RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012612
(460 letters)
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 661 bits (1708), Expect = 0.0
Identities = 154/456 (33%), Positives = 235/456 (51%), Gaps = 31/456 (6%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245
F + +F+K A+L+ S QL E L V++ P+FRAE S T RHL EFW +E
Sbjct: 173 LFKL---KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLEL 229
Query: 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 305
E A+ DL D M + Y+V+ L+ K++++ F + E F ++S
Sbjct: 230 EAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTT------LKNTEPPFPRIS 283
Query: 306 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365
Y +AI++L E WG DL ++ ER LTEE F P V YPK IKAFYM+++
Sbjct: 284 YDEAIDILQSKGVNVE----WGDDLGADEERVLTEE-FDR-PFFVYGYPKHIKAFYMKED 337
Query: 366 -DDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV 423
+D R V A DML P GE+IGGSQRE+ + L R+ E ++ Y WYLDLR YGSV
Sbjct: 338 PNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSV 397
Query: 424 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
PH+GFGLG ERLV + +++IR A FPRTP +
Sbjct: 398 PHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 655 bits (1692), Expect = 0.0
Identities = 126/463 (27%), Positives = 208/463 (44%), Gaps = 36/463 (7%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 238
CEG F + +F +PA+LT S QL E+ +L + ++RAE S T RHLA
Sbjct: 187 QCEGGSTLFKL---QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLA 243
Query: 239 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 298
E+ +E EL F +D + + V+ ++ + + N ++ +
Sbjct: 244 EYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPT 294
Query: 299 RDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 357
R F +++Y DAI+ + ++G D+ + ER +T+E GCP+ + +P ++
Sbjct: 295 RPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI--GCPIFMIHFPSKM 352
Query: 358 KAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 416
KAFYM + ++D+L+P +GE++GGS R + L G LN D Y+WY
Sbjct: 353 KAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQ 412
Query: 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
R YGS PH G+GLG ERLV + G ++IR +PR E
Sbjct: 413 QRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 653 bits (1686), Expect = 0.0
Identities = 120/443 (27%), Positives = 209/443 (47%), Gaps = 25/443 (5%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFE 196
L R A+ R+R A A + F G++ ++ P + + EG F + D+F
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL---DYFG 177
Query: 197 KPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 256
+ +FLT S QL ET L +V+ ++RAE S T RHLAE+ +E E F L D M
Sbjct: 178 EQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLM 237
Query: 257 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 316
+ V +L + + I ER F+++ Y DAI+ L +
Sbjct: 238 EKIEELVCDTVDRLLADE--EAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEH 290
Query: 317 --KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAA 373
+ +F +G D+ ER++T+ P++++ +P EIKAFYM+++ D +
Sbjct: 291 NVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAQDNTLTES 348
Query: 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 433
+D+L+P +GE++GGS R + + L ++++ Y+WYLD R YG+ PH G+GLG E
Sbjct: 349 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLE 408
Query: 434 RLVQFATGVENIRDAIPFPRTPG 456
R + + T +IRD +PR G
Sbjct: 409 RFICWLTNTNHIRDVCLYPRFVG 431
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 559 bits (1442), Expect = 0.0
Identities = 124/454 (27%), Positives = 209/454 (46%), Gaps = 30/454 (6%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245
F + +F K AFL S QL E A + V+ P +RAE S+T HLAEF ++
Sbjct: 172 LF---PVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDV 228
Query: 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 305
E+AFAD D M L +V+ I + KE++ N + + +L
Sbjct: 229 EMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE---------VKIPIKRLK 279
Query: 306 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365
YT+AIE+L + +G D+ + R L EE + D+P + + FY +
Sbjct: 280 YTEAIEILRSKGYNIK----FGDDIGTPELRILNEE-LKEDLYFIVDWPSDARPFYTKSK 334
Query: 366 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH 425
+ ++ L+ + E++ GS R + E LE L + L +S+ ++L YG PH
Sbjct: 335 SENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPH 394
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
AGFG+G RL+ TG++++++ +PFPR +
Sbjct: 395 AGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT 428
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 556 bits (1436), Expect = 0.0
Identities = 129/444 (29%), Positives = 212/444 (47%), Gaps = 29/444 (6%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFL 201
