Query 012613
Match_columns 460
No_of_seqs 131 out of 1298
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.4E-68 7.3E-73 518.1 46.7 442 13-460 6-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 9.3E-65 2E-69 495.5 44.1 435 14-459 7-469 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 3.4E-64 7.3E-69 491.6 44.1 426 14-458 6-448 (448)
4 PLN02992 coniferyl-alcohol glu 100.0 4.3E-64 9.4E-69 489.4 43.1 431 13-460 4-470 (481)
5 PLN02173 UDP-glucosyl transfer 100.0 9.1E-64 2E-68 484.5 44.0 420 14-458 5-447 (449)
6 PLN02448 UDP-glycosyltransfera 100.0 5.6E-64 1.2E-68 494.0 42.9 430 11-459 7-457 (459)
7 PLN02670 transferase, transfer 100.0 8.9E-64 1.9E-68 486.8 41.1 432 12-459 4-465 (472)
8 PLN02207 UDP-glycosyltransfera 100.0 3.7E-63 8.1E-68 482.0 44.7 440 12-459 1-465 (468)
9 PLN02210 UDP-glucosyl transfer 100.0 6.2E-63 1.4E-67 483.1 43.5 424 13-458 7-454 (456)
10 PLN00164 glucosyltransferase; 100.0 1.6E-62 3.4E-67 483.3 45.2 436 12-459 1-473 (480)
11 PLN02863 UDP-glucoronosyl/UDP- 100.0 1E-62 2.2E-67 482.9 42.5 435 13-459 8-471 (477)
12 PLN02152 indole-3-acetate beta 100.0 2.2E-62 4.8E-67 475.7 43.8 426 13-457 2-454 (455)
13 PLN03015 UDP-glucosyl transfer 100.0 3E-62 6.5E-67 473.6 43.7 433 12-457 1-466 (470)
14 PLN03004 UDP-glycosyltransfera 100.0 1.3E-62 2.9E-67 476.7 41.1 427 12-448 1-450 (451)
15 PLN02534 UDP-glycosyltransfera 100.0 3E-62 6.5E-67 478.4 42.3 438 14-459 8-486 (491)
16 PLN02554 UDP-glycosyltransfera 100.0 4.8E-62 1E-66 481.9 43.7 430 14-459 2-478 (481)
17 PLN03007 UDP-glucosyltransfera 100.0 1.1E-61 2.3E-66 480.1 43.5 436 13-460 4-481 (482)
18 PLN02764 glycosyltransferase f 100.0 1.3E-61 2.8E-66 467.9 41.4 417 14-459 5-445 (453)
19 PLN02208 glycosyltransferase f 100.0 2.9E-61 6.3E-66 468.2 41.8 418 13-460 3-440 (442)
20 PLN00414 glycosyltransferase f 100.0 9.8E-61 2.1E-65 465.1 41.0 417 13-459 3-440 (446)
21 PLN02167 UDP-glycosyltransfera 100.0 2.7E-60 5.8E-65 468.7 43.3 440 12-459 1-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.6E-53 1.2E-57 418.4 26.7 407 14-456 20-464 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.4E-55 1.2E-59 440.8 -7.5 386 15-438 1-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 9.6E-45 2.1E-49 354.9 29.3 374 20-458 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7.3E-45 1.6E-49 357.5 24.9 376 15-454 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 1.9E-43 4.1E-48 341.3 19.2 390 14-458 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 5.1E-42 1.1E-46 346.5 18.9 393 14-438 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 1.4E-25 3E-30 214.3 28.7 336 15-459 2-351 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 3E-25 6.6E-30 211.3 23.2 305 15-416 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 1.8E-22 3.9E-27 191.7 23.4 305 16-419 1-314 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 1.6E-21 3.6E-26 183.9 29.4 309 15-419 1-324 (357)
32 PRK00726 murG undecaprenyldiph 99.9 9.9E-20 2.1E-24 176.2 28.3 344 15-459 2-357 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 5.2E-18 1.1E-22 163.8 26.8 314 16-419 1-324 (350)
34 TIGR01133 murG undecaprenyldip 99.8 2.8E-16 6.1E-21 151.6 27.5 307 15-419 1-321 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 1.2E-16 2.6E-21 155.1 21.5 349 15-455 6-384 (385)
36 COG4671 Predicted glycosyl tra 99.7 5.5E-16 1.2E-20 139.4 23.1 334 14-418 9-364 (400)
37 PRK13609 diacylglycerol glucos 99.7 4.8E-15 1E-19 144.7 21.9 167 272-458 201-370 (380)
38 PRK00025 lpxB lipid-A-disaccha 99.7 7.3E-15 1.6E-19 143.5 21.9 345 15-457 2-375 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 2E-14 4.3E-19 133.1 18.1 104 273-389 170-278 (279)
40 PRK13608 diacylglycerol glucos 99.6 7.9E-13 1.7E-17 129.2 25.2 165 271-458 200-370 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 5.3E-16 1.2E-20 132.8 -0.9 135 275-419 1-144 (167)
42 TIGR03492 conserved hypothetic 99.5 9.4E-12 2E-16 121.0 27.7 362 22-456 4-395 (396)
43 cd03814 GT1_like_2 This family 99.5 2.3E-10 5.1E-15 110.5 33.2 111 332-457 246-363 (364)
44 PLN02871 UDP-sulfoquinovose:DA 99.5 2.7E-10 5.8E-15 114.2 33.3 154 274-455 263-429 (465)
45 PLN02605 monogalactosyldiacylg 99.5 2.6E-11 5.6E-16 118.3 24.7 164 271-457 204-379 (382)
46 PRK10307 putative glycosyl tra 99.4 1.9E-09 4.1E-14 106.5 32.7 166 273-459 228-407 (412)
47 COG3980 spsG Spore coat polysa 99.4 6.3E-11 1.4E-15 103.9 17.4 143 272-431 157-302 (318)
48 cd04962 GT1_like_5 This family 99.3 2.4E-09 5.1E-14 104.2 30.3 113 333-460 253-371 (371)
49 PF03033 Glyco_transf_28: Glyc 99.3 3.4E-13 7.3E-18 111.8 1.8 128 17-147 1-133 (139)
50 cd03823 GT1_ExpE7_like This fa 99.3 2.5E-09 5.5E-14 103.0 28.9 130 272-419 189-329 (359)
51 cd03818 GT1_ExpC_like This fam 99.3 5.8E-09 1.3E-13 102.5 31.4 79 333-419 281-366 (396)
52 cd03817 GT1_UGDG_like This fam 99.3 6.5E-09 1.4E-13 100.6 31.3 94 333-435 259-360 (374)
53 cd03794 GT1_wbuB_like This fam 99.3 2.1E-09 4.7E-14 104.5 28.0 332 16-420 1-366 (394)
54 cd03816 GT1_ALG1_like This fam 99.3 1.1E-08 2.5E-13 100.8 30.2 345 13-433 2-399 (415)
55 cd03801 GT1_YqgM_like This fam 99.3 2.5E-08 5.4E-13 96.0 31.3 342 25-458 14-374 (374)
56 cd03800 GT1_Sucrose_synthase T 99.3 6.3E-09 1.4E-13 102.2 27.3 326 25-419 21-368 (398)
57 TIGR03449 mycothiol_MshA UDP-N 99.2 8.2E-08 1.8E-12 94.7 31.8 111 333-459 283-401 (405)
58 cd03808 GT1_cap1E_like This fa 99.2 9.6E-08 2.1E-12 91.7 31.7 314 16-420 1-330 (359)
59 cd03798 GT1_wlbH_like This fam 99.2 9.9E-08 2.1E-12 92.1 31.4 112 333-460 259-377 (377)
60 cd03825 GT1_wcfI_like This fam 99.2 8.4E-08 1.8E-12 92.9 30.4 115 332-460 243-365 (365)
61 TIGR02472 sucr_P_syn_N sucrose 99.1 7.1E-08 1.5E-12 96.0 28.7 112 332-457 316-438 (439)
62 PRK05749 3-deoxy-D-manno-octul 99.1 1.8E-08 4E-13 99.9 24.5 112 335-458 304-422 (425)
63 cd03795 GT1_like_4 This family 99.1 8E-08 1.7E-12 92.8 28.0 146 273-433 190-347 (357)
64 PF04007 DUF354: Protein of un 99.1 1.9E-08 4.1E-13 94.4 22.4 301 15-417 1-308 (335)
65 cd03820 GT1_amsD_like This fam 99.1 1.3E-07 2.7E-12 90.4 28.5 94 334-435 236-336 (348)
66 cd03796 GT1_PIG-A_like This fa 99.1 1.2E-07 2.6E-12 93.3 28.8 110 333-459 250-367 (398)
67 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 5.2E-09 1.1E-13 101.6 18.1 159 272-457 197-362 (363)
68 cd03821 GT1_Bme6_like This fam 99.1 3.2E-07 6.9E-12 88.7 29.1 105 333-454 262-374 (375)
69 TIGR02468 sucrsPsyn_pln sucros 99.0 3.4E-07 7.4E-12 96.7 29.7 394 13-459 168-670 (1050)
70 cd03822 GT1_ecORF704_like This 99.0 4.2E-07 9.2E-12 87.8 28.4 108 333-457 247-365 (366)
71 cd05844 GT1_like_7 Glycosyltra 99.0 5.2E-07 1.1E-11 87.6 29.0 80 332-419 244-336 (367)
72 cd03802 GT1_AviGT4_like This f 99.0 3E-07 6.6E-12 88.0 24.8 152 276-457 173-334 (335)
73 cd04955 GT1_like_6 This family 99.0 8E-07 1.7E-11 86.0 28.0 156 277-458 196-363 (363)
74 cd03805 GT1_ALG2_like This fam 98.9 1.5E-06 3.2E-11 85.3 29.0 91 332-431 279-377 (392)
75 TIGR00236 wecB UDP-N-acetylglu 98.9 4.5E-08 9.8E-13 95.1 16.9 134 273-428 197-340 (365)
76 cd03819 GT1_WavL_like This fam 98.9 1.1E-06 2.4E-11 84.8 26.5 94 333-434 246-347 (355)
77 TIGR02149 glgA_Coryne glycogen 98.9 1.4E-06 3E-11 85.4 27.2 165 273-459 200-386 (388)
78 cd04951 GT1_WbdM_like This fam 98.9 1.4E-06 3E-11 84.2 26.9 163 272-458 186-359 (360)
79 PRK14089 ipid-A-disaccharide s 98.9 3.5E-07 7.7E-12 86.6 21.1 158 273-455 167-346 (347)
80 cd03799 GT1_amsK_like This is 98.9 2.5E-06 5.4E-11 82.3 27.2 80 333-420 236-328 (355)
81 cd03811 GT1_WabH_like This fam 98.9 1.1E-06 2.3E-11 84.0 24.3 131 272-419 187-332 (353)
82 PLN02275 transferase, transfer 98.9 4.8E-06 1E-10 81.0 28.4 323 13-417 3-371 (371)
83 cd03807 GT1_WbnK_like This fam 98.8 7.5E-06 1.6E-10 78.7 29.2 109 333-457 251-364 (365)
84 TIGR03087 stp1 sugar transfera 98.8 1.1E-06 2.4E-11 86.4 22.5 110 333-459 280-396 (397)
85 TIGR02470 sucr_synth sucrose s 98.8 2.9E-05 6.4E-10 80.5 32.9 110 333-457 619-745 (784)
86 TIGR03088 stp2 sugar transfera 98.8 5.3E-06 1.1E-10 80.9 26.2 112 334-459 256-372 (374)
87 PRK15427 colanic acid biosynth 98.8 1.2E-05 2.6E-10 79.1 28.7 114 333-460 279-406 (406)
88 cd03809 GT1_mtfB_like This fam 98.8 2.2E-06 4.9E-11 82.7 22.5 106 332-454 252-364 (365)
89 PRK09922 UDP-D-galactose:(gluc 98.8 2.9E-06 6.3E-11 82.2 23.1 148 274-435 180-343 (359)
90 PLN02846 digalactosyldiacylgly 98.7 9.4E-06 2E-10 79.7 25.1 99 337-458 288-390 (462)
91 PLN00142 sucrose synthase 98.7 1.3E-05 2.7E-10 83.3 26.2 102 341-457 654-768 (815)
92 TIGR02095 glgA glycogen/starch 98.7 1.6E-05 3.5E-10 80.0 26.7 164 273-460 290-473 (473)
93 PRK00654 glgA glycogen synthas 98.7 1.4E-05 2.9E-10 80.3 25.3 170 273-459 281-462 (466)
94 cd03806 GT1_ALG11_like This fa 98.6 1.1E-05 2.4E-10 79.7 23.3 79 332-419 304-392 (419)
95 COG0763 LpxB Lipid A disacchar 98.6 1.7E-05 3.7E-10 74.1 21.1 348 15-458 2-380 (381)
96 cd03792 GT1_Trehalose_phosphor 98.6 6.7E-05 1.4E-09 73.1 26.6 111 333-460 252-372 (372)
97 cd03804 GT1_wbaZ_like This fam 98.5 1E-05 2.2E-10 78.1 19.9 124 277-420 198-327 (351)
98 cd03812 GT1_CapH_like This fam 98.5 4.1E-05 8.8E-10 73.9 23.6 78 333-419 249-331 (358)
99 KOG3349 Predicted glycosyltran 98.5 5.9E-07 1.3E-11 71.3 8.5 120 273-402 3-134 (170)
100 PRK15179 Vi polysaccharide bio 98.5 0.00029 6.3E-09 73.1 30.5 112 333-458 574-692 (694)
101 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 3.6E-06 7.9E-11 81.3 15.8 157 272-456 200-364 (365)
102 PF02684 LpxB: Lipid-A-disacch 98.5 3.4E-05 7.4E-10 73.7 21.4 340 17-449 1-367 (373)
103 PLN02316 synthase/transferase 98.5 0.00032 7E-09 74.9 30.3 118 333-459 900-1033(1036)
104 cd03791 GT1_Glycogen_synthase_ 98.5 0.00011 2.4E-09 74.1 25.5 170 273-459 295-476 (476)
105 cd04950 GT1_like_1 Glycosyltra 98.4 0.00041 8.9E-09 67.6 27.6 106 333-459 254-371 (373)
106 PRK01021 lpxB lipid-A-disaccha 98.4 0.00022 4.9E-09 71.4 25.6 331 15-437 227-590 (608)
107 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.00033 7.3E-09 66.4 25.0 330 16-437 50-405 (419)
108 PLN02949 transferase, transfer 98.4 0.00061 1.3E-08 67.9 27.6 112 332-459 334-456 (463)
109 PRK10125 putative glycosyl tra 98.3 0.0013 2.7E-08 64.7 29.1 154 276-460 243-405 (405)
110 PF02350 Epimerase_2: UDP-N-ac 98.2 0.00013 2.8E-09 69.9 18.7 161 271-458 178-346 (346)
111 PRK15484 lipopolysaccharide 1, 98.1 0.00011 2.5E-09 71.6 16.5 115 331-459 255-377 (380)
112 cd03813 GT1_like_3 This family 98.1 0.0016 3.5E-08 65.6 25.1 111 333-457 354-474 (475)
113 PF13844 Glyco_transf_41: Glyc 98.1 9.8E-05 2.1E-09 72.1 14.4 172 271-459 282-466 (468)
114 PLN02501 digalactosyldiacylgly 98.0 0.0087 1.9E-07 61.1 26.7 100 335-457 603-707 (794)
115 TIGR02918 accessory Sec system 98.0 0.0015 3.2E-08 65.8 21.8 166 274-460 319-500 (500)
116 COG0381 WecB UDP-N-acetylgluco 97.9 0.00043 9.3E-09 65.1 14.8 158 271-458 202-369 (383)
117 PRK10017 colanic acid biosynth 97.9 0.032 6.9E-07 54.9 28.8 177 264-457 225-422 (426)
118 cd04946 GT1_AmsK_like This fam 97.8 0.00045 9.8E-09 68.1 14.5 165 273-454 229-406 (407)
119 PF00534 Glycos_transf_1: Glyc 97.8 0.00039 8.4E-09 59.4 12.2 134 271-419 12-158 (172)
120 PRK15490 Vi polysaccharide bio 97.8 0.045 9.8E-07 55.0 27.3 113 333-459 455-575 (578)
121 cd04949 GT1_gtfA_like This fam 97.7 0.0043 9.2E-08 60.3 19.5 98 333-437 261-364 (372)
122 COG1817 Uncharacterized protei 97.7 0.006 1.3E-07 55.4 17.9 102 26-144 11-113 (346)
123 COG5017 Uncharacterized conser 97.7 0.00039 8.4E-09 54.5 8.9 125 276-419 2-142 (161)
124 cd01635 Glycosyltransferase_GT 97.5 0.011 2.4E-07 52.5 17.1 49 333-383 161-217 (229)
125 PRK09814 beta-1,6-galactofuran 97.4 0.0013 2.7E-08 63.0 10.0 110 333-456 207-332 (333)
126 COG3914 Spy Predicted O-linked 97.2 0.011 2.4E-07 58.1 14.6 132 271-413 427-572 (620)
127 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0014 3.1E-08 53.4 7.5 80 332-419 52-135 (135)
128 TIGR02193 heptsyl_trn_I lipopo 97.2 0.033 7.1E-07 52.9 17.6 132 272-417 178-319 (319)
129 PRK14098 glycogen synthase; Pr 97.1 0.0096 2.1E-07 60.0 13.9 167 273-459 306-485 (489)
130 PF06722 DUF1205: Protein of u 96.8 0.0015 3.2E-08 49.4 4.0 63 262-327 29-96 (97)
131 PRK10916 ADP-heptose:LPS hepto 96.8 0.18 3.8E-06 48.6 19.3 103 15-140 1-106 (348)
132 PF13477 Glyco_trans_4_2: Glyc 96.8 0.02 4.4E-07 46.8 11.0 103 16-143 1-107 (139)
133 TIGR02195 heptsyl_trn_II lipop 96.5 0.29 6.2E-06 46.8 18.4 102 16-140 1-105 (334)
134 PHA01633 putative glycosyl tra 96.5 0.026 5.6E-07 53.5 10.5 101 333-437 201-325 (335)
135 PRK10964 ADP-heptose:LPS hepto 96.4 0.48 1E-05 45.1 18.8 134 273-418 178-321 (322)
136 KOG4626 O-linked N-acetylgluco 96.4 0.025 5.5E-07 56.0 9.8 122 271-402 756-889 (966)
137 TIGR02201 heptsyl_trn_III lipo 96.3 0.24 5.2E-06 47.6 16.3 105 16-140 1-108 (344)
138 PRK10422 lipopolysaccharide co 96.3 0.51 1.1E-05 45.5 18.6 107 13-140 4-113 (352)
139 COG0859 RfaF ADP-heptose:LPS h 96.3 0.48 1E-05 45.3 18.1 105 15-141 2-108 (334)
140 PHA01630 putative group 1 glyc 96.2 0.21 4.5E-06 47.7 15.3 114 339-460 196-331 (331)
141 cd03789 GT1_LPS_heptosyltransf 96.2 0.47 1E-05 44.0 17.2 102 16-140 1-105 (279)
142 PLN02939 transferase, transfer 96.2 0.072 1.6E-06 56.7 12.6 114 333-459 837-966 (977)
143 PF06258 Mito_fiss_Elm1: Mitoc 96.1 0.27 5.9E-06 46.2 15.1 58 342-402 221-282 (311)
144 PF13579 Glyco_trans_4_4: Glyc 95.8 0.02 4.4E-07 47.6 5.8 97 29-143 5-104 (160)
145 PF13524 Glyco_trans_1_2: Glyc 95.6 0.1 2.2E-06 39.1 8.4 83 358-455 9-92 (92)
146 PF12000 Glyco_trans_4_3: Gkyc 95.6 0.14 2.9E-06 43.3 9.5 91 40-142 1-95 (171)
147 PF01975 SurE: Survival protei 95.2 0.22 4.7E-06 43.3 10.1 113 15-144 1-134 (196)
148 PRK13932 stationary phase surv 94.8 0.82 1.8E-05 41.4 12.9 115 11-144 2-134 (257)
149 PRK14099 glycogen synthase; Pr 94.4 1.1 2.4E-05 45.2 14.3 110 337-459 355-478 (485)
150 PF08660 Alg14: Oligosaccharid 93.6 0.49 1.1E-05 40.1 8.5 111 18-143 2-129 (170)
151 COG4370 Uncharacterized protei 93.3 0.26 5.7E-06 44.8 6.5 85 338-430 300-387 (412)
152 TIGR02400 trehalose_OtsA alpha 93.1 0.9 2E-05 45.4 10.7 104 339-459 342-456 (456)
153 PF13439 Glyco_transf_4: Glyco 92.9 0.85 1.8E-05 38.3 9.2 31 24-54 11-41 (177)
154 cd03788 GT1_TPS Trehalose-6-Ph 91.4 4.2 9.2E-05 40.8 13.3 103 338-457 346-459 (460)
155 TIGR00087 surE 5'/3'-nucleotid 91.2 5.5 0.00012 35.9 12.4 110 15-144 1-129 (244)
156 PRK13933 stationary phase surv 90.5 7.4 0.00016 35.3 12.6 38 15-54 1-38 (253)
157 PRK00346 surE 5'(3')-nucleotid 90.5 7.1 0.00015 35.4 12.4 108 15-144 1-125 (250)
158 PRK13934 stationary phase surv 90.1 8.3 0.00018 35.2 12.5 38 15-54 1-38 (266)
159 COG0438 RfaG Glycosyltransfera 89.5 18 0.00038 33.6 16.0 111 333-458 257-375 (381)
160 COG0496 SurE Predicted acid ph 89.3 5.9 0.00013 35.6 10.8 39 15-55 1-39 (252)
161 PRK02261 methylaspartate mutas 89.3 0.79 1.7E-05 37.3 5.0 41 12-52 1-41 (137)
162 KOG1111 N-acetylglucosaminyltr 87.7 26 0.00056 33.3 18.1 87 286-381 208-305 (426)
163 TIGR03713 acc_sec_asp1 accesso 87.5 2.1 4.6E-05 43.5 7.7 92 333-437 409-507 (519)
164 PF02951 GSH-S_N: Prokaryotic 87.3 1.1 2.3E-05 35.5 4.3 37 15-51 1-40 (119)
165 PRK13935 stationary phase surv 87.1 13 0.00029 33.6 11.8 38 15-54 1-38 (253)
166 COG1618 Predicted nucleotide k 86.5 2.6 5.6E-05 35.0 6.2 56 13-70 4-60 (179)
167 cd03793 GT1_Glycogen_synthase_ 86.4 4.2 9.1E-05 41.4 9.0 104 342-456 467-583 (590)
168 PRK02797 4-alpha-L-fucosyltran 85.4 15 0.00032 34.3 11.2 137 275-418 146-293 (322)
169 PF04464 Glyphos_transf: CDP-G 84.8 1.4 3.1E-05 42.7 4.9 110 333-454 252-368 (369)
170 PF02310 B12-binding: B12 bind 84.5 5.2 0.00011 31.5 7.3 36 16-51 2-37 (121)
171 PRK13931 stationary phase surv 84.2 28 0.00061 31.8 12.5 109 15-143 1-129 (261)
172 PRK05986 cob(I)alamin adenolsy 84.1 6.8 0.00015 33.8 8.0 101 12-125 20-126 (191)
173 PF02441 Flavoprotein: Flavopr 84.0 1.5 3.2E-05 35.3 3.9 37 15-52 1-37 (129)
174 cd02067 B12-binding B12 bindin 81.8 2.3 5E-05 33.6 4.2 36 16-51 1-36 (119)
175 cd00561 CobA_CobO_BtuR ATP:cor 81.1 14 0.00029 31.0 8.5 98 15-125 3-106 (159)
176 PRK08305 spoVFB dipicolinate s 80.3 2.9 6.2E-05 36.3 4.4 38 13-51 4-42 (196)
177 PLN03063 alpha,alpha-trehalose 80.2 9.6 0.00021 41.1 9.2 98 345-458 371-476 (797)
178 PRK14501 putative bifunctional 79.7 27 0.00059 37.4 12.5 110 337-459 346-462 (726)
179 TIGR00715 precor6x_red precorr 79.4 16 0.00034 33.4 9.2 33 345-377 191-229 (256)
180 PF04127 DFP: DNA / pantothena 79.1 2.6 5.6E-05 36.3 3.8 39 14-52 3-53 (185)
181 PF12146 Hydrolase_4: Putative 79.1 5.5 0.00012 28.8 5.0 35 14-48 15-49 (79)
182 TIGR00708 cobA cob(I)alamin ad 78.2 14 0.00031 31.3 7.9 97 14-124 5-107 (173)
183 PF07429 Glyco_transf_56: 4-al 77.6 47 0.001 31.6 11.6 138 274-418 184-332 (360)
184 TIGR02015 BchY chlorophyllide 77.4 17 0.00037 35.9 9.5 95 15-142 286-380 (422)
185 PF05159 Capsule_synth: Capsul 76.5 17 0.00037 33.3 8.8 41 336-379 186-226 (269)
186 COG0297 GlgA Glycogen synthase 76.0 93 0.002 31.4 14.8 168 275-459 295-477 (487)
187 COG2910 Putative NADH-flavin r 75.0 3.8 8.2E-05 34.8 3.5 33 15-51 1-33 (211)
188 COG2185 Sbm Methylmalonyl-CoA 74.9 5.2 0.00011 32.5 4.1 39 12-50 10-48 (143)
189 COG4394 Uncharacterized protei 74.3 58 0.0013 29.9 10.8 111 336-459 241-367 (370)
190 cd01980 Chlide_reductase_Y Chl 73.9 28 0.00061 34.4 10.0 96 15-143 281-376 (416)
191 PRK14099 glycogen synthase; Pr 72.2 6.7 0.00014 39.7 5.3 42 12-53 1-48 (485)
192 PF00731 AIRC: AIR carboxylase 71.9 56 0.0012 27.0 11.1 136 275-438 2-148 (150)
193 COG0052 RpsB Ribosomal protein 71.7 11 0.00024 33.7 5.7 33 114-146 156-190 (252)
194 TIGR02919 accessory Sec system 70.8 1.2E+02 0.0025 30.3 14.0 92 333-435 328-425 (438)
195 PRK13982 bifunctional SbtC-lik 70.4 10 0.00022 37.8 6.0 40 13-52 255-306 (475)
196 cd01425 RPS2 Ribosomal protein 70.4 7.9 0.00017 33.6 4.7 32 114-145 127-160 (193)
197 PRK09620 hypothetical protein; 69.2 25 0.00055 31.4 7.8 39 13-51 2-52 (229)
198 PRK00090 bioD dithiobiotin syn 69.1 46 0.001 29.4 9.6 34 17-50 2-36 (222)
199 TIGR02852 spore_dpaB dipicolin 68.3 7.1 0.00015 33.6 3.8 37 15-51 1-37 (187)
200 cd01974 Nitrogenase_MoFe_beta 68.3 59 0.0013 32.4 10.9 95 13-142 302-402 (435)
201 COG2109 BtuR ATP:corrinoid ade 68.2 40 0.00086 29.0 8.1 100 13-125 27-133 (198)
202 PRK05632 phosphate acetyltrans 67.7 71 0.0015 34.0 11.9 102 16-145 4-116 (684)
203 cd02070 corrinoid_protein_B12- 66.4 12 0.00025 32.8 4.9 39 13-51 81-119 (201)
204 PRK06718 precorrin-2 dehydroge 65.4 58 0.0012 28.5 9.1 143 271-439 9-165 (202)
205 PF01075 Glyco_transf_9: Glyco 65.4 8 0.00017 34.9 3.9 98 272-377 104-208 (247)
206 COG2861 Uncharacterized protei 65.1 53 0.0012 29.3 8.5 39 95-141 138-179 (250)
207 TIGR02370 pyl_corrinoid methyl 64.8 13 0.00029 32.3 5.0 40 13-52 83-122 (197)
208 TIGR00347 bioD dethiobiotin sy 64.4 40 0.00086 28.2 7.8 29 22-50 6-34 (166)
209 PRK12311 rpsB 30S ribosomal pr 64.4 14 0.0003 34.9 5.3 33 114-146 152-186 (326)
210 PF00551 Formyl_trans_N: Formy 64.2 17 0.00036 31.2 5.4 103 15-144 1-110 (181)
211 smart00851 MGS MGS-like domain 63.6 30 0.00064 25.6 6.1 79 31-139 2-89 (90)
212 TIGR03029 EpsG chain length de 63.3 71 0.0015 29.3 9.9 38 13-50 101-140 (274)
213 PRK01077 cobyrinic acid a,c-di 63.0 36 0.00078 34.0 8.3 107 16-145 5-124 (451)
214 COG1663 LpxK Tetraacyldisaccha 62.8 25 0.00055 33.1 6.5 35 20-54 55-89 (336)
215 PRK05920 aromatic acid decarbo 62.7 13 0.00027 32.6 4.4 38 14-52 3-40 (204)
216 cd02071 MM_CoA_mut_B12_BD meth 62.1 14 0.00029 29.3 4.2 36 16-51 1-36 (122)
217 PRK06249 2-dehydropantoate 2-r 61.9 11 0.00024 35.5 4.3 36 11-51 2-37 (313)
218 PRK07313 phosphopantothenoylcy 61.8 11 0.00024 32.4 3.8 37 15-52 2-38 (182)
219 TIGR01470 cysG_Nterm siroheme 61.6 1.1E+02 0.0024 26.7 10.7 145 272-439 9-165 (205)
220 TIGR02113 coaC_strep phosphopa 61.6 13 0.00028 31.8 4.2 36 15-51 1-36 (177)
221 PF06925 MGDG_synth: Monogalac 61.6 7.2 0.00016 33.0 2.7 23 27-49 1-24 (169)
222 TIGR02398 gluc_glyc_Psyn gluco 60.7 1.1E+02 0.0024 30.9 11.2 107 336-458 365-481 (487)
223 KOG3062 RNA polymerase II elon 60.1 55 0.0012 29.1 7.6 34 17-50 4-38 (281)
224 cd07039 TPP_PYR_POX Pyrimidine 59.6 1.1E+02 0.0023 25.8 10.3 28 352-379 64-97 (164)
225 PF10093 DUF2331: Uncharacteri 59.3 1.8E+02 0.0038 28.2 20.4 84 289-377 195-288 (374)
226 PRK14098 glycogen synthase; Pr 59.2 19 0.0004 36.5 5.6 41 13-53 4-50 (489)
227 COG0041 PurE Phosphoribosylcar 58.8 1E+02 0.0022 25.4 10.5 137 275-439 4-151 (162)
228 PRK11519 tyrosine kinase; Prov 58.3 68 0.0015 34.3 9.8 117 13-143 524-668 (719)
229 cd02069 methionine_synthase_B1 57.9 21 0.00045 31.5 5.0 39 13-51 87-125 (213)
230 PF01210 NAD_Gly3P_dh_N: NAD-d 57.7 8.5 0.00018 32.1 2.4 31 16-51 1-31 (157)
231 TIGR00379 cobB cobyrinic acid 57.6 56 0.0012 32.7 8.5 106 17-145 2-120 (449)
232 PF09314 DUF1972: Domain of un 57.6 22 0.00048 30.5 4.9 55 15-69 2-62 (185)
233 COG1797 CobB Cobyrinic acid a, 57.5 15 0.00032 35.9 4.2 33 16-48 2-35 (451)
234 PLN02929 NADH kinase 56.5 16 0.00034 34.1 4.1 65 349-419 64-137 (301)
235 PF02606 LpxK: Tetraacyldisacc 56.4 57 0.0012 31.0 8.0 36 20-55 43-78 (326)
236 PRK01175 phosphoribosylformylg 56.1 86 0.0019 28.7 8.8 58 13-73 2-59 (261)
237 PRK12475 thiamine/molybdopteri 56.0 53 0.0011 31.4 7.7 33 13-50 23-56 (338)
238 TIGR01285 nifN nitrogenase mol 55.6 49 0.0011 32.9 7.7 88 14-142 311-398 (432)
239 COG3660 Predicted nucleoside-d 55.6 1.7E+02 0.0036 26.8 16.2 38 339-377 234-271 (329)
240 PRK13973 thymidylate kinase; P 55.5 76 0.0016 27.9 8.3 39 13-51 2-40 (213)
241 cd03466 Nitrogenase_NifN_2 Nit 55.5 1.9E+02 0.0041 28.7 11.9 26 114-142 372-397 (429)
242 cd02037 MRP-like MRP (Multiple 55.4 37 0.00081 28.5 6.1 31 21-51 7-37 (169)
243 PF02572 CobA_CobO_BtuR: ATP:c 55.2 40 0.00086 28.6 6.0 99 13-124 2-106 (172)
244 PRK00784 cobyric acid synthase 54.6 95 0.0021 31.4 9.7 35 16-50 4-39 (488)
245 cd07038 TPP_PYR_PDC_IPDC_like 54.6 71 0.0015 26.7 7.5 28 352-379 60-93 (162)
246 COG1484 DnaC DNA replication p 53.9 21 0.00045 32.6 4.5 39 13-51 104-142 (254)
247 PLN02939 transferase, transfer 53.3 26 0.00057 38.1 5.6 42 12-53 479-526 (977)
248 TIGR01425 SRP54_euk signal rec 53.3 64 0.0014 31.9 7.9 40 14-53 100-139 (429)
