Query 012612
Match_columns 460
No_of_seqs 195 out of 1393
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 12:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 3E-106 1E-110 831.8 37.4 424 9-459 2-437 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 1E-104 4E-109 823.8 33.8 425 10-459 18-455 (456)
3 2xgt_A Asparaginyl-tRNA synthe 100.0 1E-102 4E-107 807.1 36.2 421 13-459 2-434 (435)
4 1wyd_A Hypothetical aspartyl-t 100.0 1E-102 4E-107 804.9 34.5 423 10-460 3-429 (429)
5 3i7f_A Aspartyl-tRNA synthetas 100.0 2E-101 7E-106 807.9 34.2 426 10-459 49-547 (548)
6 1x54_A Asparaginyl-tRNA synthe 100.0 4E-101 1E-105 795.1 34.6 425 10-460 3-434 (434)
7 1n9w_A Aspartyl-tRNA synthetas 100.0 4E-101 1E-105 791.3 31.3 412 11-460 2-422 (422)
8 3bju_A Lysyl-tRNA synthetase; 100.0 7E-100 2E-104 799.8 36.6 440 2-457 25-508 (521)
9 4ex5_A Lysine--tRNA ligase; st 100.0 1.1E-99 4E-104 794.0 34.0 429 3-456 56-527 (529)
10 1e1o_A Lysyl-tRNA synthetase, 100.0 1.8E-99 6E-104 792.7 35.2 431 2-457 33-503 (504)
11 3a74_A Lysyl-tRNA synthetase; 100.0 5.5E-99 2E-103 788.1 34.8 430 2-456 25-492 (493)
12 1eov_A ASPRS, aspartyl-tRNA sy 100.0 1.5E-98 5E-103 785.2 35.1 430 10-459 22-486 (487)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 4.6E-97 2E-101 786.4 39.5 413 10-459 3-556 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 3.3E-96 1E-100 782.2 39.3 434 10-459 2-562 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 1.8E-86 6.2E-91 703.2 33.9 438 1-457 1-571 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 3.5E-75 1.2E-79 583.7 22.4 297 138-455 27-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 4E-68 1.4E-72 523.8 22.7 278 133-458 1-291 (294)
18 12as_A Asparagine synthetase; 99.9 1.2E-24 4.1E-29 208.9 17.2 278 146-450 3-315 (330)
19 3qtc_A Pyrrolysyl-tRNA synthet 99.9 2E-25 6.8E-30 219.5 3.6 152 96-251 21-189 (290)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.7 2.4E-17 8.1E-22 161.3 12.2 188 151-453 73-278 (288)
21 1b7y_A Phers, protein (phenyla 99.6 4.1E-15 1.4E-19 148.6 13.7 114 151-266 103-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.5 4.9E-14 1.7E-18 138.3 11.3 116 150-266 54-183 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.4 6.7E-13 2.3E-17 131.1 10.1 106 152-266 110-234 (327)
24 3l4g_A Phenylalanyl-tRNA synth 99.1 2.4E-10 8.3E-15 118.5 12.5 99 149-248 225-378 (508)
25 3cmq_A Phenylalanyl-tRNA synth 98.5 2E-07 6.7E-12 95.3 9.3 95 152-249 51-164 (415)
26 2du3_A O-phosphoseryl-tRNA syn 98.4 1.6E-06 5.4E-11 90.5 12.5 47 218-264 207-255 (534)
27 2du7_A O-phosphoseryl-tRNA syn 98.3 5.9E-06 2E-10 86.1 14.3 44 218-261 219-264 (549)
28 2i4l_A Proline-tRNA ligase; al 98.2 3E-06 1E-10 88.0 9.1 117 144-262 63-197 (458)
29 1evl_A Threonyl-tRNA synthetas 98.2 2.4E-06 8.2E-11 87.1 7.5 115 145-264 27-161 (401)
30 2dq3_A Seryl-tRNA synthetase; 98.1 2.5E-06 8.7E-11 87.5 7.2 117 144-266 168-306 (425)
31 1z7m_A ATP phosphoribosyltrans 98.1 1.4E-05 4.9E-10 79.7 11.7 104 145-251 33-151 (344)
32 3uh0_A Threonyl-tRNA synthetas 98.1 6.1E-06 2.1E-10 85.6 8.3 123 144-268 60-203 (460)
33 2odr_B Phosphoseryl-tRNA synth 98.0 1.6E-05 5.3E-10 83.7 10.6 64 200-263 201-273 (648)
34 2odr_A Phosphoseryl-tRNA synth 98.0 1.7E-05 5.8E-10 83.5 10.6 64 200-263 201-273 (665)
35 1qe0_A Histidyl-tRNA synthetas 98.0 4.5E-06 1.5E-10 85.5 6.3 103 146-251 14-135 (420)
36 2odr_D Phosphoseryl-tRNA synth 98.0 1.8E-05 6.1E-10 83.5 10.6 64 200-263 201-273 (685)
37 1nyr_A Threonyl-tRNA synthetas 98.0 1E-05 3.4E-10 87.6 8.8 117 144-264 267-404 (645)
38 2odr_C Phosphoseryl-tRNA synth 98.0 2E-05 6.9E-10 83.3 10.5 64 200-263 201-273 (701)
39 1hc7_A Prolyl-tRNA synthetase; 98.0 2.2E-05 7.7E-10 81.7 10.6 117 145-262 41-178 (477)
40 2j3l_A Prolyl-tRNA synthetase; 98.0 2.4E-05 8.3E-10 83.4 10.9 114 144-261 43-176 (572)
41 1wu7_A Histidyl-tRNA synthetas 98.0 3E-05 1E-09 79.8 11.1 103 146-251 18-133 (434)
42 3lss_A Seryl-tRNA synthetase; 97.9 9.4E-06 3.2E-10 83.9 6.3 118 145-266 205-346 (484)
43 1h4v_B Histidyl-tRNA synthetas 97.9 3.4E-05 1.2E-09 79.0 10.2 103 146-251 15-135 (421)
44 2dq0_A Seryl-tRNA synthetase; 97.9 1E-05 3.4E-10 83.7 5.9 121 145-266 190-327 (455)
45 1nj8_A Proline-tRNA synthetase 97.9 5.5E-05 1.9E-09 78.4 11.1 119 145-264 35-176 (459)
46 3qne_A Seryl-tRNA synthetase, 97.9 1.4E-05 4.6E-10 82.7 6.3 118 145-266 182-323 (485)
47 1ses_A Seryl-tRNA synthetase; 97.9 4E-05 1.4E-09 78.4 9.8 117 145-266 163-302 (421)
48 1htt_A Histidyl-tRNA synthetas 97.9 3.4E-05 1.2E-09 79.1 9.2 103 146-251 16-135 (423)
49 4e51_A Histidine--tRNA ligase; 97.8 4.1E-05 1.4E-09 79.6 9.6 103 145-250 43-163 (467)
50 1nj1_A PROR, proline-tRNA synt 97.8 4.7E-05 1.6E-09 79.7 9.9 118 145-264 68-208 (501)
51 3rac_A Histidine-tRNA ligase; 97.8 5.1E-05 1.7E-09 76.5 9.6 101 147-251 36-157 (373)
52 3od1_A ATP phosphoribosyltrans 97.8 6.5E-05 2.2E-09 76.4 10.1 102 146-251 22-137 (400)
53 3net_A Histidyl-tRNA synthetas 97.8 4.4E-05 1.5E-09 79.3 9.0 118 146-266 24-175 (465)
54 3lc0_A Histidyl-tRNA synthetas 97.7 0.00014 4.8E-09 75.2 10.7 101 146-250 41-156 (456)
55 3ial_A Prolyl-tRNA synthetase; 97.7 9E-05 3.1E-09 77.5 9.0 123 144-266 51-194 (518)
56 4hvc_A Bifunctional glutamate/ 97.6 0.00012 4E-09 76.8 9.4 120 145-265 58-199 (519)
57 1qf6_A THRRS, threonyl-tRNA sy 97.6 5.8E-05 2E-09 81.5 7.2 117 143-264 266-402 (642)
58 1wle_A Seryl-tRNA synthetase; 97.6 0.00031 1.1E-08 73.1 12.3 121 144-266 215-358 (501)
59 4g84_A Histidine--tRNA ligase, 97.6 0.00025 8.5E-09 73.4 11.6 102 145-249 25-138 (464)
60 3a32_A Probable threonyl-tRNA 97.6 5.5E-05 1.9E-09 78.7 6.2 113 146-263 47-182 (471)
61 3err_A Fusion protein of micro 97.6 0.00011 3.7E-09 77.3 7.6 117 144-266 271-411 (536)
62 3vbb_A Seryl-tRNA synthetase, 97.5 0.00016 5.5E-09 75.3 8.6 119 145-265 198-347 (522)
63 4g85_A Histidine-tRNA ligase, 97.5 0.00035 1.2E-08 73.5 10.4 103 144-249 77-191 (517)
64 2cja_A Seryl-tRNA synthetase; 97.4 6.6E-05 2.3E-09 78.5 3.1 124 145-270 228-400 (522)
65 1ati_A Glycyl-tRNA synthetase; 97.2 0.0006 2E-08 71.4 8.2 34 146-179 37-72 (505)
66 1usy_A ATP phosphoribosyltrans 97.1 0.0013 4.3E-08 63.4 8.2 89 154-251 6-101 (275)
67 3mf2_A BLL0957 protein; aminoa 97.0 0.00045 1.5E-08 68.0 4.6 121 145-267 61-218 (346)
68 3ikl_A DNA polymerase subunit 97.0 0.0019 6.5E-08 66.3 9.1 109 146-266 102-227 (459)
69 2zt5_A Glycyl-tRNA synthetase; 96.8 0.0029 1E-07 68.6 8.9 33 145-177 98-131 (693)
70 3e0e_A Replication protein A; 96.7 0.023 7.9E-07 45.5 11.9 85 12-116 3-97 (97)
71 3dm3_A Replication factor A; p 96.7 0.019 6.5E-07 46.8 11.3 89 10-117 4-102 (105)
72 3kdf_D Replication protein A 3 96.6 0.018 6.3E-07 48.8 11.1 97 12-114 9-111 (132)
73 3kf6_A Protein STN1; OB fold, 96.5 0.025 8.7E-07 49.6 11.6 81 28-114 46-128 (159)
74 4gop_B Putative uncharacterize 96.5 0.022 7.6E-07 48.6 11.0 97 10-113 10-115 (136)
75 1g5h_A Mitochondrial DNA polym 96.4 0.0049 1.7E-07 63.6 7.3 119 146-267 60-218 (454)
76 2k50_A Replication factor A re 96.0 0.03 1E-06 46.1 8.6 81 28-115 15-105 (115)
77 3l4g_B Phenylalanyl-tRNA synth 95.7 0.029 1E-06 59.7 9.7 112 151-265 393-521 (589)
78 2rhq_B Phenylalanyl-tRNA synth 95.7 0.05 1.7E-06 59.9 11.6 113 150-266 494-632 (795)
79 1nnx_A Protein YGIW; structura 95.7 0.033 1.1E-06 45.6 7.5 84 12-114 26-109 (109)
80 3ig2_A Phenylalanyl-tRNA synth 95.4 0.033 1.1E-06 51.3 7.4 113 152-266 7-151 (213)
81 3au7_A TIAS, putative uncharac 95.0 0.17 5.7E-06 50.8 11.6 77 28-115 283-362 (402)
82 2pi2_A Replication protein A 3 94.9 0.16 5.4E-06 48.5 11.0 99 10-114 47-151 (270)
83 2kbn_A Conserved protein; nucl 94.4 0.32 1.1E-05 39.7 10.1 87 13-118 7-97 (109)
84 3ica_A Phenylalanyl-tRNA synth 94.0 0.11 3.9E-06 47.6 7.4 113 152-266 7-151 (213)
85 2k75_A Uncharacterized protein 94.0 0.54 1.8E-05 38.1 10.6 88 12-122 4-100 (106)
86 3kf8_A Protein STN1; OB fold; 93.5 0.56 1.9E-05 43.0 10.8 84 28-115 84-185 (220)
87 1o7i_A SSB, SSO2364, single st 92.8 0.55 1.9E-05 38.7 9.0 84 13-116 4-97 (119)
88 3kdf_A Replication protein A 1 92.7 0.38 1.3E-05 40.1 7.8 71 27-115 20-90 (121)
89 1b7y_B Phers, protein (phenyla 91.2 0.91 3.1E-05 49.8 10.8 107 149-266 489-620 (785)
90 1ynx_A Replication factor-A pr 91.0 0.42 1.5E-05 39.2 6.2 92 11-116 4-110 (114)
91 4gop_A Putative uncharacterize 89.8 0.55 1.9E-05 38.6 5.8 67 27-107 16-82 (114)
92 3fhw_A Primosomal replication 88.9 1 3.4E-05 37.1 6.8 57 61-121 49-105 (115)
93 2hpi_A DNA polymerase III alph 87.0 0.59 2E-05 53.4 5.6 80 27-115 1040-1124(1220)
94 2pi2_E Replication protein A 1 85.5 4.5 0.00015 34.4 9.1 71 26-114 40-110 (142)
95 1j6q_A Cytochrome C maturation 82.5 9.5 0.00032 32.1 9.7 91 12-120 13-111 (136)
96 1sr3_A APO-CCME; OB fold, beta 82.0 10 0.00034 32.0 9.7 77 26-120 25-106 (136)
97 1jmc_A Protein (replication pr 80.2 3 0.0001 38.6 6.5 93 11-116 8-114 (246)
98 3k8a_A Putative primosomal rep 76.2 4.1 0.00014 32.6 5.3 47 61-112 55-101 (103)
99 3tqy_A Single-stranded DNA-bin 74.1 13 0.00043 32.1 8.3 51 61-115 58-115 (158)
100 2k52_A Uncharacterized protein 73.1 16 0.00055 27.3 7.8 48 33-89 8-55 (80)
101 3f1z_A Putative nucleic acid-b 71.3 22 0.00075 27.7 8.0 69 26-96 46-119 (133)
102 1txy_A Primosomal replication 70.2 10 0.00034 30.2 6.3 50 61-114 50-102 (104)
103 3f2b_A DNA-directed DNA polyme 69.6 33 0.0011 38.6 12.3 82 29-115 17-104 (1041)
104 3mxn_B RECQ-mediated genome in 65.1 32 0.0011 29.2 8.4 74 29-115 58-131 (150)
105 4gop_C Putative uncharacterize 64.3 8.3 0.00029 39.1 5.8 93 11-116 3-109 (444)
106 1wjj_A Hypothetical protein F2 63.8 54 0.0018 27.8 9.9 85 12-115 17-120 (145)
107 1v1q_A Primosomal replication 63.3 27 0.00094 29.2 7.9 52 61-115 67-120 (134)
108 3pco_B Phenylalanyl-tRNA synth 63.1 8.2 0.00028 42.3 5.8 110 154-266 494-628 (795)
109 2khj_A 30S ribosomal protein S 60.1 5.1 0.00018 32.1 2.7 79 1-89 1-85 (109)
110 3lc0_A Histidyl-tRNA synthetas 57.7 2.8 9.6E-05 42.9 0.9 19 423-441 333-351 (456)
111 2fxq_A Single-strand binding p 57.6 22 0.00075 33.2 7.1 82 30-115 129-230 (264)
112 3rac_A Histidine-tRNA ligase; 55.7 5.3 0.00018 39.6 2.5 46 373-440 318-364 (373)
113 1z7m_A ATP phosphoribosyltrans 54.4 5.4 0.00018 39.1 2.3 46 373-440 289-335 (344)
114 3net_A Histidyl-tRNA synthetas 52.5 4.7 0.00016 41.2 1.5 19 423-441 342-360 (465)
115 3en2_A Probable primosomal rep 52.2 30 0.001 27.4 6.0 46 61-110 50-95 (101)
116 1se8_A Single-strand binding p 51.1 75 0.0026 30.3 9.7 81 30-114 130-233 (301)
117 3od1_A ATP phosphoribosyltrans 48.1 6 0.00021 39.6 1.5 48 373-442 282-330 (400)
118 1j5w_A Glycyl-tRNA synthetase 47.7 9.5 0.00033 35.6 2.6 57 369-450 134-191 (298)
119 3vdy_A SSB, single-stranded DN 47.1 25 0.00085 28.3 4.9 51 61-115 52-109 (116)
120 3rf1_A Glycyl-tRNA synthetase 46.7 11 0.00036 35.5 2.7 58 369-451 146-204 (311)
121 1gm5_A RECG; helicase, replica 46.1 25 0.00085 38.4 6.1 78 27-112 163-246 (780)
122 2k4k_A GSP13, general stress p 44.6 39 0.0013 27.8 5.8 49 33-89 10-61 (130)
123 2b29_A Replication protein A 7 44.6 88 0.003 25.5 7.9 62 49-115 46-108 (123)
124 4g84_A Histidine--tRNA ligase, 43.9 7.8 0.00027 39.3 1.6 17 424-440 336-352 (464)
125 2i4l_A Proline-tRNA ligase; al 42.7 7.2 0.00024 39.7 1.1 20 422-441 329-349 (458)
126 2kct_A Cytochrome C-type bioge 42.5 1.2E+02 0.004 23.6 11.0 75 27-117 6-87 (94)
127 1h4v_B Histidyl-tRNA synthetas 41.6 15 0.0005 36.7 3.2 19 424-442 301-319 (421)
128 1z9f_A Single-strand binding p 40.7 40 0.0014 28.8 5.4 36 80-115 81-122 (153)
129 4g85_A Histidine-tRNA ligase, 40.2 12 0.0004 38.7 2.3 17 424-440 389-405 (517)
130 4e51_A Histidine--tRNA ligase; 39.9 11 0.00039 38.3 2.1 20 423-442 327-346 (467)
131 2vw9_A Single-stranded DNA bin 39.3 38 0.0013 28.1 4.9 51 61-115 51-108 (134)
132 2j3l_A Prolyl-tRNA synthetase; 39.2 8.6 0.0003 40.3 1.1 19 423-441 435-454 (572)
133 3ull_A DNA binding protein; DN 39.1 26 0.0009 29.0 3.9 36 80-115 86-127 (132)
134 1wu7_A Histidyl-tRNA synthetas 38.3 12 0.0004 37.7 1.9 19 424-442 306-324 (434)
135 1yfs_A Alanyl-tRNA synthetase; 37.7 14 0.00047 37.5 2.2 95 152-264 6-116 (465)
136 2ztg_A Alanyl-tRNA synthetase; 37.4 7.4 0.00025 42.1 0.2 28 424-452 239-266 (739)
137 1htt_A Histidyl-tRNA synthetas 37.0 12 0.0004 37.5 1.5 18 424-441 300-317 (423)
138 2khi_A 30S ribosomal protein S 34.9 55 0.0019 26.2 5.1 49 33-89 33-85 (115)
139 4gs3_A Single-stranded DNA-bin 34.0 1.8E+02 0.006 23.1 10.1 79 29-114 11-107 (107)
140 1qzg_A Protection of telomeres 33.4 2.5E+02 0.0085 24.7 9.6 76 12-96 30-117 (187)
141 3hy0_A Alanyl-tRNA synthetase; 33.0 16 0.00056 36.7 1.8 95 152-263 5-114 (441)
142 1wi5_A RRP5 protein homolog; S 32.7 63 0.0022 25.9 5.2 65 33-106 24-92 (119)
143 2zze_A Alanyl-tRNA synthetase; 32.3 13 0.00044 40.3 1.0 28 424-452 245-272 (752)
144 1kl9_A Eukaryotic translation 32.0 75 0.0026 27.9 5.9 51 33-89 18-71 (182)
145 2a19_A EIF-2- alpha, eukaryoti 31.8 80 0.0028 27.5 6.0 55 28-89 15-71 (175)
146 3koj_A Uncharacterized protein 27.6 92 0.0031 24.8 5.2 75 30-110 12-107 (108)
147 1qe0_A Histidyl-tRNA synthetas 27.1 26 0.00088 34.8 2.2 17 424-440 302-318 (420)
148 4dka_C RNA-editing complex pro 26.1 2.4E+02 0.0083 22.3 8.6 68 28-96 2-77 (105)
149 3ulp_A Single-strand binding p 25.8 83 0.0028 25.5 4.8 51 61-115 56-120 (124)
150 2eqs_A ATP-dependent RNA helic 25.4 1.6E+02 0.0053 22.9 6.2 55 27-89 11-70 (103)
151 1luz_A Protein K3, protein K2; 23.8 2.3E+02 0.008 21.2 7.3 70 27-108 10-83 (88)
152 2cqo_A Nucleolar protein of 40 23.5 50 0.0017 26.7 2.9 49 33-89 25-77 (119)
153 2vl6_A SSO MCM N-TER, minichro 23.0 1.5E+02 0.005 27.4 6.5 38 75-114 222-267 (268)
154 1qvc_A Single stranded DNA bin 22.8 45 0.0016 28.0 2.6 52 60-115 54-115 (145)
155 3m7n_A Putative uncharacterize 21.3 1.8E+02 0.0062 25.1 6.3 54 33-89 60-121 (179)
156 3lgj_A Single-stranded DNA-bin 21.1 1.3E+02 0.0046 25.9 5.3 82 30-115 24-135 (169)
157 2fxq_A Single-strand binding p 20.3 1.2E+02 0.0042 27.9 5.3 52 61-115 54-110 (264)
158 3pgz_A Single-stranded DNA-bin 20.2 1E+02 0.0035 27.4 4.4 82 30-115 27-138 (193)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.9e-106 Score=831.75 Aligned_cols=424 Identities=29% Similarity=0.494 Sum_probs=383.4
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhHhccCCCCCcE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGAS 85 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~~~~~l~~g~~ 85 (460)
.++|+|+||.+. +.|+.|+|+|||+++|.+||++|++|||++|. ||||++++.. .|+.+++ |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999874 67999999999999999999999999999974 9999997642 3666777 999999
Q ss_pred EEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhh
Q 012612 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (460)
Q Consensus 86 V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff 162 (460)
|.|+|+|+++++.++++||.++++++||+|..++|++.+. ++.+.++++||||+|++.++++|++||+|++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998778887654 6788888999999999999999999999999999999
Q ss_pred hhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccc
Q 012612 163 QENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFW 241 (460)
Q Consensus 163 ~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt 241 (460)
.++||+||+||+|+++++||+++.|++ +|++.++||+||||+||| ++++|++||||||||||||+++++||+||||
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~---~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt 228 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPM---KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAW 228 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEE---EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEE
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeE---eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCccccccee
Confidence 999999999999999999999999988 689999999999999998 6779999999999999999999899999999
Q ss_pred eeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccc
Q 012612 242 MIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 320 (460)
Q Consensus 242 ~lE~e~~~~~-~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~ 320 (460)
|||||++|.| ++|+|+++|+||+++++.+.+.+..++++.+.. + ..++.||+|+||.||++++++.|.+
T Consensus 229 ~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~--------l-~~~~~pf~rity~eai~~l~~~g~~- 298 (438)
T 3nem_A 229 SIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE--------L-EEPKLPFPRVSYDKALEILGDLGKE- 298 (438)
T ss_dssp EEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC--------C-CCCCSSCCEEEHHHHHHHHHHTTCC-
T ss_pred eeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC-
Confidence 9999999999 999999999999999999988776555544331 1 1245689999999999999987754
Q ss_pred ccccccccccchhhhcccccccc---cCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHH
Q 012612 321 EFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEY 396 (460)
Q Consensus 321 ~~~~~~~~~l~~~~e~~l~~~~~---~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~ 396 (460)
..||.|++..+|++|.+.+. ..+|+||+|||.+++|||++.+++ +++++||||+++| +||+||++|+||+++
T Consensus 299 ---~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~ 374 (438)
T 3nem_A 299 ---IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDI 374 (438)
T ss_dssp ---CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETT-EEEEEEEEBCCCHHH
T ss_pred ---CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECC-EEEEeCeeecCCHHH
Confidence 46889999999998876431 138999999999999998877654 5789999999999 699999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 397 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++++++.|++++.++|||+|++||||||||||||+|||+|++||.+|||||++|||+++||.
T Consensus 375 l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~ 437 (438)
T 3nem_A 375 LVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437 (438)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.1e-104 Score=823.79 Aligned_cols=425 Identities=30% Similarity=0.533 Sum_probs=366.7
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~ 87 (460)
.+++|+|+. ++.|+.|+|+|||+++|.+| +++|++|||++|. ||||++.+. .....+.+ |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 457888883 36899999999999999995 6999999999975 999999743 22223456 99999999
Q ss_pred EEeeEeecCCCC--------ceEEEEEeEEEEEecCCCCCCC-CccccChhhhhccccccCCChhhhHHHHHHHHHHHHH
Q 012612 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (460)
Q Consensus 88 V~G~v~~~~~~~--------~~~El~~~~i~ils~~~~~~p~-~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (460)
|+|+|++++.+. |++||.|++++|||+|+.+.|- ..+.++.++++++||||+|++.++++|++||+|+++|
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999877532 7899999999999999743221 1234678888899999999999999999999999999
Q ss_pred HHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCC
Q 012612 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 238 (460)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~ 238 (460)
|+||.++||+||+||+|+++++||++++|.+ +||++++||+||||||||++++|++||||||||||||+++++||||
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~---~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~p 243 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL---QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLA 243 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE---EETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCS
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc---cccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchH
Confidence 9999999999999999999999999999987 8999999999999999996556899999999999999999999999
Q ss_pred ccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcc
Q 012612 239 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK 318 (460)
Q Consensus 239 EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~ 318 (460)
|||||||||+|+|++|+|+++|+||+++++.+.+++...+..... + + .....||+|+||.||++++++.|+
T Consensus 244 EFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~----~----~-~~~~~pf~rity~eAi~~l~~~g~ 314 (456)
T 3m4p_A 244 EYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNP----H----L-KLPTRPFKRMTYADAIKYCNDHGI 314 (456)
T ss_dssp EEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----T----C-CCCCSSCEEEEHHHHHHHHHHHTC
T ss_pred HHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCc----c----c-ccCCCCCeEeeHHHHHHHHHHcCC
Confidence 999999999999999999999999999999988765432211111 0 1 123568999999999999999886
Q ss_pred ccc-cccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHH
Q 012612 319 KFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEY 396 (460)
Q Consensus 319 ~~~-~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~ 396 (460)
+.+ ....||.+++.++|+++.+.+ . +|+||+|||.+++|||++.+++ +.+++||||+++|+|||+||++|+||+++
T Consensus 315 ~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~ 392 (456)
T 3m4p_A 315 LNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDE 392 (456)
T ss_dssp CSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHH
T ss_pred CccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHH
Confidence 533 235789999999999998865 4 8999999999999999877654 46889999999999999999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 397 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|.+++++.|+++++++|||++++||+|||||||||+|||+|++||.+|||||++|||+++||.
T Consensus 393 l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 393 LMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455 (456)
T ss_dssp HHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 3
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1.2e-102 Score=807.14 Aligned_cols=421 Identities=29% Similarity=0.568 Sum_probs=365.5
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEEEEe
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G 90 (460)
+|+|+.+ +.|+.|+|+|||+++|.+| +++|++|||++|. ||||++.+. ..|+.. + |+.||+|.|+|
T Consensus 2 ~i~~~~~-------~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVK-------HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGGG-------GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhhh-------cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 4666632 6789999999999999995 7999999999975 999998543 234443 6 99999999999
Q ss_pred eEeecC---CCCceEEEEEeEEEEEecCCCC--CCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhC
Q 012612 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (460)
Q Consensus 91 ~v~~~~---~~~~~~El~~~~i~ils~~~~~--~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (460)
+|++++ ++++++||.++++++||++.+. +|++++.++.+.++++||||+|++.++++|++||+|++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999977 4457899999999999986432 57777778888888999999999999999999999999999999999
Q ss_pred CceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
||+||+||+|++++++|++++|.+ +|+++++||+||||+|||++++|++||||||||||||+++++||+||||||||
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~---~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~ 226 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL---DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 226 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE---EETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEE
T ss_pred CCEEEECCeEeeccCCCchhceee---ccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEE
Confidence 999999999999999999999988 79999999999999999965578999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccc--cccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc-
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF- 322 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~--i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~- 322 (460)
||+|+|++|+|+++|+||+++++.+.+.+... ++.... .+ .....||+|+||.||++++++.++..+.