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + +FE+ AFL
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELF---PMKYFEEDAFL 187
Query: 202 TVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACA 259
S QL + A+ L VY P FRAE NT+RHL E W I+ E+AF D ++ M+
Sbjct: 188 AQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFL 247
Query: 260 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK 319
+ + + Y+ ++ +++D N +E+ + F ++SY A+E+L K+
Sbjct: 248 ERLVAHAINYVREHNAKELDILNFELEEP---------KLPFPRVSYDKALEILGDLGKE 298
Query: 320 FEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMD 375
WG D+ +E ER L + E + YP E K FY M+ ++ A D
Sbjct: 299 IP----WGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFD 354
Query: 376 MLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 435
+ R E+ G QRE R + L ++ E LN +S+ +YL YG PH GFGLG ERL
Sbjct: 355 LEY-RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERL 413
Query: 436 VQFATGVENIRDAIPFPRTPGSVE 459
++ + NIR+ I FPR +
Sbjct: 414 IKQMLDLPNIREVILFPRDRRRLT 437
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 514 bits (1325), Expect = 0.0
Identities = 111/457 (24%), Positives = 200/457 (43%), Gaps = 45/457 (9%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
F +D+FEK A+L S QL + VY P +R E +TSRHL E+ ++ E
Sbjct: 164 F---GVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVE 220
Query: 247 LAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 305
+ F AD +D M A L ++ L+ +++ +D +L+
Sbjct: 221 MGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFPQDIPRLT 271
Query: 306 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYM 362
+ +A +L K++ G DL E ER L E E +G + V+ YP+ ++ FY
Sbjct: 272 HAEAKRIL---KEELG--YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYT 326
Query: 363 RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 422
+DG T + D+L + E+ G QR R E L L ++ +++ YL++ YG
Sbjct: 327 YPEEDGTT-RSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGM 384
Query: 423 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
PH GF +G ERL Q G+ N+R A FPR +
Sbjct: 385 PPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLT 421
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 483 bits (1245), Expect = e-172
Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 52/332 (15%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----SDCEGAGEQFCVT 190
+ + ++ + FF + GF W+ II+ + AGE
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 191 TLDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPEL 247
++ + LT S L+ + A L ++ P R E+ + RH EF ++ E+
Sbjct: 62 EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEV 121
Query: 248 AFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYT 307
A ++D M + + R + + F Y+
Sbjct: 122 ERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK-----------------RFEVFEYS 164
Query: 308 DAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 367
+ +E ++G D ++ E P + + P+E FY R+ D
Sbjct: 165 EVLE-------------EFGSDEKASQEM--------EEPFWIINIPRE---FYDREVDG 200
Query: 368 GRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PH 425
D+++P GE+ G +RE E + ++ + LN DS+ YL++ G + P
Sbjct: 201 --FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPS 258
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFPRTPGS 457
AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 259 AGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 473 bits (1219), Expect = e-165
Identities = 110/483 (22%), Positives = 206/483 (42%), Gaps = 49/483 (10%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTF 222
F + +P + + EG F + +F+ A+L S Q N + A VY
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVF---EVTYFKGKAYLAQSPQFNKQQLIVADFERVYEI 250
Query: 223 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFF 281
GP FRAENSNT RH+ EF ++ E+AF + + + + ++ + +++
Sbjct: 251 GPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELV 310
Query: 282 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE- 340
++ + V+L+Y + IE+L A K+ DL +E+E++L +
Sbjct: 311 RKQYP---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIG----DFEDLSTENEKFLGKL 363
Query: 341 --EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 398
+ + I+ +P EI+ FY + + R E++ G+QR L+
Sbjct: 364 VRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQ 423
Query: 399 GRLDELKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456
R+ L+ + Y D YG PHAG G+G ER+V F ++NIR A FPR P
Sbjct: 424 ERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPK 483
Query: 457 SVE 459
+
Sbjct: 484 RLR 486
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 419 bits (1079), Expect = e-143