249 PF06506 PrpR_N: Propionate ca 53.3 22 0.00047 30.3 4.3 69 350-419 33-124 (176)
250 cd03114 ArgK-like The function 53.2 1.1E+02 0.0023 25.1 8.3 35 17-51 2-36 (148)
251 KOG0780 Signal recognition par 52.9 40 0.00087 32.5 6.1 41 14-54 101-141 (483)
252 PRK06732 phosphopantothenate-- 52.5 36 0.00078 30.4 5.7 31 19-51 19-49 (229)
253 KOG2941 Beta-1,4-mannosyltrans 52.4 2.2E+02 0.0047 27.3 26.4 61 10-70 8-70 (444)
254 PRK06719 precorrin-2 dehydroge 52.1 22 0.00047 29.7 4.0 36 11-51 10-45 (157)
255 TIGR01501 MthylAspMutase methy 52.1 27 0.0006 28.2 4.4 38 14-51 1-38 (134)
256 COG0125 Tmk Thymidylate kinase 52.0 73 0.0016 28.0 7.4 42 12-53 1-42 (208)
257 KOG0853 Glycosyltransferase [C 51.4 23 0.0005 35.4 4.6 53 363-420 381-434 (495)
258 TIGR00521 coaBC_dfp phosphopan 50.6 22 0.00048 34.7 4.3 39 13-52 2-40 (390)
259 TIGR00421 ubiX_pad polyprenyl 50.5 18 0.0004 31.0 3.3 35 16-51 1-35 (181)
260 TIGR01283 nifE nitrogenase mol 50.5 1.5E+02 0.0032 29.8 10.3 94 13-141 325-419 (456)
261 cd07025 Peptidase_S66 LD-Carbo 50.4 39 0.00085 31.3 5.8 73 286-379 46-120 (282)
262 PRK10867 signal recognition pa 50.3 79 0.0017 31.4 8.1 41 14-54 100-141 (433)
263 PF02826 2-Hacid_dh_C: D-isome 50.3 64 0.0014 27.4 6.7 101 271-414 35-142 (178)
264 PRK06849 hypothetical protein; 50.2 32 0.0007 33.6 5.5 35 13-51 3-37 (389)
265 PLN02470 acetolactate synthase 50.0 67 0.0015 33.4 8.1 93 279-379 2-110 (585)
266 PRK06029 3-octaprenyl-4-hydrox 49.8 24 0.00052 30.4 3.9 37 15-52 2-39 (185)
267 COG1703 ArgK Putative periplas 49.7 48 0.001 30.8 5.9 40 12-51 49-88 (323)
268 cd02032 Bchl_like This family 49.5 28 0.00062 31.8 4.7 37 15-51 1-37 (267)
269 TIGR01281 DPOR_bchL light-inde 49.3 29 0.00063 31.8 4.8 36 15-50 1-36 (268)
270 COG0801 FolK 7,8-dihydro-6-hyd 49.2 36 0.00077 28.4 4.7 30 274-303 2-31 (160)
271 PRK04020 rps2P 30S ribosomal p 49.1 11 0.00024 32.9 1.7 32 114-145 114-147 (204)
272 PF02374 ArsA_ATPase: Anion-tr 49.1 27 0.00058 32.8 4.5 40 15-54 1-41 (305)
273 cd01968 Nitrogenase_NifE_I Nit 49.0 1.8E+02 0.004 28.6 10.6 94 13-141 286-380 (410)
274 TIGR01012 Sa_S2_E_A ribosomal 48.9 10 0.00022 32.9 1.5 32 114-145 108-141 (196)
275 COG4081 Uncharacterized protei 48.6 40 0.00086 26.7 4.5 37 15-51 4-41 (148)
276 PRK13789 phosphoribosylamine-- 48.2 59 0.0013 32.3 7.0 34 13-51 3-36 (426)
277 PTZ00254 40S ribosomal protein 48.2 12 0.00026 33.7 1.8 33 114-146 118-152 (249)
278 CHL00072 chlL photochlorophyll 48.0 34 0.00073 31.9 5.0 37 15-51 1-37 (290)
279 TIGR01162 purE phosphoribosyla 48.0 1.4E+02 0.003 24.9 7.8 134 278-438 3-146 (156)
280 PRK06270 homoserine dehydrogen 47.7 1.3E+02 0.0028 28.9 9.0 59 342-401 80-150 (341)
281 cd07035 TPP_PYR_POX_like Pyrim 47.1 1.6E+02 0.0034 24.1 9.0 26 354-379 62-93 (155)
282 PRK02649 ppnK inorganic polyph 46.8 35 0.00076 32.1 4.8 54 348-419 67-124 (305)
283 COG0299 PurN Folate-dependent 46.6 2E+02 0.0042 25.0 9.4 134 274-435 52-187 (200)
284 PRK05114 hypothetical protein; 46.2 69 0.0015 21.3 4.6 30 425-458 13-42 (59)
285 COG1327 Predicted transcriptio 46.2 20 0.00043 29.3 2.6 55 361-417 37-92 (156)
286 PRK01911 ppnK inorganic polyph 46.1 45 0.00099 31.1 5.4 57 345-419 60-120 (292)
287 PF08323 Glyco_transf_5: Starc 46.0 17 0.00037 32.9 2.6 24 29-52 20-43 (245)
288 cd01141 TroA_d Periplasmic bin 45.5 31 0.00067 29.4 4.1 37 100-142 61-99 (186)
289 COG0541 Ffh Signal recognition 45.4 67 0.0015 31.5 6.5 41 14-54 100-140 (451)
290 KOG0541 Alkyl hydroperoxide re 45.3 41 0.00089 27.7 4.3 39 13-51 42-87 (171)
291 PF03701 UPF0181: Uncharacteri 45.1 76 0.0017 20.5 4.5 30 425-458 13-42 (51)
292 PRK14478 nitrogenase molybdenu 45.0 1.4E+02 0.003 30.2 9.1 94 13-140 323-416 (475)
293 TIGR00959 ffh signal recogniti 44.9 89 0.0019 31.0 7.5 41 14-54 99-140 (428)
294 cd01981 Pchlide_reductase_B Pc 44.6 2.2E+02 0.0047 28.3 10.4 27 114-143 370-396 (430)
295 COG4088 Predicted nucleotide k 44.5 27 0.00058 30.6 3.3 36 16-51 3-38 (261)
296 COG3340 PepE Peptidase E [Amin 44.5 2E+02 0.0044 25.3 8.6 88 263-379 24-126 (224)
297 PRK05579 bifunctional phosphop 44.4 32 0.0007 33.7 4.4 39 13-52 5-43 (399)
298 PRK06522 2-dehydropantoate 2-r 44.2 27 0.00059 32.5 3.8 31 15-50 1-31 (304)
299 cd01977 Nitrogenase_VFe_alpha 44.0 1E+02 0.0022 30.5 7.9 25 114-141 358-382 (415)
300 PRK14477 bifunctional nitrogen 43.7 2.1E+02 0.0045 31.7 10.8 96 13-142 319-414 (917)
301 PF09001 DUF1890: Domain of un 43.6 26 0.00056 28.2 2.9 26 26-51 11-36 (139)
302 PRK04539 ppnK inorganic polyph 43.3 40 0.00087 31.5 4.7 56 346-419 65-124 (296)
303 PF12500 TRSP: TRSP domain C t 43.3 67 0.0015 26.7 5.4 39 13-53 56-94 (155)
304 cd07062 Peptidase_S66_mccF_lik 41.7 60 0.0013 30.6 5.6 73 286-379 50-124 (308)
305 PF10087 DUF2325: Uncharacteri 41.1 73 0.0016 23.9 5.1 35 114-148 48-88 (97)
306 TIGR02482 PFKA_ATP 6-phosphofr 40.9 25 0.00054 32.9 2.9 37 346-382 86-126 (301)
307 PRK12446 undecaprenyldiphospho 40.9 1.1E+02 0.0023 29.5 7.3 96 274-377 3-120 (352)
308 PRK06276 acetolactate synthase 40.9 1.2E+02 0.0027 31.5 8.3 65 352-419 64-148 (586)
309 PRK03372 ppnK inorganic polyph 40.8 41 0.0009 31.6 4.3 56 346-419 69-128 (306)
310 PRK05647 purN phosphoribosylgl 40.6 1.9E+02 0.004 25.3 8.1 34 15-51 2-37 (200)
311 COG3349 Uncharacterized conser 40.6 30 0.00064 34.6 3.5 32 15-51 1-32 (485)
312 PRK05579 bifunctional phosphop 40.5 3.1E+02 0.0068 26.9 10.5 135 272-418 6-182 (399)
313 PRK03378 ppnK inorganic polyph 40.5 57 0.0012 30.4 5.2 56 346-419 60-119 (292)
314 PF01695 IstB_IS21: IstB-like 40.4 55 0.0012 27.9 4.8 44 8-51 41-84 (178)
315 COG0132 BioD Dethiobiotin synt 40.3 2.2E+02 0.0049 25.3 8.6 37 15-51 2-40 (223)
316 PRK14619 NAD(P)H-dependent gly 40.0 37 0.00081 31.9 4.0 34 13-51 3-36 (308)
317 TIGR01007 eps_fam capsular exo 39.9 56 0.0012 28.4 4.9 39 13-51 15-55 (204)
318 PLN02712 arogenate dehydrogena 39.7 33 0.00072 36.2 3.9 44 2-50 357-400 (667)
319 PF03721 UDPG_MGDP_dh_N: UDP-g 39.6 47 0.001 28.6 4.2 32 15-51 1-32 (185)
320 PRK04148 hypothetical protein; 39.5 60 0.0013 26.3 4.5 32 13-50 16-47 (134)
321 PRK09841 cryptic autophosphory 39.5 3.9E+02 0.0085 28.7 12.0 39 13-51 529-569 (726)
322 COG2159 Predicted metal-depend 39.5 86 0.0019 29.3 6.2 111 237-367 96-210 (293)
323 PF06180 CbiK: Cobalt chelatas 39.1 50 0.0011 30.2 4.5 41 273-313 1-44 (262)
324 PRK11914 diacylglycerol kinase 39.1 1.2E+02 0.0026 28.4 7.3 68 288-379 25-96 (306)
325 PRK13869 plasmid-partitioning 39.1 55 0.0012 32.2 5.1 38 13-50 119-158 (405)
326 PF02780 Transketolase_C: Tran 39.0 45 0.00098 26.3 3.8 39 11-51 6-44 (124)
327 TIGR01284 alt_nitrog_alph nitr 39.0 1E+02 0.0023 30.9 7.1 90 14-141 325-419 (457)
328 PF01372 Melittin: Melittin; 38.9 5.1 0.00011 21.3 -1.1 17 360-376 1-17 (26)
329 PF07991 IlvN: Acetohydroxy ac 38.9 30 0.00064 29.0 2.7 52 13-69 3-55 (165)
330 TIGR02700 flavo_MJ0208 archaeo 38.7 46 0.00099 29.9 4.2 36 16-51 1-38 (234)
331 PLN02948 phosphoribosylaminoim 38.7 4.7E+02 0.01 27.2 12.4 35 12-51 20-54 (577)
332 COG4566 TtrR Response regulato 38.7 1.5E+02 0.0033 25.5 6.9 51 367-419 72-122 (202)
333 PRK07710 acetolactate synthase 38.5 1.2E+02 0.0027 31.4 7.8 27 352-378 79-111 (571)
334 PLN02935 Bifunctional NADH kin 38.4 58 0.0013 32.7 5.1 54 348-419 261-318 (508)
335 PF03853 YjeF_N: YjeF-related 38.3 60 0.0013 27.4 4.6 37 12-49 23-59 (169)
336 PF10649 DUF2478: Protein of u 37.9 2.1E+02 0.0046 23.9 7.6 110 20-144 4-132 (159)
337 COG0205 PfkA 6-phosphofructoki 37.9 1.7E+02 0.0037 28.0 8.0 116 14-141 2-124 (347)
338 PRK07414 cob(I)yrinic acid a,c 37.8 2.6E+02 0.0056 23.9 9.4 108 5-124 11-125 (178)
339 PRK12342 hypothetical protein; 37.6 57 0.0012 29.7 4.5 31 114-144 109-145 (254)
340 cd02034 CooC The accessory pro 37.5 82 0.0018 24.6 5.0 36 16-51 1-36 (116)
341 PRK00048 dihydrodipicolinate r 37.5 2E+02 0.0044 26.1 8.3 57 342-402 53-115 (257)
342 COG0409 HypD Hydrogenase matur 37.3 48 0.0011 30.9 4.0 69 368-437 210-293 (364)
343 PRK04885 ppnK inorganic polyph 37.2 27 0.00059 32.0 2.5 29 349-379 35-69 (265)
344 PRK12921 2-dehydropantoate 2-r 37.1 40 0.00086 31.5 3.8 31 15-50 1-31 (305)
345 PRK06718 precorrin-2 dehydroge 37.1 50 0.0011 28.9 4.0 35 12-51 8-42 (202)
346 COG1698 Uncharacterized protei 36.6 1.1E+02 0.0023 22.6 4.8 48 408-458 17-65 (93)
347 TIGR00640 acid_CoA_mut_C methy 36.4 73 0.0016 25.6 4.6 38 14-51 2-39 (132)
348 PRK06222 ferredoxin-NADP(+) re 36.3 83 0.0018 29.1 5.6 37 13-51 97-133 (281)
349 PRK13604 luxD acyl transferase 36.2 72 0.0016 29.9 5.1 35 14-48 36-70 (307)
350 PRK08674 bifunctional phosphog 36.1 2.4E+02 0.0052 26.9 8.9 59 14-73 78-136 (337)
351 PRK08322 acetolactate synthase 36.0 1.6E+02 0.0034 30.4 8.1 27 352-378 64-96 (547)
352 TIGR02483 PFK_mixed phosphofru 35.9 34 0.00073 32.5 3.0 37 346-382 89-128 (324)
353 PRK13768 GTPase; Provisional 35.9 97 0.0021 28.2 5.9 37 15-51 3-39 (253)
354 cd00763 Bacterial_PFK Phosphof 35.9 33 0.00072 32.4 2.9 38 345-382 86-126 (317)
355 TIGR00313 cobQ cobyric acid sy 35.7 4.8E+02 0.01 26.4 11.3 28 24-51 9-36 (475)
356 PRK05299 rpsB 30S ribosomal pr 35.7 21 0.00046 32.5 1.5 33 114-146 157-191 (258)
357 PRK01231 ppnK inorganic polyph 35.6 70 0.0015 29.9 5.0 54 348-419 61-118 (295)
358 cd07037 TPP_PYR_MenD Pyrimidin 35.5 61 0.0013 27.2 4.1 26 354-379 63-94 (162)
359 CHL00067 rps2 ribosomal protei 35.3 25 0.00053 31.5 1.9 33 114-146 161-195 (230)
360 PRK07206 hypothetical protein; 35.2 1.3E+02 0.0029 29.5 7.3 32 15-51 3-34 (416)
361 PRK05282 (alpha)-aspartyl dipe 35.0 2.2E+02 0.0048 25.5 7.8 44 263-308 24-67 (233)
362 PF02702 KdpD: Osmosensitive K 35.0 69 0.0015 27.9 4.4 38 14-51 5-42 (211)
363 PRK14569 D-alanyl-alanine synt 34.6 77 0.0017 29.6 5.2 38 13-50 2-43 (296)
364 PRK15062 hydrogenase isoenzyme 34.6 1.3E+02 0.0027 28.9 6.4 34 266-300 124-157 (364)
365 PRK07688 thiamine/molybdopteri 34.6 1.3E+02 0.0028 28.8 6.8 32 14-50 24-56 (339)
366 PRK13982 bifunctional SbtC-lik 34.6 59 0.0013 32.6 4.5 39 14-53 70-108 (475)
367 COG2084 MmsB 3-hydroxyisobutyr 34.6 55 0.0012 30.4 4.0 32 15-51 1-32 (286)
368 PRK00652 lpxK tetraacyldisacch 34.5 74 0.0016 30.2 5.0 40 15-54 50-91 (325)
369 PRK02155 ppnK NAD(+)/NADH kina 34.4 37 0.00081 31.6 3.0 54 348-419 62-119 (291)
370 PF06506 PrpR_N: Propionate ca 34.3 84 0.0018 26.7 4.9 112 26-147 17-155 (176)
371 COG1090 Predicted nucleoside-d 34.2 1.9E+02 0.0042 26.7 7.2 20 32-51 12-31 (297)
372 COG2210 Peroxiredoxin family p 34.2 89 0.0019 25.3 4.6 33 18-50 7-39 (137)
373 PLN02240 UDP-glucose 4-epimera 34.2 67 0.0014 30.6 4.9 33 14-50 5-37 (352)
374 TIGR01380 glut_syn glutathione 34.1 52 0.0011 31.1 3.9 37 15-51 1-40 (312)
375 PRK03359 putative electron tra 34.0 72 0.0016 29.1 4.7 31 114-144 112-148 (256)
376 PRK07236 hypothetical protein; 33.9 49 0.0011 32.2 3.9 37 9-50 1-37 (386)
377 TIGR01011 rpsB_bact ribosomal 33.9 24 0.00052 31.5 1.5 33 114-146 155-189 (225)
378 TIGR00639 PurN phosphoribosylg 33.8 3E+02 0.0065 23.7 8.3 34 15-51 1-36 (190)
379 TIGR02699 archaeo_AfpA archaeo 33.8 59 0.0013 27.6 3.8 36 17-53 2-39 (174)
380 PRK04761 ppnK inorganic polyph 33.6 33 0.00071 31.0 2.4 28 350-379 26-57 (246)
381 PF04244 DPRP: Deoxyribodipyri 33.5 44 0.00095 29.8 3.1 25 27-51 47-71 (224)
382 cd01075 NAD_bind_Leu_Phe_Val_D 33.5 57 0.0012 28.4 3.8 33 11-48 25-57 (200)
383 PRK03501 ppnK inorganic polyph 33.4 61 0.0013 29.7 4.1 53 350-419 40-97 (264)
384 TIGR00041 DTMP_kinase thymidyl 33.2 1.2E+02 0.0026 26.0 5.9 39 13-51 2-40 (195)
385 COG3195 Uncharacterized protei 33.1 1.6E+02 0.0034 24.7 5.9 75 362-437 88-164 (176)
386 cd06559 Endonuclease_V Endonuc 32.9 42 0.00091 29.5 2.9 40 97-143 83-129 (208)
387 PF01497 Peripla_BP_2: Peripla 32.9 58 0.0013 28.9 4.0 39 101-145 53-93 (238)
388 cd02065 B12-binding_like B12 b 32.8 75 0.0016 24.8 4.2 34 17-50 2-35 (125)
389 COG3140 Uncharacterized protei 32.8 1.3E+02 0.0028 19.8 4.2 27 427-457 15-41 (60)
390 cd01983 Fer4_NifH The Fer4_Nif 32.8 1E+02 0.0022 22.2 4.8 33 17-49 2-34 (99)
391 COG0569 TrkA K+ transport syst 32.8 56 0.0012 29.1 3.7 32 15-51 1-32 (225)
392 cd01147 HemV-2 Metal binding p 32.6 63 0.0014 29.2 4.2 38 101-144 67-107 (262)
393 PRK04940 hypothetical protein; 32.5 1.2E+02 0.0025 26.1 5.3 31 114-144 60-91 (180)
394 TIGR03026 NDP-sugDHase nucleot 32.5 61 0.0013 32.0 4.3 31 15-50 1-31 (411)
395 PF05693 Glycogen_syn: Glycoge 32.3 92 0.002 32.1 5.4 94 342-437 462-567 (633)
396 PF13450 NAD_binding_8: NAD(P) 32.2 57 0.0012 22.6 3.0 21 31-51 8-28 (68)
397 COG2085 Predicted dinucleotide 32.2 71 0.0015 28.0 4.1 32 15-51 2-33 (211)
398 PRK08229 2-dehydropantoate 2-r 32.2 52 0.0011 31.4 3.7 32 15-51 3-34 (341)
399 PRK14071 6-phosphofructokinase 31.4 43 0.00093 32.3 2.9 38 345-382 101-142 (360)
400 cd01421 IMPCH Inosine monophos 31.3 78 0.0017 27.2 4.1 44 29-75 11-56 (187)
401 PRK04946 hypothetical protein; 31.3 36 0.00078 29.1 2.1 57 291-365 112-169 (181)
402 PF08357 SEFIR: SEFIR domain; 31.2 67 0.0014 26.3 3.8 32 16-47 3-35 (150)
403 PRK13054 lipid kinase; Reviewe 31.0 2.4E+02 0.0052 26.3 7.9 30 349-380 56-93 (300)
404 PF06032 DUF917: Protein of un 30.9 47 0.001 32.0 3.1 104 19-141 15-122 (353)
405 PRK14092 2-amino-4-hydroxy-6-h 30.8 1.1E+02 0.0025 25.6 5.0 31 271-301 5-35 (163)
406 TIGR00147 lipid kinase, YegS/R 30.8 2.1E+02 0.0045 26.5 7.4 28 350-379 58-91 (293)
407 PRK03708 ppnK inorganic polyph 30.8 38 0.00083 31.3 2.4 29 349-379 57-88 (277)
408 PRK03202 6-phosphofructokinase 30.8 43 0.00094 31.7 2.8 37 346-382 88-127 (320)
409 cd00861 ProRS_anticodon_short 30.7 94 0.002 22.7 4.2 35 15-49 2-38 (94)
410 COG2120 Uncharacterized protei 30.7 90 0.0019 28.1 4.7 39 12-51 8-47 (237)
411 PRK13236 nitrogenase reductase 30.5 1E+02 0.0022 28.8 5.3 37 15-51 7-43 (296)
412 PF03446 NAD_binding_2: NAD bi 30.4 59 0.0013 27.2 3.3 31 15-50 2-32 (163)
413 TIGR01470 cysG_Nterm siroheme 30.4 75 0.0016 27.8 4.1 36 12-52 7-42 (205)
414 PRK06567 putative bifunctional 30.3 58 0.0013 35.8 3.9 34 12-50 381-414 (1028)
415 COG0503 Apt Adenine/guanine ph 30.3 98 0.0021 26.4 4.7 28 114-141 53-82 (179)
416 PF05225 HTH_psq: helix-turn-h 30.2 76 0.0016 20.0 3.0 26 405-432 1-26 (45)
417 PRK11064 wecC UDP-N-acetyl-D-m 30.1 72 0.0016 31.5 4.4 32 14-50 3-34 (415)
418 PRK07525 sulfoacetaldehyde ace 29.8 4.5E+02 0.0098 27.3 10.4 27 352-378 69-101 (588)
419 cd01840 SGNH_hydrolase_yrhL_li 29.8 1.2E+02 0.0025 24.8 5.0 39 272-311 50-88 (150)
420 PRK09444 pntB pyridine nucleot 29.6 82 0.0018 31.1 4.4 40 12-51 304-346 (462)
421 COG2894 MinD Septum formation 29.5 94 0.002 27.6 4.3 39 15-53 2-42 (272)
422 PRK13185 chlL protochlorophyll 29.5 94 0.002 28.4 4.8 36 15-50 3-38 (270)
423 PLN00016 RNA-binding protein; 29.4 65 0.0014 31.3 3.9 36 14-51 52-89 (378)
424 PRK07313 phosphopantothenoylcy 29.4 3.6E+02 0.0079 23.0 10.9 135 273-418 2-179 (182)
425 PLN02695 GDP-D-mannose-3',5'-e 29.3 1.2E+02 0.0025 29.4 5.7 36 11-50 18-53 (370)
426 PRK03094 hypothetical protein; 29.2 52 0.0011 23.8 2.3 20 31-50 10-29 (80)
427 COG0062 Uncharacterized conser 29.1 1.1E+02 0.0024 26.8 4.8 35 14-51 49-85 (203)
428 TIGR02128 G6PI_arch bifunction 29.1 4.9E+02 0.011 24.5 10.3 116 16-143 68-185 (308)
429 PF13460 NAD_binding_10: NADH( 29.0 65 0.0014 27.1 3.5 43 23-69 5-47 (183)
430 PRK14077 pnk inorganic polypho 29.0 46 0.001 30.9 2.6 32 346-379 61-96 (287)
431 PRK05858 hypothetical protein; 28.9 3.6E+02 0.0078 27.7 9.4 25 354-378 70-100 (542)
432 PF06564 YhjQ: YhjQ protein; 28.9 94 0.002 28.1 4.4 33 16-48 3-36 (243)
433 COG1937 Uncharacterized protei 28.7 2E+02 0.0042 21.4 5.3 26 434-460 63-88 (89)
434 cd02040 NifH NifH gene encodes 28.7 96 0.0021 28.2 4.8 37 15-51 2-38 (270)
435 PRK06555 pyrophosphate--fructo 28.6 44 0.00096 32.6 2.5 38 345-382 106-152 (403)
436 TIGR03837 efp_adjacent_2 conse 28.3 75 0.0016 30.5 3.8 39 336-377 245-286 (371)
437 PRK01372 ddl D-alanine--D-alan 28.3 93 0.002 29.0 4.7 39 13-51 3-45 (304)
438 PRK13059 putative lipid kinase 28.3 2.6E+02 0.0056 26.0 7.6 28 350-379 57-90 (295)
439 PRK02231 ppnK inorganic polyph 28.2 56 0.0012 30.1 3.0 34 344-379 37-74 (272)
440 TIGR02329 propionate_PrpR prop 28.1 56 0.0012 33.4 3.2 110 25-144 36-172 (526)
441 PF00289 CPSase_L_chain: Carba 28.0 1.5E+02 0.0033 22.9 5.0 67 289-367 12-88 (110)
442 TIGR03453 partition_RepA plasm 28.0 1E+02 0.0023 30.0 5.1 40 12-51 101-142 (387)
443 COG0240 GpsA Glycerol-3-phosph 28.0 84 0.0018 29.7 4.1 32 15-51 2-33 (329)
444 COG0162 TyrS Tyrosyl-tRNA synt 27.9 88 0.0019 30.6 4.4 36 15-51 35-73 (401)
445 TIGR00064 ftsY signal recognit 27.9 1.3E+02 0.0028 27.8 5.3 38 14-51 72-109 (272)
446 TIGR00460 fmt methionyl-tRNA f 27.9 74 0.0016 30.0 3.8 32 15-51 1-32 (313)
447 PRK09219 xanthine phosphoribos 27.7 1.2E+02 0.0027 26.1 4.9 30 114-143 50-81 (189)
448 TIGR01005 eps_transp_fam exopo 27.7 3.7E+02 0.008 29.0 9.5 38 14-51 545-584 (754)
449 PF03720 UDPG_MGDP_dh_C: UDP-g 27.6 75 0.0016 24.3 3.2 22 29-50 17-38 (106)
450 PRK08125 bifunctional UDP-gluc 27.6 1.7E+02 0.0036 31.0 6.8 32 15-51 1-33 (660)
451 COG1154 Dxs Deoxyxylulose-5-ph 27.6 5.4E+02 0.012 26.7 9.7 113 265-417 494-622 (627)
452 PF07355 GRDB: Glycine/sarcosi 27.5 1.2E+02 0.0025 29.0 4.9 37 347-393 266-302 (349)
453 COG0771 MurD UDP-N-acetylmuram 27.2 94 0.002 31.0 4.5 33 14-51 7-39 (448)
454 KOG1210 Predicted 3-ketosphing 27.2 1E+02 0.0022 28.9 4.4 39 10-51 28-66 (331)
455 PRK06546 pyruvate dehydrogenas 27.1 6.1E+02 0.013 26.3 10.7 58 355-418 459-518 (578)
456 PLN02496 probable phosphopanto 27.1 84 0.0018 27.6 3.7 40 13-54 18-57 (209)
457 PRK06526 transposase; Provisio 27.1 65 0.0014 29.3 3.2 44 7-50 91-134 (254)
458 TIGR00118 acolac_lg acetolacta 27.0 1.9E+02 0.004 29.9 6.9 28 352-379 65-98 (558)
459 COG0059 IlvC Ketol-acid reduct 27.0 58 0.0013 30.3 2.8 52 13-70 17-70 (338)
460 TIGR03018 pepcterm_TyrKin exop 26.8 1.4E+02 0.0031 26.0 5.3 38 14-51 34-74 (207)
461 PF05728 UPF0227: Uncharacteri 26.7 1.3E+02 0.0028 26.0 4.8 29 116-144 61-90 (187)
462 cd01452 VWA_26S_proteasome_sub 26.4 1.7E+02 0.0036 25.3 5.4 37 15-51 109-145 (187)
463 PRK02645 ppnK inorganic polyph 26.4 51 0.0011 31.0 2.5 29 349-379 57-89 (305)
464 PRK14072 6-phosphofructokinase 26.3 53 0.0011 32.4 2.6 38 345-382 97-143 (416)
465 TIGR01915 npdG NADPH-dependent 26.2 74 0.0016 28.1 3.4 31 15-50 1-32 (219)
466 PRK08155 acetolactate synthase 26.2 2.8E+02 0.0062 28.6 8.1 89 280-378 4-109 (564)
467 COG1422 Predicted membrane pro 26.1 1.6E+02 0.0035 25.5 5.1 81 363-455 24-105 (201)
468 PF00070 Pyr_redox: Pyridine n 26.1 1.1E+02 0.0024 21.7 3.7 22 30-51 10-31 (80)
469 PF02233 PNTB: NAD(P) transhyd 26.1 38 0.00083 33.6 1.6 40 12-51 305-347 (463)
470 PF03641 Lysine_decarbox: Poss 26.0 86 0.0019 25.2 3.4 33 346-379 50-92 (133)
471 PF09334 tRNA-synt_1g: tRNA sy 26.0 57 0.0012 31.9 2.8 28 26-53 17-47 (391)
472 PRK05802 hypothetical protein; 26.0 1.1E+02 0.0023 29.1 4.5 37 13-51 171-207 (320)
473 PRK14618 NAD(P)H-dependent gly 25.9 84 0.0018 29.8 3.9 33 14-51 4-36 (328)
474 cd03818 GT1_ExpC_like This fam 25.8 2.6E+02 0.0056 27.1 7.5 25 288-312 10-34 (396)
475 PRK02122 glucosamine-6-phospha 25.8 1.1E+02 0.0024 32.3 4.9 36 14-50 370-405 (652)
476 KOG3339 Predicted glycosyltran 25.8 98 0.0021 26.5 3.7 25 16-41 40-64 (211)
477 PRK12315 1-deoxy-D-xylulose-5- 25.8 5.1E+02 0.011 27.0 9.8 52 357-417 524-580 (581)
478 PF02583 Trns_repr_metal: Meta 25.7 2E+02 0.0043 21.0 5.0 27 434-460 59-85 (85)
479 PRK07454 short chain dehydroge 25.7 1.4E+02 0.0031 26.4 5.2 34 14-50 5-38 (241)
480 PF03698 UPF0180: Uncharacteri 25.7 63 0.0014 23.4 2.2 21 31-51 10-30 (80)
481 cd06219 DHOD_e_trans_like1 FAD 25.7 1.5E+02 0.0033 26.7 5.4 37 13-51 96-132 (248)
482 PRK09288 purT phosphoribosylgl 25.6 1.6E+02 0.0035 28.6 6.0 43 3-51 2-44 (395)
483 cd01965 Nitrogenase_MoFe_beta_ 25.5 1.1E+02 0.0024 30.3 4.8 26 114-142 371-396 (428)
484 TIGR00521 coaBC_dfp phosphopan 25.5 1.3E+02 0.0027 29.5 5.0 26 24-51 209-234 (390)
485 PRK12825 fabG 3-ketoacyl-(acyl 25.5 1.4E+02 0.0029 26.4 5.1 33 15-51 7-39 (249)
486 PRK08527 acetolactate synthase 25.5 3E+02 0.0066 28.4 8.2 27 352-378 67-99 (563)
487 PRK14620 NAD(P)H-dependent gly 25.3 82 0.0018 29.8 3.7 32 15-51 1-32 (326)
488 cd03412 CbiK_N Anaerobic cobal 25.3 1.1E+02 0.0025 24.3 4.0 39 273-311 1-41 (127)
489 PRK08410 2-hydroxyacid dehydro 25.3 3.2E+02 0.0069 25.7 7.6 62 271-360 144-205 (311)
490 TIGR00045 glycerate kinase. Th 25.3 1.3E+02 0.0029 29.1 5.0 89 336-434 270-370 (375)
491 PLN02884 6-phosphofructokinase 25.2 63 0.0014 31.8 2.9 38 345-382 137-183 (411)
492 PRK00054 dihydroorotate dehydr 25.1 1.6E+02 0.0036 26.5 5.5 42 8-51 96-137 (250)
493 PF01738 DLH: Dienelactone hyd 25.1 1.2E+02 0.0025 26.6 4.4 33 15-47 14-46 (218)
494 TIGR00355 purH phosphoribosyla 24.9 1E+02 0.0022 31.0 4.3 44 29-75 11-56 (511)
495 TIGR00244 transcriptional regu 24.9 54 0.0012 26.8 2.0 53 363-417 39-92 (147)
496 COG0665 DadA Glycine/D-amino a 24.9 90 0.002 30.1 4.0 34 13-51 3-36 (387)
497 PRK12367 short chain dehydroge 24.8 1.1E+02 0.0024 27.5 4.4 43 5-50 3-46 (245)
498 PRK00207 sulfur transfer compl 24.8 1.4E+02 0.003 23.9 4.4 25 26-50 15-40 (128)
499 PF07755 DUF1611: Protein of u 24.7 1.4E+02 0.003 27.9 4.9 38 14-51 112-150 (301)
500 PRK06835 DNA replication prote 24.7 1.4E+02 0.003 28.4 5.0 38 14-51 183-220 (329)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.4e-68 Score=518.06 Aligned_cols=442 Identities=43% Similarity=0.778 Sum_probs=347.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNA-CNYPHFEFHSISASLSETEASTEDMVAILIALNA 91 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+.... ....++++..+|++++++.........++..+..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~ 85 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNK 85 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHH
Confidence 357999999999999999999999999999999999998765321 1124699999999888743222233355555556
Q ss_pred hcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcC-CCCCCC--
Q 012613 92 KCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKC-YLPIQD-- 168 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~-- 168 (460)
.+...+.+.++.+.. +.+. ++++||+|.+..|+..+|+++|||++.|++++++......+.+...... +.|...