T Consensus 227 e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~--------~~-~~~~~pf~rity~ea~~~~~~~~~~~~~~ 297 (435)
T 2xgt_A 227 ECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINP--------KF-QPPERPFLRMEYKDAIKWLQEHNVENEFG 297 (435)
T ss_dssp EEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHST--------TC-CCCCSSCEEEEHHHHHHHHHHTTCBCTTS
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccc--------cc-cccCCCceEEEHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999987654211 110000 00 0123589999999999999887654322
Q ss_pred -ccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHHHHHH
Q 012612 323 -LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 400 (460)
Q Consensus 323 -~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~ 400 (460)
...||.+++..+|++|.+.+ . +|+||+|||.+++|||++.+++ +.++++|||++||+|||+|||+|+||+++|+++
T Consensus 298 ~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r 375 (435)
T 2xgt_A 298 NTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKA 375 (435)
T ss_dssp CBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHH
Confidence 25688999999999988765 3 7999999999999999887664 468899999999999999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 401 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 401 ~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
++..|++++.++||++|++||+|||||||||+|||+|+++|.+||||||+|||++++|.
T Consensus 376 ~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~~~ 434 (435)
T 2xgt_A 376 FKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCV 434 (435)
T ss_dssp HHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBCC
T ss_pred HHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 4
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-102 Score=804.91 Aligned_cols=423 Identities=30% Similarity=0.477 Sum_probs=383.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
++++++||... +.|+.|+|+|||+++|.+||++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 56789999763 68999999999999999999999999999975 99999876555777777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCC
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (460)
|+|++++++++++||.|+++++||+|..++|++.++ ++.+.++++||||+|++.+++++++||+|++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997678987765 78888899999999999999999999999999999999999
Q ss_pred ceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeee
Q 012612 167 FIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246 (460)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e 246 (460)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|||++++|++||||||||||+|+++++||+|||||||+|
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~---~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e 229 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV---IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVE 229 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE---EETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE---ecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCccccccceeeEeeee
Confidence 99999999999999999999988 789999999999999998788899999999999999999889999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccccccc
Q 012612 247 LAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 326 (460)
Q Consensus 247 ~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~ 326 (460)
++|.+++|+|+++|+|++++++.+.+++..++++.+... . .++.||+|+||.||++++++.|.+ ..|
T Consensus 230 ~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~--------~-~l~~pf~rity~eA~~~~~~~g~~----~~~ 296 (429)
T 1wyd_A 230 MAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEP--------P-EVKIPIKRLKYTEAIEILRSKGYN----IKF 296 (429)
T ss_dssp EETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCC--------C-CCCSSCEEEEHHHHHHHHHHSSCC----CCT
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhccccc--------c-cCCCCccEEEHHHHHHHHHhcCCC----ccc
Confidence 999999999999999999999999887765555443211 1 124689999999999999877643 468
Q ss_pred ccccchhhhcccccccccCccEEEEeCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcC
Q 012612 327 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 405 (460)
Q Consensus 327 ~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~ 405 (460)
|.+++...|++|.+.+.. +|+||+|||..++|||++.++++ .++++|||+++|+ ||+|||+|+||+++|+++++..|
T Consensus 297 ~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g 374 (429)
T 1wyd_A 297 GDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKKG 374 (429)
T ss_dssp TSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTT
T ss_pred CcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCE-EEEeCeeeeCCHHHHHHHHHHcC
Confidence 889999999988775543 69999999999999988776544 5899999999998 99999999999999999999999
Q ss_pred CCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 406 LNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 406 ~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
++++.++|||+|++||+|||||||||+|||+|+++|.+||||||+||+++++|.+
T Consensus 375 ~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 429 (429)
T 1wyd_A 375 LKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLTP 429 (429)
T ss_dssp CCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999864
No 5
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=2e-101 Score=807.85 Aligned_cols=426 Identities=26% Similarity=0.395 Sum_probs=351.9
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc----cchhhHhccCCCCCcE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~----~~~~~~~~~~l~~g~~ 85 (460)
.+++|++|... +.|+.|+|+|||+++|.+||++|++|||++| +||||++.+. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~~------~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVPA------MAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSGG------GTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 45778888753 7899999999999999999999999999996 5999998742 12444677 999999
Q ss_pred EEEEeeEeecCC-----CCceEEEEEeEEEEEecCCCCCCCCccc-----------------------------------
Q 012612 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (460)
Q Consensus 86 V~V~G~v~~~~~-----~~~~~El~~~~i~ils~~~~~~p~~~~~----------------------------------- 125 (460)
|.|+|+|++++. .++++||++++|+|||+|..++|+..++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999864 3578999999999999998778876321
Q ss_pred -----------------------cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCC
Q 012612 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (460)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg 182 (460)
.+.+...++||||+|++.++++|++||+++++||+||.++||+||+||+|+++++||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 234455589999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHH
Q 012612 183 AGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACAT 260 (460)
Q Consensus 183 ~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e 260 (460)
++++|.| +||+.++||+|||||||| +|++|++||||||||||||+++++|||||||||||||+|. +++++|+++|
T Consensus 279 ga~~F~v---~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E 355 (548)
T 3i7f_A 279 GSNIFEV---KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVME 355 (548)
T ss_dssp ----------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHH
T ss_pred CcceeEE---ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHH
Confidence 9999988 789999999999999986 8899999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhccccc
Q 012612 261 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE 340 (460)
Q Consensus 261 ~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~ 340 (460)
+||+++++.+.+++..+++......+. ..+ .-.||+++||.||++++++.|++ ..|+.|++...|++|.+
T Consensus 356 ~li~~i~~~~~~~~~~el~~~~~~~~~---~~~---~~~pf~rit~~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~ 425 (548)
T 3i7f_A 356 KLFTFIFDEIPKRFPDELKVIRKQYPF---EDL---IYRPFLRLTYKEAIEMLRASGET----IGDYDDFTTPQEVKLGE 425 (548)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHSCC---CCC---CCCSCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhcCCc---ccc---ccCCcceeEHHHHHHHHHHcCCC----CCCccccchHHHHHHHH
Confidence 999999999987766555433221110 001 11589999999999999998765 35778899988887764
Q ss_pred c---cccCccEEEEeCCCcCccccccccC-CccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHH
Q 012612 341 E---AFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 416 (460)
Q Consensus 341 ~---~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~ 416 (460)
. .+...++||+|||.+++|||++.++ ++.+++||||+++| +||+||++|+||+++|++++++.|++++.++|||+
T Consensus 426 ~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~ 504 (548)
T 3i7f_A 426 LIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIE 504 (548)
T ss_dssp HHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 2 2332456778999999999987665 55789999999999 69999999999999999999999999999999999
Q ss_pred HHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 417 ~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++||||||||||||||||+||+||.+|||||++|||+++||.
T Consensus 505 al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 505 SFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp TTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred HHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999984
No 6
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=3.8e-101 Score=795.08 Aligned_cols=425 Identities=36% Similarity=0.610 Sum_probs=385.7
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (460)
++++|+||... +.|+.|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999764 68999999999999999999999999999975 999997542 34666777 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCC--CccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhh
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~--~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (460)
.|+|+|++++++++++||.|+++++||+| .++|+ +.+.++.+.++++||||+|++.+++++++||++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66888 6667888999999999999999999999999999999999999
Q ss_pred CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceee
Q 012612 165 NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 244 (460)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE 244 (460)
+||+||+||+|+++++++++++|.+ +|++.++||+||||+|+|++++|++|||+||||||+|+++++||+|||||||
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~---~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle 228 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL---KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLE 228 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE---EETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEE
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE---eecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCcccccEEEEee
Confidence 9999999999999999999999988 7899999999999999987888999999999999999998889999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccccc
Q 012612 245 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 324 (460)
Q Consensus 245 ~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~ 324 (460)
+|++|.+++|+|+++|+|++++++.+.+++..++++.+... + .++. ++.||+|+||.||++++++.|.+ .
T Consensus 229 ~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~--~---~~~~-~~~pf~rity~ea~~~~~~~g~~----~ 298 (434)
T 1x54_A 229 LEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDL--T---TLKN-TEPPFPRISYDEAIDILQSKGVN----V 298 (434)
T ss_dssp EEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCC--H---HHHT-CCSSCCEEEHHHHHHHHHHTTCC----C
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccc--c---cccc-cCCCCcEEEHHHHHHHHHhcCCC----c
Confidence 99999999999999999999999999888777777665422 1 1221 35699999999999999887643 4
Q ss_pred ccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC-ccceeeeecccC-CceeeecHHHhhhhHHHHHHHHH
Q 012612 325 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLD 402 (460)
Q Consensus 325 ~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~-G~~Ei~~g~~r~~~~~~~~~~~~ 402 (460)
.||.+++..+|++|.+.+. +|+||+|||..++|||++.+++ +.++++|||+++ |+|||+|||+|+||+++|+++++
T Consensus 299 ~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~ 376 (434)
T 1x54_A 299 EWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRIL 376 (434)
T ss_dssp CTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHH
T ss_pred ccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHH
Confidence 6888999999999887653 7999999999999998776654 458999999999 99999999999999999999999
Q ss_pred HcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 403 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 403 ~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
..|++++.++|||+|++||+|||||||||+|||+|+++|.+|||||++||+++++|.+
T Consensus 377 ~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 434 (434)
T 1x54_A 377 EEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP 434 (434)
T ss_dssp HTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBCCC
T ss_pred HcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999863
No 7
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=4.4e-101 Score=791.28 Aligned_cols=412 Identities=26% Similarity=0.423 Sum_probs=316.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC-CCcEEEEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~ 89 (460)
+++|++|. . +.|+.|+|+|||+++|.+||++|++|||++|. ||||++. +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788886 3 67899999999999999999999999999975 9999975 35 99 99999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc----cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhC
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~----~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (460)
|+|++++++++++||.|+++++||+|..++|++.++ ++.+.++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997678887765 7788888999999999999999999999999999999999
Q ss_pred CceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
||+||+||+|+++++|+++++|.+ ++++.++||+||||+|+|++++|++|||+||||||+|+++++||+|||||||+
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~---~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~ 219 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV---DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDV 219 (422)
T ss_dssp TCEECCCC-------------------------------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE---eeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccceeEEeee
Confidence 999999999999999999999988 78999999999999999865588999999999999999988899999999999
Q ss_pred eecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccccc
Q 012612 246 ELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 324 (460)
Q Consensus 246 e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~ 324 (460)
|++|+ |++|+|+++|+|++++++.+.+++..++++.+... . ....||+|+||.||++++++.| ..
T Consensus 220 e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~--------~-~~~~pf~rity~eA~~~~~~~~-----~~ 285 (422)
T 1n9w_A 220 EMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW--------P-SFPQDIPRLTHAEAKRILKEEL-----GY 285 (422)
T ss_dssp EEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCC--------C-CCSSSCCEEEHHHHHHHHHHTS-----CC
T ss_pred eeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCccc--------c-ccCCCcceeEHHHHHHHHHhcC-----Cc
Confidence 99999 99999999999999999999887766665544311 0 1115899999999999998766 24
Q ss_pred ccccccchhhhcccccccc---cCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHH
Q 012612 325 KWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 401 (460)
Q Consensus 325 ~~~~~l~~~~e~~l~~~~~---~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~ 401 (460)
.||.+++..+|++|.+.+. +.+|+||+|||..++|||++.+++ .++++|||++||+ ||+|||+|+||+++|++++
T Consensus 286 ~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~rf 363 (422)
T 1n9w_A 286 PVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFRGL-EITSGGQRIHRYEELLESL 363 (422)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEEEEEECCE-EEEeCEeecCCHHHHHHHH
Confidence 6888898888888765431 126999999999999999988776 7899999999998 9999999999999999999
Q ss_pred HHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 402 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 402 ~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
+..|++++.++|||+|++||+|||||||||+|||+|+++|.+||||||+|||++++|.+
T Consensus 364 ~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~~~p 422 (422)
T 1n9w_A 364 KAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLTP 422 (422)
T ss_dssp HHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC--------
T ss_pred HHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999853
No 8
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=6.8e-100 Score=799.77 Aligned_cols=440 Identities=16% Similarity=0.226 Sum_probs=362.5
Q ss_pred CCCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCcc----chh
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYD 73 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~~----~~~ 73 (460)
.|++++|.++++++++.+.|++ +....++.|+|+|||+++|.+| |++|++|||++| .||||++++.. .|+
T Consensus 25 ~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (521)
T 3bju_A 25 DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFI 102 (521)
T ss_dssp CSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHH
T ss_pred CCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHH
Confidence 4888999999999999876542 2334578899999999999999 999999999995 59999987532 355
Q ss_pred hH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCcc-ccChhhhhccccccCC-ChhhhHHHHH
Q 012612 74 QV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARV 150 (460)
Q Consensus 74 ~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~-~~~~~~~r~~r~l~~R-~~~~~~~~~~ 150 (460)
.+ +. |+.||+|.|+|+|.+++++ ++||.|++|++||+|..++|.... ..+.+...++||||+| ++.++++|++
T Consensus 103 ~~~~~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~ 178 (521)
T 3bju_A 103 HINNK--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII 178 (521)
T ss_dssp HHHHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHH
T ss_pred HHHhc--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHH
Confidence 53 56 9999999999999999865 899999999999999855554322 2356666699999999 8999999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E 229 (460)
||+|+++||+||.++||+||+||+|+++++++++++|.+ ++++|+.++||+|||||||| |+++|++||||||||||||
T Consensus 179 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t-~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E 257 (521)
T 3bju_A 179 RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFIT-YHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE 257 (521)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEE-EETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceee-ecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCC
Confidence 999999999999999999999999998877777899965 45899999999999999997 8899999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHH
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 309 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea 309 (460)
++++ ||||||||||+||+|+|++|+|+++|+||+++++.+.+++. +++.+... +. ..+...+..||+|++|.||
T Consensus 258 ~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~--~~~~~~~~--d~-~~~~~d~~~pf~rit~~ea 331 (521)
T 3bju_A 258 GIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK--VTYHPDGP--EG-QAYDVDFTPPFRRINMVEE 331 (521)
T ss_dssp CCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSE--EEECTTCT--TS-CCEEEECCSSCEEEEHHHH
T ss_pred CCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCce--EEeccccc--cc-ccceeccCCCcccccHHHH
Confidence 9965 99999999999999999999999999999999999987652 22211100 00 0000012345555555555
Q ss_pred HHHHHH------------------------HccccccccccccccchhhhcccccccccCccEEEEeCCCcCcccccccc
Q 012612 310 IELLIK------------------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365 (460)
Q Consensus 310 ~~~l~~------------------------~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~ 365 (460)
++.+.. .|+.+.....||..++..+|+++.+.+. +|+||+|||.+++||+++.+
T Consensus 332 i~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~--~P~fI~dyP~~~spla~~~~ 409 (521)
T 3bju_A 332 LEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI--NPTFICDHPQIMSPLAKWHR 409 (521)
T ss_dssp HHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCC--SCEEEECCBGGGCTTBCBCS
T ss_pred HHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEECCccccCcccccCC
Confidence 544432 2222222234666777888888887654 79999999999999998777
Q ss_pred CCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc------CCCccc--HHHHHHHHhcCCCCCcceeccHHHHHH
Q 012612 366 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQ 437 (460)
Q Consensus 366 ~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~~~~~G~pp~~G~giGidRL~m 437 (460)
++++++++|||+++|. ||+||++|+||++.|+++++.. |.+++. ++|||+|++||||||||||||||||+|
T Consensus 410 ~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~gG~GlGiDRLvM 488 (521)
T 3bju_A 410 SKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAM 488 (521)
T ss_dssp SSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHH
T ss_pred CCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCceeEEEcHHHHHH
Confidence 7778999999999995 9999999999999999998654 776654 599999999999999999999999999
Q ss_pred HHcCCCCccccccccCCCCC
Q 012612 438 FATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 438 ~l~~~~~Irdv~~FPr~~~~ 457 (460)
+|||.+||||||+||+++..
T Consensus 489 lltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 489 FLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HHTTCSSGGGSCSSCCCCCC
T ss_pred HHhCCCcHHhEecCCCCCCc
Confidence 99999999999999998864
No 9
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=1.1e-99 Score=793.96 Aligned_cols=429 Identities=20% Similarity=0.283 Sum_probs=354.5
Q ss_pred CCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhH
Q 012612 3 SKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQV 75 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~ 75 (460)
|++++|++++++.+|.+.+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.+
T Consensus 56 ~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~ 133 (529)
T 4ex5_A 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAF 133 (529)
T ss_dssp SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHH
T ss_pred CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHH
Confidence 78899999999999998764210 12378999999999999999999999999996 5999998753 236667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
++ |+.||+|.|+|+|++++++ ++||.|++|+|||+|+ .|+|.+.+++ +.+.++||||+| ++.++++|++|
T Consensus 134 ~~--l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~R 207 (529)
T 4ex5_A 134 KK--WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRAR 207 (529)
T ss_dssp HT--CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHH
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 88 9999999999999998865 8999999999999997 5666665543 555699999997 88999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|+++||+||.++||+||+||+|+++.+++++++|.+ ++++++.++||+|||||||| |+++|++||||||||||||+
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t-~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~ 286 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVT-HHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEG 286 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeccCCCCccccccc-ccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCC
Confidence 99999999999999999999999998766666789964 55899999999999999986 88999999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHH
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 310 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~ 310 (460)
++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++ .+.+.+... .+..||+|+||.||+
T Consensus 287 ~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~i----------d~~~pf~Rity~eAi 353 (529)
T 4ex5_A 287 VS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGREL----------DLAQPFHRLTITQAI 353 (529)
T ss_dssp CB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTEEE----------ETTSCCEEEEHHHHH
T ss_pred CC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCceee----------ccCCCceEEEHHHHH
Confidence 95 79999999999999999999999999999999999998765 344433211 135689999999998
Q ss_pred HHHHH-------------------Hcccccccc--ccc--cccchhhhcccccccccCccEEEEeCCCcCccccccccCC
Q 012612 311 ELLIK-------------------AKKKFEFLV--KWG--CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 367 (460)
Q Consensus 311 ~~l~~-------------------~~~~~~~~~--~~~--~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~ 367 (460)
+.+.. .|++++... .|+ ..++..++.. +++.+. +|+||+|||.+++|||++.+++
T Consensus 354 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~-vE~~l~-~P~FI~dyP~~~splak~~~~~ 431 (529)
T 4ex5_A 354 QKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEET-AEAQLW-EPTFIIDYPIEVSPLARESDTV 431 (529)
T ss_dssp HHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHH-TGGGCC-SCEEEEEEEGGGCTTBCBCSSS
T ss_pred HHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHH-hccccC-CCEEEECCchhhCCCcccCCCC
Confidence 76543 222222100 233 2333334444 444455 7999999999999999766667
Q ss_pred ccceeeeecccCCceeeecHHHhhhhHHHHHHHHHH------cCCCcccH--HHHHHHHhcCCCCCcceeccHHHHHHHH
Q 012612 368 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFA 439 (460)
Q Consensus 368 ~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL~m~l 439 (460)
+.+++||||+++|+ ||+||++|+||++.|++++++ .|.+++.. +|||+|++||||||||||||||||+|++
T Consensus 432 p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMll 510 (529)
T 4ex5_A 432 AGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLL 510 (529)
T ss_dssp TTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHH
T ss_pred CCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHH
Confidence 78999999999996 999999999999999888753 34333322 8999999999999999999999999999
Q ss_pred cCCCCccccccccCCCC
Q 012612 440 TGVENIRDAIPFPRTPG 456 (460)
Q Consensus 440 ~~~~~Irdv~~FPr~~~ 456 (460)
||.+|||||++||+...
T Consensus 511 tg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 511 TDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp HTCSSGGGGCSSCCCCC
T ss_pred cCCCcHHHeecCCccCC
Confidence 99999999999999764
No 10
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=1.8e-99 Score=792.75 Aligned_cols=431 Identities=19% Similarity=0.293 Sum_probs=355.5
Q ss_pred CCCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchh-
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD- 73 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~- 73 (460)
.|+.++|.++|++.+|...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+
T Consensus 33 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 110 (504)
T 1e1o_A 33 VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYND 110 (504)
T ss_dssp CSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHH
T ss_pred CCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHH
Confidence 488899999999999998754210 01278999999999999999999999999996 5999998763 2366
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC---hhhhhccccccCC-ChhhhHHHH
Q 012612 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVAR 149 (460)
Q Consensus 74 ~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~ 149 (460)
.++. |+.||+|.|+|+|++++++ ++||.|++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|+
T Consensus 111 ~~~~--l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~--plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r 184 (504)
T 1e1o_A 111 QFKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALR--PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFV 184 (504)
T ss_dssp TGGG--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCC-------TTHHHHTHHHHHHHCHHHHHHHH
T ss_pred HHhc--CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCC--CCCccccCCcChhhhhhccchhhhcCHHHHHHHH
Confidence 5677 9999999999999999875 89999999999999974 55556555 4555699999996 899999999
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccccc
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRA 228 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~ 228 (460)
+||+|+++||+||.++||+||+||+|+++++++++++|.|. +++++.++||+|||||||| |+++|++|||||||||||
T Consensus 185 ~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~ 263 (504)
T 1e1o_A 185 VRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN 263 (504)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC
Confidence 99999999999999999999999999987666667899764 4789999999999999997 789999999999999999
Q ss_pred CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHH
Q 012612 229 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 308 (460)
Q Consensus 229 E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~e 308 (460)
|+++ .||+|||||||+||+|+|++|+|+++|+||+++++.+.+++. +.+.+.. + -+..||+|+||.|
T Consensus 264 E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~~~~--------i--~~~~pf~rity~e 330 (504)
T 1e1o_A 264 EGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYGEHV--------F--DFGKPFEKLTMRE 330 (504)
T ss_dssp CCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEETTEE--------E--ETTSCCEEEEHHH
T ss_pred CCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeCCEe--------e--ccCCCceEEeHHH
Confidence 9996 599999999999999999999999999999999999988763 4443321 1 1345889999999
Q ss_pred HHHHHHH-Hcc------------------ccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCcc
Q 012612 309 AIELLIK-AKK------------------KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 369 (460)
Q Consensus 309 a~~~l~~-~~~------------------~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~ 369 (460)
|++.+.. .+. +++....+|..++..++.++.+. +. +|+||+|||.+++||+++.++++.
T Consensus 331 Ai~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~-~~-~p~fV~dyP~~~~pf~~~~~~dp~ 408 (504)
T 1e1o_A 331 AIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAH-LI-QPTFITEYPAEVSPLARRNDVNPE 408 (504)
T ss_dssp HHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGG-CC-SCEEEECCBGGGCTTBCBCSSCTT
T ss_pred HHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhcc-CC-CeEEEECCCcccCcCcCCCCCCCC
Confidence 9877654 211 11100112223344455554444 34 799999999999999887766777
Q ss_pred ceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc-----CCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 370 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 370 ~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
++++|||+++|+ ||+|||+|+||++.|+++++.. ..+++.+ +|||+|++||+|||||||||||||+|+|||
T Consensus 409 ~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg 487 (504)
T 1e1o_A 409 ITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTN 487 (504)
T ss_dssp BBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHT
T ss_pred ceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEEcHHHHHHHHhC
Confidence 999999999998 9999999999999999998753 1234443 999999999999999999999999999999
Q ss_pred CCCccccccccCCCCC
Q 012612 442 VENIRDAIPFPRTPGS 457 (460)
Q Consensus 442 ~~~Irdv~~FPr~~~~ 457 (460)
.+||||||+||+++..
T Consensus 488 ~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 488 SHTIRDVILFPAMRPQ 503 (504)
T ss_dssp CSSGGGTSSSCCCCC-
T ss_pred CCcHHhEeccCCCCCC
Confidence 9999999999998753
No 11
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=5.5e-99 Score=788.09 Aligned_cols=430 Identities=19% Similarity=0.284 Sum_probs=356.3
Q ss_pred CCCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhh
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ 74 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~ 74 (460)
.|+.++|.++|++.||...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.
T Consensus 25 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (493)
T 3a74_A 25 DPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYEL 102 (493)
T ss_dssp CTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHH
T ss_pred CCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHH
Confidence 478889999999999998754210 01278999999999999999999999999996 5999998653 23666
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC---hhhhhccccccCC-ChhhhHHHHH
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARV 150 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~ 150 (460)
++. |+.||+|.|+|+|++++++ ++||.|+++++||+|.. |+|.+.++ .+...++||||+| ++.+++++++
T Consensus 103 ~~~--l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~ 176 (493)
T 3a74_A 103 FKI--SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFIT 176 (493)
T ss_dssp HHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHH
T ss_pred Hhc--CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHH
Confidence 778 9999999999999999875 89999999999999974 55556555 4555699999996 8999999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E 229 (460)
||+|++++|+||.++||+||+||+|+++++++++++|.+. +++++.++||+||||+||| ++++|++||||||||||||
T Consensus 177 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E 255 (493)
T 3a74_A 177 RSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNE 255 (493)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCC
Confidence 9999999999999999999999999988776667899764 4789999999999999997 7899999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHH
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 309 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea 309 (460)
+++ .||+|||||||+||+|+|++|+|+++|+||+++++.+.+++. +.+.+... -+..||+|+||.||
T Consensus 256 ~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~~~i----------~~~~pf~rity~ea 322 (493)
T 3a74_A 256 GIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGEHLV----------DLTPEWRRLHMVDA 322 (493)
T ss_dssp CCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETTEEE----------ECCSSCEEEEHHHH
T ss_pred CCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCCEee----------ccCCCcceeeHHHH
Confidence 996 599999999999999999999999999999999999988763 33322100 02345666666666
Q ss_pred HHHH------------------HHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccce
Q 012612 310 IELL------------------IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 371 (460)
Q Consensus 310 ~~~l------------------~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~ 371 (460)
++.+ ++.|.+.+....+|..++..++.++.+.+ . +|+||+|||.+++||+++.++++.++
T Consensus 323 i~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~-~-~p~fv~dyP~~~~pf~~~~~~dp~~~ 400 (493)
T 3a74_A 323 IKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKL-I-QPTFIYGHPVEISPLAKKNPDDPRFT 400 (493)
T ss_dssp HHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGC-C-SCEEEECCBGGGCTTBCBCSSCTTBB
T ss_pred HHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhccc-C-CcEEEECCCcccCCccCcCCCCCCeE
Confidence 5544 33343322112345566666776655544 4 79999999999999988776677799
Q ss_pred eeeecccCCceeeecHHHhhhhHHHHHHHHHHc-----CCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcCCC
Q 012612 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443 (460)
Q Consensus 372 ~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~ 443 (460)
++|||+++|+ ||+||++|+||++.|+++++.. ..+++.+ +|||+|++||+|||||||||+|||+|+|||.+
T Consensus 401 ~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~ 479 (493)
T 3a74_A 401 DRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSP 479 (493)
T ss_dssp SEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEHHHHHHHHHTCS
T ss_pred EEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcHHHHHHHHhCCC
Confidence 9999999998 9999999999999999998652 1234443 99999999999999999999999999999999
Q ss_pred CccccccccCCCC
Q 012612 444 NIRDAIPFPRTPG 456 (460)
Q Consensus 444 ~Irdv~~FPr~~~ 456 (460)
||||||+||+.+.