Identities = 90/376 (23%), Positives = 153/376 (40%), Gaps = 20/376 (5%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNA 209
+++A +F F+ I +P + EG F + +F++ A+L S QL
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIF---EVKYFDRKAYLAQSPQLYK 302
Query: 210 ETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVV 267
+ V+ GP FRAENSNT RHL EF ++ E+ + + + ++
Sbjct: 303 QMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIF 362
Query: 268 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 327
I +++ + R F++L+Y +AIE+L + +
Sbjct: 363 DEIPKRFPDELKVIRKQYPF------EDLIYRPFLRLTYKEAIEMLRASGETIG----DY 412
Query: 328 CDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGE 383
D + E L E + I+ +P I+ FY M DD + D+ V E
Sbjct: 413 DDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QE 471
Query: 384 LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443
+ G+QR E+L R E ++ + Y++ +GS PHAG G+G ER+ G+
Sbjct: 472 ITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIP 531
Query: 444 NIRDAIPFPRTPGSVE 459
NIR FPR P +
Sbjct: 532 NIRKVTLFPRDPIRLN 547
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 517 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
Score = 44.4 bits (106), Expect = 6e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 523 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
Score = 40.2 bits (95), Expect = 0.001
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEGYDQVKSGLITTGASI 86
VG + + GWV R S+ FI++ D + +Q D A+ + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCI 69
Query: 87 WIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLR 138
+ G V + + ++E+ + + ++ ++D P+ V+ E R K +L
Sbjct: 70 QVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVL-PLDSNHVNTEEARLKYRYLD 128
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R + R + +F ++GF+ I +P++T + EGA
Sbjct: 129 LRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 51.4 bits (124), Expect = 2e-07
Identities = 45/260 (17%), Positives = 77/260 (29%), Gaps = 56/260 (21%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-ED 277
V+ +FR E H EF M+E D+ M L ++ +LD E
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL---LQQVLDCPAAES 166
Query: 278 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEH-E 335
+ + ++ ID + T E+ K + D L
Sbjct: 167 LSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFT 217
Query: 336 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGGS--- 388
+ P V +P + +D R+ E G
Sbjct: 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTED-----------HRVAERFEVYYKGIELA 266
Query: 389 -----------QREERLE-----YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
Q++ R E L + ++++ ++ G +G LG
Sbjct: 267 NGFHELTDAREQQQ-RFEQDNRKRAARGLPQHPIDQN----LIEALKVGMPDCSGVALGV 321
Query: 433 ERLVQFATGVENIRDAIPFP 452
+RLV A G E + + I F
Sbjct: 322 DRLVMLALGAETLAEVIAFS 341
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 4e-07
Identities = 75/485 (15%), Positives = 125/485 (25%), Gaps = 189/485 (38%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKP 198
G+ V L+Y + W++ C + E
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLN-----------LKN--CNSPETVLE-- 200
Query: 199 AFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 258
L L Y P + + + ++S +L ++ ++
Sbjct: 201 -------MLQK------LL--YQIDPNWTSRSDHSSN---------IKLRIHSIQAELR- 235
Query: 259 ATAYLQYVVRY-----ILDNC--KEDMDFFN-------TWIEKGIIDRLSTVAERDFVQL 304
L Y +L N + + FN T K + D LS +
Sbjct: 236 ---RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT---HI 289
Query: 305 SYTDAIELLIKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVS------------ 351
S L + K L+K+ C Q L E P +S
Sbjct: 290 SLDHHSMTLTPDEVK-SLLLKYLDCRPQD-----LPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 352 -DY---------------------PKEIKAFYMR----QND-------------DGRTVA 372
D P E + + R D
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 373 AMDMLVPRIGELIGGS----QREERLEYLEGRLDELK--------LNR------------ 408
M ++ +L S Q +E + ELK L+R
Sbjct: 404 VMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 409 ----------DSYW-WYLDLRHYGSVPHAGFGLGFERL---VQFATGVEN-IRDAIPFPR 453
D Y+ ++ H ++ H F + +F +E IR
Sbjct: 460 DSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWN 515
Query: 454 TPGSV 458
GS+
Sbjct: 516 ASGSI 520
Score = 45.6 bits (107), Expect = 3e-05
Identities = 66/478 (13%), Positives = 136/478 (28%), Gaps = 133/478 (27%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDG------SCLSNMQCVMTSDAEGYDQVKSGLI 80
R+ + + + LR +V DG + ++ C + I
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLI----DGVLGSGKTWVALDVC----LSYKVQCKMDFKI 184
Query: 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIV-LVGKSDPSYPIQKKRVSREFLRTKAHLRP 139
