RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012612
(460 letters)
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 939 bits (2427), Expect = 0.0
Identities = 406/486 (83%), Positives = 432/486 (88%), Gaps = 27/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYAT 214
GAGEQFCVTTL DFF KPAFLTVSGQLN ETYAT
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 215 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 274
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+YIL+NC
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC 379
Query: 275 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 334
KEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DLQSEH
Sbjct: 380 KEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439
Query: 335 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 394
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 440 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499
Query: 395 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
EYLE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 500 EYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559
Query: 455 PGSVEF 460
PGS EF
Sbjct: 560 PGSAEF 565
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 785 bits (2029), Expect = 0.0
Identities = 273/457 (59%), Positives = 336/457 (73%), Gaps = 14/457 (3%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTL------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 243
TTL DFF K A+LTVSGQL AE YA AL VYTFGPTFRAENSNT RHLAEFWMI
Sbjct: 175 TTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMI 234
Query: 244 EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ 303
EPE+AFADL+D+M A L+YVV+Y+L+NC +D++F N ++KG I+RL E F +
Sbjct: 235 EPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPR 294
Query: 304 LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR 363
++YT+AIE+L K+ KKFEF V+WG DL SEHERYL EE F PV V++YPK+IKAFYMR
Sbjct: 295 ITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHF-KKPVFVTNYPKDIKAFYMR 353
Query: 364 QNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV 423
N DG+TVAAMD+L P IGE+IGGSQREERL+ LE R+ EL LN++ YWWYLDLR YGSV
Sbjct: 354 LNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSV 413
Query: 424 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
PH+GFGLGFERLV + TG++NIRD IPFPRTPG EF
Sbjct: 414 PHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAEF 450
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase. In a multiple
sequence alignment of representative asparaginyl-tRNA
synthetases (asnS), archaeal/eukaryotic type
aspartyl-tRNA synthetases (aspS_arch), and bacterial
type aspartyl-tRNA synthetases (aspS_bact), there is a
striking similarity between asnS and aspS_arch in gap
pattern and in sequence, and a striking divergence of
aspS_bact. Consequently, a separate model was built for
each of the three groups. This model, asnS, represents
asparaginyl-tRNA synthetases from the three domains of
life. Some species lack this enzyme and charge tRNA(asn)
by misacylation with Asp, followed by transamidation of
Asp to Asn [Protein synthesis, tRNA aminoacylation].
Length = 453
Score = 629 bits (1625), Expect = 0.0
Identities = 250/440 (56%), Positives = 324/440 (73%), Gaps = 8/440 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL------DFFEKPAF 200
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F V+T DFF K A+
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTGNIDFSQDFFGKEAY 194
Query: 201 LTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACAT 260
LTVSGQL ETYA ALS VYTFGPTFRAE SNTSRHL+EFWMIEPE+AFA+L D + A
Sbjct: 195 LTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAE 254
Query: 261 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 320
++Y+++ +L+NC +++ F +K +I RL + F +++YTDAIE+L ++ K F
Sbjct: 255 TLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNF 314
Query: 321 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 380
E+ WG DLQ+EHER+L EE F PV V++YPK+IKAFYM+ NDDG+TVAAMD+L P
Sbjct: 315 EYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPG 373
Query: 381 IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440
IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYLDLR YGSVPH+GFGLGFERL+ + T
Sbjct: 374 IGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYIT 433
Query: 441 GVENIRDAIPFPRTPGSVEF 460
G+ENIRDAIPFPRTPG++ F
Sbjct: 434 GLENIRDAIPFPRTPGNINF 453
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
ribosomal structure and biogenesis].
Length = 435
Score = 559 bits (1442), Expect = 0.0
Identities = 203/455 (44%), Positives = 275/455 (60%), Gaps = 22/455 (4%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
F +D+F+K A+LT S QL E A AL V+T GPTFRAE SNT RHL+EFWM++PE
Sbjct: 173 F---KVDYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPE 229
Query: 247 LAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSY 306
+AFADL D M A ++Y+ + +L+ C ++++F + L F +++Y
Sbjct: 230 MAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSE-----LKRPESAPFPRITY 284
Query: 307 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 366
+AIE+L +K FE V+WG DL +EHERYL EE F PV V++YPKEIK FYMR +
Sbjct: 285 KEAIEIL--EEKGFEK-VEWGDDLGTEHERYLGEEYFKP-PVFVTNYPKEIKPFYMRPDP 340
Query: 367 DG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH 425
D TVA+ D+L P GE+IGGSQRE + L R+ E L+ +SY WYLDLR YG PH
Sbjct: 341 DNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPH 400
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
AGFGLG ERLV + G++NIR+AIPFPR PG +
Sbjct: 401 AGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II
core domain. Assignment to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure and the
presence of three characteristic sequence motifs in the
core domain. This family includes AsnRS as well as a
subgroup of AspRS. AsnRS and AspRS are homodimers,
which attach either asparagine or aspartate to the 3'OH
group of ribose of the appropriate tRNA. While archaea
lack asnRS, they possess a non-discriminating aspRS,
which can mischarge Asp-tRNA with Asn. Subsequently, a
tRNA-dependent aspartate amidotransferase converts the
bound aspartate to asparagine. The catalytic core domain
is primarily responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate.
