BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012613
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 230/475 (48%), Gaps = 40/475 (8%)
Query: 17 VILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLN---------PLNACNYPHFEFHX 67
V++ P P QGHINP+ ++A +L+ +GF IT ++T N P + F F
Sbjct: 11 VVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFES 70
Query: 68 X---XXXXXXXXXXXXDMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW 124
D+ + ++ + P+ + L +L +NV C+++D
Sbjct: 71 IPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVP--PVTCLVSDCCM 128
Query: 125 YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQ------LEARVIEC 178
F A +F+LP ++ +SS + L + E+ +P +D LE +V
Sbjct: 129 SFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWI 188
Query: 179 PPL---RVKDIPIF-ETGDPKNVD-KVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQ 233
P L R+KDI F T +P ++ + + + + I+ N++ ELE I+
Sbjct: 189 PGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES---DVINAL 245
Query: 234 YFSIP-VFPIGPFHKYFP---------AXXXXXXXQDESCISWLDKHAPKSVIYVSFGSV 283
+IP ++PIGP + +D C+ WL+ P SV+YV+FGS
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGST 305
Query: 284 VNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQ 343
+ + LE AWGLAN + FLW++RP LV + + F + RG I W PQ
Sbjct: 306 TVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGS--VIFSSEFTNEIADRGLIASWCPQ 363
Query: 344 QEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGN 403
+VL HP++GGFLTH GWNST ESIC GVPM+C P+ DQ + R+I + W +G+ +D N
Sbjct: 364 DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN 423
Query: 404 XXXXXXXXXXXXXXXXTEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458
+G++M+++ + K+KA +PGG SY +L ++I +L
Sbjct: 424 VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 18/263 (6%)
Query: 199 KVISAMVSLIKASSGIIWNSYRELEQV---ELTTIHHQYFSIPVFPIGPFHKYFPAXXXX 255
+++ M ++ ++ + NS+ EL+ +L + Y +I GPF+ P
Sbjct: 202 RMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNI-----GPFNLITPPPVVP 256
Query: 256 XXXQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVR 315
C+ WL + P SV+Y+SFG+V E + ++ L SRVPF+W +R
Sbjct: 257 ---NTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARV 313
Query: 316 EAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMI 375
LP GF+E G G +V WAPQ EVLAH AVG F+TH GWNS ES+ GVP+I
Sbjct: 314 H------LPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 367
Query: 376 CQPYLGDQMVNARYISHVWRLGLHLDGNXXXXXXXXXXXXXXXXTE-GQEMRERILYSKE 434
C+P+ GDQ +N R + V +G+ ++G E G+++RE + +E
Sbjct: 368 CRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRE 427
Query: 435 KAHLCLKPGGSSYQSLERLIDHI 457
A + P GSS ++ L+D +
Sbjct: 428 TADRAVGPKGSSTENFITLVDLV 450
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 163/352 (46%), Gaps = 20/352 (5%)
Query: 114 SFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKC-YLPIQDSQLE 172
+ C++TD ++F +A + + L T+ + L ++REK + D +
Sbjct: 117 NITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSI 176
Query: 173 ARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIK----ASSGIIWNSYRELEQVELT 228
+ P L+ D+P G K++D + M+ + ++ + NS+ + +
Sbjct: 177 DVLPGFPELKASDLP---EGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIEN 233
Query: 229 TIHHQYFSIPVFPIGPFHKYFPAXXXXXXXQDESCISWLDKHAPKSVIYVSFGSVVNIDE 288
++ ++ + +GPF+ P + C+ WLD+H SV+Y+SFGSVV
Sbjct: 234 ELNSKFKLL--LNVGPFNLTTP---QRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPP 288
Query: 289 TEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLA 348
E +A L PF+W R + E LP GF+E +G IV WAPQ E+L
Sbjct: 289 HELTALAESLEECGFPFIWSFR------GDPKEKLPKGFLERTKTKGKIVAWAPQVEILK 342
Query: 349 HPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNXXXXX 408
H +VG FLTH GWNS LE I GVPMI +P+ GDQ +N V +G+ +D
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKE 402
Query: 409 XXXXXXXXXXXTE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459
+E G MR++I+ KE A ++ G+S LI + S
Sbjct: 403 SIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 156/351 (44%), Gaps = 18/351 (5%)
Query: 116 ACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLEARV 175
++ D VA +F +P I ++ + F P L E ++ +
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLML 171
Query: 176 IECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYF 235
C P+ KD + K + K + GI+ N++ ELE + +
Sbjct: 172 PGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGL 231
Query: 236 SIP-VFPIGPFHKYFPAXXXXXXXQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEI 294
P V+P+GP ++ C+ WLD SV+YVSFGS + + E+
Sbjct: 232 DKPPVYPVGPLVNI--GKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNEL 289
Query: 295 AWGLANSRVPFLWVVR-PGLVREAEW---------LELLPTGFVEMLDGRGHIVK-WAPQ 343
A GLA+S FLWV+R P + + + L LP GF+E RG ++ WAPQ
Sbjct: 290 ALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQ 349
Query: 344 QEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHL--- 400
+VLAHP+ GGFLTH GWNSTLES+ G+P+I P +Q +NA +S R L
Sbjct: 350 AQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG 409
Query: 401 -DGNXXXXXXXXXXXXXXXXTEGQEMRERILYSKEKAHLCLKPGGSSYQSL 450
DG EG+ +R ++ KE A LK G+S ++L
Sbjct: 410 DDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 174/375 (46%), Gaps = 40/375 (10%)
Query: 105 TSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYL 164
+I + + ++ D + V N+F +P+ + TS+V +L+ L