T Consensus 480 ~IRdVi~FPr~~~ 492 (493)
T 3a74_A 480 SIRDVLLFPQMRH 492 (493)
T ss_dssp SGGGTSSSCCCCC
T ss_pred cHHhEeccCCCCC
Confidence 9999999999864
No 12
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=1.5e-98 Score=785.24 Aligned_cols=430 Identities=24% Similarity=0.404 Sum_probs=366.0
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCe-EEEEEEcCCCccceEEEEeCCc------cchhhHhccCCCC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~-~Fv~lrD~~~~~~iQvv~~~~~------~~~~~~~~~~l~~ 82 (460)
.+++|++|... ++.|+.|+|+|||+++|.+|++ +|++|||++| .||||++.+. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CCC
Confidence 34567777542 2679999999999999999997 9999999996 4999998651 12455677 999
Q ss_pred CcEEEEEeeEeecCC-----CCceEEEEEeEEEEEecCCCCCCCCccc---------------cChhhhhccccccCCCh
Q 012612 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (460)
Q Consensus 83 g~~V~V~G~v~~~~~-----~~~~~El~~~~i~ils~~~~~~p~~~~~---------------~~~~~~r~~r~l~~R~~ 142 (460)
||+|.|+|+|++++. .+|++||.|++++|||+|..++|++.++ ++.+.+.++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999974 3478999999999999998778886432 45666779999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEE
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYT 221 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfe 221 (460)
.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +++++++||+||||+|+| +|++|++||||
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~---~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ 249 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV---TYFKGKAYLAQSPQFNKQQLIVADFERVYE 249 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE---EETTEEEEECSCTHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee---ccCCccEEcccChHHHHHHHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999998 578999999999999997 67999999999
Q ss_pred EecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCC
Q 012612 222 FGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 300 (460)
Q Consensus 222 I~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 300 (460)
||||||||+++++||+|||||||+|++|. +++|+|+++|+||+++++.+.+++..++.......... .+....+.+
T Consensus 250 ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~---~~~~~~~~~ 326 (487)
T 1eov_A 250 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVE---EFKLPKDGK 326 (487)
T ss_dssp EEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCC---CCCCCTTCC
T ss_pred EeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCc---ceecccCCC
Confidence 99999999999999999999999999997 69999999999999999999876654443221111000 011011237
Q ss_pred CcccCHHHHHHHHHHHccccccccccccccchhhhcccccc---cccCccEEEEeCCCcCcccccccc-CCccceeeeec
Q 012612 301 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDM 376 (460)
Q Consensus 301 ~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~---~~~~~p~~I~~fP~~~~pf~~~~~-~~~~~~~~fDl 376 (460)
|+++++.||++++++.|.+ ..|+.+++...|+.|.+. .+...|+||+|||..++|||++.+ +++.++++|||
T Consensus 327 ~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL 402 (487)
T 1eov_A 327 MVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDF 402 (487)
T ss_dssp CEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEE
T ss_pred eeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEEE
Confidence 8999999999999887754 346667887777776531 223257899999999999975544 45568999999
Q ss_pred ccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc--cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCC
Q 012612 377 LVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454 (460)
Q Consensus 377 ~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~--~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~ 454 (460)
+++|+ ||+|||+|+||++.|+++++..|++++ .++|||+|++||+|||||||||+|||+|+|+|.+||||||+|||+
T Consensus 403 ~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~ 481 (487)
T 1eov_A 403 FMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRD 481 (487)
T ss_dssp EETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCB
T ss_pred EeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCC
Confidence 99995 999999999999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 012612 455 PGSVE 459 (460)
Q Consensus 455 ~~~~~ 459 (460)
+++|.
T Consensus 482 ~~r~~ 486 (487)
T 1eov_A 482 PKRLR 486 (487)
T ss_dssp TTBCC
T ss_pred CCCCC
Confidence 99986
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=4.6e-97 Score=786.36 Aligned_cols=413 Identities=22% Similarity=0.362 Sum_probs=336.8
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
++|++.+|... +.|+.|+|+|||+++|++|+++|++|||++|. ||||++.+...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 67899999774 68999999999999999999999999999974 99999875435666777 9999999999
Q ss_pred eeEeecCC-----CCceEEEEEeEEEEEecCCC-CCCCCc------cccChhhhh-ccccccCCChhhhHHHHHHHHHHH
Q 012612 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (460)
Q Consensus 90 G~v~~~~~-----~~~~~El~~~~i~ils~~~~-~~p~~~------~~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~ 156 (460)
|+|++++. ++|++||.|++++|||+|.+ ++|+.+ +....+.+| ++||||+|++.++++|++||+|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35789999999999999973 244544 223334455 999999999999999999999999
Q ss_pred HHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCC
Q 012612 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSR 235 (460)
Q Consensus 157 ~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~r 235 (460)
++|+||.++||+||+||+|+++++||+++ |.|++..+.+.-+||+|||||||| ||++|++||||||||||||+++++|
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r 231 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADR 231 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSC
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCc
Confidence 99999999999999999999999998876 987653333444459999999998 7899999999999999999997766
Q ss_pred CCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHH--
Q 012612 236 HLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL-- 313 (460)
Q Consensus 236 Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l-- 313 (460)
| ||||||||||+|.|++|+|+++|+||+++++.+.+.. +..||+|+||.||++.+
T Consensus 232 ~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~----------------------~~~pf~rity~eA~~~~g~ 288 (580)
T 1l0w_A 232 Q-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVE----------------------LPLPFPRLSYEEAMERYGS 288 (580)
T ss_dssp C-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC----------------------CCSSCCEEEHHHHHHHHSS
T ss_pred C-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCCc----------------------cCCCccEEEHHHHHHHhcC
Confidence 6 6999999999999999999999999999999986421 11245555555554443
Q ss_pred -----------------------------------------------------HHHccccccccccccc-cchhhhcc--
Q 012612 314 -----------------------------------------------------IKAKKKFEFLVKWGCD-LQSEHERY-- 337 (460)
Q Consensus 314 -----------------------------------------------------~~~~~~~~~~~~~~~~-l~~~~e~~-- 337 (460)
++.|..--..+.|+.+ +.+.++++
T Consensus 289 dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~ 368 (580)
T 1l0w_A 289 DKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLE 368 (580)
T ss_dssp SSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHHG
T ss_pred CCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhhh
Confidence 2222100000112222 22211111
Q ss_pred --------------------------------------------cccccccCccEEEEeCCCc------------Ccccc
Q 012612 338 --------------------------------------------LTEEAFGGCPVIVSDYPKE------------IKAFY 361 (460)
Q Consensus 338 --------------------------------------------l~~~~~~~~p~~I~~fP~~------------~~pf~ 361 (460)
++++. .+|+||+|||.. ++|||
T Consensus 369 ~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~~--~~p~fV~dfP~~~~~~~~~~~~a~~~PFt 446 (580)
T 1l0w_A 369 PVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREG--FRFLWVVDFPLLEWDEEEEAWTYMHHPFT 446 (580)
T ss_dssp GGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCCS--CCEEEEECCBSBCCCTTTSCCCBSSCTTB
T ss_pred HHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhcccccc--cCeEEEEcCCcccccccccccccccCCcc
Confidence 23332 279999999996 89999
Q ss_pred ccccC-------Cc-cc-eeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCccc----HHHHHHHHhcCCCCCcce
Q 012612 362 MRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 362 ~~~~~-------~~-~~-~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~~~~~G~pp~~G~ 428 (460)
|+.++ ++ .. +++|||++||+ ||+|||+|+||++.|+++|+..|+++++ ++|||+|++||+||||||
T Consensus 447 ~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~ 525 (580)
T 1l0w_A 447 SPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGI 525 (580)
T ss_dssp CBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEE
T ss_pred CCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceE
Confidence 88765 34 35 79999999998 9999999999999999999999998876 789999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|||+|||+|+|+|.+||||||+||++++.+.
T Consensus 526 glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 526 AWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp EEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred EEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 9999999999999999999999999998764
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=3.3e-96 Score=782.20 Aligned_cols=434 Identities=21% Similarity=0.330 Sum_probs=346.2
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V 88 (460)
++|++.+|... +.|+.|+|+|||+++|++|+++|++|||++|. ||||++.+. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999774 67999999999999999999999999999974 999997653 23666777 999999999
Q ss_pred EeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCcc-ccChhhhhccccccCCChhhhHHHHHHHHHHHHHHH
Q 012612 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (460)
Q Consensus 89 ~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~-~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (460)
+|+|.+++. ++|++||.|++++|||+|.+ +|.+.. .++.+...++||||+|++.++++|++||+|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~-lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADV-LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCS-CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccCC-CCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 35789999999999999973 555433 334444449999999999999999999999999999
Q ss_pred hhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCc
Q 012612 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAE 239 (460)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~E 239 (460)
||.++||+||+||+|+++++||+++ |.|++..+.+.-+||+|||||||| ||++|++||||||||||||+++++|| ||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~-pE 228 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PE 228 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBC-SE
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcC-cc
Confidence 9999999999999999999998877 988664344444569999999998 78999999999999999999977666 69
Q ss_pred cceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcc---cccc------cccc-----------------ccchh---H
Q 012612 240 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE---DMDF------FNTW-----------------IEKGI---I 290 (460)
Q Consensus 240 Ft~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~---~i~~------~~~~-----------------~~~~~---~ 290 (460)
|||||+||+|+|++|+|+++|+||+++++.+.+.+.. .+.| ++.. ...++ .
T Consensus 229 FT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~ 308 (585)
T 1c0a_A 229 FTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFA 308 (585)
T ss_dssp EEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHH
T ss_pred cceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcceeh
Confidence 9999999999999999999999999999998765421 1111 1100 00000 0
Q ss_pred hhhhh----h-----h-cCCCcccCHHHHHHHHHHHccc-ccccccccc------ccchhhhcc----------------
Q 012612 291 DRLST----V-----A-ERDFVQLSYTDAIELLIKAKKK-FEFLVKWGC------DLQSEHERY---------------- 337 (460)
Q Consensus 291 ~~l~~----~-----~-~~~~~~i~~~ea~~~l~~~~~~-~~~~~~~~~------~l~~~~e~~---------------- 337 (460)
+.+++ + . +.+|++.+++++.+++++.|.. +. .+.|+. .+.+.++++
T Consensus 309 ~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~ 387 (585)
T 1c0a_A 309 GPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLA-YIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQ 387 (585)
T ss_dssp HHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCC-EEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCC
T ss_pred hhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCce-eEEecccccccccccchhhhhcCHHHHHHHHHHhCCC
Confidence 00110 0 0 1136677788888888876532 10 112222 122222111
Q ss_pred -------------------------------cccccccCccEEEEeCCCc-----------CccccccccC-------Cc
Q 012612 338 -------------------------------LTEEAFGGCPVIVSDYPKE-----------IKAFYMRQND-------DG 368 (460)
Q Consensus 338 -------------------------------l~~~~~~~~p~~I~~fP~~-----------~~pf~~~~~~-------~~ 368 (460)
++++.. .+|+||+|||.. ++||||+.++ ++
T Consensus 388 ~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~-~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp 466 (585)
T 1c0a_A 388 DGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESK-WAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAP 466 (585)
T ss_dssp TTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSC-CCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSC
T ss_pred cCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccc-cccEEEEeCCccccccccccccccCCccCCCchhhhhhccCC
Confidence 222212 279999999996 8999998765 34
Q ss_pred -cc-eeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCccc----HHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 369 -RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 369 -~~-~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
.. +++|||++||+ ||+|||+|+||++.|+++|+..|+++++ ++|||+|++||+|||||||||+|||+|+|||.
T Consensus 467 ~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg~ 545 (585)
T 1c0a_A 467 ENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGT 545 (585)
T ss_dssp TTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTC
T ss_pred cceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcCC
Confidence 25 89999999998 9999999999999999999999999876 78999999999999999999999999999999
Q ss_pred CCccccccccCCCCCcc
Q 012612 443 ENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 443 ~~Irdv~~FPr~~~~~~ 459 (460)
+||||||+|||+++.+.
T Consensus 546 ~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 546 DNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp SCGGGGSSSCCCTTSCB
T ss_pred CcHHheecCCCCCCccc
Confidence 99999999999998764
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-86 Score=703.24 Aligned_cols=438 Identities=23% Similarity=0.293 Sum_probs=330.4
Q ss_pred CCCCCccc-cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhHh
Q 012612 1 MGSKVGEF-RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (460)
Q Consensus 1 ~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~~ 76 (460)
|-|.+..| .++|++.+|... +.|++|+|+|||+++|++ +|++|||++|. ||||++.+.. .++.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDGL--VQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSCE--EEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHh
Confidence 33555554 678999999875 789999999999999975 59999999974 9999987642 356677
Q ss_pred ccCCCCCcEEEEEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccccC--hhhhh-ccccccCCChhhhH
Q 012612 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (460)
Q Consensus 77 ~~~l~~g~~V~V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~~~--~~~~r-~~r~l~~R~~~~~~ 146 (460)
. |+.||+|.|+|+|++++. .+|++||.+++++|||+|. ++|++.+.+. .+++| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 8 999999999999998643 2468999999999999998 6888766543 34555 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-hCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEec
Q 012612 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGP 224 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~ 224 (460)
+|++||++++++|+||. ++||+||+||+|++++++|+.+ |.|++ +.++..+||+||||+||| ||++|++|||||+|
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~-~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~ 224 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPS-REPGKFYSLPQSPQQFKQLLMVGGLDRYFQVAR 224 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEEC-SSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceecc-ccCCcccccccCHHHHHHHHHhcccCcEEEEEh
Confidence 99999999999999995 7999999999999988888775 88765 467889999999999997 78999999999999
Q ss_pred ccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhcc-------------------Cccccccc----
Q 012612 225 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN-------------------CKEDMDFF---- 281 (460)
Q Consensus 225 ~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~-------------------~~~~i~~~---- 281 (460)
|||||++++ +|+||||||||||+|.|++|+|+++|+||+++++.+... .++++.+-
T Consensus 225 ~FR~E~~~t-~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~ 303 (617)
T 4ah6_A 225 CYRDEGSRP-DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKII 303 (617)
T ss_dssp EECCCSSCS-SSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEE
T ss_pred heecccCCC-CcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCcccc
Confidence 999999965 568999999999999999999999999999998654211 11222110
Q ss_pred ---ccccc--chhH-hhhhh---------hhcC--CCcccCHHHHHHHHHH-----------------------------
Q 012612 282 ---NTWIE--KGII-DRLST---------VAER--DFVQLSYTDAIELLIK----------------------------- 315 (460)
Q Consensus 282 ---~~~~~--~~~~-~~l~~---------~~~~--~~~~i~~~ea~~~l~~----------------------------- 315 (460)
.-+.. ..+. ..+.. +.+. .+.|-..++..+..+.
T Consensus 304 DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~ 383 (617)
T 4ah6_A 304 DISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMESQ 383 (617)
T ss_dssp ECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHH
T ss_pred cHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHHH
Confidence 00000 0000 00000 0000 0122122222222222
Q ss_pred -------Hccccccccc--ccc------ccch----hhhcc------cccccccCccEEEEeCCCc-------------C
Q 012612 316 -------AKKKFEFLVK--WGC------DLQS----EHERY------LTEEAFGGCPVIVSDYPKE-------------I 357 (460)
Q Consensus 316 -------~~~~~~~~~~--~~~------~l~~----~~e~~------l~~~~~~~~p~~I~~fP~~-------------~ 357 (460)
.+.+-.+.+- .|. .|.. ..+.. |.++- ...++||+|||.. +
T Consensus 384 ~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~-~~~f~WvvdfPlf~~~~~~~~~~~a~H 462 (617)
T 4ah6_A 384 RLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPT-LFSFLWVVDFPLFLPKEENPRELESAH 462 (617)
T ss_dssp HHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTT-SCCEEEEECCBSBCCCSSSSSSCCBSS
T ss_pred HHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCC-CeEEEEEeccCCcCCccccccceeecc
Confidence 1111000000 000 0000 01111 22221 1269999999983 6
Q ss_pred ccccccccCC-------c--cceeeeecccCCceeeecHHHhhhhHHHHHHHHH-HcCCCcccHHHHHHHHhcCCCCCcc
Q 012612 358 KAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-ELKLNRDSYWWYLDLRHYGSVPHAG 427 (460)
Q Consensus 358 ~pf~~~~~~~-------~--~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~-~~~~~~~~~~~yl~~~~~G~pp~~G 427 (460)
+||+++...| + -.+++|||++||+ ||+|||+|+|+++.|+++++ .+|++++.++|||+|++||+|||||
T Consensus 463 hPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG 541 (617)
T 4ah6_A 463 HPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGG 541 (617)
T ss_dssp CSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEE
T ss_pred CCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCc
Confidence 8999886433 2 2578899999996 99999999999999999999 7899888899999999999999999
Q ss_pred eeccHHHHHHHHcCCCCccccccccCCCCC
Q 012612 428 FGLGFERLVQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 428 ~giGidRL~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
+|+|+|||+|+++|.+||||||+||++...
T Consensus 542 ~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 542 IALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp EEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred eeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 999999999999999999999999998754
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=3.5e-75 Score=583.72 Aligned_cols=297 Identities=19% Similarity=0.184 Sum_probs=236.3
Q ss_pred cCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCC-CCCCceeeeccccCC------ccccccccHHHHHH
Q 012612 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLDFFE------KPAFLTVSGQLNAE 210 (460)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~~F~v~~~~~~~------~~~~L~~Spql~l~ 210 (460)
+.|++ .+++|++||+|+++||+||.++||+||+||+|++++++ +.+++|.+ +|++ .++||+||||||||
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~---~~~~~~~~~~~~~yL~~Spql~~k 102 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET---RFVGPGHSQGMNLWLMTSPEYHMK 102 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE---EECCSTTSCCEEEEECSCSHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE---EecCcccccCCCEeecCCHHHHHH
Confidence 44554 88999999999999999999999999999999998886 46789988 6775 78999999999998
Q ss_pred -HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchh
Q 012612 211 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 289 (460)
Q Consensus 211 -l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~ 289 (460)
+|++|++||||||||||||++ +.||+|||||||+|++|.|++|+|+++|+||+++++. .+|.+...
T Consensus 103 ~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~------------~~~~rity 169 (345)
T 3a5y_A 103 RLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------PAAESLSY 169 (345)
T ss_dssp HHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC------------CCCEEEEH
T ss_pred HHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC------------CCCcEeeH
Confidence 899999999999999999999 8999999999999999999999999999999999861 12333344
Q ss_pred HhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccc-cccchhhhcccc----cccccCccEEEEeCCCcCccccccc
Q 012612 290 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLT----EEAFGGCPVIVSDYPKEIKAFYMRQ 364 (460)
Q Consensus 290 ~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~-~~l~~~~e~~l~----~~~~~~~p~~I~~fP~~~~pf~~~~ 364 (460)
.+++++.++.+.+..+++++.+++++.|... +.++ .+++...|+++. +.++..+|+||+|||..++||++..
T Consensus 170 ~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~~~~~ 246 (345)
T 3a5y_A 170 QQAFLRYLEIDPLSADKTQLREVAAKLDLSN---VADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIS 246 (345)
T ss_dssp HHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTTBCBC
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHcCCcc---cCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChhhCCC
Confidence 5566666666656667777777777666430 2333 355555555553 2232237999999999999997654
Q ss_pred cCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc-------CCCcccH-HHHHHHHhcCCCCCcceeccHHHHH
Q 012612 365 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLV 436 (460)
Q Consensus 365 ~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-------~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~ 436 (460)
++++.++++|||++||+ ||+||++|+||+++|+++++.. |++++++ +|||+|++||+|||||||||+|||+
T Consensus 247 ~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLv 325 (345)
T 3a5y_A 247 TEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLV 325 (345)
T ss_dssp SSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHH
T ss_pred CCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHH
Confidence 44556889999999998 9999999999999999999874 8888888 6899999999999999999999999
Q ss_pred HHHcCCCCccccccccCCC
Q 012612 437 QFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 437 m~l~~~~~Irdv~~FPr~~ 455 (460)
|+++|.+||||||+|||+.
T Consensus 326 mll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 326 MLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHTCSSGGGGSSSCTTT
T ss_pred HHHcCCCcHheEecCCccc
Confidence 9999999999999999974
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=4e-68 Score=523.78 Aligned_cols=278 Identities=27% Similarity=0.466 Sum_probs=246.1
Q ss_pred ccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecC--------CCCCCCCceeeeccccCCcccccccc
Q 012612 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLDFFEKPAFLTVS 204 (460)
Q Consensus 133 ~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~eg~~~~F~v~~~~~~~~~~~L~~S 204 (460)
+||++|+|++ +++++++|++|++.+|+||.++||+||+||+|+++ .+|+ +++|.+ +|+++++||++|
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~---~~~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV---EIYGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---EETTEEEEECSC
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---EcCCCCEEeccC
Confidence 4799999999 99999999999999999999999999999999999 8888 888988 688999999999
Q ss_pred HHHHHH-HHhcCCCceEEEecccccCC--CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 012612 205 GQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 281 (460)
Q Consensus 205 pql~l~-l~~~g~~rvfeI~~~FR~E~--~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~ 281 (460)
||+|+| ++++|++|||+||||||+|+ +++.||+|||||+|+|++|.+++|+|+++|+|+++++..+.+....+
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~~---- 151 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGRE---- 151 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSC----
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhccc----
Confidence 999997 67888999999999999999 87789999999999999999999999999999999998775411000
Q ss_pred cccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCcccc
Q 012612 282 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 361 (460)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~ 361 (460)
+.. ++. |+|++|.||++ + ||. .+|+ ++.. . +|+||+||| +|||
T Consensus 152 -----------i~~-~~~-~~r~~y~ea~~---~----------~g~----~~er--~~~~-~-~P~~v~~~P---~pf~ 194 (294)
T 1nnh_A 152 -----------FPK-TKR-FEVFEYSEVLE---E----------FGS----DEKA--SQEM-E-EPFWIINIP---REFY 194 (294)
T ss_dssp -----------CCC-CSS-CEEEEHHHHHH---H----------TSS----HHHH--HHHC-S-SCEEEECCC---CCTT
T ss_pred -----------ccc-CCC-ceEeEHHHHHH---H----------hCC----hHhh--hhhc-C-CCEEEEcCC---hHHh
Confidence 100 233 89999999974 2 222 2233 2222 3 799999999 9999
Q ss_pred ccccCCccceeeeecccC-CceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCC-CCcceeccHHHHHHHH
Q 012612 362 MRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFA 439 (460)
Q Consensus 362 ~~~~~~~~~~~~fDl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~p-p~~G~giGidRL~m~l 439 (460)
++. |+..+++||++++ |++||+||++|+||++.|.++++..|++++.++|||+|++||+| ||||||||+|||+|++
T Consensus 195 ~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll 272 (294)
T 1nnh_A 195 DRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFI 272 (294)
T ss_dssp BCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHH
T ss_pred CCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHH
Confidence 876 6678999999999 99999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCccccccccCCCCCc
Q 012612 440 TGVENIRDAIPFPRTPGSV 458 (460)
Q Consensus 440 ~~~~~Irdv~~FPr~~~~~ 458 (460)
+|.+|||||++||++++++
T Consensus 273 ~g~~~Irdvi~Fp~~~~~~ 291 (294)
T 1nnh_A 273 VGAKHIAEVQPFPRIPGIP 291 (294)
T ss_dssp HTCSSGGGGCSSCCCTTSC
T ss_pred hCCCCHHHEEeccCCCCcc
Confidence 9999999999999999986
No 18
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.92 E-value=1.2e-24 Score=208.92 Aligned_cols=278 Identities=13% Similarity=0.069 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHhhh-----hCCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHH-Hh
Q 012612 146 AVARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAET-YA 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l-~~ 213 (460)
..++...+.+..+++||. +.|+++|..|+++....+ |...+-.++..+.-+..+.+.+|-..|||+ +.
T Consensus 3 ~~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~ 82 (330)
T 12as_A 3 TAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLG 82 (330)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHH
Confidence 346677889999999999 899999999999985442 222333332222337788999999999984 33
Q ss_pred -cCC---CceEEEecccccCCC-CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccch
Q 012612 214 -TAL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 288 (460)
Q Consensus 214 -~g~---~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~ 288 (460)
.+| +++|.-+++.|.++. .+.+|+-+|+|+|||......+..|+++++.++.++..+..... .+ ...
T Consensus 83 ~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~-~~--~~~----- 154 (330)
T 12as_A 83 QHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEA-AV--SEE----- 154 (330)
T ss_dssp HTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHH-HH--HHH-----
T ss_pred hCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHH-HH--HHH-----
Confidence 458 999999999997544 68999999999999999998899999999998888877653311 00 000
Q ss_pred hHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---ccccccc
Q 012612 289 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQN 365 (460)
Q Consensus 289 ~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~ 365 (460)
+ .+...+..++..++.+|+.+. ++..-.++.|..+...+ .+|||++.|..++ |.-.+..
T Consensus 155 y--~l~p~Lp~~i~fitsqeL~~~-------------YP~lt~keRE~~i~ke~---gaVFii~IG~~L~~g~~HD~RaP 216 (330)
T 12as_A 155 F--GLAPFLPDQIHFVHSQELLSR-------------YPDLDAKGRERAIAKDL---GAVFLVGIGGKLSDGHRHDVRAP 216 (330)
T ss_dssp S--CCCCCSCSSCEEEEHHHHHHH-------------SSSSCHHHHHHHHHHHH---SEEEEECCSSCCSSSCCSSCCCT
T ss_pred h--ccCcCCCCceEEEeHHHHHHH-------------cCCCChHHHHHHHHHhh---CCEEEEecCCccCCCCcCcCcCC
Confidence 0 011224456677788886433 23333345566666544 6999999997654 2222222
Q ss_pred CCccce---------eeeeccc-----CCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCCcceec
Q 012612 366 DDGRTV---------AAMDMLV-----PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGL 430 (460)
Q Consensus 366 ~~~~~~---------~~fDl~~-----~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G-~pp~~G~gi 430 (460)
+.+.+. .+.||++ .+..||.++++| .|++.+.++++..|.+....-+|.+++..| +|++.|.||
T Consensus 217 DYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGI 295 (330)
T 12as_A 217 DYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGI 295 (330)
T ss_dssp TTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEE
T ss_pred CCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccc
Confidence 334566 8899998 355799999999 899999999999998777777899888888 599999999
Q ss_pred cHHHHHHHHcCCCCcccccc
Q 012612 431 GFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 431 GidRL~m~l~~~~~Irdv~~ 450 (460)
|.+||+|+||+..+|-||++
T Consensus 296 GQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 296 GQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp EHHHHHHHHHTCSCGGGTSC
T ss_pred cHHHHHHHHhccchhheeec
Confidence 99999999999999999975
No 19
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.91 E-value=2e-25 Score=219.49 Aligned_cols=152 Identities=15% Similarity=0.205 Sum_probs=118.0
Q ss_pred CCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHH-----HHHHHHHHHHhhhhCCceee
Q 012612 96 QGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIWI 170 (460)
Q Consensus 96 ~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~EV 170 (460)
+++.+++||.|+++++||+|..++|++.+++ ...+++||||+|++.++++++. ++++.+.+|++|.+.||.||
T Consensus 21 ~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV 98 (290)
T 3qtc_A 21 ASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEI 98 (290)
T ss_dssp ---CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEE
Confidence 3456789999999999999987788876554 2366899999999999999999 99999999999999999999
Q ss_pred cCceeecCCCCC-----CCCceeeeccccCCcccccc--ccHHHHHHHH--h---cCCCceEEEecccccCCCCCCCCCC
Q 012612 171 SSPIITASDCEG-----AGEQFCVTTLDFFEKPAFLT--VSGQLNAETY--A---TALSNVYTFGPTFRAENSNTSRHLA 238 (460)
Q Consensus 171 ~TPiL~~~~~eg-----~~~~F~v~~~~~~~~~~~L~--~Spql~l~l~--~---~g~~rvfeI~~~FR~E~~~~~rHl~ 238 (460)
.||+|++..... ...+.. ....+++...+|+ +||++++.+. . .+..|+||||+|||+|+. +.+|++
T Consensus 99 ~Tp~l~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~~ 176 (290)
T 3qtc_A 99 KSPILIPLEYIERMGIDNDTELS-KQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLE 176 (290)
T ss_dssp CCCSEEETHHHHHTTCCTTSSGG-GGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCCS
T ss_pred ECCceeeHHHHHhcCCCcCCchh-hhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCcc
Confidence 999999864310 111111 1113557789999 9999997542 2 456899999999999976 678999
Q ss_pred ccceeeeeecCCC
Q 012612 239 EFWMIEPELAFAD 251 (460)
Q Consensus 239 EFt~lE~e~~~~~ 251 (460)
||||+|+++++.+
T Consensus 177 Ef~ql~~~~~g~~ 189 (290)
T 3qtc_A 177 EFTMLVFWQMGSG 189 (290)
T ss_dssp EEEEEEEEEESTT
T ss_pred hheEEEEEEEcCC
Confidence 9999999998754
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.72 E-value=2.4e-17 Score=161.31 Aligned_cols=188 Identities=17% Similarity=0.259 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC---CCC-C--CceeeeccccCCccccccc--cHHHHH--HHHhcCCC---
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC---EGA-G--EQFCVTTLDFFEKPAFLTV--SGQLNA--ETYATALS--- 217 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-~--~~F~v~~~~~~~~~~~L~~--Spql~l--~l~~~g~~--- 217 (460)
..++.+.+|++|.+.||.||.||.|.+... .|. . +.+.+. +..+...+|++ +|.+.. +.....-+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~--npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQV--FWLDGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTS--CEEETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEee--cccccchhhhhcChHHHHHHHHHHHhCCCCCE
Confidence 367899999999999999999999987321 111 1 222111 22335678884 566542 33333334
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhh
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 297 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 297 (460)
|+|++|+|||+|.. +..|.+||+|+|++....+.