Length = 322
Score = 431 bits (1111), Expect = e-151
Identities = 146/334 (43%), Positives = 201/334 (60%), Gaps = 14/334 (4%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 185 EQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 244
E F + +F KPA+L S QL E AL VY GP FRAE SNT RHL+EFWM+E
Sbjct: 61 ELF---KVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLE 117
Query: 245 PELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ 303
E+AF D + M ++Y+ + +L+ C ++++ N ++R F +
Sbjct: 118 AEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN------QLNRELLKPLEPFPR 171
Query: 304 LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR 363
++Y +AIELL + + E VKWG DL +EHER L E G PV V+DYPKEIK FYM+
Sbjct: 172 ITYDEAIELLREKGVEEE--VKWGEDLSTEHERLLGEIVKGD-PVFVTDYPKEIKPFYMK 228
Query: 364 QNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 422
+DD TV + D+L+P +GE++GGSQR + LE R+ E L+ +S+ WYLDLR YG
Sbjct: 229 PDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGM 288
Query: 423 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456
PH GFGLG ERLV + G++NIR+AI FPR P
Sbjct: 289 PPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
Length = 572
Score = 388 bits (999), Expect = e-130
Identities = 170/271 (62%), Positives = 212/271 (78%), Gaps = 4/271 (1%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF + AFLTVSGQL ETYA ALS+VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL
Sbjct: 303 DFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADL 362
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
+DDM CA AY++Y+ +++LD C +DM+ + G IDRL VA F +++YT+AIEL
Sbjct: 363 EDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIEL 422
Query: 313 LIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 369
L +A K+F+ V+WG DL SEHERYLTE F P+IV +YPK IKAFYMR NDD +
Sbjct: 423 LEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEK 481
Query: 370 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 429
TVAAMD+LVP++GELIGGSQREER + ++ R++E+ L + Y WYLDLR YG+V H GFG
Sbjct: 482 TVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFG 541
Query: 430 LGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
LGFER++ FATG++NIRD IPFPR PG +
Sbjct: 542 LGFERMILFATGIDNIRDVIPFPRYPGKADL 572
Score = 179 bits (454), Expect = 4e-50
Identities = 91/192 (47%), Positives = 127/192 (66%), Gaps = 10/192 (5%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PIIT SDC
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 181 EGAGEQFCVTTL 192
EGAGE F VTTL
Sbjct: 204 EGAGEMFQVTTL 215
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional.
Length = 586
Score = 373 bits (959), Expect = e-124
Identities = 160/268 (59%), Positives = 206/268 (76%), Gaps = 1/268 (0%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K AFLTVSGQL+ E +++ +VYTFGPTFRAENS+TSRHLAEFWMIEPE+AFADL
Sbjct: 320 DFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADL 379
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
D+M A +Y++Y + Y+L+N +D+ +F +E G+I RL + + DF +++YT+ I+L
Sbjct: 380 YDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDL 439
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N+D +TVA
Sbjct: 440 LQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLNEDQKTVA 498
Query: 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS PHAGFGLGF
Sbjct: 499 AMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGF 558
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERL+ TGV+NI+D IPFPR PG EF
Sbjct: 559 ERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
Score = 131 bits (330), Expect = 5e-33
Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 21/183 (11%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL 192
TTL
Sbjct: 257 TTL 259
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase.
Length = 633
Score = 333 bits (855), Expect = e-108
Identities = 160/365 (43%), Positives = 230/365 (63%), Gaps = 29/365 (7%)
Query: 111 LVGKSD----PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV---RNALAYATHKFFQ 163
L+GKSD + + +S E + KA ++ +TN + R R AL A +
Sbjct: 279 LLGKSDDKEEKKPVHETEGISLEAV--KAAIKEKTNLVEELKRSESNREALVAAEQDLRK 336
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTL---------DFFEKPAFLTVSGQLNAETYAT 214
N AS E + T++ DFF +P +LTVSG+L+ E+YA
Sbjct: 337 TNQL---------ASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYAC 387
Query: 215 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 274
AL NVYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y +++ +++L+NC
Sbjct: 388 ALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENC 447
Query: 275 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWGCDLQSE 333
EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG L +E
Sbjct: 448 SEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTTE 507
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
H YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I GSQ EER
Sbjct: 508 HLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEER 566
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
++ L R++EL L R+ Y WYLDLR +G+V H+GF LGFE +V FATG+ ++RDAIPFPR
Sbjct: 567 MDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPR 626
Query: 454 TPGSV 458
+ G
Sbjct: 627 SWGKA 631
Score = 142 bits (359), Expect = 9e-37
Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 14/194 (7%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTL 192
D G GE F VTTL
Sbjct: 266 DATGFGEMFRVTTL 279
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 345
Score = 255 bits (653), Expect = 2e-81
Identities = 104/352 (29%), Positives = 157/352 (44%), Gaps = 29/352 (8%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245
F + F+ K A+L S QL + A V+ P FR E+ T RH EF ++
Sbjct: 61 F-LVPSKFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFTQLDL 119
Query: 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER------ 299
E++F D +D M ++YV + +L +E IE R+ T AE
Sbjct: 120 EMSFVDYEDVMDLTEDLIKYVFKKVLGKREELELLG---IELPEFPRI-TYAEAIERYGS 175
Query: 300 DFVQLSYTDAIELLIKAKKKFEFLVK----------WGCDLQSEHERYLTEEAFGGCPVI 349
D L + ++ + + K EF V G E L ++ PV
Sbjct: 176 DKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEENLGDK-DKDNPVF 234
Query: 350 VSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 408
V+D+P FYM +++D D+++ GE+ GGS R E R +EL L+
Sbjct: 235 VTDFPLFEHPFYMPKDEDPPGLAERFDLVLN-GGEIGGGSIRIHDPEEQRKRFEELGLDP 293
Query: 409 DS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456
+ + +YLD YG PH G GLG +RLV TG+E+IR+ I FP+T
Sbjct: 294 EEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVMLLTGLESIREVIAFPKTRK 345
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional.
Length = 437
Score = 256 bits (657), Expect = 8e-81
Identities = 136/442 (30%), Positives = 214/442 (48%), Gaps = 50/442 (11%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEK 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F + D+FEK
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI---DYFEK 182
Query: 198 PAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL-KDD 255
A+L S QL + V+ GP FRAE NTSRHL E+ I+ E+ F D +D
Sbjct: 183 EAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDV 242
Query: 256 MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK 315
M L+Y+ + +NC+++++ + V E +++Y +AIE+L
Sbjct: 243 MDLLENLLRYMYEDVAENCEKELELLGIELP---------VPETPIPRITYDEAIEILKS 293
Query: 316 AKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFY-MRQNDDGRTV 371
+ + WG DL +E ER L E +G ++DYP E + FY M DD
Sbjct: 294 KGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEIS 349
Query: 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLG 431
+ D+L + E+ G QR R + L + E LN +S+ +YL+ YG PH GFGLG
Sbjct: 350 KSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLG 408
Query: 432 FERLVQFATGVENIRDAIPFPR 453
ERL G+ENIR+A+ FPR
Sbjct: 409 LERLTMKLLGLENIREAVLFPR 430
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA
synthetase. In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_arch, represents
aspartyl-tRNA synthetases from the eukaryotic cytosol
and from the Archaea. In some species, this enzyme
aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn)
is subsequently transamidated to Asn-tRNA(asn) [Protein
synthesis, tRNA aminoacylation].