W+ + + E + + L+ + DP++ + S LR + ++
Sbjct: 185 -----FWL------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQA 232
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASD--CEGAGEQFCVTTLDFFEK 197
N L + + ++ A + C + +TT
Sbjct: 233 ELRRLLKSKPYENCLLVLLN--------VQ-NAKAWNAFNLSC-----KILLTTRF---- 274
Query: 198 PAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE----PELA----- 248
V+ L+A T + ++ T L ++ P
Sbjct: 275 ---KQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 249 -----FADLKDDMACATAYLQYV----VRYILDNCKEDMD-------F-----F--NTWI 285
A+ D ++V + I+++ ++ F F + I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 286 EKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE-HERYLTEEAFG 344
++ + + + +D + ++ K K + K + YL +
Sbjct: 388 PTILLSLI-------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELK--- 436
Query: 345 GCPV---------IVSDYPKEIKAFYMRQNDDGRTVAAMDM-LVPRIGELIGGSQREERL 394
+ IV Y K F + D +D IG + + ER+
Sbjct: 437 -VKLENEYALHRSIVDHY-NIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 395 E-----YLEGRLDELKLNRDSYWWY---------LDLRHYGS--VPHAGFGLGFERLV 436
+L+ R E K+ DS W L+ Y + +ERLV
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLV 545
Score = 31.4 bits (70), Expect = 0.70
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 38/122 (31%)
Query: 300 DF----VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 355
DF Q Y D + + A F K D+Q + L++E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVD-NFDCK---DVQDMPKSILSKE-------------- 49
Query: 356 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE-YLEGRLDELKLNRDSYWWY 414
EI M ++ T+ L+ S++EE ++ ++E L R +Y +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLL---------SKQEEMVQKFVEEVL------RINYKFL 94
Query: 415 LD 416
+
Sbjct: 95 MS 96
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 50.6 bits (122), Expect = 6e-07
Identities = 68/276 (24%), Positives = 102/276 (36%), Gaps = 74/276 (26%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
VY G FR E +T RH EF M+E A+AD +D M + ++ +L K
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 332
+D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 GEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG----- 358
Query: 333 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 383
++ E F P + +P EI A ++N D PR +
Sbjct: 359 ----HIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA---KKNPDD----------PRFTD 401
Query: 384 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 416
I G QR+ E L+ R +DE D +L+
Sbjct: 402 RFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-----D----FLE 452
Query: 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P G G+G +RLV T +IRD + FP
Sbjct: 453 ALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
Score = 30.9 bits (71), Expect = 1.0
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
F + K ++ E L+ + + VAG + T R F + D + +Q
Sbjct: 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVT--GQIQ 87
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D + Y+ K + G + ++G + ++ ++ +KV+ + K+
Sbjct: 88 IYVRQDDVGEQQYELFK--ISDLGDIVGVRGTMFKTK--VGELSIKVSSYEFLTKA 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 8e-07
Identities = 61/402 (15%), Positives = 106/402 (26%), Gaps = 143/402 (35%)
Query: 128 REFLRTK------AHLRPRTNTFGAVARVRNAL--AYATHKFFQENGFIWISSPIITASD 179
+L A L +T + + + + + +S + A
Sbjct: 93 NCYLEGNDIHALAAKLLQENDT--TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 180 CEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVY-TFGPTFRAENSNTSRHLA 238
A F GQ N + Y L ++Y T+ ++ L+
Sbjct: 151 EGNAQ---------LV--AIF---GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 239 EF-------------------WMIEPELAFADLKDDMACA---------TAYLQYVVRYI 270
E W+ P D + YVV
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDK--DYLLSIPISCPLIGVIQLAHYVV--- 251
Query: 271 LDNCK-------EDMDFFN--TWIEKGIIDRLSTVA------ERDFVQLSYTDAIELLIK 315
K E + T +G++ + VA F AI +L
Sbjct: 252 --TAKLLGFTPGELRSYLKGATGHSQGLV---TAVAIAETDSWESFFVSVR-KAITVL-- 303
Query: 316 AKKKFEFLVKWGCDLQSEHERYLTEEAFGGC---PVIVSDYPKEIKAFYMRQNDDGRTVA 372
F + G EA+ P I+ D +N++G
Sbjct: 304 ------FFI--GVRCY---------EAYPNTSLPPSILEDS---------LENNEG---V 334
Query: 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR---DSYWWYLDL----RHY---GS 422
ML I +E+ ++ ++ K N + L ++ G
Sbjct: 335 PSPMLS------ISNLTQEQ----VQDYVN--KTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 423 VPHA--GFGLGFERLVQFATGVENIRDAIPFP-RTP-GSVEF 460
P + G L + + +G++ R IPF R S F
Sbjct: 383 -PQSLYGLNLTLRK-AKAPSGLDQSR--IPFSERKLKFSNRF 420
Score = 48.5 bits (115), Expect = 4e-06
Identities = 49/308 (15%), Positives = 86/308 (27%), Gaps = 122/308 (39%)