T Consensus 86 ~~~~~~~~~L~~l~~--~~~~-p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN02410 86 ECQVSFKDCLGQLVL--QQGN-EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPK 162 (451)
T ss_pred HhHHHHHHHHHHHHh--ccCC-CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccc
Confidence 677778787777643 2333 6799999999999999999999999999999998887665533222111 112111
Q ss_pred CcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccC
Q 012613 169 SQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKY 248 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~ 248 (460)
......+|+++.++..+++.............+.... .+..++.+++|||.+||+..++.+ +...++|+++|||++..
T Consensus 163 ~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l-~~~~~~~v~~vGpl~~~ 240 (451)
T PLN02410 163 GQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRL-QQQLQIPVYPIGPLHLV 240 (451)
T ss_pred cCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHH-HhccCCCEEEecccccc
Confidence 1111246676666666666322111222222222222 346788999999999999999998 77666689999999864
Q ss_pred CCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHH
Q 012613 249 FPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFV 328 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 328 (460)
... +....+.+.++.+||++++.++||||||||...++.+++.+++.+|+.++.+|||+++....++.++...+|++|.
T Consensus 241 ~~~-~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~ 319 (451)
T PLN02410 241 ASA-PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFS 319 (451)
T ss_pred cCC-CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHH
Confidence 321 0011123345889999988899999999999999999999999999999999999998532222122235899999
Q ss_pred HhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHH
Q 012613 329 EMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERRE 408 (460)
Q Consensus 329 ~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (460)
+|.++|+++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+|+.+...+++++
T Consensus 320 er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 320 KIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred HhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874699999977889999
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 409 IEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 409 l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
|+++|+++|.+++++.||++|+++++++++|+.+|||+.++++++++.++.+
T Consensus 400 v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 400 VERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 9999999998877789999999999999999999999999999999998764
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=9.3e-65 Score=495.49 Aligned_cols=435 Identities=29% Similarity=0.543 Sum_probs=342.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCeEEEEcCCCCCCCccCcc
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC----------N---YPHFEFHSISASLSETEASTE 80 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~----------~---~~gi~~~~~~~~~~~~~~~~~ 80 (460)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..... . ...++|..+|++++++.+...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 689999999999999999999999999999999999986543211 0 123677778888876644333
Q ss_pred cHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhh
Q 012613 81 DMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILRE 160 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 160 (460)
++..++..+.......+.++++.+.. .+. ++++||+|.+..|+..+|+++|||.++|++++++..+.+.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~-pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~--- 159 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAE---QGR-PVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH--- 159 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhc---cCC-CceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh---
Confidence 45455555555667777777777642 122 45999999999999999999999999999999998887766421
Q ss_pred cCCCCCCC---CcccccccCCCCCCCCCCCCCcCC--CCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcC
Q 012613 161 KCYLPIQD---SQLEARVIECPPLRVKDIPIFETG--DPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYF 235 (460)
Q Consensus 161 ~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~ 235 (460)
...+... ......+|+++.++.++++..... ......+.+.+..+....++.+++|||.+||+..++.+ +...
T Consensus 160 -~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l-~~~~ 237 (480)
T PLN02555 160 -GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYM-SKLC 237 (480)
T ss_pred -cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH-hhCC
Confidence 1112111 112234788877888888753321 12223344444445567788999999999999988888 5532
Q ss_pred CCCcccccccccCCCC--C--CCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcC
Q 012613 236 SIPVFPIGPFHKYFPA--S--SSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRP 311 (460)
Q Consensus 236 ~~pv~~vGpl~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
|++.|||+...... . +...+..++++.+||++++.++||||||||+...+.+++.+++.+++..+.+|||+++.
T Consensus 238 --~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~ 315 (480)
T PLN02555 238 --PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRP 315 (480)
T ss_pred --CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEec
Confidence 59999999753211 0 01112334569999999888899999999999999999999999999999999999874
Q ss_pred CcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhh
Q 012613 312 GLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYIS 391 (460)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 391 (460)
...........+|+++.++.++|+++++|+||.+||.|+++++||||||+||++||+.+|||+|++|+++||+.||++++
T Consensus 316 ~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~ 395 (480)
T PLN02555 316 PHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLV 395 (480)
T ss_pred CcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHH
Confidence 31100000134889999899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhheeeEecC-----C-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 392 HVWRLGLHLD-----G-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 392 ~~~G~G~~l~-----~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+.+|+|+.+. . .++.++|.++|+++|++++|+.+|+||++|+++.++|+.+|||+.++++++++.+.+
T Consensus 396 ~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 396 DVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 8679999993 3 689999999999999887789999999999999999999999999999999999853
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.4e-64 Score=491.61 Aligned_cols=426 Identities=31% Similarity=0.509 Sum_probs=332.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCeEEEEcCCCCCCCccCcccHHHHHHHH
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC----NYPHFEFHSISASLSETEASTEDMVAILIAL 89 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
+.||+++|+|++||++|++.||+.|+.+|+.||+++++.+..... ..++++++.+|++++++. ..++..+...+
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l~~a~ 83 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSIENSM 83 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHHHHHH
Confidence 569999999999999999999999999999999999986653221 113799999998776432 12333444444
Q ss_pred HHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCC-
Q 012613 90 NAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQD- 168 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~- 168 (460)
...+...+.++++.+.. . . ++++||+|.+..|+..+|+++|||++.|+++++.......+.+......+.+...
T Consensus 84 ~~~~~~~l~~ll~~l~~---~-~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 84 ENTMPPQLERLLHKLDE---D-G-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHhchHHHHHHHHHhcC---C-C-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 44567777777777643 1 1 4599999999999999999999999999999888777665544332222211111
Q ss_pred -C--cccccccCCCCCCCCCCCCCcCCC--CCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhc----CCCCc
Q 012613 169 -S--QLEARVIECPPLRVKDIPIFETGD--PKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQY----FSIPV 239 (460)
Q Consensus 169 -~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~----~~~pv 239 (460)
. .....+++++.++.++++...... .......+.+..+....++.+++|||.+||+..+..+ ... ..+++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~~~~~~~~~v 237 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNH-QASYNNGQNPQI 237 (448)
T ss_pred cccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHH-HhhhccccCCCE
Confidence 0 011246777777777777543221 2223444555556667788999999999999877766 432 22469
Q ss_pred ccccccccCCCCC--CCCcccccccchhhhccCCCCeEEEEEccCcc-cCCHHHHHHHHHHHhhCCCceEEEEcCCcccc
Q 012613 240 FPIGPFHKYFPAS--SSSLLSQDESCISWLDKHAPKSVIYVSFGSVV-NIDETEFLEIAWGLANSRVPFLWVVRPGLVRE 316 (460)
Q Consensus 240 ~~vGpl~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
+.|||++...... ....++.+.++.+||++++.+++|||||||+. ..+.++++.++.+|++++.+|||+++.+.
T Consensus 238 ~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~--- 314 (448)
T PLN02562 238 LQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW--- 314 (448)
T ss_pred EEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc---
Confidence 9999998654210 01123445567899999888899999999986 57889999999999999999999997532
Q ss_pred hhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhhee
Q 012613 317 AEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRL 396 (460)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 396 (460)
...+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+
T Consensus 315 ---~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~ 391 (448)
T PLN02562 315 ---REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKI 391 (448)
T ss_pred ---hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCc
Confidence 12488999999999999999999999999999999999999999999999999999999999999999999864699
Q ss_pred eEecCCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 397 GLHLDGNVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 397 G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
|+.+.. ++.++|.++|+++|+| +.||+||++++++++++ .+|||++++++++++.++
T Consensus 392 g~~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 392 GVRISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred eeEeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 988854 8999999999999998 89999999999999877 667999999999999874
No 4
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.3e-64 Score=489.37 Aligned_cols=431 Identities=30% Similarity=0.510 Sum_probs=330.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC----CCCCCeEEEEcCC----CCCCCccCcccHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLY-SKGFSITIIHTNLNPLNA----CNYPHFEFHSISA----SLSETEASTEDMV 83 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~----~~~~gi~~~~~~~----~~~~~~~~~~~~~ 83 (460)
.+.||+++|+|++||++|++.||+.|+ ++|+.|||++++.+.... ....+++++.+|. ++++.. .+..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~~ 80 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHVV 80 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccHH
Confidence 357999999999999999999999998 789999999999764321 1113688998884 443211 1222
Q ss_pred HHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCC
Q 012613 84 AILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCY 163 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
..+..........++++++++. . +|++||+|.+..|+..+|+++|||++.|++++++..+...+.+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~------~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEMH------Q-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC------C-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 2222233344455555555542 2 78999999999999999999999999999999988776555432211100
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhc--C----CC
Q 012613 164 LPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQY--F----SI 237 (460)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~--~----~~ 237 (460)
.+.........+++++.++..+++.............+.+.......++.+++||+.+||+..++.+ +.. + .+
T Consensus 154 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l-~~~~~~~~~~~~ 232 (481)
T PLN02992 154 EEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSL-QDPKLLGRVARV 232 (481)
T ss_pred cccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH-hhccccccccCC
Confidence 0100001123467777677777663221222233444555555667889999999999999999887 542 1 24
Q ss_pred CcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCccc--
Q 012613 238 PVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVR-- 315 (460)
Q Consensus 238 pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-- 315 (460)
|++.|||+...... . ..+.++.+||++++.++||||||||+..++.+++++++.+|+.++.+|||+++.....
T Consensus 233 ~v~~VGPl~~~~~~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~ 307 (481)
T PLN02992 233 PVYPIGPLCRPIQS---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSA 307 (481)
T ss_pred ceEEecCccCCcCC---C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 69999999753211 1 2344599999998889999999999999999999999999999999999999642100
Q ss_pred ------------chhhhccCchhHHHhhcCCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccc
Q 012613 316 ------------EAEWLELLPTGFVEMLDGRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGD 382 (460)
Q Consensus 316 ------------~~~~~~~l~~~~~~~~~~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 382 (460)
..+....+|++|.+|..+++.++ +|+||.+||+|+++++||||||+||++||+++|||+|++|+++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~D 387 (481)
T PLN02992 308 CSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAE 387 (481)
T ss_pred ccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccch
Confidence 00012348999999999877665 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhh-hhheeeEecCC---ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHH
Q 012613 383 QMVNARYIS-HVWRLGLHLDG---NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLK--PGGSSYQSLERLIDH 456 (460)
Q Consensus 383 Q~~na~~v~-~~~G~G~~l~~---~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 456 (460)
|+.||++++ + +|+|+.++. .++.++|+++|+++|.+++|+.+|++++++++++++|+. +|||+.++++++++.
T Consensus 388 Q~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~ 466 (481)
T PLN02992 388 QNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKE 466 (481)
T ss_pred hHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 999999995 7 799999965 489999999999999987788999999999999999994 599999999999999
Q ss_pred HhcC
Q 012613 457 ILSF 460 (460)
Q Consensus 457 ~~~~ 460 (460)
+.+|
T Consensus 467 ~~~~ 470 (481)
T PLN02992 467 CQRF 470 (481)
T ss_pred HHHH
Confidence 8764
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.1e-64 Score=484.55 Aligned_cols=420 Identities=28% Similarity=0.477 Sum_probs=333.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC--CCCCCeEEEEcCCCCCCC-ccCcccHHHHHHHHH
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNA--CNYPHFEFHSISASLSET-EASTEDMVAILIALN 90 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~--~~~~gi~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 90 (460)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+.... ...++++++.+|++++++ .....+...++..+.
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~~ 84 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQNFK 84 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHHHH
Confidence 46999999999999999999999999999999999998665332 122469999999999874 233334556666666
Q ss_pred HhcchhHHHHHHHhhccCCCCCCCe-eEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCC
Q 012613 91 AKCVVPFWDCLVKLTSISNVQEDSF-ACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDS 169 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~p-Dlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (460)
..+...+.++++.+.. . . +| |+||+|.+.+|+..+|+++|||++.|++++++......+ ..... .
T Consensus 85 ~~~~~~~~~~l~~~~~---~-~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~~--------~ 150 (449)
T PLN02173 85 TFGSKTVADIIRKHQS---T-D-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYINN--------G 150 (449)
T ss_pred HhhhHHHHHHHHHhhc---c-C-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhcc--------C
Confidence 6777888888877643 1 2 45 999999999999999999999999999988777654432 11110 0
Q ss_pred cccccccCCCCCCCCCCCCCcCC--CCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCccccccccc
Q 012613 170 QLEARVIECPPLRVKDIPIFETG--DPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHK 247 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~ 247 (460)
.....+++++.++.++++..... ........+.+..+....++.+++||+.+||+..++.+ +.. .|++.|||++.
T Consensus 151 ~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~--~~v~~VGPl~~ 227 (449)
T PLN02173 151 SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELL-SKV--CPVLTIGPTVP 227 (449)
T ss_pred CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHH-Hhc--CCeeEEcccCc
Confidence 11123566666777777753322 12223343444455677888999999999999988888 542 36999999974
Q ss_pred CC-------CCCCC--Ccc--cccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccc
Q 012613 248 YF-------PASSS--SLL--SQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVRE 316 (460)
Q Consensus 248 ~~-------~~~~~--~~~--~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
.. ..... ..+ +.++++.+||++++.+++|||||||+...+.+++.+++.+| .+.+|+|+++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~--- 302 (449)
T PLN02173 228 SMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE--- 302 (449)
T ss_pred hhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc---
Confidence 21 00000 001 22345999999988889999999999999999999999999 5788999998532
Q ss_pred hhhhccCchhHHHhh-cCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhhe
Q 012613 317 AEWLELLPTGFVEML-DGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWR 395 (460)
Q Consensus 317 ~~~~~~l~~~~~~~~-~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 395 (460)
...+|+++.++. ++|+++++|+||.+||+|+++++||||||+||++||+.+|||+|++|+++||+.||+++++.+|
T Consensus 303 ---~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g 379 (449)
T PLN02173 303 ---ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWK 379 (449)
T ss_pred ---hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhC
Confidence 134888998887 5889999999999999999999999999999999999999999999999999999999997568
Q ss_pred eeEecCC-----ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 396 LGLHLDG-----NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 396 ~G~~l~~-----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+|+.+.. .++.++|+++|+++|.+++++.+|++|++++++.++|+.+|||+.++++++++.+.
T Consensus 380 ~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 380 VGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred ceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9988853 26999999999999998778899999999999999999999999999999999874
No 6
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.6e-64 Score=493.98 Aligned_cols=430 Identities=31% Similarity=0.507 Sum_probs=333.3
Q ss_pred CCCCceEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCeEEEEcCCCCCCCccCcccHHHH
Q 012613 11 PRNGKRVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACN---YPHFEFHSISASLSETEASTEDMVAI 85 (460)
Q Consensus 11 ~~~~~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~---~~gi~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
+..+.||+++|+|++||++|++.||++|++| ||+||+++++.+...... ..+++|+.+|++++++.....+...+
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~~ 86 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPGF 86 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHHH
Confidence 4458899999999999999999999999999 999999999866533222 14799999998776654333445555
Q ss_pred HHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCC
Q 012613 86 LIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLP 165 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 165 (460)
+..+...+...+.++++.+.. ++|+||+|.++.|+..+|+++|||++.++++++.......+.+........|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~-------~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 87 LEAVMTKMEAPFEQLLDRLEP-------PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred HHHHHHHhHHHHHHHHHhcCC-------CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 555554556666666665533 7899999999999999999999999999999987777666544322211112
Q ss_pred CCCC----cccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCccc
Q 012613 166 IQDS----QLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFP 241 (460)
Q Consensus 166 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~ 241 (460)
.... .....++++..++..+++...........+.+.........++.+++||+.+||+..++.+ +..++.+++.
T Consensus 160 ~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l-~~~~~~~~~~ 238 (459)
T PLN02448 160 VELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDAL-KSKFPFPVYP 238 (459)
T ss_pred CccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHH-HhhcCCceEE
Confidence 2110 1011356665666666664332222233344444455566778999999999999988888 7766668999
Q ss_pred ccccccCCCCC---CCCcc-cccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccch
Q 012613 242 IGPFHKYFPAS---SSSLL-SQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREA 317 (460)
Q Consensus 242 vGpl~~~~~~~---~~~~~-~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 317 (460)
|||+....... ...+. +.+.++.+|++.++.+++|||||||+.....+++++++++|+..+.+|||+++...
T Consensus 239 iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~---- 314 (459)
T PLN02448 239 IGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA---- 314 (459)
T ss_pred ecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch----
Confidence 99997532110 00011 12235889999988889999999999888889999999999999999999876421
Q ss_pred hhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheee
Q 012613 318 EWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLG 397 (460)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 397 (460)
.++.++.++|+++++|+||.+||+|+++++||||||+||++||+.+|||+|++|+++||+.||+++++.||+|
T Consensus 315 -------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G 387 (459)
T PLN02448 315 -------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIG 387 (459)
T ss_pred -------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCce
Confidence 2344455568899999999999999999999999999999999999999999999999999999999756888
Q ss_pred EecCC------ccCHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 398 LHLDG------NVERREIEIAVRRVMIE--TEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 398 ~~l~~------~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+.+.. .+++++|+++|+++|.+ ++|..||+||+++++++++|+.+|||+.++++++++.+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 388 WRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 88742 47999999999999986 3478999999999999999999999999999999999864
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=8.9e-64 Score=486.83 Aligned_cols=432 Identities=24% Similarity=0.359 Sum_probs=324.2
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CCCCeEEEEcC----CCCCCCccCcccH
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC-----NYPHFEFHSIS----ASLSETEASTEDM 82 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~-----~~~gi~~~~~~----~~~~~~~~~~~~~ 82 (460)
+.+.||+++|+|++||++|++.||+.|+.||+.|||++++.+..... ...+++++.+| ++++++.+...+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~ 83 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDV 83 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccccc
Confidence 45679999999999999999999999999999999999997652221 11368999998 6787654433333
Q ss_pred H----HHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhh
Q 012613 83 V----AILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPIL 158 (460)
Q Consensus 83 ~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~ 158 (460)
. ..+....+. +.+.++.+.+ + . ++++||+|.+..|+..+|+++|||++.|+++++...+...+....
T Consensus 84 ~~~~~~~~~~~~~~----~~~~~~~~l~--~--~-~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 84 PYTKQQLLKKAFDL----LEPPLTTFLE--T--S-KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred chhhHHHHHHHHHH----hHHHHHHHHH--h--C-CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 2 122222333 3444444433 1 2 689999999999999999999999999999998888775532211
Q ss_pred hhcCCCCCCCCcccccccCCC------CCCCCCCCCCcCCC--CCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHh
Q 012613 159 REKCYLPIQDSQLEARVIECP------PLRVKDIPIFETGD--PKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTI 230 (460)
Q Consensus 159 ~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~ 230 (460)
......+.....+ ..++++. .++..+++...... .......+.+......+++.+++|||.+||+..++.+
T Consensus 155 ~~~~~~~~~~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l 233 (472)
T PLN02670 155 MEGGDLRSTAEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLL 233 (472)
T ss_pred hhcccCCCccccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHH
Confidence 1111111111111 1123221 13334544322111 1112233333334456788999999999999999998
Q ss_pred hhhcCCCCcccccccccCCCCCCCCc-c--cccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEE
Q 012613 231 HHQYFSIPVFPIGPFHKYFPASSSSL-L--SQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLW 307 (460)
Q Consensus 231 ~~~~~~~pv~~vGpl~~~~~~~~~~~-~--~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 307 (460)
+..+.+|++.|||+........... . ..+.++.+||+++++++||||||||+..++.+++.+++.+|+.++.+|||
T Consensus 234 -~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 234 -SDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred -HHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 7755568999999975311100000 0 11346899999988899999999999999999999999999999999999
Q ss_pred EEcCCcccchhhhccCchhHHHhhcCCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhh
Q 012613 308 VVRPGLVREAEWLELLPTGFVEMLDGRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVN 386 (460)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 386 (460)
+++.......+....+|++|.++..+++.++ +|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.|
T Consensus 313 v~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (472)
T PLN02670 313 VLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLN 392 (472)
T ss_pred EEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHH
Confidence 9985321111112358999999999888875 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhheeeEecCC-----ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 387 ARYISHVWRLGLHLDG-----NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 387 a~~v~~~~G~G~~l~~-----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
|+++++ +|+|+.++. .++.++|+++|+++|.+++|..||+||+++++.++ +.++..++++++++++.+
T Consensus 393 a~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 393 TRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHHH
Confidence 999999 799999964 38999999999999998777899999999999999 889999999999999875
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-63 Score=481.99 Aligned_cols=440 Identities=26% Similarity=0.415 Sum_probs=331.8
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-----CC----CCCCCeEEEEcCCCCC-CCccCc
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKG--FSITIIHTNLNPL-----NA----CNYPHFEFHSISASLS-ETEAST 79 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~V~~~~~~~~~~-----~~----~~~~gi~~~~~~~~~~-~~~~~~ 79 (460)
|++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+.. .. ...++++|+.+|+... ......