Length = 428
Score = 194 bits (494), Expect = 5e-57
Identities = 129/430 (30%), Positives = 200/430 (46%), Gaps = 27/430 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQL 207
R+R+ + + +F E GFI + +P + AS EG E F +T +FE+ AFL S QL
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT---YFEREAFLGQSPQL 189
Query: 208 NAETY-ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266
+ A VY GP FRAE NT RHL E I+ E+AF D D M + V
Sbjct: 190 YKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRV 249
Query: 267 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 326
+ + C ++ +EK E FV+L+Y +AIE+ + + W
Sbjct: 250 FEDVPERCAHQLETLEFKLEK---------PEGKFVRLTYDEAIEMANAKGVE----IGW 296
Query: 327 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELI 385
G DL +E E+ L EE G ++D+P EI+ FY M D+ + D++ R E+
Sbjct: 297 GEDLSTEAEKALGEEMDG--LYFITDWPTEIRPFYTMPDEDNPEISKSFDLMY-RDLEIS 353
Query: 386 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 445
G+QR + L R+ LN + + YL+ YG PHAG+GLG ER V F G++NI
Sbjct: 354 SGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNI 413
Query: 446 RDAIPFPRTP 455
R+A+ FPR
Sbjct: 414 REAVLFPRDR 423
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed.
Length = 335
Score = 181 bits (462), Expect = 2e-53
Identities = 93/319 (29%), Positives = 162/319 (50%), Gaps = 25/319 (7%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLDFFEKPAFLT 202
V +V++++ T +F GF+ + PII+ S G+ ++DF+ +L
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLA 88
Query: 203 VSGQLNAETYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACAT 260
S L+ + L ++ P FR E +T RHL EF ++ E+ ADL + M
Sbjct: 89 DSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIE 148
Query: 261 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 320
++Y+V+ +L+ +++++FF R +R F ++++ +A+E+L + +
Sbjct: 149 DLIKYLVKELLEEHEDELEFFG---------RDLPHLKRPFKRITHKEAVEILNEEGCRG 199
Query: 321 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT--VAAMDMLV 378
L + G SE E+ L+E P + D PK + FY R+ D R + D+L+
Sbjct: 200 IDLEELG----SEGEKSLSEHF--EEPFWIIDIPKGSREFYDRE-DPERPGVLRNYDLLL 252
Query: 379 P-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQ 437
P GE + G +RE E + R+ E ++ + Y WYL++ G +P AGFG+G ERL +
Sbjct: 253 PEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTR 312
Query: 438 FATGVENIRDAIPFPRTPG 456
+ G+ +IR+ PFPR PG
Sbjct: 313 YICGLRHIREVQPFPRVPG 331
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 145 bits (367), Expect = 3e-38
Identities = 120/466 (25%), Positives = 208/466 (44%), Gaps = 54/466 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTS 234
A EG F LD+ +PA L S QL+ + V+ GP FRAE+S T
Sbjct: 253 IAGASEGGSAVF---RLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTH 309
Query: 235 RHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 293
RHL EF ++ E+ + + + + + + CK++++ + L
Sbjct: 310 RHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYL 369
Query: 294 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPVIV 350
++L++ + I++L +A + + L DL +E ER L +E +G I+
Sbjct: 370 -----PKTLRLTFAEGIQMLKEAGVEVDPL----GDLNTESERKLGQLVKEKYGTDFYIL 420
Query: 351 SDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD 409
YP ++ FY M DD + + D+ + R E+I G+QR E LE R +E ++
Sbjct: 421 HRYPLAVRPFYTMPCPDDPKYSNSFDVFI-RGEEIISGAQRVHDPELLEKRAEECGIDVK 479
Query: 410 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 455
+ Y+D YG+ PH GFG+G ER+V G+ NIR FPR P
Sbjct: 480 TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II
core domain. This domain is the core catalytic domain of
class II aminoacyl-tRNA synthetases of the subgroup
containing aspartyl, lysyl, and asparaginyl tRNA
synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. Nearly all class II tRNA synthetases
are dimers and enzymes in this subgroup are homodimers.
These enzymes attach a specific amino acid to the 3' OH
group of ribose of the appropriate tRNA.
Length = 269
Score = 125 bits (316), Expect = 5e-33
Identities = 70/311 (22%), Positives = 117/311 (37%), Gaps = 50/311 (16%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLN 208
+VR+ + A F + GF+ + +P++ F V +L +S QL
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNAL-GLDYYLRISPQLF 60
Query: 209 AETY-ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 267
+ L V+ FR E +RH EF M++ E+AFAD +D + ++++
Sbjct: 61 KKRLMVGGLDRVFEINRNFRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLA 119
Query: 268 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 327
R +L F + G F +L+Y +A+E
Sbjct: 120 REVLGVTAVTYGFEL--EDFG----------LPFPRLTYREALERY-------------- 153
Query: 328 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 387
G P+ ++DYP E+ + +D +A L E+ G
Sbjct: 154 -----------------GQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNG 196
Query: 388 SQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443
S R + E +N + + +YL YG PH G G+G +RL+ T
Sbjct: 197 SSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSP 256
Query: 444 NIRDAIPFPRT 454
IR+ I FP+
Sbjct: 257 TIREVIAFPKM 267
>gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Escherichia coli
asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis
thaliana and Saccharomyces cerevisiae mitochondrial (mt)
AsnRS. This domain is a beta-barrel domain (OB fold)
involved in binding the tRNA anticodon stem-loop. The
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Eukaryotes contain 2 sets of aaRSs, both of which are
encoded by the nuclear genome. One set concerns with
cytoplasmic protein synthesis, whereas the other
exclusively with mitochondrial protein synthesis. S.
cerevisiae mtAsnRS can charge E.coli tRNA with
asparagines. Mutations in the gene for S. cerevisiae
mtAsnRS has been found to induce a "petite" phenotype
typical for a mutation in a nuclear gene that results in
a non-functioning mitochondrial protein synthesis
system.