T Consensus 151 rlfeiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~--------------------------------------------- 184 (288)
T 3dsq_A 151 RIFEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPL--------------------------------------------- 184 (288)
T ss_dssp EEEEEEEEECSCCS-SSCCCSEEEEEEEEEETCCG---------------------------------------------
T ss_pred EEEEEeeEEecCCC-CCCcCccEEEEEEEEEcCCc---------------------------------------------
Confidence 89999999999987 56789999999999854310
Q ss_pred cCCCcccCHHHHHHHHH----HHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 298 ERDFVQLSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 298 ~~~~~~i~~~ea~~~l~----~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
.+++.+++.++. +.|++ . || |..+ +..-.+.+
T Consensus 185 -----~~~f~elkg~le~ll~~LGl~--------------------------~------~~-----~~~~--s~e~~~~~ 220 (288)
T 3dsq_A 185 -----EERHQRLEDMARWVLEAAGIR--------------------------E------FE-----LVTE--SSVVYGDT 220 (288)
T ss_dssp -----GGHHHHHHHHHHHHHHHHTCC--------------------------C------CE-----EEEC--CCCSSCCC
T ss_pred -----hhhHHHHHHHHHHHHHHcCCC--------------------------C------cE-----EecC--CcceEEEE
Confidence 012222222222 11110 0 00 0000 00112456
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCCcceeccHHHHHHHHcCCCCcccccccc
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPFP 452 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G-~pp~~G~giGidRL~m~l~~~~~Irdv~~FP 452 (460)
+|++++|. ||++|+++.+..+. ++| .|||+|||||+|||+|+++|.+|||++....
T Consensus 221 ~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~~~ 277 (288)
T 3dsq_A 221 VDVMKGDL-ELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMARSL 277 (288)
T ss_dssp EEEEETTE-EEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSSCS
T ss_pred EEEEeCCE-EEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCCCc
Confidence 88999995 99999966544311 667 5799999999999999999999999987544
Q ss_pred C
Q 012612 453 R 453 (460)
Q Consensus 453 r 453 (460)
-
T Consensus 278 ~ 278 (288)
T 3dsq_A 278 S 278 (288)
T ss_dssp S
T ss_pred c
Confidence 3
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.61 E-value=4.1e-15 Score=148.64 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC--CC----C-------CCceeeecccc---------CCcccccc--ccHH
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC--EG----A-------GEQFCVTTLDF---------FEKPAFLT--VSGQ 206 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg----~-------~~~F~v~~~~~---------~~~~~~L~--~Spq 206 (460)
.+++++.||++|...||.||.+|.+.+... +. . .+.|.+..... -.....|| +||.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 356889999999999999999999976210 11 0 33454532100 01223344 5565
Q ss_pred HHHHHHhcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHH
Q 012612 207 LNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 266 (460)
Q Consensus 207 l~l~l~~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l 266 (460)
+. ++|..+- -|+|+||+|||+|+. +.+|+|||+|+|++.... |+.+++..++.+++.+
T Consensus 183 ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 183 QV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp HH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 53 6655543 379999999999876 467999999999999876 6778777777666554
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.51 E-value=4.9e-14 Score=138.35 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeec-------cccCCccccccccHHHH-HHHHhcC----CC
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT-------LDFFEKPAFLTVSGQLN-AETYATA----LS 217 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~-------~~~~~~~~~L~~Spql~-l~l~~~g----~~ 217 (460)
-.+++.+.||++|...||.||++|.+.+....-..-.|...+ .-+.+....||+|.-.. +++++.+ -.
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~ 133 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPV 133 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCc
Confidence 356789999999999999999999887631100000011000 01122345677666555 4777766 67
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~l 266 (460)
|+||||+|||+++. +.+|+|||+|||++++. .|+.+++..+|.++..+
T Consensus 134 riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 134 KIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 89999999998765 46799999999999988 47888888777777654
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.39 E-value=6.7e-13 Score=131.08 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC--CCC-----------CCceeeeccccCCccccccc--cHHHHHHHHhcCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC--EGA-----------GEQFCVTTLDFFEKPAFLTV--SGQLNAETYATAL 216 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~-----------~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~g~ 216 (460)
+++...||++|...||.|+.+|.+.+..- +.- .+.| |.+....||+ ||.+ ++.|..+-
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~------~i~e~~vLRThtsp~~-lr~l~~~~ 182 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTF------WFDTTRLLRTQTSGVQ-IRTMKAQQ 182 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCC------BSSSSCEECSCTHHHH-HHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccE------EeCCCceecccCCHHH-HHHHHhCC
Confidence 45788999999999999999998865321 111 0122 2233445654 5544 46666554
Q ss_pred C--ceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHHH
Q 012612 217 S--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 266 (460)
Q Consensus 217 ~--rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~l 266 (460)
. |+|++|+|||++ . +.+|+|+|+|+|..... .++.++...++.+++.+
T Consensus 183 ~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 183 PPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4 899999999997 4 67899999999976653 35666666666665554
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.13 E-value=2.4e-10 Score=118.52 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhhCCceeecC-ceeecC--------CC--CCC---CCceeeecccc--------------------
Q 012612 149 RVRNALAYATHKFFQENGFIWISS-PIITAS--------DC--EGA---GEQFCVTTLDF-------------------- 194 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~T-PiL~~~--------~~--eg~---~~~F~v~~~~~-------------------- 194 (460)
---+++...||++|...||.||.| |.+... .+ -.+ .|.|.+.....
T Consensus 225 HPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~ 304 (508)
T 3l4g_A 225 HPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGG 304 (508)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccc
Confidence 344678899999999999999875 766542 11 112 23466542100
Q ss_pred CC-------------ccccccccHHHH-HHHHhc-----CC--CceEEEecccccCCCCCCCCCCccceeeeeec
Q 012612 195 FE-------------KPAFLTVSGQLN-AETYAT-----AL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 248 (460)
Q Consensus 195 ~~-------------~~~~L~~Spql~-l~l~~~-----g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~ 248 (460)
++ ....||++---. ++.|.. +. -|+|+||+|||+|.. +.+|+|+|+|+|....
T Consensus 305 ~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~-DatHlpeFhQlegl~~ 378 (508)
T 3l4g_A 305 YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETL-DATHLAEFHQIEGVVA 378 (508)
T ss_dssp TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCC-CSSSCSEEEEEEEEEE
T ss_pred cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCC-CCCcCCeEEEEEEEEE
Confidence 00 234566544333 243321 22 379999999999987 5789999999998764
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.52 E-value=2e-07 Score=95.25 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhC--------CceeecC-ceeecC-CC-CCCCCceeeec-----c--ccCCccccccccHHHHH-HHH
Q 012612 152 NALAYATHKFFQEN--------GFIWISS-PIITAS-DC-EGAGEQFCVTT-----L--DFFEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 152 s~i~~~iR~ff~~~--------gF~EV~T-PiL~~~-~~-eg~~~~F~v~~-----~--~~~~~~~~L~~Spql~l-~l~ 212 (460)
+.+...||++|... ||.|+.+ |.+.+. .. +... ++..+ . -|.+...-||++---++ ++|
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~--~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~l 128 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLL--IPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLL 128 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGT--CCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhC--CCCCCCcccccceEEecCCeEEcCCCcHHHHHHH
Confidence 34666677777666 8999998 555541 11 1100 00000 0 13355566765433332 566
Q ss_pred hcCCCceEEEecccccCCCCCCCCCCccceeeeeecC
Q 012612 213 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 249 (460)
Q Consensus 213 ~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~ 249 (460)
..+..|+|++|.|||.+.. +..|.|+|.|+|--.-|
T Consensus 129 ~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 129 HAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp HTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred HHCCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 6677899999999999977 57899999999965543
No 26
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.40 E-value=1.6e-06 Score=90.46 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=34.4
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQ 264 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~ 264 (460)
|+|+||+|||.+...+..|.+||+|++..+... ++.+++..++.++.
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~ 255 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLR 255 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 799999999986541356999999999988763 45555555554443
No 27
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=5.9e-06 Score=86.15 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=30.9
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATA 261 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~ 261 (460)
|+|++|+|||++...+.+|.+||+|++.-+... ++.++...+|.
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ 264 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEG 264 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHH
Confidence 699999999986541246999999999887653 34444443333
No 28
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.20 E-value=3e-06 Score=87.98 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC----CC----CCCCceeeeccccCCccccccccH-HHHH---HH
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLDFFEKPAFLTVSG-QLNA---ET 211 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~L~~Sp-ql~l---~l 211 (460)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+.. ++ -..+.|.+. +--++.++|+... +..- +.
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~--d~~~~~~~LrPt~ee~t~~i~r~ 140 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIA--DRHKRELLYGPTNEEMITEIFRA 140 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEE--CTTCCEEEECSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEE--eCCCCeEEECCCChHHHHHHHHH
Confidence 345688899999999999999999999999998843 11 123456553 3346788888642 2221 22
Q ss_pred HhcC---C-CceEEEecccccC-CCCCC-CCCCccceeeeeecCCCHHHHHHHHHHH
Q 012612 212 YATA---L-SNVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACATAY 262 (460)
Q Consensus 212 ~~~g---~-~rvfeI~~~FR~E-~~~~~-rHl~EFt~lE~e~~~~~~~~~~~~~e~l 262 (460)
.+.. + -|+|+|++|||+| ..+.. --..||+|.|+|.-..+..++-..+..+
T Consensus 141 ~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp HCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 2222 2 4899999999999 43211 0237999999999766666554444433
No 29
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.16 E-value=2.4e-06 Score=87.14 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- .| ..+.|.+ +--+..++|+...+... .+.+..
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~---d~~~~~~~LrP~~~~~~~~~~~~~ 103 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT---SSENREYCIKPMNCPGHVQIFNQG 103 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEE---EETTEEEEECSCSHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeE---ecCCceEEEcCCCCHHHHHHHHhh
Confidence 346788899999999999999999999999998531 01 1234542 23367788887665543 333322
Q ss_pred ------C-CceEEEecccccCCC--CCC--CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENS--NTS--RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~--~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
+ -|+|+||+|||+|.+ ... | .-||+|.|+|. |.+.+++....++++.
T Consensus 104 ~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R-~reF~q~d~~~-f~~~~~~~~e~~e~i~ 161 (401)
T 1evl_A 104 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMR-VRGFTQDDAHI-FCTEEQIRDEVNGCIR 161 (401)
T ss_dssp CCBGGGCSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhhCChhhccccceecCCCCcccccccc-cCcEEecceEE-eCCHHHHHHHHHHHHH
Confidence 2 389999999999975 222 3 36999999995 6665555444444443
No 30
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.15 E-value=2.5e-06 Score=87.46 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--------CCCCCceeeeccccCCccccccccHHHHH-HHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~ 214 (460)
...-.+++..|.+.+++.+.+.||.||.||+|..... ....+.|.+ .+..+||+...+... .+...
T Consensus 168 ~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-----~~~~l~LrPt~e~~i~~~~~~ 242 (425)
T 2dq3_A 168 AGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC-----ERDNLYLIPTAEVPLTNLYRE 242 (425)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBC-----TTTCCEECSSTHHHHHGGGTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEe-----cCCeEEEcCCCcHHHHHHHHh
Confidence 3457788999999999999999999999999998542 111234433 256788886555433 22211
Q ss_pred ------CC-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 ------AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 ------g~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+ -|+|++++|||+|.+... + -.-||+|.|++. |.+-++..+..++++...
T Consensus 243 ~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~ 306 (425)
T 2dq3_A 243 EILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDA 306 (425)
T ss_dssp EEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHH
Confidence 12 479999999999975211 1 135999999976 555555655555555443
No 31
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.11 E-value=1.4e-05 Score=79.71 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC-------C---CCCCCceeeeccccCCccccccccHHHH-HHHHh
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-------C---EGAGEQFCVTTLDFFEKPAFLTVSGQLN-AETYA 213 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-------~---eg~~~~F~v~~~~~~~~~~~L~~Spql~-l~l~~ 213 (460)
-.-.+.+..|.+.+|+.|.+.||.||.||++.... + ....+.|.+. +--++.+.|+.-.-.. -++.+
T Consensus 33 P~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~--D~~g~~l~LRpd~T~~~aR~~~ 110 (344)
T 1z7m_A 33 LNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFI--KHEGQSITLRYDFTLPLVRLYS 110 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEE--CTTCCEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEE--CCCCCEEecCCCCcHHHHHHHH
Confidence 34577889999999999999999999999998732 1 1223556543 3346666776422222 24333
Q ss_pred c-C---CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 T-A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~-g---~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
. . --|.|+|++|||+|.+... +.-||+|+++|.-..+
T Consensus 111 ~~~~~~P~rl~y~g~vfR~e~p~~g-R~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 111 QIKDSTSARYSYFGKIFRKEKRHKG-RSTENYQIGIELFGES 151 (344)
T ss_dssp TCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred hcCCCCCeEEEEECcEEccCCCCCC-CcceeEEEEEEEEcCC
Confidence 2 2 2489999999999977433 5689999999986655
No 32
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.07 E-value=6.1e-06 Score=85.56 Aligned_cols=123 Identities=19% Similarity=0.137 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHhh-hhCCceeecCceeecCCC---CCC-----CCceeeeccccCCccccccccHHHHH-HHHh
Q 012612 144 FGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
.-.-.+++..|.+.+|+.+ .+.||.||.||+|..... -|. .+.|.++..+--+..++|+...+... .+..
T Consensus 60 lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~ 139 (460)
T 3uh0_A 60 LPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFG 139 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHH
Confidence 3456888999999999999 999999999999987431 121 23454432111246788876555443 3333
Q ss_pred cCC-------CceEEEecccccCCCC--CC--CCCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 214 TAL-------SNVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 214 ~g~-------~rvfeI~~~FR~E~~~--~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
... -|+|++++|||+|... .. | .-||+|.|++. |.+.+++.+.+++++..+..
T Consensus 140 ~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R-~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 140 KKDRSYNELPLRFSDFSPLHRNEASGALSGLTR-LRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDI 203 (460)
T ss_dssp TSCCBGGGCSEEEEECCEEECCCCTTTCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred hccccccccCeEEEEecCeeeCCCCCCCCCcee-eeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 321 3799999999999762 11 2 25999999996 66666666665555544433
No 33
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.04 E-value=1.6e-05 Score=83.70 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (648)
T 2odr_B 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (648)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
No 34
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.03 E-value=1.7e-05 Score=83.55 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (665)
T 2odr_A 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (665)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
No 35
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.03 E-value=4.5e-06 Score=85.55 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-----CCC-----CCceeeeccccCCccccccccHHHHH-HHHh-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-----EGA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----eg~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~- 213 (460)
.-.+++..|.+.+|+.|.+.||.||.||+|..... ++. .+.|.+. +--+..++|+.-..... ++++
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~--D~~g~~~~Lrp~~t~~~~r~~~~ 91 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFK--DKGDRSITLRPEGTAAVVRSYIE 91 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEEC--HHHHCCEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEE--cCCCCEEEeCCCChHHHHHHHHh
Confidence 45778899999999999999999999999988322 121 1345442 22245677774433322 3222
Q ss_pred ------cCC-CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 ------TAL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ------~g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
..+ -|+|++++|||+|.... -+.-||+|+|+|.-..+
T Consensus 92 ~~~~~~~~lP~r~~~~g~vfR~E~~~~-gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 92 HKMQGNPNQPIKLYYNGPMFRYERKQK-GRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp TTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred ccccccCCCCeEEEEecCEeecCCCcC-CCcccEEEeeEEEECCC
Confidence 122 48999999999997644 34679999999986654
No 36
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.02 E-value=1.8e-05 Score=83.49 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL 273 (685)
T 2odr_D 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (685)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
No 37
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.01 E-value=1e-05 Score=87.57 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCC-ccccccccHHHHH-HHHh
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~~ 213 (460)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| ..+.|.+. +--+ +.++|+.-..... ++.+
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~--d~~~~~~~~LrP~~~~~~~~~~~ 344 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM--QLDETESMVLRPMNCPHHMMIYA 344 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCE--EETTTEEEEECSSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeE--ecCCCeEEEeCCCCCHHHHHHHH
Confidence 4556889999999999999999999999999987531 01 12344432 2235 6778886554433 4443
Q ss_pred cC------C-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
.. + -|+|+||+|||+|.+. .+| .-||||.|+|. |.+.+++.+...+++.
T Consensus 345 ~~~~syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~ 404 (645)
T 1nyr_A 345 NKPHSYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVN 404 (645)
T ss_dssp TSCCBGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 32 1 3899999999999873 333 36999999998 6665555554444443
No 38
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.99 E-value=2e-05 Score=83.28 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL 273 (701)
T 2odr_C 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (701)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
No 39
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.98 E-value=2.2e-05 Score=81.69 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C------CCCceeeeccc--cCCccccccccHHH-----H
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G------AGEQFCVTTLD--FFEKPAFLTVSGQL-----N 208 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g------~~~~F~v~~~~--~~~~~~~L~~Spql-----~ 208 (460)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..- . + ..+.|.++... -.+.+++|+.-.+. |
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~ 120 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 120 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHH
Confidence 345788899999999999999999999999998542 1 1 22455553210 01467888865542 3
Q ss_pred HHHHhc--CC-CceEEEecccccCCCCCC--CCCCccceeeeeecCCCHHHHHHHHHHH
Q 012612 209 AETYAT--AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAY 262 (460)
Q Consensus 209 l~l~~~--g~-~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~l 262 (460)
.+.+.+ .+ -|+|||++|||+|..-.. | .-||+|.|++..+.+.++....+..+
T Consensus 121 ~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R-~REF~q~d~~~~~~~~~~ad~E~~~~ 178 (477)
T 1hc7_A 121 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLR-TSEFLWQEGHTAHATREEAEEEVRRM 178 (477)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HhhhhccccCCeeeEeecCEEeCCCCCCCcce-eEEEEEccEEEEeCCHHHHHHHHHHH
Confidence 332222 23 389999999999944112 3 25999999999888877776665555
No 40
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.97 E-value=2.4e-05 Score=83.38 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHHH-HHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~ 214 (460)
.-.-.+++..|.+.+|+.|.+.||.||.||++..... .| ..+.|.+. +--+..++|+.-.+-.. .+...
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~--d~~~~~~~LrP~~~~~~~~~~~~ 120 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLK--DRNDRDYILGPTHEETFTELIRD 120 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEE--CTTCCEEEECSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEe--cCCCCeEEEccccHHHHHHHHHh
Confidence 3456888999999999999999999999999988531 01 22455543 33467788875443321 22221
Q ss_pred ------CC-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHH
Q 012612 215 ------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATA 261 (460)
Q Consensus 215 ------g~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~ 261 (460)
.+ -|+|++++|||+|.. + +| .-||+|.|+|.-..+..++.+.++.
T Consensus 121 ~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~ 176 (572)
T 2j3l_A 121 EINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLDQSYRD 176 (572)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHH
T ss_pred hccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHHHHHHH
Confidence 12 389999999999976 2 32 3699999999866666665555444
No 41
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.96 E-value=3e-05 Score=79.79 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CC-CCCceeeeccccCCccccccccHHHHH-HHHhcC--
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA-- 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg-~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g-- 215 (460)
.-.+++..|.+.+|+-|.+.||.||.||++..... +. ..+.|.+. +--++.+.|+.-.-... ++.+..
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~--D~~g~~l~LrPd~t~~~aR~~~~~~~ 95 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFV--DKGGREVTLIPEATPSTVRMVTSRKD 95 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEE--CTTSCEEEECSCSHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEE--CCCCCEEEeCCCChHHHHHHHHhcCC
Confidence 45788899999999999999999999999988422 11 22456553 33466677774333322 433322
Q ss_pred --C-CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 216 --L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 216 --~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
+ -|.|+|+++||+|.+... ..-||+|.++|.-..+
T Consensus 96 ~~lP~rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 96 LQRPLRWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSD 133 (434)
T ss_dssp CCSSEEEEECCEEECCCCSCSS-CCSEEEEEEEEEESCC
T ss_pred CCCCeEEEEEcCeecCCCCCCC-CccceEEeeEEEEcCC
Confidence 1 389999999999977544 4579999999996655
No 42
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.92 E-value=9.4e-06 Score=83.95 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHHHHHHHhcC-
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQLNAETYATA- 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g- 215 (460)
....+++..+++.+++.+.+.||.||.||.|.+... ++.+ +.|.++. -+.++||....+...-.+...
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~---~~~~~~L~PTaE~~l~~l~~~~ 281 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG---DGDKKYLIATSEMPIAAYHRGR 281 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES---SSSCEEECSSTHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeec---CCcceEEeccCcHHHHHHHhcc
Confidence 557899999999999999999999999999998543 2221 4565532 156789988777765323222
Q ss_pred ------C-CceEEEecccccCCC-CC-C----CCCCccceeeeeecCCCHHH--HHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENS-NT-S----RHLAEFWMIEPELAFADLKD--DMACATAYLQYV 266 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~-~~-~----rHl~EFt~lE~e~~~~~~~~--~~~~~e~li~~l 266 (460)
+ =|+|++++|||+|-. .+ + --.-||+|.|++. |..-++ +.+..++++...
T Consensus 282 i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 282 WFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp EESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred ccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 1 369999999999963 11 1 1124999999985 555444 666666666543
No 43
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.90 E-value=3.4e-05 Score=78.99 Aligned_cols=103 Identities=20% Similarity=0.326 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-CC------CCceeeeccccCCccccccccHHHHH-HHHh-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~- 213 (460)
.-.+++..|.+.+|+-|.+.||.||.||++..... . |. .+.|.+. +--++.+.|+.-.-... ++.+
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~--D~~g~~l~Lrpd~t~~~ar~~~~ 92 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQ--DRGGRSLTLRPEGTAAMVRAYLE 92 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEE--CCCCCEEeeCCcchHHHHHHHHh
Confidence 35778899999999999999999999999987422 1 11 2456553 33466667764222222 3322
Q ss_pred cC------CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 TA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~g------~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. --|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 93 ~~~~~~~lP~rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 93 HGMKVWPQPVRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred ccccccCCCeEEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 22 2489999999999977544 4579999999986554
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.89 E-value=1e-05 Score=83.66 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CCCCceeeeccccCCccccccccHHHHH-HHHhc------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT------ 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~------ 214 (460)
-.-.+++..|.+.+++.+.+.||.||.||+|..... + |..+-|.-.....-+.++||+...+... .+...
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s~~ 269 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGK 269 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHHHHhCccCch
Confidence 456788899999999999999999999999998433 1 2222221100011246788887766654 33221
Q ss_pred CC-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 g~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+ -|+|++++|||+|..... + -.-||+|.|++ .|.+.++..+..++++...
T Consensus 270 ~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~ 327 (455)
T 2dq0_A 270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNA 327 (455)
T ss_dssp TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHH
T ss_pred hCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHH
Confidence 12 379999999999975211 0 12499999998 4666677777777666543
No 45
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.87 E-value=5.5e-05 Score=78.38 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC----CC-----CCCceeeeccc--cCCccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg-----~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+|+.|.+.||.||.||++.+... -| ..+.|.++... -.+.+++|+...+... .+.
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~ 114 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMM 114 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHH
Confidence 456788999999999999999999999999987431 12 22456554210 0156788886555433 433
Q ss_pred hcC------C-CceEEEecccccCCC-CCC--CCCCccc-eeeeeecCCCHHHHHHHHHHHHH
Q 012612 213 ATA------L-SNVYTFGPTFRAENS-NTS--RHLAEFW-MIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 213 ~~g------~-~rvfeI~~~FR~E~~-~~~--rHl~EFt-~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
+.- + -|+|||++|||+|.. ... | .-||+ |.|.+..+.+.++.....++++.
T Consensus 115 ~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R-~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 115 KLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIR-LREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp HTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTB-CSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCeEEEEEccEecCccCCCCCceE-eeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 321 2 389999999999976 112 2 24999 99999988887777665444443
No 46
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.86 E-value=1.4e-05 Score=82.70 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHHH-HHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g 215 (460)
-.-.+++..+++.+++.+.+.||.||.||.|.+... + | ..+.|.++.. +.++||.-..+.-.- ++..-
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~---~~~~~LipTaE~pl~~l~~~e 258 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG---EDEKYLIATSEQPISAYHAGE 258 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET---TEEEEECSSTHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC---CCeEEEeccccHHHHHHHhcc
Confidence 457889999999999999999999999999998543 1 1 1246666421 457788766666553 32221
Q ss_pred -CC--------ceEEEecccccCCCC------CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 216 -LS--------NVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 216 -~~--------rvfeI~~~FR~E~~~------~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+. |+|++++|||+|-.. +---.-||+|.|.+. |...++..+..++++...
T Consensus 259 i~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 259 WFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp EESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 22 599999999999641 101124999999986 666677777777766543
No 47
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.86 E-value=4e-05 Score=78.41 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CCC-----CceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~~-----~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... . |.. +.|.+ -+.+++|+...+... .++..-
T Consensus 163 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-----~d~~l~L~Pt~e~~~~~~~~~~ 237 (421)
T 1ses_A 163 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI-----AETDLYLTGTAEVVLNALHSGE 237 (421)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB-----TTSSEEECSSTHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEE-----cCCeEEEeecCcHHHHHHhccc
Confidence 457888999999999999999999999999987432 1 211 23333 145778887766654 232221
Q ss_pred ------C-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCC-HHHHHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFAD-LKDDMACATAYLQYV 266 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~-~~~~~~~~e~li~~l 266 (460)
+ -|+|++++|||+|-+... + -.-||+|.|++..-.. .++..+..++++...