Query: 156 YATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDF------FEKPAFLTV-----S 204
Y T K Q+ +W A F T F P LT+
Sbjct: 1636 YKTSKAAQD---VW-----------NRADNHF-KDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 205 GQLNAETYATALSNVYTFG-----PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 259
G+ E Y+ + G F+ N +++ F K ++ A
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST-----------SYTFRSEKGLLS-A 1728
Query: 260 TAYLQ---YVVRYILDNCKEDMDFFNTWIEKGIIDR--------------LSTVAERDFV 302
T + Q ++ F KG+I L+++A+ V
Sbjct: 1729 TQFTQPALTLMEKAA---------FEDLKSKGLIPADATFAGHSLGEYAALASLAD---V 1776
Query: 303 QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER-YLTEEAFGGCPVIVSDYPKEIKAFY 361
+S +E++ R + A + S+Y
Sbjct: 1777 -MSIESLVEVV--------------------FYRGMTMQVAVPRDELGRSNYG------- 1808
Query: 362 MRQNDDGRTVAAMDM-----LVPRIGELIG-----------GSQ-----REERLEYLEGR 400
M + GR A+ +V R+G+ G Q L+ +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV 1868
Query: 401 LDELKLNR 408
L+ +KL +
Sbjct: 1869 LNFIKLQK 1876
Score = 33.9 bits (77), Expect = 0.13
Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 65/214 (30%)
Query: 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSG----LITTGAS 85
M+ ++ + + Q V + N S L + V S G V SG L G +
Sbjct: 338 MLSISN-LTQEQVQDYVN--KTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLY--GLN 390
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKA--H---LRPR 140
+ ++ PS G Q ++I P + +K + S FL + H L P
Sbjct: 391 LTLRKAKAPS-GLDQ------SRI-------P-FSERKLKFSNRFLPVASPFHSHLLVP- 434
Query: 141 TNTFGAVARVRNALAYATHKFFQENGFIWISS----PI---ITASD-CEGAGEQFCVTTL 192
A + L +N + + P+ SD +G +
Sbjct: 435 -----ASDLINKDLV--------KNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--ISERI 479
Query: 193 --DFFEKPAFLTVSGQLNAETYATALSNVYTFGP 224
P + Q A +++ FGP
Sbjct: 480 VDCIIRLPVKWETTTQFKA-------THILDFGP 506
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 49.1 bits (118), Expect = 2e-06
Identities = 54/276 (19%), Positives = 81/276 (29%), Gaps = 69/276 (25%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
V+ FR E + RH EF M+E A+ D + M ++ L
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGCDLQS 332
++D + I + A +D L + K+ + +
Sbjct: 334 QGRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFLNAGI 392
Query: 333 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 383
L F P + DYP E+ A R++D I E
Sbjct: 393 GA---LQLALFEETAEAQLWEPTFIIDYPIEVSPLA---RESDTV----------AGITE 436
Query: 384 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 416
I G Q + +E + D D Y+
Sbjct: 437 RFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA-----D----YIR 487
Query: 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P G G+G +RLV T IRD + FP
Sbjct: 488 ALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
Score = 30.2 bits (69), Expect = 1.5
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+F+ D++ E L+ L + +AG + R +F V DGS +Q
Sbjct: 60 DFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGS--GQIQ 117
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+T E YD K G + +G + + K ++ +K ++ L+ K+
Sbjct: 118 FFVTPADVGAETYDAFKK--WDLGDIVAARGVLFRTN--KGELSVKCTQLRLLAKA 169
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 47.9 bits (115), Expect = 4e-06
Identities = 60/271 (22%), Positives = 93/271 (34%), Gaps = 63/271 (23%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
V+ FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 276 --EDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 332
DF + + + + + E D L DA + L + WG
Sbjct: 313 GEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL---- 367
Query: 333 EHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL- 384
+ E F P +++YP E+ R + + + R E
Sbjct: 368 ---GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPE-------ITDRF-EFF 416
Query: 385 IGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYG 421
IGG Q E E + + DE D Y+ YG
Sbjct: 417 IGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE-----D----YVTALEYG 467
Query: 422 SVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
P AG G+G +R++ T IRD I FP
Sbjct: 468 LPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
Score = 27.9 bits (63), Expect = 9.0
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 7 EFRKKLKIVDVK----GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+FR+ + N+ L+ + + + VAG + T R +F+ + D +Q
Sbjct: 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVG--GRIQ 95
Query: 63 CVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115
+ D+ Y+ G I +G + +Q ++ + ++ L+ K+
Sbjct: 96 LYVARDSLPEGVYNDQFKKW-DLGDIIGARGTLFKTQ--TGELSIHCTELRLLTKA 148