Length = 82
Score = 111 bits (281), Expect = 3e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional.
Length = 550
Score = 115 bits (288), Expect = 1e-27
Identities = 126/481 (26%), Positives = 204/481 (42%), Gaps = 61/481 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
L++F + A+L S QL + + V+ GP FR+ENSNT RHL EF ++ E
Sbjct: 253 ---KLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVE 309
Query: 247 LA---------------FADLKDDMACATAYLQYVVR------YILDNCKEDMDFFNTW- 284
+ F + + +A T L+ V + + E M
Sbjct: 310 MRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGV 369
Query: 285 IEKGIID------RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY- 337
I +G+ R+ + R ++++Y IELL E + D+ + +E+
Sbjct: 370 ISEGVEPTDKYQARVHNMDSR-MLRINYMHCIELL---NTVLEEKMAPTDDINTTNEKLL 425
Query: 338 --LTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 394
L +E +G I +P + FY M DD R + DM + R E+ G+QR
Sbjct: 426 GKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFI-RGEEISSGAQRIHDP 484
Query: 395 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
+ L R L ++ Y+D G+ PH GFG+G ER+V G+ N+R A FPR
Sbjct: 485 DLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRD 544
Query: 455 P 455
P
Sbjct: 545 P 545
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon
recognition domain of class 2b aminoacyl-tRNA
synthetases (aaRSs). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. Class 2b aaRSs include the homodimeric
aspartyl-, asparaginyl-, and lysyl-tRNA synthetases
(AspRS, AsnRS, and LysRS). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
protein synthesis, whereas the other exclusively with
mitochondrial protein synthesis. Included in this group
are archeal and archeal-like AspRSs which are
non-discriminating and can charge both tRNAAsp and
tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS
and LysU) encoded by two distinct genes, which are
differentially regulated. The cytoplasmic and the
mitochondrial isoforms of human LysRS are encoded by a
single gene. Yeast cytoplasmic and mitochondrial LysRSs
participate in mitochondrial import of cytoplasmic
tRNAlysCUU. In addition to their housekeeping role,
human LysRS may function as a signaling molecule that
activates immune cells. Tomato LysRS may participate in
a process possibly connected to conditions of
oxidative-stress conditions or heavy metal uptake. It is
known that human tRNAlys and LysRS are specifically
packaged into HIV-1 suggesting a role for LysRS in tRNA
packaging. AsnRS is immunodominant antigen of the
filarial nematode Brugia malayai and is of interest as a
target for anti-parasitic drug design. Human AsnRS has
been shown to be a pro-inflammatory chemokine which
interacts with CCR3 chemokine receptors on T cells,
immature dendritic cells and macrophages.
Length = 85
Score = 71.4 bits (176), Expect = 1e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and
non-spirochete bacterial. This model represents the
lysyl-tRNA synthetases that are class II amino-acyl tRNA
synthetases. It includes all eukaryotic and most
bacterial examples of the enzyme, but not archaeal or
spirochete forms [Protein synthesis, tRNA
aminoacylation].
Length = 496
Score = 78.6 bits (194), Expect = 1e-15
Identities = 105/476 (22%), Positives = 178/476 (37%), Gaps = 76/476 (15%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++ GA
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQ-VIPGGANA------- 208
Query: 193 DFFEKPAFLTVSGQLNAETY---ATAL----------SNVYTFGPTFRAENSNTSRHLAE 239
+P F+T L+ + Y A L VY G FR E +T H E
Sbjct: 209 ----RP-FITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDT-THNPE 262
Query: 240 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLS 294
F MIE A+AD +D M +++ + +L K ++DF + +++ +
Sbjct: 263 FTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIK 322
Query: 295 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC-------P 347
+ E KK V L H + E F P
Sbjct: 323 KYDMETGIDFDDLKDFETAKALAKKIGIEVA-EKSLTLGH---ILNELFEQFLEHTLIQP 378
Query: 348 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG--------SQREERLEYLEG 399
++ YP EI ++N L E+ QRE + +
Sbjct: 379 TFITHYPAEISPL-AKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAE 437
Query: 400 RL---DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
+ DE + + + L+ YG P G G+G +RLV T ++IRD I FP
Sbjct: 438 KEAGDDEAQFVDEDFVEALE---YGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation,
ribosomal structure and biogenesis].