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 4567999999999999999999999999998 9999999986541 01 1113699999995432 110112
Q ss_pred ccHHHHHHHHHHhcchhHHHHHHHhhccC-CCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhh
Q 012613 80 EDMVAILIALNAKCVVPFWDCLVKLTSIS-NVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPIL 158 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~ 158 (460)
.+....+..+...+...+.+.++++.... ..+. ++++||+|.++.|+..+|+++|||++.|+++++.......+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGV-KVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCC-CeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 34444444444555444444444443200 0112 349999999999999999999999999999999888877664432
Q ss_pred hhc-CCCCCCCCcccccccCC-CCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhh-cC
Q 012613 159 REK-CYLPIQDSQLEARVIEC-PPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQ-YF 235 (460)
Q Consensus 159 ~~~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~-~~ 235 (460)
... ...+.+.......+|++ +.++..+++..... ... ...+.+......+++.+++||+.+||++.++.+ +. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~-~~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~-~~~~~ 236 (468)
T PLN02207 160 HSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFV-EDG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHF-LDEQN 236 (468)
T ss_pred cccccccCcCCCCCeEECCCCCCCCChHHCcchhcC-Ccc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH-HhccC
Confidence 111 11111111112346777 46788887753321 111 333444455677889999999999999988877 54 22
Q ss_pred CCCcccccccccCCCCCCC-CcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcc
Q 012613 236 SIPVFPIGPFHKYFPASSS-SLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLV 314 (460)
Q Consensus 236 ~~pv~~vGpl~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (460)
.++++.|||++........ .....++++.+||++++++++|||||||....+.+++++++.+|+.++++|||+++....
T Consensus 237 ~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~ 316 (468)
T PLN02207 237 YPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV 316 (468)
T ss_pred CCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc
Confidence 2469999999864322000 001123469999999888899999999999999999999999999999999999985321
Q ss_pred cchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhh
Q 012613 315 REAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVW 394 (460)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~ 394 (460)
.. .+.+|++|.+|.++|+.+++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+
T Consensus 317 ~~---~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~ 393 (468)
T PLN02207 317 TN---DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKEL 393 (468)
T ss_pred cc---cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHh
Confidence 11 234899999999999999999999999999999999999999999999999999999999999999999877647
Q ss_pred eeeEecC------C--ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 395 RLGLHLD------G--NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 395 G~G~~l~------~--~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
|+|+.+. . .++.++|+++|+++|++ +++.||+||+++++.+++|+.+|||++++++++++.+..
T Consensus 394 gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 394 KLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred CceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 9998662 1 35999999999999973 248999999999999999999999999999999998863
No 9
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.2e-63 Score=483.11 Aligned_cols=424 Identities=30% Similarity=0.532 Sum_probs=325.8
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCC----CCCCeEEEEcCCCCCCCccCcccHHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASV--LYSKGFSITIIHTNLNPLNAC----NYPHFEFHSISASLSETEASTEDMVAIL 86 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~--L~~rGh~V~~~~~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
.+.||+++|+|++||++|++.||++ |++||+.|||++++.+..... ....+++..+|++++++.. .+...++
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~~~~~ 84 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAPETLL 84 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCHHHHH
Confidence 4689999999999999999999999 569999999999996653222 1246888888888887642 2333444
Q ss_pred HHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCC
Q 012613 87 IALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPI 166 (460)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 166 (460)
..+.+.+...+.+.++. . +||+||+|.+..|+..+|+++|||.+.|++.+++.+....+..... ...+.
T Consensus 85 ~~~~~~~~~~l~~~l~~--------~-~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~~~ 153 (456)
T PLN02210 85 KSLNKVGAKNLSKIIEE--------K-RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSFPD 153 (456)
T ss_pred HHHHHhhhHHHHHHHhc--------C-CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCCCc
Confidence 44444444334333322 3 7899999999999999999999999999999998887766532211 11111
Q ss_pred CCC-cccccccCCCCCCCCCCCCCcCCCCCc-HHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccc
Q 012613 167 QDS-QLEARVIECPPLRVKDIPIFETGDPKN-VDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGP 244 (460)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGp 244 (460)
... .-...+|+++.++.++++......... +.............++.+++||+.+||+..++.+ +. . +++++|||
T Consensus 154 ~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l-~~-~-~~v~~VGP 230 (456)
T PLN02210 154 LEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESM-AD-L-KPVIPIGP 230 (456)
T ss_pred ccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHH-hh-c-CCEEEEcc
Confidence 110 011236666667777776433222221 2223334444556678999999999999988887 55 2 57999999
Q ss_pred cccCC----CC----CCC--CcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcc
Q 012613 245 FHKYF----PA----SSS--SLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLV 314 (460)
Q Consensus 245 l~~~~----~~----~~~--~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (460)
++... .. .+. ..+..+.++.+|+++++++++|||||||....+.+++++++.+|+.++.+|||+++....
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~ 310 (456)
T PLN02210 231 LVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK 310 (456)
T ss_pred cCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence 97421 11 000 012345568999999888999999999999889999999999999999999999975321
Q ss_pred cchhhhccCchhHHHhh-cCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhh
Q 012613 315 REAEWLELLPTGFVEML-DGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHV 393 (460)
Q Consensus 315 ~~~~~~~~l~~~~~~~~-~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 393 (460)
...++.+.++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.
T Consensus 311 ------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~ 384 (456)
T PLN02210 311 ------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDV 384 (456)
T ss_pred ------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHH
Confidence 11345566666 37888999999999999999999999999999999999999999999999999999999874
Q ss_pred heeeEecCC-----ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 394 WRLGLHLDG-----NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 394 ~G~G~~l~~-----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+|+|+.+.. .+++++|+++|+++|.+++|+.||+||++|++.+++|+.+|||+.++++++++.+.
T Consensus 385 ~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 385 FGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred hCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 699999853 48999999999999998778899999999999999999999999999999999874
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-62 Score=483.33 Aligned_cols=436 Identities=29% Similarity=0.426 Sum_probs=334.0
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCCCCC----C----C---CC-CCCeEEEEcCCCCCCC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKG----FSITIIHTNLNPL----N----A---CN-YPHFEFHSISASLSET 75 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rG----h~V~~~~~~~~~~----~----~---~~-~~gi~~~~~~~~~~~~ 75 (460)
|.|.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.. . . .. ..+++++.+|++.++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 3577999999999999999999999999997 7899999875421 0 0 01 1259999999764322
Q ss_pred ccCcccHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhc
Q 012613 76 EASTEDMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAY 155 (460)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~ 155 (460)
. ..+...++..+...+...++++++.+. . ++++||+|.+.+|+..+|+++|||++.|++++++..+.+.+.
T Consensus 81 ~--~e~~~~~~~~~~~~~~~~l~~~L~~l~------~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 151 (480)
T PLN00164 81 D--AAGVEEFISRYIQLHAPHVRAAIAGLS------C-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRL 151 (480)
T ss_pred c--cccHHHHHHHHHHhhhHHHHHHHHhcC------C-CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhh
Confidence 1 112334444455566666666665542 2 579999999999999999999999999999999998887765
Q ss_pred hhhhhcCCCCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcC
Q 012613 156 PILREKCYLPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYF 235 (460)
Q Consensus 156 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~ 235 (460)
+......-.+.........+|+++.++..+++.............+....+...+++.+++|||.+||+..++.+ +...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~~ 230 (480)
T PLN00164 152 PALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAI-ADGR 230 (480)
T ss_pred hhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHH-Hhcc
Confidence 432111100111101112367777778888875332222222333444445567788999999999999998888 6532
Q ss_pred ------CCCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEE
Q 012613 236 ------SIPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVV 309 (460)
Q Consensus 236 ------~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (460)
.++++.|||+...... ....+.++++.+||++++.++||||||||+...+.+++.+++.+|+.++.+|||++
T Consensus 231 ~~~~~~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~ 308 (480)
T PLN00164 231 CTPGRPAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVL 308 (480)
T ss_pred ccccCCCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1369999999843211 01123455699999998888999999999988899999999999999999999999
Q ss_pred cCCcccc------hhhhccCchhHHHhhcCCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccc
Q 012613 310 RPGLVRE------AEWLELLPTGFVEMLDGRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGD 382 (460)
Q Consensus 310 ~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 382 (460)
+.....+ .+....+|+++.++..+++.++ +|+||.+||+|+++++||||||+||++||+.+|||+|++|+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~D 388 (480)
T PLN00164 309 RGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAE 388 (480)
T ss_pred cCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcccc
Confidence 8532100 0111248899999998888877 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhhheeeEecCC------ccCHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 012613 383 QMVNARYISHVWRLGLHLDG------NVERREIEIAVRRVMIET--EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLI 454 (460)
Q Consensus 383 Q~~na~~v~~~~G~G~~l~~------~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (460)
|+.||+++++.+|+|+.+.. .+++++|.++|+++|.++ +++.+|++|+++++++++|+.+|||+.+++++++
T Consensus 389 Q~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v 468 (480)
T PLN00164 389 QHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLA 468 (480)
T ss_pred chhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999887543799999852 369999999999999874 4789999999999999999999999999999999
Q ss_pred HHHhc
Q 012613 455 DHILS 459 (460)
Q Consensus 455 ~~~~~ 459 (460)
+.+.+
T Consensus 469 ~~~~~ 473 (480)
T PLN00164 469 REIRH 473 (480)
T ss_pred HHHHh
Confidence 98853
No 11
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1e-62 Score=482.91 Aligned_cols=435 Identities=26% Similarity=0.405 Sum_probs=325.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCeEEEEcC----CCCCCCccCcccHH-
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC----NYPHFEFHSIS----ASLSETEASTEDMV- 83 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~----~~~gi~~~~~~----~~~~~~~~~~~~~~- 83 (460)
.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..... ...+++++.+| .+++++.+...+..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~ 87 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPP 87 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcch
Confidence 4799999999999999999999999999999999999997753221 12357777655 25665554333321
Q ss_pred HHHHHHH---HhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhh
Q 012613 84 AILIALN---AKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILRE 160 (460)
Q Consensus 84 ~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.....+. ......+.+.++.. +. +|++||+|.+.+|+..+|+++|||++.|++++++.++.+.++....+
T Consensus 88 ~~~~~~~~a~~~~~~~~~~~l~~~------~~-~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 88 SGFPLMIHALGELYAPLLSWFRSH------PS-PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHhC------CC-CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 1121222 22333333333332 23 68999999999999999999999999999999999888776432211
Q ss_pred cCCCCCCC-Ccc-cccccCCCCCCCCCCCCCcCC--CCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCC
Q 012613 161 KCYLPIQD-SQL-EARVIECPPLRVKDIPIFETG--DPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFS 236 (460)
Q Consensus 161 ~~~~p~~~-~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~ 236 (460)
....+... ... ...+|+++.++.++++..... ........+.+.......++.+++||+.+||+..++.+ +..+.
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~~~ 239 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHL-KKELG 239 (477)
T ss_pred ccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHH-HhhcC
Confidence 10001100 111 123577777777777643311 12223333434444455678899999999999999998 77654
Q ss_pred -CCcccccccccCCCCC------CCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEE
Q 012613 237 -IPVFPIGPFHKYFPAS------SSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVV 309 (460)
Q Consensus 237 -~pv~~vGpl~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (460)
+|++.|||+....... +......++++.+||+++++++||||||||+...+.+++.+++.+|+.++.+|||++
T Consensus 240 ~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~ 319 (477)
T PLN02863 240 HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCV 319 (477)
T ss_pred CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5799999997532110 000011234699999998889999999999998899999999999999999999999
Q ss_pred cCCcccchhhhccCchhHHHhhcCCce-eeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHH
Q 012613 310 RPGLVREAEWLELLPTGFVEMLDGRGH-IVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNAR 388 (460)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 388 (460)
+...... .....+|+++.++..++.. +.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+
T Consensus 320 ~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 398 (477)
T PLN02863 320 KEPVNEE-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNAS 398 (477)
T ss_pred CCCcccc-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHH
Confidence 8532110 1123589999888775554 5599999999999999999999999999999999999999999999999999
Q ss_pred HhhhhheeeEecCC----ccCHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 389 YISHVWRLGLHLDG----NVERREIEIAVRRVMI-ETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 389 ~v~~~~G~G~~l~~----~~~~~~l~~ai~~vl~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
++++.+|+|+++.. ..+.+++.++|+++|. + +.||+||+++++.+++|+.+|||+.++++++++.+.+
T Consensus 399 ~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~---~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 399 LLVDELKVAVRVCEGADTVPDSDELARVFMESVSEN---QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred HHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 97654899999942 3689999999999994 4 8999999999999999999999999999999999875
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.2e-62 Score=475.67 Aligned_cols=426 Identities=29% Similarity=0.447 Sum_probs=332.9
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCCC-CC-C---CCCCCeEEEEcCCCCCCCcc-CcccHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYS-KGFSITIIHTNLNP-LN-A---CNYPHFEFHSISASLSETEA-STEDMVAI 85 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~-rGh~V~~~~~~~~~-~~-~---~~~~gi~~~~~~~~~~~~~~-~~~~~~~~ 85 (460)
.+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+. .. . ....+++++.++++++++.. ...+....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 4569999999999999999999999996 69999999998542 11 1 11136999999988887643 23455556
Q ss_pred HHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCC
Q 012613 86 LIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLP 165 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 165 (460)
+..+...+.+.+.++++.+.. .+. ++++||+|.+.+|+..+|+++|||++.|++++++..+..++..... +
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~---~~~-pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~-----~ 152 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLN---GDS-PVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN-----N 152 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhc---cCC-CceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC-----C
Confidence 666777888889888888743 122 5699999999999999999999999999999999888766533110 0
Q ss_pred CCCCcccccccCCCCCCCCCCCCCcCC--CCCcHHHHHHHHHhhhc--cccEEEEcCchhccHHHHHHhhhhcCCCCccc
Q 012613 166 IQDSQLEARVIECPPLRVKDIPIFETG--DPKNVDKVISAMVSLIK--ASSGIIWNSYRELEQVELTTIHHQYFSIPVFP 241 (460)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~ 241 (460)
....+|+++.++.++++..... ......+.+....+... .++.+++|||.+||+..++.+ +. .|++.
T Consensus 153 -----~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l-~~---~~v~~ 223 (455)
T PLN02152 153 -----SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAI-PN---IEMVA 223 (455)
T ss_pred -----CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhh-hc---CCEEE
Confidence 1123666666777777653321 12222344434444332 246899999999999988888 54 37999
Q ss_pred ccccccCCC---CC-CC-Cc-ccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCccc
Q 012613 242 IGPFHKYFP---AS-SS-SL-LSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVR 315 (460)
Q Consensus 242 vGpl~~~~~---~~-~~-~~-~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 315 (460)
|||+..... .. +. .. .+.+.++.+||++++.++||||||||+..++.+++++++.+|+.++.+|||+++.....
T Consensus 224 VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~ 303 (455)
T PLN02152 224 VGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNR 303 (455)
T ss_pred EcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 999975321 10 00 01 12244699999998888999999999999999999999999999999999999853110
Q ss_pred -----chh-hhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHH
Q 012613 316 -----EAE-WLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARY 389 (460)
Q Consensus 316 -----~~~-~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 389 (460)
+.+ ....+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||++
T Consensus 304 ~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 383 (455)
T PLN02152 304 EAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKL 383 (455)
T ss_pred ccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHH
Confidence 000 01135789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhheeeEecC--C--ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 390 ISHVWRLGLHLD--G--NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 390 v~~~~G~G~~l~--~--~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
+++.+|+|+.+. . .++.++|+++|+++|+++ +..||+||+++++..++|+.+||+++++++++++.+
T Consensus 384 ~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 384 LEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 998456676663 2 369999999999999853 357999999999999999999999999999999976
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3e-62 Score=473.57 Aligned_cols=433 Identities=24% Similarity=0.413 Sum_probs=330.3
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC------CC---CCCeEEEEcCCCCCCCc-cCcc
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSK-GFSITIIHTNLNPLNA------CN---YPHFEFHSISASLSETE-ASTE 80 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~V~~~~~~~~~~~~------~~---~~gi~~~~~~~~~~~~~-~~~~ 80 (460)
|++.||+++|+|++||++|++.||+.|+.+ |..|||++++.+.... .. ..+++++.+|....++. ....
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 346799999999999999999999999987 9999999877544211 11 12589999985433221 1111
Q ss_pred cHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCC-eEEEeCccHHHHHHHHhchhhh
Q 012613 81 DMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLP-TIILQTSSVSAYLAFAAYPILR 159 (460)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP-~v~~~~~~~~~~~~~~~~~~~~ 159 (460)
+....+..........+.++++.+.. ++++||+|.+++|+..+|+++||| .+++++++++....+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~~-------~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMKR-------KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcCC-------CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 33333334445666677777766533 689999999999999999999999 5778888877766665544321
Q ss_pred hcCCCCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcC----
Q 012613 160 EKCYLPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYF---- 235 (460)
Q Consensus 160 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~---- 235 (460)
...-...........+|+++.++..+++.............+....+....++.+++|||.+||+..++.+ +..+
T Consensus 154 ~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l-~~~~~~~~ 232 (470)
T PLN03015 154 TVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAAL-REDMELNR 232 (470)
T ss_pred cccccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH-Hhhccccc
Confidence 11000000001113478888888888874332222222333334444577899999999999999999888 6642
Q ss_pred --CCCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCc
Q 012613 236 --SIPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGL 313 (460)
Q Consensus 236 --~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (460)
.+|++.|||+...... ...+.++.+|||+++.++||||||||...++.+++++++.+|+.++.+|||+++...
T Consensus 233 ~~~~~v~~VGPl~~~~~~-----~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~ 307 (470)
T PLN03015 233 VMKVPVYPIGPIVRTNVH-----VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPA 307 (470)
T ss_pred ccCCceEEecCCCCCccc-----ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCc
Confidence 2469999999843211 112335999999988899999999999999999999999999999999999997421
Q ss_pred c-------cchhhhccCchhHHHhhcCCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhh
Q 012613 314 V-------REAEWLELLPTGFVEMLDGRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMV 385 (460)
Q Consensus 314 ~-------~~~~~~~~l~~~~~~~~~~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~ 385 (460)
. +..+....+|++|.+|..+++.++ +|+||.+||+|+++++||||||+||++||+.+|||+|++|+++||+.
T Consensus 308 ~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~ 387 (470)
T PLN03015 308 SYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWM 387 (470)
T ss_pred cccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHH
Confidence 1 000112358999999999998765 99999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhheeeEecC----C-ccCHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 386 NARYISHVWRLGLHLD----G-NVERREIEIAVRRVMIE--TEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 386 na~~v~~~~G~G~~l~----~-~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
||+++++.+|+|+.+. . .++.++|+++|+++|.+ ++|+.+|+||++++++.++|+.+|||+.++++++++.+
T Consensus 388 na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 388 NATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 9999954489999995 2 58999999999999963 55899999999999999999999999999999999876
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-62 Score=476.70 Aligned_cols=427 Identities=29% Similarity=0.474 Sum_probs=323.5
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCCCCC-------CC-CCCCCeEEEEcCCCCCCCc--c
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKG--FSITI--IHTNLNPL-------NA-CNYPHFEFHSISASLSETE--A 77 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~V~~--~~~~~~~~-------~~-~~~~gi~~~~~~~~~~~~~--~ 77 (460)
|.+.||+++|+|++||++|++.||+.|+.+| +.||+ +.++.+.. .. ...++++++.+|++.+... .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 3578999999999999999999999999998 55666 44443221 10 1124699999997764222 2
Q ss_pred CcccHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchh
Q 012613 78 STEDMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPI 157 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~ 157 (460)
...+...++......+...+.+.++++.. +. ++++||+|.+.+|+..+|+++|||++.|++++++..+...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~-pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~ 155 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR----NF-NVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPT 155 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC----CC-CceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHh
Confidence 12233334444455667777777777632 12 46999999999999999999999999999999998888776443
Q ss_pred hhhcCCCCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCC-
Q 012613 158 LREKCYLPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFS- 236 (460)
Q Consensus 158 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~- 236 (460)
.......+.........+|+++.++..+++...........+.+.........++.+++|||.+||+..++.+ +..+.
T Consensus 156 ~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l-~~~~~~ 234 (451)
T PLN03004 156 IDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAI-TEELCF 234 (451)
T ss_pred ccccccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHH-HhcCCC
Confidence 2111000000011113467777788888875442232233444555555667788999999999999999988 76533
Q ss_pred CCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccc
Q 012613 237 IPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVRE 316 (460)
Q Consensus 237 ~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
+|++.|||+....... ......+.++.+||+++++++||||||||+..++.+++++++.+|+.++.+|||+++......
T Consensus 235 ~~v~~vGPl~~~~~~~-~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~ 313 (451)
T PLN03004 235 RNIYPIGPLIVNGRIE-DRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELE 313 (451)
T ss_pred CCEEEEeeeccCcccc-ccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccc
Confidence 4799999997532210 011112345999999988899999999999989999999999999999999999998531100
Q ss_pred h--hhhc-cCchhHHHhhcCCc-eeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhh
Q 012613 317 A--EWLE-LLPTGFVEMLDGRG-HIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISH 392 (460)
Q Consensus 317 ~--~~~~-~l~~~~~~~~~~~~-~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 392 (460)
. .... .+|++|.+|..++. .+.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++
T Consensus 314 ~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~ 393 (451)
T PLN03004 314 KTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVD 393 (451)
T ss_pred ccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHH
Confidence 0 0012 38999999998655 456999999999999999999999999999999999999999999999999999985
Q ss_pred hheeeEecCC----ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHH
Q 012613 393 VWRLGLHLDG----NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQ 448 (460)
Q Consensus 393 ~~G~G~~l~~----~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 448 (460)
++|+|+.++. .+++++|+++|+++|++ +.||++|+++++..++|+.+|||+++
T Consensus 394 ~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 394 EIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4799999964 47999999999999998 89999999999999999999999875
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3e-62 Score=478.42 Aligned_cols=438 Identities=28% Similarity=0.458 Sum_probs=321.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC------CC--CCeEEEEcC-----CCCCCCccCcc
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC------NY--PHFEFHSIS-----ASLSETEASTE 80 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~------~~--~gi~~~~~~-----~~~~~~~~~~~ 80 (460)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..... .. ..++|+.+| ++++++.+...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 579999999999999999999999999999999999987652211 10 138999998 68877654332
Q ss_pred cHH--HHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhh
Q 012613 81 DMV--AILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPIL 158 (460)
Q Consensus 81 ~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~ 158 (460)
++. .++..+..... .+.+.++++.. +.+. +||+||+|.+.+|+..+|+.+|||++.|++++++.......+...
T Consensus 88 ~~~~~~~~~~~~~~~~-~l~~~l~~lL~--~~~~-pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 88 TLPSRDLLRKFYDAVD-KLQQPLERFLE--QAKP-PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred cCCcHHHHHHHHHHHH-HhHHHHHHHHH--hcCC-CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 211 23322222221 23333333333 1123 689999999999999999999999999999988877654332111
Q ss_pred hhcCCCCCCCCcccccccCCC---CCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcC
Q 012613 159 REKCYLPIQDSQLEARVIECP---PLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYF 235 (460)
Q Consensus 159 ~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~ 235 (460)
.+. .+.........+++++ .++..+++...... ................++.+++|||.+||+..++.+ +..+
T Consensus 164 ~~~--~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l-~~~~ 239 (491)
T PLN02534 164 NAH--LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAY-EKAI 239 (491)
T ss_pred ccc--ccCCCCCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHH-Hhhc
Confidence 111 1111111122355654 25555555322111 112222222222234567899999999999999988 7766
Q ss_pred CCCcccccccccCCCCCC-----CCccc-ccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEE
Q 012613 236 SIPVFPIGPFHKYFPASS-----SSLLS-QDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVV 309 (460)
Q Consensus 236 ~~pv~~vGpl~~~~~~~~-----~~~~~-~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 309 (460)
+++++.|||+........ ..... .++++.+||+++++++||||||||......+++.+++.+|+.++.+|||++
T Consensus 240 ~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~ 319 (491)
T PLN02534 240 KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVI 319 (491)
T ss_pred CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 667999999975321100 00011 234589999999889999999999999999999999999999999999999
Q ss_pred cCCcccchhhhccCchhHHHhhc-CCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHH
Q 012613 310 RPGLVREAEWLELLPTGFVEMLD-GRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNAR 388 (460)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 388 (460)
+............+|++|.++.. .++++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+
T Consensus 320 r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~ 399 (491)
T PLN02534 320 KTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEK 399 (491)
T ss_pred ecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHH
Confidence 84321000001136899988865 45556699999999999999999999999999999999999999999999999999
Q ss_pred HhhhhheeeEecC-------------C-ccCHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 012613 389 YISHVWRLGLHLD-------------G-NVERREIEIAVRRVMI--ETEGQEMRERILYSKEKAHLCLKPGGSSYQSLER 452 (460)
Q Consensus 389 ~v~~~~G~G~~l~-------------~-~~~~~~l~~ai~~vl~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 452 (460)
++++.||+|+++. . -+++++|+++|+++|. +++|+.+|+||++|++.+++|+.+|||+.+++++
T Consensus 400 ~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~ 479 (491)
T PLN02534 400 LIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSI 479 (491)
T ss_pred HHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9987689999873 1 2789999999999997 4557899999999999999999999999999999
Q ss_pred HHHHHhc
Q 012613 453 LIDHILS 459 (460)
Q Consensus 453 ~~~~~~~ 459 (460)
|++.+.+
T Consensus 480 fv~~i~~ 486 (491)
T PLN02534 480 LIQDVLK 486 (491)
T ss_pred HHHHHHH
Confidence 9999864
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.8e-62 Score=481.85 Aligned_cols=430 Identities=29% Similarity=0.451 Sum_probs=327.6
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C---CC--CCCeEEEEcCCCCCCCccCc
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKG--FSITIIHTNLNPLN-------A---CN--YPHFEFHSISASLSETEAST 79 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~V~~~~~~~~~~~-------~---~~--~~gi~~~~~~~~~~~~~~~~ 79 (460)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+... . .. .++++++.+|++.+.....
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~- 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTED- 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccc-
Confidence 78999999999999999999999999998 88999999866431 0 00 2369999999766422111
Q ss_pred ccHHHHHHHHHHhcchhHHHHHHHhhccCC----CCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhc
Q 012613 80 EDMVAILIALNAKCVVPFWDCLVKLTSISN----VQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAY 155 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~----~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~ 155 (460)
. .+..+...+...+.+.++++.. + .+. +.++||+|.++.|+..+|+++|||++.|+++++...+...+.
T Consensus 81 ~----~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~-pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~ 153 (481)
T PLN02554 81 P----TFQSYIDNQKPKVRDAVAKLVD--DSSTPSSP-RLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHV 153 (481)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHHh--hhccCCCC-CeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhh
Confidence 1 2222334455556666666543 1 111 348999999999999999999999999999999999887775
Q ss_pred hhhhhcCCCCC---CCCcccccccCCC-CCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhh
Q 012613 156 PILREKCYLPI---QDSQLEARVIECP-PLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIH 231 (460)
Q Consensus 156 ~~~~~~~~~p~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 231 (460)
+......-.+. ........+|++. .++..+++..... ......+......+..++.+++|++.+||......+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l- 230 (481)
T PLN02554 154 QMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF- 230 (481)
T ss_pred hhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH-
Confidence 44321110111 1111122367763 5666676643311 123344444455677889999999999999887777
Q ss_pred hhc--CCCCcccccccc-cCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEE
Q 012613 232 HQY--FSIPVFPIGPFH-KYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWV 308 (460)
Q Consensus 232 ~~~--~~~pv~~vGpl~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (460)
... ..++++.|||+. ....... ...+.+.++.+|+++++.++||||||||+...+.+++++++.+|+.++.+|||+
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~~~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~ 309 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSGDD-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWS 309 (481)
T ss_pred HhcccCCCCEEEeCCCccccccccc-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 542 224699999994 3322100 001233459999999888899999999998889999999999999999999999
Q ss_pred EcCCcc------cc--hhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccc
Q 012613 309 VRPGLV------RE--AEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYL 380 (460)
Q Consensus 309 ~~~~~~------~~--~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~ 380 (460)
+++... .+ .+....+|++|.+|.++|+++++|+||.+||.|+++++||||||+||++||+++|||+|++|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 310 LRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred EcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 975311 00 0001236999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhH-HHhhhhheeeEecC------------CccCHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhhcCCCCh
Q 012613 381 GDQMVNA-RYISHVWRLGLHLD------------GNVERREIEIAVRRVMI-ETEGQEMRERILYSKEKAHLCLKPGGSS 446 (460)
Q Consensus 381 ~DQ~~na-~~v~~~~G~G~~l~------------~~~~~~~l~~ai~~vl~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 446 (460)
+||+.|| .++++ +|+|+.++ ..+++++|+++|+++|+ | +.||+||+++++.+++|+.+|||+
T Consensus 390 ~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss 465 (481)
T PLN02554 390 AEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSS 465 (481)
T ss_pred ccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChH
Confidence 9999999 55777 79999985 15899999999999997 6 799999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 012613 447 YQSLERLIDHILS 459 (460)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (460)
.++++++++.+.+
T Consensus 466 ~~~l~~lv~~~~~ 478 (481)
T PLN02554 466 HTALKKFIQDVTK 478 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.1e-61 Score=480.13 Aligned_cols=436 Identities=28% Similarity=0.465 Sum_probs=320.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CeEEEEcC---CCCCCCcc
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACN--------YP----HFEFHSIS---ASLSETEA 77 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~--------~~----gi~~~~~~---~~~~~~~~ 77 (460)
.+.||+++|+|++||++|++.||++|++|||+|||++++.+...... .+ .+.+.++| ++++++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 36799999999999999999999999999999999999866522110 01 34556666 46766543
Q ss_pred Ccc--------cHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHH
Q 012613 78 STE--------DMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAY 149 (460)
Q Consensus 78 ~~~--------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~ 149 (460)
... ....+...+. .....+.+.++++.+ + . +||+||+|.++.|+..+|+++|||++.|++++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~--~--~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLE--T--T-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHh--c--C-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 221 1223333333 333445565666544 1 3 789999999999999999999999999999988776
Q ss_pred HHHHhchhhhhcCCCCCCCCcccccccCCC---CCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHH
Q 012613 150 LAFAAYPILREKCYLPIQDSQLEARVIECP---PLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVE 226 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~ 226 (460)
..........+....+.... ...+++++ .++..+++.. .....+...+....+...+++.+++|++.+||+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~--~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~ 233 (482)
T PLN03007 158 CASYCIRVHKPQKKVASSSE--PFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAY 233 (482)
T ss_pred HHHHHHHhcccccccCCCCc--eeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHH
Confidence 65543222111111111000 11234443 2222233221 12222344555555667788899999999999987
Q ss_pred HHHhhhhcCCCCcccccccccCCCCC-----CCCcc-cccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhh
Q 012613 227 LTTIHHQYFSIPVFPIGPFHKYFPAS-----SSSLL-SQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLAN 300 (460)
Q Consensus 227 ~~~~~~~~~~~pv~~vGpl~~~~~~~-----~~~~~-~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~ 300 (460)
.+.+ +.....++++|||+....... ..... ..+.++.+|+++++++++|||||||+...+..++.+++.+|+.
