~gLNGDilvwn~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGG 293 (330)
T COG2502 216 PDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGG 293 (330)
T ss_pred CCccccCCcccccccccCCcEEEechhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccC
Confidence 1111111 23344332 56 999999998 667777777766643 234577777777779999999
Q ss_pred eccHHHHHHHHcCCCCcccccc
Q 012612 429 GLGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~ 450 (460)
|||-.||+|+|++.++|-+|.+
T Consensus 294 GIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 294 GIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred cccHHHHHHHHhcccccceeee
Confidence 9999999999999999999964
No 62
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.20 E-value=9.7e-11 Score=115.99 Aligned_cols=105 Identities=15% Similarity=0.229 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCC-C-CCC---C--------CceeeeccccCCccccccccHHHH-HHHHhcCC-
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASD-C-EGA---G--------EQFCVTTLDFFEKPAFLTVSGQLN-AETYATAL- 216 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-eg~---~--------~~F~v~~~~~~~~~~~L~~Spql~-l~l~~~g~- 216 (460)
.++...+|+.|...||.|+.||.+.+.. . +.. . +.|.+ .....||+|---- ++.+....
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l------~d~~vLRtsl~p~ll~~l~~N~~ 148 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYI------KDRLLLRTHTTAVQLRTMEENEK 148 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceee------cCCcceecccHHHHHHHHHhcCC
Confidence 4577788999999999999999998751 1 111 0 12222 2345676655443 35555544
Q ss_pred --CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 217 --SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 217 --~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
-|+||||+|||++.. +.+|+|||+|++.-+... ++.++...+|.++
T Consensus 149 ~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll 198 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFL 198 (294)
T ss_pred CCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHH
Confidence 489999999999876 568999999999775432 4555544444444
No 63
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.10 E-value=4.6e-10 Score=115.07 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=48.0
Q ss_pred ccccccccCCccceeeeecccCC-ceeeecHHHhhhhHHHHHHHHHHcCCCcccH-HHHHHHHhcCCCCCcceeccHHHH
Q 012612 358 KAFYMRQNDDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERL 435 (460)
Q Consensus 358 ~pf~~~~~~~~~~~~~fDl~~~G-~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL 435 (460)
.||+.+ +...|+.++| +=||+|+++-. .+.+++.|++++.+ +| -||||+|||
T Consensus 272 fPfteP-------s~evdi~~~g~WiEi~gcG~v~------p~vl~~~g~~~~~~~g~-------------AfGiGleRl 325 (460)
T TIGR00469 272 FPFTAP-------SWEIEIWFKDEWLELCGCGIIR------HDILLRAGVHPSETIGW-------------AFGLGLDRI 325 (460)
T ss_pred CCCCCc-------ceEEEEEECCeeEEEeeeccCc------HHHHHHcCCCccceEEE-------------EEEecHHHH
Confidence 477653 4557888888 22999999866 45667778876532 11 489999999
Q ss_pred HHHHcCCCCccc
Q 012612 436 VQFATGVENIRD 447 (460)
Q Consensus 436 ~m~l~~~~~Ird 447 (460)
+|++.|+++||.
T Consensus 326 aMl~~gi~DiR~ 337 (460)
T TIGR00469 326 AMLLFDIPDIRL 337 (460)
T ss_pred HHHHcCccHHHH
Confidence 999999999985
No 64
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.05 E-value=4.6e-09 Score=111.32 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecC-------------CCCCCCCceeeeccc------------------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITAS-------------DCEGAGEQFCVTTLD------------------ 193 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-------------~~eg~~~~F~v~~~~------------------ 193 (460)
..-...+..+++.+|+.|...||.|++||.+.++ +.-...+.|.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~ 308 (489)
T PRK04172 229 PGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEH 308 (489)
T ss_pred CCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhc
Confidence 3445678889999999999999999999999743 001122333332100
Q ss_pred --c-------------CCccccccccHHHHH-HHHh-cCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 194 --F-------------FEKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 194 --~-------------~~~~~~L~~Spql~l-~l~~-~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
+ .++...||..-=-.. ++++ .+. -|+|+||+|||+|.. +..|++||+|+++.+...
T Consensus 309 g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~ 383 (489)
T PRK04172 309 GGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGE 383 (489)
T ss_pred cCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEeC
Confidence 0 012345554332222 3333 232 389999999999987 467889999999998764
No 65
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.96 E-value=2.3e-08 Score=97.59 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CCCCCceeeeccccCCcccccccc--HHHHHHHHhc----
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLDFFEKPAFLTVS--GQLNAETYAT---- 214 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~~~~~~~L~~S--pql~l~l~~~---- 214 (460)
.+.|..+.+.+++.|.+.||.||.||+|..... ....+.|.+. +--++.+.|+.- |++. ++.+.
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~--d~~g~~l~LRpd~T~~ia-R~~a~~~~~ 78 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFK--DKGGRDLALRPDLTAPVA-RAVAENLLS 78 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEE--CCCCCEEEeCCCCcHHHH-HHHHhcCcc
Confidence 367889999999999999999999999987432 1223456553 333666777743 3333 32221
Q ss_pred --CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 215 --ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 215 --g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.--|+|++++|||+|.. ...|.-||+|+++|+-..+
T Consensus 79 ~~~p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 79 LPLPLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CCCCeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 23489999999999987 4567899999999986553
No 66
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.95 E-value=9e-09 Score=80.19 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=60.7
Q ss_pred EEEEEEEeee-ccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 012612 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 32 V~v~GwV~~~-R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ 110 (460)
|+|.|||.++ |..++++|+.|+|++| .+|+++..+. .....+. |++|++|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 6679999999999995 5999998721 1223455 9999999999999998654 6999999998
Q ss_pred EE
Q 012612 111 LV 112 (460)
Q Consensus 111 il 112 (460)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 67
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.77 E-value=2.2e-08 Score=102.07 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=40.6
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 266 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l 266 (460)
-|+|++|+|||+|...+.+|+++|+|+|.-.+.. ++.+++..++.|++++
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999643569999999999777654 5788887777777665
No 68
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.61 E-value=2e-07 Score=88.50 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=77.7
Q ss_pred HHHHHHHHhhhhCCceeecCceeecCCC--CCCC-----------CceeeeccccCCccccccccHHHH-HHHHhc--CC
Q 012612 153 ALAYATHKFFQENGFIWISSPIITASDC--EGAG-----------EQFCVTTLDFFEKPAFLTVSGQLN-AETYAT--AL 216 (460)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~~-----------~~F~v~~~~~~~~~~~L~~Spql~-l~l~~~--g~ 216 (460)
++.+.+|++|...||.||.|+.+++... +... +++.+. |-. -.+||+|-=-. ++.++. .-
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~--NP~--~~~LR~sLlp~LL~~l~~N~~~ 80 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIN--DPA--RLLLRTHTSAVQARALAKLKPP 80 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEEC--CCc--eEEEeccCcHHHHHHHHhcCCC
Confidence 4667789999999999999999987621 1110 111221 111 25677654333 255544 55
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 266 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l 266 (460)
-|+||||+|||++.. +.+|+|||+|+++.++.. |+.+++..+|.++..+
T Consensus 81 ~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 81 IRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred eeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 689999999999875 457889999999999987 8999999999988643
No 69
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.48 E-value=4e-06 Score=84.15 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CCCCCceeeeccccCCccccccc--cHHHHHHHHhc--C
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT--A 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~--g 215 (460)
.-.+++..+...+++.|.+.||.||+||++..... +...+.|.+. +--|..+.|+. .+++-.-+... +
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~--d~~g~~l~LRpD~T~~iaR~~~~~~~~ 83 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLF--DSLGRVLGLRPDMTTPIARAVSTRLRD 83 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEE--CCCCCEEeecCcCcHHHHHHHHHhccc
Confidence 45677899999999999999999999999887322 1222355443 22366666663 44433222221 2
Q ss_pred ---CCceEEEecccccCCCCCCCCCCccceeeeeecCCC-H---HHHHHHHHHHHHH
Q 012612 216 ---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 265 (460)
Q Consensus 216 ---~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~---~~~~~~~e~li~~ 265 (460)
--|+|++|+|||.|... .-+.-||+|+.+|.-..+ . -|++.++-+.+..
T Consensus 84 ~~~p~r~~y~g~VfR~~~~~-~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 84 RPLPLRLCYAGNVFRTNESG-AGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred CCCCeEEEEeceEeecCCCc-CCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 34899999999999873 456789999999985443 2 2445544444443
No 70
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.44 E-value=4e-07 Score=83.19 Aligned_cols=116 Identities=25% Similarity=0.318 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhh-hCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHH-HHHh----c-
Q 012612 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA----T- 214 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~----~- 214 (460)
++.+|++.+++.+. +.||.||.||+|.+... . | ..+.|.+. +--+..++|+.+.+... .++. .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~--~~~~~~~~L~pt~~~~~~~~~~~~~~~~ 78 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVK--DRGDEEYCLRPTSEPGIYSLFKNEIRSS 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEE--ETTTEEEEE-SSSHHHHHHHHHHHEEBH
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeee--ecccccEEeccccccceeeeecceeeec
Confidence 47889999999999 99999999999998433 1 1 12345443 22235688887766543 2221 1
Q ss_pred --CC-CceEEEecccccCCC--CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 215 --AL-SNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 215 --g~-~rvfeI~~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
.+ =|+|++|+|||+|.. .+-..+-||+|.|++....+ ++..+..++++.....
T Consensus 79 ~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~ 136 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKE 136 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred cccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHH
Confidence 12 279999999999932 23456779999999997777 7777777776665443
No 71
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.4e-05 Score=82.64 Aligned_cols=116 Identities=23% Similarity=0.315 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCC----CCceeeeccccCCcccccc---ccHHHHHHHH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLDFFEKPAFLT---VSGQLNAETY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~L~---~Spql~l~l~ 212 (460)
.-...+..|...+|+-+.+.||.||.||++-... +|.. .+.|... +--++.+.|+ ++|=. +++
T Consensus 16 ~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~--Dkggr~laLRpe~Tapv~--R~~ 91 (429)
T COG0124 16 EDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFK--DKGGRSLALRPELTAPVA--RAV 91 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEE--eCCCCEEEecccCcHHHH--HHH
Confidence 3577889999999999999999999999886532 2221 1222221 2235556665 23321 332
Q ss_pred hc------CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHHH
Q 012612 213 AT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYV 266 (460)
Q Consensus 213 ~~------g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~l 266 (460)
+. ---|.|.++||||.|.....|- =||+|+++|....+ --|++.++-+++..+
T Consensus 92 ~en~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 92 AENKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred HhccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 22 2248999999999999988887 69999999997653 236677666666554
No 72
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.14 E-value=1.2e-05 Score=83.19 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CC----CCCceeeeccccCCccccccc--cHHHHHHHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLDFFEKPAFLTV--SGQLNAETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg----~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~ 212 (460)
-.-.+.+..+...+++.|.+.||.||.||++..... +. ..+.|.+. +.-|+.+.|+. .+++...+.
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~--d~~g~~l~LRpD~T~~iaR~~~ 88 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFK--DKGGRSLTLRPEGTAPVARAVI 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEE--CCCCCEEeecCCCcHHHHHHHH
Confidence 345788899999999999999999999999966321 11 12345443 33466667763 334432222
Q ss_pred hc----C-CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 213 AT----A-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 213 ~~----g-~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. . --|+|++++|||+|.... .|.-||+|+++|....+
T Consensus 89 ~~~~~~~~p~r~~y~g~vfR~e~~~~-gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 89 ENKLLLPKPFKLYYIGPMFRYERPQK-GRYRQFHQFGVEVIGSD 131 (397)
T ss_pred hcccccCCCeEEEEEcCeecCCCCCC-CcccceEEcCeeeeCCC
Confidence 21 1 248999999999998754 45689999999986554
No 73
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.14 E-value=8.2e-06 Score=78.03 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCC-----Cceeeeccc--cCCccccccccHHHHH-HHHhc---
Q 012612 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLD--FFEKPAFLTVSGQLNA-ETYAT--- 214 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~--~~~~~~~L~~Spql~l-~l~~~--- 214 (460)
+++..|.+.+++.|.+.||.||.||.|..... .+.. +.|.+.... --+..++|+....... ++.+.
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 56788999999999999999999999987432 1111 234332110 0035567775443332 22221
Q ss_pred ---CC-CceEEEecccccCCCCC--CCCCCccceeeeeecCCC
Q 012612 215 ---AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 215 ---g~-~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~~~~~ 251 (460)
.+ -|+|++++|||+|.... -.-.-||+|.|++.-..+
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 12 37999999999997631 122469999999985444
No 74
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.12 E-value=4.3e-06 Score=81.67 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC----CC-----CCCceeeeccc--cCCccccccccHHHHH-----H
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLD--FFEKPAFLTVSGQLNA-----E 210 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg-----~~~~F~v~~~~--~~~~~~~L~~Spql~l-----~ 210 (460)
-.+++..|.+.+++.+.+.||.||.||.|.+... .| ..+.|.+.... -.+.+++|+...+-.. .
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 5788899999999999999999999999987432 11 12355553210 0123677877654433 2
Q ss_pred HHhcC--C-CceEEEecccccCCCCC--CCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 211 TYATA--L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 211 l~~~g--~-~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+.+. + =|+|++++|||+|...+ --=.-||+|.|.+..+.+.+++.+..++++...
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 22221 2 26899999999998632 001349999999999999998888888776543
No 75
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.09 E-value=2.4e-05 Score=76.53 Aligned_cols=116 Identities=20% Similarity=0.163 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CC------CCceeeeccccCC----ccccccccHHHHH-HHH
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA------GEQFCVTTLDFFE----KPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~------~~~F~v~~~~~~~----~~~~L~~Spql~l-~l~ 212 (460)
-.+++.+|.+.+++-+.+.||.||.||.|..... . |. .+.|.+.. --+ .+++|+...+... .+.
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~--~~~~~~~~~l~LrPt~e~~~~~~~ 108 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKD--AGDEELEEDFALRPTLEENIGEIA 108 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEe--CCCCccCceEEECCCCCHHHHHHH
Confidence 4667889999999999999999999999987332 1 11 23344431 112 5678876655432 222
Q ss_pred h----c--CCC-ceEEEecccccCCCCCCC---CCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 213 A----T--ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 213 ~----~--g~~-rvfeI~~~FR~E~~~~~r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
. . .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+.++..+..+.++..
T Consensus 109 ~~~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~ 170 (264)
T cd00772 109 AKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSA 170 (264)
T ss_pred HhhhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHH
Confidence 1 1 233 89999999999953 211 135999999998668888887777777744
No 76
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.08 E-value=1e-05 Score=78.77 Aligned_cols=116 Identities=21% Similarity=0.174 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHH-----HHHHHh
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQL-----NAETYA 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql-----~l~l~~ 213 (460)
-.+++..|.+.+++.|.+.||.||.||+|..... . | ..+.|.+. +--+.+++|+...+- +...+.
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~--d~~~~~l~LrPt~e~~~t~~~~~~i~ 107 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLK--DRHGKEFLLGPTHEEVITDLVANEIK 107 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEe--cCCCCeEEEecCCcHHHHHHHHhccc
Confidence 5678899999999999999999999999987221 1 1 12456553 222467888765432 222222
Q ss_pred c--CCC-ceEEEecccccC-CCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 214 T--ALS-NVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 214 ~--g~~-rvfeI~~~FR~E-~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
. .+. |+|++++|||+| ..... | .-||+|.|++....+..+..+..++++..
T Consensus 108 s~~~LPlr~~~~~~~FR~E~~~~~Gl~R-~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 108 SYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred cHhhCCHHHHhCcceecCCCCCCCceee-eeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 2 233 899999999999 43222 3 25999999999777766666655555543
No 77
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.02 E-value=4.5e-05 Score=82.29 Aligned_cols=122 Identities=17% Similarity=0.152 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--C------CCCCceeeeccccCCccccccccHHH-----HHHHH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLDFFEKPAFLTVSGQL-----NAETY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~~~~L~~Spql-----~l~l~ 212 (460)
.-.+++.+|.+.+|+.|.+.||.||.||.|.+... + -+.+.|.+. +-.+..++|+...|- +.+.+
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~--dr~~~~l~LrPT~Ee~~t~~~~~~i 122 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLK--DRKGREFVLGPTHEEVITDLARNEI 122 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEe--cCCCCEEEEcCCCcHHHHHHHHHHH
Confidence 45778899999999999999999999999998322 1 123567664 334667888864332 22233
Q ss_pred hcC--CC-ceEEEecccccC-CCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Q 012612 213 ATA--LS-NVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 270 (460)
Q Consensus 213 ~~g--~~-rvfeI~~~FR~E-~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li---~~l~~~~ 270 (460)
.+. +. |+|||++|||+| ..+.. | .-||+|.|.|.-..+.++.....+.++ ..+++.+
T Consensus 123 ~syr~LPlrlyqi~~~fR~E~rpr~Gl~R-~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 123 KSYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred hhccccCeEEEEeeCEeeCCCCCCCCccc-cccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 322 33 899999999999 43222 3 259999999997777666655555444 5555554
No 78
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.97 E-value=4.2e-05 Score=79.64 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCC----CCCceeeeccccCCccccccc--cHHHHHHHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLDFFEKPAFLTV--SGQLNAETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~ 212 (460)
..-.+.+..+...+++.|.+.||.||.||++.... ++. ..+.|.+. +--++.+.|+. .+++...+.
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~--d~~g~~l~LRpd~T~~~ar~~~ 92 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQ--DKGGRSLTLRPEGTAPVVRAVI 92 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEE--cCCCCEEEecCCCcHHHHHHHH
Confidence 44577888999999999999999999999996532 111 23455543 22466667764 344433332
Q ss_pred hc--CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 213 AT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 213 ~~--g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. .--|+|++++|||+|... ..|.-||+|+++|.-..+
T Consensus 93 ~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 93 EHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred hCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 22 235899999999999874 456689999999985443
No 79
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.93 E-value=4.2e-05 Score=76.19 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHHH-HHHh----
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA---- 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~---- 213 (460)
-.+++..|.+.+++.+.+.||.||.||+|..... .| ..+.|.++ --+..++|+....... .+.+
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~l~LRP~~~~~~~~~~~~~~~ 105 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE---EEDEEYGLKPMNCPGHCLIFKSKPR 105 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec---cCCceEEEcccCCHHHHHHHHhhcc
Confidence 5777899999999999999999999999977432 11 22355552 2235677765433322 2222
Q ss_pred c--CCC-ceEEEecccccCCCCC----CCCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 T--ALS-NVYTFGPTFRAENSNT----SRHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~--g~~-rvfeI~~~FR~E~~~~----~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. .+. |+|++++|||+|.+.+ .| .-||+|.|++.- ...++..+.+++++.
T Consensus 106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R-~reF~q~e~~i~-~~~e~~~~e~~e~l~ 161 (298)
T cd00771 106 SYRDLPLRLAEFGTVHRYEQSGALHGLTR-VRGFTQDDAHIF-CTPDQIKEEIKGVLD 161 (298)
T ss_pred chhhCCeEEEEecCcccCCCCCCCCCccc-cccEEECCEEEE-eCCcchHHHHHHHHH
Confidence 1 232 8999999999997631 12 249999999985 333444333333333
No 80
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.90 E-value=7.9e-05 Score=80.71 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--C------CCCCceeeeccccCCccccccccHHHHH-HHH---
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETY--- 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~--- 212 (460)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- + -..+.|.+. +--+++++|+...+-.. .++
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~--d~~~~~l~LrPt~e~~~~~~~~~~ 121 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLK--DRHGRDFVLGPTHEEVITDLVRNE 121 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEe--cCCCCEEEECCCChHHHHHHHHhh
Confidence 345778999999999999999999999999986322 1 123466654 33467788886444222 221
Q ss_pred -hcC--C-CceEEEecccccC-CCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Q 012612 213 -ATA--L-SNVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 270 (460)
Q Consensus 213 -~~g--~-~rvfeI~~~FR~E-~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li---~~l~~~~ 270 (460)
.+. + -|+|||++|||+| ..+.. | .-||+|.|.|....+.++.....++++ ..+++.+
T Consensus 122 ~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R-~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 122 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred hhhcccCCeEEEEeeCCccCCCCCCCcccc-cccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 121 2 3799999999999 33222 2 259999999997766555444444444 4455443
No 81
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.89 E-value=1.3e-05 Score=77.88 Aligned_cols=95 Identities=25% Similarity=0.204 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhhhhCC--ceeecCceeecCCCCCCCCceeeecc--ccCCccccccc--cHH---HHHHHHhcC--
Q 012612 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTL--DFFEKPAFLTV--SGQ---LNAETYATA-- 215 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~g--F~EV~TPiL~~~~~eg~~~~F~v~~~--~~~~~~~~L~~--Spq---l~l~l~~~g-- 215 (460)
-.+++..|.+.+|+.|...| |.||+||+|.+. ..|.+..- +.-+..++|+. +|. .+++.....
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCC
Confidence 47788999999999999885 999999999986 45654200 11234567764 321 233433222
Q ss_pred -C-CceEEEecccccCCCCC---CCCCCccceeeeeec
Q 012612 216 -L-SNVYTFGPTFRAENSNT---SRHLAEFWMIEPELA 248 (460)
Q Consensus 216 -~-~rvfeI~~~FR~E~~~~---~rHl~EFt~lE~e~~ 248 (460)
+ =|+||||+|||+|.+-. .| .-||||.|+|.-
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R-~ReF~q~d~~~f 141 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFR-VREFTQAEIEFF 141 (254)
T ss_pred CCCchhhhhchhhccccCcccceee-eccchhhheeee
Confidence 2 27999999999997522 12 469999999973
No 82
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=8.6e-05 Score=73.86 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=57.1
Q ss_pred CceeecCceeecCCCCCCCCceeeecc------c-cCCccccccccHHHHH-HHHhcCCCceEEEecccccCCCCCCCCC
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTL------D-FFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHL 237 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~------~-~~~~~~~L~~Spql~l-~l~~~g~~rvfeI~~~FR~E~~~~~rHl 237 (460)
.-.+..||+.+....-+.-- |+-++. . |-+....|+..--.|. +++..|.+.--..|-|||...+ +++|.
T Consensus 94 s~~~~~spvvt~~qnfdsl~-~p~dh~sr~ksdtyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthy 171 (436)
T KOG2783|consen 94 SIFENESPVVTTYQNFDSLL-FPADHVSRSKSDTYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHY 171 (436)
T ss_pred hhccCCCceeehhhhccccc-CcccccccCcCCceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-ccccc
Confidence 34788899888754422110 111110 2 3355666777666775 6888889998999999999988 57999
Q ss_pred CccceeeeeecCC
Q 012612 238 AEFWMIEPELAFA 250 (460)
Q Consensus 238 ~EFt~lE~e~~~~ 250 (460)
|=|.|+|.-.-++
T Consensus 172 pvfhq~eg~~~~s 184 (436)
T KOG2783|consen 172 PVFHQMEGVRLWS 184 (436)
T ss_pred ceeccccceeEEe
Confidence 9999999776654
No 83
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.75 E-value=0.0001 Score=81.01 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCCC-----ceeeeccccCCccccccccHHHHH-HHHhcCC
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGE-----QFCVTTLDFFEKPAFLTVSGQLNA-ETYATAL 216 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~~-----~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~ 216 (460)
.-..++..|.+.+++.+.+.||.||.||+|....- .|..+ .|.+ +--++.++|+...+... .+....+
T Consensus 272 ~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~---d~~~~~~~LrP~~~~~~~~~~~~~~ 348 (639)
T PRK12444 272 KGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFS---EVDNKSFALKPMNCPGHMLMFKNKL 348 (639)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCee---cCCCcEEEEccCCCHHHHHHHhCcc
Confidence 34556777999999999999999999999987422 22222 3322 11245667876665543 3333221
Q ss_pred -------CceEEEecccccCCCCC--C--CCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 217 -------SNVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 217 -------~rvfeI~~~FR~E~~~~--~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
-|+|++|+|||.|.+.+ . | .-||+|.|++ .|.+-+++.+..++++..+
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~~~~~~~ 407 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIKSVMAQI 407 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHHHHHHHH
Confidence 38999999999997632 1 2 2489999999 6888777666655555443
No 84
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.74 E-value=0.00011 Score=76.36 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCC-------CCceeeeccccCCccccccccHHHHHH-HHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLDFFEKPAFLTVSGQLNAE-TYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~ 214 (460)
.....++...+++.+++.+.+.||.||.||.|.+... ++. .+.|.++ +..+||....+..+- +...
T Consensus 169 ~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~-----~~~~~L~pTsE~~~~~~~~~ 243 (418)
T TIGR00414 169 KNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE-----DTDLYLIPTAEVPLTNLHRN 243 (418)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec-----CCCEEEEeCCcHHHHHHHhC
Confidence 3467888999999999999999999999999998433 222 2345442 356788877666553 2221
Q ss_pred C------C-CceEEEecccccCCCC------CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 A------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 g------~-~rvfeI~~~FR~E~~~------~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
- + =|+|++++|||+|-.. +--=.-||+|.|.+ .|.+-++..+..++++...
T Consensus 244 ~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~~~~~ 307 (418)
T TIGR00414 244 EILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCKPEESAEELEEMTSDA 307 (418)
T ss_pred cCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcCHHHHHHHHHHHHHHH
Confidence 1 2 3699999999999531 10013499999994 5888888877777766654
No 85
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.73 E-value=0.00012 Score=76.46 Aligned_cols=116 Identities=17% Similarity=0.293 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHhhh-hCCceeecCceeecCCC-CCC-------CCceeeeccccCCccccccccHHHHHH-HHhc
Q 012612 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDC-EGA-------GEQFCVTTLDFFEKPAFLTVSGQLNAE-TYAT 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~ 214 (460)
....++...+++.+++.+. +.||.||.||.|.+... ++. .+.|.++ +.++||....|..+- ++..
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~-----~~~~~L~pTsE~~l~~l~~~ 241 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE-----DDDLYLIPTAEVPLTNLHRD 241 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec-----CCCEEEEeCCcHHHHHHHhc
Confidence 3577889999999999998 99999999999998433 222 1344442 467888877776653 3332
Q ss_pred C------C-CceEEEecccccCCCCC--CC----CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 A------L-SNVYTFGPTFRAENSNT--SR----HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 g------~-~rvfeI~~~FR~E~~~~--~r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
- + =|+|++++|||+|-... .+ =.-||+|.|.+ +|..-++..+..++++...
T Consensus 242 ~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~ 305 (425)
T PRK05431 242 EILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANA 305 (425)
T ss_pred ccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHH
Confidence 2 2 37999999999996411 01 13499999999 5887788877777777654
No 86
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=3.9e-05 Score=75.66 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC--------------CCCCCCceeeecc--------cc--------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD--------------CEGAGEQFCVTTL--------DF-------- 194 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~--------------~eg~~~~F~v~~~--------~~-------- 194 (460)
+-.+++|++ +|++|-+.||.|..|---+.+. .-.+.|.|.+..+ +|
T Consensus 212 HPLmKvR~e----FRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH 287 (483)
T KOG2784|consen 212 HPLMKVREE----FRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVH 287 (483)
T ss_pred chHHHHHHH----HHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHH
Confidence 446676655 6889999999999887654331 1233444544322 00
Q ss_pred ----CC-------------cccccc-----ccHHHHHHHHhcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 195 ----FE-------------KPAFLT-----VSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 195 ----~~-------------~~~~L~-----~Spql~l~l~~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
|| ++.-|+ +|.-+.-+|.-.|| .|+|.|-+|||||.. +.+||.||.|+|--.+-.
T Consensus 288 ~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~ 366 (483)
T KOG2784|consen 288 EQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQVEGVIADK 366 (483)
T ss_pred hcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhcccc-chHHHHHHhhhceeeecC
Confidence 11 112233 23322224445666 579999999999999 689999999999877754
Q ss_pred --CHHHHHHHHHHHHHHH
Q 012612 251 --DLKDDMACATAYLQYV 266 (460)
Q Consensus 251 --~~~~~~~~~e~li~~l 266 (460)
++-++|.++++++..+
T Consensus 367 gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 367 GLTLGDLIGILMEFFTKL 384 (483)
T ss_pred CCcHHHHHHHHHHHHhcc
Confidence 6889999888877653
No 87
>PLN02908 threonyl-tRNA synthetase
Probab=97.66 E-value=0.00017 Score=79.75 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CC-----CCceeeeccccCCccccccccHHHHH-HHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
+.-.-.+++..|++.+|+.+.+.||.||.||.|.+..- . |. .+.|.+ +--+..++|+....... .+..