Length = 502
Score = 77.2 bits (191), Expect = 3e-15
Identities = 107/486 (22%), Positives = 190/486 (39%), Gaps = 96/486 (19%)
Query: 21 PNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKS 77
E L+ + + + VAG + T+R +F ++ DGS +Q + D G ++ +
Sbjct: 53 TKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGS--GKIQLYVNKDEVGEEVFEALFK 110
Query: 78 GLITTGASIWIQGNVVPSQGSKQKVEL--KVNKIVLVGKS-DP------SYPIQKKRVSR 128
+ G I ++G + + EL V ++ L+ KS P ++ R +
Sbjct: 111 -KLDLGDIIGVEGPL----FKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQ 165
Query: 129 EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPI---ITASDCEGAGE 185
+L + R TF +++ A+ +F + GF+ + +P+ I GA
Sbjct: 166 RYLDLIVNPESR-QTFIKRSKIIRAI----REFLDDRGFLEVETPMLQPIPG----GAAA 216
Query: 186 QFCVTTLDFFEKPAFLTVSGQLNAETYATALS--------NVYTFGPTFRAENSNTSRHL 237
+ +T + + +L ++ +L L V+ G FR E +T H
Sbjct: 217 RPFITHHNALDMDLYLRIAPEL-------YLKRLIVGGFERVFEIGRNFRNEGIDT-THN 268
Query: 238 AEFWMIEPELAFADLKDDMACATAYLQYVVR-----YILDNCKEDMDFFNTWIEKGIIDR 292
EF M+E A+AD +D M ++ + + + +++DF + ++D
Sbjct: 269 PEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDA 328
Query: 293 LSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC----DLQSEHERYLTEEAFGGC 346
L DF L + D A EL K + E WG + E L E
Sbjct: 329 LKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEE---LVEAKLIQ- 383
Query: 347 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGGSQRE----------- 391
P V+D+P EI +++ P + E IGG +E
Sbjct: 384 PTFVTDHPVEISPL-AKRHRSN----------PGLTERFELFIGG--KEIANAYSELNDP 430
Query: 392 -ERLEYLEGRLDELKLNRDSY----WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 446
++ E E +++E + D +++ YG P G G+G +RLV T +IR
Sbjct: 431 VDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIR 490
Query: 447 DAIPFP 452
D I FP
Sbjct: 491 DVILFP 496
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core
domain. Class II assignment is based upon its structure
and the presence of three characteristic sequence
motifs. AspRS is a homodimer, which attaches a specific
amino acid to the 3' OH group of ribose of the
appropriate tRNA. The catalytic core domain is primarily
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. AspRS in this family
differ from those found in the AsxRS family by a GAD
insert in the core domain.
Length = 280
Score = 69.9 bits (172), Expect = 2e-13
Identities = 85/328 (25%), Positives = 132/328 (40%), Gaps = 73/328 (22%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL----DFFEKPA----- 199
R+R+ + A F E GF+ I +PI+T S EGA + F V + F+ P
Sbjct: 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLF 60
Query: 200 --FLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 257
L VSG + Y + FR E+ R EF I+ E++F D +D M+
Sbjct: 61 KQLLMVSG---FDRY-------FQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMS 109
Query: 258 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 317
L+YV + + + F +++Y +A+E +
Sbjct: 110 LIEGLLKYVFK----------EVLGVELTT------------PFPRMTYAEAME-----R 142
Query: 318 KKFEFLVKWGCD-----LQSEHERYL-TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 371
F+FL W D E R + F + +++ D
Sbjct: 143 YGFKFL--WIVDFPLFEWDEEEGRLVSAHHPF------TAPKEEDLDLLE---KDPEDAR 191
Query: 372 A-AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW----WYLDLRHYGSVPHA 426
A A D+++ + EL GGS R + E + L L+ + + L+ YG+ PH
Sbjct: 192 AQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHG 250
Query: 427 GFGLGFERLVQFATGVENIRDAIPFPRT 454
G LG +RLV TG E+IRD I FP+T
Sbjct: 251 GIALGLDRLVMLLTGSESIRDVIAFPKT 278
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 62.4 bits (151), Expect = 2e-10
Identities = 102/469 (21%), Positives = 184/469 (39%), Gaps = 65/469 (13%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 58 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 115
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 116 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 168
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++ + F
Sbjct: 169 QRYLDLIANDKSR-QTF----VVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF 223
Query: 188 CVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
+T + + +L ++ +L + V+ FR E + RH EF M+E
Sbjct: 224 -ITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV-RHNPEFTMMELY 281
Query: 247 LAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTVAE 298
+A+AD D + + + + + +L K DF F + I + E
Sbjct: 282 MAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR--PE 339
Query: 299 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGCPVIVSD 352
D L DA + L ++ WG R +TE EA P +++
Sbjct: 340 TDMADLDNFDAAKALAES-IGITVEKSWGLG------RIVTEIFDEVAEAHLIQPTFITE 392
Query: 353 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG-----SQREERLEYLEGRLDELKLN 407
YP E+ R + + + + G IG + E++ E + +++
Sbjct: 393 YPAEVSPLARRNDVNPEITDRFEFFIG--GREIGNGFSELNDAEDQAERFQEQVNAKAAG 450
Query: 408 RDSYWW----YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
D + Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 451 DDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 499
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core
domain. Class II LysRS is a dimer which attaches a
lysine to the 3' OH group of ribose of the appropriate
tRNA. Its assignment to class II aaRS is based upon its
structure and the presence of three characteristic
sequence motifs in the core domain. It is found in
eukaryotes as well as some prokaryotes and archaea.
However, LysRS belongs to class I aaRS's in some
prokaryotes and archaea. The catalytic core domain is
primarily responsible for the ATP-dependent formation of
the enzyme bound aminoacyl-adenylate.
Length = 329
Score = 58.8 bits (143), Expect = 1e-09
Identities = 67/269 (24%), Positives = 93/269 (34%), Gaps = 57/269 (21%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED- 277
VY G FR E + H EF MIE A+AD D M +V+ I K +
Sbjct: 79 VYEIGRNFRNEGIDL-THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEY 137
Query: 278 ----MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
+DF + ++D L DF +L EL K L+K +
Sbjct: 138 GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELA----KLLAKLIKEKIEKPRT 193
Query: 334 HERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 386
+ L ++ F P + D+P EI R + L R I
Sbjct: 194 LGKLL-DKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPG-------LTERFELFIC 245
Query: 387 GS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYGSV 423
G QRE E + + +DE D ++ YG
Sbjct: 246 GKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDE-----D----FVTALEYGMP 296
Query: 424 PHAGFGLGFERLVQFATGVENIRDAIPFP 452
P G G+G +RLV T +IRD I FP
Sbjct: 297 PTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type.
Asparate--tRNA ligases in this family may be
discriminating (6.1.1.12) or nondiscriminating
(6.1.1.23). In a multiple sequence alignment of
representative asparaginyl-tRNA synthetases (asnS),
archaeal/eukaryotic type aspartyl-tRNA synthetases
(aspS_arch), and bacterial type aspartyl-tRNA
synthetases (aspS_bact), there is a striking similarity
between asnS and aspS_arch in gap pattern and in
sequence, and a striking divergence of aspS_bact.