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P AG+G+G +R+ F T NI++ + FP
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
Score = 36.0 bits (84), Expect = 0.026
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 24/159 (15%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM---------ACATAYLQYVVRY 269
VY G FR E + H EF E +A+AD D M Y V Y
Sbjct: 247 VYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTY 305
Query: 270 ILDNCKED---MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 326
D + +DF + +++ L + + + E + V
Sbjct: 306 HPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILD---DICVAK 362
Query: 327 GCDLQSEHER-YLTEEAFGGC-------PVIVSDYPKEI 357
+ L ++ G P + D+P+ +
Sbjct: 363 AVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM 401
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 36.0 bits (83), Expect = 0.021
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYLQYV---VRYILDN 273
++ GP +R E+ HL EF M+ + ++ + T +L ++ + + D+
Sbjct: 158 IFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIVGDS 216
Query: 274 C---KEDMDFFNTWIEKG 288
C + +D + +E
Sbjct: 217 CMVFGDTLDVMHGDLELS 234
Score = 30.6 bits (69), Expect = 0.96
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 417 LRHYG-SVPHAGFGLGFERLVQFATGVENIRDA 448
R +G P G G G ERL++ +NI+ A
Sbjct: 244 DREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA 276
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 35.3 bits (81), Expect = 0.046
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 417 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 447
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 30.7 bits (69), Expect = 1.0
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 219 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 253
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 35.0 bits (80), Expect = 0.054
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 417 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 447
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 30.3 bits (68), Expect = 1.5
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 219 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 253
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 34.6 bits (79), Expect = 0.076
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 417 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 447
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 29.9 bits (67), Expect = 2.0
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 219 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 253
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 33.8 bits (77), Expect = 0.12
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 417 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 447
L YG VP GLG ERL + ++R+
Sbjct: 325 LSKYGIDVPVMNLGLGVERLAMISGNFADVRE 356
Score = 29.6 bits (66), Expect = 2.5
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 7/42 (16%)
Query: 219 VYTFGP--TFRAENSNTSRHLAEF-----WMIEPELAFADLK 253
F FR E HL + + + D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.50
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 25/55 (45%)
Query: 389 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443
+++ L+ L+ LKL Y D S P L + AT +E
Sbjct: 18 EKQA-LKKLQAS---LKL-------YAD----DSAP----ALAIK-----AT-ME 47
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 31.4 bits (71), Expect = 0.66
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 427 GFGLGFERLVQFATGVENIRD 447
+GL ER G+ NIR+
Sbjct: 456 AWGLSLERPTMIKYGINNIRE 476
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 28.0 bits (63), Expect = 0.87
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 314 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 358
+ E+ +KW G D + E+ G ++ + K K
Sbjct: 18 VNKNGINEYYIKWAGYD--WYDNTWEPEQNLFGAEKVLKKWKKRKK 61
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3
tail, choromatin organization modifier, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Length = 78
Score = 27.8 bits (62), Expect = 1.6
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 314 IKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 359
K K E+LV+W G D SE + + E+ C + D+ +
Sbjct: 24 KNKKGKTEYLVRWKGYD--SEDDTWEPEQHLVNCEEYIHDFNRRHTE 68
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 27.3 bits (61), Expect = 1.7
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 317 KKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 358
K + V+W G S+ + + E C ++ ++ K+I
Sbjct: 17 GGKVLYKVRWKGYT--SDDDTWEPEIHLEDCKEVLLEFRKKIA 57
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 29.9 bits (67), Expect = 1.8