T Consensus 316 ~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~---~~~~~~~~Lrp~~~~~~~~~~~ 392 (686)
T PLN02908 316 FLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF---EIEKQEFGLKPMNCPGHCLMFA 392 (686)
T ss_pred EechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE---ecCCeeEEEcCCCcHHHHHHHh
Confidence 34567889999999999999999999999999987432 1 11 124444 22246677775544433 2222
Q ss_pred cC------C-CceEEEecccccCCCC---CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 269 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~---~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~ 269 (460)
.- + =|+|++++|||+|.+. +-.=.-||+|.|++. |.+.+++.+.+++++..+..-
T Consensus 393 ~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v 457 (686)
T PLN02908 393 HRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYV 457 (686)
T ss_pred ccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHH
Confidence 11 1 1799999999999772 111134899999998 888888888888877665443
No 88
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.66 E-value=0.00025 Score=69.93 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCC---CCCCceeeeccccCCccccccc--cHHHHHHHHhc-----C
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT-----A 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e---g~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~-----g 215 (460)
.-...+..+.+.+++.|...||-||+||++--...- ...+.|.+. +.-|+.+-||. .+++-. +++. .
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~--D~~g~~l~LRpD~T~~iaR-~~a~~~~~~~ 93 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFS--DEKNHQISLRADSTLDVVR-IVTKRLGRST 93 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEE--CCCCCEEEECCcCCHHHHH-HHHHhcccCC
Confidence 456788899999999999999999999999764331 223455543 33455556662 333332 2222 1
Q ss_pred -CCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHH
Q 012612 216 -LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYV 266 (460)
Q Consensus 216 -~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l 266 (460)
--|.|++++|||.|. .||+|+.+|.-.. +..|++.++-+.++.+
T Consensus 94 ~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 94 EHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred CceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 238999999999873 4999999999766 4656666666555544
No 89
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.65 E-value=0.00011 Score=73.20 Aligned_cols=116 Identities=17% Similarity=0.281 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CC-----CCceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
-...+++.+|.+.+++.+.+.||.||.||.|.+... + |- .+.|.+. +.+++|+...+... .+...-
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-----~~~~~L~pt~e~~~~~l~~~~ 123 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-----GEDLYLIATAEVPLAALHRDE 123 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec-----CCCEEEeecCCHHHHHHHhcc
Confidence 346788999999999999999999999999998433 2 21 2345542 25678887776655 333221
Q ss_pred ------C-CceEEEecccccCCC------CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~------~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+ =|+|++++|||+|.. .+---.-||+|.|.+. |..-++..+..++++...
T Consensus 124 ~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~~ 186 (297)
T cd00770 124 ILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISNA 186 (297)
T ss_pred cCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHHH
Confidence 2 379999999999965 1111246999999974 665566666665555443
No 90
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.61 E-value=0.00021 Score=77.65 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCC-----CCceeeeccccCCccccccccH-HHHHHHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLDFFEKPAFLTVSG-QLNAETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~L~~Sp-ql~l~l~~ 213 (460)
.+-.-.+++..|.+.+++.+.+.||.||.||+|....- .|. .+.|.+. +--++.++|+.-. ..+-++.+
T Consensus 201 ~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~--d~~~~~~~LRP~~~~~~~~~~~ 278 (575)
T PRK12305 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPM--EIDEEEYYLKPMNCPGHILIYK 278 (575)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccccc--ccCCceEEEecCCCHHHHHHHh
Confidence 34567788999999999999999999999999987422 122 1345442 2235667777322 22222222
Q ss_pred c------CCC-ceEEEecccccCCCCCCC---CCCccceeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 012612 214 T------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 269 (460)
Q Consensus 214 ~------g~~-rvfeI~~~FR~E~~~~~r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~ 269 (460)
. .+. |.|++|+|||+|.+...+ =.-||+|.|++. |.+.+...+.+.+++..+..-
T Consensus 279 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~~~ 343 (575)
T PRK12305 279 SRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVLEL 343 (575)
T ss_pred cccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 1 232 899999999999773111 125999999995 767666666555555554443
No 91
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.59 E-value=0.0004 Score=75.32 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCC-----CceeeeccccCCccccccccHHHHH-HHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~ 214 (460)
+-.-.+++..|.+.+|+.+.+.||.||.||++....- .|.. +.|.++ +--++.++|+....... ++.+.
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~--d~~~~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFT--ELDNREFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceec--cCCCceEEEecCCCHHHHHHHhC
Confidence 4456778899999999999999999999999986422 1222 244432 22246788886554432 33322
Q ss_pred C------C-CceEEEecccccCCCCCC-----CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 215 A------L-SNVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 215 g------~-~rvfeI~~~FR~E~~~~~-----rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. + -|+|++|+|||+|.+ +. |- -||+|.|+|.- ...++.....++++.
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~-~~~~~~~~e~~~~i~ 332 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQS-GELHGLMRV-RGFTQDDAHIF-CTEDQIKEEFKNQFR 332 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCC-cCCcCcccc-cceEEeeeEEE-cCHHHHHHHHHHHHH
Confidence 1 2 389999999999955 32 32 49999999974 334544444333333
No 92
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00036 Score=73.11 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCC----CCceeeeccccCCccccccc--cHHHHHHHHh
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLDFFEKPAFLTV--SGQLNAETYA 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~ 213 (460)
.-...|..+.+.+++.|...||-||.||++-... ++.. .+.|.+. +.-++.+.|+. .|++..-...
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~--d~~g~~l~LRpd~T~~iaR~~~~ 93 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFT--DRSNRDITLRPEGTAGIVRAFIE 93 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEE--cCCCCEEEeCCCCcHHHHHHHHH
Confidence 4566789999999999999999999999997632 1111 2455543 23356667773 3444322111
Q ss_pred -----cCC-CceEEEecccccCCCCCCCCCCccceeeeeecCCC-H---HHHHHHHHHHHHH
Q 012612 214 -----TAL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 265 (460)
Q Consensus 214 -----~g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~---~~~~~~~e~li~~ 265 (460)
... -|.|++|+|||.|.+...|- -||+|+++|.-..+ . -|++.++-+.++.
T Consensus 94 ~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~ 154 (430)
T CHL00201 94 NKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEVIHLAMQIFNE 154 (430)
T ss_pred ccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHHHHHHHHHHHH
Confidence 112 38999999999998766665 59999999986553 2 2455554444443
No 93
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.56 E-value=0.00017 Score=76.28 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC------CCCceeeeccc--cCCccccccccHHHHH-HHH--
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ETY-- 212 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l~-- 212 (460)
-.+++..|.+.+++-+.+.||.||.||.|.+..- +| ..+.|.++... -.+.+++|+...+-.. .+.
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 3566899999999999999999999999977322 12 23466665321 1246788887665433 222
Q ss_pred --hcC--C-CceEEEecccccCCCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 213 --ATA--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 213 --~~g--~-~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+. + -|+||+++|||+|...+. -=.-||+|-|.+..+.+.++..+..+.++...
T Consensus 117 ~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 117 WVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred cccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 221 2 278999999999986310 11359999999998999888877777766543
No 94
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.55 E-value=0.0005 Score=72.19 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--C-C-----CCCceeeeccccCCccccccccH-HH----HHHHH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E-G-----AGEQFCVTTLDFFEKPAFLTVSG-QL----NAETY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e-g-----~~~~F~v~~~~~~~~~~~L~~Sp-ql----~l~l~ 212 (460)
.-.+++.+|.+.+|+-+.+.||.||.||.|.+..- . | ..+.|.+. +--+.+++|+... +. ++..+
T Consensus 45 ~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~--d~~~~~~~L~Pt~e~~~~~~~~~~~ 122 (439)
T PRK12325 45 LGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIK--DRHDREMLYGPTNEEMITDIFRSYV 122 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEe--cCCCCEEEEcCCCcHHHHHHHHHHh
Confidence 35788999999999999999999999999997411 0 1 12466653 2235677777533 22 22222
Q ss_pred hc--CC-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 213 AT--AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 213 ~~--g~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
.+ .+ -|+||++++||+|.. + +| .-||+|-|.|....+.+++.+..++++..
T Consensus 123 ~syrdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~ 180 (439)
T PRK12325 123 KSYKDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVA 180 (439)
T ss_pred hhchhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHHHHHHHHH
Confidence 22 13 479999999999954 2 32 46999999998767877776655555543
No 95
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.54 E-value=0.00046 Score=69.02 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCCCCceeeeccccCCcccccccc--HHHHHHHHhc--
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLDFFEKPAFLTVS--GQLNAETYAT-- 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~L~~S--pql~l~l~~~-- 214 (460)
..-.+.+..+.+.+++.|.+.||.+|+||++.... ++...+.|.+. +--|..+-|+-- +++. ++++.
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~--D~~G~~l~LR~D~T~~ia-R~~a~~~ 83 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFL--DRSGRVLALRPDLTVPIA-RYVARNL 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEE--CTTSSEEEE-SSSHHHHH-HHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEE--ecCCcEeccCCCCcHHHH-HHHHHhc
Confidence 34578889999999999999999999999997642 22223455543 335666666632 2332 33332
Q ss_pred ---CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC-HH---HHHHHHHHHHH
Q 012612 215 ---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQ 264 (460)
Q Consensus 215 ---g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~~---~~~~~~e~li~ 264 (460)
-..|+|++|+|||.+... ..+.-||+|+.+|.-..+ .. |++.++-+++.
T Consensus 84 ~~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 84 NLPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp GSSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CcCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 246799999999999763 345589999999987654 44 66666666665
No 96
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.54 E-value=0.00037 Score=72.16 Aligned_cols=118 Identities=19% Similarity=0.123 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CCCCCceeeecccc-CCccccccc--cHHHHHHHHhc
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLDF-FEKPAFLTV--SGQLNAETYAT 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~-~~~~~~L~~--Spql~l~l~~~ 214 (460)
..-.+.|..+...+++.|.+.||.||.||++..... +...+.|.+. +. -|..+.|+. .+++- ++++.
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~--d~~~g~~l~LRpD~T~~ia-R~~a~ 90 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLV--DQLSGRTLGLRPDMTAQIA-RIAAT 90 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEe--ecCCCCEEEECCCCcHHHH-HHHHH
Confidence 345678899999999999999999999999964211 1122355443 33 355566662 33332 33322
Q ss_pred C------CCceEEEecccccCCCCCCCCCCccceeeeeecCCC-H---HHHHHHHHHHHHHH
Q 012612 215 A------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQYV 266 (460)
Q Consensus 215 g------~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~---~~~~~~~e~li~~l 266 (460)
. --|+|++++|||.|.... -+.-||+|+.+|.-..+ . -|++.++-+.+..+
T Consensus 91 ~~~~~~~p~r~~y~g~vfR~~~~~~-gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 91 RLANRPGPLRLCYAGNVFRAQERGL-GRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred hccCCCCCeEEEeeceeeecCCCcC-CCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 1 238999999999997743 34579999999986553 2 35566665555554
No 97
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.52 E-value=0.00045 Score=76.06 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHH-HHHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLN-AETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~-l~l~~ 213 (460)
.+-.-.+++..|.+.+++.+.+.||.||.||++....- .| ..+.|.+. +--++.+.|+....-. -++.+
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~--d~~~~~~~LRP~~~~~~~r~~~ 342 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTT--ESDGEEYALKPMNCPGHVQIYK 342 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceee--cCCCcEEEEecCCcHHHHHHHh
Confidence 34566788999999999999999999999999976321 12 12345542 2235667776422221 23222
Q ss_pred c------CC-CceEEEecccccCCCCC--C--CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 T------AL-SNVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~------g~-~rvfeI~~~FR~E~~~~--~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. .+ -|+|++|+|||+|.+.. . | .-||||.|++. |.+-+...+.+.+++.
T Consensus 343 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~~~~~-~g~~~~~~~e~~eii~ 402 (638)
T PRK00413 343 QGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMR-VRGFTQDDAHI-FCTPEQIEEEVKKVID 402 (638)
T ss_pred CcCCChhhCCceeeeccCeecCCCCCCCcCcce-eeeeEEeeEEE-EcCHHHHHHHHHHHHH
Confidence 1 22 28999999999998732 1 2 24999999997 6554444433334443
No 98
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.00033 Score=75.09 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCC-----CceeeeccccCCccccccccHHHHH-HHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
+.-.-.++|..|...+|+.+.+.||.||.||.+....- .|.- +.|.+ +--+++++|+.-..... .+..
T Consensus 163 ~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~---~~~~e~~~LrPm~cp~~~~~~~ 239 (545)
T PRK14799 163 FHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF---NMEGDEYGVKPMNCPAHILIYK 239 (545)
T ss_pred EcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee---eccCceEEeccCCCHHHHHHHh
Confidence 34567889999999999999999999999999866322 1111 23433 22256777775444433 2222
Q ss_pred cC------C-CceEEEecccccCCCCC----CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSNT----SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 269 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~~----~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~ 269 (460)
.. + =|+||+|+|||+|.+.. .| .-||||.|+.. |.+.+++.+.+.+++.-+..-
T Consensus 240 ~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~R-vReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~v 304 (545)
T PRK14799 240 SKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLR-VRGFVQDDGHI-FLREDQLREEIKMLISKTVEV 304 (545)
T ss_pred ccccChhhCCHhhEEecceecCCCCCCcccccc-ceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 21 1 27899999999998842 13 35999999998 888887777776666655443
No 99
>PLN02972 Histidyl-tRNA synthetase
Probab=97.46 E-value=0.0007 Score=74.47 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCCCCceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
.+-.-...|..|...+++.|...||.||+||++-... ++.....|... +.-|+.+.|+----.-. ++++..
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~--D~gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLA--DQGGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEE--CCCCCEEEeCCCChHHHHHHHHhC
Confidence 4556678899999999999999999999999986522 22222345443 33455566663221211 433321
Q ss_pred ---CCceEEEecccccCCCCCCCCCCccceeeeeecCC-C-H---HHHHHHHHHHHHHH
Q 012612 216 ---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 266 (460)
Q Consensus 216 ---~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~-~---~~~~~~~e~li~~l 266 (460)
--|.|+|++|||.|..... +.-||+|+++|.... + . -|++.++-+.+..+
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkG-R~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L 471 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKG-RYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL 471 (763)
T ss_pred CCCcceEEEeccEEecCCCCCC-CCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC
Confidence 2367889999999977433 457999999999764 2 2 36666666666544
No 100
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.45 E-value=0.00027 Score=74.95 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-C-----CCCceeeeccc--cCCccccccccHHH-----HH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLD--FFEKPAFLTVSGQL-----NA 209 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g-----~~~~F~v~~~~--~~~~~~~L~~Spql-----~l 209 (460)
.-.+++..|.+.+++.|.+.||.||.||.|.+..- + + ..+.|.|+... -.+.+++|+...+- +.
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~ 121 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYK 121 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHH
Confidence 35788899999999999999999999999977422 1 2 22466664321 12467888866533 22
Q ss_pred HHHhcC--C-CceEEEecccccCCCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 210 ETYATA--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 210 ~l~~~g--~-~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
+.+.+. + =|+||+++|||+|.. +. -=.-||+|.|.+..+.+.++..+..++++.
T Consensus 122 ~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 122 KWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred hhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 322222 2 268999999999976 33 124599999999999998888777777664
No 101
>PLN02530 histidine-tRNA ligase
Probab=97.42 E-value=0.00087 Score=71.35 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------C-CCCCceeeeccccCCccccccc--cHHHHHHHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------E-GAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------e-g~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~ 214 (460)
+-.-.+.|..|...+++.|...||.||.||++-.... + ...+.|... +.-|+.+.|+. .+++. ++++.
T Consensus 80 lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~--D~~g~~l~LRpD~T~~ia-R~~~~ 156 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFE--DKGGRRVALRPELTPSLA-RLVLQ 156 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEE--CCCCCEEecCCCCcHHHH-HHHHh
Confidence 3456778999999999999999999999999976321 1 122345432 33456666663 23332 33322
Q ss_pred C-----C-CceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHH
Q 012612 215 A-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQY 265 (460)
Q Consensus 215 g-----~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~ 265 (460)
. + -|.|++++|||.|.....| .-||+|+.+|.-..+ --|++.++.+.+..
T Consensus 157 ~~~~~~~P~r~~y~g~vfR~e~~q~gr-~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~ 216 (487)
T PLN02530 157 KGKSLSLPLKWFAIGQCWRYERMTRGR-RREHYQWNMDIIGVPGVEAEAELLAAIVTFFKR 216 (487)
T ss_pred cccccCCCeEEEEEcCEEcCcCCCCCC-ccceEEcCeeEeCCCCcchhHHHHHHHHHHHHH
Confidence 1 2 3899999999999874444 579999999986543 12555555554443
No 102
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.40 E-value=0.00067 Score=73.84 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CC-CCCceeeeccccCCccccccccHHHHHH-----
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLDFFEKPAFLTVSGQLNAE----- 210 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg-~~~~F~v~~~~~~~~~~~L~~Spql~l~----- 210 (460)
.-.-.+++..|.+.+++.+.+.||.+|.||.+..... ++ ..+.|.++. -+..++|+...+...=
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~---~~e~l~Lrp~~c~~~~~~~~~ 299 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS---DKKDLMLRFAACFGQFLMLKD 299 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC---CCceEEEecCCCHHHHHHHhC
Confidence 4567889999999999999999999999998854311 11 224565532 2466777754443221
Q ss_pred HHhcC--C-CceEEEec-ccccCCCCC---CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHH
Q 012612 211 TYATA--L-SNVYTFGP-TFRAENSNT---SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 270 (460)
Q Consensus 211 l~~~g--~-~rvfeI~~-~FR~E~~~~---~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~ 270 (460)
...+. + =|+||+++ |||+|.+.. -.=.-||||-|++.--.+.++.++..++++..+..-+
T Consensus 300 ~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 300 MTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred CcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 11111 2 36899999 999997521 1124599999999855568999988888887765543
No 103
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.35 E-value=0.001 Score=68.78 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CCCCCceeeecccc-CCcccccc--ccHHHHHHHHh-
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLDF-FEKPAFLT--VSGQLNAETYA- 213 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~-~~~~~~L~--~Spql~l~l~~- 213 (460)
-.-.+.+..+.+.+++.|...||.||+||++..... +.....|.+. +. -|+.+-|+ ..+++-. +.+
T Consensus 18 p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~--D~~~g~~l~LRpD~T~~iaR-~~a~ 94 (392)
T PRK12421 18 PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLI--DQLSGRLMGVRADITPQVAR-IDAH 94 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEE--cCCCCcEEEECCcCCHHHHH-HHHh
Confidence 345678899999999999999999999999975321 1112344432 22 24445555 2333332 221
Q ss_pred ----cCCCceEEEecccccCCCCCCCCCCccceeeeeecCCC-HH---HHHHHHHHHHHHH
Q 012612 214 ----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQYV 266 (460)
Q Consensus 214 ----~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~~---~~~~~~e~li~~l 266 (460)
..--|.|.+++|||.+.....|. -||+|+.+|.-..+ .. |++.++-+.++.+
T Consensus 95 ~~~~~~p~R~~Y~g~VfR~~~~~~gr~-rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 95 LLNREGVARLCYAGSVLHTLPQGLFGS-RTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred hcCCCCceEEEEeeeEEEcCCCcCCCc-CccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 12358999999999987644444 79999999986553 33 6677766666655
No 104
>PLN02837 threonine-tRNA ligase
Probab=97.34 E-value=0.00067 Score=74.17 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHHH-----H
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQLN-----A 209 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql~-----l 209 (460)
+.-.-.+++.+|++.+++...++||.||.||.|..... .+.+ +.|.+. +--+..+.|+.+.+-. +
T Consensus 242 ~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~--~~~~~~y~l~p~~~p~~~~~~~ 319 (614)
T PLN02837 242 WHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQM--DIEDELYQLRPMNCPYHILVYK 319 (614)
T ss_pred EechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhccccc--CCCCceEEECCCCcHHHHHHHh
Confidence 34567889999999999999999999999999998433 2211 234331 1112334555544332 2
Q ss_pred HHHhc--CC-CceEEEecccccCCCCCCC----CCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 210 ETYAT--AL-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 210 ~l~~~--g~-~rvfeI~~~FR~E~~~~~r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
..+.+ .+ =|++|+++|||+|.+ +.+ =.-||+|.|.+. |.+.+++.+..++++...-.
T Consensus 320 ~~~~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~ 383 (614)
T PLN02837 320 RKLHSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEE 383 (614)
T ss_pred CccCChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 11111 12 368999999999976 221 134899999996 99888888888887775543
No 105
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.32 E-value=0.0013 Score=68.71 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-----CCC----CCceeeeccccCCccccccc--cHHHHHHHH
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-----EGA----GEQFCVTTLDFFEKPAFLTV--SGQLNAETY 212 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----eg~----~~~F~v~~~~~~~~~~~L~~--Spql~l~l~ 212 (460)
+-.-..++..+.+.+++.|...||.||.||+|..... +.+ .+.|.+. +--|+.+.|+. .+++- +++
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~--D~~g~~l~LRpD~T~~ia-R~v 90 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLT--DQGKRDLALRYDLTIPFA-KVV 90 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEe--cCCCceecccccccHHHH-HHH
Confidence 3445777889999999999999999999999977321 111 2345443 33466666663 22332 323
Q ss_pred hc--C--CC-ceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHHH
Q 012612 213 AT--A--LS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYV 266 (460)
Q Consensus 213 ~~--g--~~-rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~l 266 (460)
+. . .. |.|++++|||.|.... -+.-||+|+.+|.-..+ --|++.++-+.++.+
T Consensus 91 a~~~~~~~p~r~~y~g~vfR~~~~~~-gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 91 AMNPNIRLPFKRYEIGKVFRDGPIKQ-GRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred HhCcCCCCCeeEEEEcceECCCCCCC-CccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 22 2 22 7899999999997643 45689999999986543 246666666555543
No 106
>PLN02678 seryl-tRNA synthetase
Probab=97.12 E-value=0.00071 Score=70.70 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHH-----HH-HH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQL-----NA-ET 211 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql-----~l-~l 211 (460)
...+++..+++.+++++.++||.||.||.|..... ++++ +.|.+.. -+.+.||.-..|. |. +.
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~---~~~~~yLi~TaE~~l~~~h~~~~ 248 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTG---EGDDKYLIATSEQPLCAYHRGDW 248 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecC---CCCceeeecccccccChHHhccc
Confidence 56889999999999999999999999999987433 3322 2343321 1123454433211 11 11
Q ss_pred H-hcCC-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCCHHH--HHHHHHHHHHHH
Q 012612 212 Y-ATAL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKD--DMACATAYLQYV 266 (460)
Q Consensus 212 ~-~~g~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~~~~--~~~~~e~li~~l 266 (460)
+ -..+ =|++++++|||+|-+... + =.-+|+++|.. +|..-++ ..+..|+|+...
T Consensus 249 ~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 249 IDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred CCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHHH
Confidence 1 1112 379999999999975211 1 12489999995 4655555 666666666553
No 107
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=97.06 E-value=0.0015 Score=68.93 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=36.8
Q ss_pred ceEEEecccccCCCCCCCCC----CccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl----~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
|+.|+|+|||+|-+ + +|- -||||.|.+ .|.+.+++.+.+..++..+..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 69999999999976 4 442 799999997 588877776666666655443
No 108
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.03 E-value=0.0048 Score=63.41 Aligned_cols=109 Identities=21% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC------CC-CCCceeeeccccCCccccccc--cHHHHHHHHh---cCCCce
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLDFFEKPAFLTV--SGQLNAETYA---TALSNV 219 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg-~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~---~g~~rv 219 (460)
..+.+.+++.|.+.||.||+||++..... +. ..+.|.+. +--|+.+.|+. .+++-...+. ..--|+
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~--D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTS--DENGEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEE--CCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 47888999999999999999999976431 11 12345443 33355666662 2333322222 223489
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecCC-C-H---HHHHHHHHHHHHHH
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 266 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~-~---~~~~~~~e~li~~l 266 (460)
|++++|||.|.. | .-||+|+.+|.-.. + . -|++.++-+.+..+
T Consensus 86 ~Y~g~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999999822 2 36999999999663 3 2 37777777766654
No 109
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=97.00 E-value=0.0062 Score=47.38 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=54.0
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~i 111 (460)
|.|.|=|.+.+..++-+|+.|+|.. ..|.|++-+... ...... +..||-|.|.|.+.- + .+.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~--a~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~--~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDET--GTVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-R--DGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCC--EEEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-C--CeEEEEEEeeEEE
Confidence 4678888876446667899999987 359998765432 111234 899999999999875 3 3479999999887
Q ss_pred E
Q 012612 112 V 112 (460)
Q Consensus 112 l 112 (460)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 110
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.98 E-value=0.011 Score=46.23 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.3
Q ss_pred EEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 012612 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 32 V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ 110 (460)
++|.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+ ..|..|+.|.|+|++...+.+ +.+.+.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 578899988885 45599999999985 5899887753 33332 249999999999999965322 35888887764
No 111
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.72 E-value=0.023 Score=46.25 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=56.2
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch--hhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
|++.|+|.++...+.-.=+.|.|+||. |.+.+....... ..... +..|++|.|.|++..-+ +...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~---g~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGT--IEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQ---GKKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCc--EEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccC---CeeEEEEEEE
Confidence 789999999998755555679999974 998887654211 12344 99999999999997654 2577777777
Q ss_pred EEEecC
Q 012612 110 VLVGKS 115 (460)
Q Consensus 110 ~ils~~ 115 (460)
..+...
T Consensus 75 ~~v~d~ 80 (95)
T cd04478 75 RPVTDF 80 (95)
T ss_pred EEeCCc
Confidence 755543
No 112
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=96.55 E-value=0.023 Score=53.65 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhhh-----CCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHHHh--cCC
Q 012612 150 VRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAETYA--TAL 216 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~--~g~ 216 (460)
...+.|..|+++|.. .+.+.|..|+++....+ |...|-..+..+.-+..+-..+|-.-||++.. .+|
T Consensus 5 ~tq~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f 84 (244)
T PF03590_consen 5 ETQKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGF 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCC
Confidence 346677888888854 69999999999985442 22223222222333667778889889998543 366
Q ss_pred ---CceEEEecccc-cCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhc
Q 012612 217 ---SNVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 272 (460)
Q Consensus 217 ---~rvfeI~~~FR-~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~ 272 (460)
+.+|+=+.+.| +|+.-+..|.--.-|.|||+....-+.-++.+.+.++.++..+..
T Consensus 85 ~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik~ 144 (244)
T PF03590_consen 85 PPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIKE 144 (244)
T ss_dssp -TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHH
T ss_pred CCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHHH
Confidence 57999999999 886558999999999999999876667778888888887776654
No 113
>PLN02320 seryl-tRNA synthetase
Probab=96.40 E-value=0.0077 Score=63.60 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCCC--------ceeeeccccCCccccccccHH-----HHH-HH
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE--------QFCVTTLDFFEKPAFLTVSGQ-----LNA-ET 211 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~--------~F~v~~~~~~~~~~~L~~Spq-----l~l-~l 211 (460)
..++...+++.++++..++||.||.||.|..... ++++. .|.+ -+.++||.-..| +|. +.
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i-----e~ed~~Li~TaE~Pl~~~~~~~i 306 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI-----DGSDQCLIGTAEIPVGGIHMDSI 306 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE-----CCCceEEeecccccccccccccc
Confidence 4557788999999999999999999999998544 33332 2222 145667743222 232 22
Q ss_pred H-hcCC-CceEEEecccccCCCCCCC------CCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 212 Y-ATAL-SNVYTFGPTFRAENSNTSR------HLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 212 ~-~~g~-~rvfeI~~~FR~E~~~~~r------Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
+ -..+ =|+.+.++|||.|-+...+ -.-+|++.|... |...+++.+..++|+..+-.