Consequently, a separate model was built for each of the
three groups. This model, aspS_bact, represents
aspartyl-tRNA synthetases from the Bacteria and from
mitochondria. In some species, this enzyme aminoacylates
tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently
transamidated to Asn-tRNA(asn). This model generates
very low scores for the archaeal type of aspS and for
asnS; scores between the trusted and noise cutoffs
represent fragmentary sequences [Protein synthesis, tRNA
aminoacylation].
Length = 583
Score = 57.1 bits (138), Expect = 9e-09
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 383 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 438
EL GGS R E + + L ++ R+ + + L+ YG+ PHAGF LG +RL+
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 439 ATGVENIRDAIPFPRT 454
TG +NIRD I FP+T
Sbjct: 538 LTGTDNIRDVIAFPKT 553
Score = 52.4 bits (126), Expect = 3e-07
Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 19/252 (7%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPA 199
R ++R+ + A F + GF+ I +P++T S EGA + + V + K
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-YLVPSR--VHKGE 186
Query: 200 F--LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 256
F L S QL + + + Y FR E+ R EF I+ E++F +D M
Sbjct: 187 FYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVM 245
Query: 257 ACATAYLQYVVR 268
+ +V
Sbjct: 246 ELIEKLVSHVFL 257
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
Length = 491
Score = 57.0 bits (139), Expect = 1e-08
Identities = 68/275 (24%), Positives = 102/275 (37%), Gaps = 73/275 (26%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
VY G FR E +T RH EF M+E A+AD D M ++++ + +L K
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 QGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG------ 355
Query: 334 HERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE- 383
L E F P ++DYP EI A +++ + P + E
Sbjct: 356 ---KLINELFEEFVEPKLIQPTFITDYPVEISPLA---KRHRE----------DPGLTER 399
Query: 384 ---LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 417
IGG QRE +E + +DE D +L
Sbjct: 400 FELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDE-----D----FLRA 450
Query: 418 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P G G+G +RLV T +IRD I FP
Sbjct: 451 LEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 585
Score = 54.5 bits (132), Expect = 6e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PH G G +RLV TG E+IRD I FP+T
Sbjct: 522 YGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKT 556
Score = 46.0 bits (110), Expect = 3e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 50.6 bits (121), Expect = 4e-07
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIIT-ASDCEGAGEQFCVTT-------LDFFEKPAFL 201
+R+ + +F E GF + +PI+ E AG + D + +P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLE 60
Query: 202 TVSGQLNAETYATALSNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFAD 251
+L + GP FR E R + EF +E E+ D
Sbjct: 61 PGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGED 111
Score = 31.7 bits (72), Expect = 0.58
Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 329 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 388
+L E L V V P E G + D R E+ G
Sbjct: 120 ELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAG---PGFEIEV-DHPEGRGLEIGSGG 175
Query: 389 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 435
R++ D Y+ L Y P GFGLG ERL
Sbjct: 176 YRQDEQARAA----------DLYFLDEALE-YRYPPTIGFGLGLERL 211
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated.
Length = 588
Score = 51.2 bits (124), Expect = 6e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PH G G +RLV G ++IRD I FP+T
Sbjct: 524 YGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKT 558
Score = 42.7 bits (102), Expect = 3e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
>gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal,
anticodon recognition domain of the type found in human
and Saccharomyces cerevisiae cytoplasmic
asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai
AsnRs and, in various putative bacterial AsnRSs. This
domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop. The enzymes in
this group are homodimeric class2b aminoacyl-tRNA
synthetases (aaRSs). aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation of the AA by ATP in the
presence of magnesium ions, followed by ii) the transfer
of the activated AA to the terminal ribose of tRNA. In
the case of the class2b aaRSs, the activated AA is
attached to the 3'OH of the terminal ribose. Eukaryotes
contain 2 sets of aaRSs, both of which are encoded by
the nuclear genome. One set concerns with cytoplasmic
synthesis, whereas the other exclusively with
mitochondrial protein synthesis. AsnRS is
immunodominant antigen of the filarial nematode B.
malayai and of interest as a target for anti-parasitic
drug design. Human AsnRS has been shown to be a
pro-inflammatory chemokine which interacts with CCR3
chemokine receptors on T cells, immature dendritic cells
and macrophages.
Length = 84
Score = 45.7 bits (109), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase.
Length = 652
Score = 47.5 bits (113), Expect = 1e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGF 428
A DM V E+ GGS R R + + L+ + L+ + + L+ G+ PH G
Sbjct: 537 AYDM-VYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGI 595
Query: 429 GLGFERLVQFATGVENIRDAIPFPRT 454
G +RLV G ++IRD I FP+T
Sbjct: 596 AYGLDRLVMLLAGAKSIRDVIAFPKT 621
Score = 39.4 bits (92), Expect = 0.003
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 42/254 (16%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA + +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPS 246
Query: 191 TL---DFFEKP-------AFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEF 240
+ F+ P L VSG + Y Y FR E+ R EF
Sbjct: 247 RVQPGTFYALPQSPQLFKQMLMVSG---FDRY-------YQIARCFRDEDLRADRQ-PEF 295
Query: 241 WMIEPELAFADLKD 254
++ ELAF L+D
Sbjct: 296 TQLDMELAFTPLED 309
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 45.8 bits (109), Expect = 4e-05
Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
VY G FR E +T RH EF E A+AD D M + +V+ + + K
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKY 358
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVKWGCDLQS 332
++DF + +I + DF L +A LI A +KF+ C
Sbjct: 359 HGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDV----KCPPPQ 414
Query: 333 EHERYLTE--EAFG--GC--PVIVSDYPKEIK--AFYMRQNDD----------GRTVA-A 373
R L E E F P V D+P E+ A R GR +A A
Sbjct: 415 TTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANA 474
Query: 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR--DSYWWYLD------LRHYGSVPH 425
L + QRE R E +++K + D LD L YG P
Sbjct: 475 FSELTDPV------DQRE-RFE------EQVKQHNAGDDEAMALDEDFCTALE-YGLPPT 520
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFP 452
G+GLG +RLV T +IRD I FP
Sbjct: 521 GGWGLGIDRLVMLLTDSASIRDVIAFP 547
>gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon
recognition domain of the type found in Saccharomyces
cerevisiae and human cytoplasmic aspartyl-tRNA
synthetase (AspRS). This domain is a beta-barrel domain
(OB fold) involved in binding the tRNA anticodon
stem-loop. The enzymes in this group are homodimeric
class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs
catalyze the specific attachment of amino acids (AAs) to
their cognate tRNAs during protein biosynthesis. This
2-step reaction involves i) the activation of the AA by
ATP in the presence of magnesium ions, followed by ii)
the transfer of the activated AA to the terminal ribose
of tRNA. In the case of the class2b aaRSs, the
activated AA is attached to the 3'OH of the terminal
ribose. Eukaryotes contain 2 sets of aaRSs, both of
which are encoded by the nuclear genome. One set
concerns with cytoplasmic protein synthesis, whereas the
other exclusively with mitochondrial protein synthesis.