T Consensus 234 ~~~~-~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~ 312 (482)
T PLN03007 234 ADFY-KSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEG 312 (482)
T ss_pred HHHH-HhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHH
Confidence 7777 665556799999986432110 00111 1235589999998889999999999988888999999999999
Q ss_pred CCCceEEEEcCCcccchhhhccCchhHHHhhc-CCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeeccc
Q 012613 301 SRVPFLWVVRPGLVREAEWLELLPTGFVEMLD-GRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPY 379 (460)
Q Consensus 301 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 379 (460)
++.+|||+++........ ...+|+++.+|.. .|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+
T Consensus 313 ~~~~flw~~~~~~~~~~~-~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 313 SGQNFIWVVRKNENQGEK-EEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred CCCCEEEEEecCCcccch-hhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccc
Confidence 999999999864211101 2348999988875 45566699999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHhhhhheeeEec--------CC-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 012613 380 LGDQMVNARYISHVWRLGLHL--------DG-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSL 450 (460)
Q Consensus 380 ~~DQ~~na~~v~~~~G~G~~l--------~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (460)
++||+.||+++++.+++|+.+ +. .+++++|+++|+++|.+++|+.||+||+++++.+++|+.+|||+++++
T Consensus 392 ~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l 471 (482)
T PLN03007 392 GAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDL 471 (482)
T ss_pred hhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999887434444443 33 689999999999999997778999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 012613 451 ERLIDHILSF 460 (460)
Q Consensus 451 ~~~~~~~~~~ 460 (460)
+++++.+.++
T Consensus 472 ~~~v~~~~~~ 481 (482)
T PLN03007 472 NKFMEELNSR 481 (482)
T ss_pred HHHHHHHHhc
Confidence 9999998753
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-61 Score=467.87 Aligned_cols=417 Identities=23% Similarity=0.326 Sum_probs=314.8
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---CC---CeEEEEcC--CCCCCCccCcccHH-H
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACN---YP---HFEFHSIS--ASLSETEASTEDMV-A 84 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~---~~---gi~~~~~~--~~~~~~~~~~~~~~-~ 84 (460)
++||+++|++++||++|++.||+.|+.+|+.|||++++.+...... .+ .+.+.++| ++++++.+...+.. .
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~ 84 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVT 84 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChh
Confidence 6899999999999999999999999999999999999976432211 11 27777787 67776644322221 1
Q ss_pred HHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCC
Q 012613 85 ILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYL 164 (460)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
....+..... .+.+.++.+.+ + . +||+||+|. ..|+..+|+++|||++.|++++++..+.+.. +. ..+
T Consensus 85 ~~~~~~~a~~-~~~~~~~~~l~--~--~-~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~----~~~ 152 (453)
T PLN02764 85 SADLLMSAMD-LTRDQVEVVVR--A--V-EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG----GEL 152 (453)
T ss_pred HHHHHHHHHH-HhHHHHHHHHH--h--C-CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----ccC
Confidence 1111222111 23333334333 1 2 679999995 8899999999999999999999988777652 11 011
Q ss_pred CCCCCcccccccCCC----CCCCCCCCCCcC----CCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCC
Q 012613 165 PIQDSQLEARVIECP----PLRVKDIPIFET----GDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFS 236 (460)
Q Consensus 165 p~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~ 236 (460)
+ ..+++++ .++.++.+.... .........+.........++.+++|||.+||+.+++.+ +...+
T Consensus 153 ~-------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~-~~~~~ 224 (453)
T PLN02764 153 G-------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYI-EKHCR 224 (453)
T ss_pred C-------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHH-HhhcC
Confidence 0 0112332 133333332110 111123334444445567788999999999999999988 66444
Q ss_pred CCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccc
Q 012613 237 IPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVRE 316 (460)
Q Consensus 237 ~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
++++.|||+...... ....+.++.+|||++++++||||||||+..++.+++.+++.+|+..+.+|+|+++......
T Consensus 225 ~~v~~VGPL~~~~~~----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~ 300 (453)
T PLN02764 225 KKVLLTGPVFPEPDK----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSS 300 (453)
T ss_pred CcEEEeccCccCccc----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc
Confidence 579999999754311 1112346999999999999999999999999999999999999999999999998532111
Q ss_pred hhhhccCchhHHHhhcCCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhhe
Q 012613 317 AEWLELLPTGFVEMLDGRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWR 395 (460)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 395 (460)
+....+|++|.+|..+++.++ +|+||.+||+|+++++||||||+||++||+.+|||+|++|+++||+.||+++++.+|
T Consensus 301 -~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g 379 (453)
T PLN02764 301 -TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELK 379 (453)
T ss_pred -chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhc
Confidence 112359999999998888776 999999999999999999999999999999999999999999999999999964479
Q ss_pred eeEecCC----ccCHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 396 LGLHLDG----NVERREIEIAVRRVMIE--TEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 396 ~G~~l~~----~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+|+.+.. .++.++|+++|+++|++ ++++.+|+++++++++++ ++||+.++++++++.+.+
T Consensus 380 ~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 380 VSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred eEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Confidence 9998743 48999999999999987 347889999999999998 899999999999999865
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.9e-61 Score=468.24 Aligned_cols=418 Identities=21% Similarity=0.317 Sum_probs=310.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeEEEEc--C--CCCCCCccCcccHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACN----YPHFEFHSI--S--ASLSETEASTEDMVA 84 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~----~~gi~~~~~--~--~~~~~~~~~~~~~~~ 84 (460)
.+.||+++|+|++||++|++.||+.|+++||+|||++++.+...... ..++.+..+ | ++++++.....++..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 46899999999999999999999999999999999998855533211 124556554 3 567766543333332
Q ss_pred HHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCC
Q 012613 85 ILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYL 164 (460)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
.+..+.......+.+.++++.+ + . ++|+||+| ++.|+..+|+++|||++.|+++++.... +.+.+. ...
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~--~--~-~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~~ 151 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVR--A--L-RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GKL 151 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--h--C-CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----ccc
Confidence 2222222222334444454444 1 2 78999999 5789999999999999999999887654 333221 000
Q ss_pred CCCCCcccccccCCCC----CCCCCCCCCcCCCCCcHHHHH-HHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCc
Q 012613 165 PIQDSQLEARVIECPP----LRVKDIPIFETGDPKNVDKVI-SAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPV 239 (460)
Q Consensus 165 p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv 239 (460)
. ..+++++. ++..+++.. .........+ ....+....++.+++|||.+||+..++.+ ...+.+++
T Consensus 152 ~-------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~-~~~~~~~v 221 (442)
T PLN02208 152 G-------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYI-SRQYHKKV 221 (442)
T ss_pred C-------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHH-HhhcCCCE
Confidence 0 01233332 333444421 1111222222 23334566789999999999999988888 66555679
Q ss_pred ccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhh
Q 012613 240 FPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEW 319 (460)
Q Consensus 240 ~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 319 (460)
+.|||++..... ..+.+.++.+||+++++++||||||||+..++.+++.+++.+++..+.+++|+++...... +.
T Consensus 222 ~~vGpl~~~~~~----~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~-~~ 296 (442)
T PLN02208 222 LLTGPMFPEPDT----SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS-TV 296 (442)
T ss_pred EEEeecccCcCC----CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc-ch
Confidence 999999865321 1122445999999988899999999999988999999999998888999999988542100 11
Q ss_pred hccCchhHHHhhcCCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeE
Q 012613 320 LELLPTGFVEMLDGRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGL 398 (460)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 398 (460)
...+|++|.+|..++..++ +|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+|+
T Consensus 297 ~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv 376 (442)
T PLN02208 297 QEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSV 376 (442)
T ss_pred hhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeE
Confidence 2358999999987655554 999999999999999999999999999999999999999999999999998766479999
Q ss_pred ecCC-c---cCHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 399 HLDG-N---VERREIEIAVRRVMIET--EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 399 ~l~~-~---~~~~~l~~ai~~vl~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
.++. + +++++|+++|+++|+++ +|+.+|++|+++++++. ++||+.++++++++.+.++
T Consensus 377 ~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 377 EVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred EeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 9976 4 89999999999999874 37899999999999986 6889999999999998753
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9.8e-61 Score=465.07 Aligned_cols=417 Identities=21% Similarity=0.286 Sum_probs=310.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCeEEEEc--C--CCCCCCccCcccHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC----NYPHFEFHSI--S--ASLSETEASTEDMVA 84 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~----~~~gi~~~~~--~--~~~~~~~~~~~~~~~ 84 (460)
.+.||+++|+|++||++|++.||+.|+++|++|||++++.+..... ...++.+..+ | ++++++.+...++..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 4689999999999999999999999999999999999986543221 1124777554 3 677776543333322
Q ss_pred HHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCC
Q 012613 85 ILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYL 164 (460)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
............+.+.++.+.. . . +||+||+|. +.|+..+|+++|||++.|+++++...+...+ +.. ... .
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~--~--~-~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~-~~~-~ 153 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVR--A--L-KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRA-ELG-F 153 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--c--C-CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHh-hcC-C
Confidence 1111122222244455555443 1 3 789999995 8899999999999999999999988877654 111 000 0
Q ss_pred CCCCCcccccccCCCC----CCCCCC--CCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCC
Q 012613 165 PIQDSQLEARVIECPP----LRVKDI--PIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIP 238 (460)
Q Consensus 165 p~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~p 238 (460)
| +++++. ++..+. +... .. ....+.+..+...+++.+++|||.+||+..++.+ +..+++|
T Consensus 154 ~---------~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~-~~~~~~~ 219 (446)
T PLN00414 154 P---------PPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFI-ERQCQRK 219 (446)
T ss_pred C---------CCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHH-HHhcCCC
Confidence 1 122211 111111 1101 00 1233444445667789999999999999999888 7655567
Q ss_pred cccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchh
Q 012613 239 VFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAE 318 (460)
Q Consensus 239 v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 318 (460)
++.|||+...... ......+.++.+|||++++++||||||||......+++.+++.+|+..+.+|+|++......+ +
T Consensus 220 v~~VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~-~ 296 (446)
T PLN00414 220 VLLTGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS-T 296 (446)
T ss_pred eEEEcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc-c
Confidence 9999999753321 001112345899999999999999999999999999999999999999999999998632111 1
Q ss_pred hhccCchhHHHhhcCCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheee
Q 012613 319 WLELLPTGFVEMLDGRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLG 397 (460)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 397 (460)
....+|++|.+|.+++++++ +|+||.+||+|+++++||||||+||++||+.+|||+|++|+++||+.||+++++.+|+|
T Consensus 297 ~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g 376 (446)
T PLN00414 297 VQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVS 376 (446)
T ss_pred chhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeE
Confidence 12358999999999999887 99999999999999999999999999999999999999999999999999996438999
Q ss_pred EecCC----ccCHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 398 LHLDG----NVERREIEIAVRRVMIET--EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 398 ~~l~~----~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+.+.. .+++++|+++|+++|.++ +++.||++|+++++.+. +.||+...++++++.+++
T Consensus 377 ~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~----~~gg~ss~l~~~v~~~~~ 440 (446)
T PLN00414 377 VKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV----SPGLLSGYADKFVEALEN 440 (446)
T ss_pred EEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHH
Confidence 99964 389999999999999863 37889999999999976 445534558999998865
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-60 Score=468.71 Aligned_cols=440 Identities=28% Similarity=0.400 Sum_probs=324.5
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCCCCC---------CCCCCCCeEEEEcCCCCCC-CccC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGF---SITIIHTNLNPL---------NACNYPHFEFHSISASLSE-TEAS 78 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh---~V~~~~~~~~~~---------~~~~~~gi~~~~~~~~~~~-~~~~ 78 (460)
+++.||+++|+|++||++|++.||+.|+.+|. .||++.+..+.. .....++++|+.+|++..+ +...
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 35679999999999999999999999999984 567766543221 0111136999999965422 1110
Q ss_pred -cccHHHHHHHHHHhcchhHHHHHHHhhccC--CCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhc
Q 012613 79 -TEDMVAILIALNAKCVVPFWDCLVKLTSIS--NVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAY 155 (460)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~ 155 (460)
.......+..+...+...+.+.++.+.... +... ++++||+|.+.+|+..+|+++|||++.|++++++..+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSV-RVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC-CeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 112222333344556666777776654200 0011 359999999999999999999999999999999888877654
Q ss_pred hhhhhcCCCC--CCCCcccccccCC-CCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhh
Q 012613 156 PILREKCYLP--IQDSQLEARVIEC-PPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHH 232 (460)
Q Consensus 156 ~~~~~~~~~p--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~ 232 (460)
+......... .........+|++ ..++..+++...... .....+....+....++.+++|||.+||+..++.+ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l-~ 236 (475)
T PLN02167 160 PERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYF-S 236 (475)
T ss_pred HHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHH-H
Confidence 4321110000 0000111235666 345666665322111 11333444445567788999999999999988887 5
Q ss_pred hcC-C-CCcccccccccCCCCCCCCcc--cccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEE
Q 012613 233 QYF-S-IPVFPIGPFHKYFPASSSSLL--SQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWV 308 (460)
Q Consensus 233 ~~~-~-~pv~~vGpl~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (460)
... . +++++|||++...... ...+ ..+.++.+||++++.++||||||||+...+.+++.+++.+|+.++.+|||+
T Consensus 237 ~~~~~~p~v~~vGpl~~~~~~~-~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~ 315 (475)
T PLN02167 237 RLPENYPPVYPVGPILSLKDRT-SPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWS 315 (475)
T ss_pred hhcccCCeeEEecccccccccc-CCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 531 1 4699999998643210 0111 123469999999888899999999998889999999999999999999999
Q ss_pred EcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHH
Q 012613 309 VRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNAR 388 (460)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 388 (460)
++.......+....+|++|.++..+++++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+
T Consensus 316 ~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 395 (475)
T PLN02167 316 IRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAF 395 (475)
T ss_pred EecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHH
Confidence 97532100011234899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-hhhhheeeEecCC--------ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 389 Y-ISHVWRLGLHLDG--------NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 389 ~-v~~~~G~G~~l~~--------~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+ +++ +|+|+.+.. .+++++|+++|+++|.++ +.||+||+++++++++|+.+|||+.++++++++.+.+
T Consensus 396 ~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 396 TMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 6 666 899998852 469999999999999863 4899999999999999999999999999999998864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.6e-53 Score=418.38 Aligned_cols=407 Identities=19% Similarity=0.194 Sum_probs=288.2
Q ss_pred CceEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCeEEEEcCCCCCC---CccCc------c--
Q 012613 14 GKRVILF-PLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP-LNACNYPHFEFHSISASLSE---TEAST------E-- 80 (460)
Q Consensus 14 ~~~Il~~-~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~-~~~~~~~gi~~~~~~~~~~~---~~~~~------~-- 80 (460)
+.||+++ |.++.||+.-+.+|+++|++|||+||++++.... .......+++.+.++..... ..... .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 4557655 8899999999999999999999999999885321 11112356776666411110 00000 0
Q ss_pred -cH----HHHHHHHHHhcchhHHH--HHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHc-CCCeEEEeCccHHHHHHH
Q 012613 81 -DM----VAILIALNAKCVVPFWD--CLVKLTSISNVQEDSFACIITDPLWYFVHAVANDF-KLPTIILQTSSVSAYLAF 152 (460)
Q Consensus 81 -~~----~~~~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~l-gIP~v~~~~~~~~~~~~~ 152 (460)
+. ......+...|...+.+ +.+.+.. ... ++|+||+|.+..|+..+|+++ ++|.|.+++.........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~---~~~-kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~ 175 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN---KNN-KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFE 175 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc---CCC-ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHH
Confidence 00 11122334566666652 3344431 114 799999999999999999999 999988877655444333
Q ss_pred HhchhhhhcCCCCCCC------CcccccccCCCCCCCCCCC--CCcCCCCCcHHHHHH----HHHhhhccccEEEEcCch
Q 012613 153 AAYPILREKCYLPIQD------SQLEARVIECPPLRVKDIP--IFETGDPKNVDKVIS----AMVSLIKASSGIIWNSYR 220 (460)
Q Consensus 153 ~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 220 (460)
..-+.+.+++|+|... +.+++|+.|+....+..+. .......+...+.+. ...+...+.+++|+|+.+
T Consensus 176 ~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~ 255 (507)
T PHA03392 176 TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHP 255 (507)
T ss_pred hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCc
Confidence 3222677788888743 5666666664311100000 000011111122221 234556778899999999
Q ss_pred hccHHHHHHhhhhcCCCCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCccc---CCHHHHHHHHHH
Q 012613 221 ELEQVELTTIHHQYFSIPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVN---IDETEFLEIAWG 297 (460)
Q Consensus 221 ~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~---~~~~~~~~~~~a 297 (460)
.+|++ + .+++++++|||++.+... ..+.++++.+|++.. ++++|||||||+.. .+.+.++.+++|
T Consensus 256 ~~d~~------r-p~~p~v~~vGgi~~~~~~----~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a 323 (507)
T PHA03392 256 VFDNN------R-PVPPSVQYLGGLHLHKKP----PQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRT 323 (507)
T ss_pred cccCC------C-CCCCCeeeecccccCCCC----CCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHH
Confidence 99987 3 334569999999875321 123344589999875 46899999999864 567889999999
Q ss_pred HhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeec
Q 012613 298 LANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 298 l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 377 (460)
+++.+.++||+.++.... ..+| +|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++
T Consensus 324 ~~~l~~~viw~~~~~~~~-----~~~p--------~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~i 390 (507)
T PHA03392 324 FKKLPYNVLWKYDGEVEA-----INLP--------ANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGL 390 (507)
T ss_pred HHhCCCeEEEEECCCcCc-----ccCC--------CceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEEC
Confidence 999999999998754310 1244 455999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHH
Q 012613 378 PYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPG-GSSYQSLERLID 455 (460)
Q Consensus 378 P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~ 455 (460)
|+++||+.||+|+++ +|+|+.++. ++++++|.++|+++|+| ++|++||+++++.+++ +. .+.++++..++.
T Consensus 391 P~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~---~p~~~~~~av~~iE~ 463 (507)
T PHA03392 391 PMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRH---QPMTPLHKAIWYTEH 463 (507)
T ss_pred CCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 999999999999999 699999998 89999999999999999 8999999999999994 22 355666655544
Q ss_pred H
Q 012613 456 H 456 (460)
Q Consensus 456 ~ 456 (460)
.
T Consensus 464 v 464 (507)
T PHA03392 464 V 464 (507)
T ss_pred H
Confidence 3
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.4e-55 Score=440.82 Aligned_cols=386 Identities=26% Similarity=0.337 Sum_probs=235.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCeEEEEcCCCCCCCccCc--c-----------
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPL-NACNYPHFEFHSISASLSETEAST--E----------- 80 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~~~--~----------- 80 (460)
+||+++|+ ++||+.++..|+++|++|||+||++++..... ......++++..++...+...... .
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESS 79 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHC
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhcc
Confidence 47888986 66999999999999999999999998853211 111224667777765444322100 0
Q ss_pred ---cHHHHH-------HHHHHhcchhHH--HHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHH
Q 012613 81 ---DMVAIL-------IALNAKCVVPFW--DCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSA 148 (460)
Q Consensus 81 ---~~~~~~-------~~~~~~~~~~l~--~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~ 148 (460)
.....+ ..+...|...+. ++++.+++ . ++|++|+|.+..|+..+|+.++||.+.+.++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-----~-~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 80 FANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-----E-KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp CHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-----H-HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----h-ccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 011111 112234433332 13334444 3 79999999999999999999999998865433222
Q ss_pred HHHHHhchhhhhcCCCCCCC------CcccccccCCCCCC-----CCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEc
Q 012613 149 YLAFAAYPILREKCYLPIQD------SQLEARVIECPPLR-----VKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWN 217 (460)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (460)
.......+.+.+++|+|... +.+.+|+.+..... ...+..............-....+.+.+.+++++|
T Consensus 154 ~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n 233 (500)
T PF00201_consen 154 DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLIN 233 (500)
T ss_dssp CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSS
T ss_pred hhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhh
Confidence 11111124456677777644 34444444432100 00000000000000000001123334556778899
Q ss_pred CchhccHHHHHHhhhhcCCCCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCccc-CCHHHHHHHHH
Q 012613 218 SYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVN-IDETEFLEIAW 296 (460)
Q Consensus 218 ~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~-~~~~~~~~~~~ 296 (460)
+.+.++.+ ++. .+++++|||++.+.++ +++. +++.|++...++++|||||||+.. ++.+..+.+++
T Consensus 234 s~~~ld~p--rp~-----~p~v~~vGgl~~~~~~----~l~~--~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~ 300 (500)
T PF00201_consen 234 SHPSLDFP--RPL-----LPNVVEVGGLHIKPAK----PLPE--ELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAE 300 (500)
T ss_dssp TEEE------HHH-----HCTSTTGCGC-S--------TCHH--HHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHH
T ss_pred ccccCcCC--cch-----hhcccccCcccccccc----cccc--ccchhhhccCCCCEEEEecCcccchhHHHHHHHHHH
Confidence 99999977 333 2459999999987554 4544 489999975678999999999976 44455788999
Q ss_pred HHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceee
Q 012613 297 GLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMIC 376 (460)
Q Consensus 297 al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~ 376 (460)
++++++.++||+..+.. ...+| +|+++++|+||.+||.|+++++||||||+||++||+++|||+|+
T Consensus 301 ~~~~~~~~~iW~~~~~~------~~~l~--------~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~ 366 (500)
T PF00201_consen 301 AFENLPQRFIWKYEGEP------PENLP--------KNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLG 366 (500)
T ss_dssp HHHCSTTEEEEEETCSH------GCHHH--------TTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE
T ss_pred HHhhCCCcccccccccc------ccccc--------ceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccC
Confidence 99999999999998632 12233 45599999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 012613 377 QPYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHL 438 (460)
Q Consensus 377 ~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~ 438 (460)
+|+++||+.||+++++ .|+|+.++. ++|.++|.++|+++|+| ++|++||+++++.+++
T Consensus 367 ~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 367 IPLFGDQPRNAARVEE-KGVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRD 425 (500)
T ss_dssp -GCSTTHHHHHHHHHH-TTSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT-
T ss_pred CCCcccCCccceEEEE-EeeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhc
Confidence 9999999999999999 599999998 99999999999999999 8999999999999985
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=9.6e-45 Score=354.93 Aligned_cols=374 Identities=20% Similarity=0.269 Sum_probs=261.2
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccC----cccHHHHHHHHHHhcch
Q 012613 20 FPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEAS----TEDMVAILIALNAKCVV 95 (460)
Q Consensus 20 ~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 95 (460)
+.+|+.||++|+++||++|++|||+|+|++++.+...... .|+.+..++..+...... ..+.......+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999865544444 689999998654431110 02233344444444444
Q ss_pred hHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcccccc
Q 012613 96 PFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLEARV 175 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 175 (460)
.+..+.+.+.+ . +||+||+|.+++++..+|+.+|||+|.+++.+..... ++... .|... ..+..
T Consensus 80 ~~~~l~~~~~~-----~-~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----~~~~~----~~~~~-~~~~~- 143 (392)
T TIGR01426 80 VLPQLEEAYKG-----D-RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE----FEEMV----SPAGE-GSAEE- 143 (392)
T ss_pred HHHHHHHHhcC-----C-CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc----ccccc----cccch-hhhhh-
Confidence 44444444433 4 8999999999889999999999999998654321100 00000 01100 00000
Q ss_pred cCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhh------------hccccEEEEcCchhccHHHHHHhhhhcCCCCccccc
Q 012613 176 IECPPLRVKDIPIFETGDPKNVDKVISAMVSL------------IKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIG 243 (460)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vG 243 (460)
.....+. ...+.+.+...... ....+..+..+.+.|+++ ..+++.+++++|
T Consensus 144 ---~~~~~~~--------~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~G 206 (392)
T TIGR01426 144 ---GAIAERG--------LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA------GETFDDSFTFVG 206 (392)
T ss_pred ---hccccch--------hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC------ccccCCCeEEEC
Confidence 0000000 00011111111110 112233566666666655 556667799999
Q ss_pred ccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccC
Q 012613 244 PFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELL 323 (460)
Q Consensus 244 pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l 323 (460)
|+...... ...|.....++++||+|+||+.......++.+++++.+.+.+++|.++....
T Consensus 207 p~~~~~~~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~--------- 266 (392)
T TIGR01426 207 PCIGDRKE-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD--------- 266 (392)
T ss_pred CCCCCccc-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC---------
Confidence 97754321 1235555567899999999987656668888999999999999998865421
Q ss_pred chhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-
Q 012613 324 PTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG- 402 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~- 402 (460)
.+.+ ...++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++++ +|+|+.+..
T Consensus 267 ~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~ 342 (392)
T TIGR01426 267 PADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPE 342 (392)
T ss_pred hhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEeccc
Confidence 0111 112355689999999999999998 99999999999999999999999999999999999999 699999987
Q ss_pred ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 403 NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 403 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+++++.|.++|+++|+| +.|+++++++++.++ ..++..++++.+++.+.
T Consensus 343 ~~~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 343 EVTAEKLREAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFLA 391 (392)
T ss_pred cCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhc
Confidence 89999999999999999 899999999999999 67788888888877654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7.3e-45 Score=357.45 Aligned_cols=376 Identities=17% Similarity=0.162 Sum_probs=249.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccC-----------cccHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEAS-----------TEDMV 83 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~-----------~~~~~ 83 (460)
|||+|+++|+.||++|+++||++|++|||+|+|++++........ .|++|..+++........ .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-cCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 799999999999999999999999999999999999844433333 689999988644321110 01122
Q ss_pred HHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCC
Q 012613 84 AILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCY 163 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
.....+...+...+.++++.+.. . +||+||+|.+.+++..+|+++|||++.+++++...... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-----~-~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-----------~ 142 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARD-----W-GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-----------F 142 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----c-CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc-----------C
Confidence 23333444445555555555544 4 89999999988889999999999999998765432110 0
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhc---------cccEEEEcCchhccHHHHHHhhhhc
Q 012613 164 LPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIK---------ASSGIIWNSYRELEQVELTTIHHQY 234 (460)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~le~~~~~~~~~~~ 234 (460)
.|... .... ......... ................+. ..+..+....+.+.++ .++
T Consensus 143 ~~~~~--~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 206 (401)
T cd03784 143 PPPLG--RANL-------RLYALLEAE-LWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP------PPD 206 (401)
T ss_pred CCccc--hHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC------CCC
Confidence 00000 0000 000000000 000000001111111110 0112222222333222 444
Q ss_pred CCCCccccc-ccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCccc-CCHHHHHHHHHHHhhCCCceEEEEcCC
Q 012613 235 FSIPVFPIG-PFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVN-IDETEFLEIAWGLANSRVPFLWVVRPG 312 (460)
Q Consensus 235 ~~~pv~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (460)
++....++| ++...+. ....+.++..|++. ++++||||+||+.. ........++++++..+.+++|+++..