T Consensus 307 ls~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 307 LLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred cCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 2 1122 3789999999999551110 123899999875 77888888888888776543
No 114
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.34 E-value=0.032 Score=46.08 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCEEEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
-+.|.|.|=|.+.+. .++-+|++|+|+. ..++|++-... +..+....++.|+-|.|.|.+.--+.. |.+.+.|.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~--~~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSR--ARRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHH--HhhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 367999999999998 6888999999987 57999988653 122220128999999999999775543 36888888
Q ss_pred EEE
Q 012612 108 KIV 110 (460)
Q Consensus 108 ~i~ 110 (460)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
No 115
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.014 Score=60.28 Aligned_cols=115 Identities=17% Similarity=0.299 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCC-CCCC-------ceeeeccccCCccccccccHHHHH-HH-----
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGE-------QFCVTTLDFFEKPAFLTVSGQLNA-ET----- 211 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~-------~F~v~~~~~~~~~~~L~~Spql~l-~l----- 211 (460)
.+.++--.+++.+=++..++||.|+.+|.|...... |.+. .|.+. +..+||....+.-+ .+
T Consensus 172 ~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~-----~~~~~LipTaEvpl~~l~~~Ei 246 (429)
T COG0172 172 KGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVE-----DPDLYLIPTAEVPLTNLHRDEI 246 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEec-----CCCEEEEecchhhhHHhhcccc
Confidence 356666677778888888999999999999985542 2222 23332 23678887776654 22
Q ss_pred Hh-cCCC-ceEEEecccccCCCCCC---C---CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 212 YA-TALS-NVYTFGPTFRAENSNTS---R---HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 212 ~~-~g~~-rvfeI~~~FR~E~~~~~---r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+. ..+. +++-.++|||.|..... | -.-+|.++|.-. |...++..+..|+|+...
T Consensus 247 l~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~a 308 (429)
T COG0172 247 LDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNA 308 (429)
T ss_pred cccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHH
Confidence 22 2233 57779999999954211 1 123899999865 677888877778777654
No 116
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.20 E-value=0.052 Score=44.22 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=50.1
Q ss_pred EEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-------------------hhhHhccCCCCCcEEEEEeeEee
Q 012612 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-------------------YDQVKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 34 v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-------------------~~~~~~~~l~~g~~V~V~G~v~~ 94 (460)
|.|+|.+++......-+.|.|+|| .|-|++...... .+.... +.+|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG--~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTG--VVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCc--eEEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 679999999875556668999997 499988764320 023345 999999999999986
Q ss_pred cCCCCceEEEEEeEEE
Q 012612 95 SQGSKQKVELKVNKIV 110 (460)
Q Consensus 95 ~~~~~~~~El~~~~i~ 110 (460)
=.. ...|.++.+.
T Consensus 78 frg---~~ql~i~~~~ 90 (92)
T cd04483 78 YRG---EREINASVVY 90 (92)
T ss_pred cCC---eeEEEEEEEE
Confidence 543 3556665543
No 117
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.19 E-value=0.03 Score=54.99 Aligned_cols=105 Identities=15% Similarity=0.027 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--CCC----CCceeeeccccCCcccccc--ccHHHHHHHHh---
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA----GEQFCVTTLDFFEKPAFLT--VSGQLNAETYA--- 213 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~----~~~F~v~~~~~~~~~~~L~--~Spql~l~l~~--- 213 (460)
+..+..+.++.+.+++.|.+.||-||+||++-.... ..+ ...|..-. +.-|+.+-|| ..|++-. +.+
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~-~~~Gr~laLRpD~T~~iAR-~~a~~~ 81 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFW-QHEHQIYALRNDFTDQLLR-YYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeee-cCCCCEEEEcCCCCHHHHH-HHHhcC
Confidence 455677888999999999999999999999954322 111 11111100 1235666666 3455543 222
Q ss_pred cCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHH
Q 012612 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 259 (460)
Q Consensus 214 ~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~ 259 (460)
.+..|.|.+++|||++. +|+|+-+|.-..+.+...+.+
T Consensus 82 ~~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE--------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred CCCceEEEeccEeccCC--------CcceeceEEECCCchhHHHHH
Confidence 24569999999999873 489999998764444444444
No 118
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.013 Score=61.82 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CC-CCCceeeeccccCCccccccccHHH-H--H-HHHhc
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLDFFEKPAFLTVSGQL-N--A-ETYAT 214 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg-~~~~F~v~~~~~~~~~~~L~~Spql-~--l-~l~~~ 214 (460)
-++++.+|.+.+|+-|++.|..||--|+|+++.- ++ +.++|.++.. -+.++.|+...|- . + +.-+.
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~dr--g~~~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDR--GDRPLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEcc--CCceeeeCCCcHHHHHHHHHHHhh
Confidence 5788899999999999999999999999998422 22 2357777644 3788888865543 2 1 22222
Q ss_pred C---C-CceEEEecccccCCC--CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 215 A---L-SNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 215 g---~-~rvfeI~~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
. + =++|||..+||+|-- ..---.-||+|=|.|..+.|.+++.+..++++..
T Consensus 124 SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~ 180 (500)
T COG0442 124 SYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDA 180 (500)
T ss_pred hhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 2 2 369999999999943 0111256999999999999999998888887753
No 119
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.12 E-value=0.027 Score=59.38 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhh-hhCCceeecCceeecCCC---CCCC-----Cceeeeccc----cC-----------------
Q 012612 146 AVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAG-----EQFCVTTLD----FF----------------- 195 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~----~~----------------- 195 (460)
..+++...+.+.+.+.+ .+.||.|+-+|.|.+... +|.. +.|.|++.. .+
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 45667788888887655 556999999999998433 2222 234453210 00
Q ss_pred -----C-ccccccccHHHHH-HHHhc------CC-CceEEEe-cccccCCC--CCCCCCCccceeeeeecCCCHHHHHHH
Q 012612 196 -----E-KPAFLTVSGQLNA-ETYAT------AL-SNVYTFG-PTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMAC 258 (460)
Q Consensus 196 -----~-~~~~L~~Spql~l-~l~~~------g~-~rvfeI~-~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~~ 258 (460)
. .+++|+.+.+... .+... .+ -++++++ +|||.|.. ++-.=.-||+|.|+-. +.+.++..+.
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~ 379 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEI 379 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHH
Confidence 1 1566888777765 23222 22 3689955 79999974 2222245999999988 8899999998
Q ss_pred HHHHHHHH
Q 012612 259 ATAYLQYV 266 (460)
Q Consensus 259 ~e~li~~l 266 (460)
.++++...
T Consensus 380 ~e~mle~~ 387 (520)
T TIGR00415 380 RDKTLELA 387 (520)
T ss_pred HHHHHHHH
Confidence 88888653
No 120
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.0076 Score=62.96 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhh--CCceeecCceeec
Q 012612 148 ARVRNALAYATHKFFQE--NGFIWISSPIITA 177 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~--~gF~EV~TPiL~~ 177 (460)
..++..|+++.|++|.. .+++||+||+|.+
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 45678899999999965 5899999999976
No 121
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=96.10 E-value=0.05 Score=44.24 Aligned_cols=74 Identities=19% Similarity=0.410 Sum_probs=53.6
Q ss_pred EEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 33 ~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
.|.|.|.+.+. .++-+|+.|.|.++ .|.+++-+....+.. ... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998865 46678889999874 588877654311112 234 99999999999986542 5888888
Q ss_pred EEEecCC
Q 012612 110 VLVGKSD 116 (460)
Q Consensus 110 ~ils~~~ 116 (460)
++++...
T Consensus 72 ~~~glg~ 78 (91)
T cd04482 72 RVIRLAR 78 (91)
T ss_pred EECCCcc
Confidence 8876643
No 122
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=96.07 E-value=0.0087 Score=63.52 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHh-hhhCCceeecCceeecCCC---CCCC-----Cceeeecc----ccCC---------------
Q 012612 145 GAVARVRNALAYATHKF-FQENGFIWISSPIITASDC---EGAG-----EQFCVTTL----DFFE--------------- 196 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~f-f~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~----~~~~--------------- 196 (460)
..-.++...+.+.+++. ..+.||.||.||.|.+... .|.. +.|.|+.. ++++
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 45678888899999887 4666999999999987433 1222 24444321 0000
Q ss_pred --------ccccccc--cHHHHHH---HHhcCCC---ceEE-EecccccCCC--CCCCCCCccceeeeeecCCCHHHHHH
Q 012612 197 --------KPAFLTV--SGQLNAE---TYATALS---NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 257 (460)
Q Consensus 197 --------~~~~L~~--Spql~l~---l~~~g~~---rvfe-I~~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~ 257 (460)
..+.|+. -|-+|.- -+...-+ |+|+ .|+|||+|.. ++-.=.-||+|.|+- .|.+.+++.+
T Consensus 300 ~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 300 KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 0112221 2222211 1112222 7899 5599999942 111123599999998 6899999999
Q ss_pred HHHHHHHH
Q 012612 258 CATAYLQY 265 (460)
Q Consensus 258 ~~e~li~~ 265 (460)
..++++.+
T Consensus 379 e~e~ll~~ 386 (517)
T PRK00960 379 IRDELLKY 386 (517)
T ss_pred HHHHHHHH
Confidence 99999844
No 123
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=95.54 E-value=0.085 Score=51.23 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=55.7
Q ss_pred CCCCEEEEEEEEeeeccC----CCeEEEEEEcCCCccceEEEEeCCccc--hhhHhccCCCCCcEEEEEeeEeecCCCCc
Q 012612 27 RVGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~----g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (460)
++=+.|+|.|.|.++... .+.+|+.|-|+||...|.|++..+... --.+.. + .|++|.|+|++. .+
T Consensus 64 hPI~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~ 135 (256)
T PF10451_consen 64 HPIRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RN 135 (256)
T ss_dssp EEE-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SS
T ss_pred cccEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cC
Confidence 344679999999999765 778999999999833689988864210 011334 6 999999999998 23
Q ss_pred eEEEEEeEEEEEe
Q 012612 101 KVELKVNKIVLVG 113 (460)
Q Consensus 101 ~~El~~~~i~ils 113 (460)
..+|.++.+.++.
T Consensus 136 ~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 136 ERQLDVERIELVR 148 (256)
T ss_dssp SEEEEEEEEEEET
T ss_pred cEEEEEEEEEccC
Confidence 6888998888764
No 124
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.022 Score=59.95 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=56.1
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
+.|+.|.|.|-|..++.-++-+-+.|+|++|. +++.+-... +...... +++||+|.|.|.|..+... +.|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~a-GvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEEA-GVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhccC-CcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 78999999999999998765566689999976 887543211 1111234 9999999999999887543 55555
Q ss_pred eEEEEE
Q 012612 107 NKIVLV 112 (460)
Q Consensus 107 ~~i~il 112 (460)
..++.|
T Consensus 283 ~~me~L 288 (715)
T COG1107 283 EAMEKL 288 (715)
T ss_pred hhhHHh
Confidence 555544
No 125
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=95.39 E-value=0.11 Score=43.11 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=51.5
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
..++++++.+. ..+..|++.|.|.+.-..-+ ...+|.+| .|+|-++.+. |.- .. +++++-|.+.
T Consensus 21 ~~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d~---Y~F~D~TG--~I~VeId~~~--w~g-~~--vt~~~~Vri~ 84 (103)
T PF04076_consen 21 TVTTVAQAKNA------KDDTPVTLEGNIVKQLGDDK---YLFRDATG--EIEVEIDDDV--WRG-QT--VTPDDKVRIS 84 (103)
T ss_dssp ----HHHHTTS-------SSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEE--GGG--STT-------TTSEEEEE
T ss_pred CeEeHHHHhhC------cCCCeEEEEEEEEEEecCCE---EEEECCCC--cEEEEEChhh--cCC-cc--cCCCCEEEEE
Confidence 34677787653 56788999999876554433 34799996 4887776542 221 23 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEE
Q 012612 90 GNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ 110 (460)
|+|.+.-. ..||.|..|+
T Consensus 85 GeVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 85 GEVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEEETT---EEEEEEEEEE
T ss_pred EEEeCCCC---ceEEEEEEEE
Confidence 99996542 5888887764
No 126
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=95.38 E-value=0.19 Score=39.63 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=48.6
Q ss_pred EEEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchh--hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 32 V~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~--~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
|+++|-|.++|. .|+. |+.|.|.+|. +.+++-++ .|+ ..+. .|..+.+|.|+|++... . + .+.+.
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~--~~~~~~~~~-~l~~d~~v~v~g~v~~~--~--~-~l~~~ 70 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKD--KEELFEEAE-DILPDEVIGVSGTVSKD--G--G-LIFAD 70 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCc--hhhhhhhhh-hccCCCEEEEEEEEecC--C--C-EEEEE
Confidence 678899988873 2566 9999999964 99988865 355 4432 48899999999999542 2 2 55555
Q ss_pred EE
Q 012612 108 KI 109 (460)
Q Consensus 108 ~i 109 (460)
++
T Consensus 71 ~I 72 (79)
T cd04490 71 EI 72 (79)
T ss_pred Ee
Confidence 43
No 127
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=95.19 E-value=0.22 Score=37.17 Aligned_cols=67 Identities=18% Similarity=0.405 Sum_probs=49.0
Q ss_pred EEEEEeeeccC---CCeEEEEEEcCC-CccceEEEEeCCccchhhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 34 VAGWVRTLRAQ---SSVTFIEVNDGS-CLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 34 v~GwV~~~R~~---g~~~Fv~lrD~~-~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
+.|.|.+++.. +.++++.|.|++ + .+.+++-.+. ++.. .. +..|+.|.|+|++.... +...+.+.+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~--~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGG--TIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCC--EEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 67888888764 378999999999 5 4888887642 2222 34 89999999999997642 346666654
Q ss_pred E
Q 012612 109 I 109 (460)
Q Consensus 109 i 109 (460)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 3
No 128
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=95.17 E-value=0.17 Score=42.84 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=58.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (460)
.+++++..+- +.+..|++.|-|.+.- ++=.| ..||+|| .|+|-++... |.- .. +++.|-|.++|
T Consensus 45 ~~TV~~Ak~~------~Dda~V~l~GnIv~qi--~~D~y-~FrD~sG--eI~VeIdd~~--w~g-~t--v~P~dkV~I~G 108 (128)
T COG3111 45 VTTVDQAKTL------HDDAWVSLEGNIVRQI--GDDRY-VFRDASG--EINVDIDDKV--WNG-QT--VTPKDKVRIQG 108 (128)
T ss_pred eeEHHHhhcc------ccCCeEEEEeeEEEee--CCceE-EEEcCCc--cEEEEecccc--cCC-cc--cCcccEEEEEe
Confidence 4566665553 5678899999985433 33344 4899997 4999887653 111 23 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEE
Q 012612 91 NVVPSQGSKQKVELKVNKIVLV 112 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~il 112 (460)
.+-+.-. ..||.|+.|+.+
T Consensus 109 evDk~~~---~~eIdV~~I~k~ 127 (128)
T COG3111 109 EVDKDWN---SVEIDVKHIEKL 127 (128)
T ss_pred EEcCCCc---cceeEhhheEec
Confidence 9987522 588888888764
No 129
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.96 E-value=0.15 Score=55.34 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC--CC---CC--CceeeeccccC-CccccccccHHHHH-HHHh---cCC--
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC--EG---AG--EQFCVTTLDFF-EKPAFLTVSGQLNA-ETYA---TAL-- 216 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg---~~--~~F~v~~~~~~-~~~~~L~~Spql~l-~l~~---~g~-- 216 (460)
..++.+.+|++|...||.|+-|..+++..- +. .. +...+. |-. ..-.+||+|-=--+ +.+. .+.
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~--NPls~e~svLRtsLlpgLL~~~~~N~~~~~~ 438 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVL--NPISEDYTVVRTSLLPSLLEFLSNNKHREYP 438 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEc--CCCccchheEeccchHHHHHHHHhccCCCCC
Confidence 456677899999999999999999987521 10 01 123332 222 23356777643332 4332 222
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 265 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~ 265 (460)
-|+||||+||+.+.. +..|..|++++-+-++.. |+.++...+|.++..
T Consensus 439 ~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 439 QKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred eeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 279999999998653 345778999999887764 788888888888754
No 130
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=94.86 E-value=0.13 Score=54.10 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..+.+|.|+|++.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~~-~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERISE-LLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999753 2 4999999999975 99988764 3555542 499999999999997632 357
Q ss_pred EEEEeEEEEE
Q 012612 103 ELKVNKIVLV 112 (460)
Q Consensus 103 El~~~~i~il 112 (460)
.+.+.++.-+
T Consensus 351 ~liv~~i~~l 360 (449)
T PRK07373 351 QLIVEDAEPI 360 (449)
T ss_pred EEEEeEeecH
Confidence 7777776533
No 131
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=0.035 Score=59.86 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCCCceeeeccccCCccccccccH--HHHHHHHh-------
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLDFFEKPAFLTVSG--QLNAETYA------- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~~~F~v~~~~~~~~~~~L~~Sp--ql~l~l~~------- 213 (460)
.=..+|+.+.+.+|.-..+.||.||.||.+....- .|.. +.|....|+..+. ++.++-|.
T Consensus 218 kG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~--------~~y~e~mf~~~~~~~~~~lKpmNCpgh~~i 289 (589)
T COG0441 218 KGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHW--------DNYKEDMFLTESDDREYALKPMNCPGHILI 289 (589)
T ss_pred CcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccch--------hhccccceeeccCChhheeeeccCHhHHHH
Confidence 34578999999999999999999999999987433 2222 2233444444443 22222111
Q ss_pred --cC-------CCceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHHHHHHH
Q 012612 214 --TA-------LSNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 270 (460)
Q Consensus 214 --~g-------~~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~ 270 (460)
.. --|++|+|.|||.|.+ +.-| +-+|||=|.-. |+..+++.+.+.+.+..+..-.
T Consensus 290 fk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 290 FKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred HhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHH
Confidence 11 1488999999999987 3444 57899999765 6778888888877777665544
No 132
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.17 Score=46.69 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=65.0
Q ss_pred cceeeeccccCCc-cC--CC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCC
Q 012612 9 RKKLKIVDVKGGP-NE--GL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (460)
Q Consensus 9 ~~~~~i~~l~~~~-~~--~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l 80 (460)
.+-++||+|.+.. +. ++ ...=..|.+.|||.++..+..-+|+.|.||+|. |-|-..+.... .++.+. +
T Consensus 39 LrpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~ 114 (258)
T COG5235 39 LRPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--L 114 (258)
T ss_pred eeeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--c
Confidence 3458999998743 11 11 011134789999999999977788899999975 88877766533 233556 7
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ 110 (460)
..|-.|.|.|.++.=.. ...|....|.
T Consensus 115 ~~~~yvkV~G~lk~F~G---K~~I~~~~i~ 141 (258)
T COG5235 115 EEQNYVKVNGSLKTFNG---KRSISASHIS 141 (258)
T ss_pred ccccEEEEecceeeeCC---eeEEehhhee
Confidence 78889999999976433 3556554443
No 133
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=94.53 E-value=0.62 Score=36.23 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=45.6
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecC
Q 012612 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 45 g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~ 115 (460)
+.++++.|.|++|. +.+++-.+.. ..... +..|.+|.|.|++.... +..++.+.++..+...
T Consensus 18 ~~~~~~~l~D~tg~--i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 18 KPYLALTLQDKTGE--IEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTEE 79 (83)
T ss_pred CcEEEEEEEcCCCe--EEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCcc
Confidence 45899999999974 8998876432 22334 99999999999997632 2588888888755543
No 134
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=94.51 E-value=0.45 Score=40.97 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (460)
-.++++..+- ..+..|++.|.|.+.-..-. ...+|++|. |+|-++.+. |.- .. ++++|-|.+.|
T Consensus 45 ~~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d~---Y~F~D~TG~--I~VeId~~~--w~G-~~--v~p~d~V~I~G 108 (126)
T TIGR00156 45 KMTVDFAKSM------HDGASVTLRGNIISHIGDDR---YVFRDKSGE--INVVIPAAV--WNG-RE--VQPKDMVNISG 108 (126)
T ss_pred eEeHHHHhhC------CCCCEEEEEEEEEEEeCCce---EEEECCCCC--EEEEECHHH--cCC-Cc--CCCCCEEEEEE
Confidence 4667776653 56788999999977654432 357999974 888876532 111 13 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEE
Q 012612 91 NVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~ 110 (460)
+|-+.-. ..||.|+.|+
T Consensus 109 eVDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 109 SLDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred EECCCCC---CeEEEEEEEE
Confidence 9986432 4777777765
No 135
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=94.47 E-value=0.12 Score=45.50 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=49.8
Q ss_pred eeeeccccCCccC-----CCCCCCCEEEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCc
Q 012612 11 KLKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (460)
Q Consensus 11 ~~~i~~l~~~~~~-----~~~~~~~~V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (460)
..+..+|.+.|.+ ..++.|+.|.|.|.|.++.. .++-.++...+..+...++|.++.+........+ |+.||
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~ 121 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQ 121 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTS
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCC
Confidence 3556666665521 23567999999999999976 3555666666655556799988876533334456 99999
Q ss_pred EEEEEeeEeec
Q 012612 85 SIWIQGNVVPS 95 (460)
Q Consensus 85 ~V~V~G~v~~~ 95 (460)
-|.|+|++.--
T Consensus 122 ~Vti~G~~~g~ 132 (144)
T PF12869_consen 122 KVTIKGICTGY 132 (144)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEEEEee
Confidence 99999998654
No 136
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=94.45 E-value=0.19 Score=38.93 Aligned_cols=72 Identities=21% Similarity=0.405 Sum_probs=48.8
Q ss_pred EEEEEeeecc----CC-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 34 v~GwV~~~R~----~g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
+.|.|.+++. .| .++++.|.|++|. +.+++-.+ .|+..+. .+..|..|.|.|++.... +..++.+.+
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~-~l~~g~~v~v~G~v~~~~---~~~~l~~~~ 73 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRD-LLKEDALLLVEGKVERRD---GGLRLIAER 73 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHH-HhcCCCEEEEEEEEEecC---CceEEEeec
Confidence 4566655432 23 4899999999974 88887753 3433321 399999999999998743 357888776
Q ss_pred EEEEe
Q 012612 109 IVLVG 113 (460)
Q Consensus 109 i~ils 113 (460)
+..+.
T Consensus 74 i~~~~ 78 (84)
T cd04485 74 IEDLE 78 (84)
T ss_pred cccHH
Confidence 65443
No 137
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=94.42 E-value=0.051 Score=58.26 Aligned_cols=30 Identities=37% Similarity=0.534 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhh-hCCceeecCceeec
Q 012612 148 ARVRNALAYATHKFFQ-ENGFIWISSPIITA 177 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~ 177 (460)
..++..|.+..|++|. +.+++||+||+|++
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 6678899999999994 77899999999976
No 138
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.01 E-value=0.21 Score=49.93 Aligned_cols=121 Identities=25% Similarity=0.245 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCC-----C--CC-CCCceeeeccccCCccccccccHHHHH-HHHhcCCC
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-----C--EG-AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATALS 217 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-----~--eg-~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~~ 217 (460)
-+|.-.++...++.-|++-|=.+|.-|+|++.. + ++ +.+.|.+. +--++.+.|+..-|=-- .+|+.-..
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~--Dr~gkq~cL~pThEE~iT~lmat~~~ 128 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLH--DRKGKQMCLTPTHEEDITALMATYIP 128 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEee--ccCCCEeccCCchHHHHHHHHHhcCc
Confidence 466678899999999999999999999998732 2 11 34667653 56678888886665543 56665544
Q ss_pred --------ceEEEecccccCCC-CC--CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHh
Q 012612 218 --------NVYTFGPTFRAENS-NT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 271 (460)
Q Consensus 218 --------rvfeI~~~FR~E~~-~~--~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~ 271 (460)
+||||++=||+|-- +. -| --||.|=|+|. |.+-++--..+-.++......+.
T Consensus 129 lsykqlPi~vYQigrKfRDElrpRfGLlR-gREFlMKDmYs-Fd~~~etA~qTy~~v~~aY~~iF 191 (457)
T KOG2324|consen 129 LSYKQLPIRVYQIGRKFRDELRPRFGLLR-GREFLMKDMYS-FDSDEETAQQTYQLVDQAYDRIF 191 (457)
T ss_pred cccccCcEEeeeechhhhhccCccccchh-hHHHHHhhhhc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999932 11 11 25999999997 65444444445555555555554
No 139
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=93.91 E-value=0.32 Score=51.38 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhh--hCCceeecCceeecCCC---CCCCCce-----------------------------------
Q 012612 148 ARVRNALAYATHKFFQ--ENGFIWISSPIITASDC---EGAGEQF----------------------------------- 187 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~~---eg~~~~F----------------------------------- 187 (460)
..++..|++.-|++|. ..+.+||+||+|++..- -|.-+.|
T Consensus 40 ~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~ 119 (539)
T PRK14894 40 VELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPR 119 (539)
T ss_pred HHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCCCCCcCCCcce
Confidence 5567889999999884 56778999999865211 0111111
Q ss_pred ------eeeccccCC--ccccccc--cHHHH---HHHHhcCCC----ceEEEecccccCCCCCCCC----CCccceeeee
Q 012612 188 ------CVTTLDFFE--KPAFLTV--SGQLN---AETYATALS----NVYTFGPTFRAENSNTSRH----LAEFWMIEPE 246 (460)
Q Consensus 188 ------~v~~~~~~~--~~~~L~~--Spql~---l~l~~~g~~----rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e 246 (460)
.+.--..-+ ..+|||. +--.+ +.++-..-. .+-|||++||||-+ .|. .-||+|+|+|
T Consensus 120 ~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIs--Pr~~l~R~REF~q~EiE 197 (539)
T PRK14894 120 PFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEIN--PRNFLFRVREFEQMEIE 197 (539)
T ss_pred eccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccC--CCCceeecccchhheEE
Confidence 100000011 4588883 22223 344433322 37899999999943 332 5799999999
Q ss_pred ecCCCH
Q 012612 247 LAFADL 252 (460)
Q Consensus 247 ~~~~~~ 252 (460)
. |.+-
T Consensus 198 ~-Fv~P 202 (539)
T PRK14894 198 Y-FVMP 202 (539)
T ss_pred E-EeCC
Confidence 7 5543
No 140
>PRK14699 replication factor A; Provisional
Probab=93.41 E-value=0.56 Score=49.83 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=66.2
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec-------cC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R-------~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+|+||.. ..+.|++.|+|.++- .. |+++=+.|-|.||. |.+++..+... .+..+.|.
T Consensus 58 ~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a~--~~~~g~l~ 125 (484)
T PRK14699 58 VKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMAD--LIKAGKIK 125 (484)
T ss_pred ccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCccc--hhhhcCCC
Confidence 46777743 346799999999983 22 56666788999974 99999876432 12312299
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCC
Q 012612 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (460)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~ 122 (460)
+||+|.|.|.++.-. +..||.+.....+.++....+.+
T Consensus 126 ~GDvv~I~~~~r~~~---~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 126 AGQTLQISGYAKQGY---SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred CCCEEEEcceeccCC---CCceEEeCCCceeeccCcccccC
Confidence 999999999754322 24788888777777765445543
No 141
>PRK10053 hypothetical protein; Provisional
Probab=93.30 E-value=0.69 Score=40.05 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=56.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (460)
.+++++..+- ..+..|++.|.|.+.=..- . ...+|++|. |+|-++.+. | ...-++++|-|.+.|
T Consensus 49 ~~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG~--I~VeID~~~--w---~G~~v~p~~kV~I~G 112 (130)
T PRK10053 49 KMTVEQAKTM------HDGATVSLRGNLIDHKGDD--R-YVFRDKSGE--INVIIPAAV--F---DGREVQPDQMINING 112 (130)
T ss_pred eEEHHHhhcC------cCCCeEEEEEEEEEEeCCc--e-EEEECCCCc--EEEEeCHHH--c---CCCcCCCCCEEEEEE
Confidence 3567776553 5678899999996554333 2 347999974 888876542 1 111299999999999
Q ss_pred eEeecCCCCceEEEEEeEEE
Q 012612 91 NVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~ 110 (460)
.|-+.-. ..||.|+.|+
T Consensus 113 evDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 113 SLDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred EECCCCC---CeEEEEEEEe
Confidence 9987532 4788888775
No 142
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=93.26 E-value=0.36 Score=56.05 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeccC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 012612 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El 104 (460)
.+..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |+..+. .|..|.++.|+|++... .+.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~~-~l~~~~~~~v~g~v~~~---~~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQRR-EALGARLLLVRGRVQNA---EGVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEec---CCeEEE
Confidence 46789999999988652 34999999999975 999887652 555442 48999999999999864 235788
Q ss_pred EEeEEEEEec
Q 012612 105 KVNKIVLVGK 114 (460)
Q Consensus 105 ~~~~i~ils~ 114 (460)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8887765544
No 143
>PRK15491 replication factor A; Provisional
Probab=93.18 E-value=0.58 Score=48.11 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=66.2
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee-------ccC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~-------R~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l 80 (460)
-++|+||... ...|+|.|||.++ |.. |++.=+.|-|.+| ++++++..+..+ .+..+.|
T Consensus 57 ~~kI~dL~~~--------~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~l 124 (374)
T PRK15491 57 TTKIADINES--------SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDI 124 (374)
T ss_pred cccHHHCCCC--------CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCc
Confidence 3578888543 3669999999988 222 4666678999996 499999876432 1221239
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCC
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~ 118 (460)
..|+++.|.|.++..-. .+||.+..-..+.+|...