Length = 102
Score = 38.3 bits (90), Expect = 8e-04
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
>gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon
recognition domain of the type found in Pyrococcus
horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS).
This domain is a beta-barrel domain (OB fold) involved
in binding the tRNA anticodon stem-loop. The archeal
enzymes in this group are homodimeric class2b
aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the
specific attachment of amino acids (AAs) to their
cognate tRNAs during protein biosynthesis. This 2-step
reaction involves i) the activation of the AA by ATP in
the presence of magnesium ions, followed by ii) the
transfer of the activated AA to the terminal ribose of
tRNA. In the case of the class2b aaRSs, the activated
AA is attached to the 3'OH of the terminal ribose.
Length = 103
Score = 36.3 bits (84), Expect = 0.004
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQ 89
+ +AGWV R FI + D + + +Q V + D E Y + K + +S+ ++
Sbjct: 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVE 57
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL 137
G V + E+ K+ ++ + +PI + S EFL HL
Sbjct: 58 GAVKADPRAPGGAEVHGEKLEIIQNVEF-FPITED-ASDEFLLDVRHL 103
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 37.3 bits (86), Expect = 0.016
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 383 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 438
EL GGS R + L L+ D + ++L + + PH G LG +R+V
Sbjct: 499 ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSM 558
Query: 439 ATGVENIRDAIPFPR 453
+IR+ I FP+
Sbjct: 559 ILQTPSIREVIAFPK 573
Score = 36.9 bits (85), Expect = 0.022
Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 36/257 (14%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSG 78
+ LD G + +AGWV R + FI + D + +Q V + +A Y+ S
Sbjct: 11 HLSLDDTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS- 67
Query: 79 LITTGASIWIQGNV---VPSQGSKQ----KVELKVNKIVLVGKSDP-SYPIQKK------ 124
+ + +QG V + + +E+ V ++ ++ S+ + I K
Sbjct: 68 -LRAEFCVALQGEVQKRLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGA 126
Query: 125 ------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
V+ + +L R R+ + F GF+ I +PI+T S
Sbjct: 127 GSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKS 186
Query: 179 DCEGAGEQFCVTTL---DFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTS 234
EGA + + + +F+ P S QL + A + FR E+ +
Sbjct: 187 TPEGARDYLVPSRIHPKEFYALPQ----SPQLFKQLLMIAGFERYFQLARCFRDEDLRPN 242
Query: 235 RHLAEFWMIEPELAFAD 251
R EF ++ E +F D
Sbjct: 243 RQ-PEFTQLDIEASFID 258
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 37.3 bits (86), Expect = 0.017
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 421 GSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
G P AG+G+G +R + T NIRD I FP
Sbjct: 529 GLPPTAGWGMGIDRALMLLTNSSNIRDGIIFP 560
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 36.9 bits (86), Expect = 0.026
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
Y P G G+G +RLV TG +IR+ +PFP
Sbjct: 1057 YAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFP 1088
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 36.5 bits (84), Expect = 0.032
Identities = 76/415 (18%), Positives = 153/415 (36%), Gaps = 46/415 (11%)
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV--NKIVLVGKSDPSYPIQKKRV 126
AE YD+++ G I +V G +K EL + + +++ P++
Sbjct: 180 AECYDKIRRGDIV---------GIVGFPGKSKKGELSIFPKETIILSPCLHMLPMKYGLK 230
Query: 127 SREFLRTKAHLRPRTN-----TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
E + +L N TF ++ N L F + GFI + +P +
Sbjct: 231 DTEIRYRQRYLDLMINESTRSTFITRTKIINYL----RNFLNDRGFIEVETPTMNLV-AG 285
Query: 182 GAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEF 240
GA + +T + + +L ++ +L + + VY G FR E + + H EF
Sbjct: 286 GANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNT-HNPEF 344
Query: 241 WMIEPELAFADLKDDMACATAYLQYVVRYIL------------DNCKEDMDFFNTWIEKG 288
E A+AD D + + + +V ++ + ++DF + +
Sbjct: 345 TSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVS 404
Query: 289 IIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVK---WGCDLQSEHERYLTEEAFG 344
I++ L + Q + I +I K+ + + L + + E +
Sbjct: 405 IVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYP 464
Query: 345 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE----GR 400
P + ++P+ + ++M + L ++ + + E +
Sbjct: 465 NKPFFIIEHPQIMSPLAKYHRSKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQ 524
Query: 401 LDELKLNRDSYWW---YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
D K + +++ + + YG P G GLG +R+ F T I+D I FP
Sbjct: 525 KDREKGDAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFP 579
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA
synthetase (class II) [Translation, ribosomal structure
and biogenesis].