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 264 QYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 323
D KE + +++ I +G+I ++ I K +
Sbjct: 254 VVKSFLTSDEYKEVIKYYHKLISEGLIP-------AEWATKDDDAYNADQISDGKTAKTG 306
Query: 324 VKWG 327
V +G
Sbjct: 307 VVFG 310
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP:
b.34.13.2
Length = 70
Score = 27.0 bits (60), Expect = 2.7
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 315 KAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 358
+ + ++W S + + E GC +++++ + +
Sbjct: 21 RNGAVKLYRIRWLNYS--SRSDTWEPPENLSGCSAVLAEWKRRKR 63
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 29.5 bits (67), Expect = 2.7
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 23/84 (27%)
Query: 278 MDFFNTWIEKGIID--RLSTVAERDFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQS 332
+ W+++G+ D RL D + K F + K+ +++
Sbjct: 183 AKY---WLKQGV-DGFRL--------------DGAMHIFPPAQYDKNFTWWEKFRQEIEE 224
Query: 333 EHERYLTEEAFGGCPVIVSDYPKE 356
YL E + + +
Sbjct: 225 VKPVYLVGEVWDISETVAPYFKYG 248
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 29.2 bits (65), Expect = 3.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 417 LRHYG-SVPHAGFGLGFERLVQFATGVENIRD 447
L Y VP GLG ERL G E++R
Sbjct: 318 LAKYNIDVPVMNLGLGVERLAMIIYGYEDVRA 349
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 28.7 bits (64), Expect = 4.3
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 264 QYVVRYILDNCKEDMDFFNTWIEKGIID 291
+ + K+ + W ++G+ID
Sbjct: 217 KIKHPFAEVAFKDGIKHVAQWYKEGLID 244
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 28.7 bits (65), Expect = 4.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 423 VPHAGFGLGFE---RLVQFATGVENIRDAI 449
V +GFG R V F +E + +A+
Sbjct: 365 VHGSGFGEYGAGHFRAV-FLPPIEILEEAM 393
>1d02_A Type II restriction enzyme MUNI; alpha/beta protein, protein-DNA
complex, distorted double HE hydrolase-DNA complex; HET:
DNA; 1.70A {Mycoplasma} SCOP: c.52.1.8
Length = 202
Score = 28.3 bits (62), Expect = 4.8
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 340 EEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE- 398
F G ++ + PK +K Y + + + + + G +E E
Sbjct: 32 NAVFEGTKYVLYEKPKHLKNLYAQVVLPDDVIKEIFNPLIDLSTTQWGVSPAFAIENTET 91
Query: 399 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440
++ ++ R W G P AG G ER + T
Sbjct: 92 HKILFGEIKRQDGWV------EGKDPSAGRGNAHERSCKLFT 127
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 28.3 bits (63), Expect = 6.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 417 LRHYGSVPHAG--FGLGFERLVQFATGVENIRD 447
L Y +P+ GLG ERL G +++R
Sbjct: 314 LAEYD-IPYPVMNLGLGVERLAMILYGYDDVRK 345
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 27.8 bits (63), Expect = 9.0
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 329 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA-------AMDMLVPRI 381
+E R + G P SD+ + K F + + +A A++ P +
Sbjct: 320 QEAAEFTRRMK----GEMP---SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLL 372
Query: 382 GELIGGS 388
E +GGS
Sbjct: 373 PEFLGGS 379
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 27.9 bits (62), Expect = 9.4
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 29/93 (31%)
Query: 265 YVVRYILDNCKEDMDFFNTWIEKGIID--RLSTVAERDFVQLSYTDAIELLIKAKKKFEF 322
V Y+ D K W++ GI D R++ V F +
Sbjct: 206 TVDVYLKDAIK-------MWLDLGI-DGIRMNAVKHMPF-------------------GW 238
Query: 323 LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 355
+ + + + + F G + + K
Sbjct: 239 QKSFMAAVNNYKPVFTFGQWFLGVNEVSPENHK 271
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 27.9 bits (63), Expect = 9.8
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 329 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA-------AMDMLVPRI 381
+E ER + G P +D+ + A N+ G TVA ++ L +
Sbjct: 360 AEAAEFERRMA----GTLP---ADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVL 412
Query: 382 GELIGGS 388
EL+GGS
Sbjct: 413 PELLGGS 419
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 27.7 bits (61), Expect = 9.9
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIE------PELAFADLKDDMACATAYLQ 264
FR E S L F M E P+ + M A A +
Sbjct: 171 FDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIAR 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,241,132
Number of extensions: 446813
Number of successful extensions: 1066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 73
Length of query: 460
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 363
Effective length of database: 3,993,456
Effective search space: 1449624528
Effective search space used: 1449624528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)