T Consensus 238 ~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 238 ILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred ccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 2 379999999999953110 1 1259999999875444 477777666666543
No 48
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.86 E-value=3.4e-05 Score=79.06 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-CC------CCceeeeccccCCccccccccHHHHH-HHHh-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~- 213 (460)
.-.+++..|.+.+|+-|.+.||.||.||++..... . |. .+.|.+. +--++.+.|+.-.-... ++.+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~--D~~g~~l~Lrpd~t~~~aR~~~~ 93 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFE--DRNGDSLTLRPEGTAGCVRAGIE 93 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEE--CTTSCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEE--cCCCCEEEeCCCchHHHHHHHHh
Confidence 45778899999999999999999999999987422 1 21 2466654 33466677764222222 3222
Q ss_pred cC-----CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~g-----~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. --|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 94 ~~~~~~~P~rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 94 HGLLYNQEQRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp HTCSTTCCEEEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCC
T ss_pred cccccCCCeEEEEEcCEecCCCCCCC-ccceeEEeeEEEECCC
Confidence 22 2489999999999977544 4589999999986654
No 49
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.84 E-value=4.1e-05 Score=79.57 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-CC------CCceeeeccccC-CccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLDFF-EKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~-~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+|+.|.+.||.||.||++..... . |. .+.|.+. +-- ++.+.|+.-.-... +++
T Consensus 43 P~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~--D~~~g~~l~LRPd~t~~~ar~~ 120 (467)
T 4e51_A 43 PQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFV--DALNGENLTLRPENTAAVVRAA 120 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEE--CTTTCCEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEe--cCCCCCEEEeCcccHHHHHHHH
Confidence 345788999999999999999999999999987432 1 21 2456543 333 56677774332222 332
Q ss_pred hc-C-----CCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 213 AT-A-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 213 ~~-g-----~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
+. . --|.|++++|||+|.+... +.-||+|+++|.-..
T Consensus 121 ~~~~~~~~lP~r~~~~g~vfR~E~~~~g-R~ReF~Q~d~ei~g~ 163 (467)
T 4e51_A 121 IEHNMLYDGPKRLWYIGPMFRHERPQRG-RYRQFHQVGVEALGF 163 (467)
T ss_dssp HHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETC
T ss_pred HHcccccCCCEEEEEEccEEccCCCCCC-CcCceEEEEEEEEeC
Confidence 22 1 2489999999999987544 457999999998544
No 50
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.83 E-value=4.7e-05 Score=79.72 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CC--------CCCceeeeccc--cCCccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg--------~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+... .+ ..+.|.++... -.+.+++|+...+... .+.
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~ 146 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHH
Confidence 45677888999999999999 999999999998432 11 23466654210 0145788886555433 332
Q ss_pred h----c--CC-CceEEEecccccCCCCC-C--CCCCccc-eeeeeecCCCHHHHHHHHHHHHH
Q 012612 213 A----T--AL-SNVYTFGPTFRAENSNT-S--RHLAEFW-MIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 213 ~----~--g~-~rvfeI~~~FR~E~~~~-~--rHl~EFt-~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. . .+ -|+|++++|||+|..++ . | .-||+ |.|++..+.+.++..+.+++++.
T Consensus 147 ~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R-~REF~~q~e~~~~~~~~e~a~~e~~~~l~ 208 (501)
T 1nj1_A 147 ALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIR-VREITTFKEAHTIHATASEAEEQVERAVE 208 (501)
T ss_dssp HHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCEeeCCCCCCCCCce-eEEEeeeeeEEEEECCHHHHHHHHHHHHH
Confidence 2 1 12 37999999999997521 1 2 24999 99999988888777766655554
No 51
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.82 E-value=5.1e-05 Score=76.52 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-----C-CC-CCceeeeccccCCccccccc--cHHHHHHHHh----
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-----E-GA-GEQFCVTTLDFFEKPAFLTV--SGQLNAETYA---- 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----e-g~-~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~---- 213 (460)
-.+++..|.+.+|+.|.+.||.||.||++..... + .. .+.|.+. +--++.+.|+. .|++. ++++
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~--D~~g~~l~LRpd~T~~~a-R~~~~~~~ 112 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLF--DGGGDAVALRPEMTPSIA-RMAAPRVA 112 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCC--CCSSSCEEECSSSHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEE--CCCCCEEEECCcCHHHHH-HHHHhccc
Confidence 4678899999999999999999999999976321 1 12 3455432 23355566653 23332 2221
Q ss_pred --cCCCceEEEecccccCCC------CCCCCCCccceeeeeecCCC
Q 012612 214 --TALSNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 --~g~~rvfeI~~~FR~E~~------~~~rHl~EFt~lE~e~~~~~ 251 (460)
..--|.|++++|||+|.. ... +.-||+|+++|.-..+
T Consensus 113 ~~~~P~r~~y~g~vfR~e~~g~~~~~~~g-R~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 113 AGRTPIRWCYCERVYRRTDDPASLSWASG-KAAESTQVGIERIGEE 157 (373)
T ss_dssp TTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred cCCCCeEEEEEcceEccCCCcccccccCC-ccceeEEeeeEEECCC
Confidence 123689999999999976 333 4579999999985443
No 52
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.80 E-value=6.5e-05 Score=76.42 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CCCCCceeeeccccCCccccccc--cHHHHHHHHhc---
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT--- 214 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~--- 214 (460)
.-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+. +--++.+.|+. .|++. ++++.
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~--D~~g~~l~LRpd~T~~~a-R~~~~~~~ 98 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLL--DQQGNTLVLRPDMTAPIA-RLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEE--CTTSCEEEECSCSHHHHH-HHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEE--CCCCCEEEECCCCHHHHH-HHHHhhcc
Confidence 45778899999999999999999999999976432 1223455543 33455666663 22332 32222
Q ss_pred --CC-CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 215 --AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 215 --g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. -|.|++++|||+|.+... +.-||+|+++|.-..+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~g-R~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGG-KPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---C-CCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCC-CCCccEEeEEEEECCC
Confidence 22 489999999999977434 5589999999986554
No 53
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.80 E-value=4.4e-05 Score=79.33 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeec------CCCCCCCC-ceeeecccc-------------CCccccccc--
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGE-QFCVTTLDF-------------FEKPAFLTV-- 203 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~------~~~eg~~~-~F~v~~~~~-------------~~~~~~L~~-- 203 (460)
.-.+.+..+.+.+|+.|...||.||.||++.. + ++...+ .|.+...+. -+..+.|+.
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~ 102 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQ 102 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEEEEC----------------CCEEECSCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEecccccccccccccccCCCCCEEEeCCCC
Confidence 45778899999999999999999999999843 3 333345 676542210 145666763
Q ss_pred cHHHHHHHHhc-----C-CCceEEEecccccCCCCCCCCCCccceeeeeecCCC--HH----HHHHHHHHHHHHH
Q 012612 204 SGQLNAETYAT-----A-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMACATAYLQYV 266 (460)
Q Consensus 204 Spql~l~l~~~-----g-~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~--~~----~~~~~~e~li~~l 266 (460)
.+.+. ++++. . --|.|++++|||.|..... +.-||+|+++|.-..+ .. |++.++-++++.+
T Consensus 103 T~~~a-R~~~~~~~~~~~p~r~~y~g~vfR~e~~~~g-r~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 103 TVPLA-AYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp HHHHH-HHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHhcccccCCCeEEEEeccEEecCCCCCC-CcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 22222 22211 1 2389999999999977443 5579999999986542 12 4565555555443
No 54
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.69 E-value=0.00014 Score=75.25 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--CC-C----CCceeeeccccCCcccccccc--HHHHHHHHhc-C
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-A----GEQFCVTTLDFFEKPAFLTVS--GQLNAETYAT-A 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg-~----~~~F~v~~~~~~~~~~~L~~S--pql~l~l~~~-g 215 (460)
.-.+++..|.+.+|+.|...||.||.||++..... .+ + .+.|.+. +--++.+.|+.- |.+. ++.+. .
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~--D~~g~~l~LRpd~T~~~a-R~~~~~~ 117 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFI--TKGGHRVALRPEMTPSLA-RLLLGKG 117 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEE--CSSSCEEEECSCSHHHHH-HHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEE--cCCCCEEecCCcCHHHHH-HHHHhcC
Confidence 34678899999999999999999999999987543 11 1 1355443 334566666632 2322 33322 2
Q ss_pred -----CCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 216 -----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 216 -----~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
--|.|++++|||+|.+... +.-||+|+++|.-..
T Consensus 118 ~~~~~P~r~~y~g~vfR~e~~~~g-R~ReF~Q~g~ei~G~ 156 (456)
T 3lc0_A 118 RSLLLPAKWYSIPQCWRYEAITRG-RRREHYQWNMDIVGV 156 (456)
T ss_dssp TTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESC
T ss_pred cccCCCEEEEEeccEEecCCCCCC-CccceEEEEEEEEcC
Confidence 2479999999999987444 468999999998654
No 55
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.68 E-value=9e-05 Score=77.55 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC------CCCceeeeccc--cCCccccccccHHHHH-HH
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ET 211 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l 211 (460)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+... ++ ..+.|.++... -.+.+++|+...+... .+
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 4556888999999999999999999999999987432 11 12456554210 0145788876555432 33
Q ss_pred Hhc------CC-CceEEEecccccCCC-CCC-CCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 212 YAT------AL-SNVYTFGPTFRAENS-NTS-RHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 212 ~~~------g~-~rvfeI~~~FR~E~~-~~~-rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
... .+ -|+||+++|||+|-. ... --.-||+|.|.+....+.+++.+.++.++...
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVI 194 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHH
Confidence 222 22 379999999999943 111 01259999999997689888888888776443
No 56
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.65 E-value=0.00012 Score=76.80 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C---CCC-----Cceeeecccc--CCccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E---GAG-----EQFCVTTLDF--FEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e---g~~-----~~F~v~~~~~--~~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... + |.. +.|.++...- .+.+++|+...+... .+.
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~ 137 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAY 137 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHH
Confidence 346788899999999999999999999999977432 1 222 2343431100 023578865544322 222
Q ss_pred hc------CC-CceEEEecccccCCCCC-C--CCCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 213 AT------AL-SNVYTFGPTFRAENSNT-S--RHLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 213 ~~------g~-~rvfeI~~~FR~E~~~~-~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
.. .+ -|+|++++|||+|-..+ . | .-||+|.|.+..|.+.++..+.++.++..
T Consensus 138 ~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R-~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 138 AKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR-TREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp HHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HhhccccccCCeEEEEEcCeeeCCCCCCCCCcc-eeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 22 22 37999999999994321 1 2 24999999999999988888777776643
No 57
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.64 E-value=5.8e-05 Score=81.47 Aligned_cols=117 Identities=14% Similarity=0.140 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHH-HHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
..-.-.+++..|.+.+|+.+.+.||.||.||+|.+... + | ..+.|.+ +--+..++|+....... .+..
T Consensus 266 ~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~---d~~~~~~~LrP~~~~~~~~~~~ 342 (642)
T 1qf6_A 266 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT---SSENREYCIKPMNCPGHVQIFN 342 (642)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEE---EETTEEEEECSSSHHHHHHHHT
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceee---ecCCceEEecCCCCHHHHHHHH
Confidence 34567889999999999999999999999999998542 0 1 1234542 23356778886554433 3333
Q ss_pred cC------C-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
.. + -|+|++|+|||+|.+ +.+| .-||||.|++. |.+.+++.+..++++.
T Consensus 343 ~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~ 402 (642)
T 1qf6_A 343 QGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIR 402 (642)
T ss_dssp TSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 22 2 389999999999976 2222 35999999998 6665555444444443
No 58
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.64 E-value=0.00031 Score=73.13 Aligned_cols=121 Identities=15% Similarity=0.100 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CC-CceeeeccccCCccccccccHHHHH-HHHh
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AG-EQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~-~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
.....+++..|++.+++.+.+.||.||.||.|.+... + | .. +.|.++. --+.++||.-..+... .+..
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~--~~~~~l~L~PTaE~~~~~l~~ 292 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP--SRFEDLNLAGTAEVGLAGYFM 292 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT--TTSSSCEECSSHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec--CCCCeEEECCcCcHHHHHHHh
Confidence 4556888999999999999999999999999998432 1 1 12 5565531 1145789998777755 3322
Q ss_pred cC------C-CceEEEecccccCCC-----CCCCCCCccceeeeeecCCCH-HHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENS-----NTSRHLAEFWMIEPELAFADL-KDDMACATAYLQYV 266 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~-----~~~rHl~EFt~lE~e~~~~~~-~~~~~~~e~li~~l 266 (460)
.- + =|+|++++|||+|-. ++--=.-||+|.|++.--.+. ++..+..++++...
T Consensus 293 ~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~ 358 (501)
T 1wle_A 293 DHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQ 358 (501)
T ss_dssp TEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHH
Confidence 21 2 379999999999954 111112499999999744443 78888888877553
No 59
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.63 E-value=0.00025 Score=73.39 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCCCCceeeeccccCCccccccc--cHHHHHHHHhc-C
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT-A 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~-g 215 (460)
-.-.+++..|.+.+|+.|...||.||.||++.... ++...+.|... +--|+.+.|+. .+++- ++++. .
T Consensus 25 P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~--D~~g~~l~LRPd~T~~~a-R~~~~~~ 101 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLK--DQGGELLSLRYDLTVPFA-RYLAMNK 101 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBC--CCSSCCEEECSCSHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEE--CCCCCEEEeCCcCcHHHH-HHHHhcC
Confidence 44578889999999999999999999999996531 22222344332 33466666763 22222 32222 2
Q ss_pred --CCceEEEecccccCCCCCC-CCCCccceeeeeecC
Q 012612 216 --LSNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAF 249 (460)
Q Consensus 216 --~~rvfeI~~~FR~E~~~~~-rHl~EFt~lE~e~~~ 249 (460)
--|.|+|+++||.|..... -+.-||+|+++|.-.
T Consensus 102 ~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G 138 (464)
T 4g84_A 102 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 138 (464)
T ss_dssp CSCEEEEEEEEEECCCC------CCSEEEEEEEEEES
T ss_pred CCCceeEEEecceeccCCccccCccceeeecceeccC
Confidence 2378999999999965322 245699999999864
No 60
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.61 E-value=5.5e-05 Score=78.67 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCC-----CCceeeeccccCCccccccccHHH-----HHH-H
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLDFFEKPAFLTVSGQL-----NAE-T 211 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~L~~Spql-----~l~-l 211 (460)
.-.+++..|.+.+|+.|.+.||.||.||+|..... .|. .+.|.+ +--+..++|+.-.+. +.+ +
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~---d~~~~~l~LRP~~t~~i~~~~~~~~ 123 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF---DIEGHEFAVKPMNCPYHILLFLNEV 123 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE---EETTEEEEECSCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE---ecCCcEEEEccccHHHHHHHHHhhh
Confidence 35778899999999999999999999999988432 222 234544 233667888754432 222 2
Q ss_pred Hhc----CC-CceEEEecccccCCCC--CC--CCCCccceeeeeecCCCHHHHHHHHHHHH
Q 012612 212 YAT----AL-SNVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYL 263 (460)
Q Consensus 212 ~~~----g~-~rvfeI~~~FR~E~~~--~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li 263 (460)
... .+ -|+|++++|||+|... .. | .-||+|.|+|.- .+.++..+...+++
T Consensus 124 ~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R-~REF~Q~~~e~f-~~~~~~~de~~e~i 182 (471)
T 3a32_A 124 AKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR-VRGFTQDDAHII-VPGGRVIDVVYDVF 182 (471)
T ss_dssp HHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEEE-EEGGGHHHHHHHHH
T ss_pred hhccccccCCeEEeeccceeccCCCccccccee-EEEEEECCeEEE-cChHHHHHHHHHHH
Confidence 221 33 4899999999999662 11 2 359999999984 44333333333333
No 61
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.55 E-value=0.00011 Score=77.28 Aligned_cols=117 Identities=18% Similarity=0.303 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHHHHHhcC
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA 215 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g 215 (460)
...-.+++..+++.+++.+.+.||.||.||.|.+... + | ..+.|.++ +.++||.-..+...=.+...
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~-----~~~~~L~PT~E~~~~~l~~~ 345 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA-----ETDLYLTGTAEVVLNALHSG 345 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-----TTTEEECSSTHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-----CCCEEEccCCcHHHHHHHhc
Confidence 3557899999999999999999999999999987432 1 1 12355542 35788887776654322222
Q ss_pred -------C-CceEEEecccccCCCCCC------CCCCccceeeeeecCCC--HHHHHHHHHHHHHHH
Q 012612 216 -------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFAD--LKDDMACATAYLQYV 266 (460)
Q Consensus 216 -------~-~rvfeI~~~FR~E~~~~~------rHl~EFt~lE~e~~~~~--~~~~~~~~e~li~~l 266 (460)
+ =|+|++++|||+|..... --.-||+|.|.+. |.. .++..+..++++...
T Consensus 346 ~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 346 EILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp CEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred ccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 2 369999999999963111 1245999999985 554 347777777766553
No 62
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.55 E-value=0.00016 Score=75.29 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CC-CCCceeeeccc------cCCccccccccHHHHHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLD------FFEKPAFLTVSGQLNAE 210 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg-~~~~F~v~~~~------~~~~~~~L~~Spql~l~ 210 (460)
....+++..+++.+++.+.+.||.||.||.|.+... +. ..+.|.++... --+.++||....+...-
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~ 277 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIA 277 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHH
Confidence 457889999999999999999999999999987432 11 22456553210 01356889877766542
Q ss_pred -HHhcC------C-CceEEEecccccCCCCC-------CCCCCccceeeeeecCCCHH--HHHHHHHHHHHH
Q 012612 211 -TYATA------L-SNVYTFGPTFRAENSNT-------SRHLAEFWMIEPELAFADLK--DDMACATAYLQY 265 (460)
Q Consensus 211 -l~~~g------~-~rvfeI~~~FR~E~~~~-------~rHl~EFt~lE~e~~~~~~~--~~~~~~e~li~~ 265 (460)
+...- + =|+|++++|||+|-+.. -| .-||+|.|.+. |..-+ +..+..++++..
T Consensus 278 ~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~R-vhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~ 347 (522)
T 3vbb_A 278 ALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFR-VHQFEKIEQFV-YSSPHDNKSWEMFEEMITT 347 (522)
T ss_dssp TTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSS-CSEEEEEEEEE-EECSSTTHHHHHHHHHHHH
T ss_pred HHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcce-eeeeEEEEEEE-EeCCChHHHHHHHHHHHHH
Confidence 22111 1 26899999999996411 12 24999999985 54433 366666666544
No 63
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.49 E-value=0.00035 Score=73.45 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecC------CCCCCCCceeeeccccCCccccccc--cHHHHHHHHhcC
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS------DCEGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYATA 215 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~------~~eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~g 215 (460)
+-.-.++|..|.+.+|+.|...||.||.||++... .++.....|... +--|+.+.|+. .+.+- ++++..
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~--D~~g~~l~LRPd~T~~~a-R~~~~~ 153 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLK--DQGGELLSLRYDLTVPFA-RYLAMN 153 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBC--CTTSCCEEECSCSHHHHH-HHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEE--CCCCCEEEeCCcCcHHHH-HHHHhC
Confidence 44567889999999999999999999999999653 122222344332 33456666663 22221 333221
Q ss_pred ---CCceEEEecccccCCCCC-CCCCCccceeeeeecC
Q 012612 216 ---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAF 249 (460)
Q Consensus 216 ---~~rvfeI~~~FR~E~~~~-~rHl~EFt~lE~e~~~ 249 (460)
--|.|+||++||.|.... .=+.-||+|+++|.-.
T Consensus 154 ~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G 191 (517)
T 4g85_A 154 KLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 191 (517)
T ss_dssp TCSCEEEEEEEEEECCCC-------CCEEEEEEEEEES
T ss_pred CCCCceeEEEeceEeccCcccccCccceeeeeceeccC
Confidence 237899999999996522 1145799999999864
No 64
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.37 E-value=6.6e-05 Score=78.51 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHH-hhhhCCceeecCceeecCCC---CCC-----CCceeeeccc----------------------
Q 012612 145 GAVARVRNALAYATHK-FFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLD---------------------- 193 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~-ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~---------------------- 193 (460)
-.-.+++..|.+.+++ ++.+.||.||.||+|.+... -|. .+.|.++...
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~ 307 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPT 307 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccc
Confidence 4567788899999996 68999999999999987422 011 1344442100
Q ss_pred ------cCCccccccccHHHHH-HHHh----c--CCC-ceEE-EecccccCCCCCC---CCCCccceeeeeecCCCHHHH
Q 012612 194 ------FFEKPAFLTVSGQLNA-ETYA----T--ALS-NVYT-FGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDD 255 (460)
Q Consensus 194 ------~~~~~~~L~~Spql~l-~l~~----~--g~~-rvfe-I~~~FR~E~~~~~---rHl~EFt~lE~e~~~~~~~~~ 255 (460)
--+.++||+...+... .+.. . .+. |+|+ +++|||+| +.+. --.-||+|.|++. |.+.++.
T Consensus 308 ~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~s 385 (522)
T 2cja_A 308 KLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEEV 385 (522)
T ss_dssp HHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHHH
T ss_pred cccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHHH
Confidence 0135677775443321 1111 1 122 7999 99999999 4311 1235999999998 7888888
Q ss_pred HHHHHHHHHHHHHHH
Q 012612 256 MACATAYLQYVVRYI 270 (460)
Q Consensus 256 ~~~~e~li~~l~~~~ 270 (460)
.+..++++......+
T Consensus 386 ~ee~ee~i~~~~~~~ 400 (522)
T 2cja_A 386 LKCAEELHDRYMHIF 400 (522)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888884444444
No 65
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.21 E-value=0.0006 Score=71.41 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhh--hCCceeecCceeecCC
Q 012612 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~ 179 (460)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 457888999999999999 8999999999998753
No 66
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.06 E-value=0.0013 Score=63.41 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=58.8
Q ss_pred HHHHHH--HhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccc--cHHHHHHHHhc---CCCceEEEeccc
Q 012612 154 LAYATH--KFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT---ALSNVYTFGPTF 226 (460)
Q Consensus 154 i~~~iR--~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~---g~~rvfeI~~~F 226 (460)
+.+.+| +.|.+.||.||.||++.....-.. +.| . +--|+.+.|+. .|.+...-+.. .--|.|++|+||
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~---d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vf 80 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-L---DRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVY 80 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-E---ETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-C---CCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEE
Confidence 344455 999999999999999987544211 334 2 33456666662 33333221221 224899999999
Q ss_pred ccCCCCCCCCCCccceeeeeecCCC
Q 012612 227 RAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 227 R~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
|.|.+.. -||||+++|.-..+
T Consensus 81 R~e~~~~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 81 RYSGSDL----VAEYQLGLEKVPRN 101 (275)
T ss_dssp EEETTEE----EEEEEEEEEEESCC
T ss_pred ecCCCCC----CeeeEeCEEEecCC
Confidence 9998743 69999999986553
No 67
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.02 E-value=0.00045 Score=68.01 Aligned_cols=121 Identities=18% Similarity=0.133 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------Cceeeeccc----------------------c
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLD----------------------F 194 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~----------------------~ 194 (460)
...-+++..+.+.+++ ..+.||.||.||.|.+... ++.+ ..|.+.... .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 4567788899999999 8899999999999987433 2221 244442100 0
Q ss_pred CCccccccccHHHHH-HHHhc-C-C----CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHH
Q 012612 195 FEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 267 (460)
Q Consensus 195 ~~~~~~L~~Spql~l-~l~~~-g-~----~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~ 267 (460)
-+.++||....+..+ .+... | + -|+-.+++|||.|.+.+--..-+|+|.|+-. |.+.+++.+..|+++..+-
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae 218 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQ 218 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHH
Confidence 023577877666654 33332 1 1 3567799999999875555567999999876 6789999999998887654
No 68
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.98 E-value=0.0019 Score=66.31 Aligned_cols=109 Identities=11% Similarity=-0.031 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhh-hhCC-ceeecCceeecCCCCCCCCceeeeccccCCccccccc-cHHHHH----HHHhcC---
Q 012612 146 AVARVRNALAYATHKFF-QENG-FIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTV-SGQLNA----ETYATA--- 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff-~~~g-F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~-Spql~l----~l~~~g--- 215 (460)
.=..+|+.|.+..|..+ .++| +.||+||+......-|.-+.| . +||+. +-|-+. ..+-..
T Consensus 102 ~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~--------~--~~LRPeTaqg~~~nfk~~~~s~r~~ 171 (459)
T 3ikl_A 102 LGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAF--------R--GGLRENLLHGALEHYVNCLDLVNKR 171 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCC--------T--TB-CSCSHHHHHHHTTTTTGGGTTB
T ss_pred cHHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhh--------c--ceECCCCChhHHHHHhhhhhhcccc
Confidence 34678899998555444 5466 677999995443333333333 2 67775 333322 122211
Q ss_pred C-CceEEEecccccCC--CCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 216 L-SNVYTFGPTFRAEN--SNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 216 ~-~rvfeI~~~FR~E~--~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+ =++.|||+|||+|. + +.+| .-||||.|++. |.+-++..+..+.++...
T Consensus 172 LP~~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 172 LPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp SSEEEEEEEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred CCeEEEEEeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 1 15899999999994 2 3333 25999999985 676666666555555443
No 69
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.77 E-value=0.0029 Score=68.57 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHhhh-hCCceeecCceeec
Q 012612 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITA 177 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~ 177 (460)
-.-.+++..|.+.+|+.|. ..||.||.||+|++
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 4457889999999999998 56999999999986
No 70
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.74 E-value=0.023 Score=45.53 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=61.0
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec---c----CC---CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R---~----~g---~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+|+||.+ +..|.|.|+|.++- . .| ++.=+.|.|.|| .|.+++..+... . . ++
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 46777743 36799999998873 1 22 355577899996 589887764321 1 4 99
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCC
Q 012612 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~ 116 (460)
+||+|.|.|.+..-. +.+||.+.+...+.+|+
T Consensus 66 ~Gdvv~i~g~v~~~~---~~~el~~g~~~~i~k~~ 97 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGY---SGLEISVDNIGIIEKSL 97 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEEcC---CeEEEEECCCcEEEECC
Confidence 999999999987653 36999999988887763
No 71
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.70 E-value=0.019 Score=46.80 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=66.0
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeecc-------C---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~-------~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~ 79 (460)
..++|+||.. +..|.|.|+|.++-. . +++.=+.|.|.+| .|.+++..+.... .
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~----~-- 66 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI----D-- 66 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS----C--
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc----c--
Confidence 4567778854 267999999988732 2 2344578899986 4999877653221 4
Q ss_pred CCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCC
Q 012612 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~ 117 (460)
+.+||+|.+.|.++.... +.+||++.....+.+|..
T Consensus 67 l~~Gdvv~i~g~vk~~~~--g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 67 VGRGDYVRVRGYIREGYY--GGLECTANYVEILKKGEK 102 (105)
T ss_dssp CCTTCEEEEEEEEEECTT--SSEEEEEEEEEEEECCC-
T ss_pred cCCCCEEEEEEEEEEccC--CCEEEEeCCceEEEeccc
Confidence 999999999999988653 379999999999999863
No 72
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.60 E-value=0.018 Score=48.83 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=63.9
Q ss_pred eeeccccCCc--cCCC---CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch-hhHhccCCCCCcE
Q 012612 12 LKIVDVKGGP--NEGL---DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGAS 85 (460)
Q Consensus 12 ~~i~~l~~~~--~~~~---~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~ 85 (460)
++|++|.+.. ++.- ...=..|++.|+|.++.....-.-+.|.|+|| ..|.+....+...- ..... +..|++
T Consensus 9 vtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g~y 85 (132)
T 3kdf_D 9 CTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETY 85 (132)
T ss_dssp CCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTTCE
T ss_pred EEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCCCE
Confidence 6677776643 1110 12235689999999999887666678999997 14999887653211 11334 999999
Q ss_pred EEEEeeEeecCCCCceEEEEEeEEEEEec
Q 012612 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 86 V~V~G~v~~~~~~~~~~El~~~~i~ils~ 114 (460)
|.|.|.++.-. +...|.+..+..+..