Length = 322
Score = 33.5 bits (77), Expect = 0.19
Identities = 73/325 (22%), Positives = 108/325 (33%), Gaps = 46/325 (14%)
Query: 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL--DFFE------KPAFLT 202
R A+ A +FF E G + + +P ++ + + +F KP +L
Sbjct: 19 RAAIIAAIRRFFAERGVLEVETPALSVA----PVTDIHLHPFETEFLGPGGAKGKPLWLH 74
Query: 203 VSGQLNAETYATALSN-VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 261
S + + + A S ++ G FR E H EF M+E D M
Sbjct: 75 TSPEYHMKRLLAAGSGPIFQLGKVFRNE-EMGRLHNPEFTMLEWYRVGCDYYRLMNEVDD 133
Query: 262 YLQYVVRYILDNCK--EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK 319
LQ V+ C E + + ++ ID LS L +A K
Sbjct: 134 LLQLVLE-----CVEAERLSYQEAFLRYLGIDPLSA-------------DKTELREAAAK 175
Query: 320 FEFLVKWGCDLQSEHERYLT---EEAFG-GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMD 375
D + + E G P + +P A D R VA
Sbjct: 176 LGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQISTGDPR-VAERF 234
Query: 376 MLVPRIGELIGG----SQREERLEYLEGRLDE-LKLNRDSYWWYLDLRHYGSV--PHAGF 428
L + EL G + E+ E E + Y D + P +G
Sbjct: 235 ELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALARMPPCSGV 294
Query: 429 GLGFERLVQFATGVENIRDAIPFPR 453
LGF+RLV A G E+I D I FP
Sbjct: 295 ALGFDRLVMLALGAESIDDVIAFPV 319
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
Other tRNA synthetase sub-families are too dissimilar
to be included. This family includes only
phenylalanyl-tRNA synthetases. This is the core
catalytic domain.
Length = 245
Score = 32.5 bits (75), Expect = 0.37
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 417 LRHYG---SVPHAGFGLGFERLVQFATGVENIRD 447
L G P FGLG ERL G+++IRD
Sbjct: 200 LEAVGIDEEYPGFAFGLGVERLAMLKYGIDDIRD 233
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative
bacteria have a protein closely homologous to the
C-terminal region of lysyl-tRNA synthetase (LysS).
Multiple sequence alignment of these proteins with the
homologous regions of collected LysS proteins shows that
these proteins form a distinct set rather than just
similar truncations of LysS. The protein is termed GenX
after its designation in E. coli. Interestingly, genX
often is located near a homolog of
lysine-2,3-aminomutase. Its function is unknown [Unknown
function, General].
Length = 290
Score = 31.4 bits (72), Expect = 0.82
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 426 AGFGLGFERLVQFATGVENIRDAIP 450
+G LG +RL+ A G ++I D +
Sbjct: 266 SGVALGVDRLLMLALGADSIDDVLA 290
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 30.7 bits (70), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 428 FGLGFERLVQFATGVENIRD 447
FGLG ERL G+ +IRD
Sbjct: 305 FGLGLERLAMLKYGIPDIRD 324
>gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal,
anticodon recognition domain of the type found in the
homodimeric non-discriminating (ND) Pyrococcus
kodakaraensis aspartyl-tRNA synthetase (AspRS). This
domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop. P. kodakaraensis
AspRS is a class 2b aaRS. aaRSs catalyze the specific
attachment of amino acids (AAs) to their cognate tRNAs
during protein biosynthesis. This 2-step reaction
involves i) the activation the AA by ATP in the presence
of magnesium ions, followed by ii) the transfer of the
activated AA to the terminal ribose of tRNA. In the
case of the class2b aaRSs, the activated AA is attached
to the 3'OH of the terminal ribose. P. kodakaraensis
ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of
the enzymes in this group may be discriminating, based
on the presence of homologs of asparaginyl-tRNA
synthetase (AsnRS) in their completed genomes.
Length = 108
Score = 28.8 bits (65), Expect = 1.9
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS-IWIQG 90
+ VAGWV +R + F+ + D + +Q + K+ + S I + G
Sbjct: 15 VTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRKLSRESVISVTG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
V + VE+ +I ++ ++ P+
Sbjct: 73 TVKAEPKAPNGVEIIPEEIEVLSEAKTPLPL 103
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS)
alpha chain catalytic core domain. PheRS belongs to
class II aminoacyl-tRNA synthetases (aaRS) based upon
its structure and the presence of three characteristic
sequence motifs. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. While class II aaRSs generally
aminoacylate the 3'-OH ribose of the appropriate tRNA,
PheRS is an exception in that it attaches the amino acid
at the 2'-OH group, like class I aaRSs. PheRS is an
alpha-2/ beta-2 tetramer.
Length = 218
Score = 29.1 bits (66), Expect = 3.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 428 FGLGFERLVQFATGVENIRD 447
FG+G ERL G+ +IR
Sbjct: 192 FGIGLERLAMLKYGIPDIRL 211
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 29.0 bits (66), Expect = 6.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 423 VPHAGFGLGFERLVQFATGVENIRD 447
VP +GLG ERL G+++IRD
Sbjct: 452 VPVLAWGLGIERLAMLRLGLDDIRD 476
>gnl|CDD|238567 cd01147, HemV-2, Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 262
Score = 28.5 bits (64), Expect = 6.5
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 345 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR-EERLEYLEGRLDE 403
G PV+V D ++ + +G+++G +R EE + ++E L +
Sbjct: 98 GIPVVVLDGGD--------------SLEDTPEQIRLLGKVLGKEERAEELISFIESILAD 143
Query: 404 LK 405
++
Sbjct: 144 VE 145
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 28.7 bits (65), Expect = 8.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 285 IEKGIIDRLSTVAERDFVQLSY-TDAIELLIKAKKKFEFLVKWGCD 329
+E + D++ T+A++ Y D +EL KAKKK K G
Sbjct: 424 LEDPLEDKIETIAKK-----IYGADGVELSPKAKKKLARYEKQGFG 464
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,773,520
Number of extensions: 2327747
Number of successful extensions: 2086
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2003
Number of HSP's successfully gapped: 75
Length of query: 460
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 360
Effective length of database: 6,502,202
Effective search space: 2340792720
Effective search space used: 2340792720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)