T Consensus 125 e~G~v~~I~~~~~~~y~---g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 125 EVGKSLNISGYAKEGYS---GIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCCEEEEeeeeccCcc---cEEEEeCCCceeeecccc
Confidence 99999999998554332 389999888888888643
No 144
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=93.00 E-value=0.36 Score=56.47 Aligned_cols=77 Identities=9% Similarity=0.215 Sum_probs=58.7
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.+..|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~~-~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLSD-HLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999998752 2 4999999999975 99988764 3555542 499999999999997642 357
Q ss_pred EEEEeEEEEE
Q 012612 103 ELKVNKIVLV 112 (460)
Q Consensus 103 El~~~~i~il 112 (460)
.+.+.++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7777776544
No 145
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=92.47 E-value=1.2 Score=36.82 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
+.|+.|++-|+|.+.+.. . +.+.+..| +.++|.++... . +..+-.|.|.|+|.. ...|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 689999999999999854 2 34555444 35888887642 3 778889999999964 345566
Q ss_pred eEEEEEe
Q 012612 107 NKIVLVG 113 (460)
Q Consensus 107 ~~i~ils 113 (460)
..+.-++
T Consensus 73 ~~~~~~g 79 (101)
T cd04479 73 LSYIDFG 79 (101)
T ss_pred EEEEECC
Confidence 5554444
No 146
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=92.15 E-value=0.64 Score=38.97 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=38.4
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (460)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.+.... . +..+..|.|.|+|....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977775544445653 5787776542 2 66789999999997643
No 147
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=92.12 E-value=0.7 Score=54.15 Aligned_cols=80 Identities=15% Similarity=0.309 Sum_probs=59.8
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~~-~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYRS-LLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecCC--Cce
Confidence 46789999999998752 3 3999999999975 99988764 3555442 4999999999999975432 247
Q ss_pred EEEEeEEEEEec
Q 012612 103 ELKVNKIVLVGK 114 (460)
Q Consensus 103 El~~~~i~ils~ 114 (460)
.+.+.++.-+..
T Consensus 1063 ~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1063 KLICEEIEPLVI 1074 (1151)
T ss_pred EEEEeeeecHhh
Confidence 778877764443
No 148
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.99 E-value=0.36 Score=49.49 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceee------cCCCCCCCCceeeeccccCCcccc----ccccHHHHHHH-Hhc
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIIT------ASDCEGAGEQFCVTTLDFFEKPAF----LTVSGQLNAET-YAT 214 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~------~~~~eg~~~~F~v~~~~~~~~~~~----L~~Spql~l~l-~~~ 214 (460)
+-+.+|..|.+.|.+-|...|..+|+||++- .-.+|...-.+-.. +--|+-.. |+++=.-|+-+ -+.
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlk--DQGGEl~SLRYDLTVPfARylAmNki~ 149 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLK--DQGGELCSLRYDLTVPFARYLAMNKIT 149 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehh--hcCCcEEEeecccccHHHHHHHHcccc
Confidence 3578899999999999999999999999754 33333332122111 22232222 33332333311 122
Q ss_pred CCCceEEEecccccCCCC-CCCCCCccceeeeeecC
Q 012612 215 ALSNVYTFGPTFRAENSN-TSRHLAEFWMIEPELAF 249 (460)
Q Consensus 215 g~~rvfeI~~~FR~E~~~-~~rHl~EFt~lE~e~~~ 249 (460)
.+. -|+||++||.+... |.--.-||+|+|+-.+.
T Consensus 150 sik-Ry~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 150 SIK-RYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred cce-eeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 233 49999999987552 11134699999998874
No 149
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=91.98 E-value=0.6 Score=43.44 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhhCCceeecCceeecC-CCC----CCCCceeeeccccC-CccccccccHHHHH-HHH----hcCC--Cce
Q 012612 153 ALAYATHKFFQENGFIWISSPIITAS-DCE----GAGEQFCVTTLDFF-EKPAFLTVSGQLNA-ETY----ATAL--SNV 219 (460)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~-~~e----g~~~~F~v~~~~~~-~~~~~L~~Spql~l-~l~----~~g~--~rv 219 (460)
.+.+.+|++|...||.|+-|..+++. ... ...++..+. |-. ..-.+||+|-=--+ +.+ ..+. -|+
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~--NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~l 81 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELS--NPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEc--CCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeE
Confidence 45677899999999999999999875 211 111222222 211 12234555432222 221 1232 379
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHH
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQY 265 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~ 265 (460)
||||+||..+.. +..|.+.+=+-.+. .|+.++...+|.++..
T Consensus 82 FEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~ 136 (198)
T cd00769 82 FEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRA 136 (198)
T ss_pred EEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHH
Confidence 999999976431 22455555433332 2666777777776654
No 150
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.97 E-value=0.45 Score=55.65 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|++.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|++|.|+|++.... +..
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999762 3 4999999999974 99988764 3555432 399999999999997642 357
Q ss_pred EEEEeEEEEEec
Q 012612 103 ELKVNKIVLVGK 114 (460)
Q Consensus 103 El~~~~i~ils~ 114 (460)
.+.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 788877765544
No 151
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=91.97 E-value=1 Score=41.28 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=53.8
Q ss_pred CCCCEEEEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchhhHhcc--CCCCCcEEEEEeeEeecCCCCceE
Q 012612 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG--LITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~--~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
...+.|+|.|-|.+.+. ++++.++.|.|++| +|-+++..+....-.++.+ -+..|++|+|+|.+..-+.. .
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtG--ti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~---~ 123 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTG--TITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS---S 123 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCC--cEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC---c
Confidence 45677889999999984 48899999999996 4998887654211111100 16689999999999876543 5
Q ss_pred EEEEe
Q 012612 103 ELKVN 107 (460)
Q Consensus 103 El~~~ 107 (460)
||.+.
T Consensus 124 eVkvn 128 (204)
T COG4085 124 EVKVN 128 (204)
T ss_pred eeecc
Confidence 55543
No 152
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=91.22 E-value=0.94 Score=52.78 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCCEEEEEEEEeeeccC-----CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~-----g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|+|+|.|.++|.. +.++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++... .+..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~---~~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPE--TYIHFSD-KLQEGAIVLVDGTIELR---NHKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEec---CCcE
Confidence 46689999999998652 35999999999975 99988764 3555442 49999999999999764 2356
Q ss_pred EEEEeEEEEEe
Q 012612 103 ELKVNKIVLVG 113 (460)
Q Consensus 103 El~~~~i~ils 113 (460)
.+.+.++.-+.
T Consensus 1014 ~~~~~~i~~l~ 1024 (1107)
T PRK06920 1014 QWIVNGLYPLE 1024 (1107)
T ss_pred EEEEeecccHH
Confidence 77777765443
No 153
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=91.15 E-value=3.8 Score=35.57 Aligned_cols=85 Identities=21% Similarity=0.402 Sum_probs=51.9
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEe--eecc---CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEE
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~--~~R~---~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V 86 (460)
.+..|+.... ...++.|+|.|+|. ++.. ...+.|. |.|+. +.+.|+.....++ +.+.|..|
T Consensus 37 ~t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-------~F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-------LFREGQGV 102 (131)
T ss_dssp E-TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-------T--TTSEE
T ss_pred cCHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-------cccCCCeE
Confidence 4566676541 24789999999998 5543 3668875 78886 5699988765432 27779999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCCCC
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~ 118 (460)
.|+|+.... + ..+++ +||.||+..
T Consensus 103 Vv~G~~~~~--g----~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 103 VVEGRLGED--G----VFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEEECCT--S----EEEEE--EEEETS---
T ss_pred EEEEEECCC--C----EEEEE--EEEeCCCCC
Confidence 999998331 1 23344 688898643
No 154
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=91.09 E-value=0.53 Score=48.34 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C---C-CCCceeeeccccCCccccccc--cHHHHH---HHHhcC
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC---E---G-AGEQFCVTTLDFFEKPAFLTV--SGQLNA---ETYATA 215 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e---g-~~~~F~v~~~~~~~~~~~L~~--Spql~l---~l~~~g 215 (460)
.+....|.+.+++.|...||..|+||+|...++ + . -...|.+. +-.+..+.||. .++.-. ..+.+.
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~--d~~g~~l~LRpD~T~pVaR~~~~~~~~~ 94 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLE--DETGGRLGLRPDFTIPVARIHATLLAGT 94 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEe--cCCCCeEEecccccHHHHHHHHHhcCCC
Confidence 455677888889999999999999999998655 2 1 12477765 55666677772 444443 234455
Q ss_pred CCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 216 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 216 ~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
-.|+...|++||+.+....+ ..||+|.=+|.=..
T Consensus 95 P~Rl~Y~G~Vfr~~~~~~g~-~~Ef~QaGiEllG~ 128 (390)
T COG3705 95 PLRLSYAGKVFRAREGRHGR-RAEFLQAGIELLGD 128 (390)
T ss_pred CceeeecchhhhcchhccCc-ccchhhhhhHHhCC
Confidence 78999999999987332222 35999998887443
No 155
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=90.66 E-value=3 Score=36.07 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=56.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeec-------cCC--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R-------~~g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
..+|+||... ...|.+.|.|.++. +.+ .+.-+.|.|.|| +|.+.+..+. +.. +.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG--~I~~tlW~~~-----a~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETG--RVKLTLWGEQ-----AGS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCC--EEEEEEeCCc-----ccc--CC
Confidence 4678888542 25688899998542 122 356678899997 4898887753 224 89
Q ss_pred CCcEEEEE-eeEeecCCCCceEEEEEeE---EEEEec
Q 012612 82 TGASIWIQ-GNVVPSQGSKQKVELKVNK---IVLVGK 114 (460)
Q Consensus 82 ~g~~V~V~-G~v~~~~~~~~~~El~~~~---i~ils~ 114 (460)
+||+|.|. |.+..- . +.++|.+.+ +..+.+
T Consensus 67 ~GdvV~I~na~v~~f-~--G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 67 EGEVVEIENAWTTLY-R--GKVQLNVGKYGSISESDD 100 (129)
T ss_pred CCCEEEEECcEEeee-C--CEEEEEECCCEEEEECCc
Confidence 99999999 555543 2 368898874 555554
No 156
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=89.34 E-value=0.22 Score=50.04 Aligned_cols=38 Identities=34% Similarity=0.729 Sum_probs=31.3
Q ss_pred HHHHhcCCC-CCcceeccHHHHHHHHcCCCCccccccccC
Q 012612 415 LDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPR 453 (460)
Q Consensus 415 l~~~~~G~p-p~~G~giGidRL~m~l~~~~~Irdv~~FPr 453 (460)
+.+.+||.| |---.|+|+|||+|.|.|.++||.. .+|.
T Consensus 314 ~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 314 IALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred HHHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 445577876 8889999999999999999999964 5554
No 157
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.90 E-value=0.97 Score=46.50 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHHHHH------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQLNAE------ 210 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql~l~------ 210 (460)
.+...+-..+++..-+|+.++||+-+.||.+....- ++++ +...+. +- +...||.-..|.-+-
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~l--d~-~~~~~LiaTaE~plAa~~~~e 258 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVL--DG-GDEKYLIATAEQPLAAYHRDE 258 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEee--cC-CccceeEeeccchhhhhhccc
Confidence 457778889999999999999999999998876322 1111 111110 10 123456544444221
Q ss_pred HHhc-CC-CceEEEecccccCC-C--CCCC---CCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 211 TYAT-AL-SNVYTFGPTFRAEN-S--NTSR---HLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 211 l~~~-g~-~rvfeI~~~FR~E~-~--~~~r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
.+.. -+ -|+--.++|||.|- + .+.+ -.-+|+-+|.-. +.+-++.-++.|+|+..
T Consensus 259 ~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~ 320 (455)
T KOG2509|consen 259 WLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINN 320 (455)
T ss_pred ccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHH
Confidence 1111 11 24666899999994 2 1122 123899999643 34455555555555543
No 158
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=88.45 E-value=1.9 Score=49.85 Aligned_cols=74 Identities=14% Similarity=0.322 Sum_probs=54.8
Q ss_pred CCEEEEEEEEeeecc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 29 GLMIVVAGWVRTLRA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
++.+++.|+|.++|. .+.++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++... .+..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~---~~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPE--TYRQYKD-ELKEGKFYYLKGKIQER---DGRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEec---CCee
Confidence 456789999987653 134999999999975 99988764 3555442 39999999999999764 2357
Q ss_pred EEEEeEEE
Q 012612 103 ELKVNKIV 110 (460)
Q Consensus 103 El~~~~i~ 110 (460)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777664
No 159
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=88.36 E-value=3.6 Score=41.28 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=52.9
Q ss_pred CCEEEEEEEEeeecc----CCC-eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEE
Q 012612 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~----~g~-~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~E 103 (460)
|+.|..-.-|.++.. .|+ ..-+.|.|.||. |...+..... +.... +..|++|.|+|++..-+. .+.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~--I~ak~W~~~~--~~~~~--~~~g~vv~v~G~v~~y~g---~~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGD--IEAKLWDVSP--EDEAT--YVPETIVHVKGDIINYRG---RKQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcE--EEEEeCCCCh--hhHhh--cCCCCEEEEEEEEEEECC---cce
Confidence 344444444444432 243 666778999974 9998876532 12345 999999999999986543 477
Q ss_pred EEEeEEEEEecCC
Q 012612 104 LKVNKIVLVGKSD 116 (460)
Q Consensus 104 l~~~~i~ils~~~ 116 (460)
+.+..++.+.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888998887753
No 160
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=86.99 E-value=3.9 Score=33.88 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=48.1
Q ss_pred CEEEEEEEEeee---cc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe-eEeecCCC-
Q 012612 30 LMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQGS- 98 (460)
Q Consensus 30 ~~V~v~GwV~~~---R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G-~v~~~~~~- 98 (460)
..++|.|||.++ |. .|++.-++|.|..| +.|++.+..+... ... ..|..|+++.++| .|......
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~~--~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAVD--KFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHHH--Hhh-cccccccEEEEeccEEeeccccC
Confidence 458999999853 32 26788889999955 4799998875321 122 1399999999986 44443221
Q ss_pred ---CceEEEEEe
Q 012612 99 ---KQKVELKVN 107 (460)
Q Consensus 99 ---~~~~El~~~ 107 (460)
..++||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 235666554
No 161
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=85.70 E-value=7.7 Score=30.33 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE-eeEeecCCCCceEEEEEeEE
Q 012612 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 45 g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~~~~El~~~~i 109 (460)
+++.=+.|.|.+| .|.+++..... ... +.+|++|.++ |++..-. +.++|.+.+.
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCc
Confidence 5566678899996 48988876532 234 9999999999 7776543 3577777553
No 162
>PRK07211 replication factor A; Reviewed
Probab=85.22 E-value=5.7 Score=42.11 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=57.6
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeecc-----------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~-----------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l 80 (460)
.+|++|... ...|+|.|||.++-. .|++.=+.|-|.+| .|++++..+.... .... |
T Consensus 54 ~~I~dL~pg--------~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG--~Ir~TlW~d~ad~-~~~~--L 120 (485)
T PRK07211 54 NGIADIEPG--------MDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETG--SVRVAFWDEQAVA-AEEE--L 120 (485)
T ss_pred ccHhhCCCC--------CCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCC--eEEEEEechHhHh-hhcc--c
Confidence 357777542 356999999988732 26888899999996 4999998764211 1234 9
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
..|+++.|.|.++..- +.+||.+..+
T Consensus 121 e~GdV~~I~~~~~~~y---s~~El~i~~v 146 (485)
T PRK07211 121 EVGQVLRIKGRPKDGY---NGLEVSVDKV 146 (485)
T ss_pred CCCCEEEEeceEeccc---cceEEEEeeE
Confidence 9999999999875322 2478887753
No 163
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=84.95 E-value=9.8 Score=28.37 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=41.2
Q ss_pred EEEEEeeecc----CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 34 v~GwV~~~R~----~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
+.|.|.+.+. .+++.-+.+.|+++ .+.+++-... .|. .+. +..|+.+.|.|++..... .+++.-.+
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g--~i~~~~F~~~-~~~-~~~--~~~G~~~~v~Gkv~~~~~---~~qi~~P~ 71 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTG--TLTLVFFNFQ-PYL-KKQ--LPPGTRVRVSGKVKRFRG---GLQIVHPE 71 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCC--EEEEEEECCC-HHH-Hhc--CCCCCEEEEEEEEeecCC---eeEEeCCc
Confidence 4566655432 13466677899985 4888776421 121 245 999999999999987532 35554433
No 164
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=84.76 E-value=4.4 Score=42.25 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCEEEEEEEEeeeccC-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
-..|+|.|-|.+++.. .+..|+.|.|.. ..|+|++-+.....-.+ . +..|+-|.|.|++.-=+.. |.+.|.++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~--A~i~c~mf~~~~~~l~f-~--p~eG~~V~v~G~is~Y~~r-G~YQi~~~ 96 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDER--AQIRCVMFKGNNRRLKF-R--PEEGMQVLVRGKISLYEPR-GDYQIVAE 96 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCC--ceEEEEEEcCcccccCC-C--ccCCCEEEEEEEEEEEcCC-CceEEEEe
Confidence 4569999999999864 338899999997 45999887754211011 3 8889999999999764433 37888888
Q ss_pred EEE
Q 012612 108 KIV 110 (460)
Q Consensus 108 ~i~ 110 (460)
+++
T Consensus 97 ~~~ 99 (440)
T COG1570 97 SME 99 (440)
T ss_pred cCC
Confidence 776
No 165
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=84.55 E-value=5.2 Score=41.40 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=53.6
Q ss_pred CEEEEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchh-hHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 30 LMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD-QVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 30 ~~V~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~-~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
..++|.|.|...-. -|+..|+.+.|+.| .|-+++-....+|. .+++ |.+||.|.+.|.++.. . |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~-----~--~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEG--EIGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPG-----T--LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCc--eEEEEEecccccchHHHHh--cCCCCEEEEecCcccc-----c--eeE
Confidence 45788998877643 49999999999996 47887765443343 3677 9999999999999753 2 566
Q ss_pred eEEEEEec
Q 012612 107 NKIVLVGK 114 (460)
Q Consensus 107 ~~i~ils~ 114 (460)
++++++.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66665443
No 166
>PRK07217 replication factor A; Reviewed
Probab=84.28 E-value=17 Score=36.30 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=66.7
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeee--ccCCCeEE-EEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEE
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~--R~~g~~~F-v~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V 88 (460)
.+|+||.. .++.|+|.|+|.+. +.+..+.. -.|-|.|| +|..++..+.. ... |..|+++.+
T Consensus 73 ~kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG--~IkfT~W~~s~----~~~--leeGd~~rI 136 (311)
T PRK07217 73 VNIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETG--TIKFTKWAKSD----LPE--LEEGKSYLL 136 (311)
T ss_pred eeeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCc--eEEEEEccCCC----CCc--ccCCCEEEE
Confidence 46777754 46779999999988 33566666 45789986 48888776421 123 899999999
Q ss_pred EeeEeecCCCCceEEEEEeEEEEEecCCCCCCC
Q 012612 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (460)
Q Consensus 89 ~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~ 121 (460)
.+-.+..-.+ ..+|.+.+...+.+.+.+.++
T Consensus 137 ~na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 137 KNVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred EeEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 9888775444 689999888888777655554
No 167
>PRK14699 replication factor A; Provisional
Probab=84.10 E-value=6.2 Score=42.02 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCEEEEEEEEeeec--------c--CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCC
Q 012612 28 VGLMIVVAGWVRTLR--------A--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R--------~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (460)
.+..|+|.|+|.++- + .|++.=+.|.|.|| .|.+++..+... .+.. ++.|+.|.+.+.-++-..
T Consensus 285 ~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG--~Ir~T~W~~~a~--~~~~--i~~Gd~v~i~~~y~~~~~ 358 (484)
T PRK14699 285 DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTG--KIRLTLWDEKTN--FLDE--IDFDETVEVLNAYSRENT 358 (484)
T ss_pred CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCC--eEEEEEeCcccc--cccc--cCCCceEEEEeEEEEecc
Confidence 357799999999762 1 25666688999997 499999876432 1334 889999998755444333
Q ss_pred CCceEEEEEeEEEEEecCCC
Q 012612 98 SKQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 98 ~~~~~El~~~~i~ils~~~~ 117 (460)
..+.+||.+.+-.++.+|..
T Consensus 359 ~~~~~eL~~~~~t~I~~~~~ 378 (484)
T PRK14699 359 FSQQVELNLGARGIIQKSEK 378 (484)
T ss_pred CCccEEEEecCceeEeecCC
Confidence 34579999988888888763
No 168
>PRK15491 replication factor A; Provisional
Probab=83.84 E-value=8.2 Score=39.75 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=56.4
Q ss_pred CEEEEEEEEeeecc-------C---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe-eEeecCCC
Q 012612 30 LMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQGS 98 (460)
Q Consensus 30 ~~V~v~GwV~~~R~-------~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G-~v~~~~~~ 98 (460)
..|.|.|+|.++-. . +++.=+.|-|.+| .|.+++..+...+ +.. |..||+|.+.+ .++.+. -
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG--~Ir~t~W~~~a~~--~~~--l~~Gd~V~i~~~~~r~~~-~ 249 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETG--KIRVTLWDGKTDL--ADK--LENGDSVEIINGYARTNN-Y 249 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCC--eEEEEEecchhcc--ccc--CCCCCEEEEEeceEEEec-c
Confidence 45999999998843 2 3455588899986 4999888764321 234 89999999965 455432 2
Q ss_pred CceEEEEEeEEEEEecCCC
Q 012612 99 KQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 99 ~~~~El~~~~i~ils~~~~ 117 (460)
.+.+||.+..-..+.+|..
T Consensus 250 ~g~~El~~~~~s~I~~~~~ 268 (374)
T PRK15491 250 SQEVEIQIGNHGSLRKTDR 268 (374)
T ss_pred CCCEEEEeCCCceEEECCc
Confidence 3479999877666777753
No 169
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.49 E-value=8.9 Score=42.77 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCCCEEEEEEEEeeeccC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEE
Q 012612 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~E 103 (460)
..|+.|+|.|.|.+.+.. +++.-+.+.|++|. +++++=.-...|- .+. +.+|+.+.|.|++.... +.++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~--i~l~~F~~n~~~~-~~~--l~~G~~~~v~Gkv~~~~---~~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGN--LTLRFFNFNQPYL-KKQ--LKVGKRVAVYGKVKRGK---YGLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeE--EEEEEEccCcHHH-Hhh--CCCCCEEEEEEEEEecC---CeEE
Confidence 457889999999887432 35677888999864 8887763111221 244 99999999999998732 2355
Q ss_pred EEEeEEEE
Q 012612 104 LKVNKIVL 111 (460)
Q Consensus 104 l~~~~i~i 111 (460)
+.-.++.+
T Consensus 129 m~~P~~~~ 136 (681)
T PRK10917 129 MVHPEYEV 136 (681)
T ss_pred EEcCEEEe
Confidence 55455544
No 170
>PRK12366 replication factor A; Reviewed
Probab=83.43 E-value=8.5 Score=42.57 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=60.9
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeecc---------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~---------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (460)
.+|++|.+. ..|..++|.|||.++-. .|++-=+.|.|.+| .|++++..+..+ .+.. |..
T Consensus 280 ~pI~~L~~~------~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~d--~~~~--l~~ 347 (637)
T PRK12366 280 VNIEELTEF------EDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKAK--ILEN--LKE 347 (637)
T ss_pred eeHHHCCcc------cCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchhh--hhcc--cCC
Confidence 455555442 14568999999998832 27788889999986 599999876432 2234 788
Q ss_pred CcEEEEEeeEeec---CCCCceEEEEEeEEEEEec
Q 012612 83 GASIWIQGNVVPS---QGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 83 g~~V~V~G~v~~~---~~~~~~~El~~~~i~ils~ 114 (460)
|+++.+++-..+. ..+...+||.+..-..+.+
T Consensus 348 G~vy~is~~~vk~y~~~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 348 GDAVKIENCKVRTYYDNEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred CCEEEEecCEEeeccccCCCcCEEEEcCCceEEEe
Confidence 9999998655441 1233468888865544433
No 171
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=83.42 E-value=6.5 Score=41.31 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=59.0
Q ss_pred CCEEEEEEEEeeeccC-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
-..|+|.|=|.+.+.+ ++-+|+.|.|.. ..|-||+..... ..+. ..+..|+-|.|.|.+.--+.. |.+.|.|.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~--a~i~~~~~~~~~--~~~~-~~~~~G~~v~v~g~~~~y~~~-g~~ql~v~ 96 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEI--AQIRCVMFKGSA--RRLK-FKPEEGMKVLVRGKVSLYEPR-GDYQLIVE 96 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCC--cEEEEEEEcChh--hcCC-CCCCCCCEEEEEEEEEEECCC-CCEEEEEE
Confidence 4679999999999765 567899999997 459999887532 1121 128899999999999854322 36999999
Q ss_pred EEEEEe
Q 012612 108 KIVLVG 113 (460)
Q Consensus 108 ~i~ils 113 (460)
+|...+
T Consensus 97 ~i~~~g 102 (438)
T PRK00286 97 EIEPAG 102 (438)
T ss_pred EeeeCC
Confidence 987543
No 172
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=82.93 E-value=21 Score=28.12 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=46.4
Q ss_pred EEEEEEEeee--cc--CCC-eEEEEEEcCCCccceEEEEeCCccchhhHhccCCC-CCcEEEEEeeEeecCCCCceEEEE
Q 012612 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (460)
Q Consensus 32 V~v~GwV~~~--R~--~g~-~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~G~v~~~~~~~~~~El~ 105 (460)
|+|.|-|-.+ |. .|+ +.-+.+.|.+.. +-|..-.. ..-+.+.. |. .|+.|.|+|.+....= .+++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f-~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTF-SKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccC-CCceEEE
Confidence 6788888766 22 344 444788999854 55543332 11223445 88 9999999999976532 2367776
Q ss_pred EeEEE
Q 012612 106 VNKIV 110 (460)
Q Consensus 106 ~~~i~ 110 (460)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66554
No 173
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=82.65 E-value=6.9 Score=41.10 Aligned_cols=76 Identities=13% Similarity=0.274 Sum_probs=56.4
Q ss_pred CEEEEEEEEeeeccC-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 30 LMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 30 ~~V~v~GwV~~~R~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
..|+|.|=|.+.+.+ .+-+|+.|.|.. ..|.||+-+... ..++ ..+..|+-|.|.|.|.--+.. |.+.|.|.+
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~--a~i~~vmf~~~~--~~l~-f~~~~G~~V~v~g~v~~y~~~-G~~ql~v~~ 91 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDEN--AQVRCVMFRGNN--NRLK-FRPQNGQQVLVRGGISVYEPR-GDYQIICFE 91 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCC--cEEEEEEEcChh--hCCC-CCCCCCCEEEEEEEEEEECCC-CcEEEEEEE
Confidence 379999999999764 557888999987 469998877532 1111 127899999999999654332 369999998
Q ss_pred EEE
Q 012612 109 IVL 111 (460)
Q Consensus 109 i~i 111 (460)
+.-
T Consensus 92 i~~ 94 (432)
T TIGR00237 92 MQP 94 (432)
T ss_pred ecc
Confidence 875
No 174
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=81.40 E-value=2.7 Score=48.69 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeec-CCC-CCCCCceeeeccccCCc----cccccccHHHHHHHHhcC--
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITA-SDC-EGAGEQFCVTTLDFFEK----PAFLTVSGQLNAETYATA-- 215 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~-~~~-eg~~~~F~v~~~~~~~~----~~~L~~Spql~l~l~~~g-- 215 (460)
+-..-.+|..+...+-+-|.++|++|++||-+.. +++ -+.+++..+- +.-|. ++=|++--- +.++..