Sbjct: 105 ATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNV-GFLSL----------ML 153
Query: 165 PIQDSQLEARVIECP-PLRVKDIPIFETGDPKNV--DKVISA---------MVSLIKASS 212
+++ Q+E + ++ +IP P NV D + + + +
Sbjct: 154 SLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTK 213
Query: 213 GIIWNSYRELEQVELTTIHHQYFSIP-VFPIGPFHKYFPAXX-XXXXXQDESCISWLDKH 270
GII N++ +LEQ + ++ IP ++ +GP Q + + WLD+
Sbjct: 214 GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQ 273
Query: 271 APKSVIYVSFGSV-VNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVE 329
KSV+++ FGS+ V+ ++ EIA GL +S V FLW + ++ P GF+E
Sbjct: 274 PDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLE 326
Query: 330 --MLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNA 387
L+G+G I WAPQ EVLAH A+GGF++H GWNS LES+ GVP++ P +Q +NA
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 388 RYISHVWRLGLHL-----DGNXXXXXXXXXXXXXXXXTEGQEMRERILYSKEKAHLCLKP 442
+ W +GL L G+ + + +++ KE + +
Sbjct: 387 FRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD 446
Query: 443 GGSSYQSLERLIDHI 457
GGSS S+ +LID I
Sbjct: 447 GGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 174/375 (46%), Gaps = 40/375 (10%)
Query: 105 TSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYL 164
+I + + ++ D + V N+F +P+ + TS+V +L+ L
Sbjct: 105 ATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNV-GFLSL----------ML 153
Query: 165 PIQDSQLEARVIECP-PLRVKDIPIFETGDPKNV--DKVISA---------MVSLIKASS 212
+++ Q+E + ++ +IP P NV D + + + +
Sbjct: 154 SLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTK 213
Query: 213 GIIWNSYRELEQVELTTIHHQYFSIP-VFPIGPFHKYFPAXX-XXXXXQDESCISWLDKH 270
GII N++ +LEQ + ++ IP ++ +GP Q + + WLD+
Sbjct: 214 GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQ 273
Query: 271 APKSVIYVSFGSV-VNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVE 329
KSV+++ FGS+ V+ ++ EIA GL +S V FLW + ++ P GF+E
Sbjct: 274 PDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLE 326
Query: 330 --MLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNA 387
L+G+G I WAPQ EVLAH A+GGF++H GWNS LES+ GVP++ P +Q +NA
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 388 RYISHVWRLGLHL-----DGNXXXXXXXXXXXXXXXXTEGQEMRERILYSKEKAHLCLKP 442
+ W +GL L G+ + + +++ KE + +
Sbjct: 387 FRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD 446
Query: 443 GGSSYQSLERLIDHI 457
GGSS S+ +LID I
Sbjct: 447 GGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 336 HIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVN 386
+ KW PQ ++L HP F+THGG N E+I G+P + P DQ N
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 339 KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGL 398
+W PQ ++L + F+TH G ST+E++ VPM+ P + +Q +NA I + LG
Sbjct: 311 QWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELG-LGR 367
Query: 399 HL 400
H+
Sbjct: 368 HI 369
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 339 KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQM 384
W PQ +L H V + HGG +TL ++ GVP + P+ GD
Sbjct: 298 SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 339 KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGL 398
+W P VLAH LTHG + LE+ GVP++ P+ + A V LGL
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEA--APSAERVIELGL 342
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 340 WAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNA 387
W PQ +L + F+TH G + E + PMI P DQ NA
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 19/179 (10%)
Query: 221 ELEQVELTTIHHQYFSIPVFPIGPFHKYFPAXXXXX----XXQDESCISWLDKHAPKSVI 276
EL ++ LT SI V P + P +++ SW+ + + +
Sbjct: 171 ELAELGLTDFPDPLLSIDVCPPSXEAQPKPGTTKXRYVPYNGRNDQVPSWVFEERKQPRL 230
Query: 277 YVSFGSVVNIDETEFLEIAWGLANS---RVPFLW--VVRPGLVREAEWLELLPTGFVEML 331
++FG+ V + T + L + +P L VV + A+ L+ LP G +
Sbjct: 231 CLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGV--LA 288
Query: 332 DGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYI 390
G+ + P +V+ H HGG +TL + EGVP + P + + +AR +
Sbjct: 289 AGQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLL 339
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 19/179 (10%)
Query: 221 ELEQVELTTIHHQYFSIPVFPIGPFHKYFPAXXXXX----XXQDESCISWLDKHAPKSVI 276
EL ++ LT SI V P + P +++ SW+ + + +
Sbjct: 170 ELAELGLTDFPDPLLSIDVCPPSXEAQPKPGTTKXRYVPYNGRNDQVPSWVFEERKQPRL 229
Query: 277 YVSFGSVVNIDETEFLEIAWGLANS---RVPFLW--VVRPGLVREAEWLELLPTGFVEML 331
++FG+ V + T + L + +P L VV + A+ L+ LP G +
Sbjct: 230 CLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGV--LA 287
Query: 332 DGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYI 390
G+ + P +V+ H HGG +TL + EGVP + P + + +AR +
Sbjct: 288 AGQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLL 338
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 339 KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHV 393
+W P +VL V +THGG + E++ G P++ P D AR + +
Sbjct: 303 RWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 339 KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHV 393
+W P +VL V +THGG + E++ G P++ P D AR + +
Sbjct: 303 RWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,243,500
Number of Sequences: 62578
Number of extensions: 503247
Number of successful extensions: 932
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 19
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)