T Consensus 86 VrV~G~l~~f~---g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 86 VKVAGHLRSFQ---NKKSLVAFKIMPLED 111 (132)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECSS
T ss_pred EEEEEEEEeEC---CEEEEEEEEEEEcCC
Confidence 99999998753 357788877765543
No 73
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.52 E-value=0.025 Score=49.60 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=62.0
Q ss_pred CCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhH-hccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 012612 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~ 105 (460)
+=+.|+|.|.|.+++...+...+.|-|+||. .|.|++..+... -... .. +..|++|.|.|.+..-. ++.+|.
T Consensus 46 PI~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr---~~rqI~ 119 (159)
T 3kf6_A 46 PIRWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFR---SEVELI 119 (159)
T ss_dssp EECEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSS---SSCEEE
T ss_pred EEEEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeC---CEEEEE
Confidence 3467999999999998877788899999983 689988765421 1112 24 89999999999997643 257899
Q ss_pred EeEEEEEec
Q 012612 106 VNKIVLVGK 114 (460)
Q Consensus 106 ~~~i~ils~ 114 (460)
++++.++..
T Consensus 120 ~~~i~~v~d 128 (159)
T 3kf6_A 120 AQSFEELRD 128 (159)
T ss_dssp EEEEEEECS
T ss_pred EEEEEECCC
Confidence 999988774
No 74
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.51 E-value=0.022 Score=48.59 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=64.8
Q ss_pred ceeeeccccCCcc----CCC---CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch--hhHhccCC
Q 012612 10 KKLKIVDVKGGPN----EGL---DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLI 80 (460)
Q Consensus 10 ~~~~i~~l~~~~~----~~~---~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~--~~~~~~~l 80 (460)
+-++|++|.+... +.- ...=..|++.|+|.+++......-+.|.|+|| .|.+....+.... ..... +
T Consensus 10 ~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG--~I~~~~W~~~~~~~~~~~~~--~ 85 (136)
T 4gop_B 10 RPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTG--QIEVRQWLDSSSDDSSKASE--I 85 (136)
T ss_dssp EECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSC--EEEEEEECC--------CCS--C
T ss_pred EeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCC--CEEEEEecccCCcccccccc--c
Confidence 3467788766321 101 12235799999999999876666678999997 4999887643211 12344 9
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEEEEe
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils 113 (460)
..|++|.|.|.+..-. +...|.+..+..+.
T Consensus 86 ~~g~yVrV~G~v~~f~---g~~qi~~~~ir~v~ 115 (136)
T 4gop_B 86 RNNVYVRVLGTLKSFQ---NRRSISSGHMRPVI 115 (136)
T ss_dssp CTTCEEEEEEEEEEET---TEEEEEESEEEECS
T ss_pred CCCCEEEEEEEEEEeC---CEEEEEEEEEEECC
Confidence 9999999999997643 35778877776543
No 75
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.40 E-value=0.0049 Score=63.58 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHh-h-hhCCceeecCceeecCCC-CCC-------CCceeee------------c--cccCCccccc
Q 012612 146 AVARVRNALAYATHKF-F-QENGFIWISSPIITASDC-EGA-------GEQFCVT------------T--LDFFEKPAFL 201 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~f-f-~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~------------~--~~~~~~~~~L 201 (460)
.=.+++..|.+.+++. + .+.|+.||.||+|.+..- .+. ++.+.-. . .+.++.++||
T Consensus 60 ~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~L 139 (454)
T 1g5h_A 60 LGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKL 139 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEE
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceee
Confidence 3578889999988876 4 589999999999988542 221 1111100 0 0123456778
Q ss_pred cc--cHHHH---HHHHhc---CC-CceEEEecccc---cCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 202 TV--SGQLN---AETYAT---AL-SNVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 202 ~~--Spql~---l~l~~~---g~-~rvfeI~~~FR---~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
+. +|-.+ +..+.. -+ =+++|||+||| ||-+ + +| .-||||.|++. |.+.++..+..+.++..
T Consensus 140 RPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 140 RATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRH 216 (454)
T ss_dssp CSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeCHhhHHHHHHHHHHH
Confidence 74 33333 333322 23 26999999999 6854 2 44 45999999995 77888777666666554
Q ss_pred HH
Q 012612 266 VV 267 (460)
Q Consensus 266 l~ 267 (460)
..
T Consensus 217 ~~ 218 (454)
T 1g5h_A 217 RL 218 (454)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 76
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.95 E-value=0.03 Score=46.12 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=57.8
Q ss_pred CCCEEEEEEEEeee---c----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCC
Q 012612 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (460)
Q Consensus 28 ~~~~V~v~GwV~~~---R----~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (460)
.|+.+.+.|.|.++ | +. +.+..+.|.|.+| .|.+.+..+... .... +.+|++|.|+|.+....
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~- 87 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGG- 87 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCC-
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEccc-
Confidence 46778999999988 2 12 4688899999996 599988865421 2345 99999999999986531
Q ss_pred CCceEEEEEeEEEEEecC
Q 012612 98 SKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 98 ~~~~~El~~~~i~ils~~ 115 (460)
-.+.++|.+.+...+.++
T Consensus 88 f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 88 FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp SSSSCEEEECTTCCEEEE
T ss_pred cCCeEEEEECCCceEEEC
Confidence 123588877665555554
No 77
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.75 E-value=0.029 Score=59.65 Aligned_cols=112 Identities=8% Similarity=-0.016 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCC--C------CCCCCceeeeccccCCc-cccccccHHHHH-HHHhcCC----
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASD--C------EGAGEQFCVTTLDFFEK-PAFLTVSGQLNA-ETYATAL---- 216 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~--~------eg~~~~F~v~~~~~~~~-~~~L~~Spql~l-~l~~~g~---- 216 (460)
.+++...+|+.|...||.|+.|+.+++.. . ....+.+.+. |-... -..||+|-=--+ +.+....
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~--NPis~e~svmRtsLlpgLL~~l~~N~~~~~ 470 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHIS--NPKTAEFQVARTTLLPGLLKTIAANRKMPL 470 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBS--SCSSGGGSEECSCSHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEc--CCCchhHhHHHHHHHHHHHHHHHHHhcCCC
Confidence 34568889999999999999999998742 1 1112334432 22222 246777654433 5443221
Q ss_pred -CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHH
Q 012612 217 -SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 265 (460)
Q Consensus 217 -~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~ 265 (460)
-|+||+|+|||.++. ..+|.+|+.|+..-+... ++.++...++.++..
T Consensus 471 ~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 471 PLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp CEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 269999999997654 457889999999766543 577777777766554
No 78
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.72 E-value=0.05 Score=59.90 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCC-C---CCCC-ceeeeccccCC-ccccccccHHHHH-HHHh----cCCC-
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDC-E---GAGE-QFCVTTLDFFE-KPAFLTVSGQLNA-ETYA----TALS- 217 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e---g~~~-~F~v~~~~~~~-~~~~L~~Spql~l-~l~~----~g~~- 217 (460)
-..++.+.+|+.|...||.|+.|..+++... + +..+ .+.+. |-.. .-..||+|-=--+ +.+. .+..
T Consensus 494 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~--NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~ 571 (795)
T 2rhq_B 494 DRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLL--MPMSEAHATLRQSLLPHLIEATAYNVARKNKD 571 (795)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECS--SCSCTTSSEECSCSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEc--CCCchhhhhhhhccHHHHHHHHHHHhcCCCCC
Confidence 3456788899999999999999999987532 1 1123 24442 2222 2235776654432 4332 3333
Q ss_pred -ceEEEecccccCCCCCCCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 218 -NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 -rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
|+||+|+|||.++. ...| +||+|+..-++. .|+.++...+|.++..+
T Consensus 572 vrlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 572 VRLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 79999999996543 2256 899999965543 58999999999998876
No 79
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.68 E-value=0.033 Score=45.61 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=59.2
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEee
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (460)
++++++.+- ..+..|++.|.|.+.-..-+ ...+|++| .|+|-++.+. |.- .. +++++-|.+.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG--~I~VeId~~~--w~g-~~--v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDDL---YVFKDASG--TINVDIDHKR--WNG-VT--VTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEECCGGG--STT-CC--CCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCCe---EEEECCCc--cEEEEEChhh--cCC-cc--cCCCCEEEEEEE
Confidence 567777653 56788999999976654433 35799996 4887765432 211 23 999999999999
Q ss_pred EeecCCCCceEEEEEeEEEEEec
Q 012612 92 VVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 92 v~~~~~~~~~~El~~~~i~ils~ 114 (460)
|.+.-. ..||.|..|++|.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 997532 47999999988753
No 80
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.38 E-value=0.033 Score=51.28 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC-CCC-----CCceeeeccccC-CccccccccHHHHH-HHHhc----CCC--
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLDFF-EKPAFLTVSGQLNA-ETYAT----ALS-- 217 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~-~~~~~L~~Spql~l-~l~~~----g~~-- 217 (460)
.++...+|+.|...||.||-|-.+++... +.. .+...+. |-. ..-..||+|-=--+ +.+.. +..
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~--NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLL--NPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBS--SGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEe--CCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 46778899999999999999999987432 111 1222221 222 22346777754443 54433 333
Q ss_pred ceEEEecccccCCCCCC-----CCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~-----rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
|+||||+||+.++.+.. .+..|..+|-.-++. .|+.++...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 79999999997653211 233577788765544 25667777777766554
No 81
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=94.99 E-value=0.17 Score=50.82 Aligned_cols=77 Identities=13% Similarity=0.257 Sum_probs=60.9
Q ss_pred CCCEEEEEEEEeee-cc-CCCeEEEEEEcCCCccceEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 012612 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (460)
Q Consensus 28 ~~~~V~v~GwV~~~-R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~El 104 (460)
....++|.|.|.+. +. .|+-+|+.|.|++ ..|.|++=.....|.. ++. |.+||.|.|.|.++. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~--~~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKF--GSVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETT--EEEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCC--CEEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--EE
Confidence 45789999999988 55 4888999999986 4599987553333544 566 999999999999865 2 88
Q ss_pred EEeEEEEEecC
Q 012612 105 KVNKIVLVGKS 115 (460)
Q Consensus 105 ~~~~i~ils~~ 115 (460)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999998775
No 82
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=94.95 E-value=0.16 Score=48.49 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=65.9
Q ss_pred ceeeeccccCCcc--CCCCCCC---CEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch-hhHhccCCCCC
Q 012612 10 KKLKIVDVKGGPN--EGLDRVG---LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (460)
Q Consensus 10 ~~~~i~~l~~~~~--~~~~~~~---~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~-~~~~~~~l~~g 83 (460)
+-++|++|.+... +.-...+ ..|++.|+|.++...+...-+.|.|++| ..|.+.+..+...- ..... +..|
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G 123 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 123 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCC
Confidence 4478888887521 1011112 4699999999998776666678999997 14888887643210 11234 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEec
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~ 114 (460)
++|.|.|.+..=. +...|.+..|..+..
T Consensus 124 ~yVrV~G~v~~f~---g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 124 TYVKVAGHLRSFQ---NKKSLVAFKIMPLED 151 (270)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEECSC
T ss_pred CEEEEEEEEEecC---CeeEEEEEEEEecCC
Confidence 9999999998653 257778777775554
No 83
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=94.40 E-value=0.32 Score=39.65 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=61.3
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeecc--C-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA--Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~--~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
+|+||.. .++.|.+.|+|.++-. . +....+.|.|.||. |-+++..+. .+.. +..|++|.|+
T Consensus 7 kI~dl~~--------~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~ 70 (109)
T 2kbn_A 7 KIVDIVE--------NGQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLR 70 (109)
T ss_dssp CTTTCCS--------TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEE
T ss_pred EHHHCCC--------CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEE
Confidence 4666643 2567999999998853 2 23445788999974 888887632 1234 9999999999
Q ss_pred -eeEeecCCCCceEEEEEeEEEEEecCCCC
Q 012612 90 -GNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (460)
Q Consensus 90 -G~v~~~~~~~~~~El~~~~i~ils~~~~~ 118 (460)
|.+..-+ +.++|.+.+...+.+....
T Consensus 71 n~~v~~~~---G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 71 SVVVGEYN---DRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp EEEEEEET---TEEEEEECSSSEEEECSSC
T ss_pred EEEEEEEC---CEEEEEECCceEEEECCCc
Confidence 6776643 3699999887777665543
No 84
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.01 E-value=0.11 Score=47.61 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC-CCC-----CCceeeeccccCCc-cccccccHHHHH-HHH----hcCCC--
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLDFFEK-PAFLTVSGQLNA-ETY----ATALS-- 217 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~~~-~~~L~~Spql~l-~l~----~~g~~-- 217 (460)
.++.+.+|+.|...||.||-|-.+++... +.. .+...+. |-... -..||+|-=--+ +.+ ..+..
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~--NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELM--NPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCS--SBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEec--CCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 46778899999999999999999987432 111 1112221 22222 346777754433 433 34554
Q ss_pred ceEEEecccccCCCCC-----CCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNT-----SRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~-----~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
|+||||+||+.++... ..+..|..++-.-++. .|+.++...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 7999999999754210 1234577788765543 47888888888877664
No 85
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=94.00 E-value=0.54 Score=38.07 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=61.4
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec-----cCCC---eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R-----~~g~---~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
.+|+||... ...|.+.|.|.++- +.|+ +.=+.|.|.|| .|.+.+..+ . +.+|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG--~I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA--RIRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC--EEEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC--eEEEEEEcC--------c--cCCC
Confidence 457777542 34577888877652 2343 56677899996 488877764 2 8899
Q ss_pred cEEEEE-eeEeecCCCCceEEEEEeEEEEEecCCCCCCCC
Q 012612 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (460)
Q Consensus 84 ~~V~V~-G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~ 122 (460)
|+|.|. |.+..- .+.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~---~g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQF---NGYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEE---TTEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEE---CCEEEEEECCcEEEEECCCCCccc
Confidence 999999 777653 246999998877777776556664
No 86
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=93.52 E-value=0.56 Score=42.96 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEeeeccCC--------CeEEEEEEcCCCcc-ceEEEEeCCccchhh----HhccCCCCCcEEEEEeeEee
Q 012612 28 VGLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~g--------~~~Fv~lrD~~~~~-~iQvv~~~~~~~~~~----~~~~~l~~g~~V~V~G~v~~ 94 (460)
+=+.|.|.|.|...+..- ..+|+.|-|.||.. .|.|.++... +.. +.. ...|.+|.|+|.+..
T Consensus 84 PI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~--~~~~gl~l~~--~~~G~iV~VkG~i~~ 159 (220)
T 3kf8_A 84 PVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ--FKEVGLTLDK--KNYGKIVELEGEIYN 159 (220)
T ss_dssp EECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH--HHTTTCCTTS--CCTTCEEEEEEEEEE
T ss_pred ccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH--hhccCccccc--cCCCeEEEEEEEEEe
Confidence 347799999999997542 46899999999852 4666555321 111 122 558999999999986
Q ss_pred cCC-----CCceEEEEEeEEEEEecC
Q 012612 95 SQG-----SKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 95 ~~~-----~~~~~El~~~~i~ils~~ 115 (460)
-.. +.-.-||.|+++.+++..
T Consensus 160 ~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 160 WYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred eccccccccccceEEEEEEEEEeccC
Confidence 421 111469999999999875
No 87
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=92.79 E-value=0.55 Score=38.74 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=57.7
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeee---c----cCC--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R----~~g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
+|+||... ...|.+.|.|.++ | +.| ...=+.|.|.|| .|.+.+..+.. .. +..|
T Consensus 4 ~I~dL~~~--------~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG--~I~~tlW~~~~-----~~--~~~G 66 (119)
T 1o7i_A 4 KVGNLKPN--------MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKHA-----GS--IKEG 66 (119)
T ss_dssp CGGGCCTT--------CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGGT-----TC--CCTT
T ss_pred EHHHCcCC--------CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC--EEEEEEECChh-----hc--CCCC
Confidence 46677442 2358888999877 4 224 355567799996 48888875432 24 8999
Q ss_pred cEEEEE-eeEeecCCCCceEEEEEeEEEEEecCC
Q 012612 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 84 ~~V~V~-G~v~~~~~~~~~~El~~~~i~ils~~~ 116 (460)
++|.|+ |.+..-+ +.++|.+.+...+.++.
T Consensus 67 ~vv~i~~g~v~~~~---g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 67 QVVKIENAWTTAFK---GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp CEEEEEEEEEEEET---TEEEEEECTTCEEEECC
T ss_pred CEEEEEeEEEEEeC---CEEEEEECCCEEEEEcC
Confidence 999999 8886642 46899988765555553
No 88
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=92.73 E-value=0.38 Score=40.06 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
..|+.|++-|+|.+++..|+.+-+.-.|+ +.++|.++.... ...+.+|.|.|+|.. ..+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~l~s~Dg---~~Vtv~l~~p~~---------~~l~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFILSDGEG---KNGTIELMEPLD---------EEISGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEEEECTTS---CEEEEECSSCCS---------SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCC---------cccCcEEEEEEEECC------CCeEEE
Confidence 68999999999999997777554433444 357777665221 222559999999974 245677
Q ss_pred eEEEEEecC
Q 012612 107 NKIVLVGKS 115 (460)
Q Consensus 107 ~~i~ils~~ 115 (460)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 766666543
No 89
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=91.22 E-value=0.91 Score=49.76 Aligned_cols=107 Identities=10% Similarity=-0.026 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhhhCCceeecCceeecCCC----CCCCCceeeeccccCC-ccccccccHHHHH-HHHh----cC-C-
Q 012612 149 RVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETYA----TA-L- 216 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~~----~g-~- 216 (460)
.-..++.+.+|+.|...||.|+-|-.+++... ....+.+.+. |-.. .-..||+|-=--+ +.+. .+ .
T Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~--NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~ 566 (785)
T 1b7y_B 489 EAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLL--NPLAPEKAALRTHLFPGLVRVLKENLDLDRPE 566 (785)
T ss_dssp THHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEES--SCSSTTSSEECSCSHHHHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEc--CCCchhhhhhhhhhHHHHHHHHHHHhhcCCCC
Confidence 34567888999999999999999888887531 1123334443 2222 2235776644432 4332 24 3
Q ss_pred -CceEEEecccccCCCCCCCCCCccceeeeeecC------------CCHHHHHHHHHHHHHHH
Q 012612 217 -SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 217 -~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~------------~~~~~~~~~~e~li~~l 266 (460)
-|+||+|+||| + +|+.|+..-+.. .|+.++...+|.++..+
T Consensus 567 ~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 567 RALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp CEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 37999999999 2 689999876654 47999999999998876
No 90
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=90.97 E-value=0.42 Score=39.16 Aligned_cols=92 Identities=10% Similarity=0.159 Sum_probs=62.1
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee---c------cCCCeEEEEEEcCCCccceEEEEeCCccchhhH-hccCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R------AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLI 80 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R------~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~-~~~~l 80 (460)
.+.|++|... ....+|.|||.++ | ..|++.=++|.|.+| .|++++..+.. +.+ .. |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~f~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFA--TKFNEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHH--HHHHHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHH--HHHHhh--c
Confidence 4667788653 2247899999865 2 136778888999997 59998876432 112 24 9
Q ss_pred CCCcEEEEEe-eEeecCCC----CceEEEEEeEEEEEecCC
Q 012612 81 TTGASIWIQG-NVVPSQGS----KQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 81 ~~g~~V~V~G-~v~~~~~~----~~~~El~~~~i~ils~~~ 116 (460)
..|+++.+++ .|+..... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 9999999986 44443221 347888887777777764
No 91
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.76 E-value=0.55 Score=38.64 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=43.7
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
+.|+.|++-|+|.+.+. +. +.|....+ +.|+|.++... . +..+..|.|.|+|.....+-|...|.+
T Consensus 16 ~~g~~VrivGkV~~~~g--~~--~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG--NT--LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET--TE--EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC--CE--EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999985 32 34664443 35676665432 2 556899999999975422212355555
Q ss_pred e
Q 012612 107 N 107 (460)
Q Consensus 107 ~ 107 (460)
.
T Consensus 82 ~ 82 (114)
T 4gop_A 82 F 82 (114)
T ss_dssp C
T ss_pred E
Confidence 3
No 92
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=88.95 E-value=1 Score=37.11 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=40.1
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCC
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~ 121 (460)
|+|++..+.. +.++. ++.|+-|.|+|.+.........++|+++.|+.|+.....-|+
T Consensus 49 i~vv~~Gk~A--E~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLA--LLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHH--HHHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHH--Hhhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 7788776432 22445 999999999999987533225799999999999876544454
No 93
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=87.02 E-value=0.59 Score=53.40 Aligned_cols=80 Identities=10% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCCEEEEEEEEeeeccC-----CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCce
Q 012612 27 RVGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~-----g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (460)
..|+.|+|+|.|.+++.. +.++|+.|.|.+|. +.+++-++. |+..+. .|..+.+|.|+|+|.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~--~~~~~~-~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRA--YEGVSP-KLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHH--HHHHHH-HhccCCEEEEEEEEEECC----C
Confidence 357889999999988752 24999999999964 888877653 444432 489999999999998643 3
Q ss_pred EEEEEeEEEEEecC
Q 012612 102 VELKVNKIVLVGKS 115 (460)
Q Consensus 102 ~El~~~~i~ils~~ 115 (460)
+.|.+.++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888766554
No 94
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=85.49 E-value=4.5 Score=34.44 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 012612 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (460)
Q Consensus 26 ~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~ 105 (460)
+..|+.|++-|+|.+.-..|+.+ .+....+ +.|+|.++... . -..+-+|.|.|+|.. ..+|.
T Consensus 40 ~fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~~~~~~VEViG~V~~------~~tI~ 101 (142)
T 2pi2_E 40 QFIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATIL 101 (142)
T ss_dssp GSTTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEE
T ss_pred hhCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--ccCCCEEEEEEEECC------CCcEE
Confidence 36899999999999984445543 4555444 35666654321 1 234779999999954 23455
Q ss_pred EeEEEEEec
Q 012612 106 VNKIVLVGK 114 (460)
Q Consensus 106 ~~~i~ils~ 114 (460)
+..+.-++.
T Consensus 102 ~~~~~~fGd 110 (142)
T 2pi2_E 102 CTSYVQFKE 110 (142)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 665555544
No 95
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=82.48 E-value=9.5 Score=32.14 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=56.7
Q ss_pred eeeccccCCcc--CCCCCCCCEEEEEEEEe--ee-cc--CCCeEEEEEEc-CCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 12 LKIVDVKGGPN--EGLDRVGLMIVVAGWVR--TL-RA--QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 12 ~~i~~l~~~~~--~~~~~~~~~V~v~GwV~--~~-R~--~g~~~Fv~lrD-~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
.+..|+..... +.....++.++|.|.|. ++ |. ...+.|. |.| +. ..|.|....-.++ +.+.|
T Consensus 13 ~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~~v~V~Y~GilPD-------lFrEG 82 (136)
T 1j6q_A 13 YTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLG--GEILVTYDDLLPD-------LFREG 82 (136)
T ss_dssp ECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTC--CCEEEEECSCCTT-------SCCSS
T ss_pred eCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCC--CEEEEEECCCCCc-------cccCC
Confidence 45667765310 00135789999999996 44 43 2458875 788 54 4688887765432 37889
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCC
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p 120 (460)
.-|.|+|++... + .+.++ +||.||+..|.
T Consensus 83 qgVVa~G~l~~~--g----~F~A~--eVLaKhdekY~ 111 (136)
T 1j6q_A 83 QGIVAQGVLGED--G----KLAAT--EVLAKHDENYM 111 (136)
T ss_dssp SEEEEEEEECST--T----SEEEE--EEECCC-----
T ss_pred CeEEEEEEECCC--C----eEEEE--EEEecCCCCCC
Confidence 999999999643 1 13444 58999987643
No 96
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=82.04 E-value=10 Score=32.00 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=54.1
Q ss_pred CCCCCEEEEEEEEe--ee-cc--CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCc
Q 012612 26 DRVGLMIVVAGWVR--TL-RA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (460)
Q Consensus 26 ~~~~~~V~v~GwV~--~~-R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (460)
...++.++|.|.|. ++ |. ...+.|. |.|+. ..|.|....-.++ +.+.|.-|.|+|++...
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~--~~v~V~Y~GilPD-------lFrEGqgVVa~G~l~~~----- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFT-IYDAE--GSVDVSYEGILPD-------LFREGQGVVVQGELEKG----- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEE-EECSS--CEEEEEEESCCCT-------TCCTTSEEEEEEEECSS-----
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEE-EEeCC--cEEEEEECCCCCc-------cccCCCeEEEEEEECCC-----
Confidence 35789999999998 34 43 2357775 78975 4688887765432 37889999999999642
Q ss_pred eEEEEEeEEEEEecCCCCCC
Q 012612 101 KVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 101 ~~El~~~~i~ils~~~~~~p 120 (460)
-.+.++ +||.||+..|.
T Consensus 90 -g~F~A~--eVLAKhdekYm 106 (136)
T 1sr3_A 90 -NHILAK--EVLAKHDENYT 106 (136)
T ss_dssp -SEEEES--SCBCCSCCCCC
T ss_pred -CeEEEE--EEEecCCCCCC
Confidence 124555 48999987643
No 97
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=80.19 E-value=3 Score=38.61 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=61.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee---cc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+.|++|... ...++|.|||.++ |. .|++.=++|.|.+| .|++++..+.. +.+. ..|.
T Consensus 8 ~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~~~-~~l~ 74 (246)
T 1jmc_A 8 VVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQV--DKFF-PLIE 74 (246)
T ss_dssp BCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHH--HHHG-GGCC
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHH--HHhh-hhcc
Confidence 4668888653 2347899999876 31 25666778999997 59998876432 1222 1399
Q ss_pred CCcEEEEEee-EeecCC----CCceEEEEEeEEEEEecCC
Q 012612 82 TGASIWIQGN-VVPSQG----SKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 82 ~g~~V~V~G~-v~~~~~----~~~~~El~~~~i~ils~~~ 116 (460)
.|+++.+++- |+.... ....+||....-+.+.+|.
T Consensus 75 ~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 75 VNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp TTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 9999999874 443211 1347888887666666664
No 98
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=76.23 E-value=4.1 Score=32.64 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=34.6
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEE
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~il 112 (460)
++|++..+.. + +.. |+.|+-|.|+|.+....-+...+.+++++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 5555544321 2 455 999999999999997655444799999999876
No 99
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=74.11 E-value=13 Score=32.14 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=34.2
Q ss_pred eEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecC----CCC--ceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~----~~~--~~~El~~~~i~ils~~ 115 (460)
+.|++..+.. +. .+. |+.|+.|.|+|.+.... .++ ..+||.|++|.+|...
T Consensus 58 i~vv~wg~~A--e~~~~~--l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLA--EIVGEY--LRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHH--HHHHHH--CCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHH--HHHHhh--cCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 5666655321 22 244 99999999999997642 222 3589999999998764
No 100
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=73.12 E-value=16 Score=27.28 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=33.5
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...| +|++|.++ +...+..+......++. ++.||.|.|.