T Consensus 928 ~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~l--d~sG~~v~Lp~DLr~pfa---r~vs~N~~ 1002 (1351)
T KOG1035|consen 928 TEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELL--DHSGDVVELPYDLRLPFA---RYVSRNSV 1002 (1351)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeee--cCCCCEEEeeccccchHH---HHhhhchH
Confidence 3445567888888899999999999999996664 333 2333333221 22232 223332111 211111
Q ss_pred -CCceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHHHH
Q 012612 216 -LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYVV 267 (460)
Q Consensus 216 -~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~l~ 267 (460)
.-|-|+|++|||.+. .+ |..|++.+++-....+ -.|++.++-+++..++
T Consensus 1003 ~~~Kry~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l 1056 (1351)
T KOG1035|consen 1003 LSFKRYCISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEIL 1056 (1351)
T ss_pred HHHHHhhhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHh
Confidence 234599999999987 23 9999999998775442 3477777777777644
No 175
>PRK07218 replication factor A; Provisional
Probab=81.29 E-value=12 Score=39.18 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=56.1
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeecc--------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA--------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~--------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (460)
..+|+||.. .++.|.|.|+|.++-. .|.+.=+.|-|.|| ++.+++..+. . |..
T Consensus 58 ~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG--~Ir~tlW~~~-------~--l~~ 118 (423)
T PRK07218 58 SKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETG--TISYTAWKDF-------G--LSP 118 (423)
T ss_pred CccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCC--eEEEEEECCC-------C--CCC
Confidence 356777754 2477999999998831 24566667778875 3777777632 3 999
Q ss_pred CcEEEEEeeEeecCCCCceEEEEEeEEEEEec
Q 012612 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 83 g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~ 114 (460)
||+|.+.+-..+.-. +.++|.+.+-.-+.+
T Consensus 119 Gdvv~I~na~vre~~--g~~el~ig~~t~I~~ 148 (423)
T PRK07218 119 GDTVTIGNAGVREWD--GRPELNIGESTTVSL 148 (423)
T ss_pred CCEEEEeccEeeccC--CceEEeccCcceEEE
Confidence 999999976655433 358888755444443
No 176
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=80.56 E-value=13 Score=36.35 Aligned_cols=74 Identities=23% Similarity=0.357 Sum_probs=52.4
Q ss_pred CEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 30 ~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
..|.+.|||.++-.+..-+.++|-|++|. |=+........ -.+... |..|-.|.|.|.++.-.. ..+|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~G---k~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQG---KKSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCC---ceeEEEEe
Confidence 35789999999988866677899999974 55655543311 112335 999999999999987543 35666665
Q ss_pred EE
Q 012612 109 IV 110 (460)
Q Consensus 109 i~ 110 (460)
|.
T Consensus 142 I~ 143 (265)
T KOG3108|consen 142 IR 143 (265)
T ss_pred ee
Confidence 54
No 177
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=80.33 E-value=10 Score=29.29 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=33.5
Q ss_pred EEEEEEeeeccCCCeEEEEEE-cCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVN-DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lr-D~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
.|.|+|.++.++| +|+++- ++ +...+..+...+. .. +++|+.|.+.
T Consensus 7 ~v~g~V~si~d~G--~~v~~g~~g-----v~Gfl~~~~~~~~--~~--~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG--YILDIGIPG-----TTGFLPKKDAGNF--SK--LKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE--EEEEeCCCC-----cEEEEEHHHCCcc--cc--cCCCCEEEEE
Confidence 5999999999998 889983 22 5666765543322 34 8999998876
No 178
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=80.09 E-value=23 Score=30.24 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=35.3
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC----C-CC--ceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----G-SK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~----~-~~--~~~El~~~~i~ils~~ 115 (460)
+.|++-.... +.+.+ .|+.|+.|.|+|.+.... . ++ ...||.+++|.+|++.
T Consensus 46 ~~v~~wg~~A--e~~~~-~l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 46 FNLEIWGKTA--QVAAD-YVKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred EEEEEehHHH--HHHHH-HcCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 6666654321 12222 399999999999998652 1 21 3689999999999754
No 179
>PRK07080 hypothetical protein; Validated
Probab=79.90 E-value=2.3 Score=42.24 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=38.3
Q ss_pred ceEE-EecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHH
Q 012612 218 NVYT-FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 267 (460)
Q Consensus 218 rvfe-I~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~ 267 (460)
++|. .|.|||+|++.+.+-+-||+|-|+-.- .+-+++.+.-++.+....
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~i-Gt~e~v~~~r~~w~e~~~ 202 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRI-GTPEQIVAFRQSWIERGT 202 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEe-cCHHHHHHHHHHHHHHHH
Confidence 6666 599999999877777789999998874 477788877777666543
No 180
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=79.07 E-value=31 Score=30.98 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=53.6
Q ss_pred CCCCEEEEEEEEe--eeccC-C--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCce
Q 012612 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (460)
Q Consensus 27 ~~~~~V~v~GwV~--~~R~~-g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (460)
..++.++|.|.|. |+... + .+.| .|.|+. ..+.|....-.++ +.+.|.-|.|+|++... +
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~--g--- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAE--GSVTVSYEGILPD-------LFREGQGVVVQGTLEKG--N--- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCC--cEEEEEEeccCCc-------cccCCCeEEEEEEECCC--C---
Confidence 4689999999998 77654 2 3676 589987 4588876654332 37779999999999643 1
Q ss_pred EEEEEeEEEEEecCCCCCC
Q 012612 102 VELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 102 ~El~~~~i~ils~~~~~~p 120 (460)
.+.++ +||.||+..|.
T Consensus 120 -~F~A~--evLAKhdekYm 135 (159)
T PRK13150 120 -HVLAH--EVLAKHDENYT 135 (159)
T ss_pred -EEEEe--EEEeCCCCCCC
Confidence 23333 68999987643
No 181
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=77.93 E-value=1.7 Score=45.05 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=30.4
Q ss_pred eeecccCCcee-eecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHH
Q 012612 373 AMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 438 (460)
Q Consensus 373 ~fDl~~~G~~E-i~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~ 438 (460)
-|+.+.+|.|+ |++|+. |+.+.+++ |. -.|..||++|+|||+.+
T Consensus 275 vFe~~~~~~~~~i~~GGR----YD~L~~~f---g~---------------~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 275 VFEGYVDGVGNPIASGGR----YDDLLGRF---GR---------------ARPATGFSLDLDRLLEL 319 (391)
T ss_pred EEEEEECCCCCcccCCcc----hhhHHHHc---CC---------------CCCCceEEeeHHHHHhh
Confidence 47778887655 777773 45554443 21 23789999999999984
No 182
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=77.91 E-value=33 Score=30.46 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=57.1
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEe--eecc--CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEE
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~--~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~ 87 (460)
.+..|+... ....++.|+|.|+|. ++.. .+.+.| .|.|+. ..+.|......++ +.+.|.-|.
T Consensus 38 ~tpse~~~~----~~~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~--~~i~V~Y~G~lPd-------~F~eg~~VV 103 (148)
T PRK13254 38 YTPSEVAEG----EAPAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGN--ATVPVVYTGILPD-------LFREGQGVV 103 (148)
T ss_pred eCHHHHhcC----CccCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCC--eEEEEEECCCCCc-------cccCCCEEE
Confidence 345555543 125689999999995 3433 356787 489986 4688877654332 277799999
Q ss_pred EEeeEeecCCCCceEEEEEeEEEEEecCCCCC
Q 012612 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (460)
Q Consensus 88 V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~ 119 (460)
|+|++... + ...++ +||.||+..|
T Consensus 104 v~G~~~~~--g----~F~A~--~vLaKc~skY 127 (148)
T PRK13254 104 AEGRLQDG--G----VFVAD--EVLAKHDENY 127 (148)
T ss_pred EEEEECCC--C----eEEEE--EEEecCCCCC
Confidence 99998532 1 23444 6899997654
No 183
>PRK12366 replication factor A; Reviewed
Probab=75.96 E-value=14 Score=40.97 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=57.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee---c----c---CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R----~---~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l 80 (460)
-++|+||... ...|++.|||.++ | . -|++.=+.|-|.+| .|.+++..+...+ +.. |
T Consensus 63 ~~~I~dl~p~--------~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG--~Ir~t~W~~~~~~--~~~--l 128 (637)
T PRK12366 63 DFKISDIEEG--------QINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTG--TIRLTLWNDNAKL--LKG--L 128 (637)
T ss_pred eeEHHHCcCC--------CcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCC--EEEEEEEchhhhh--hcc--C
Confidence 4678888543 2459999999876 2 1 26678889999997 4999998765332 345 9
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
..|+++.+.|-..+.-. +.+||.+..
T Consensus 129 e~G~v~~i~~~~v~~~~--~~~el~~~~ 154 (637)
T PRK12366 129 KEGDVIKIENARSRKWN--NDVELNSGS 154 (637)
T ss_pred CCCCEEEEeccEecccC--CceEEEcCC
Confidence 99999999987555422 357776543
No 184
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=75.48 E-value=17 Score=39.50 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhhhCCceeecCceeecCC-C-CC---CC-CceeeeccccCC-ccccccccHHHHH-HHHhc---CC-
Q 012612 149 RVRNALAYATHKFFQENGFIWISSPIITASD-C-EG---AG-EQFCVTTLDFFE-KPAFLTVSGQLNA-ETYAT---AL- 216 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-eg---~~-~~F~v~~~~~~~-~~~~L~~Spql~l-~l~~~---g~- 216 (460)
.....+.+.+|++|...||.|+-|-.+++.. . +. .. +...+. |-.. .--+||+|-=--+ +.+.. +.
T Consensus 362 ~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~--NPis~e~s~lR~SLlp~LL~~~~~N~~~~~ 439 (551)
T TIGR00471 362 KPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVA--NPKTLEYTIVRTSLLPGLLETLSENKHHEL 439 (551)
T ss_pred ChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeC--CCCchhhhHhHhhhHHHHHHHHHhcccCCC
Confidence 3355677788999999999999999998751 1 10 00 111121 2222 2335666543332 33222 22
Q ss_pred -CceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHHH
Q 012612 217 -SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 266 (460)
Q Consensus 217 -~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~l 266 (460)
-|+||||+||...+. +..+-.++.++-+-.+. .|+.++...+|.++..+
T Consensus 440 ~~~lFEiG~Vf~~~~~-~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 440 PQKIFEIGDVVVKDDK-SETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred CeeEEEEEEEEEcCCc-cccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 269999999965321 11233445677666553 37888888888888643
No 185
>PRK06386 replication factor A; Reviewed
Probab=74.62 E-value=45 Score=34.09 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=57.5
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeecc-------C-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~-------~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
.+|+||.. ....|+|.|+|..+-. . +.+.=..|-|.|| +|.+++..+ . |..|
T Consensus 108 ~KI~DL~~--------g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTG--rIr~TlW~~--------~--l~eG 167 (358)
T PRK06386 108 VKIRDLSL--------VTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTA--RVRISSFGK--------P--LEDN 167 (358)
T ss_pred cEeEeccC--------CCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCC--eEEEEEccc--------c--ccCC
Confidence 46667643 2355788888866511 1 3344455667764 366665542 4 8899
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCC
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p 120 (460)
|+|.+.+-.+..-. +.++|.+.....+.+.+.+.+
T Consensus 168 d~v~i~na~v~e~~--G~~el~v~~~t~I~~~~~~ie 202 (358)
T PRK06386 168 RFVRIENARVSQYN--GYIEISVGNKSVIKEVESDIN 202 (358)
T ss_pred CEEEEeeeEEEccC--CeEEEEeCCeEEEEECCCCcc
Confidence 99999997766543 479999998888877654333
No 186
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.51 E-value=26 Score=38.53 Aligned_cols=95 Identities=13% Similarity=0.242 Sum_probs=64.4
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeee---cc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l 80 (460)
+-+.|++|... ....+|.|||.++ |. .|++.-++|.|.+| .|++.+..+..+ .+. ..|
T Consensus 179 ~~~pI~~L~py--------~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg--~Irat~f~~~~d--kf~-~~l 245 (608)
T TIGR00617 179 RVMPIASLSPY--------QNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESG--EIRATAFNEQAD--KFY-DII 245 (608)
T ss_pred ceEEHHHCCCC--------CCceEEEEEEEeccccceecCCCCCceeeEEEEecCCC--eEEEEECchHHH--HHh-hhc
Confidence 35678888663 2348999999764 32 26778888999654 699988776321 121 138
Q ss_pred CCCcEEEEE-eeEeecCC----CCceEEEEEeEEEEEecCCC
Q 012612 81 TTGASIWIQ-GNVVPSQG----SKQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 81 ~~g~~V~V~-G~v~~~~~----~~~~~El~~~~i~ils~~~~ 117 (460)
..|+++.++ |.|+.... ....+||...+-+.+.+|..
T Consensus 246 ~eG~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~d 287 (608)
T TIGR00617 246 QEGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECED 287 (608)
T ss_pred ccCCEEEECceEEEEccccccCCCCCEEEEECCCeEEEECCC
Confidence 999999996 56665432 12469999888888887753
No 187
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=74.25 E-value=56 Score=29.39 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=53.1
Q ss_pred CCCCEEEEEEEEe--eeccC-C--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCce
Q 012612 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (460)
Q Consensus 27 ~~~~~V~v~GwV~--~~R~~-g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (460)
..++.++|.|.|. |+... + .+.| .|.|+. ..+.|....-.++ +.+.|.-|.|+|.+... +
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~--~~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~--g--- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAG--GSVTVTYEGILPD-------LFREGQGIVAQGVLEEG--N--- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCC--eEEEEEEcccCCc-------cccCCCeEEEEEEECCC--C---
Confidence 4689999999998 77654 3 3576 588986 4588876644332 37779999999999642 1
Q ss_pred EEEEEeEEEEEecCCCCCC
Q 012612 102 VELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 102 ~El~~~~i~ils~~~~~~p 120 (460)
.+.++ +||.||+..|.
T Consensus 120 -~F~A~--~vLAKhdekYm 135 (160)
T PRK13165 120 -HIEAK--EVLAKHDENYT 135 (160)
T ss_pred -eEEEE--EEEecCCCCCC
Confidence 22333 68999987643
No 188
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=73.97 E-value=2 Score=44.59 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=32.3
Q ss_pred eeecccCCcee-eecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 373 AMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 373 ~fDl~~~G~~E-i~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
-|+.+.+|.+. |++|+. |+.+.+++ | +-.|..|||+|+|||+.++-+
T Consensus 282 vFe~~~~~~~~~i~~GGR----YD~L~~~f---g---------------~~~pAvGfai~lerL~~~l~~ 329 (392)
T PRK12421 282 VFAAYIPGRGQALARGGR----YDGIGEAF---G---------------RARPATGFSMDLKELLALQFL 329 (392)
T ss_pred EEEEEECCCCCcccCCCC----ccchhHhh---C---------------CCCCCceEEeeHHHHHhhccc
Confidence 47888887654 788874 44444333 1 124889999999999987644
No 189
>PRK07218 replication factor A; Provisional
Probab=73.55 E-value=38 Score=35.48 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=52.5
Q ss_pred CCEEEEEEEEeee--c-----cC-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCc
Q 012612 29 GLMIVVAGWVRTL--R-----AQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (460)
Q Consensus 29 ~~~V~v~GwV~~~--R-----~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (460)
...|+|.|+|.++ | +. +.+.=..|-|.|| +|.+++..+. .. |..||+|.|.+-..+.-. +
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG--~Ir~tlW~~~------~~--l~~Gd~v~I~na~v~e~~--G 239 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETG--RLPFTDWDPL------PE--IEIGASIRIEDAYVREFR--G 239 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCc--eEEEEEeccc------cc--CCCCCEEEEeeeEEeccC--C
Confidence 4458999999877 1 11 2233345778885 4888777642 24 899999999997776543 4
Q ss_pred eEEEEEeEEEEEecCCC
Q 012612 101 KVELKVNKIVLVGKSDP 117 (460)
Q Consensus 101 ~~El~~~~i~ils~~~~ 117 (460)
.+||.+.+-.-+...+.
T Consensus 240 ~~elnv~~~t~I~~~d~ 256 (423)
T PRK07218 240 VPSVNVSEFTTVEALDR 256 (423)
T ss_pred eEEEEECCceEEEECCC
Confidence 79999986655555443
No 190
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=72.81 E-value=15 Score=29.44 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=40.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNV 92 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v 92 (460)
.+.|.|.+++..+.=+|+.|+|.+|. +++.+.++... ... ..|.+|+++-.+-.-
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG~--i~~tiH~~v~~--~y~-~~l~~GavLlLk~V~ 60 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTGE--IRGTIHRKVLE--EYG-DELSPGAVLLLKDVT 60 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCCc--EEEEEeHHHHh--hcC-CccccCEEEEEeeee
Confidence 58899999998766789999999974 99999865321 111 138888888776443
No 191
>PRK00036 primosomal replication protein N; Reviewed
Probab=72.32 E-value=13 Score=31.04 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=37.8
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~ 115 (460)
||+++..+. -+.+.. ++.|+.|.|+|.+..+..+...+=++++.|+.+.+.
T Consensus 49 i~ava~G~~--a~~~~~--l~~Gs~v~v~GFLa~~~~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 49 ISAVALGDL--ALLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEhhH--HHHhcc--cCCCCEEEEEEEEEECCCCCCcEEEEhHHeEEcccc
Confidence 566655421 233556 999999999999998655656799999999988554
No 192
>PRK07211 replication factor A; Reviewed
Probab=71.80 E-value=24 Score=37.50 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=56.3
Q ss_pred CCEEEEEEEEeee---c----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE-eeEeecCC
Q 012612 29 GLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQG 97 (460)
Q Consensus 29 ~~~V~v~GwV~~~---R----~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~ 97 (460)
...|.|.|+|.++ | .. |++.=+.|-|.+| .|.+++..+... .+.. |..|++|.|. |.+...
T Consensus 171 ~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG--~IR~TlW~d~Ad--~~~~--le~G~Vv~I~~a~Vre~-- 242 (485)
T PRK07211 171 LSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETG--RVRVTLWDDRAD--LAEE--LDAGESVEIVDGYVRER-- 242 (485)
T ss_pred CCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCC--eEEEEEechhhh--hhcc--CCCCCEEEEEeeEEEec--
Confidence 4568999999865 2 22 4666688999997 499998876422 1234 8999999997 566543
Q ss_pred CCceEEEEEeEEEEEecCC
Q 012612 98 SKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 98 ~~~~~El~~~~i~ils~~~ 116 (460)
.+.+||.+..-..+.++.
T Consensus 243 -~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 243 -DGSLELHVGDRGAVEEVD 260 (485)
T ss_pred -CCcEEEEECCCceEEECC
Confidence 246999888777777764
No 193
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=71.67 E-value=27 Score=38.59 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCCCEEEEEEEEeeecc----CCCeEEEEEEc-CCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCce
Q 012612 27 RVGLMIVVAGWVRTLRA----QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~----~g~~~Fv~lrD-~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (460)
..|+.++|.|.|.+... ..++.-+.+.| +++ .+++++=.. .|- .+. +.+|+.+.|.|++..... .
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~F~~--~~~-~~~--~~~g~~~~~~Gk~~~~~~---~ 99 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYK--KLELRFFNR--AFL-KKK--FKVGSKVVVYGKVKSSKF---K 99 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCC--EEEEEEECC--HHH-Hhh--CCCCCEEEEEEEEEeeCC---E
Confidence 45788999999876421 13456677899 875 488877642 221 244 999999999999986432 3
Q ss_pred EEEEEeEE
Q 012612 102 VELKVNKI 109 (460)
Q Consensus 102 ~El~~~~i 109 (460)
+++.-.++
T Consensus 100 ~~~~~p~~ 107 (630)
T TIGR00643 100 AYLIHPEF 107 (630)
T ss_pred EEEECCEE
Confidence 44444443
No 194
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=71.16 E-value=12 Score=43.21 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=48.8
Q ss_pred CCEEEEEEEEeeeccC----CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC
Q 012612 29 GLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~~----g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (460)
++.|+|.|.|.++|.. ..++|+.+.|.+|. +.+++-++ .|+..+. +..++++.|+|+...+.
T Consensus 897 ~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~--~e~~~F~~--~~~~~~~--l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 897 NTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVE--ITIFVNDN--DYLLFET--LKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCc--EEEEEcHH--HHHHHHH--hhcCCEEEEEEEEcCCC
Confidence 5678999999987652 35999999999964 99988764 3666666 88899999999887653
No 195
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=69.90 E-value=24 Score=38.75 Aligned_cols=112 Identities=6% Similarity=-0.043 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC--C-----CC-CCceeeeccccCC-ccccccccHHHHH-HHHhcCC----
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC--E-----GA-GEQFCVTTLDFFE-KPAFLTVSGQLNA-ETYATAL---- 216 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e-----g~-~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~~~g~---- 216 (460)
..++...+|+.|...||.|+-|-.|++..- + .. .+...+. |-.. .-..||+|-=--+ +.+....
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~--NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~ 476 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIG--NPRSADFEVVRTSLLPGLLKTLGHNKDAPK 476 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEEC--CCcchhHHHHHHhhHHHHHHHHHHhhcCCC
Confidence 466777889999999999999999987521 1 00 0112221 2221 2235666543332 4333332
Q ss_pred -CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHH
Q 012612 217 -SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 265 (460)
Q Consensus 217 -~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~ 265 (460)
-|+||||+||-.... ..+...|-.+|=+-.+.. ++.++..+++.++..
T Consensus 477 p~klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~ 527 (597)
T PLN02265 477 PIKLFEVSDVVLLDES-KDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEV 527 (597)
T ss_pred CeeEEEeEeEEecCCc-ccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHH
Confidence 379999999954321 111112444555444443 688888877777754
No 196
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=68.75 E-value=27 Score=39.99 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=51.2
Q ss_pred HHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccH-HHHHHHHhc----CCCceEEEeccccc
Q 012612 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG-QLNAETYAT----ALSNVYTFGPTFRA 228 (460)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Sp-ql~l~l~~~----g~~rvfeI~~~FR~ 228 (460)
|-+.+-+||.++|-.-|.+--|.+... -+++++.|. ..+|....+ ...|+=...+|.|.
T Consensus 2 iR~~fl~fF~~~gH~~v~s~slvp~~d----------------ptllf~nAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~ 65 (851)
T TIGR00344 2 IRQTFLDFFKEKGHQVIPSASLVPRND----------------PTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRL 65 (851)
T ss_pred HHHHHHHHHHhCCCEEcCCCCcCCCCC----------------CCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc
Confidence 445667899999988876555544210 111111222 222332221 24788889999997
Q ss_pred CCC----CCCCCCCccceeeeeecCCCH--HHHHHHHHHH
Q 012612 229 ENS----NTSRHLAEFWMIEPELAFADL--KDDMACATAY 262 (460)
Q Consensus 229 E~~----~~~rHl~EFt~lE~e~~~~~~--~~~~~~~e~l 262 (460)
-+. .|.||..=|.||=- .+|.|| ++.+..+=++
T Consensus 66 nDld~VG~t~rHhTfFEMlGn-fSFgdYfK~eai~~awe~ 104 (851)
T TIGR00344 66 NDIENVGRTARHHTFFEMLGN-FSFGDYFKEEAIAFAWEL 104 (851)
T ss_pred cchhhhcCCCcchhhHHhhcc-cchhhhhHHHHHHHHHHH
Confidence 544 37899877777642 345564 3444444333
No 197
>COG3689 Predicted membrane protein [Function unknown]
Probab=68.45 E-value=24 Score=34.16 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc----chhhHhccCCCCCcEEEEEeeEeecCC--
Q 012612 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASIWIQGNVVPSQG-- 97 (460)
Q Consensus 24 ~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V~V~G~v~~~~~-- 97 (460)
..+..|++|.+.|.|-+=-..++--++..| -|+ +=|++++..- ..+...+ ++..+.|.|+|++....-
T Consensus 170 pdef~Gk~Ie~tGFVy~~~~~~~N~lflaR--Fgi--icC~ADa~vygl~v~~~~~~~--y~ndtWltvkGtl~~e~~~~ 243 (271)
T COG3689 170 PDEFAGKKIEFTGFVYNDESFPKNYLFLAR--FGI--ICCAADAGVYGLLVELDNQTD--YKNDTWLTVKGTLSSEYLSD 243 (271)
T ss_pred chhhcCceEEEEEEEECCCCCCcceeehhh--hhe--eeeeccceeEEEEEEcccccc--CCCCceEEEEeEEEeeecCc
Confidence 447899999999999764443333333344 333 5566665431 1222234 889999999999986432
Q ss_pred -CCceEEEEEeEEEEEecCCC
Q 012612 98 -SKQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 98 -~~~~~El~~~~i~ils~~~~ 117 (460)
++.-..|+|++++.+.+...
T Consensus 244 ~~~~ipvi~v~sv~~I~kP~n 264 (271)
T COG3689 244 FKKRIPVIEVDSVEVIPKPAN 264 (271)
T ss_pred hhhcCcEEEeeeeeecCCCCC
Confidence 12346778899988877653
No 198
>PRK08402 replication factor A; Reviewed
Probab=68.22 E-value=32 Score=35.21 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=55.5
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeee---cc----C---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA----Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R~----~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+|+||... .+.|++.|+|.++ |. . |++.=+.|-|.|| ++.+++..+... +.+.. |.
T Consensus 63 ~kI~dl~~g--------~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG--~ir~TlW~~~a~-~~~~~--l~ 129 (355)
T PRK08402 63 MHISDLVPG--------MRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTG--RARVVLWDAKVA-KYYNK--IN 129 (355)
T ss_pred cCHHHccCC--------CceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCC--eEEEEEechhhh-hhccc--CC
Confidence 567777542 3679999999987 31 2 2344478999996 488888875421 01234 89
Q ss_pred CCcEEEEEe-eEeecCCCCceEEEEEeEEEEE
Q 012612 82 TGASIWIQG-NVVPSQGSKQKVELKVNKIVLV 112 (460)
Q Consensus 82 ~g~~V~V~G-~v~~~~~~~~~~El~~~~i~il 112 (460)
.||+|.|.| .|...-.+ ..||.+..-.-+
T Consensus 130 ~Gdvi~I~~a~V~e~~~G--~~eLsvg~~s~i 159 (355)
T PRK08402 130 VGDVIKVIDAQVRESLSG--LPELHINFRARI 159 (355)
T ss_pred CCCEEEEECCEEeecCCC--cEEEEECCCceE
Confidence 999999985 55443233 468887654433
No 199
>PRK02801 primosomal replication protein N; Provisional
Probab=66.18 E-value=22 Score=29.25 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=32.7
Q ss_pred eEEEEeCCccchhhHh-ccCCCCCcEEEEEeeEee--cCCCCceEEEEEeEEEEE
Q 012612 61 MQCVMTSDAEGYDQVK-SGLITTGASIWIQGNVVP--SQGSKQKVELKVNKIVLV 112 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~-~~~l~~g~~V~V~G~v~~--~~~~~~~~El~~~~i~il 112 (460)
|+|++..+.. +.+. . +..|+-|.|+|.+.. ++.++..+.|+++.++.+
T Consensus 50 i~~va~G~~A--e~~~~~--l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQF--QAITQS--ITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHH--HHHHhh--cCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 7777765421 2233 4 999999999999986 333433466888888765
No 200
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=66.05 E-value=6.3 Score=40.71 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=33.5
Q ss_pred eeeecccCCc---eeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 372 AAMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 372 ~~fDl~~~G~---~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
--|+.+.++. +-|++|+ +|+.+..++. -...|..||++|+|||+.++...
T Consensus 261 ~vFe~~~~~~~~~~~i~~GG----RYD~L~~~f~-----------------~~~~~avGfs~~~~~l~~~l~~~ 313 (397)
T TIGR00442 261 TVFEFVTDELGAQGTICGGG----RYDGLVEELG-----------------GPPTPAVGFAIGIERLLLLLEEL 313 (397)
T ss_pred eEEEEEECCCCccceeeecc----chHHHHHHhC-----------------CCCCceEEeeecHHHHHHHHHhc
Confidence 3477776643 3588887 5555544431 11257889999999999998753
No 201
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=65.63 E-value=7.1 Score=40.96 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=15.7
Q ss_pred CCcceeccHHHHHHHHcC
Q 012612 424 PHAGFGLGFERLVQFATG 441 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~ 441 (460)
|..||++|+|||++++..
T Consensus 300 PavGfa~g~erl~~~l~~ 317 (430)
T CHL00201 300 PAVGCAIGLERLLLIAKD 317 (430)
T ss_pred CeeEEEecHHHHHHHHhc
Confidence 778999999999998754
No 202
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.50 E-value=34 Score=38.94 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.6
Q ss_pred CCcceeccHHHHHHHHcCCCCcccccccc
Q 012612 424 PHAGFGLGFERLVQFATGVENIRDAIPFP 452 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~~~~Irdv~~FP 452 (460)
|+-==|+|+||++..+-|.+|.=|+.+|.