T Consensus 207 ~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~ 279 (401)
T cd03784 207 WPRFDLVTGYGFRDVPY-----NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWG 279 (401)
T ss_pred ccccCcEeCCCCCCCCC-----CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCc
Confidence 445566765 3332221 12234446788875 67999999999976 344667779999999899999998865
Q ss_pred cccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhh
Q 012613 313 LVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISH 392 (460)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 392 (460)
... . ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||+++++
T Consensus 280 ~~~---------~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~ 345 (401)
T cd03784 280 GLG---------A---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE 345 (401)
T ss_pred ccc---------c---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH
Confidence 311 0 122455699999999999999998 99999999999999999999999999999999999999
Q ss_pred hheeeEecCC-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 012613 393 VWRLGLHLDG-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLI 454 (460)
Q Consensus 393 ~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (460)
+|+|+.++. .+++++|.++|++++++ + +++++++.++.++ ..++..++++.+.
T Consensus 346 -~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~----~~~g~~~~~~~ie 399 (401)
T cd03784 346 -LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIR----EEDGVPSAADVIE 399 (401)
T ss_pred -CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHH----hccCHHHHHHHHh
Confidence 699999988 88999999999999997 4 5666777777776 4566666665554
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-43 Score=341.31 Aligned_cols=390 Identities=17% Similarity=0.183 Sum_probs=250.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHH---HH
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIA---LN 90 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 90 (460)
+|||+++..|+.||++|+++|+++|.++||+|+|++++........ .|+.|..++.. ..............+. ..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIR-DSELATEDGKFAGVKSFRRLL 78 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeecccc-CChhhhhhhhhhccchhHHHh
Confidence 4899999999999999999999999999999999999855555544 46778887754 2211111111111111 22
Q ss_pred HhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCC-C
Q 012613 91 AKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQD-S 169 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~ 169 (460)
........+.++-+.+ . .||+++.|...+.+ .++...++|++.......+....... +. ++... +
T Consensus 79 ~~~~~~~~~~~~~~~e-----~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~ 144 (406)
T COG1819 79 QQFKKLIRELLELLRE-----L-EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-----PL--PPVGIAG 144 (406)
T ss_pred hhhhhhhHHHHHHHHh-----c-chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----Cc--ccccccc
Confidence 2222333345555555 3 78999999777655 88999999998865543322111100 00 00000 0
Q ss_pred cccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhc---cccEEEEcCchhccHHHHHHhh-h-hcCCCCcccccc
Q 012613 170 QLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIK---ASSGIIWNSYRELEQVELTTIH-H-QYFSIPVFPIGP 244 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~le~~~~~~~~-~-~~~~~pv~~vGp 244 (460)
....+... ..................... +...... .+..-+..+.+.++..+..... . ..++....++||
T Consensus 145 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 220 (406)
T COG1819 145 KLPIPLYP---LPPRLVRPLIFARSWLPKLVV-RRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGP 220 (406)
T ss_pred cccccccc---cChhhccccccchhhhhhhhh-hhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCcccc
Confidence 00000000 000000000000000000000 0000000 0000011111222211111000 0 111223777777
Q ss_pred cccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCc
Q 012613 245 FHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLP 324 (460)
Q Consensus 245 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~ 324 (460)
+...... +...|.. .++++||+|+||.... .++++.+++++..++.++|+.++... +. ...+|
T Consensus 221 ~~~~~~~----------~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~-~~---~~~~p 283 (406)
T COG1819 221 LLGEAAN----------ELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGAR-DT---LVNVP 283 (406)
T ss_pred ccccccc----------cCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccc-cc---cccCC
Confidence 7765432 1233432 4789999999999876 78889999999999999999987622 11 24467
Q ss_pred hhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-c
Q 012613 325 TGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-N 403 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~ 403 (460)
.++ .+.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|+++ +|+|+.+.. .
T Consensus 284 ~n~--------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~~ 352 (406)
T COG1819 284 DNV--------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFEE 352 (406)
T ss_pred Cce--------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCccc
Confidence 666 99999999999999998 99999999999999999999999999999999999999 799999998 8
Q ss_pred cCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 404 VERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 404 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
++++.++++|+++|+| +.|+++++++++.++ +.++..++++.+.+..+
T Consensus 353 l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~----~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 353 LTEERLRAAVNEVLAD---DSYRRAAERLAEEFK----EEDGPAKAADLLEEFAR 400 (406)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHh
Confidence 9999999999999999 999999999999999 66777777777766554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=5.1e-42 Score=346.52 Aligned_cols=393 Identities=34% Similarity=0.496 Sum_probs=261.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCC----------eEEEEcCCCCCCCccCcc-c
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACN-YPH----------FEFHSISASLSETEASTE-D 81 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~-~~g----------i~~~~~~~~~~~~~~~~~-~ 81 (460)
+.+++++++|++||++|+..+|+.|+++||+||++.+......... ... +.+...++++++...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 5688888999999999999999999999999999998755433221 111 111111123333322211 1
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcC-CCeEEEeCccHHHHHHHHhchhhhh
Q 012613 82 MVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFK-LPTIILQTSSVSAYLAFAAYPILRE 160 (460)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lg-IP~v~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.......+...|...+.+....+.. .... ++|++|+|.+..+...++.... ||...+.+......... .+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g----~~~~ 157 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLL--LKSE-KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALG----LPSP 157 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHH--hhcC-CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcC----CcCc
Confidence 2222455667777777765555443 2222 4999999998767777776664 88888877766654432 2333
Q ss_pred cCCCCCCCC-------cccccccCCCCCCCCCCCCCcCCC-----CCcHHHHH--------HHHHhhhccccEEEEcCch
Q 012613 161 KCYLPIQDS-------QLEARVIECPPLRVKDIPIFETGD-----PKNVDKVI--------SAMVSLIKASSGIIWNSYR 220 (460)
Q Consensus 161 ~~~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~~~~~~l~~~~~ 220 (460)
..|+|...+ .+..+..++. ...++...... ........ ....+...++...++|+.+
T Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~ 234 (496)
T KOG1192|consen 158 LSYVPSPFSLSSGDDMSFPERVPNLI---KKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNP 234 (496)
T ss_pred ccccCcccCccccccCcHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCc
Confidence 335554332 2222222111 00000000000 00000000 1122334555677777776
Q ss_pred hccHHHHHHhhhhcCCCCcccccccccCCCCCCCCcccccccchhhhccCCCC--eEEEEEccCcc---cCCHHHHHHHH
Q 012613 221 ELEQVELTTIHHQYFSIPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPK--SVIYVSFGSVV---NIDETEFLEIA 295 (460)
Q Consensus 221 ~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vI~vs~GS~~---~~~~~~~~~~~ 295 (460)
.++.. .....+++++|||++..... .... ...+|++..+.. ++|||||||+. .++.++...++
T Consensus 235 ~~~~~------~~~~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~ 302 (496)
T KOG1192|consen 235 LLDFE------PRPLLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELA 302 (496)
T ss_pred ccCCC------CCCCCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHH
Confidence 66552 11123569999999987433 1111 246777765554 89999999998 68999999999
Q ss_pred HHHhhC-CCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHh-hcCCCccceeeccCchhHHHhHhcCCc
Q 012613 296 WGLANS-RVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEV-LAHPAVGGFLTHGGWNSTLESICEGVP 373 (460)
Q Consensus 296 ~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~l-l~~~~~~~~I~HGG~gs~~eal~~GvP 373 (460)
.+++++ ++.|+|++..... ..+++++.++.++|+...+|+||.++ |.|+++++||||||+|||+|++++|||
T Consensus 303 ~~l~~~~~~~FiW~~~~~~~------~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP 376 (496)
T KOG1192|consen 303 KALESLQGVTFLWKYRPDDS------IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVP 376 (496)
T ss_pred HHHHhCCCceEEEEecCCcc------hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCc
Confidence 999999 8889999987531 11334442222356778899999998 699999999999999999999999999
Q ss_pred eeecccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 012613 374 MICQPYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHL 438 (460)
Q Consensus 374 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~ 438 (460)
+|++|+++||+.||++++++ |.|..+.+ +++.+.+.+++.+++++ ++|+++++++++.++.
T Consensus 377 ~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 377 MVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred eecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 99999999999999999996 77766666 77777799999999999 8999999999999884
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.4e-25 Score=214.34 Aligned_cols=336 Identities=16% Similarity=0.166 Sum_probs=208.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCeEEEEcCC-CCCCCccCcccHHHHHHHHHHh
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLN-ACNYPHFEFHSISA-SLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~-~~~~~gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
++|++.+.|+.||++|.+++|++|.++||+|+|+++...... .....|+.+..++. ++. .......+......
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~-----~~~~~~~~~~~~~~ 76 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLR-----RYFDLKNIKDPFLV 76 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcC-----CCchHHHHHHHHHH
Confidence 578888889999999999999999999999999998744422 22224787877763 221 11111222222222
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchh--HHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCc
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYF--VHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQ 170 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~--~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (460)
... +...+.-+++ . +||+|++...+.+ +..+|..+++|++..........
T Consensus 77 ~~~-~~~~~~i~~~-----~-kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~--------------------- 128 (352)
T PRK12446 77 MKG-VMDAYVRIRK-----L-KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGL--------------------- 128 (352)
T ss_pred HHH-HHHHHHHHHh-----c-CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccH---------------------
Confidence 221 2223333444 4 9999999876643 56789999999988654311100
Q ss_pred ccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCC-CCcccccccccCC
Q 012613 171 LEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFS-IPVFPIGPFHKYF 249 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~-~pv~~vGpl~~~~ 249 (460)
..+.+ .+.++.++ .++++. ...++ .+++++|+...+.
T Consensus 129 --------------------------~nr~~------~~~a~~v~-~~f~~~---------~~~~~~~k~~~tG~Pvr~~ 166 (352)
T PRK12446 129 --------------------------ANKIA------LRFASKIF-VTFEEA---------AKHLPKEKVIYTGSPVREE 166 (352)
T ss_pred --------------------------HHHHH------HHhhCEEE-EEccch---------hhhCCCCCeEEECCcCCcc
Confidence 00111 11222222 233321 12222 3478889666442
Q ss_pred CCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCH-HHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHH
Q 012613 250 PASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDE-TEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFV 328 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 328 (460)
-. . .........+.-.+++++|+|..||...... +.+..++..+.. +.+++|.++.+..+ +..
T Consensus 167 ~~---~--~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~---------~~~- 230 (352)
T PRK12446 167 VL---K--GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLD---------DSL- 230 (352)
T ss_pred cc---c--ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHH---------HHH-
Confidence 21 0 0011111222223467899999999986322 223334444432 47888888865311 111
Q ss_pred HhhcCCceeeecc-C-hHHhhcCCCccceeeccCchhHHHhHhcCCceeecccc-----cchhhhHHHhhhhheeeEecC
Q 012613 329 EMLDGRGHIVKWA-P-QQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYL-----GDQMVNARYISHVWRLGLHLD 401 (460)
Q Consensus 329 ~~~~~~~~~~~~v-p-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~~G~G~~l~ 401 (460)
+.. .+..+..|+ + -.++|.++|+ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++ .|+|..+.
T Consensus 231 ~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~ 306 (352)
T PRK12446 231 QNK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLY 306 (352)
T ss_pred hhc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcc
Confidence 000 233566777 4 3469999998 99999999999999999999999984 489999999999 59999998
Q ss_pred C-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 402 G-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 402 ~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
. +++++.|.+++.++++|. +.|++++++++ ..++++++++.+++
T Consensus 307 ~~~~~~~~l~~~l~~ll~~~--~~~~~~~~~~~------------~~~aa~~i~~~i~~ 351 (352)
T PRK12446 307 EEDVTVNSLIKHVEELSHNN--EKYKTALKKYN------------GKEAIQTIIDHISE 351 (352)
T ss_pred hhcCCHHHHHHHHHHHHcCH--HHHHHHHHHcC------------CCCHHHHHHHHHHh
Confidence 7 899999999999999872 24554443322 22555666666553
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=3e-25 Score=211.30 Aligned_cols=305 Identities=17% Similarity=0.194 Sum_probs=192.4
Q ss_pred ceEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHH---
Q 012613 15 KRVILFPLP-YQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALN--- 90 (460)
Q Consensus 15 ~~Il~~~~~-~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (460)
|||++...+ +.||+..++.||++| |||+|++++.......... . +....++.-.........+....+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-R-FPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-c-cCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 789988877 679999999999999 6999999998633322222 2 4555555322111112222222222221
Q ss_pred HhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCc
Q 012613 91 AKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQ 170 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (460)
......++++.+.+.+ . +||+||+|. .+.+..+|+..|||++.+........ +....
T Consensus 77 ~~~~~~~~~~~~~l~~-----~-~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~----------~~~~~------ 133 (318)
T PF13528_consen 77 ARLARRIRREIRWLRE-----F-RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH----------PNFWL------ 133 (318)
T ss_pred HHHHHHHHHHHHHHHh-----c-CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------ccCCc------
Confidence 2233344455555555 5 899999994 44567899999999999876532210 00000
Q ss_pred ccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhh--hccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccC
Q 012613 171 LEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSL--IKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKY 248 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~ 248 (460)
.....+.+.+.+.... ...+...+.-++. ... .. ...+.++||+...
T Consensus 134 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-------~~--~~~~~~~~p~~~~ 182 (318)
T PF13528_consen 134 ---------------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PPL-------PP--FFRVPFVGPIIRP 182 (318)
T ss_pred ---------------------chhhhHHHHHHHhhhhccCCcccceecCCcc-ccc-------cc--cccccccCchhcc
Confidence 0001122222222221 2333333433332 100 00 1236678887754
Q ss_pred CCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCC-CceEEEEcCCcccchhhhccCchhH
Q 012613 249 FPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSR-VPFLWVVRPGLVREAEWLELLPTGF 327 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~ 327 (460)
... ... ..+++.|+|++|..... .++++++..+ ..+++. +.... ...
T Consensus 183 ~~~------~~~---------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~------~~~---- 230 (318)
T PF13528_consen 183 EIR------ELP---------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA------DPR---- 230 (318)
T ss_pred ccc------ccC---------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc------ccc----
Confidence 322 000 12457899999987642 6677777776 455555 43320 111
Q ss_pred HHhhcCCceeeecc--ChHHhhcCCCccceeeccCchhHHHhHhcCCceeeccc--ccchhhhHHHhhhhheeeEecCC-
Q 012613 328 VEMLDGRGHIVKWA--PQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPY--LGDQMVNARYISHVWRLGLHLDG- 402 (460)
Q Consensus 328 ~~~~~~~~~~~~~v--p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~G~~l~~- 402 (460)
.+|+.+..+. ...++|..|++ +|+|||+||++|++++|+|+|++|. +.||..||+.+++ +|+|+.++.
T Consensus 231 ----~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~ 303 (318)
T PF13528_consen 231 ----PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQE 303 (318)
T ss_pred ----CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEcccc
Confidence 3555888876 35679999998 9999999999999999999999999 7899999999999 699999987
Q ss_pred ccCHHHHHHHHHHH
Q 012613 403 NVERREIEIAVRRV 416 (460)
Q Consensus 403 ~~~~~~l~~ai~~v 416 (460)
+++++.|++.|+++
T Consensus 304 ~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 304 DLTPERLAEFLERL 317 (318)
T ss_pred cCCHHHHHHHHhcC
Confidence 99999999999864
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=1.8e-22 Score=191.69 Aligned_cols=305 Identities=17% Similarity=0.182 Sum_probs=169.2
Q ss_pred eEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeE-EEEcCCCCCCCcc-CcccHHHHHHHHHHh
Q 012613 16 RVILFPLPYQ-GHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFE-FHSISASLSETEA-STEDMVAILIALNAK 92 (460)
Q Consensus 16 ~Il~~~~~~~-GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (460)
||++...+.. ||+.|.++||++|++ ||+|+++++......... .++. +...| ++.-... ...+....+......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-~~~~~~~~~p-~~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-YGFKVFETFP-GIKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-hcCcceeccC-CceEeecCCcCcHHHHHHhhccc
Confidence 5677666644 999999999999999 999999987642222221 2343 32333 1111100 011222222111011
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCccc
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLE 172 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 172 (460)
....+.+..+.+++ . +||+||+| ..+.+..+|+.+|||++.+..+... . + |.
T Consensus 78 ~~~~~~~~~~~l~~-----~-~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~--------~-~~------ 129 (321)
T TIGR00661 78 PKKAIRREINIIRE-----Y-NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------R--------Y-PL------ 129 (321)
T ss_pred cHHHHHHHHHHHHh-----c-CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------c--------C-Cc------
Confidence 11334445555555 4 89999999 5556788999999999987653110 0 0 00
Q ss_pred ccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhh-ccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCCCC
Q 012613 173 ARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLI-KASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPA 251 (460)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~ 251 (460)
.. +............+ ..++..+...++... . . .| +.....+
T Consensus 130 -------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~-~p-----~~~~~~~- 172 (321)
T TIGR00661 130 -------------------KT-DLIVYPTMAALRIFNERCERFIVPDYPFPY---------T-I-CP-----KIIKNME- 172 (321)
T ss_pred -------------------cc-chhHHHHHHHHHHhccccceEeeecCCCCC---------C-C-Cc-----cccccCC-
Confidence 00 00000001111111 112222222211100 0 0 01 0000000
Q ss_pred CCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhh
Q 012613 252 SSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEML 331 (460)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (460)
.+... .+...|.. .+++.|+|.+||... ..+++++++.+. +.+++..... ..+ ..
T Consensus 173 ---~~~~~-~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~--------~~~----~~ 227 (321)
T TIGR00661 173 ---GPLIR-YDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV--------AKN----SY 227 (321)
T ss_pred ---Ccccc-hhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC--------Ccc----cc
Confidence 00000 00122222 245677777887542 455677776653 2233222210 111 12
Q ss_pred cCCceeeeccC--hHHhhcCCCccceeeccCchhHHHhHhcCCceeeccccc--chhhhHHHhhhhheeeEecCC-ccCH
Q 012613 332 DGRGHIVKWAP--QQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLG--DQMVNARYISHVWRLGLHLDG-NVER 406 (460)
Q Consensus 332 ~~~~~~~~~vp--~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~-~~~~ 406 (460)
++|+.+.+|.| ..++|+.|++ +|||||++|++||+++|+|+|++|..+ ||..||+.+++ .|+|+.++. ++
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~-- 302 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL-- 302 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH--
Confidence 35668889997 4568889888 999999999999999999999999954 89999999999 699999988 55
Q ss_pred HHHHHHHHHHhcc
Q 012613 407 REIEIAVRRVMIE 419 (460)
Q Consensus 407 ~~l~~ai~~vl~~ 419 (460)
++.+++.++++|
T Consensus 303 -~~~~~~~~~~~~ 314 (321)
T TIGR00661 303 -RLLEAILDIRNM 314 (321)
T ss_pred -HHHHHHHhcccc
Confidence 666677777777
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.6e-21 Score=183.90 Aligned_cols=309 Identities=19% Similarity=0.208 Sum_probs=191.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCCCC-CCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGF-SITIIHTNLNPL-NACNYPHFEFHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh-~V~~~~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|+|++...++.||+.|.++|+++|.++|+ +|.++.+....+ ......++.++.++.+-.............+ ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~----~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPF----KL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHH----HH
Confidence 57888889999999999999999999999 588886664442 2222247888888854433322222222222 22
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcc--hhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCc
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLW--YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQ 170 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (460)
+.. +.+..+-+++ . +||+||+...+ ..+..+|..++||++...+......
T Consensus 77 ~~~-~~~a~~il~~-----~-kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~--------------------- 128 (357)
T COG0707 77 LKG-VLQARKILKK-----L-KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGL--------------------- 128 (357)
T ss_pred HHH-HHHHHHHHHH-----c-CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcch---------------------
Confidence 222 2222333333 4 99999996666 3445689999999999654311100
Q ss_pred ccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCC-CCccccc-ccccC
Q 012613 171 LEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFS-IPVFPIG-PFHKY 248 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~-~pv~~vG-pl~~~ 248 (460)
. .+.+.+ .++. +..+++..+ ...+ .++..+| |+..+
T Consensus 129 -----------------------a---nk~~~~------~a~~-V~~~f~~~~---------~~~~~~~~~~tG~Pvr~~ 166 (357)
T COG0707 129 -----------------------A---NKILSK------FAKK-VASAFPKLE---------AGVKPENVVVTGIPVRPE 166 (357)
T ss_pred -----------------------h---HHHhHH------hhce-eeecccccc---------ccCCCCceEEecCcccHH
Confidence 0 000000 1111 222333211 0011 2367777 33322
Q ss_pred CCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCC-HHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhH
Q 012613 249 FPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNID-ETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGF 327 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 327 (460)
-. . .+.. -..+... .++++|+|.-||++... .+.+..+...+.+ +..+++.++.+.. +.+
T Consensus 167 ~~----~-~~~~--~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~----------~~~ 227 (357)
T COG0707 167 FE----E-LPAA--EVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL----------EEL 227 (357)
T ss_pred hh----c-cchh--hhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH----------HHH
Confidence 11 0 1111 1111111 26799999999997521 2223333333333 4567777765431 111
Q ss_pred HHhhc-CC-ceeeeccChH-HhhcCCCccceeeccCchhHHHhHhcCCceeecccc----cchhhhHHHhhhhheeeEec
Q 012613 328 VEMLD-GR-GHIVKWAPQQ-EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYL----GDQMVNARYISHVWRLGLHL 400 (460)
Q Consensus 328 ~~~~~-~~-~~~~~~vp~~-~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~----~DQ~~na~~v~~~~G~G~~l 400 (460)
..... .+ ..+..|++.+ ++|+.+|+ +||++|.+|+.|+++.|+|+|.+|.- .||..||..++++ |+|..+
T Consensus 228 ~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i 304 (357)
T COG0707 228 KSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVI 304 (357)
T ss_pred HHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEe
Confidence 11111 12 4677888865 59999998 99999999999999999999999972 4899999999995 999999
Q ss_pred CC-ccCHHHHHHHHHHHhcc
Q 012613 401 DG-NVERREIEIAVRRVMIE 419 (460)
Q Consensus 401 ~~-~~~~~~l~~ai~~vl~~ 419 (460)
+. ++|.+.+.+.|.+++++
T Consensus 305 ~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 305 RQSELTPEKLAELILRLLSN 324 (357)
T ss_pred ccccCCHHHHHHHHHHHhcC
Confidence 98 99999999999999998
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=9.9e-20 Score=176.25 Aligned_cols=344 Identities=15% Similarity=0.129 Sum_probs=204.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhc
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP-LNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKC 93 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
|||+++..+..||...++.|+++|.++||+|++++.+... .......++.++.++..-.. .......+......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~l~~~~~~- 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLR----RKGSLANLKAPFKL- 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcC----CCChHHHHHHHHHH-
Confidence 8999999888899999999999999999999999886432 11111146777776532111 11111111111111
Q ss_pred chhHHHHHHHhhccCCCCCCCeeEEEECCcc--hhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcc
Q 012613 94 VVPFWDCLVKLTSISNVQEDSFACIITDPLW--YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQL 171 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 171 (460)
...+..+.+.+++ . +||+|++.... ..+..+++..++|++....... +
T Consensus 77 ~~~~~~~~~~ik~-----~-~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------~------ 126 (357)
T PRK00726 77 LKGVLQARKILKR-----F-KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV------------------P------ 126 (357)
T ss_pred HHHHHHHHHHHHh-----c-CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC------------------c------
Confidence 1112223333433 3 89999999632 3445567888999986421100 0
Q ss_pred cccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCCCC
Q 012613 172 EARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPA 251 (460)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~ 251 (460)
. ...++. ...++.++..+...+. . .-..++.++|........
T Consensus 127 --------------------~---~~~r~~------~~~~d~ii~~~~~~~~--------~-~~~~~i~vi~n~v~~~~~ 168 (357)
T PRK00726 127 --------------------G---LANKLL------ARFAKKVATAFPGAFP--------E-FFKPKAVVTGNPVREEIL 168 (357)
T ss_pred --------------------c---HHHHHH------HHHhchheECchhhhh--------c-cCCCCEEEECCCCChHhh
Confidence 0 000100 1122333333221110 1 001347777755433211
Q ss_pred CCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHH-HHHHHhhCCC--ceEEEEcCCcccchhhhccCchhHH
Q 012613 252 SSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLE-IAWGLANSRV--PFLWVVRPGLVREAEWLELLPTGFV 328 (460)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~~~~~~~~l~~~~~ 328 (460)
.+ +.. ..-+....++++|++..|+.. ...... +.+|+++... .+++.++.+.. +.+.+..
T Consensus 169 ---~~-~~~---~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~------~~~~~~~- 231 (357)
T PRK00726 169 ---AL-AAP---PARLAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDL------EEVRAAY- 231 (357)
T ss_pred ---cc-cch---hhhccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcH------HHHHHHh-
Confidence 00 000 011121224567776656543 222333 3366665433 34555565431 1111111
Q ss_pred HhhcCCceeeeccC-hHHhhcCCCccceeeccCchhHHHhHhcCCceeeccc----ccchhhhHHHhhhhheeeEecCC-
Q 012613 329 EMLDGRGHIVKWAP-QQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPY----LGDQMVNARYISHVWRLGLHLDG- 402 (460)
Q Consensus 329 ~~~~~~~~~~~~vp-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~- 402 (460)
+ ...++.+.+|+. ..++|+.+|+ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+ .|.|..+..
T Consensus 232 ~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~ 307 (357)
T PRK00726 232 A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQS 307 (357)
T ss_pred h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcc
Confidence 1 222357789984 4679999998 9999999999999999999999997 4689999999999 599999987
Q ss_pred ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 403 NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 403 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+++++.+.++|.++++| +.+++...+-+.++. +..+..+.++.+.+.+++
T Consensus 308 ~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 357 (357)
T PRK00726 308 DLTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELARK 357 (357)
T ss_pred cCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhhC
Confidence 78899999999999999 666655555554444 667788888888777653
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=5.2e-18 Score=163.84 Aligned_cols=314 Identities=16% Similarity=0.119 Sum_probs=182.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcc
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLN-ACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCV 94 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~-~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
+|++...+..||....+.|++.|.++||+|++++....... .....++++..++..-... ......+..+... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~ 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRR----KGSLKKLKAPFKL-L 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCC----CChHHHHHHHHHH-H
Confidence 58888889889999999999999999999999987533211 1112356666665321111 1111111111111 1
Q ss_pred hhHHHHHHHhhccCCCCCCCeeEEEECCc--chhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCccc
Q 012613 95 VPFWDCLVKLTSISNVQEDSFACIITDPL--WYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLE 172 (460)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~~pDlvi~D~~--~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 172 (460)
..+..+.+.+++ . +||+|+++.. ...+..++...++|++....... +
T Consensus 76 ~~~~~~~~~i~~-----~-~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~------------------~------- 124 (350)
T cd03785 76 KGVLQARKILKK-----F-KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV------------------P------- 124 (350)
T ss_pred HHHHHHHHHHHh-----c-CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC------------------c-------
Confidence 111222233333 3 8999998753 34456678889999986321100 0
Q ss_pred ccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCCCCC
Q 012613 173 ARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPAS 252 (460)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~ 252 (460)
. .. .+. ....++.++..+....+. . . +.++.++|........
T Consensus 125 -------------------~----~~---~~~--~~~~~~~vi~~s~~~~~~-----~-~---~~~~~~i~n~v~~~~~- 166 (350)
T cd03785 125 -------------------G----LA---NRL--LARFADRVALSFPETAKY-----F-P---KDKAVVTGNPVREEIL- 166 (350)
T ss_pred -------------------c----HH---HHH--HHHhhCEEEEcchhhhhc-----C-C---CCcEEEECCCCchHHh-
Confidence 0 00 000 112245555544332221 1 0 1346667754432111
Q ss_pred CCCcccccccchhhhccCCCCeEEEEEccCcccCCH-HHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhh
Q 012613 253 SSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDE-TEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEML 331 (460)
Q Consensus 253 ~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (460)
. +.+. ...+....++++|++..|+...... +.+..++..+.+.+..+++.++.+. .+.+.+.+.+.
T Consensus 167 --~--~~~~--~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~~~- 233 (350)
T cd03785 167 --A--LDRE--RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYEEL- 233 (350)
T ss_pred --h--hhhh--HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHhcc-
Confidence 0 0010 1222222345667676666643111 1222333344333344555665542 11122222211
Q ss_pred cCCceeeecc-ChHHhhcCCCccceeeccCchhHHHhHhcCCceeeccc----ccchhhhHHHhhhhheeeEecCC-ccC
Q 012613 332 DGRGHIVKWA-PQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPY----LGDQMVNARYISHVWRLGLHLDG-NVE 405 (460)
Q Consensus 332 ~~~~~~~~~v-p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~-~~~ 405 (460)
.+|+.+.+|+ +..++|+.+|+ +|+++|.+|+.||+.+|+|+|++|. ..+|..|+..+.+ .|.|..++. +.+
T Consensus 234 ~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~ 310 (350)
T cd03785 234 GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELT 310 (350)
T ss_pred CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCC
Confidence 3577888998 45679999998 9999999999999999999999986 4678999999999 599999987 579
Q ss_pred HHHHHHHHHHHhcc
Q 012613 406 RREIEIAVRRVMIE 419 (460)
Q Consensus 406 ~~~l~~ai~~vl~~ 419 (460)
.+++.++|.++++|
T Consensus 311 ~~~l~~~i~~ll~~ 324 (350)
T cd03785 311 PERLAAALLELLSD 324 (350)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999988
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=2.8e-16 Score=151.63 Aligned_cols=307 Identities=17% Similarity=0.153 Sum_probs=170.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhc
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPL-NACNYPHFEFHSISASLSETEASTEDMVAILIALNAKC 93 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
|||+|++.+..||+.....||++|.++||+|++++.+.... ......|++++.++..-.. .......+......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~----~~~~~~~l~~~~~~- 75 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLR----RKGSFRLIKTPLKL- 75 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcC----CCChHHHHHHHHHH-
Confidence 58999999999999988899999999999999998753221 1111146777766532111 11122222221111
Q ss_pred chhHHHHHHHhhccCCCCCCCeeEEEECCcc--hhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcc
Q 012613 94 VVPFWDCLVKLTSISNVQEDSFACIITDPLW--YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQL 171 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 171 (460)
...+..+.+.+++ . +||+|++.... ..+..++..+++|.+....... +
T Consensus 76 ~~~~~~l~~~i~~-----~-~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------~------ 125 (348)
T TIGR01133 76 LKAVFQARRILKK-----F-KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV------------------P------ 125 (348)
T ss_pred HHHHHHHHHHHHh-----c-CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC------------------c------
Confidence 1112223333433 4 89999987543 3344568888999975311000 0
Q ss_pred cccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCCCC
Q 012613 172 EARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPA 251 (460)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~ 251 (460)
....++ ..+.++.+++.+...-+ . ....++|........