T Consensus 8 iv~G~V~~v~~~G--~fV~l~~~-----~~Gllh~sel~~~~~~~--~~~Gd~V~v~ 55 (80)
T 2k52_A 8 FYKGVVTRIEKYG--AFINLNEQ-----VRGLLRPRDMISLRLEN--LNVGDEIIVQ 55 (80)
T ss_dssp EEEEEEEEEETTE--EEEEEETT-----EEEEECGGGCSSCCGGG--CCTTCEEEEE
T ss_pred EEEEEEEEEeCCE--EEEEECCC-----CEEEEEHHHCCccccee--eCCCCEEEEE
Confidence 3889999998876 89999764 46666654322111235 9999999876
No 101
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=71.32 E-value=22 Score=27.66 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=45.1
Q ss_pred CCCCCEEEEEEEEeeeccC----CCeEEEE-EEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC
Q 012612 26 DRVGLMIVVAGWVRTLRAQ----SSVTFIE-VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (460)
Q Consensus 26 ~~~~~~V~v~GwV~~~R~~----g~~~Fv~-lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (460)
+..|+-|+|+|-|..+|.. |...|+. .||......-.+.++-..-+-..+.. |..|++..+.|.|...+
T Consensus 46 dylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvea--lsngsvativgqvhqvq 119 (133)
T 3f1z_A 46 DYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEA--LSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTT--CCTTSEEEEEEECCCCC
T ss_pred hhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHh--hcCCceeeEeeeeeeee
Confidence 4689999999999999873 6777764 47765321112223221112233555 99999999999987644
No 102
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=70.24 E-value=10 Score=30.21 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=32.3
Q ss_pred eEEEEeCCccchhhH-hccCCCCCcEEEEEeeEeecC--CCCceEEEEEeEEEEEec
Q 012612 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQ--GSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 61 iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~--~~~~~~El~~~~i~ils~ 114 (460)
++|++..+.. +.+ +. |+.|+.|.|+|.+.... .|....||.+++++.|+.
T Consensus 50 ~~vv~~g~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN--QAITHS--ITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT--HHHHTT--CCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHH--HHHHhh--CCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 6777765432 222 34 99999999999998752 122248999999998864
No 103
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=69.64 E-value=33 Score=38.60 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCEEEEEEEEeee--cc--CCC-eEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 29 GLMIVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 29 ~~~V~v~GwV~~~--R~--~g~-~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
...|+|.|.|-.+ |. .|+ +.-+.|.|.++ +|.|..-.+. ..-+.+.. |+.|+.|.|+|.+....-. +++
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~--~~~~k~f~~~~~~~~~~~~--~~~g~~~~~~g~~~~d~~~-~~~ 91 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTN--SILVKMFSRDKEDAELMSG--VKKGMWVKVRGSVQNDTFV-RDL 91 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSC--EEEEEEECSSHHHHHHHHT--CCTTCEEEEEEEEEEETTT-TEE
T ss_pred cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCC--CEEEEEeecccchHHHHhc--CCCCCEEEEEEEEEeccCC-cce
Confidence 4579999999865 32 344 55567899985 4777543332 22233556 9999999999999875432 368
Q ss_pred EEEEeEEEEEecC
Q 012612 103 ELKVNKIVLVGKS 115 (460)
Q Consensus 103 El~~~~i~ils~~ 115 (460)
.+.+.+|..+.+.
T Consensus 92 ~~~~~~~~~~~~~ 104 (1041)
T 3f2b_A 92 VIIANDLNEIAAN 104 (1041)
T ss_dssp EEEEEEEEEECCC
T ss_pred EEEeeeeEEeccc
Confidence 8888888766653
No 104
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=65.08 E-value=32 Score=29.20 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=48.6
Q ss_pred CCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
=..|.+.|-|... +.|. +.|+|+||...++. -.+.. .-+ ..++.|..|-|.|.+..+.. +-.|.+.+
T Consensus 58 ~s~VWmQG~VV~~-~~g~---~~LdDgTG~~~v~g--~~~vp---~g~-p~l~~G~YVMV~G~v~~~s~---eP~i~AvK 124 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRGE---ARLRDPSGDFSVRG--LERVP---RGR-PCLVPGKYVMVMGVVQACSP---EPCLQAVK 124 (150)
T ss_dssp CSEEEEEEEEEEE-ETTE---EEEEETTEEEEEEC--GGGSC---CCS-CCCSTTCEEEEEEEEEECSS---SCEEEEEE
T ss_pred eEEEEEEeEEEEe-CCCe---EEEECCCceEEEee--ccccC---CCC-cccCCCCEEEEEEEEEecCC---CceEEEEE
Confidence 3678999999996 4453 57999997533222 11110 001 13889999999999987532 57777877
Q ss_pred EEEEecC
Q 012612 109 IVLVGKS 115 (460)
Q Consensus 109 i~ils~~ 115 (460)
+.=||..
T Consensus 125 m~DLS~~ 131 (150)
T 3mxn_B 125 MTDLSDN 131 (150)
T ss_dssp EEECCSC
T ss_pred eeeCCCC
Confidence 7777763
No 105
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=64.27 E-value=8.3 Score=39.05 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=61.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee---cc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+.|++|... ....+|.|||.++ |. .|++.-++|.|.+| .|++++..+.. +.+. ..|.
T Consensus 3 ~~~I~~L~p~--------~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~f~-~~l~ 69 (444)
T 4gop_C 3 IYPIEGLSPY--------QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAV--DRFY-PLLQ 69 (444)
T ss_dssp CCCSTTCCTT--------CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHH--HHHT-TTCC
T ss_pred ceeHHHCCCC--------CcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHH--HHHH-Hhee
Confidence 3677888654 1347999999864 32 25777788999987 59999886532 1222 2399
Q ss_pred CCcEEEEEee-EeecCC----CCceEEEEEeEEEEEecCC
Q 012612 82 TGASIWIQGN-VVPSQG----SKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 82 ~g~~V~V~G~-v~~~~~----~~~~~El~~~~i~ils~~~ 116 (460)
.|+++.+++- |..... ....+||....-+.+.++.
T Consensus 70 eG~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~ 109 (444)
T 4gop_C 70 ENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECT 109 (444)
T ss_dssp TTCEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECS
T ss_pred cCCEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEcc
Confidence 9999999964 443321 1346888887655556654
No 106
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=63.81 E-value=54 Score=27.76 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=54.6
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec----------c---------CCCeEEEEEEcCCCccceEEEEeCCccch
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----------A---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGY 72 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R----------~---------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~ 72 (460)
++|+||... ...|+|.|+|..+- . .+.++=+.|-|.||. |-+++..+.
T Consensus 17 ~kI~dL~pg--------~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e~--- 83 (145)
T 1wjj_A 17 VKVEQLKPG--------TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQ--- 83 (145)
T ss_dssp CCSTTCCTT--------CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTH---
T ss_pred eEHHHcCCC--------CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecCC---
Confidence 567888653 23478888886642 1 235777788899864 777766542
Q ss_pred hhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecC
Q 012612 73 DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 73 ~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~ 115 (460)
+.. +++||+|.+.+-...--. +.++|.+.+.--+.+.
T Consensus 84 --~~~--l~~Gd~v~i~na~v~~~~--G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 84 --VDL--MKPGATVILRNSRIDMFK--GTMRLGVDKWGRIEAT 120 (145)
T ss_dssp --HHH--TCTTCEEEEEEEEEEEET--TEEEEEECTTCCBCCC
T ss_pred --cCc--CCCCCEEEEeccEEEeEC--CEEEEEECCCEEEEEC
Confidence 344 899999999874433322 3688888765444443
No 107
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=63.34 E-value=27 Score=29.18 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=36.3
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCC--CCceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG--SKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~--~~~~~El~~~~i~ils~~ 115 (460)
++|++..+.. +.+. ..|+.|+-|.|+|.+..... ++..+.+.+++++.|+..
T Consensus 67 i~vv~wGk~A--E~~~-~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHEN--QAIT-HSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGG--GGGG-TTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHH--HHHH-HhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 6777776532 2222 13999999999999987532 334677789999998654
No 108
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=63.09 E-value=8.2 Score=42.29 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=67.5
Q ss_pred HHHHHHHhhhhCCceeecCceeecCCC----CCCCCceeeeccccCC-ccccccccHHHHH-HHH----hcCCC--ceEE
Q 012612 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETY----ATALS--NVYT 221 (460)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~----~~g~~--rvfe 221 (460)
..+.+|+.|...||.|+-|-.+++..- ....+...+. |-.. .--.||+|-=-.+ +.+ ..+.. |+||
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~--NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFE 571 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLP--SPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFE 571 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCS--SCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEc--CCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEE
Confidence 455789999999999999999987321 1112222222 3222 2346777754443 433 33443 7999
Q ss_pred EecccccCCCCCCCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 222 FGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 222 I~~~FR~E~~~~~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
||+||+.++. +..+..|-.+|=.-++. .|+.++...+|.++..+
T Consensus 572 iG~Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 572 SGLRFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eeeEEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 9999986543 22344566666554432 37888888888877654
No 109
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=60.09 E-value=5.1 Score=32.13 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=34.4
Q ss_pred CCCCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc---hhh
Q 012612 1 MGSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQ 74 (460)
Q Consensus 1 ~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~---~~~ 74 (460)
||+.-+--+.+..+|++..++-+ ..-..|+ .+.|.|.++...| +||+|.++ +..++..+... ...
T Consensus 1 ~~~~~~~~~~~~~iKq~~~~p~~~~~~~~~~G~--iv~G~V~~v~~~G--~fV~l~~~-----~~Gll~~sel~~~~~~~ 71 (109)
T 2khj_A 1 MGSSHHHHHHSSGLVPRGSHMFNNWVALNKKGA--IVTGKVTAVDAKG--ATVELADG-----VEGYLRASEASRDRVED 71 (109)
T ss_dssp --------------------CHHHHTTTCCSSS--EEEEEEEEECSSC--EEEECSTT-----CBCCBCTTCCCSSSSSS
T ss_pred CCccccccccccchhhcccCHHHHHhhcCCCCC--EEEEEEEEEECCe--EEEEECCC-----CEEEEEHHHcCcccccC
Confidence 56666666666778887765411 1123454 4889999998877 89999653 34445443321 111
Q ss_pred HhccCCCCCcEEEEE
Q 012612 75 VKSGLITTGASIWIQ 89 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~ 89 (460)
... .++.||.|.|.
T Consensus 72 ~~~-~~~vGd~V~v~ 85 (109)
T 2khj_A 72 ATL-VLSVGDEVEAK 85 (109)
T ss_dssp GGG-SCCTTCEEEEE
T ss_pred hhh-ccCCCCEEEEE
Confidence 211 38999998875
No 110
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=57.74 E-value=2.8 Score=42.86 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.6
Q ss_pred CCCcceeccHHHHHHHHcC
Q 012612 423 VPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 423 pp~~G~giGidRL~m~l~~ 441 (460)
.|..|||+|+|||+.+|-.
T Consensus 333 ~PavGFaig~eRl~~~l~~ 351 (456)
T 3lc0_A 333 IPCAGFGFGDCVIVELLQE 351 (456)
T ss_dssp CCEEEEEEESSHHHHHHHH
T ss_pred CCEEEEEeEHHHHHHHHHh
Confidence 4889999999999998853
No 111
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=57.65 E-value=22 Score=33.24 Aligned_cols=82 Identities=9% Similarity=0.165 Sum_probs=48.9
Q ss_pred CEEEEEEEEee---eccC--C-CeEEEEE-EcCC-------CccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeec
Q 012612 30 LMIVVAGWVRT---LRAQ--S-SVTFIEV-NDGS-------CLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (460)
Q Consensus 30 ~~V~v~GwV~~---~R~~--g-~~~Fv~l-rD~~-------~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~ 95 (460)
..|.+.|+|.+ +|.. | .++-+.| .+.. ...-++|++..... +.+.. |+.||.|.|+|.+...
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~A--e~~~~--l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELA--EWASE--LRKGDGLLVIGRLVND 204 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHH--HHHTT--CCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHH--HHhhh--cCCCCEEEEEEEEEee
Confidence 56889999987 3432 3 2333333 2221 01136666654321 12234 9999999999999764
Q ss_pred C----CCC--ceEEEEEeEEEEEecC
Q 012612 96 Q----GSK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 96 ~----~~~--~~~El~~~~i~ils~~ 115 (460)
. .++ ..+||.+++|.+|...
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred EEECCCCCEEEEEEEEEEEEEECccc
Confidence 2 222 2488999999988653
No 112
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=55.75 E-value=5.3 Score=39.65 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=30.1
Q ss_pred eeecccCCce-eeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHc
Q 012612 373 AMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440 (460)
Q Consensus 373 ~fDl~~~G~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~ 440 (460)
-|+.+.+|.| .|++|+. |+.+.+ .+. +-.|..||++|+|||+.+|-
T Consensus 318 vFe~~~~~~g~~i~~GGR----YD~L~~-----------------~fG-~~~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 318 VFEMFAPGVGAPIAQGGR----YDELLA-----------------QFG-AGAPAVGFAFEVERVMAVLE 364 (373)
T ss_dssp EEEEECTTCSSCSEEEEE----CTTTTG-----------------GGT-CCCCCEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCeEeeccc----ccHHHH-----------------hhC-CCCCeEEEEEEHHHHHHHHH
Confidence 4888888754 6777764 222211 111 22589999999999998764
No 113
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=54.44 E-value=5.4 Score=39.10 Aligned_cols=46 Identities=9% Similarity=0.220 Sum_probs=30.9
Q ss_pred eeecccCCce-eeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHc
Q 012612 373 AMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440 (460)
Q Consensus 373 ~fDl~~~G~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~ 440 (460)
-|+.+.+|.| -|++|+. |+.+.+.+ | + ..|..||+||+|||++++-
T Consensus 289 vFe~~~~~~~~~i~~GGR----YD~L~~~f---g--~-------------~~pavGfaiglerl~~~l~ 335 (344)
T 1z7m_A 289 MFKAYSSAANQPILSGGR----YDQLLSNF---Q--E-------------EAFAIGFCCHMDTILKALE 335 (344)
T ss_dssp EEEEEETTEEEEEEEEEE----CHHHHHTS---S--S-------------CCCCEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCeEeeCcc----HHHHHHHh---C--C-------------CCCeEEEEEEHHHHHHHHH
Confidence 4788887654 7777763 44443322 2 1 2378999999999998774
No 114
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=52.52 E-value=4.7 Score=41.23 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=16.7
Q ss_pred CCCcceeccHHHHHHHHcC
Q 012612 423 VPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 423 pp~~G~giGidRL~m~l~~ 441 (460)
.|..|||||+|||+.+|..
T Consensus 342 ~pavGfaiGieRli~~L~e 360 (465)
T 3net_A 342 MPGVGISIGLTRLISRLLK 360 (465)
T ss_dssp CCEEEEEEEHHHHHHHHHH
T ss_pred CceeeeeccHHHHHHHHHH
Confidence 4889999999999998864
No 115
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=52.18 E-value=30 Score=27.39 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=29.7
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ 110 (460)
|+|++..+.. +.+.+ +..|+.|.|+|.+.........+-++++.++
T Consensus 50 i~vv~wGk~A--E~~~~--~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMA--SVLDR--IAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHH--HHHTT--SCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEhHHH--HHHhh--cCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 7777776421 23455 8899999999999976544445666666553
No 116
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=51.06 E-value=75 Score=30.26 Aligned_cols=81 Identities=15% Similarity=0.316 Sum_probs=49.2
Q ss_pred CEEEEEEEEee---eccC--C-CeEEEEE------EcCCC-----ccceEEEEeCCccchhhHhccCCCCCcEEEEEeeE
Q 012612 30 LMIVVAGWVRT---LRAQ--S-SVTFIEV------NDGSC-----LSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNV 92 (460)
Q Consensus 30 ~~V~v~GwV~~---~R~~--g-~~~Fv~l------rD~~~-----~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v 92 (460)
..|.|.|+|.+ +|.. | .++=+.| +|..| ..-+.|++.... -+.+.+ |+.|+.|.|+|.+
T Consensus 130 N~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~--Ae~~~~--l~KG~~V~V~GrL 205 (301)
T 1se8_A 130 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDL--AENMKE--LRKGDPVMIMGRL 205 (301)
T ss_dssp EEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHH--HHHHTT--CCTTCEEEEEEEE
T ss_pred eEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHH--HHHHHh--cCCCCEEEEEEEE
Confidence 35789999987 4542 3 2332233 12212 112666665432 123445 9999999999999
Q ss_pred eecC----CC--CceEEEEEeEEEEEec
Q 012612 93 VPSQ----GS--KQKVELKVNKIVLVGK 114 (460)
Q Consensus 93 ~~~~----~~--~~~~El~~~~i~ils~ 114 (460)
.... .+ ...+||.+++|.+|..
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 7642 12 1258999999999875
No 117
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=48.14 E-value=6 Score=39.63 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=32.2
Q ss_pred eeecccCCce-eeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 373 AMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 373 ~fDl~~~G~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
-|+.+.+|.| -|++|+. |+.+.+.+ | |-.|..||++|+|||+.++-..
T Consensus 282 vFe~~~~~~g~~i~~GGR----YD~L~~~f---G---------------~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 282 VFEGYGNRLGVPLCSGGR----YDELLSKF---H---------------RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEETTCSSEEEEEEE----CTTHHHHT---T---------------CCCCEEEEEEEHHHHHHHHCC-
T ss_pred EEEEEECCCCCeeecccc----cchhhhcc---C---------------CCCCEEEEEeeHHHHHHHHHhc
Confidence 4788887754 7787774 33333222 1 2258899999999999988654
No 118
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=47.69 E-value=9.5 Score=35.56 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=41.3
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 447 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ird 447 (460)
.+...+|+.++|+ ||.-= .| |.. .|++. -|.++=+--|+|||.|.|-|.+||-|
T Consensus 134 AwGLGWEVWldGM-EITQF-----TY------FQQvGGi~c-------------~pv~~EITYGLERiamylQ~vd~vyd 188 (298)
T 1j5w_A 134 AWGVGWEVWLDGM-EITQF-----TY------FQQIGGISL-------------KDIPLEITYGLERIAMYLQGVDNVYE 188 (298)
T ss_dssp EEEEEEEEEETTE-EEEEE-----EE------EEEBTTBCC-------------SSCCEEEEEEHHHHHHHHHTCSSGGG
T ss_pred cccccceeeEcce-eeehh-----hh------hhhcCCccc-------------CccceeecccHHHHHHHHhCCCceec
Confidence 3567899999998 98621 00 111 23332 46778899999999999999999999
Q ss_pred ccc
Q 012612 448 AIP 450 (460)
Q Consensus 448 v~~ 450 (460)
+..
T Consensus 189 l~w 191 (298)
T 1j5w_A 189 VQW 191 (298)
T ss_dssp CEE
T ss_pred ccc
Confidence 864
No 119
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=47.05 E-value=25 Score=28.32 Aligned_cols=51 Identities=8% Similarity=0.221 Sum_probs=33.4
Q ss_pred eEEEEeCCccchhhH-hccCCCCCcEEEEEeeEeecC----CCC--ceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~----~~~--~~~El~~~~i~ils~~ 115 (460)
++|++-.+.. +.+ +. |..||.|.|+|.+.... .++ ..+||.+++|.+|+..
T Consensus 52 ~~v~~wg~~A--e~~~~~--l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTA--ENTALY--CQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHH--HHHHHH--CCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHH--HHHHHh--CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 6666654321 122 34 99999999999998642 222 3589999999998764
No 120
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=46.66 E-value=11 Score=35.47 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=41.7
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHH-cCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 447 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ird 447 (460)
.+...+|+.++|+ ||.-= .| |.. .|++. -|.++=+--|+|||.|.|-|.+||-|
T Consensus 146 AWGLGWEVWldGM-EVTQF-----TY------FQQvGGi~c-------------~pv~~EITYGLERlamylQ~vd~vyD 200 (311)
T 3rf1_A 146 AWGLGWEVWLDGM-EVTQF-----TY------FQQVGGIAV-------------DLVSAEITYGLERIAMYLQNVDNVYD 200 (311)
T ss_dssp EEEEEEEEEETTE-EEEEE-----EE------EEEETTEEC-------------SSCCEEEEEEHHHHHHHHTTCSSGGG
T ss_pred ccccceEEEEcCe-eEeee-----ee------eeeeCCccc-------------cccceeeehhHHHHHHHHhCCCeeee
Confidence 4567899999998 88521 00 111 13321 46778899999999999999999999
Q ss_pred cccc
Q 012612 448 AIPF 451 (460)
Q Consensus 448 v~~F 451 (460)
+..=
T Consensus 201 l~w~ 204 (311)
T 3rf1_A 201 IVWS 204 (311)
T ss_dssp SEEE
T ss_pred cccc
Confidence 8654
No 121
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=46.07 E-value=25 Score=38.39 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCCCEEEEEEEEeeecc--C--CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC--CcEEEEEeeEeecCCCCc
Q 012612 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT--GASIWIQGNVVPSQGSKQ 100 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~--~--g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~--g~~V~V~G~v~~~~~~~~ 100 (460)
..|+.|+|.|.|.+... . ++..=+.+.|++| .+++++=.. .|- .+. +.+ |+.+.|.|++...+. .+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~f~~--~~~-~~~--~~~~~g~~~~~~G~~~~~~~-~~ 234 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLV--HVPLKWFNQ--DYL-QTY--LKQLTGKEVFVTGTVKSNAY-TG 234 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSC--CEEEEECSC--CTT-HHH--HHTTCSSCEEEEEEECSCCT-TS
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCc--eEEEEEECc--HHH-Hhh--CccCCCCEEEEEEEEEEccC-CC
Confidence 34678999999987632 1 3344466789986 488877542 231 233 667 999999999986310 12
Q ss_pred eEEEEEeEEEEE
Q 012612 101 KVELKVNKIVLV 112 (460)
Q Consensus 101 ~~El~~~~i~il 112 (460)
..++.--++.+.
T Consensus 235 ~~~~~~p~~~~~ 246 (780)
T 1gm5_A 235 QYEIHNAEVTPK 246 (780)
T ss_dssp SCCEEEEEEECS
T ss_pred cEEEEcCEEeec
Confidence 345555555443
No 122
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=44.59 E-value=39 Score=27.81 Aligned_cols=49 Identities=16% Similarity=0.367 Sum_probs=33.4
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc--h-hhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--Y-DQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~-~~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...| +||+|.++ ++..+..+... + .... ..++.||.|.|.
T Consensus 10 iv~G~V~~i~~~G--~FV~l~~~-----~~Glihisel~~~~~~~~~-~~~~vGd~V~vk 61 (130)
T 2k4k_A 10 VYTGKVTGLQAYG--AFVALDEE-----TQGLVHISEVTHGFVKDIN-EHLSVGDEVQVK 61 (130)
T ss_dssp EEEEEEEEEETTE--EEEEEETT-----EEEEEEGGGTSSSCCSCGG-GTCCTTCEEEEE
T ss_pred EEEEEEEEEeCCe--EEEEECCC-----cEEEEEHHHCCcccccCcc-ccCCCCCEEEEE
Confidence 5789999998776 99999654 57777654321 1 1122 139999998876
No 123
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=44.58 E-value=88 Score=25.54 Aligned_cols=62 Identities=8% Similarity=0.164 Sum_probs=42.6
Q ss_pred EEEEEcCCCccceEE-EEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecC
Q 012612 49 FIEVNDGSCLSNMQC-VMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 49 Fv~lrD~~~~~~iQv-v~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~ 115 (460)
=+.|+||. ..+|. ++...... .+.++.|+.+++|.+.=....+-. .+.--|.+.++++|..+
T Consensus 46 Rl~lSDG~--~~~~~~mLatqln~--~v~~g~l~~~sIirl~~y~~~~v~-~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 46 RLLMSDGL--NTLSSFMLATQLNP--LVEEEQLSSNCVCQIHRFIVNTLK-DGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEEECSS--EEEEEEEECGGGHH--HHHTTSSCTTCEEEEEEEEEEECS-SSCEEEEEEEEEEEECS
T ss_pred EEEEECcc--hheeeehhHHHHHH--HHhcCCccCCCEEEEEEEEEEEec-CCcEEEEEEeeEEeecc
Confidence 36799998 46998 88765322 244455999999999866443322 02467788899999874
No 124
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=43.92 E-value=7.8 Score=39.26 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=15.1
Q ss_pred CCcceeccHHHHHHHHc
Q 012612 424 PHAGFGLGFERLVQFAT 440 (460)
Q Consensus 424 p~~G~giGidRL~m~l~ 440 (460)
|..|||||+|||+++|-
T Consensus 336 pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 336 PCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CEEEEEECHHHHHHHHH
T ss_pred CCccccccHHHHHHHHH
Confidence 77899999999998873
No 125
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=42.65 E-value=7.2 Score=39.74 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.2
Q ss_pred CCC-CcceeccHHHHHHHHcC
Q 012612 422 SVP-HAGFGLGFERLVQFATG 441 (460)
Q Consensus 422 ~pp-~~G~giGidRL~m~l~~ 441 (460)
.|+ .+|||||+|||+..+..
T Consensus 329 ~p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 329 APIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp EECEEEEEEEEHHHHHHHHHH
T ss_pred eceEEeeecccHHHHHHHHHH
Confidence 355 56999999999998754
No 126
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=42.53 E-value=1.2e+02 Score=23.61 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=50.7
Q ss_pred CCCCEEEEEEEEee--e-cc--CCCeEEEEEEcC--CCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCC
Q 012612 27 RVGLMIVVAGWVRT--L-RA--QSSVTFIEVNDG--SCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (460)
Q Consensus 27 ~~~~~V~v~GwV~~--~-R~--~g~~~Fv~lrD~--~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~ 99 (460)
..++.++|.|-|.. + |. ...+.|. |.|+ .+ ..|.|....-.++ +++.|.-|.|+|++..- .
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~~~-~~v~V~Y~GilPD-------lFrEGqgVV~~G~l~~~-~-- 73 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRFR-LEDKDNTS-KTVWVLYKGAVPD-------TFKPGVEVIIEGGLAPG-E-- 73 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEEE-EECSSCTT-CEEEEEEESCCCT-------TCCTTCEEEEEEEECTT-C--
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEEE-EEcCCCCC-cEEEEEECCCCCc-------cccCCCeEEEEEEEeCC-C--
Confidence 46788999999973 3 43 2457775 7886 12 4688887765432 37889999999999531 1
Q ss_pred ceEEEEEeEEEEEecCCC
Q 012612 100 QKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 100 ~~~El~~~~i~ils~~~~ 117 (460)
-.+.++ +||.||+.
T Consensus 74 --g~F~A~--evLaKh~e 87 (94)
T 2kct_A 74 --DTFKAR--TLMTKCPL 87 (94)
T ss_dssp --SEEEEE--EEEESSCC
T ss_pred --CEEEEe--EEEEeCCC
Confidence 124455 48999974
No 127
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=41.61 E-value=15 Score=36.75 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.9
Q ss_pred CCcceeccHHHHHHHHcCC
Q 012612 424 PHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~~ 442 (460)
|..|||||+|||+..+...
T Consensus 301 pa~Gf~igieRl~~~l~e~ 319 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEAE 319 (421)
T ss_pred CeEEEeecHHHHHHHHHhc
Confidence 5678999999999988653
No 128
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=40.68 E-value=40 Score=28.76 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~ 115 (460)
|+.|+.|.|+|.+.... .+ ...+||.|++|.+|...