T Consensus 223 k~IDTGmGLERi~~vlQ~~~tnyd~dlf~ 251 (879)
T COG0013 223 KNIDTGMGLERIAAVLQGVPTNYDTDLFR 251 (879)
T ss_pred CCcccCccHHHHHHHHcCCCcchhhhhhH
Confidence 34445899999999999999999988875
No 203
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=63.22 E-value=61 Score=25.27 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=38.2
Q ss_pred EEEEEEeeeccCC-CeEEEEEEcCCCcc---ce-EEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 33 VVAGWVRTLRAQS-SVTFIEVNDGSCLS---NM-QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 33 ~v~GwV~~~R~~g-~~~Fv~lrD~~~~~---~i-Qvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
+|.|.|....... .-.|. |+|..+-. +- -+++.... ... +.+||.|.|+|++..-.. ..+|...
T Consensus 1 ~v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~-----~~~--~~~Gd~V~vtG~v~ey~g---~tql~~~ 69 (78)
T cd04486 1 TVEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS-----GAD--VAVGDLVRVTGTVTEYYG---LTQLTAV 69 (78)
T ss_pred CeEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC-----CCC--CCCCCEEEEEEEEEeeCC---eEEEccC
Confidence 3678888887642 23454 67652100 00 12222110 124 999999999999987543 3555443
Q ss_pred E-EEEEe
Q 012612 108 K-IVLVG 113 (460)
Q Consensus 108 ~-i~ils 113 (460)
. +++++
T Consensus 70 ~~~~~~~ 76 (78)
T cd04486 70 SAIEVLG 76 (78)
T ss_pred CceEEec
Confidence 3 44443
No 204
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=62.48 E-value=21 Score=34.00 Aligned_cols=97 Identities=20% Similarity=0.246 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCcccccccc-HHHHHHHHh----cCCCceEEEeccc
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVS-GQLNAETYA----TALSNVYTFGPTF 226 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~S-pql~l~l~~----~g~~rvfeI~~~F 226 (460)
++|.+..-+||.++|...|.+--|.+... ..=.| +.| .+.+|.... ....|+-...+|.
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~dD--ptllF--------------tnAGM~~Fkp~f~G~~~p~~~r~~~~QkCi 65 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRDD--PTLLF--------------TNAGMNQFKPIFLGEVPPPANRLVNSQKCI 65 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCCC--Cchhe--------------eccchhhhhHHhcCCCCCCCCceeeeeece
Confidence 46777888999999999987666653210 00112 112 222233221 1246888999999
Q ss_pred ccCCC----CCCCCCCccceeeeeecCCCH--HHHHHHHHHHHHH
Q 012612 227 RAENS----NTSRHLAEFWMIEPELAFADL--KDDMACATAYLQY 265 (460)
Q Consensus 227 R~E~~----~~~rHl~EFt~lE~e~~~~~~--~~~~~~~e~li~~ 265 (460)
|.-+. .|.||..=|.|| --.+|.|| ++.++.+=+++..
T Consensus 66 R~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT~ 109 (232)
T cd00673 66 RAGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLTE 109 (232)
T ss_pred ecCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHHh
Confidence 96322 378998888888 33456675 4555555555443
No 205
>PLN02734 glycyl-tRNA synthetase
Probab=60.79 E-value=3.2 Score=45.77 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=34.9
Q ss_pred Cccccccc--cHHH---HHHHHhcCCC----ceEEEecccccCCCCCCCC----CCccceeeeeecCCCH
Q 012612 196 EKPAFLTV--SGQL---NAETYATALS----NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADL 252 (460)
Q Consensus 196 ~~~~~L~~--Spql---~l~l~~~g~~----rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~ 252 (460)
+.+.|||. +--. +++++-..=. .+-|||++||||=+ .|+ .-||||.|+|. |.+-
T Consensus 246 ~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIs--PR~gl~R~REF~qaEiE~-Fv~P 312 (684)
T PLN02734 246 LSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEIS--PRQGLLRVREFTLAEIEH-FVDP 312 (684)
T ss_pred CccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccC--cccceeeechhhhhhhhe-ecCc
Confidence 46789983 2222 2454432222 37899999999943 333 57999999997 6553
No 206
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=60.50 E-value=55 Score=28.34 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=38.7
Q ss_pred CCEEEEEEEEeeeccC-CCe-EEEE-E----EcCC---CccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCC
Q 012612 29 GLMIVVAGWVRTLRAQ-SSV-TFIE-V----NDGS---CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~~-g~~-~Fv~-l----rD~~---~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (460)
++.+++.|.|.+.... ++- -|.. + ..+. ...++++.++++... . +.+||.|.++|++...+.
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~--l~~Gd~i~~~g~l~~~~~ 146 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQP-----R--LQPGDRIRVRGKLKPPSG 146 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEecccccc-----c--cCCCCEEEEEEEEecCCC
Confidence 7889999999888654 322 2332 1 1111 113566666554321 4 899999999999987543
No 207
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=59.73 E-value=1.3e+02 Score=26.92 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=56.4
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEe--eeccC-C--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEE
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~--~~R~~-g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V 86 (460)
.+..|+... ....++.+++.|.|. |+... + .+.| .+.|+. ..+.|..+.-.++ +.+.|.-|
T Consensus 38 ~tpsEv~~~----~~~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-------lFrEGqgV 103 (155)
T PRK13159 38 FTPSQVRAG----AAAGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKN--AATQVEYTGILPD-------LFRDNQSV 103 (155)
T ss_pred ECHHHHhcC----CcccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCC--cEEEEEEccCCCc-------cccCCCeE
Confidence 344555443 124568899999998 77654 3 3677 578986 4587776643332 37779999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCCCCCC
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p 120 (460)
.++|++. . + ..+++ +||.||+..|.
T Consensus 104 VaeG~~~--~-g----~F~A~--~vLAKHde~Ym 128 (155)
T PRK13159 104 IANGRMQ--G-G----RFVAN--EVLAKHDETYM 128 (155)
T ss_pred EEEEEEc--C-C----EEEEe--EEEecCCCcCC
Confidence 9999985 1 2 22333 68999987643
No 208
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.56 E-value=18 Score=37.88 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CC-----CCceeeecc-ccCC-cc-------ccccccHHHHHH
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTL-DFFE-KP-------AFLTVSGQLNAE 210 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~-----~~~F~v~~~-~~~~-~~-------~~L~~Spql~l~ 210 (460)
-++..+++..||.=...+||.||-||.+-...- | |. .+.|.+..- +-|+ +| +-.+.-+-=|++
T Consensus 192 ~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~re 271 (560)
T KOG1637|consen 192 TRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYRE 271 (560)
T ss_pred chHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHhh
Confidence 477889999999999999999999999876432 1 11 134444210 0010 00 000000111111
Q ss_pred HHhcCCCceEEEecccccCCC---CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 211 TYATALSNVYTFGPTFRAENS---NTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 211 l~~~g~~rvfeI~~~FR~E~~---~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
|= -|.=..|..=|||-| .+-+|+-+|.|=|.-. |.+.+++-+.++..+..
T Consensus 272 LP----lR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~f 324 (560)
T KOG1637|consen 272 LP----LRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKGCLDF 324 (560)
T ss_pred CC----ccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHHHHHH
Confidence 10 123346777899965 3457889999988766 55555555555544443
No 209
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=57.32 E-value=83 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.493 Sum_probs=26.2
Q ss_pred CCCCcEEEEEeeEeecC----CCC--ceEEEEEeEE----EEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKI----VLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~~--~~~El~~~~i----~ils~~ 115 (460)
|+.||.|.|+|.+..+. .++ ...||.+.++ .+|+..
T Consensus 72 l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 72 VTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred CCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 99999999999998652 121 2578888775 666644
No 210
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=53.83 E-value=1.4e+02 Score=33.14 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=51.5
Q ss_pred CCCCEEEEEEEEeeeccC----CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 27 RVGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~----g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
..|..|++.|.|.+.-.. ++..=+.+.|+++ .+-+++=.... | ..+. ++.|..|.|.|++...+. ..
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~--~l~l~fFn~~~-~-l~~~--~~~G~~v~v~Gk~~~~~~---~~ 128 (677)
T COG1200 58 RPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTG--VLTLVFFNFPA-Y-LKKK--LKVGERVIVYGKVKRFKG---GL 128 (677)
T ss_pred CCCceEEEEEEEEeeeccCCCCCceEEEEEecCcE--EEEEEEECccH-H-HHhh--CCCCCEEEEEEEEeeccC---ce
Confidence 567899999999665322 3344466788775 46666544321 1 1234 999999999999998543 46
Q ss_pred EEEEeEEEEEe
Q 012612 103 ELKVNKIVLVG 113 (460)
Q Consensus 103 El~~~~i~ils 113 (460)
++.--++.+.+
T Consensus 129 ~~~hpe~~~~~ 139 (677)
T COG1200 129 QITHPEYIVND 139 (677)
T ss_pred EEEcceEEecC
Confidence 66666666554
No 211
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=53.60 E-value=63 Score=23.51 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=37.5
Q ss_pred EEEEEEeeeccCCCeEEEEEEcC-CCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDG-SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~-~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|..++..|..+.++|... ++ +.|.+-++.+. ..+ . +..||.|.+.
T Consensus 6 ~l~a~V~~v~~~G~~vRlEl~~~~~~-~~iEvel~~~~---~~l-~--l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVGPEVRLELKRLDDG-EPIEVELPRER---RQL-G--LQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecCCeEEEEEEECCCC-CEEEEEeCHhH---Hhc-C--CCCCCEEEEE
Confidence 47889999999999999999654 44 47888877653 112 3 7779999875
No 212
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=52.77 E-value=92 Score=23.01 Aligned_cols=48 Identities=6% Similarity=0.239 Sum_probs=32.8
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc--h--hhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y--DQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~--~~~~~~~l~~g~~V~V~ 89 (460)
.+.|+|.++...| +|+.|-++ ++..+..+... + +.-.. ++.|+.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~V~l~~~-----~~gli~~s~l~~~~~~~~~~~--~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG--CIVSFYNN-----VKGFLPKSELSEAFIKDPEEH--FRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc--EEEEECCC-----CEEEEEHHHcChhhcCCHHHc--ccCCCEEEEE
Confidence 4789999998766 89999643 57777754321 1 11223 8889998886
No 213
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=51.49 E-value=30 Score=27.93 Aligned_cols=33 Identities=15% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEE
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLV 112 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~il 112 (460)
++.||.|.|+|.+.... .+ ...++|.|++|.+|
T Consensus 66 l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 66 LKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp --TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 99999999999997642 12 23688899988875
No 214
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=51.07 E-value=36 Score=28.44 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCCcEEEEEeeEeecCC----CC--ceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~~----~~--~~~El~~~~i~ils~~ 115 (460)
|..||.|.|+|.+..+.= +. ...||.++++.+|++.
T Consensus 65 l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 65 CTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 999999999999987531 21 2588999999998764
No 215
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=51.04 E-value=40 Score=26.84 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=32.6
Q ss_pred ceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCC----C--CceEEEEEeEEEE
Q 012612 60 NMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVL 111 (460)
Q Consensus 60 ~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~----~--~~~~El~~~~i~i 111 (460)
.++|.+..+... ..++. ++.||.|.|+|.+....- + ...+++.+++|.+
T Consensus 45 ~~~v~~~g~~a~-~~~~~--~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~ 99 (100)
T cd04496 45 WIRVVAFGKLAE-NAAKY--LKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEF 99 (100)
T ss_pred EEEEEEEhHHHH-HHHHH--hCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEE
Confidence 477776654211 12455 999999999999987531 1 2357888877765
No 216
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=50.83 E-value=36 Score=26.11 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=31.5
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc------hhhH-hccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG------YDQV-KSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~------~~~~-~~~~l~~g~~V~V~ 89 (460)
.|.|.|.++...| +|++|..+ +...+...... ...+ +. ++.|+.|.+.
T Consensus 6 ~V~g~V~~i~~~G--~fV~l~~~-----v~G~v~~~~ls~~~~~~~~~~~~~--~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG--VFFRLSSS-----IVGRVLFQNVTKYFVSDPSLYNKY--LPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc--EEEEeCCC-----CEEEEEHHHccCccccChhhHhcc--cCCCCEEEEE
Confidence 5889999998777 89999643 45666533211 1112 33 8899988765
No 217
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=49.48 E-value=38 Score=30.57 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=35.2
Q ss_pred eEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~ 115 (460)
+.|++..+.. +. .+. |+.|+.|.|+|.+..+. .+ ....||.|++|.+|.+.
T Consensus 49 i~vv~wgk~A--e~~~~~--l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQA--ENLANW--AKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHH--HHHHHH--cCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 5666655431 12 234 99999999999998642 12 13589999999988765
No 218
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=49.18 E-value=1.1e+02 Score=22.96 Aligned_cols=51 Identities=8% Similarity=0.206 Sum_probs=33.5
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc---hhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...| +|++|.+..+ +...+..+... +..... .++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g--~~v~l~~~~~---~~gll~~s~l~~~~~~~~~~-~~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG--AYVSLLEYGN---IEGMILLSELSRRRIRSIRK-LVKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE--EEEEEcCCCC---eEEEEEhHHcCCcccCCHHH-eeCCCCEEEEE
Confidence 5789999998766 8999987532 46666644321 111221 27899998886
No 219
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=48.88 E-value=13 Score=35.99 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=38.1
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 447 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ird 447 (460)
.+.-.+|+.++|+ ||.-= . -|.. .|++- -|..+=+--|+|||.|.|-|.+||-|
T Consensus 120 AwGlGWEVWldGM-EITQf-----T------YFQQvGGi~~-------------~pv~~EITYGLERiamylQ~vdnv~d 174 (284)
T PF02091_consen 120 AWGLGWEVWLDGM-EITQF-----T------YFQQVGGIDC-------------KPVSVEITYGLERIAMYLQGVDNVYD 174 (284)
T ss_dssp EEEEEEEEEETTC-EEEEE-----E------EEEEETTEE--------------SS--EEEEEEHHHHHHHHCT-SSGGG
T ss_pred ccccccEEEECCE-EEEEe-----e------eeeeeCCccc-------------cccceehhhhHHHHHHHHhCCCeeEe
Confidence 3567899999998 98521 0 0111 12321 35667799999999999999999999
Q ss_pred ccc
Q 012612 448 AIP 450 (460)
Q Consensus 448 v~~ 450 (460)
++.
T Consensus 175 l~w 177 (284)
T PF02091_consen 175 LIW 177 (284)
T ss_dssp SEE
T ss_pred eee
Confidence 864
No 220
>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB3 has a pronounced groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for strong ssDNA binding []. ; PDB: 1IYJ_D 1MIU_A.
Probab=48.00 E-value=2e+02 Score=25.44 Aligned_cols=87 Identities=8% Similarity=0.082 Sum_probs=48.7
Q ss_pred CCCCEEEEEEEEeeeccCCCe-EEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~-~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~ 105 (460)
..=.+|-+.|-|.++.+..++ .-+-|.|... +-+.|.+..+...|..-. .|++|.+|.++----++.+..+--.+.
T Consensus 16 pp~~EvD~VG~VvsV~~~~~f~~~vYLsD~~~-Nll~Ikfw~~l~~~~~eD--ilk~~~liA~SNLqwR~~s~s~iP~~~ 92 (143)
T PF09104_consen 16 PPYGEVDTVGFVVSVSKKQGFQPLVYLSDECH-NLLAIKFWTGLNQYGYED--ILKPGSLIAASNLQWRPESTSGIPTLF 92 (143)
T ss_dssp TCCCEEEEEEEEEEEE--TTS--EEEEE-TTS--EEEEEESS-------SS-----TT-EEEEEEEEE-S-TTSSS-EEE
T ss_pred CCccccceEEEEEEEEecCCCceeEEeecCCc-cEEEEEeccCccccchhh--hcCcceEEEEeeeEeecccccCCCeeE
Confidence 344678999999999765433 4467899875 457787777654332212 389999999986544444444456678
Q ss_pred EeEEEEEecCC
Q 012612 106 VNKIVLVGKSD 116 (460)
Q Consensus 106 ~~~i~ils~~~ 116 (460)
+.++.+.|..+
T Consensus 93 A~d~S~FS~nP 103 (143)
T PF09104_consen 93 ATDLSVFSANP 103 (143)
T ss_dssp EECCEEEESS-
T ss_pred eccceeeecCc
Confidence 89999999874
No 221
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=47.80 E-value=28 Score=32.07 Aligned_cols=37 Identities=11% Similarity=0.369 Sum_probs=29.4
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecCC
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~~ 116 (460)
|+.|+.|.|+|.+..+. .+ ...+||.|+++.+|++..
T Consensus 67 l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~~ 109 (182)
T PRK08486 67 LSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSKS 109 (182)
T ss_pred cCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCCC
Confidence 99999999999998652 12 236999999999997653
No 222
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=47.60 E-value=21 Score=26.76 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhCCceee
Q 012612 149 RVRNALAYATHKFFQENGFIWI 170 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV 170 (460)
+.|.+|++.||+||...|=++|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4689999999999999997766
No 223
>PRK04036 DNA polymerase II small subunit; Validated
Probab=47.50 E-value=67 Score=34.50 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=44.5
Q ss_pred CCCEEEEEEEEeeeccC-CCeEEEEEEcCCCccceEEEEeCCccch-hhHhccCCCCCcEEEEEeeEee
Q 012612 28 VGLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~V~G~v~~ 94 (460)
.++.+.|.|-|..+|.- .+-..+.|-|.+| ++++++.++...+ +.... +-+|.+|.|.|+...
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~~~~~LED~sg--rv~l~~~~~~~~~~~~~~~--lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGHKIVELEDTTG--TFPVLIMKDREDLAELADE--LLLDEVIGVEGTLSG 216 (504)
T ss_pred CCceEEEEEEEEEeecccCCceEEEEECCCC--eEEEEeecchhhhhhhhhc--ccCceEEEEEEEEcC
Confidence 46789999999999853 2222478999996 5999886543122 21234 889999999998753
No 224
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=45.74 E-value=87 Score=35.19 Aligned_cols=109 Identities=8% Similarity=0.045 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCC-ccccccccHHHHH-HHHh----cCC--CceEEE
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETYA----TAL--SNVYTF 222 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~~----~g~--~rvfeI 222 (460)
...+.+.+|+.|...||.|+-|-.+++.... ..++..+. |... .-.+||+|-=--+ +.+. .+. -|+|||
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~-~~~~i~l~--NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEi 476 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQESF-SKNEIKLK--NPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEI 476 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccChhhc-CCCcEEEe--CCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEe
Confidence 4556777899999999999999999875221 11223332 2222 2245666543332 3222 221 369999
Q ss_pred ecccccCCCCCCCCCCccceeeeeec--------------CCCHHHHHHHHHHHHHHH
Q 012612 223 GPTFRAENSNTSRHLAEFWMIEPELA--------------FADLKDDMACATAYLQYV 266 (460)
Q Consensus 223 ~~~FR~E~~~~~rHl~EFt~lE~e~~--------------~~~~~~~~~~~e~li~~l 266 (460)
|+||-..+. . ..|-.++=.-++ -.|+.++...+|.++..+
T Consensus 477 G~Vf~~~~~-~---~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l 530 (704)
T CHL00192 477 GHVFNLDSS-S---IIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKL 530 (704)
T ss_pred eeeEcCCCc-c---ccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHC
Confidence 999943211 0 112222211111 136888888888888644
No 225
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=45.71 E-value=1.4e+02 Score=36.36 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=51.2
Q ss_pred CCEEEEEEEEeeec--c--CCC-eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEE
Q 012612 29 GLMIVVAGWVRTLR--A--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (460)
Q Consensus 29 ~~~V~v~GwV~~~R--~--~g~-~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~E 103 (460)
+..|+|.|.|-.+- . .|+ +.=+.|.|.++.-.++..+..+ ..-+.+.. |+.|+.|.|+|.+....-. +++.
T Consensus 236 ~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~-~~~~~~~~--~~~g~~v~~~g~~~~d~~~-~~~~ 311 (1437)
T PRK00448 236 ERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDK-EDLKKFDE--IKKGDWVKVRGSVQNDTFT-RDLV 311 (1437)
T ss_pred CCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCc-chhHHHhc--CCCCCEEEEEEEEeccCCC-CceE
Confidence 46799999998772 2 344 3336789988653333333222 22233456 9999999999999875422 3677
Q ss_pred EEEeEEEEE
Q 012612 104 LKVNKIVLV 112 (460)
Q Consensus 104 l~~~~i~il 112 (460)
+.+.++..+
T Consensus 312 ~~~~~~~~~ 320 (1437)
T PRK00448 312 MNAQDINEI 320 (1437)
T ss_pred EEeeeeeec
Confidence 777776643
No 226
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=45.04 E-value=15 Score=35.32 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=40.6
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 447 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ird 447 (460)
.+...+|+.++|+ ||.- -.| |.. .|++. -|..+=+--|+|||.|.|-|.+||-|
T Consensus 121 AwGLGWEVWldGM-EITQ-----FTY------FQQvGGi~~-------------~pv~~EiTYGLERiamylQ~vd~v~d 175 (279)
T cd00733 121 AWGLGWEVWLDGM-EVTQ-----FTY------FQQVGGIPC-------------KPISVEITYGLERIAMYLQGVDNVYD 175 (279)
T ss_pred ccccccEEEECCe-eeee-----eee------eeeeCCeec-------------cccceeeehhHHHHHHHHhCCCceec
Confidence 3556799999998 8852 111 111 23332 35667789999999999999999998
Q ss_pred ccc
Q 012612 448 AIP 450 (460)
Q Consensus 448 v~~ 450 (460)
+..
T Consensus 176 l~w 178 (279)
T cd00733 176 IEW 178 (279)
T ss_pred ccc
Confidence 754
No 227
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=44.74 E-value=14 Score=34.89 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.9
Q ss_pred CCcceeccHHHHHHHHcCCCCcccc
Q 012612 424 PHAGFGLGFERLVQFATGVENIRDA 448 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~~~~Irdv 448 (460)
|...+.|++|+|+|...|.++||..
T Consensus 188 ~v~~~Eidl~~l~~~~~~~~~~~~~ 212 (218)
T cd00496 188 SGFAFGIGLERLAMLKYGIPDIRLF 212 (218)
T ss_pred eEEEEEecHHHHHHHHhCCcHHHHH
Confidence 4467899999999999999999963
No 228
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=44.65 E-value=36 Score=30.94 Aligned_cols=36 Identities=11% Similarity=0.445 Sum_probs=28.9
Q ss_pred CCCCcEEEEEeeEeecC----CCC--ceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~~--~~~El~~~~i~ils~~ 115 (460)
|+.||.|.|+|.+.... .++ ..+||.+++|.+|+..
T Consensus 70 LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 70 LRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred CCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 99999999999998753 121 3689999999998754
No 229
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=44.29 E-value=16 Score=35.25 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=41.1
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 448 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv 448 (460)
.+...+|+.++|+ ||.- -.|=++ -.|++. -|..+=+--|+|||.|.|-|.+||-|+
T Consensus 125 AwGlGWEVWldGM-EITQ-----FTYFQQ-----vGGi~~-------------~pv~~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 125 AWGLGWEVWLDGM-EVTQ-----FTYFQQ-----VGGIEC-------------KPVTGEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred ccccceEEEECCe-eeee-----eeeeee-----eCCeec-------------cccceeeehhHHHHHHHHhCCCceeee
Confidence 3556799999998 8852 111111 123332 356677899999999999999999988
Q ss_pred ccc
Q 012612 449 IPF 451 (460)
Q Consensus 449 ~~F 451 (460)
..=
T Consensus 181 ~w~ 183 (283)
T PRK09348 181 VWN 183 (283)
T ss_pred ecC
Confidence 643
No 230
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.91 E-value=42 Score=39.35 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCCEEEEEEEEeeeccC-----C-CeEEEEEEcCCCccceEEEE
Q 012612 28 VGLMIVVAGWVRTLRAQ-----S-SVTFIEVNDGSCLSNMQCVM 65 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~-----g-~~~Fv~lrD~~~~~~iQvv~ 65 (460)
.+..|+++|.|.++|.. | .++|+.|.|.+|. +.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~--ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGS--IEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCc--EEEEe
Confidence 45679999999876642 2 4999999999975 88875
No 231
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=43.70 E-value=25 Score=37.61 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=33.8
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeec--CCCHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELA--FADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~--~~~~~~~~~~~e~li~~l 266 (460)
|+||||+|||.+.....+|+..+.+...-.. -.|+.++...++.|+..+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 7999999998863223457766666642121 237889999999988764
No 232
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=43.24 E-value=41 Score=30.99 Aligned_cols=36 Identities=17% Similarity=0.483 Sum_probs=29.1
Q ss_pred CCCCcEEEEEeeEeecCC----C--CceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~~----~--~~~~El~~~~i~ils~~ 115 (460)
|+.||.|.|+|.+....= + ...+||.|++|.+|+..
T Consensus 70 LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 70 LKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred hCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 999999999999987521 1 23699999999999754
No 233
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=43.07 E-value=1.5e+02 Score=24.36 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=40.8
Q ss_pred eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEe
Q 012612 47 VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (460)
Q Consensus 47 ~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils 113 (460)
.-=+.|+||.. ..|.++....- ..+..+.|+.|++|.+.-....+-.. +.--|.+.+++++.
T Consensus 39 RyR~~lSDG~~--~~~amLatqln--~lv~~g~l~~~siirl~~y~~n~v~~-~k~iiiil~leVv~ 100 (101)
T PF04057_consen 39 RYRLVLSDGVH--SIQAMLATQLN--HLVESGELQKGSIIRLKQYTCNTVKN-GKKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEEESSSE--EEEEEESGGGH--HHHHTTSSSTT-EEEEEEEEEEESTT-SSEEEEEEEEEEEE
T ss_pred eEEEEEEChHH--HHHHHhHHHhH--HHHhcCCcccCCEEEEeEEEEeeccC-CCEEEEEEeeEEEe
Confidence 34467999984 59999876542 12344459999999999776654331 23457777887764
No 234
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=43.02 E-value=15 Score=36.19 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=30.2
Q ss_pred eeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHc
Q 012612 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440 (460)
Q Consensus 372 ~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~ 440 (460)
--|+.+.+|. .|++|+.-. + .--|..|||+|+|||+.+|+
T Consensus 241 ivFe~~~~~~-~i~~GGRYD-------------~---------------~~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 241 LFFRFFDGNS-TLASGGNYE-------------I---------------DGISSSGFALYTDNLIEILL 280 (281)
T ss_pred eEEEEEECCc-eeccccCCC-------------C---------------CCCCcceEEeeHHHHHHHhh
Confidence 3588888885 899998643 0 01288999999999998875
No 235
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=42.04 E-value=46 Score=30.38 Aligned_cols=51 Identities=10% Similarity=0.229 Sum_probs=34.6
Q ss_pred eEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecCC----C--CceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQG----S--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~----~--~~~~El~~~~i~ils~~ 115 (460)
+-|++-.... +. .+. |+.|+.|.|+|.+..+.= + ...+||.|+.|.+|...
T Consensus 49 i~~v~wgk~A--e~~~~~--l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 49 INCVIWRKQA--ENVANY--LKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEeCcHH--HHHHHH--cCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 5565554321 22 344 999999999999987631 1 13588899999888754
No 236
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=41.92 E-value=41 Score=30.42 Aligned_cols=36 Identities=14% Similarity=0.424 Sum_probs=29.0
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~ 115 (460)
|+.|+.|.|+|.+.... .+ ...+||.+++|.+|+..