T Consensus 126 -----------------------~~~~~~------~~~~~d~ii~~~~~~~~----------~--~~~~~i~n~v~~~~~ 164 (348)
T TIGR01133 126 -----------------------GLTNKL------LSRFAKKVLISFPGAKD----------H--FEAVLVGNPVRQEIR 164 (348)
T ss_pred -----------------------cHHHHH------HHHHhCeeEECchhHhh----------c--CCceEEcCCcCHHHh
Confidence 000011 11234555554332111 1 122344432211100
Q ss_pred CCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhh---CCCceEEEEcCCcccchhhhccCchhHH
Q 012613 252 SSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLAN---SRVPFLWVVRPGLVREAEWLELLPTGFV 328 (460)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 328 (460)
.+ +.. ..++....++++|.+..|+... ......+.++++. .+.++++..++... +.+.
T Consensus 165 ---~~-~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~----------~~l~ 225 (348)
T TIGR01133 165 ---SL-PVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKNDL----------EKVK 225 (348)
T ss_pred ---cc-cch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcchH----------HHHH
Confidence 00 000 1122222234455444455442 1212223344443 34456554443321 1222
Q ss_pred HhhcCC--ceeeecc--ChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccc---cchhhhHHHhhhhheeeEecC
Q 012613 329 EMLDGR--GHIVKWA--PQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYL---GDQMVNARYISHVWRLGLHLD 401 (460)
Q Consensus 329 ~~~~~~--~~~~~~v--p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~ 401 (460)
+...+. ..++.|. +..++|+.+|+ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+++ .|.|..+.
T Consensus 226 ~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~ 302 (348)
T TIGR01133 226 NVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIR 302 (348)
T ss_pred HHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEe
Confidence 111111 1222333 45679999998 99999988999999999999999863 467889999999 59999887
Q ss_pred C-ccCHHHHHHHHHHHhcc
Q 012613 402 G-NVERREIEIAVRRVMIE 419 (460)
Q Consensus 402 ~-~~~~~~l~~ai~~vl~~ 419 (460)
. +.+++.|.++|.++++|
T Consensus 303 ~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 303 QKELLPEKLLEALLKLLLD 321 (348)
T ss_pred cccCCHHHHHHHHHHHHcC
Confidence 7 67899999999999998
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.75 E-value=1.2e-16 Score=155.07 Aligned_cols=349 Identities=11% Similarity=0.003 Sum_probs=193.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CC-CCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP-LN-ACNYPHFEFHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~-~~-~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.+|++...++.||+.|. .|+++|.++|++|+|++..... .. ... .++.+..++ ...+.+.+..+. .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~-~~~~~~~l~---------v~G~~~~l~~~~-~ 73 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCE-VLYSMEELS---------VMGLREVLGRLG-R 73 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCc-cccChHHhh---------hccHHHHHHHHH-H
Confidence 57899999999999999 9999999999999998875221 11 000 122222222 111112222211 1
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEE-CCcchhHHH--HHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCC
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIIT-DPLWYFVHA--VANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDS 169 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~-D~~~~~~~~--vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (460)
....+.+..+.+++ . +||+||. |..++.... .|+.+|||++...+. -. ++
T Consensus 74 ~~~~~~~~~~~l~~-----~-kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P-~~-wa------------------- 126 (385)
T TIGR00215 74 LLKIRKEVVQLAKQ-----A-KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP-QV-WA------------------- 126 (385)
T ss_pred HHHHHHHHHHHHHh-----c-CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-cH-hh-------------------
Confidence 22233344555555 4 9999995 432222223 788999999975321 00 00
Q ss_pred cccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCC
Q 012613 170 QLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYF 249 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~ 249 (460)
|.. .+ .+.+. +.++.++..... +... + .. ...++.++|....+.
T Consensus 127 -------------w~~------~~----~r~l~------~~~d~v~~~~~~--e~~~---~-~~-~g~~~~~vGnPv~~~ 170 (385)
T TIGR00215 127 -------------WRK------WR----AKKIE------KATDFLLAILPF--EKAF---Y-QK-KNVPCRFVGHPLLDA 170 (385)
T ss_pred -------------cCc------ch----HHHHH------HHHhHhhccCCC--cHHH---H-Hh-cCCCEEEECCchhhh
Confidence 000 11 11111 122223332222 2211 1 11 124567788443221
Q ss_pred CCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCc
Q 012613 250 PASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLP 324 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~ 324 (460)
.. ...+...+..+-+.-..++++|.+--||....-......++++++.+ +.++++...... +.+ .+
T Consensus 171 ~~---~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~--~~~---~~- 241 (385)
T TIGR00215 171 IP---LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK--RRL---QF- 241 (385)
T ss_pred cc---ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--hHH---HH-
Confidence 11 00011111122222234567888888887652133444455554432 234555443321 100 00
Q ss_pred hhHHHhhcCCceeeecc-ChHHhhcCCCccceeeccCchhHHHhHhcCCceeec----cccc---------chhhhHHHh
Q 012613 325 TGFVEMLDGRGHIVKWA-PQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQ----PYLG---------DQMVNARYI 390 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~~v-p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~----P~~~---------DQ~~na~~v 390 (460)
+.+.+....+..+.-+. +...+|..+|+ +|+-+|..|+ |++.+|+|+|++ |+.. +|..|+..+
T Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil 318 (385)
T TIGR00215 242 EQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL 318 (385)
T ss_pred HHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh
Confidence 11111111122222221 33469999998 9999999888 999999999999 7642 378899999
Q ss_pred hhhheeeEecCC-ccCHHHHHHHHHHHhccc----c-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012613 391 SHVWRLGLHLDG-NVERREIEIAVRRVMIET----E-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLID 455 (460)
Q Consensus 391 ~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~----~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (460)
.++ ++..++.. +.|++.|.+.+.++|+|. + .+.+++..+++++++. +.|.+.++++.+++
T Consensus 319 ~~~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 319 ANR-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAVLE 384 (385)
T ss_pred cCC-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHhh
Confidence 995 99999887 899999999999999994 2 3455555555555554 67777888877664
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.75 E-value=5.5e-16 Score=139.37 Aligned_cols=334 Identities=15% Similarity=0.131 Sum_probs=195.8
Q ss_pred CceEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCC--Cc----cCcccHH
Q 012613 14 GKRVILFPLP--YQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACNYPHFEFHSISASLSE--TE----ASTEDMV 83 (460)
Q Consensus 14 ~~~Il~~~~~--~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~--~~----~~~~~~~ 83 (460)
.+||+|++-- +-||+..+..+|+.|++. |.+|+++++........-..|++++.+|.-... +. +...+..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~ 88 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLE 88 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHH
Confidence 4699999955 459999999999999998 999999998744444443379999999942221 22 2223333
Q ss_pred HHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCC
Q 012613 84 AILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCY 163 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
+..+.. ...+ +..+.. . +||++|+|.+-+.. -.++ .|+.- +. ...+.
T Consensus 89 e~~~~R----s~li---l~t~~~-----f-kPDi~IVd~~P~Gl---r~EL-~ptL~-----------yl-----~~~~t 135 (400)
T COG4671 89 ETKKLR----SQLI---LSTAET-----F-KPDIFIVDKFPFGL---RFEL-LPTLE-----------YL-----KTTGT 135 (400)
T ss_pred HHHHHH----HHHH---HHHHHh-----c-CCCEEEEeccccch---hhhh-hHHHH-----------HH-----hhcCC
Confidence 322221 1122 233333 4 99999999776541 1111 01100 00 00000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCc--CCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCccc
Q 012613 164 LPIQDSQLEARVIECPPLRVKDIPIFE--TGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFP 241 (460)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~ 241 (460)
.+. .. -..+++.+... .++.+...+...+ .-+.+++...|.+-.+.......+.....+.|
T Consensus 136 ~~v---------L~--lr~i~D~p~~~~~~w~~~~~~~~I~r------~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~y 198 (400)
T COG4671 136 RLV---------LG--LRSIRDIPQELEADWRRAETVRLINR------FYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRY 198 (400)
T ss_pred cce---------ee--hHhhhhchhhhccchhhhHHHHHHHH------hheEEEEecCccccChhhcCCccHhhhhheeE
Confidence 000 00 00011111000 0111122222222 23456666767665441110001111233899
Q ss_pred ccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhh-CCCc--eEEEEcCCcccchh
Q 012613 242 IGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLAN-SRVP--FLWVVRPGLVREAE 318 (460)
Q Consensus 242 vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~i~~~~~~~~~~~~ 318 (460)
+|-+ .++-. ..+.|.. | .+++.-|+||-|.-.. ..+.+...+.|... .+.+ .+++++....
T Consensus 199 tG~v-q~~~~--~~~~p~~-----~---~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP---- 262 (400)
T COG4671 199 TGFV-QRSLP--HLPLPPH-----E---APEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPFMP---- 262 (400)
T ss_pred eEEe-eccCc--CCCCCCc-----C---CCccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCCCC----
Confidence 9988 33211 0111111 1 1355788888886553 55666666666554 2433 6666665531
Q ss_pred hhccCchhHHHhhc--CCceeeeccCh-HHhhcCCCccceeeccCchhHHHhHhcCCceeecccc---cchhhhHHHhhh
Q 012613 319 WLELLPTGFVEMLD--GRGHIVKWAPQ-QEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYL---GDQMVNARYISH 392 (460)
Q Consensus 319 ~~~~l~~~~~~~~~--~~~~~~~~vp~-~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~ 392 (460)
...-..+....+ .++.+..|-.+ .+++..++. +|+-||+||++|-|.+|+|.|++|.. .||-.-|+|+++
T Consensus 263 --~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~ 338 (400)
T COG4671 263 --EAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEE 338 (400)
T ss_pred --HHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHh
Confidence 111122333333 45678888775 469988888 99999999999999999999999985 489999999999
Q ss_pred hheeeEecCC-ccCHHHHHHHHHHHhc
Q 012613 393 VWRLGLHLDG-NVERREIEIAVRRVMI 418 (460)
Q Consensus 393 ~~G~G~~l~~-~~~~~~l~~ai~~vl~ 418 (460)
+|+--.+.. +++++.++++|...++
T Consensus 339 -LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 339 -LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred -cCcceeeCcccCChHHHHHHHHhccc
Confidence 899988888 9999999999999998
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=4.8e-15 Score=144.72 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=111.0
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhC-CCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChH-HhhcC
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANS-RVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQ-EVLAH 349 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~-~ll~~ 349 (460)
++++|++.-|+... ...+..+++++.+. +.+++++.+.+.. . ...+-. ..+...+|+.+.+|+++. +++..
T Consensus 201 ~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~~-~---~~~l~~-~~~~~~~~v~~~g~~~~~~~l~~~ 273 (380)
T PRK13609 201 NKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNEA-L---KQSLED-LQETNPDALKVFGYVENIDELFRV 273 (380)
T ss_pred CCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCHH-H---HHHHHH-HHhcCCCcEEEEechhhHHHHHHh
Confidence 45777777787753 22355677777654 4566666654320 0 000111 111122567889999875 69999
Q ss_pred CCccceeeccCchhHHHhHhcCCceeec-ccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHHHHHH
Q 012613 350 PAVGGFLTHGGWNSTLESICEGVPMICQ-PYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQEMRER 428 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~ 428 (460)
+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++ .|+|+.. -+.+.+.++|.++++| +..+++
T Consensus 274 aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~---~~~~~l~~~i~~ll~~---~~~~~~ 344 (380)
T PRK13609 274 TSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI---RDDEEVFAKTEALLQD---DMKLLQ 344 (380)
T ss_pred ccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE---CCHHHHHHHHHHHHCC---HHHHHH
Confidence 998 99999988899999999999985 667777889999998 4998764 3678999999999998 443332
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 429 ILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
|++..++. ....+.++.++.+++.++
T Consensus 345 ---m~~~~~~~-~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 345 ---MKEAMKSL-YLPEPADHIVDDILAENH 370 (380)
T ss_pred ---HHHHHHHh-CCCchHHHHHHHHHHhhh
Confidence 33333221 134566777777766553
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.67 E-value=7.3e-15 Score=143.54 Aligned_cols=345 Identities=13% Similarity=0.068 Sum_probs=173.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP--LNACNYPHFEFHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~--~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|||+|...+..||+.|.. ++++|.++++++.+++..... ..... .++.++.++ ...+.+.+......
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---------~~g~~~~~~~~~~~ 70 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCE-SLFDMEELA---------VMGLVEVLPRLPRL 70 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCc-cccCHHHhh---------hccHHHHHHHHHHH
Confidence 799999999999999999 999999988888887643211 11111 122222222 11111222221111
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCc-chhH--HHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCC
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPL-WYFV--HAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDS 169 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~-~~~~--~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (460)
. ..+....+.+++ . +||+|++-.. ..+. ...+..+|||++.+......
T Consensus 71 ~-~~~~~~~~~l~~-----~-kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~---------------------- 121 (380)
T PRK00025 71 L-KIRRRLKRRLLA-----E-PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW---------------------- 121 (380)
T ss_pred H-HHHHHHHHHHHH-----c-CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh----------------------
Confidence 1 122233333444 4 8999886432 1233 33477889998875321000
Q ss_pred cccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCC
Q 012613 170 QLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYF 249 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~ 249 (460)
. .... ..+ .....++.+++.+....+. + .. ...++.++|-...+.
T Consensus 122 ------------~---------~~~~-~~~------~~~~~~d~i~~~~~~~~~~-----~-~~-~g~~~~~~G~p~~~~ 166 (380)
T PRK00025 122 ------------A---------WRQG-RAF------KIAKATDHVLALFPFEAAF-----Y-DK-LGVPVTFVGHPLADA 166 (380)
T ss_pred ------------h---------cCch-HHH------HHHHHHhhheeCCccCHHH-----H-Hh-cCCCeEEECcCHHHh
Confidence 0 0000 000 0122334445544322211 1 11 123477777333221
Q ss_pred CCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCc
Q 012613 250 PASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLP 324 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~ 324 (460)
.. ..+....+...+.-..++++|++..||...........++++++.+ +.+++++.+... ..
T Consensus 167 ~~----~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~---------~~ 233 (380)
T PRK00025 167 IP----LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK---------RR 233 (380)
T ss_pred cc----cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---------hH
Confidence 10 0011111222232223456777777765532112234455554432 335566544221 11
Q ss_pred hhHHHhhc----CCceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeeccccc--------chhhh-----H
Q 012613 325 TGFVEMLD----GRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLG--------DQMVN-----A 387 (460)
Q Consensus 325 ~~~~~~~~----~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a 387 (460)
+.+.+... -++.+.+. .-..++..+|+ +|+.+|.+++ ||+.+|+|+|++|-.. .|..| +
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (380)
T PRK00025 234 EQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLP 309 (380)
T ss_pred HHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehH
Confidence 11222111 12233221 23569999998 9999998887 9999999999985321 22222 3
Q ss_pred HHhhhhheeeEecCC-ccCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 388 RYISHVWRLGLHLDG-NVERREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 388 ~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
..+++. +++..+.. ..+++.+.++|.++++|++ .+.++++++++.+.+ ..++..+.++.+.+.+
T Consensus 310 ~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 310 NLLAGR-ELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLELL 375 (380)
T ss_pred HHhcCC-CcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHh
Confidence 445552 55555555 7899999999999999932 223333443333332 3456667777766655
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.63 E-value=2e-14 Score=133.11 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=77.2
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhC--CCceEEEEcCCcccchhhhccCchhHHHhh--cCCceeeeccChH-Hhh
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANS--RVPFLWVVRPGLVREAEWLELLPTGFVEML--DGRGHIVKWAPQQ-EVL 347 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~vp~~-~ll 347 (460)
.+.|+++||.... ......+++++.+. +.++.++++.+.. ..+.+.+.. ..|+.+..++++. ++|
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP--------NLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc--------CHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 3678999996653 22445567777654 4567777776431 112222211 2467888999986 699
Q ss_pred cCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHH
Q 012613 348 AHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARY 389 (460)
Q Consensus 348 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 389 (460)
..+|+ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=7.9e-13 Score=129.16 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=112.1
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhh-C-CCceEEEEcCCcccchhhhccCchhHHHhh--cCCceeeeccChH-H
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLAN-S-RVPFLWVVRPGLVREAEWLELLPTGFVEML--DGRGHIVKWAPQQ-E 345 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~vp~~-~ 345 (460)
+++++|++..|+... ...+..+++++.+ . +.+++++++.+. + +-+.+.+.. ..++.+.+|+++. +
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~----~----l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK----E----LKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH----H----HHHHHHHHhccCCCeEEEeccchHHH
Confidence 356788888898763 2345555555432 2 345666655431 0 111121111 2467888999765 5
Q ss_pred hhcCCCccceeeccCchhHHHhHhcCCceeec-ccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHH
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESICEGVPMICQ-PYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQE 424 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~ 424 (460)
++..+|+ +|+.+|..|+.||++.|+|+|++ |..+.|..|+..+++. |+|+... +.+++.++|.++++| +.
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~---~~ 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNG---NE 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcC---HH
Confidence 9999999 99988888999999999999999 6666677899999994 9998754 688899999999998 32
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 425 MRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
..++|++..++.. ...+.++.++.+++.++
T Consensus 341 ---~~~~m~~~~~~~~-~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 341 ---QLTNMISTMEQDK-IKYATQTICRDLLDLIG 370 (391)
T ss_pred ---HHHHHHHHHHHhc-CCCCHHHHHHHHHHHhh
Confidence 2233444444321 34567777777777664
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=5.3e-16 Score=132.85 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=96.8
Q ss_pred EEEEEccCcccC-CHHHHHHHHHHHhh--CCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccC-hHHhhcCC
Q 012613 275 VIYVSFGSVVNI-DETEFLEIAWGLAN--SRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAP-QQEVLAHP 350 (460)
Q Consensus 275 vI~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp-~~~ll~~~ 350 (460)
.|+|+.||.... -...+..+...+.. ...++++.++...... ....+ +....|+.+.+|++ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~------~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE------LKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH------HCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH------HHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 489999988652 11122223333333 2468888888763211 11111 11125678899999 67899999
Q ss_pred CccceeeccCchhHHHhHhcCCceeeccccc----chhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhcc
Q 012613 351 AVGGFLTHGGWNSTLESICEGVPMICQPYLG----DQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMIE 419 (460)
Q Consensus 351 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~ 419 (460)
|+ +|||||.||++|++..|+|+|++|... +|..||..+++ .|+|..+.. ..+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcccCCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999988 99999999999 599999988 78899999999999998
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.53 E-value=9.4e-12 Score=121.01 Aligned_cols=362 Identities=14% Similarity=0.069 Sum_probs=194.6
Q ss_pred CCCccCHHHHHHHHHHHHh--CCCeEE---EEeCCCCCCCC-CCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHH-hcc
Q 012613 22 LPYQGHINPMLQIASVLYS--KGFSIT---IIHTNLNPLNA-CNYPHFEFHSISASLSETEASTEDMVAILIALNA-KCV 94 (460)
Q Consensus 22 ~~~~GH~~p~~~La~~L~~--rGh~V~---~~~~~~~~~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (460)
+-++|-=.-.+.||++|.+ .|++|. ++++....+.. ....| .+..+| .+-.........+..... ...
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~----sgg~~~~~~~~~~~~~~~gl~~ 78 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELP----SGGFSYQSLRGLLRDLRAGLVG 78 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCC----CCCccCCCHHHHHHHHHhhHHH
Confidence 4456667788999999998 599999 99887333211 11122 333333 333334445555555444 333
Q ss_pred hhHH--HHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCccc
Q 012613 95 VPFW--DCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLE 172 (460)
Q Consensus 95 ~~l~--~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 172 (460)
..+. ..++++.+ +||+|++-.-+. +..+|..+|+|++.+.+.-...... ..+. ...+.++
T Consensus 79 ~~~~~~~~~~~~~~-------~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~-------~~~~---~~~~~~~ 140 (396)
T TIGR03492 79 LTLGQWRALRKWAK-------KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWE-------SGPR---RSPSDEY 140 (396)
T ss_pred HHHHHHHHHHHHhh-------cCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeec-------CCCC---Cccchhh
Confidence 3332 35666655 899999876655 7889999999999965431110000 0000 0001111
Q ss_pred ccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCCCCC
Q 012613 173 ARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPAS 252 (460)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~ 252 (460)
.+.++.. +..+ .+..-..+.++.++..+..+ .. .+ .. .+.++.++|-...+.-.
T Consensus 141 ~~~~G~~-----------------~~p~-e~n~l~~~~a~~v~~~~~~t--~~---~l-~~-~g~k~~~vGnPv~d~l~- 194 (396)
T TIGR03492 141 HRLEGSL-----------------YLPW-ERWLMRSRRCLAVFVRDRLT--AR---DL-RR-QGVRASYLGNPMMDGLE- 194 (396)
T ss_pred hccCCCc-----------------cCHH-HHHHhhchhhCEEeCCCHHH--HH---HH-HH-CCCeEEEeCcCHHhcCc-
Confidence 2212210 1111 11111223455555544222 11 11 21 12469999944433211
Q ss_pred CCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhC----CCceEEEEcCCcccchhhhccCch-hH
Q 012613 253 SSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANS----RVPFLWVVRPGLVREAEWLELLPT-GF 327 (460)
Q Consensus 253 ~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~l~~-~~ 327 (460)
.... .-+ .+++++|.+--||........+..++++++.+ +..+++.+.++.. .......+.+ ++
T Consensus 195 -----~~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~-~~~~~~~l~~~g~ 263 (396)
T TIGR03492 195 -----PPER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS-LEKLQAILEDLGW 263 (396)
T ss_pred -----cccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-HHHHHHHHHhcCc
Confidence 0010 011 12457888888988653333444555555543 5567777733220 0000000000 11
Q ss_pred HH---------hh-cCCceeeeccC-hHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhh--
Q 012613 328 VE---------ML-DGRGHIVKWAP-QQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVW-- 394 (460)
Q Consensus 328 ~~---------~~-~~~~~~~~~vp-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~-- 394 (460)
.. .. ..++.+..+.. ..+++..+|+ +|+-+|..| .|+...|+|+|++|....|. |+...++ .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~ 338 (396)
T TIGR03492 264 QLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSR 338 (396)
T ss_pred eecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHh
Confidence 00 00 01234445544 3569999998 999999766 99999999999999877776 8877776 3
Q ss_pred --eeeEecCCccCHHHHHHHHHHHhccccHHHHHHHHH-HHHHHHHHhhcCCCChHHHHHHHHHH
Q 012613 395 --RLGLHLDGNVERREIEIAVRRVMIETEGQEMRERIL-YSKEKAHLCLKPGGSSYQSLERLIDH 456 (460)
Q Consensus 395 --G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (460)
|.++.+.. .+.+.|.+++.++++| +..+++.. ..++.+. ..+.+.+.++.+.+.
T Consensus 339 l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~lg----~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 339 LLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCRRNGQERMG----PPGASARIAESILKQ 395 (396)
T ss_pred hcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHh
Confidence 66666654 4559999999999998 54443333 2333333 556666666655543
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.48 E-value=2.3e-10 Score=110.55 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=79.5
Q ss_pred cCCceeeeccChHH---hhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCcc
Q 012613 332 DGRGHIVKWAPQQE---VLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNV 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 404 (460)
..|+.+.+|+++.+ ++..+|+ +|+.+. .+++.||+++|+|+|+.+.. .+...+++ .+.|..... -
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~-~ 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEP-G 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCC-C
Confidence 35668899998765 8999998 887764 36899999999999988754 35666777 488887765 5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 405 ERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 405 ~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
+.+++.++|.++++| +..+++..+-+.+.. +..+.++.++++++.+
T Consensus 318 ~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 DAEAFAAALAALLAD---PELRRRMAARARAEA----ERRSWEAFLDNLLEAY 363 (364)
T ss_pred CHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----hhcCHHHHHHHHHHhh
Confidence 778899999999998 333322222222221 3456778888887765
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.47 E-value=2.7e-10 Score=114.21 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=96.5
Q ss_pred eEEEEEccCcccCCHHHHHHHHHHHhhC-CCceEEEEcCCcccchhhhccCchhHHHhhc-CCceeeeccChHH---hhc
Q 012613 274 SVIYVSFGSVVNIDETEFLEIAWGLANS-RVPFLWVVRPGLVREAEWLELLPTGFVEMLD-GRGHIVKWAPQQE---VLA 348 (460)
Q Consensus 274 ~vI~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~vp~~~---ll~ 348 (460)
..+++..|+.. ..+.+..++++++.. +.+++++ +++. ..+.+.+... .++.+.+++++.+ ++.
T Consensus 263 ~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 263 KPLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred CeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHH
Confidence 34555668775 334566677888765 4455544 4321 1122222211 4678889998654 888
Q ss_pred CCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhh---hheeeEecCCccCHHHHHHHHHHHhcccc
Q 012613 349 HPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISH---VWRLGLHLDGNVERREIEIAVRRVMIETE 421 (460)
Q Consensus 349 ~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~l~~~~~~~~l~~ai~~vl~~~~ 421 (460)
.+|+ +|.-.. -.++.||+++|+|+|+.... .....+++ . +.|..++. -+.+++.++|.++++|++
T Consensus 331 ~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 331 SGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLADPE 402 (465)
T ss_pred HCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhCHH
Confidence 9998 885443 34688999999999987653 23344444 4 77877765 478899999999999832
Q ss_pred -HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012613 422 -GQEMRERILYSKEKAHLCLKPGGSSYQSLERLID 455 (460)
Q Consensus 422 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (460)
...+.+++++..+ ..+.+..++++.+
T Consensus 403 ~~~~~~~~a~~~~~--------~fsw~~~a~~l~~ 429 (465)
T PLN02871 403 LRERMGAAAREEVE--------KWDWRAATRKLRN 429 (465)
T ss_pred HHHHHHHHHHHHHH--------hCCHHHHHHHHHH
Confidence 2334444444332 2457777777765
No 45
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=2.6e-11 Score=118.29 Aligned_cols=164 Identities=14% Similarity=0.134 Sum_probs=105.2
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhh---------CCCceEEEEcCCcccchhhhccCchhHHHh-hcCCceeeec
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLAN---------SRVPFLWVVRPGLVREAEWLELLPTGFVEM-LDGRGHIVKW 340 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 340 (460)
+++++|.+.-|+.... .+..+++++.. .+.+++++++.+. + +-+.+.+. ...++.+.+|
T Consensus 204 ~~~~~il~~Gg~~g~~---~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~----~----~~~~L~~~~~~~~v~~~G~ 272 (382)
T PLN02605 204 EDLPAVLLMGGGEGMG---PLEETARALGDSLYDKNLGKPIGQVVVICGRNK----K----LQSKLESRDWKIPVKVRGF 272 (382)
T ss_pred CCCcEEEEECCCcccc---cHHHHHHHHHHhhccccccCCCceEEEEECCCH----H----HHHHHHhhcccCCeEEEec
Confidence 4567777766665532 23333333332 2345666776542 0 11111111 1235678899
Q ss_pred cChH-HhhcCCCccceeeccCchhHHHhHhcCCceeecccccchh-hhHHHhhhhheeeEecCCccCHHHHHHHHHHHhc
Q 012613 341 APQQ-EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQM-VNARYISHVWRLGLHLDGNVERREIEIAVRRVMI 418 (460)
Q Consensus 341 vp~~-~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~ 418 (460)
+++. ++|..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -+++.+.++|.++++
T Consensus 273 ~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la~~i~~ll~ 346 (382)
T PLN02605 273 VTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIARIVAEWFG 346 (382)
T ss_pred cccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHHHHHHHHHc
Confidence 9865 59999998 999999999999999999999998777775 699999984 999765 478999999999998
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 419 ETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
|. .+..++|++..++. ....+..+.++.+.+.+
T Consensus 347 ~~-----~~~~~~m~~~~~~~-~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 347 DK-----SDELEAMSENALKL-ARPEAVFDIVHDLHELV 379 (382)
T ss_pred CC-----HHHHHHHHHHHHHh-cCCchHHHHHHHHHHHh
Confidence 71 12223333333321 13444566666665554
No 46
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.39 E-value=1.9e-09 Score=106.53 Aligned_cols=166 Identities=10% Similarity=0.056 Sum_probs=95.7
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhC----CCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHH---
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANS----RVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQE--- 345 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~--- 345 (460)
++.+++..|+... .+.+..+++|++.+ +.+++ .+|.+. .. ..+-+-+.+..-+|+.+.+|+|+.+
T Consensus 228 ~~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~-~~----~~l~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 228 GKKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGG-GK----ARLEKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred CCEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCCh-hH----HHHHHHHHHcCCCceEEeCCCCHHHHHH
Confidence 3456666787753 34455566666543 22333 344322 00 0011111111114678889998754
Q ss_pred hhcCCCccceeeccCc------hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 346 VLAHPAVGGFLTHGGW------NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
++..+|+-++.+..+. +.+.|++.+|+|+|+....+.. ....++ +.|..++. -+.+++.++|.++++|
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAALARQ 373 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHHHHhC
Confidence 7889998433333321 2368999999999998754321 112222 45666655 4789999999999988
Q ss_pred cc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 420 TE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 420 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
++ ...+.+++++.. .+.-+.+..++++++.+++
T Consensus 374 ~~~~~~~~~~a~~~~-------~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 374 ALLRPKLGTVAREYA-------ERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HHHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHHH
Confidence 32 233444444433 2445678888888887765
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=6.3e-11 Score=103.94 Aligned_cols=143 Identities=14% Similarity=0.181 Sum_probs=104.8
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhc--CCceeeeccC-hHHhhc
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLD--GRGHIVKWAP-QQEVLA 348 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~vp-~~~ll~ 348 (460)
++.-|+|++|..- .......++..+.+..+.+-+++++.. +.+.+...+.. .|+.+.-... ...|+.