T Consensus 81 l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 81 LTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp CCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred CCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99999999999998743 12 23589999999999764
No 129
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=40.18 E-value=12 Score=38.72 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=15.2
Q ss_pred CCcceeccHHHHHHHHc
Q 012612 424 PHAGFGLGFERLVQFAT 440 (460)
Q Consensus 424 p~~G~giGidRL~m~l~ 440 (460)
|..||++|+|||+++|-
T Consensus 389 pavGfa~gierl~~~le 405 (517)
T 4g85_A 389 PCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CEEEEEECHHHHHHHHH
T ss_pred CcccccchHHHHHHHHH
Confidence 78899999999998874
No 130
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=39.94 E-value=11 Score=38.35 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=16.8
Q ss_pred CCCcceeccHHHHHHHHcCC
Q 012612 423 VPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 423 pp~~G~giGidRL~m~l~~~ 442 (460)
.|..||++|+|||+.+|...
T Consensus 327 ~PavGfa~gleRl~~~l~~~ 346 (467)
T 4e51_A 327 TAACGWAMGIERILELLKEE 346 (467)
T ss_dssp CCEEEEEEEHHHHHHHHHHT
T ss_pred CCceeehHHHHHHHHHHHhc
Confidence 47789999999999988653
No 131
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=39.32 E-value=38 Score=28.10 Aligned_cols=51 Identities=12% Similarity=0.322 Sum_probs=34.6
Q ss_pred eEEEEeCCccchhhH-hccCCCCCcEEEEEeeEeecC----CCC--ceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQ----GSK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~----~~~--~~~El~~~~i~ils~~ 115 (460)
+.|++-.... +.+ +. |+.||.|.|+|.+.... .++ ..+||.|++|.+|...
T Consensus 51 ~~v~~wg~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTA--EIANQY--LSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHH--HHHHHH--CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHH--HHHHHh--CCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 5666554321 222 34 99999999999997642 222 3488999999998753
No 132
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=39.22 E-value=8.6 Score=40.25 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.6
Q ss_pred CCC-cceeccHHHHHHHHcC
Q 012612 423 VPH-AGFGLGFERLVQFATG 441 (460)
Q Consensus 423 pp~-~G~giGidRL~m~l~~ 441 (460)
+|+ ||||||+|||+..|..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 566 4899999999988753
No 133
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=39.06 E-value=26 Score=28.96 Aligned_cols=36 Identities=14% Similarity=0.482 Sum_probs=26.9
Q ss_pred CCCCcEEEEEeeEeecC----CC--CceEEEEEeEEEEEecC
Q 012612 80 ITTGASIWIQGNVVPSQ----GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~----~~--~~~~El~~~~i~ils~~ 115 (460)
|..|+.|.|+|.+.... .+ ...+||.|++|.+|+..
T Consensus 86 l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 86 VKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp CCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred CCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99999999999998642 12 13589999999998764
No 134
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=38.32 E-value=12 Score=37.67 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.2
Q ss_pred CCcceeccHHHHHHHHcCC
Q 012612 424 PHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~~ 442 (460)
|..|||||+|||+.++...
T Consensus 306 pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 306 PAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CEEEEEEEHHHHHHHHHHT
T ss_pred CeEEEEEcHHHHHHHHHhc
Confidence 5678999999999988753
No 135
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=37.73 E-value=14 Score=37.49 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecC-CCCCCCCceeeeccccCCccccccccH-HHHHHHHh----cCCCceEEEecc
Q 012612 152 NALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLDFFEKPAFLTVSG-QLNAETYA----TALSNVYTFGPT 225 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~-~~eg~~~~F~v~~~~~~~~~~~L~~Sp-ql~l~l~~----~g~~rvfeI~~~ 225 (460)
++|-+.+-+||.++|-.-|.+--|.+. ++ .=.| +.|. ..+|.... ....|+-...+|
T Consensus 6 ~eiR~~Fl~FF~~kgH~~vpSsslvp~~Dp---tLLf--------------tnAGM~~FKp~flG~~~p~~~r~t~sQkC 68 (465)
T 1yfs_A 6 HEIRELFLSFFEKKGHTRVKSAPLVPENDP---TLLF--------------VNAGMVPFKNVFLGLEKRPYKRATSCQKC 68 (465)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCCSSCTTCT---TCSS--------------CCSTTSTTHHHHHTSSCCSCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcccCCCC---Ccce--------------eccchhhhhHHhcCCCCCCCCceeccccc
Confidence 456677788999999998876655552 11 0112 1111 11222222 236789999999
Q ss_pred cccC-------CC-CCCCCCCccceeeeeecCCCH--HHHHHHHHHHHH
Q 012612 226 FRAE-------NS-NTSRHLAEFWMIEPELAFADL--KDDMACATAYLQ 264 (460)
Q Consensus 226 FR~E-------~~-~~~rHl~EFt~lE~e~~~~~~--~~~~~~~e~li~ 264 (460)
.|+. +. .|.||..=|.||=- .+|.|| ++.+..+=+++.
T Consensus 69 iRag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~LT 116 (465)
T 1yfs_A 69 LRVSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFVT 116 (465)
T ss_dssp ECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHH
T ss_pred cccCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHHH
Confidence 9942 22 37899877777753 357774 566665555553
No 136
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=37.38 E-value=7.4 Score=42.07 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=25.4
Q ss_pred CCcceeccHHHHHHHHcCCCCcccccccc
Q 012612 424 PHAGFGLGFERLVQFATGVENIRDAIPFP 452 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~~~~Irdv~~FP 452 (460)
++--.|+|+|||+|.+-|.+|+=|+ +|+
T Consensus 239 ~~iDtG~GlER~~~~lqg~~s~yd~-~f~ 266 (739)
T 2ztg_A 239 YIVDTGYGLERFVWASKGTPTVYDA-IFP 266 (739)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HCH
T ss_pred CeEecCcCHHHHHHHHcCCCchHHh-hHH
Confidence 6788999999999999999999998 665
No 137
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=36.95 E-value=12 Score=37.52 Aligned_cols=18 Identities=44% Similarity=0.909 Sum_probs=15.3
Q ss_pred CCcceeccHHHHHHHHcC
Q 012612 424 PHAGFGLGFERLVQFATG 441 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~ 441 (460)
|..|||||+|||+..+..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 556899999999998864
No 138
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=34.90 E-value=55 Score=26.15 Aligned_cols=49 Identities=14% Similarity=0.370 Sum_probs=33.3
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchh----hHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD----QVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~----~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...| +||+|.++ +..++..+...+. ... ..++.||.|.|.
T Consensus 33 ~~~G~V~~v~~~G--~FV~l~~~-----~~Glvhisel~~~~~~~~~~-~~~~vGd~V~vk 85 (115)
T 2khi_A 33 KLTGRVTNLTDYG--CFVEIEEG-----VEGLVHVSEMDWTNKNIHPS-KVVNVGDVVEVM 85 (115)
T ss_dssp EEEEEEEEEETTE--EEEECSTT-----CEEEEETTSSSCSSTTCSST-TTCCTTCEEEEE
T ss_pred EEEEEEEEEECCE--EEEEECCC-----CEEEEEHHHCCccccccCcc-cEECCCCEEEEE
Confidence 5899999998877 89999543 5677776543221 111 128899998876
No 139
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=34.05 E-value=1.8e+02 Score=23.15 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCEEEEEEEEeee---cc-CCCeEEEEE-----E--cCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEee-cC
Q 012612 29 GLMIVVAGWVRTL---RA-QSSVTFIEV-----N--DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP-SQ 96 (460)
Q Consensus 29 ~~~V~v~GwV~~~---R~-~g~~~Fv~l-----r--D~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~-~~ 96 (460)
...|.+.|++.+= |. ..+-.|... | +.+ .-|-|++...... .-. +..|+-|.|+|.+.. ..
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~--Dfi~ivvw~klAe---~~~--~~kG~~v~v~G~lrsy~~ 83 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETK--DYLPITISNRLFE---GMN--LEVGTRVKIEGQLRSYNR 83 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCE--EEEEEEEEGGGST---TCC--CCTTCEEEEEEEEEEEEC
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCC--cEEEEEEEhHHhh---HHh--hcCCCEEEEEEEEEecce
Confidence 3458999998653 22 122233322 1 222 3466766654321 123 668999999999964 21
Q ss_pred ----CC--CceEEEEEeEEEEEec
Q 012612 97 ----GS--KQKVELKVNKIVLVGK 114 (460)
Q Consensus 97 ----~~--~~~~El~~~~i~ils~ 114 (460)
.+ ..-+||.|.+++.|.+
T Consensus 84 ~~~~dG~~R~v~eV~a~~i~flde 107 (107)
T 4gs3_A 84 KSPEEGKNKLILTVFARDISVVPE 107 (107)
T ss_dssp C--------EEEEEEEEEEEEECC
T ss_pred EECCCCCEEEEEEEEEEEEEEccC
Confidence 12 1358999999998863
No 140
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=33.45 E-value=2.5e+02 Score=24.69 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=46.0
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec----c-CCC---eEEEEEEcCCC---ccceEEEEeCCccchhhHhccCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR----A-QSS---VTFIEVNDGSC---LSNMQCVMTSDAEGYDQVKSGLI 80 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R----~-~g~---~~Fv~lrD~~~---~~~iQvv~~~~~~~~~~~~~~~l 80 (460)
++++++.+. -..++.|.|.|=|...+ . .|+ .+-+.|.|.+. ...|.|.+=.... +.+.. +
T Consensus 30 ~~~r~~l~~-----~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~--e~LP~--V 100 (187)
T 1qzg_A 30 QSIRSSQEL-----QKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQG--NDLPV--I 100 (187)
T ss_dssp ECHHHHTSC-----CSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSS--SCSCC--C
T ss_pred EEHHHHHhh-----ccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCCh--hhCCC--C
Confidence 455665543 35678899999997663 2 243 56677889771 1235664432211 12233 5
Q ss_pred -CCCcEEEEEeeEeecC
Q 012612 81 -TTGASIWIQGNVVPSQ 96 (460)
Q Consensus 81 -~~g~~V~V~G~v~~~~ 96 (460)
..||+|.+...-.+.-
T Consensus 101 ~~~GDIIlL~rvkiq~~ 117 (187)
T 1qzg_A 101 KQVGQPLLLHQITLRSY 117 (187)
T ss_dssp CSTTCEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEE
Confidence 7899999998766543
No 141
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=32.96 E-value=16 Score=36.68 Aligned_cols=95 Identities=24% Similarity=0.297 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccH-HHHHHHH----hcCCCceEEEeccc
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG-QLNAETY----ATALSNVYTFGPTF 226 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Sp-ql~l~l~----~~g~~rvfeI~~~F 226 (460)
++|-+.+-+||.++|-.-|.+--|.+... -++.++.|. ..+|... .....|+-...+|.
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~D----------------ptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCi 68 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHND----------------PTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCV 68 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSSC----------------TTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCCC----------------CCceeecccchhhhhhhcCCCCCCCCCccccccce
Confidence 45677788899999988886555544211 111112221 1122221 12467899999999
Q ss_pred cc-------CCC-CCCCCCCccceeeeeecCCCH--HHHHHHHHHHH
Q 012612 227 RA-------ENS-NTSRHLAEFWMIEPELAFADL--KDDMACATAYL 263 (460)
Q Consensus 227 R~-------E~~-~~~rHl~EFt~lE~e~~~~~~--~~~~~~~e~li 263 (460)
|. |+. .|.||..=|.||=- .+|.|| ++.+..+=+++
T Consensus 69 R~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~L 114 (441)
T 3hy0_A 69 RAGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLLL 114 (441)
T ss_dssp CEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHH
T ss_pred ecCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHHh
Confidence 96 222 37899888888753 357774 35555444443
No 142
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=32.75 E-value=63 Score=25.91 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=38.0
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc-cchhh---HhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQ---VKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~---~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
.+.|.|.++...| +||+|..+ + +..++..+. ..|.. .. ..++.||.|.|. |..-....+.+.+..
T Consensus 24 i~~G~V~~v~~fG--~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~-~~~~~Gd~V~vk--V~~vd~~~~~i~Lsl 92 (119)
T 1wi5_A 24 LLTGTVSSLEDHG--YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKG-AKLKVGQYLNCI--VEKVKGNGGVVSLSV 92 (119)
T ss_dssp EEEEEEEEECSSE--EEEECCCS-S---CEEEEEHHHHHHHHHHHSSS-CCCCTTCEEEEE--EEECCTTSCEEEEEC
T ss_pred EEEEEEEEEeCce--EEEEECCC-C---eEEEEEEecccccccccCcc-CEeCCCCEEEEE--EEEEeCCCCEEEEEE
Confidence 5889999999887 89999622 1 345554433 12221 11 139999999875 433322222455543
No 143
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=32.34 E-value=13 Score=40.29 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCcceeccHHHHHHHHcCCCCcccccccc
Q 012612 424 PHAGFGLGFERLVQFATGVENIRDAIPFP 452 (460)
Q Consensus 424 p~~G~giGidRL~m~l~~~~~Irdv~~FP 452 (460)
||---|+|+|||++.+-|.+|.=|+ +|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 5566799999999999999999988 664
No 144
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=32.03 E-value=75 Score=27.87 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=31.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchh---hHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYD---QVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~---~~~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...| +||+|.+..+ +...+..+..... ...+ .++.||.|.|.
T Consensus 18 iv~G~V~~I~~fG--aFV~L~e~~g---~eGLvhiSels~~~v~~~~~-~~~vGd~V~Vk 71 (182)
T 1kl9_A 18 VVMVNVRSIAEMG--AYVSLLEYNN---IEGMILLSELSRRRIRSINK-LIRIGRNECVV 71 (182)
T ss_dssp EEEEEEEEECSSE--EEEEETTTTT---EEEEEEGGGC-------------CTTCEEEEE
T ss_pred EEEEEEEEEeccE--EEEEEccCCC---cEEEEEHHHCCCcccCCHHH-hcCCCCEEEEE
Confidence 5899999999888 8999964332 6777775543221 1221 37888887765
No 145
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=31.83 E-value=80 Score=27.45 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=32.9
Q ss_pred CCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHh--ccCCCCCcEEEEE
Q 012612 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK--SGLITTGASIWIQ 89 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~--~~~l~~g~~V~V~ 89 (460)
.|+ .+.|.|.++...| +||+|.+..+ +...+..+......++ ...++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~i~~fG--aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDD--IVMVNVQQIAEMG--AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTC--EEEEEEEEEETTE--EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCC--EEEEEEEEEecce--EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 454 5889999998877 8999943332 5677765543222111 0137888888775
No 146
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=27.61 E-value=92 Score=24.82 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=43.2
Q ss_pred CEEEEEEEEeee---cc--CCC--eEEEEE-Ec------CCCccceEEEEeCCccchhhH-hccCCCCCcEEEEEeeEee
Q 012612 30 LMIVVAGWVRTL---RA--QSS--VTFIEV-ND------GSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 30 ~~V~v~GwV~~~---R~--~g~--~~Fv~l-rD------~~~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~ 94 (460)
..|.+.|++.+- |. .|+ ++=+.| .+ .+. -+.|++-.+.. +.+ +. |+.||-|.|+|.+..
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~--fi~vv~wgk~A--E~~~~y--l~KG~~V~VeGrL~~ 85 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPA--RLKVVGWGAVA--QELQDR--CRLNDEVVLEGRLRI 85 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCE--EEEEEEETHHH--HHHHHH--CCTTCEEEEEEEEEE
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcE--EEEEEEEhHHH--HHHHHh--CCCCCEEEEEEEEEe
Confidence 458888888753 43 231 222222 12 222 26677665421 222 34 999999999999986
Q ss_pred cC----CC--CceEEEEEeEEE
Q 012612 95 SQ----GS--KQKVELKVNKIV 110 (460)
Q Consensus 95 ~~----~~--~~~~El~~~~i~ 110 (460)
.. .+ ....||.|+++.
T Consensus 86 r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 86 NSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EC--------CCEEEEEEEEEE
T ss_pred eeEECCCCCEEEEEEEEEEEEE
Confidence 43 11 235888887763
No 147
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=27.07 E-value=26 Score=34.82 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.7
Q ss_pred CCcceeccHHHHHHHHc
Q 012612 424 PHAGFGLGFERLVQFAT 440 (460)
Q Consensus 424 p~~G~giGidRL~m~l~ 440 (460)
|..|||+|+|||+..+-
T Consensus 302 P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 302 TGIGFALSIERLLLALE 318 (420)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred CEEEEEecHHHHHHHHH
Confidence 56799999999999873
No 148
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=26.13 E-value=2.4e+02 Score=22.26 Aligned_cols=68 Identities=13% Similarity=0.296 Sum_probs=35.3
Q ss_pred CCCEEEEEEEEeeecc----C-CCeEEEEEEcCCCc-cceEEEEeCCccch--hhHhccCCCCCcEEEEEeeEeecC
Q 012612 28 VGLMIVVAGWVRTLRA----Q-SSVTFIEVNDGSCL-SNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQ 96 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~----~-g~~~Fv~lrD~~~~-~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~V~G~v~~~~ 96 (460)
.+..+++-|+|+.+-. . +=.-|...-|+... .+=|.++.--...+ +.+|. .|+.|++|.|+|+++..+
T Consensus 2 ~~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~-~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 2 AGSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKD-QVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp --CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC----------CCCTTCEEEEEEEEECCC
T ss_pred CccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHH-HHhCCCEEEEEeEEEeee
Confidence 3567899999999975 1 22344444554310 11122111000122 33553 499999999999998865
No 149
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=25.79 E-value=83 Score=25.47 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=32.0
Q ss_pred eEEEEeC-Cccchhh-HhccCCCCCcEEEEEeeEeec----C--CCC--ceEEEEEe----EEEEEecC
Q 012612 61 MQCVMTS-DAEGYDQ-VKSGLITTGASIWIQGNVVPS----Q--GSK--QKVELKVN----KIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~-~~~~~~~-~~~~~l~~g~~V~V~G~v~~~----~--~~~--~~~El~~~----~i~ils~~ 115 (460)
+.|++-. ... +. .+. |+.||.|.|+|.+... + .++ ...||.|+ ++++|+.-
T Consensus 56 ~~v~~wg~~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k 120 (124)
T 3ulp_A 56 HRIVVYDQNIV--DLIDKY--LRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDK 120 (124)
T ss_dssp EEEEECCHHHH--HHHHHH--CCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC--
T ss_pred EEEEEEEchHH--HHHHhh--cCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCc
Confidence 5666654 221 11 234 9999999999999753 2 222 35888887 88887653
No 150
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.38 E-value=1.6e+02 Score=22.88 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=35.3
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc-c-h--hhH-hccCCCCCcEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-G-Y--DQV-KSGLITTGASIWIQ 89 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~-~-~--~~~-~~~~l~~g~~V~V~ 89 (460)
..|+ .+.|.|.++...| +|++|.+... .+..++..+.. . + ... +. ++.||.|.|.
T Consensus 11 ~vG~--i~~G~V~~v~~fG--~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~--~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGD--IYNGKVTSIMQFG--CFVQLEGLRK--RWEGLVHISELRREGRVANVADV--VSKGQRVKVK 70 (103)
T ss_dssp CTTC--EEEEEEEEECSSC--EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHH--CCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeccE--EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccE--eCCCCEEEEE
Confidence 3454 5889999999888 8999976210 15666765432 1 1 111 34 8899998876
No 151
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=23.78 E-value=2.3e+02 Score=21.24 Aligned_cols=70 Identities=14% Similarity=0.291 Sum_probs=41.6
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCC-ccc---hhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEG---YDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~-~~~---~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
..|+ .+.|.|. +...| +|++|.+..+ +...+..+ ... +...++ .+ .||.|.|. |..-....+.+
T Consensus 10 ~vG~--~~~G~V~-v~~fG--~FVel~~~~~---~eGLvhis~el~~~~~~~~~~-~~-~Gd~V~Vk--V~~vd~~~~kI 77 (88)
T 1luz_A 10 NAGD--VIKGRVY-EKDYA--LYIYLFDYPH---FEAILAESVKMHMDRYVEYRD-KL-VGKTVKVK--VIRVDYTKGYI 77 (88)
T ss_dssp CTTC--EEEEEEE-EETTE--EEEEETTCTT---SEEEEGGGSSCCHHHHHHHHH-HH-TTCEEEEE--EEEEETTTTEE
T ss_pred CCCC--EEEEEEE-EEccE--EEEEECCCCC---eEEEEEeeHHhCcccccCHhH-Ee-CCCEEEEE--EEEEECCCCEE
Confidence 3454 5789999 88888 8999965222 56777765 432 222332 26 99999887 32222222356
Q ss_pred EEEEeE
Q 012612 103 ELKVNK 108 (460)
Q Consensus 103 El~~~~ 108 (460)
.+....
T Consensus 78 ~lslk~ 83 (88)
T 1luz_A 78 DVNYKR 83 (88)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 665543
No 152
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.49 E-value=50 Score=26.74 Aligned_cols=49 Identities=18% Similarity=0.417 Sum_probs=31.3
Q ss_pred EEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc---hhhH-hccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQV-KSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~---~~~~-~~~~l~~g~~V~V~ 89 (460)
.+.|.|.++...| +||+| ++.+ +...+..+... ++.. +. ++.||.|.|.
T Consensus 25 iv~G~V~~I~~fG--aFV~l-~g~~---~~Glvhisel~~~~~~~~~~~--~~~Gd~V~Vk 77 (119)
T 2cqo_A 25 IFQGEVAMVTDYG--AFIKI-PGCR---KQGLVHRTHMSSCRVDKPSEI--VDVGDKVWVK 77 (119)
T ss_dssp EEEEEEEEEETTE--EEEEC-TTCS---SCEEEEHHHHCSSCCSCHHHH--CCTTCEEEEE
T ss_pred EEEEEEEEEeCce--EEEEE-CCCc---EEEEEEHHHCCcccccChhhc--CCCCCEEEEE
Confidence 5889999998877 89999 4421 24555433211 1112 24 8999999876
No 153
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=22.99 E-value=1.5e+02 Score=27.41 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=23.8
Q ss_pred HhccCCCCCcEEEEEeeEeecCCC----C----ceEEEEEeEEEEEec
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGS----K----QKVELKVNKIVLVGK 114 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~----~----~~~El~~~~i~ils~ 114 (460)
+.. +++||-|.|+|.+...+.. . -..-|.|..|+.+++
T Consensus 222 vd~--~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 222 VDS--ARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp TTS--SCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred cCc--ccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 345 8999999999999775421 1 134455666665543
No 154
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=22.76 E-value=45 Score=28.04 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=33.9
Q ss_pred ceEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecC----CCC--ceEEE---EEeEEEEEecC
Q 012612 60 NMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQ----GSK--QKVEL---KVNKIVLVGKS 115 (460)
Q Consensus 60 ~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~----~~~--~~~El---~~~~i~ils~~ 115 (460)
-+.|++-.+.. +. .+. |+.||.|.|+|.+.... .++ ..+|| .+++|.+|...
T Consensus 54 ~~~v~~wg~~A--e~~~~~--l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 54 WHRVVLFGKLA--EVASEY--LRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEEEEETHHH--HHHHHH--CCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred EEEEEEehHHH--HHHHHh--cCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 36777665421 22 245 99999999999997642 222 24677 77888887653
No 155
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=21.34 E-value=1.8e+02 Score=25.14 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=33.6
Q ss_pred EEEEEEeeeccCCCeEEEEEEcC---C--CccceEEEEeCCccc---hhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVNDG---S--CLSNMQCVMTSDAEG---YDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lrD~---~--~~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V~V~ 89 (460)
.|.|+|.++...+ +|++|..- . -...++.++..+... .+.+.+ .++.||.|.++
T Consensus 60 iV~G~V~~V~~~g--a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~-~~~~GD~V~ak 121 (179)
T 3m7n_A 60 VVLGRVVDLRNSI--ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISE-AVGYLDILKAR 121 (179)
T ss_dssp EEEEEEEEECSSE--EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGG-TCCTTCEEEEE
T ss_pred EEEEEEEEEeCCc--EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhh-cCCCCCEEEEE
Confidence 5789999987654 89999651 1 001367777654311 112222 39999999876
No 156
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=21.09 E-value=1.3e+02 Score=25.88 Aligned_cols=82 Identities=10% Similarity=0.259 Sum_probs=46.9
Q ss_pred CEEEEEEEEee---eccC--CC-eEEEEE-E-----cC-CC-----ccceEEEEeCC-ccchhh-HhccCCCCCcEEEEE
Q 012612 30 LMIVVAGWVRT---LRAQ--SS-VTFIEV-N-----DG-SC-----LSNMQCVMTSD-AEGYDQ-VKSGLITTGASIWIQ 89 (460)
Q Consensus 30 ~~V~v~GwV~~---~R~~--g~-~~Fv~l-r-----D~-~~-----~~~iQvv~~~~-~~~~~~-~~~~~l~~g~~V~V~ 89 (460)
..|.|.|+|.+ +|.. |+ ++-+.| . |. +| ..-+.|++-.+ .. +. .+. |+.|+.|.|+
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lA--e~~~~~--l~KG~~V~Ve 99 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFA--KIALQY--LHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHH--HHHHHH--CCTTCEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHH--HHHHHh--CCCCCEEEEE
Confidence 56899999986 4542 32 332333 1 11 01 12366666543 21 12 234 9999999999
Q ss_pred eeEeecC----CC--CceEEEEE----eEEEEEecC
Q 012612 90 GNVVPSQ----GS--KQKVELKV----NKIVLVGKS 115 (460)
Q Consensus 90 G~v~~~~----~~--~~~~El~~----~~i~ils~~ 115 (460)
|.+.... .+ ...+||.| .+|++|+..
T Consensus 100 GrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 100 GKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 9998642 12 23578877 588988764
No 157
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=20.29 E-value=1.2e+02 Score=27.94 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=33.8
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC---CC--CceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ---GS--KQKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~---~~--~~~~El~~~~i~ils~~ 115 (460)
+.|++..... +.+.. .|+.|+.|.|+|.+.... .+ ...+||.+++|.+|...
T Consensus 54 ~~v~~~g~~A--e~~~~-~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 54 HRVRLLGRQA--EMWGD-LLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEETHHH--HHHTT-TCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEchHH--HHHHH-hCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 5666654321 22321 399999999999997642 11 23589999999988754
No 158
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=20.16 E-value=1e+02 Score=27.37 Aligned_cols=82 Identities=13% Similarity=0.289 Sum_probs=46.2
Q ss_pred CEEEEEEEEee---eccC--C-CeEEEEE-E-----cC-CC-----ccceEEEEeCC-ccchhhH-hccCCCCCcEEEEE
Q 012612 30 LMIVVAGWVRT---LRAQ--S-SVTFIEV-N-----DG-SC-----LSNMQCVMTSD-AEGYDQV-KSGLITTGASIWIQ 89 (460)
Q Consensus 30 ~~V~v~GwV~~---~R~~--g-~~~Fv~l-r-----D~-~~-----~~~iQvv~~~~-~~~~~~~-~~~~l~~g~~V~V~ 89 (460)
..|+|.|+|.+ +|.. | .++-+.| . |. ++ ..-+.|++-.+ .. +.+ +. |+.|+.|.|+
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lA--e~~~~y--L~KGs~V~Ve 102 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLV--KVVEQY--LKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHH--HHHHHH--CCTTCEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHH--HHHHhh--cCCCCEEEEE
Confidence 46899999987 4542 3 2333333 1 21 11 01256666542 11 122 35 9999999999
Q ss_pred eeEeecC----CCC--ceEEEEEe----EEEEEecC
Q 012612 90 GNVVPSQ----GSK--QKVELKVN----KIVLVGKS 115 (460)
Q Consensus 90 G~v~~~~----~~~--~~~El~~~----~i~ils~~ 115 (460)
|.+.... .++ ..+||.|+ +|++|+..
T Consensus 103 GrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 103 GQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 9997542 222 35788887 57887654
Done!