T Consensus 70 L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 70 LRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred cCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 99999999999998752 12 13689999999998865
No 237
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=40.53 E-value=1.1e+02 Score=34.82 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-CCCceeeeccccCC-ccccccccHHHHH-HHH----hcCCC--c
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC-E--G-AGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETY----ATALS--N 218 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~----~~g~~--r 218 (460)
...+...+|+.|...||.|+-|-.+++..- . + ..+...+. |... .--+||+|-=..+ +.+ ..+.. +
T Consensus 489 ~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~--NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~ 566 (791)
T PRK00629 489 AQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLLL--NPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVA 566 (791)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEEe--CCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEe
Confidence 445567789999999999999999987411 1 0 01122221 2222 2235666543332 322 23333 7
Q ss_pred eEEEecccccCCCCCCCCCCccceeeeeecC------------CCHHHHHHHHHHHHHHH
Q 012612 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 219 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~------------~~~~~~~~~~e~li~~l 266 (460)
+||||+||...+. ...|-++|=+-++. .|+.++...++.++..+
T Consensus 567 lFEiG~Vf~~~~~----~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l 622 (791)
T PRK00629 567 LFEIGRVFLPDGD----LPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEAL 622 (791)
T ss_pred EEeeeeeeCCCCC----CCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHc
Confidence 9999999964210 11233333332222 47888888888888654
No 238
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.11 E-value=75 Score=28.57 Aligned_cols=36 Identities=14% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~ 115 (460)
|..|+.|.|+|.+.... .+ ...++|.|++|..|...
T Consensus 69 l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 69 LKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred CCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 99999999999998652 12 23689999999887654
No 239
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=39.99 E-value=1.6e+02 Score=21.98 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=31.2
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc--h-hh-HhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQ-VKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~-~~-~~~~~l~~g~~V~V~ 89 (460)
.+.|+|.++...| +|++|.+.. +..++..+... + .. -.. ++.||.|.|.
T Consensus 5 ~v~g~V~~i~~~g--~~v~l~~~~----~~g~i~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG--VFIDIDGTN----VSGLCHKSEISDNRVADASKL--FRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce--EEEEECCCC----eEEEEEHHHCCCCccCCHhHe--ecCCCEEEEE
Confidence 4899999998766 899987521 45555533211 1 11 123 7999999876
No 240
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=39.98 E-value=26 Score=37.51 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=25.8
Q ss_pred CCcceeccHHHHHHHHcCCCCcccc--ccccCCC
Q 012612 424 PHAGFGLGFERLVQFATGVENIRDA--IPFPRTP 455 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~~~~Irdv--~~FPr~~ 455 (460)
|...++|++|||+|...+.++||+. -.||+.|
T Consensus 317 pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFP 350 (529)
T PRK06253 317 PVMNLGLGVERLAMILYGAEDVREMVYPQFYEWE 350 (529)
T ss_pred ceEEEEEeHHHHHhhhcCcccccccCcCCCCCCC
Confidence 5678999999999999998999984 3455554
No 241
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=38.92 E-value=94 Score=22.91 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=32.4
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc--c-hhh-HhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQ-VKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~--~-~~~-~~~~~l~~g~~V~V~ 89 (460)
.+.|+|.++...| +|+.|.++ +...+..... . .+. -.. ++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~G--v~V~l~~~-----~~G~v~~s~l~~~~~~~~~~~--~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG--VFVTLGRG-----VDARVRVSELSDSYLKDWKKR--FKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc--EEEEeCCC-----CEEEEEHHHCCchhhcCHhhc--cCCCCEEEEE
Confidence 4799999998877 89999754 4566654321 1 111 223 8899998876
No 242
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=38.52 E-value=3.1e+02 Score=25.98 Aligned_cols=81 Identities=9% Similarity=0.101 Sum_probs=51.9
Q ss_pred CCCEEEEEEEEeee---cc-CCCeEEEEE-------EcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeec-
Q 012612 28 VGLMIVVAGWVRTL---RA-QSSVTFIEV-------NDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS- 95 (460)
Q Consensus 28 ~~~~V~v~GwV~~~---R~-~g~~~Fv~l-------rD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~- 95 (460)
....|.+.|++.+= |. ..+-.|... +|.+ .-|.|++..... .... +..|+.|.|+|.+..=
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~--D~i~v~v~~rla---e~~~--l~kG~~v~VeGqlrsy~ 79 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSK--DILPVTVSERLL---AGMD--LKVGTLVIVEGQLRSYN 79 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCc--cEEEEEEEhhhh---hhhc--ccCCCEEEEEEEEEEec
Confidence 45678999998654 22 133334332 2444 347888876532 1234 8899999999999821
Q ss_pred -C-CC--CceEEEEEeEEEEEecC
Q 012612 96 -Q-GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 96 -~-~~--~~~~El~~~~i~ils~~ 115 (460)
. .+ -.-+||.+.+++.|++.
T Consensus 80 ~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 80 KFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred cCCCCcEEEEEEEEEEEEEEccCC
Confidence 1 12 23588899999988875
No 243
>PLN02972 Histidyl-tRNA synthetase
Probab=38.34 E-value=22 Score=39.88 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=31.0
Q ss_pred eeecccCC--ceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 373 AMDMLVPR--IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 373 ~fDl~~~G--~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
-|+.+..| ++-|++|+ +|+.|...| .---.|.-||++|+|||+.++..
T Consensus 606 VFE~~~~g~~~gsIagGG----RYD~Lv~~F-----------------gG~~vPAVGFSiGIERL~~~L~~ 655 (763)
T PLN02972 606 IYEAVFKGAQVGSIAAGG----RYDNLVGMF-----------------SGKQVPAVGVSLGIERVFAIMEQ 655 (763)
T ss_pred EEEEEEcCCccceeeecC----CchhHHHhc-----------------CCCCCCEEEEEecHHHHHHHHHH
Confidence 36777654 34677776 344444333 10134889999999999988854
No 244
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=37.83 E-value=43 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=18.7
Q ss_pred HHcCCCcccH-HHHHHHHhcCCCCC
Q 012612 402 DELKLNRDSY-WWYLDLRHYGSVPH 425 (460)
Q Consensus 402 ~~~~~~~~~~-~~yl~~~~~G~pp~ 425 (460)
+.+|+.+.+. .|...+.++|.||.
T Consensus 11 ~ALg~~~~~~PPwl~~M~~~G~PP~ 35 (48)
T PF04046_consen 11 EALGMQENDPPPWLYRMRRLGYPPG 35 (48)
T ss_pred HHcCCCCCCCChHHHHHHhcCCCCC
Confidence 4567766544 89999999999985
No 245
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=37.74 E-value=1.1e+02 Score=35.01 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHHhhhhCCceeecCceeecCC-CCCC-----CCceeeeccccCC-ccccccccHHHHH-HHH----hcCCC--ceEE
Q 012612 156 YATHKFFQENGFIWISSPIITASD-CEGA-----GEQFCVTTLDFFE-KPAFLTVSGQLNA-ETY----ATALS--NVYT 221 (460)
Q Consensus 156 ~~iR~ff~~~gF~EV~TPiL~~~~-~eg~-----~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~----~~g~~--rvfe 221 (460)
+.+|++|...||.|+-|-.|++.. .... .....+. |-.. .--+||+|-=--+ +.+ ..+.. |+||
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~--NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFE 575 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEIK--NPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFE 575 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEEe--CCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEe
Confidence 578999999999999999998751 1100 0012222 2222 1234555533322 222 23344 7999
Q ss_pred EecccccCCCCCCCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 222 FGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 222 I~~~FR~E~~~~~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
||+||...+. . ..|-.+|=+-++. .|+.++...+|.++..+
T Consensus 576 iG~V~~~~~~-~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l 629 (798)
T TIGR00472 576 IGKVFAKDGL-G---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELL 629 (798)
T ss_pred eecccCCCCC-C---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHc
Confidence 9999954221 1 1244444333322 36888888888888644
No 246
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=37.37 E-value=98 Score=29.39 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=52.8
Q ss_pred CCEEEEEEEEeee---cc--CC-CeEEEEEE-cCC--CccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC---
Q 012612 29 GLMIVVAGWVRTL---RA--QS-SVTFIEVN-DGS--CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ--- 96 (460)
Q Consensus 29 ~~~V~v~GwV~~~---R~--~g-~~~Fv~lr-D~~--~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~--- 96 (460)
-..|.+.|++.+- |. .| .++-+.|- +.. ...-+.|++...... .+.. |+.||-|.|+|.+....
T Consensus 109 ~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~Ae--~~~~--l~KG~~V~V~GrL~sr~y~~ 184 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRNAR--FCKT--LEVGDNIRVWGRVQSREYQK 184 (219)
T ss_pred ccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHHhH--HHhh--CCCCCEEEEEEEEEecceEc
Confidence 4568899998764 43 23 34444442 211 012367777654322 2455 99999999999998652
Q ss_pred -CC------CceEEEEEeEEEEEecCC
Q 012612 97 -GS------KQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 97 -~~------~~~~El~~~~i~ils~~~ 116 (460)
.+ -...||.|++++.|++..
T Consensus 185 k~g~~~g~kr~~~eV~v~~i~~l~~~~ 211 (219)
T PRK05813 185 KLSEGEVVTKVAYEVSISKMEKVEKEE 211 (219)
T ss_pred CCCCccceEEEEEEEEEEEEEEcCChh
Confidence 11 125899999999988754
No 247
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=37.35 E-value=56 Score=29.44 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=28.3
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~ 115 (460)
|+.||.|.|+|.+.... .+ ...+||.|+.|.+|+-.
T Consensus 61 L~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 61 LKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred CCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 99999999999998652 12 13689999999988554
No 248
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=37.15 E-value=22 Score=34.42 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=41.3
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 447 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ird 447 (460)
.+.-.+|+.++|+ ||.- -.| |.. .|++. -|..+=+--|+|||.|.|-|.+||-|
T Consensus 122 AwGlGWEVWldGM-EITQ-----FTY------FQQvGGi~~-------------~pv~~EITYGLERiaMylQ~vd~v~d 176 (293)
T TIGR00388 122 AWGLGWEVWLDGM-EVTQ-----FTY------FQQVGGLEC-------------KPVSVEITYGLERLAMYIQGVENVYD 176 (293)
T ss_pred ccccccEEEECCe-eeee-----eee------eeeeCCeec-------------cccceeeehhHHHHHHHHhCCCeeee
Confidence 3556799999998 8852 111 111 23332 35556788999999999999999999
Q ss_pred ccccc
Q 012612 448 AIPFP 452 (460)
Q Consensus 448 v~~FP 452 (460)
+..=.
T Consensus 177 l~w~~ 181 (293)
T TIGR00388 177 LEWSD 181 (293)
T ss_pred eeecC
Confidence 86543
No 249
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=36.75 E-value=3.2e+02 Score=32.84 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCCEEEEEEEEeeecc----CCCeE-EEEEEcCCCccceEEEEeC-CccchhhHhccCCCCCcEEEEEeeEeecCCCCce
Q 012612 28 VGLMIVVAGWVRTLRA----QSSVT-FIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~----~g~~~-Fv~lrD~~~~~~iQvv~~~-~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (460)
....|+|.|.|-.+-. .|+.+ -+.|.|.+.. |.|..-. +....+.+.. |+.|+.|.|+|.+....-. ++
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s--~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~ 80 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDS--LILKKFLKSEEDPEKFDG--IKIGKWVRARGKIELDNFS-RD 80 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCC--EEEEEecccccchHHHhh--cCCCcEEEEEEEEeccCCC-Cc
Confidence 3467999999976632 35544 4788998854 5554332 2222334556 9999999999999765422 36
Q ss_pred EEEEEeEEEEEe
Q 012612 102 VELKVNKIVLVG 113 (460)
Q Consensus 102 ~El~~~~i~ils 113 (460)
+.+.+.+|..+.
T Consensus 81 ~~~~~~~~~~~~ 92 (1213)
T TIGR01405 81 LQMIIKDIEEIP 92 (1213)
T ss_pred eEEEeeeeeecC
Confidence 777777776543
No 250
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.50 E-value=1.9e+02 Score=26.71 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=43.0
Q ss_pred CEEEEEEEEeeeccCC---CeEEEEEEcCCCccceEEEEeCC-ccchhhHhccCCCCCcEEEEEeeEee
Q 012612 30 LMIVVAGWVRTLRAQS---SVTFIEVNDGSCLSNMQCVMTSD-AEGYDQVKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 30 ~~V~v~GwV~~~R~~g---~~~Fv~lrD~~~~~~iQvv~~~~-~~~~~~~~~~~l~~g~~V~V~G~v~~ 94 (460)
++|.|.|-|.++-.-| .+.=+.+.|++|. +=|+...- ......++. +...|.|.|.|++..
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGs--F~Vyag~yqPEa~a~l~~--ve~~~~VaViGKi~~ 110 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGS--FYVYAGQYQPEAKAFLED--VEVPDLVAVIGKIRT 110 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCce--EEEEcCCCChHHHHHHHh--ccCCceEEEecccce
Confidence 5678999998876544 3666788899975 54543221 223455777 999999999999875
No 251
>PRK08059 general stress protein 13; Validated
Probab=35.82 E-value=1.5e+02 Score=25.08 Aligned_cols=65 Identities=17% Similarity=0.379 Sum_probs=38.8
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc--h-hhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~-~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
.+.|.|.++...| +|+.|.++ ++.++..+... + ... .. ++.||.|.|. +.......+.+.+.+..
T Consensus 10 iv~G~V~~i~~~G--~fV~i~~~-----~~Gli~~sel~~~~~~~~~~~--~~vGD~I~vk--I~~id~~~~~i~lslk~ 78 (123)
T PRK08059 10 VVTGKVTGIQPYG--AFVALDEE-----TQGLVHISEITHGFVKDIHDF--LSVGDEVKVK--VLSVDEEKGKISLSIRA 78 (123)
T ss_pred EEEEEEEEEecce--EEEEECCC-----CEEEEEHHHCCcccccCHHHc--CCCCCEEEEE--EEEEECCCCeEEEEEEE
Confidence 5799999998877 89999654 35555543211 1 111 23 7999999986 33332223356655443
No 252
>PRK06386 replication factor A; Reviewed
Probab=35.77 E-value=3e+02 Score=28.23 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeecc------CC--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCc
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA------QS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~------~g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (460)
+|+||.. .++.|+|.|+|.++-. .| .+.=-.|-|.|| +|..++.... .. |..||
T Consensus 4 kI~DI~~--------~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG--~I~fT~W~~~------~~--l~~Gd 65 (358)
T PRK06386 4 KISDINA--------ARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETG--TVPFTAWEFP------DA--VKSGD 65 (358)
T ss_pred chhhcCC--------CCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcc--eEEEEecCCc------cc--CCCCC
Confidence 5677754 3566888888885531 12 233334678885 4777776531 24 89999
Q ss_pred EEEEEeeEeecCCCCceEEEEEeEE
Q 012612 85 SIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 85 ~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
+|.+.+-..+.-.+ ..+|.+.+.
T Consensus 66 ~v~i~na~v~~~~G--~~~Lnv~~~ 88 (358)
T PRK06386 66 VIEIKYCYSKEYNG--KIRIYFDSR 88 (358)
T ss_pred EEEEEeEEEeeECC--EEEEEEcCc
Confidence 99999887765444 678887543
No 253
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=35.16 E-value=3e+02 Score=24.65 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=42.2
Q ss_pred CCCCCCEEEEEEEEeeeccCCCeEEEEEE----cCCCc--------cceEEEEeCCccchhhHhccCCCCCcEEEEEeeE
Q 012612 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVN----DGSCL--------SNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNV 92 (460)
Q Consensus 25 ~~~~~~~V~v~GwV~~~R~~g~~~Fv~lr----D~~~~--------~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v 92 (460)
....|+.|+..|.|.+++...+-+.|.|. |.++. +++=+.++ .|-.=.. ...|-.|+|.|+|
T Consensus 30 ~~~~G~~VrwGG~I~~v~n~~~~T~leV~~~PLd~~grP~~~~~s~GRFla~~~----gFLDP~~--y~~Gr~vTV~G~v 103 (160)
T PF03843_consen 30 DAYQGQQVRWGGVIVNVRNLPDQTELEVVQYPLDSSGRPQTDDPSQGRFLARVP----GFLDPAI--YAPGRLVTVVGTV 103 (160)
T ss_pred hhcCCCEEEECCEEEEEEECCCceEEEEEEccCCCCCCcCCCCCCCCEEEEEeC----CCcCHHH--cCCCCEEEEEEEe
Confidence 35789999999999999988766777663 33321 11111111 1111112 6689999999999
Q ss_pred eecCC
Q 012612 93 VPSQG 97 (460)
Q Consensus 93 ~~~~~ 97 (460)
.....
T Consensus 104 ~g~~~ 108 (160)
T PF03843_consen 104 TGMET 108 (160)
T ss_pred cceEE
Confidence 87654
No 254
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=35.15 E-value=1.7e+02 Score=20.98 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=30.5
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc--h--hhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y--DQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~--~~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|..+...| +|+.+.++ .+..+..+... + ..-+. ++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~g--~~v~i~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG--AFVELGGG-----ISGLVHISQIAHKRVKDVKDV--LKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee--EEEEECCC-----CEEEEEhHHcCCcccCCHHHc--cCCCCEEEEE
Confidence 4678898888766 78888644 35666543211 1 11123 8999999876
No 255
>PRK07252 hypothetical protein; Provisional
Probab=34.81 E-value=2e+02 Score=24.38 Aligned_cols=66 Identities=17% Similarity=0.321 Sum_probs=38.3
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
.+.|.|.++...| +||.|..+ +...+..... .+.... ..++.||.|.|. +.......+.+.+....
T Consensus 6 iv~G~V~~V~~~G--~fVei~~~-----~~GllhiseLs~~~~~~~~-~~~~vGD~V~Vk--I~~iD~~~~ri~lSlk~ 74 (120)
T PRK07252 6 KLKGTITGIKPYG--AFVALENG-----TTGLIHISEIKTGFIDNIH-QLLKVGEEVLVQ--VVDFDEYTGKASLSLRT 74 (120)
T ss_pred EEEEEEEEEeCcE--EEEEECCC-----CEEEEEHHHcCCccccChh-hccCCCCEEEEE--EEEEeCCCCEEEEEEee
Confidence 4799999999877 88888543 3555554321 122221 138999999886 33322222356555433
No 256
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=34.20 E-value=1.8e+02 Score=20.96 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=31.0
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc---hhhH-hccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~---~~~~-~~~~l~~g~~V~V~ 89 (460)
.+.|.|..+...| +|++|.++ +...+..+... +... +. ++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G--~~v~l~~~-----~~g~l~~~~l~~~~~~~~~~~--~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG--AFVEILPG-----KDGLVHISELSDERVEKVEDV--LKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE--EEEEeCCC-----CEEEEEhHHcCCccccCHHHc--cCCCCEEEEE
Confidence 4689999998866 78998754 34555543211 1111 23 7899999886
No 257
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=33.73 E-value=69 Score=27.64 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=27.9
Q ss_pred CCCCcEEEEEeeEeecCC---CC--ceEEEEEeEEEEEec
Q 012612 80 ITTGASIWIQGNVVPSQG---SK--QKVELKVNKIVLVGK 114 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~~---~~--~~~El~~~~i~ils~ 114 (460)
|+.||.|.|+|.+....= ++ ...||.++++.+|..
T Consensus 65 l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 65 ASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred cCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 999999999999987532 21 358999999998864
No 258
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=33.71 E-value=37 Score=35.15 Aligned_cols=59 Identities=22% Similarity=0.474 Sum_probs=35.8
Q ss_pred eeecccCCc---eeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCC-Ccccc
Q 012612 373 AMDMLVPRI---GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE-NIRDA 448 (460)
Q Consensus 373 ~fDl~~~G~---~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~-~Irdv 448 (460)
-|+.+.++. +-|++|+. |+.+..++.. ...|..||++|+|||+.++.... +=.+|
T Consensus 263 vFe~~~~~~g~~~~i~~GGR----YD~L~~~f~~-----------------~~~pavGfs~~le~l~~~l~~~~~~~~~v 321 (412)
T PRK00037 263 VFEFVTDDLGAQGTVCGGGR----YDGLVEQFGG-----------------PPTPAVGFAIGVERLLLLLEELGEEPVDV 321 (412)
T ss_pred EEEEEECCCCccceeeeccc----hhHHHHHhCC-----------------CCCceEEEEEcHHHHHHHHHhcCCCCCCE
Confidence 377777654 36777774 4444443311 13477899999999998886543 11244
Q ss_pred cccc
Q 012612 449 IPFP 452 (460)
Q Consensus 449 ~~FP 452 (460)
..+|
T Consensus 322 lI~~ 325 (412)
T PRK00037 322 YVVP 325 (412)
T ss_pred EEEE
Confidence 4444
No 259
>PRK05807 hypothetical protein; Provisional
Probab=33.47 E-value=2.9e+02 Score=23.94 Aligned_cols=65 Identities=15% Similarity=0.369 Sum_probs=39.9
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc--ch-hhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~--~~-~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
.|.|.|..+...| +||.| ++ .+..+..+.. .| ..+. ..++.||.|.|. |..... .+.++|.+..+
T Consensus 8 vv~G~Vt~i~~~G--afV~L-~~-----~~Glvhiseis~~~v~~~~-~~~kvGd~V~Vk--V~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 8 ILEGTVVNITNFG--AFVEV-EG-----KTGLVHISEVADTYVKDIR-EHLKEQDKVKVK--VISIDD-NGKISLSIKQA 75 (136)
T ss_pred EEEEEEEEEECCe--EEEEE-CC-----EEEEEEhhhcccccccCcc-ccCCCCCEEEEE--EEEECC-CCcEEEEEEec
Confidence 6889999988777 89999 43 2565654432 12 1122 138999999876 333322 34677766553
No 260
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=33.27 E-value=1.6e+02 Score=21.25 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=34.9
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|..+...|..+++.+.-+.+ ..|-+.+..+. +..+ . |.+||-|.+.
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~-~~l~a~it~~~--~~~L-~--L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGG-ETLTARITPES--AEEL-G--LKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTS-EEEEEEEEHHH--HHHC-T---STT-EEEEE
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEEcHHH--HHHc-C--CCCCCEEEEE
Confidence 5899999999999999999987654 23666665431 2222 3 8899988875
No 261
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=32.21 E-value=90 Score=34.72 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhhhCCceeecCceeecCCC----CCCCC-ceeeeccccC-CccccccccHHHHH-HHHhc----CC-
Q 012612 149 RVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGE-QFCVTTLDFF-EKPAFLTVSGQLNA-ETYAT----AL- 216 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~-~F~v~~~~~~-~~~~~L~~Spql~l-~l~~~----g~- 216 (460)
-..+.....+|++|...||.||-|-.|++..- ....+ .-.+. |-. ..-..||+|---.| +.+.. ..
T Consensus 351 ~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~--NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~ 428 (650)
T COG0072 351 TPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELA--NPISEEYSVLRTSLLPGLLEALSYNKNRKNP 428 (650)
T ss_pred ChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEec--CCcchhHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 35566778899999999999999999987421 11111 11121 111 11234555544443 33321 22
Q ss_pred -CceEEEecccccCCCCCC--CC---C------CccceeeeeecCCCHHHHHHHHHHHHHHHH
Q 012612 217 -SNVYTFGPTFRAENSNTS--RH---L------AEFWMIEPELAFADLKDDMACATAYLQYVV 267 (460)
Q Consensus 217 -~rvfeI~~~FR~E~~~~~--rH---l------~EFt~lE~e~~~~~~~~~~~~~e~li~~l~ 267 (460)
-|+||||++|-.++.... +| + .+-|+-. .-.++.++...++.++..+-
T Consensus 429 ~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~---~~v~f~d~Kg~ve~ll~~lg 488 (650)
T COG0072 429 DVRIFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK---RPVDFYDAKGDLEALLEALG 488 (650)
T ss_pred CeeEEEeeeeEecCCcccchhHHHHHHhhccccccccccC---CCcCHHHHHHHHHHHHHHhC
Confidence 579999999997533110 01 0 1111111 12467788887777777764
No 262
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=31.86 E-value=29 Score=37.91 Aligned_cols=95 Identities=14% Similarity=0.260 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccH-HHHHHHHhc----CCCceEEEeccc
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG-QLNAETYAT----ALSNVYTFGPTF 226 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Sp-ql~l~l~~~----g~~rvfeI~~~F 226 (460)
++|-+.+-+||.++|-..|.+--|.+.. +-+++++.|. ..+|....+ ...|+=...+|.
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~----------------d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCi 67 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPEN----------------DPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCL 67 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCC----------------CCCeeeeccchhhhhHHhcCCCCCCCCCcccccccc
Confidence 4677788899999998888765555421 1111222222 223333322 246788889999
Q ss_pred cc---CCCCCCCCCCccceeeeeecCCCH--HHHHHHHHHHH
Q 012612 227 RA---ENSNTSRHLAEFWMIEPELAFADL--KDDMACATAYL 263 (460)
Q Consensus 227 R~---E~~~~~rHl~EFt~lE~e~~~~~~--~~~~~~~e~li 263 (460)
|. |+.-+.||..=|.||=- .+|.|| ++.++.+=+++
T Consensus 68 R~~Dle~VG~~rHhTfFEMlGn-fSfgdYfK~eai~~awe~l 108 (594)
T PRK01584 68 RTGDIDEVGDLSHLTFFEMLGN-WSLGAYFKEESIKYSFEFL 108 (594)
T ss_pred ccccccccCCCcchhHHHhhcc-ccHhhhhHHHHHHHHHHHh
Confidence 96 45557899777777542 235564 44444444444
No 263
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=30.72 E-value=91 Score=28.50 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=29.1
Q ss_pred CCCCcEEEEEeeEeecC---CC--CceEEEEEe---EEEEEecCCC
Q 012612 80 ITTGASIWIQGNVVPSQ---GS--KQKVELKVN---KIVLVGKSDP 117 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~---~~--~~~~El~~~---~i~ils~~~~ 117 (460)
|..||.|.|+|.+..+. .+ ....||.|+ ++.+|++...
T Consensus 72 L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~~ 117 (175)
T PRK13732 72 LRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQ 117 (175)
T ss_pred cCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCCCC
Confidence 99999999999997642 12 135888888 8999887654
No 264
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=30.64 E-value=85 Score=27.79 Aligned_cols=36 Identities=6% Similarity=0.271 Sum_probs=28.0
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~ 115 (460)
|..||.|.|+|.+.... .+ ...+||.+++|.+|...
T Consensus 72 l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 72 YQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred cCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 99999999999998652 11 13588999999987654
No 265
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.56 E-value=10 Score=39.63 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=0.0
Q ss_pred EEecccccCCC--CCCCCCCccceeeee
Q 012612 221 TFGPTFRAENS--NTSRHLAEFWMIEPE 246 (460)
Q Consensus 221 eI~~~FR~E~~--~~~rHl~EFt~lE~e 246 (460)
+||++||||-+ .+--+--||||-|+|
T Consensus 214 qiG~~fRNEISpRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 214 QIGKSFRNEISPRSGLLRVREFTMAEIE 241 (599)
T ss_pred HhchHhhhccCcccCceeEEEeehHHhh
No 266
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=29.79 E-value=23 Score=40.76 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHH-HHHHHhcC-----CCceEEEecc
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQL-NAETYATA-----LSNVYTFGPT 225 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql-~l~l~~~g-----~~rvfeI~~~ 225 (460)
++|-+.+-+||.++|-.-|..=-+.+ -...+++|+.|.-. +|....+| ..|+-...||
T Consensus 59 ~eiR~~fl~FF~~~gH~~v~s~pvvp----------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkC 122 (902)
T TIGR03683 59 DEMREAFLSFFEKHGHTRIKRYPVVA----------------RWRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPC 122 (902)
T ss_pred HHHHHHHHHHHHhCCCEEeCCcCcCc----------------CCCCCeeEeecchhhhhHhhcCCCCCCCCCCceecccc
Confidence 45666777899999966654322211 11122555555433 34455434 4788889999
Q ss_pred cccCCC----CCCCCCCccceee
Q 012612 226 FRAENS----NTSRHLAEFWMIE 244 (460)
Q Consensus 226 FR~E~~----~~~rHl~EFt~lE 244 (460)
.|..+. .|.||+.=|.||=
T Consensus 123 iR~nDldnVG~t~rH~TfFEMlG 145 (902)
T TIGR03683 123 IRLNDIDNVGRTGRHLTCFEMMA 145 (902)
T ss_pred ccccccccccCCCCcchhhhhcc
Confidence 997544 3689988777764
No 267
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=29.12 E-value=3.6e+02 Score=23.29 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=56.1
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeecc----CCC--eEEEEEEcCCCc--cceEEEEeCCccchhhHhccCCCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----QSS--VTFIEVNDGSCL--SNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~----~g~--~~Fv~lrD~~~~--~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
+.|+++.+ ..++.|.|.|=|..... .|+ .+-+.|.|.++. ..|.|.+-.... +.+.. +..|
T Consensus 4 ~~i~~~~~-------~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~--~~LP~--v~~G 72 (138)
T cd04497 4 TPLSSALK-------ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE--ESLPI--VKVG 72 (138)
T ss_pred EeHHHHHh-------ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh--hhCCC--CCCC
Confidence 45666654 36778899999888753 232 455678898762 457776554421 23445 7899
Q ss_pred cEEEEEeeEeecCCCC-ceEEEE-EeEEEEEecCCC
Q 012612 84 ASIWIQGNVVPSQGSK-QKVELK-VNKIVLVGKSDP 117 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~-~~~El~-~~~i~ils~~~~ 117 (460)
|+|.+.+.-...-.+. ..+.-. ...+.+......
T Consensus 73 DVIll~~~kv~~~~g~~~~~~~~~~ss~avf~~~~~ 108 (138)
T cd04497 73 DIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDDG 108 (138)
T ss_pred CEEEEEEEEEEEECCceEEEECCCceeEEEEcCCCC
Confidence 9999998655543331 111111 344666666543
No 268
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=28.48 E-value=70 Score=23.28 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=18.1
Q ss_pred HHcCCCcccH-HHHHHHHhcCCCCC
Q 012612 402 DELKLNRDSY-WWYLDLRHYGSVPH 425 (460)
Q Consensus 402 ~~~~~~~~~~-~~yl~~~~~G~pp~ 425 (460)
+.+|+.+... -|...+.++|.||.
T Consensus 15 ~ALG~~~~~pPPWl~~Mq~~G~PPs 39 (54)
T smart00581 15 EALGLPPGQPPPWLYRMRRLGYPPG 39 (54)
T ss_pred HHcCCCCCCCChHHHHHHHHCCCCC
Confidence 4567765543 78999999999985
No 269
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.31 E-value=2.6e+02 Score=21.45 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=32.2
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc---hhhH-hccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~---~~~~-~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...| +|++|-++ ++..+...... +... .. ++.||.|.|.
T Consensus 17 i~~g~V~~v~~~G--~fv~l~~~-----~~g~v~~~el~~~~~~~~~~~--~~~Gd~v~vk 68 (83)
T cd04461 17 VVHGYVRNITPYG--VFVEFLGG-----LTGLAPKSYISDEFVTDPSFG--FKKGQSVTAK 68 (83)
T ss_pred EEEEEEEEEeece--EEEEcCCC-----CEEEEEHHHCCcccccCHHHh--cCCCCEEEEE
Confidence 5679999999877 89998643 46777654321 1112 23 8889988886
No 270
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.18 E-value=2.5e+02 Score=20.79 Aligned_cols=49 Identities=6% Similarity=0.139 Sum_probs=31.5
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc--chhh-HhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GYDQ-VKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~--~~~~-~~~~~l~~g~~V~V~ 89 (460)
.+.|.|..+...| +|+.|.++ ++.++..... ++.. .. ..++.||.|.+.
T Consensus 6 iv~g~V~~v~~~g--i~v~l~~~-----~~g~v~~s~l~~~~~~~~~-~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY--VLVQLGNK-----VTGPSFITDALDDYSEALP-YKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe--EEEEeCCC-----cEEEEEhhhccCccccccc-cccCCCCEEEEE
Confidence 5789999887665 88998653 5677765431 2211 11 137889988875
No 271
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=27.98 E-value=1.7e+02 Score=25.16 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=40.5
Q ss_pred eeeccccCCccCCCCCCCC--EEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 12 LKIVDVKGGPNEGLDRVGL--MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~--~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
..++||.... +.... -|--.|++.+..+..++.=.-+-|.+|.-++||.-+.. .++++||+|..+
T Consensus 5 i~ikdi~P~~----kN~~v~fIvl~~g~~tkTkdg~~v~~~kVaD~TgsI~isvW~e~~---------~~~~PGDIirLt 71 (134)
T KOG3416|consen 5 IFIKDIKPGL----KNINVTFIVLEYGRATKTKDGHEVRSCKVADETGSINISVWDEEG---------CLIQPGDIIRLT 71 (134)
T ss_pred hhHhhcChhh----hcceEEEEEEeeceeeeccCCCEEEEEEEecccceEEEEEecCcC---------cccCCccEEEec
Confidence 4577777642 12222 23346766666555566666678998765566653221 139999999998
Q ss_pred ee
Q 012612 90 GN 91 (460)
Q Consensus 90 G~ 91 (460)
|=
T Consensus 72 ~G 73 (134)
T KOG3416|consen 72 GG 73 (134)
T ss_pred cc
Confidence 63
No 272
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=27.89 E-value=29 Score=37.65 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.7
Q ss_pred CcceeccHHHHHHHHcC
Q 012612 425 HAGFGLGFERLVQFATG 441 (460)
Q Consensus 425 ~~G~giGidRL~m~l~~ 441 (460)
|.||++|+|||++.|..
T Consensus 442 ~~Gfa~gieRli~~l~e 458 (563)
T TIGR00418 442 HRAILGSIERFIAILLE 458 (563)
T ss_pred EeeccCcHHHHHHHHHH
Confidence 46999999999998854
No 273
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=27.47 E-value=50 Score=31.71 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=41.6
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 448 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv 448 (460)
.+...+|+.++|+ ||.- ..|-++. .|++. -|-++-+--|+|||.|.+-|.+||-|+
T Consensus 126 awGlGWEVWldGM-EvTQ-----FTYFQQv-----GGiec-------------~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 126 AWGLGWEVWLDGM-EVTQ-----FTYFQQV-----GGLEC-------------KPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred ccccceeEEEcCe-eeee-----eehhhhh-----CCeec-------------cceeeeeehhHHHHHHHHhCccceeEE
Confidence 3456799999998 8852 1222211 23332 244566788999999999999999998
Q ss_pred ccccC
Q 012612 449 IPFPR 453 (460)
Q Consensus 449 ~~FPr 453 (460)
..=..
T Consensus 182 ~W~~~ 186 (298)
T COG0752 182 EWNDG 186 (298)
T ss_pred eecCC
Confidence 75443
No 274
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=27.28 E-value=58 Score=33.97 Aligned_cols=50 Identities=12% Similarity=0.342 Sum_probs=32.0
Q ss_pred eeecccCC--ce-eeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 373 AMDMLVPR--IG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 373 ~fDl~~~G--~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
-|+.+.++ .+ .|++|+. |+.+...+...+. -.|..||++|+|||+..+..
T Consensus 279 vFe~~~~~~~~~~~i~~GGR----YD~L~~~f~~~~~---------------~~pAvGfa~~~~~l~~~l~~ 331 (423)
T PRK12420 279 VYEIFLKDGSITSSIGSGGR----YDNIIGAFRGDDM---------------NYPTVGISFGLDVIYTALSQ 331 (423)
T ss_pred EEEEEecCCCccccccCCcc----HHHHHHHhCCCCC---------------CCCceeEEEcHHHHHHHHHh
Confidence 47888764 22 5888873 5555443321100 23789999999999988864
No 275
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=27.10 E-value=1.4e+02 Score=27.82 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=37.5
Q ss_pred EEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeec
Q 012612 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (460)
Q Consensus 31 ~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~ 95 (460)
.-++.|||..+-. +..++.-.... +++|++++... + ++.||.|.|+|.+.+.
T Consensus 39 ~~tiEGrVvEV~~--~~i~iesk~yn--~~v~i~~d~~~-------n--vKVGD~VKaTG~m~rn 90 (213)
T PRK06763 39 FSTIEGRVVEVDN--GVIVIKSKQYE--EPVSVYIDSLS-------N--VKVGDEVKATGSMMRN 90 (213)
T ss_pred cceeeeEEEEEeC--CEEEEEeccCC--CceEEEecCCC-------C--cccCcEEEEchHHHHh
Confidence 3489999987763 44555555444 57999987642 4 8999999999987654
No 276
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=26.97 E-value=28 Score=40.07 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHH-HHHHHhcC-----CCceEEEecc
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQL-NAETYATA-----LSNVYTFGPT 225 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql-~l~l~~~g-----~~rvfeI~~~ 225 (460)
++|-+.+-+||.++|-.-|..=-+.+ ....+++|+.|.-. ++.....| ..|+-...||
T Consensus 62 ~eiR~~Fl~FF~~~gH~~v~s~pvvp----------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~C 125 (900)
T PRK13902 62 KEMREKFLSFFEKHGHTRIERYPVVA----------------RWRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPC 125 (900)
T ss_pred HHHHHHHHHHHHhCCCEEcCCcCcCC----------------CCCCCeeeeecchhhhhHHhcCCCCCCCCCCceecccc
Confidence 45666777899999966664222211 11122555555533 34454433 4788999999
Q ss_pred cccCCC----CCCCCCCccceee
Q 012612 226 FRAENS----NTSRHLAEFWMIE 244 (460)
Q Consensus 226 FR~E~~----~~~rHl~EFt~lE 244 (460)
.|..+. .|.||+.=|.||=
T Consensus 126 iR~nDldnVG~t~rH~T~FEMlG 148 (900)
T PRK13902 126 IRLNDIDNVGRTGRHLTSFEMMA 148 (900)
T ss_pred cchhhhhhccccCCchhhhhhcc
Confidence 997544 3689987777754
No 277
>KOG1894 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=74 Score=31.95 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=47.0
Q ss_pred HHHHHhhhhCCceeecCceeecCCC----CCCCCceeeeccccCCc---cccccccHHHHHHHHhcCC-------CceEE
Q 012612 156 YATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLDFFEK---PAFLTVSGQLNAETYATAL-------SNVYT 221 (460)
Q Consensus 156 ~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~~---~~~L~~Spql~l~l~~~g~-------~rvfe 221 (460)
.+.++-|..+. |+.||.|+...+ ..++..|.|-...+++. ++.|.+|+-+++++.--+| ..|++
T Consensus 111 ~a~~el~r~kd--e~ntp~l~qr~s~s~~~~~~n~qsIy~~~~~D~~~~~laL~i~~i~~k~~krv~f~d~a~e~~~v~s 188 (412)
T KOG1894|consen 111 YALQELFRLKD--ESNTPVLQQRLSASAFGAIANIQSIYNQGFYDQEDVVLALPISKIFFKDLKRVGFDDNAPEQLEVVS 188 (412)
T ss_pred HHHHHHHHHhh--ccCChHHhhcccccchhhcccceeeccCCccCCCCccccccHhhhhhhhhhhhcCCccchhhheeec
Confidence 34445554444 999999986332 34455666654466766 8899999999987655554 34554
Q ss_pred ---EecccccCC
Q 012612 222 ---FGPTFRAEN 230 (460)
Q Consensus 222 ---I~~~FR~E~ 230 (460)
.++.|=||.
T Consensus 189 ~~tl~~l~~ne~ 200 (412)
T KOG1894|consen 189 GRTLSNLFYNET 200 (412)
T ss_pred cccccccccCcc
Confidence 556666653
No 278
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=26.54 E-value=2.4e+02 Score=22.33 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=32.8
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch---hh----HhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY---DQ----VKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~---~~----~~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++-..-.-+|++|.++ ....+..+...+ .. -.. ++.||.|.|+
T Consensus 10 iy~g~V~~i~~~~~GaFV~l~~g-----~~Gllh~seis~~~~~~v~~~~~~--~~~Gd~v~Vq 66 (88)
T cd04453 10 IYLGRVKKIVPGLQAAFVDIGLG-----KNGFLHLSDILPAYFKKHKKIAKL--LKEGQEILVQ 66 (88)
T ss_pred EEEEEEEEeccCCcEEEEEeCCC-----CEEEEEhHHcCchhccccCCHHHc--CCCCCEEEEE
Confidence 57899999987533599999764 245555443222 11 123 8889998887
No 279
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=26.43 E-value=1.5e+02 Score=21.98 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=32.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchh----hHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~----~~~~~~l~~g~~V~V~ 89 (460)
.+.|+|.++...| +|++|.++ +...+..+..... .-.. +..|+.|.|.
T Consensus 7 iv~g~V~~v~~~g--~~V~l~~~-----~~g~ip~~~l~~~~~~~~~~~--~~~G~~v~v~ 58 (74)
T PF00575_consen 7 IVEGKVTSVEDFG--VFVDLGNG-----IEGFIPISELSDDRIDDPSEV--YKIGQTVRVK 58 (74)
T ss_dssp EEEEEEEEEETTE--EEEEESTS-----SEEEEEGGGSSSSEESSSHGT--CETTCEEEEE
T ss_pred EEEEEEEEEECCE--EEEEECCc-----EEEEEEeehhcCccccccccc--cCCCCEEEEE
Confidence 5799999998755 89999833 4677776543211 1234 8889888765
No 280
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=25.89 E-value=1e+02 Score=28.19 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=26.3
Q ss_pred CCCCcEEEEEeeEeecCC----CC--ceEEEEEe---EEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQG----SK--QKVELKVN---KIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~~----~~--~~~El~~~---~i~ils~~ 115 (460)
|+.||.|.|+|.+....= ++ ..+||.+. ++++|++.
T Consensus 72 L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 72 LRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred cCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 999999999999987531 11 25777766 67777654
No 281
>PLN02530 histidine-tRNA ligase
Probab=25.29 E-value=62 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=14.9
Q ss_pred CCCcceeccHHHHHHHHc
Q 012612 423 VPHAGFGLGFERLVQFAT 440 (460)
Q Consensus 423 pp~~G~giGidRL~m~l~ 440 (460)
.|..|||+|++||+.++-
T Consensus 373 ~pAvGFa~g~~~l~~~l~ 390 (487)
T PLN02530 373 TPACGFGFGDAVIVELLK 390 (487)
T ss_pred CCeeEEEEhHHHHHHHHH
Confidence 378999999999887764
No 282
>PRK08582 hypothetical protein; Provisional
Probab=24.57 E-value=2e+02 Score=25.07 Aligned_cols=64 Identities=17% Similarity=0.383 Sum_probs=37.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc--ch-hhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY-DQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~--~~-~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
.+.|.|..+...| +||.|-++ +..++..+.. .+ ..+ .. ++.||.|.|. |..... .+.+.|.+..
T Consensus 8 iv~G~V~~I~~fG--~fV~L~~~-----~~GlVhiSels~~~v~~~~~~--l~vGD~Vkvk--V~~id~-~gkI~LSlk~ 75 (139)
T PRK08582 8 KLQGKVTGITNFG--AFVELPEG-----KTGLVHISEVADNYVKDINDH--LKVGDEVEVK--VLNVED-DGKIGLSIKK 75 (139)
T ss_pred EEEEEEEEEECCe--EEEEECCC-----CEEEEEeeccCcccccccccc--cCCCCEEEEE--EEEECC-CCcEEEEEEe
Confidence 4899999999887 89999654 2344443321 11 112 23 8999999876 332221 1356665543
No 283
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=24.44 E-value=2.6e+02 Score=28.12 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=35.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhh---HhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ---VKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~---~~~~~l~~g~~V~V~ 89 (460)
.|.|.|.++-..| +||+|-...+ +..++..+...+.. +++ .++.|+-|.|.
T Consensus 20 vV~g~V~~I~d~G--afV~L~EY~g---vEGlIhiSElS~~ri~~i~d-~vkvGd~v~vk 73 (319)
T PTZ00248 20 LVMVKVVRITEMG--AYVSLLEYDD---IEGMILMSELSKRRIRSINK-LIRVGRHEVVV 73 (319)
T ss_pred EEEEEEEEEeCCe--EEEEecCCCC---cEEEEEHHHhcccccCCHHH-hcCCCCEEEEE
Confidence 5789999999888 8999953222 68888765543322 332 38999988876
No 284
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=24.10 E-value=2.9e+02 Score=20.19 Aligned_cols=65 Identities=14% Similarity=0.326 Sum_probs=37.2
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc--c-hhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--G-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~--~-~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
.+.|.|.++...| +|++|.++ +..++..+.. . +..... .++.||.|.+. +.......+.+.+...
T Consensus 3 ~v~g~V~~v~~~g--~~v~l~~~-----~~g~i~~~~~~~~~~~~~~~-~~~~Gd~v~~~--v~~~d~~~~~i~ls~k 70 (73)
T cd05691 3 IVTGKVTEVDAKG--ATVKLGDG-----VEGFLRAAELSRDRVEDATE-RFKVGDEVEAK--ITNVDRKNRKISLSIK 70 (73)
T ss_pred EEEEEEEEEECCe--EEEEeCCC-----CEEEEEHHHCCCccccCHHH-ccCCCCEEEEE--EEEEeCCCCEEEEEEE
Confidence 3689998888655 88988743 4566654321 1 112221 27999998876 3333222234555443
No 285
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=24.03 E-value=2e+02 Score=24.76 Aligned_cols=66 Identities=14% Similarity=0.313 Sum_probs=39.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
.+.|+|..+-..| +||.|-.++.. - |-++.=..+|-. +.. .|..|+-|.|. .+..... +.++|.+.
T Consensus 8 ~l~GkItgI~~yG--AFV~l~~g~tG-L--VHISEIa~~fVkdI~d-~L~vG~eV~vK-Vl~ide~--GKisLSIr 74 (129)
T COG1098 8 KLKGKITGITPYG--AFVELEGGKTG-L--VHISEIADGFVKDIHD-HLKVGQEVKVK-VLDIDEN--GKISLSIR 74 (129)
T ss_pred eEEEEEEeeEecc--eEEEecCCCcc-e--EEehHhhhhhHHhHHH-HhcCCCEEEEE-EEeeccC--CCcceehH
Confidence 5889999999988 89999876531 1 222221123422 432 49999998887 2222222 34666543
No 286
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=23.89 E-value=83 Score=25.71 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=34.2
Q ss_pred EEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEE
Q 012612 50 IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (460)
Q Consensus 50 v~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~il 112 (460)
+.|+||.. .+|.++......+ +.++.|+.|++|.+.=....+-.+ .--|.+.+++++
T Consensus 40 i~lSDG~~--~~~amLatqln~~--v~~g~l~~~sIirl~~y~~~~i~~--k~viiIldlevl 96 (97)
T cd04477 40 ILLSDGVY--YVQAMLATQLNPL--VESGQLQRGSIIRLKRFICNVIKG--KRILIILDLEVV 96 (97)
T ss_pred EEEEChhH--HHHHHHhhhhhhH--HhcCCccCCcEEEECeEEEEEecC--cEEEEEEeeEEe
Confidence 66899974 5788887654222 334459999999995333222112 224555566665
No 287
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=23.49 E-value=2.8e+02 Score=33.00 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=52.3
Q ss_pred CEEEEEEEEeeecc----CCC-eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 012612 30 LMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (460)
Q Consensus 30 ~~V~v~GwV~~~R~----~g~-~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El 104 (460)
..|+|.|.|-.+-. +|+ +.=+.+.|++..-.+|.....+ .+-+.+.. |+.|+.|.|+|.+....- .+++.+
T Consensus 240 ~~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~-ed~~~~~~--ik~g~wvk~~g~v~~d~f-~~~l~m 315 (1444)
T COG2176 240 TRVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDE-EDEKKFDG--IKKGMWVKARGNVQLDTF-TRDLTM 315 (1444)
T ss_pred cceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhcccc-ccHHHHhh--cccCcEEEEEEEEEeccc-ccceEE
Confidence 44999999977743 343 4445678888654455554422 22334566 999999999999988743 346777
Q ss_pred EEeEEEEEe
Q 012612 105 KVNKIVLVG 113 (460)
Q Consensus 105 ~~~~i~ils 113 (460)
.+.+|.-+.
T Consensus 316 ~i~~I~ei~ 324 (1444)
T COG2176 316 IINDINEIE 324 (1444)
T ss_pred Ehhhhhhhh
Confidence 776665444
No 288
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=23.43 E-value=1.8e+02 Score=21.60 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcC
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDG 55 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~ 55 (460)
.+.|+|..+...| +|+.|.++
T Consensus 6 ~~~g~V~~i~~~G--~fv~l~~~ 26 (72)
T cd05689 6 RLFGKVTNLTDYG--CFVELEEG 26 (72)
T ss_pred EEEEEEEEEEeeE--EEEEcCCC
Confidence 5899999999887 89999653
No 289
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=23.04 E-value=2.8e+02 Score=27.01 Aligned_cols=67 Identities=12% Similarity=0.300 Sum_probs=41.0
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc---hhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
.|.|.|.++...| +|+.|.+..+ ++.++..+... +..+.+ .++.||.|.|. |.......+.+.|...
T Consensus 11 iV~G~V~~I~~~G--~fV~L~e~~g---ieGlI~iSEls~~~i~~i~~-~~kvGd~V~vk--Vi~VD~~k~~I~LSlK 80 (262)
T PRK03987 11 LVVGTVKEVKDFG--AFVTLDEYPG---KEGFIHISEVASGWVKNIRD-HVKEGQKVVCK--VIRVDPRKGHIDLSLK 80 (262)
T ss_pred EEEEEEEEEECCE--EEEEECCCCC---cEEEEEHHHcCcccccCHHH-hCCCCCEEEEE--EEEEecccCeEEEEEE
Confidence 5789999998877 8999987432 57777654321 111221 38999999886 3332222234555544
No 290
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=22.76 E-value=77 Score=22.22 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 012612 148 ARVRNALAYATHKFFQ 163 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~ 163 (460)
-+.|+.+++++|+|+-
T Consensus 18 ~kmR~dvissvrnFli 33 (51)
T PF15178_consen 18 RKMREDVISSVRNFLI 33 (51)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999999974
No 291
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=22.57 E-value=43 Score=34.23 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=35.9
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l 266 (460)
+.|.|-+|||.|.-.+..||--+..--+-..-. +.++-..++|.|+++.
T Consensus 209 klFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf 259 (536)
T COG2024 209 KLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 (536)
T ss_pred eeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHh
Confidence 679999999999776778886665554443322 4667788899998875
No 292
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=22.43 E-value=70 Score=32.90 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=29.5
Q ss_pred eeecccCCc--eeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHH
Q 012612 373 AMDMLVPRI--GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 438 (460)
Q Consensus 373 ~fDl~~~G~--~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~ 438 (460)
-|+++.+|. +.|++|+ +|+.|.+.+-. + .-.|..||++|+|||+.+
T Consensus 323 VFe~~~~~~~~~~I~~GG----RYD~Li~~fg~-~---------------~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 323 VFEIRAAGNGDPPLAGGG----RYDGLLTRLGA-G---------------EPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred EEEEEECCCCCCcccCCc----CHHHHHHHhCC-C---------------CCCCeeEEEEcHHHHHhh
Confidence 477777654 3688887 45555554421 0 023788999999998653
No 293
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=22.28 E-value=2.3e+02 Score=20.75 Aligned_cols=48 Identities=10% Similarity=0.202 Sum_probs=30.7
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchh---hH-hccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD---QV-KSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~---~~-~~~~l~~g~~V~V~ 89 (460)
.|.|.|.++... -+|++|..+ ...++........ .. .. +++||.|.+.
T Consensus 3 iv~g~V~~i~~~--~~~v~l~~~-----~~g~l~~~e~~~~~~~~~~~~--~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDD--EVLVDIGYK-----SEGIIPISEFSDDPIENGEDE--VKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCC--EEEEEeCCC-----ceEEEEHHHhCccccCCHhHc--CCCCCEEEEE
Confidence 478999999865 489999432 4666665432111 11 23 8899998876
No 294
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.24 E-value=3e+02 Score=20.35 Aligned_cols=48 Identities=10% Similarity=0.248 Sum_probs=30.0
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc--ch----hhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE--GY----DQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~--~~----~~~~~~~l~~g~~V~V~ 89 (460)
.|.|.|.++...| +|+.|-++ ++..+..+.. .| ..... ++.||.|.+.
T Consensus 3 iV~g~V~~i~~~g--i~v~l~~~-----i~g~i~~~~i~~~~~~~~~~~~~--~~~Gd~i~~k 56 (70)
T cd05702 3 LVKAKVKSVKPTQ--LNVQLADN-----VHGRIHVSEVFDEWPDGKNPLSK--FKIGQKIKAR 56 (70)
T ss_pred EEEEEEEEEECCc--EEEEeCCC-----cEEEEEHHHhccccccccChhHh--CCCCCEEEEE
Confidence 4789999988755 88888543 4555554321 12 11234 7888888765
No 295
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=21.84 E-value=55 Score=31.30 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=17.2
Q ss_pred CC-CCcceeccHHHHHHHHcCC
Q 012612 422 SV-PHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 422 ~p-p~~G~giGidRL~m~l~~~ 442 (460)
+| ++-.-|+|+|||++++-|.
T Consensus 211 Lp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 211 LPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCCeeeCCcCHHHHHHHHcCC
Confidence 44 6778899999999998663
No 296
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=21.52 E-value=79 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCC
Q 012612 397 LEGRLDELKLNRDSYWWYLDLRHYGSVPH 425 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~yl~~~~~G~pp~ 425 (460)
++..+..+...+.-+.-|++.+|-|.||.
T Consensus 3 iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e 31 (45)
T PF03790_consen 3 IKAKIASHPLYPRLLAAYIDCQKVGAPPE 31 (45)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhcCCCHH
Confidence 34445555565655678999999999984
No 297
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=21.19 E-value=5.2e+02 Score=21.99 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=53.5
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEee
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (460)
+.+.|++. +....|+.|++-|++++.=...+++=+.-...++ .-|+.++.+.. +.+ . .+.|+...+-|.
T Consensus 8 ~~l~Evs~----~~~~~g~svR~~GrL~~yD~~~~~a~l~~~~~~~--~~~l~V~t~~l--~~~-~--~~~gslyq~iGE 76 (118)
T PF15490_consen 8 VFLWEVSS----GFVPEGKSVRTFGRLQSYDVATSRATLTAQHESD--QHSLKVDTKLL--EPF-Q--ARVGSLYQFIGE 76 (118)
T ss_pred EehHHhcC----ccccCCCeEEEEEEEEEEeccCCEEEEEeeccCC--CcEEEEEeeEc--ccc-c--cCCCCEEEEEEE
Confidence 45667733 2246789999999999997766655442232222 24666665431 111 2 679999999999
Q ss_pred EeecCCCCceEEEEEeEEE
Q 012612 92 VVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 92 v~~~~~~~~~~El~~~~i~ 110 (460)
+...+.+ ++..|.+.=.+
T Consensus 77 l~~~~~~-~~~~L~ARV~r 94 (118)
T PF15490_consen 77 LEHQPQD-GGIVLKARVLR 94 (118)
T ss_pred EEEEcCC-CcEEEEEEEEE
Confidence 9887222 24555554333
No 298
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=21.12 E-value=51 Score=37.93 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccH-HHHHHHHh----cCCCceEEEeccc
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG-QLNAETYA----TALSNVYTFGPTF 226 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Sp-ql~l~l~~----~g~~rvfeI~~~F 226 (460)
++|.+.+-+||.++|-.-|.+--|.+-. +.+++++.|. ..+|.... ....|+=...+|.
T Consensus 5 ~eiR~~fl~fF~~~~H~~v~s~~lvp~~----------------d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCi 68 (865)
T PRK00252 5 AEIRQKFLDFFESKGHTVVPSASLVPKN----------------DPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCI 68 (865)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcCCCC----------------CCCeeeeccchhhhhHHhcCCCCCCCCCcccccccc
Confidence 4677788899999998877654444411 1111222222 22222222 1247888899999
Q ss_pred ccCCC----CCCCCCCccceeeeeecCCCH--HHHHHHHHHHHHH
Q 012612 227 RAENS----NTSRHLAEFWMIEPELAFADL--KDDMACATAYLQY 265 (460)
Q Consensus 227 R~E~~----~~~rHl~EFt~lE~e~~~~~~--~~~~~~~e~li~~ 265 (460)
|..+. .|.||..=|.||=- .+|.|| ++.++.+=+|+..
T Consensus 69 R~nDld~VG~t~rHhTfFEMlGn-~sfgdYfK~eai~~awe~lt~ 112 (865)
T PRK00252 69 RTNDLENVGYTARHHTFFEMLGN-FSFGDYFKEEAIEWAWELLTS 112 (865)
T ss_pred cccchhhccCCCCchHHHHHhcc-cchhhhhHHHHHHHHHHHHHH
Confidence 97543 47899777777542 245564 4555555555443
No 299
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=21.02 E-value=3.4e+02 Score=19.75 Aligned_cols=51 Identities=12% Similarity=0.257 Sum_probs=32.5
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...|..+-+.+.-+.+ ..+...++.+. ...+ . |++|+-|.+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~-~~l~a~i~~~~--~~~l-~--l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG-TKLTAVITLES--VAEL-G--LKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEecHHH--HhhC-C--CCCCCEEEEE
Confidence 6899999998877766666654332 24666555421 1111 3 8899988765
Done!