T Consensus 157 ~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~--------p~l~~l~k~~~~~~~i~~~~~~~dma~LMk 226 (318)
T COG3980 157 PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN--------PTLKNLRKRAEKYPNINLYIDTNDMAELMK 226 (318)
T ss_pred chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC--------cchhHHHHHHhhCCCeeeEecchhHHHHHH
Confidence 4567999999653 334556688888877766666776432 12223322222 3445444444 345999
Q ss_pred CCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHHHHHH
Q 012613 349 HPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQEMRER 428 (460)
Q Consensus 349 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~ 428 (460)
.|++ .|+-||. |++|++..|+|.+++|+...|---|...+. +|+-..+...++.+.+...+.++.+| ...|++
T Consensus 227 e~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~ 299 (318)
T COG3980 227 EADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKN 299 (318)
T ss_pred hcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhh
Confidence 9998 9988886 999999999999999999999999999999 69888887678888999999999999 555555
Q ss_pred HHH
Q 012613 429 ILY 431 (460)
Q Consensus 429 a~~ 431 (460)
.-.
T Consensus 300 l~~ 302 (318)
T COG3980 300 LSF 302 (318)
T ss_pred hhh
Confidence 443
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.35 E-value=2.4e-09 Score=104.21 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=79.1
Q ss_pred CCceeeeccChH-HhhcCCCccceeec----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 333 GRGHIVKWAPQQ-EVLAHPAVGGFLTH----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 333 ~~~~~~~~vp~~-~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
+++.+.++.++. .++..+++ +|.- |.-.++.||+.+|+|+|+... ...+..+++. ..|...+. -+.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-GDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-CCHH
Confidence 456777877753 58989888 7733 334599999999999999643 4566777773 67766665 4789
Q ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 408 EIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 408 ~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
++.++|.++++|+. ...+++++++. +. +.-+.+..++++.+.++++
T Consensus 325 ~l~~~i~~l~~~~~~~~~~~~~~~~~---~~----~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 325 AMAEYALSLLEDDELWQEFSRAARNR---AA----ERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHH---HH----HhCCHHHHHHHHHHHHHhC
Confidence 99999999998832 22333444333 12 4456888889998888764
No 49
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.33 E-value=3.4e-13 Score=111.77 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=79.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCC--CCCCccCcccHHHHHHH--HHHh
Q 012613 17 VILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISAS--LSETEASTEDMVAILIA--LNAK 92 (460)
Q Consensus 17 Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~ 92 (460)
|+|.+.|+.||++|+++||++|++|||+|++++++........ .|+.|++++.. +.........+...... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-AGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEE 79 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-TT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-cCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhH
Confidence 7899999999999999999999999999999999755544433 79999999866 11000011111111111 1111
Q ss_pred cchhHHHHHHHhh-ccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHH
Q 012613 93 CVVPFWDCLVKLT-SISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVS 147 (460)
Q Consensus 93 ~~~~l~~~l~~l~-~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~ 147 (460)
....+.+...+.. . ..+...+|+++.+.....+..+|++++||++.....+..
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 80 AMRILARFRPDLVVA--AGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHCCCCH--CTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHHhhccCcchhhh--ccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 2222222211111 1 011116788888988888999999999999998776543
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.33 E-value=2.5e-09 Score=103.00 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhC---CCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHH---
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANS---RVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQE--- 345 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~--- 345 (460)
+++.+++..|+... .+....++++++.+ +.++++. +...... ..........++.+.+++++.+
T Consensus 189 ~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~~-------~~~~~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 189 GGRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGLELE-------EESYELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CCceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCchhhh-------HHHHhhcCCCeEEEeCCCCHHHHHH
Confidence 44566777788754 23344455555443 3444444 3322100 0000001235678889997654
Q ss_pred hhcCCCccceeec----cCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 346 VLAHPAVGGFLTH----GGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 346 ll~~~~~~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
++..+++ +|+. .|. .++.||+++|+|+|+.+. ..+...+.+. +.|..++. -+.+++.+++.++++|
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDD 329 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhC
Confidence 6889888 7742 333 479999999999998764 4466677773 67877776 4589999999999998
No 51
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.32 E-value=5.8e-09 Score=102.48 Aligned_cols=79 Identities=19% Similarity=0.173 Sum_probs=60.5
Q ss_pred CCceeeeccChHH---hhcCCCccceee---ccCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQQE---VLAHPAVGGFLT---HGGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~~---ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
+++.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+.. .......+.+. ..|..++. -+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC-CC
Confidence 5678889999765 7788888 664 2333 37999999999999864 34566667663 67776665 57
Q ss_pred HHHHHHHHHHHhcc
Q 012613 406 RREIEIAVRRVMIE 419 (460)
Q Consensus 406 ~~~l~~ai~~vl~~ 419 (460)
++++.++|.++++|
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999998
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.32 E-value=6.5e-09 Score=100.62 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCceeeeccChHH---hhcCCCccceeecc----CchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQQE---VLAHPAVGGFLTHG----GWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~~---ll~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
+++.+.+++|+.+ ++..+++ +|..+ ...++.||+++|+|+|+... ...+..+++. +.|..++. -+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~~ 330 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-GD 330 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-CC
Confidence 5678889998764 7888888 77443 34689999999999998653 4466777773 78887776 12
Q ss_pred HHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Q 012613 406 RREIEIAVRRVMIETE-GQEMRERILYSKEK 435 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~ 435 (460)
. ++.+++.+++++++ .+.+.+++++..+.
T Consensus 331 ~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 331 E-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred H-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2 89999999999843 23455555544444
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.32 E-value=2.1e-09 Score=104.54 Aligned_cols=332 Identities=14% Similarity=0.061 Sum_probs=163.3
Q ss_pred eEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--------CCCCeEEEEcCCCCCCCccCcccHH
Q 012613 16 RVILFPLP----YQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC--------NYPHFEFHSISASLSETEASTEDMV 83 (460)
Q Consensus 16 ~Il~~~~~----~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~--------~~~gi~~~~~~~~~~~~~~~~~~~~ 83 (460)
||++++.. ..|+-.....++++|+++||+|++++......... ...++++..++...... .....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 77 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK---NGLLK 77 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc---cchHH
Confidence 45555533 24899999999999999999999998753332221 12466666665322211 11111
Q ss_pred HHHHHHHHhcchhHHHHHHHhh--ccCCCCCCCeeEEEECCcc----hhHHHHHHHcCCCeEEEeCccHHHHHHHHhchh
Q 012613 84 AILIALNAKCVVPFWDCLVKLT--SISNVQEDSFACIITDPLW----YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPI 157 (460)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~--~~~~~~~~~pDlvi~D~~~----~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~ 157 (460)
..... .... ......+. . . +||+|++.... ..+..++...++|++............
T Consensus 78 ~~~~~-~~~~----~~~~~~~~~~~-----~-~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------ 140 (394)
T cd03794 78 RLLNY-LSFA----LSALLALLKRR-----R-RPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAV------ 140 (394)
T ss_pred HHHhh-hHHH----HHHHHHHHhcc-----c-CCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHH------
Confidence 11111 1111 11111121 2 3 89999998622 222345666799998864321100000
Q ss_pred hhhcCCCCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHH-HHhhhccccEEEEcCchhccHHHHHHhhhhcCC
Q 012613 158 LREKCYLPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISA-MVSLIKASSGIIWNSYRELEQVELTTIHHQYFS 236 (460)
Q Consensus 158 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~ 236 (460)
..... ............ .......++.++..+....+.- .. ...+
T Consensus 141 --~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~--~~---~~~~ 186 (394)
T cd03794 141 --ALGLL---------------------------KNGSLLYRLLRKLERLIYRRADAIVVISPGMREYL--VR---RGVP 186 (394)
T ss_pred --HccCc---------------------------cccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHH--Hh---cCCC
Confidence 00000 000000111111 1223456777777665544322 10 1111
Q ss_pred -CCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCccc-CCHHHHHHHHHHHhhC-CCceEEEEcCCc
Q 012613 237 -IPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVN-IDETEFLEIAWGLANS-RVPFLWVVRPGL 313 (460)
Q Consensus 237 -~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~ 313 (460)
.++..+......... .+........... ...++.+++..|+... .....+..++..+.+. +.++++ ++.+.
T Consensus 187 ~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~ 260 (394)
T cd03794 187 PEKISVIPNGVDLELF---KPPPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGP 260 (394)
T ss_pred cCceEEcCCCCCHHHc---CCccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcc
Confidence 224444322221110 0000000001111 1244677777888764 2223333333333333 334333 34322
Q ss_pred ccchhhhccCchhHHHhhcCCceeeeccChHH---hhcCCCccceeeccC---------chhHHHhHhcCCceeeccccc
Q 012613 314 VREAEWLELLPTGFVEMLDGRGHIVKWAPQQE---VLAHPAVGGFLTHGG---------WNSTLESICEGVPMICQPYLG 381 (460)
Q Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~---ll~~~~~~~~I~HGG---------~gs~~eal~~GvP~v~~P~~~ 381 (460)
. . ..+.+.+......|+.+.+++++.+ ++..+++ +|.... -+++.||+.+|+|+|+.+..+
T Consensus 261 ~-~----~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~ 333 (394)
T cd03794 261 E-K----EELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE 333 (394)
T ss_pred c-H----HHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCC
Confidence 0 0 0111111122235678889998654 7888888 775433 234799999999999988765
Q ss_pred chhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccc
Q 012613 382 DQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 382 DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 420 (460)
.+. .+.+ .+.|..++. -+.+++.++|.++++|+
T Consensus 334 ~~~----~~~~-~~~g~~~~~-~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 334 SAE----LVEE-AGAGLVVPP-GDPEALAAAILELLDDP 366 (394)
T ss_pred chh----hhcc-CCcceEeCC-CCHHHHHHHHHHHHhCh
Confidence 443 3344 256666655 47899999999999883
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.27 E-value=1.1e-08 Score=100.83 Aligned_cols=345 Identities=15% Similarity=0.140 Sum_probs=173.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC--CCCCCeEEEEcCCCCCCCccCcccHHHHHHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNA--CNYPHFEFHSISASLSETEASTEDMVAILIALN 90 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~--~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
+.+||++++..-.|+-..+..+|++|+++||+|++++........ ....++..+.++..- .. ......++....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~-~~---~~~~~~~~~~~~ 77 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPP-QR---LNKLPFLLFAPL 77 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCc-cc---cccchHHHHHHH
Confidence 357888888877788888899999999999999999875332211 233678888876321 00 111112221111
Q ss_pred HhcchhHHHHHHHhhccCCCCCCCeeEEEECCcc-----hhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCC
Q 012613 91 AKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW-----YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLP 165 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~-----~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 165 (460)
.... .+..++..+.. . . +||+|++.... ..+..++...++|.|+......... ... ..
T Consensus 78 ~~~~-~~~~~~~~l~~---~-~-~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~--~~~-------~~-- 140 (415)
T cd03816 78 KVLW-QFFSLLWLLYK---L-R-PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI--LAL-------KL-- 140 (415)
T ss_pred HHHH-HHHHHHHHHHh---c-C-CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH--Hhc-------cc--
Confidence 1111 11122222222 0 3 79999975322 1233456667999887543211100 000 00
Q ss_pred CCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhh-hccccEEEEcCchhccHHHHHHhhhhcCCCC--cccc
Q 012613 166 IQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSL-IKASSGIIWNSYRELEQVELTTIHHQYFSIP--VFPI 242 (460)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~le~~~~~~~~~~~~~~p--v~~v 242 (460)
................ .+.++.++..+...-+.- .+ . .- .+.+ +++-
T Consensus 141 --------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l-~~-~-~~-~~~ki~vI~N 190 (415)
T cd03816 141 --------------------------GENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDL-QQ-F-NN-WKIRATVLYD 190 (415)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHH-Hh-h-hc-cCCCeeecCC
Confidence 0001111111111112 245677777665533321 11 1 00 0122 3443
Q ss_pred cccccCCCCCCCCcccccccchhhh----------------ccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhC-----
Q 012613 243 GPFHKYFPASSSSLLSQDESCISWL----------------DKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANS----- 301 (460)
Q Consensus 243 Gpl~~~~~~~~~~~~~~~~~l~~~l----------------~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~----- 301 (460)
|+.. .. .+.+....-..+. ...+++..++++.|.... .+.+..+++|++.+
T Consensus 191 g~~~-~f-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~~~~~ 262 (415)
T cd03816 191 RPPE-QF-----RPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYEKSAA 262 (415)
T ss_pred CCHH-Hc-----eeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHHHhhc
Confidence 4211 00 0011000000111 001234556666677653 33444555555432
Q ss_pred ------CCceEEEEcCCcccchhhhccCchhHHHhhc-CCceee-eccChHH---hhcCCCccceee-c---cC---chh
Q 012613 302 ------RVPFLWVVRPGLVREAEWLELLPTGFVEMLD-GRGHIV-KWAPQQE---VLAHPAVGGFLT-H---GG---WNS 363 (460)
Q Consensus 302 ------~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~vp~~~---ll~~~~~~~~I~-H---GG---~gs 363 (460)
+.++ +.+|++.. ...+-+.+. +.. +|+.+. +|+|..+ +|..+|+ +|. + -| -++
T Consensus 263 ~~~~~~~i~l-~ivG~G~~-----~~~l~~~~~-~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~ 333 (415)
T cd03816 263 TGPKLPKLLC-IITGKGPL-----KEKYLERIK-ELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMK 333 (415)
T ss_pred ccccCCCEEE-EEEecCcc-----HHHHHHHHH-HcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHH
Confidence 1233 33343220 011111121 111 344544 6888654 7889998 663 1 12 347
Q ss_pred HHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc---cc-HHHHHHHHHHHH
Q 012613 364 TLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE---TE-GQEMRERILYSK 433 (460)
Q Consensus 364 ~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~---~~-~~~~~~~a~~~~ 433 (460)
+.||+++|+|+|+... ......+++. +.|..+. +.+++.++|.++++| ++ ...|.+++++..
T Consensus 334 ~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 334 VVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9999999999999654 3566777774 7887773 789999999999998 33 556666666655
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.25 E-value=2.5e-08 Score=96.02 Aligned_cols=342 Identities=15% Similarity=0.051 Sum_probs=176.1
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchhHHHHHHH
Q 012613 25 QGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNY-PHFEFHSISASLSETEASTEDMVAILIALNAKCVVPFWDCLVK 103 (460)
Q Consensus 25 ~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (460)
.|+-..+..+++.|.+.||+|++++........... ........ . ........ ..... ........
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~-~~~~~---~~~~~~~~ 80 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP-------P--PLLRVRRL-LLLLL---LALRLRRL 80 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecC-------C--cccccchh-HHHHH---HHHHHHHH
Confidence 689999999999999999999999986333221110 00000000 0 00000000 00000 01112222
Q ss_pred hhccCCCCCCCeeEEEECCcchhHH--HHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcccccccCCCCC
Q 012613 104 LTSISNVQEDSFACIITDPLWYFVH--AVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLEARVIECPPL 181 (460)
Q Consensus 104 l~~~~~~~~~~pDlvi~D~~~~~~~--~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 181 (460)
+.. . ++|+|++........ ..+...++|++........... . .
T Consensus 81 ~~~-----~-~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----------~-------~----------- 125 (374)
T cd03801 81 LRR-----E-RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP-----------G-------N----------- 125 (374)
T ss_pred hhh-----c-CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc-----------c-------c-----------
Confidence 222 3 799999887764444 4788889999886543211000 0 0
Q ss_pred CCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCC---CcccccccccCCCCCCCCccc
Q 012613 182 RVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSI---PVFPIGPFHKYFPASSSSLLS 258 (460)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~---pv~~vGpl~~~~~~~~~~~~~ 258 (460)
...................++.+++.+....+.- ...+.. ++..++........ .+.+
T Consensus 126 ----------~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~---~~~~ 186 (374)
T cd03801 126 ----------ELGLLLKLARALERRALRRADRIIAVSEATREEL------RELGGVPPEKITVIPNGVDTERF---RPAP 186 (374)
T ss_pred ----------chhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHH------HhcCCCCCCcEEEecCccccccc---Cccc
Confidence 0000001111122333456677777776544432 332222 34444432221110 0000
Q ss_pred ccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCchhH-HHhhc
Q 012613 259 QDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLPTGF-VEMLD 332 (460)
Q Consensus 259 ~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~ 332 (460)
.....-. ....++..++.+|+... ...+..+++++... +.++++ ++... .. ..+-.-+ .....
T Consensus 187 --~~~~~~~-~~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i-~G~~~-~~----~~~~~~~~~~~~~ 255 (374)
T cd03801 187 --RAARRRL-GIPEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVI-VGDGP-LR----EELEALAAELGLG 255 (374)
T ss_pred --hHHHhhc-CCcCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEE-EeCcH-HH----HHHHHHHHHhCCC
Confidence 0000111 11234566777787653 33344455555433 223333 33221 00 0010100 01123
Q ss_pred CCceeeeccChH---HhhcCCCccceee----ccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQQ---EVLAHPAVGGFLT----HGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~---~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
.++.+.+++++. .++..+++ +|+ -|..+++.||+.+|+|+|+.+. ......+++. +.|...+. .+
T Consensus 256 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~~ 327 (374)
T cd03801 256 DRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-GD 327 (374)
T ss_pred cceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-CC
Confidence 567888999754 48888888 774 3556799999999999998765 4566777763 78877766 46
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 406 RREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
++++.++|.++++|++ .+++..++.++... +.-+.++.++++++.++
T Consensus 328 ~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 328 PEALAEAILRLLDDPE--LRRRLGEAARERVA----ERFSWDRVAARTEEVYY 374 (374)
T ss_pred HHHHHHHHHHHHcChH--HHHHHHHHHHHHHH----HhcCHHHHHHHHHHhhC
Confidence 8999999999999832 22333333332333 45668888888877653
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.25 E-value=6.3e-09 Score=102.20 Aligned_cols=326 Identities=14% Similarity=0.095 Sum_probs=162.5
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC---CCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchhHHHHH
Q 012613 25 QGHINPMLQIASVLYSKGFSITIIHTNLNPLN---ACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVVPFWDCL 101 (460)
Q Consensus 25 ~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~---~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 101 (460)
.|.-..+..|+++|+++||+|++++....... .....++.++.++..-. ..............+ ...+.
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~ 92 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPA-EYLPKEELWPYLDEF-------ADDLL 92 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccc-cCCChhhcchhHHHH-------HHHHH
Confidence 47888999999999999999999986433221 11225677776653111 111111111111111 11122
Q ss_pred HHhhccCCCCCCCeeEEEECCcc--hhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcccccccCCC
Q 012613 102 VKLTSISNVQEDSFACIITDPLW--YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLEARVIECP 179 (460)
Q Consensus 102 ~~l~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 179 (460)
..+.. .. . +||+|++.... ..+..+++.+++|++........ .. . ....
T Consensus 93 ~~~~~--~~-~-~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~--------------~~-------~----~~~~ 143 (398)
T cd03800 93 RFLRR--EG-G-RPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGA--------------VK-------R----RHLG 143 (398)
T ss_pred HHHHh--cC-C-CccEEEEecCccchHHHHHHhhcCCceEEEeecccc--------------cC-------C----cccc
Confidence 22222 11 2 79999987543 34556788999998874322000 00 0 0000
Q ss_pred CCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCcccccccccCCCCCCCCcccc
Q 012613 180 PLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPASSSSLLSQ 259 (460)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~ 259 (460)
.. . . ................++.++..+....+.- ... ......++..+.+-...... .+...
T Consensus 144 ~~-~--------~--~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~--~~~-~~~~~~~~~vi~ng~~~~~~---~~~~~ 206 (398)
T cd03800 144 AA-D--------T--YEPARRIEAEERLLRAADRVIASTPQEAEEL--YSL-YGAYPRRIRVVPPGVDLERF---TPYGR 206 (398)
T ss_pred cc-c--------c--cchhhhhhHHHHHHhhCCEEEEcCHHHHHHH--HHH-ccccccccEEECCCCCccce---ecccc
Confidence 00 0 0 0001111111223456777777776543321 110 00001123333322211100 00000
Q ss_pred cccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCchh---HHHh-
Q 012613 260 DESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLPTG---FVEM- 330 (460)
Q Consensus 260 ~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~---~~~~- 330 (460)
.......... ..+..+++..|+... ......+++++... +.+++++.++..... ...... +.+.
T Consensus 207 ~~~~~~~~~~-~~~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~----~~~~~~~~~~~~~~ 279 (398)
T cd03800 207 AEARRARLLR-DPDKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDIL----AMDEEELRELAREL 279 (398)
T ss_pred hhhHHHhhcc-CCCCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcch----hhhhHHHHHHHHhc
Confidence 0000111111 233566677788753 22334444555432 344555543322100 000011 1111
Q ss_pred -hcCCceeeeccChHH---hhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC
Q 012613 331 -LDGRGHIVKWAPQQE---VLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG 402 (460)
Q Consensus 331 -~~~~~~~~~~vp~~~---ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 402 (460)
...|+.+.+|+|+.+ ++..+++ +|+.+- -.++.||+++|+|+|+.... .....+++ .+.|..++.
T Consensus 280 ~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~-~~~g~~~~~ 352 (398)
T cd03800 280 GVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVD-GVTGLLVDP 352 (398)
T ss_pred CCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccC-CCCeEEeCC
Confidence 124678889999765 6888888 775432 35899999999999987643 35666777 378887766
Q ss_pred ccCHHHHHHHHHHHhcc
Q 012613 403 NVERREIEIAVRRVMIE 419 (460)
Q Consensus 403 ~~~~~~l~~ai~~vl~~ 419 (460)
-+.+++.++|.+++++
T Consensus 353 -~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 353 -RDPEALAAALRRLLTD 368 (398)
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 4689999999999988
No 57
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.19 E-value=8.2e-08 Score=94.70 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred CCceeeeccChH---HhhcCCCccceee---ccCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQQ---EVLAHPAVGGFLT---HGGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~---~ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
+++.+.+++|+. ++|..+|+ +|. +.|. .++.||+++|+|+|+.... .....+++ .+.|..++. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~-~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDG-HD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCC-CC
Confidence 567888999865 48999998 764 2333 4899999999999997643 34556666 377877765 47
Q ss_pred HHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 406 RREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.+++.++|.+++++++ .+.+++++++.. +.-+.+..++++++.+.+
T Consensus 355 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~--------~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 355 PADWADALARLLDDPRTRIRMGAAAVEHA--------AGFSWAATADGLLSSYRD 401 (405)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHH
Confidence 8999999999999832 233444444332 235688888888887754
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.19 E-value=9.6e-08 Score=91.68 Aligned_cols=314 Identities=13% Similarity=0.095 Sum_probs=161.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcch
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVV 95 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
||++++....|+......++++|.++||+|++++............++++..++.... .......+..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------- 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-----GINPFKDLKA------- 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-----ccChHhHHHH-------
Confidence 4677776677899999999999999999999998864443222225677777663221 0111111111
Q ss_pred hHHHHHHHhhccCCCCCCCeeEEEECCcch--hHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcccc
Q 012613 96 PFWDCLVKLTSISNVQEDSFACIITDPLWY--FVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLEA 173 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~--~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 173 (460)
+..+.+.+.+ . +||+|++..... .+..++...+.|.+...........
T Consensus 69 -~~~~~~~~~~-----~-~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------- 118 (359)
T cd03808 69 -LLRLYRLLRK-----E-RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF----------------------- 118 (359)
T ss_pred -HHHHHHHHHh-----c-CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-----------------------
Confidence 1122333333 3 899999875442 2334455466665554322110000
Q ss_pred cccCCCCCCCCCCCCCcCCCCCcHHHHHHHH-HhhhccccEEEEcCchhccHHHHHHhhhhcCC---CCcccccccccCC
Q 012613 174 RVIECPPLRVKDIPIFETGDPKNVDKVISAM-VSLIKASSGIIWNSYRELEQVELTTIHHQYFS---IPVFPIGPFHKYF 249 (460)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~---~pv~~vGpl~~~~ 249 (460)
.........+... ......++.++..+....+.- ..... ...+.+.+...+.
T Consensus 119 ------------------~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 174 (359)
T cd03808 119 ------------------TSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLA------LKLGIIKKKKTVLIPGSGVDL 174 (359)
T ss_pred ------------------ccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHH------HHhcCCCcCceEEecCCCCCh
Confidence 0000011111111 112345567777665544322 11111 1222222222211
Q ss_pred CCCCCCcccccccchhhhccCCCCeEEEEEccCccc-CCHHHHHHHHHHHhhC--CCceEEEEcCCcccchhhhccCchh
Q 012613 250 PASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVN-IDETEFLEIAWGLANS--RVPFLWVVRPGLVREAEWLELLPTG 326 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~ 326 (460)
.. ..... .. ..+++.+++..|+... ...+.+-..+..+.+. +.+++++ +...... . ....
T Consensus 175 ~~-----~~~~~--~~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~~~~-~----~~~~ 237 (359)
T cd03808 175 DR-----FSPSP--EP----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDGDEEN-P----AAIL 237 (359)
T ss_pred hh-----cCccc--cc----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCCcch-h----hHHH
Confidence 10 00000 00 1244677888888754 2233333333444332 2333333 3322110 0 0000
Q ss_pred -HHH-hhcCCceeeeccCh-HHhhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEe
Q 012613 327 -FVE-MLDGRGHIVKWAPQ-QEVLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLH 399 (460)
Q Consensus 327 -~~~-~~~~~~~~~~~vp~-~~ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 399 (460)
+.+ ....++.+.++..+ ..++..+++ +|..+. -+++.||+.+|+|+|+.... .+...+++. +.|..
T Consensus 238 ~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~ 310 (359)
T cd03808 238 EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFL 310 (359)
T ss_pred HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEE
Confidence 111 11245677776554 459999998 776543 57899999999999996543 345666663 77877
Q ss_pred cCCccCHHHHHHHHHHHhccc
Q 012613 400 LDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 400 l~~~~~~~~l~~ai~~vl~~~ 420 (460)
++. -+.+++.++|.+++.|+
T Consensus 311 ~~~-~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 311 VPP-GDAEALADAIERLIEDP 330 (359)
T ss_pred ECC-CCHHHHHHHHHHHHhCH
Confidence 665 47899999999999883
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.18 E-value=9.9e-08 Score=92.08 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=78.2
Q ss_pred CCceeeeccChH---HhhcCCCccceee----ccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQQ---EVLAHPAVGGFLT----HGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~---~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
.|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+-+.. .....+++ .+.|...+. -+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~-~~ 330 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPP-GD 330 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECC-CC
Confidence 567888999875 47888887 663 24567899999999999986643 45566777 377776665 57
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 406 RREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
.+++.++|.+++++ ... +..++-.+.+. +.-+.+..++++.+.++++
T Consensus 331 ~~~l~~~i~~~~~~---~~~-~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 331 PEALAEAILRLLAD---PWL-RLGRAARRRVA----ERFSWENVAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHHHhcC---cHH-HHhHHHHHHHH----HHhhHHHHHHHHHHHHhhC
Confidence 89999999999998 332 22222222222 3335778888888888764
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.17 E-value=8.4e-08 Score=92.92 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=78.1
Q ss_pred cCCceeeeccC-hH---HhhcCCCccceeecc----CchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCc
Q 012613 332 DGRGHIVKWAP-QQ---EVLAHPAVGGFLTHG----GWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGN 403 (460)
Q Consensus 332 ~~~~~~~~~vp-~~---~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (460)
..++.+.+|++ +. .++..+++ +|.-. ..+++.||+.+|+|+|+.... .....+.+. +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-
Confidence 34567889998 43 47888888 87753 357999999999999986543 333455552 56766655
Q ss_pred cCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 404 VERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 404 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
.+.+.+.+++.+++++ +... .++++..++...+.-+.++.++++++.++++
T Consensus 315 ~~~~~~~~~l~~l~~~---~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 315 GDPEDLAEGIEWLLAD---PDER---EELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred CCHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 5788999999999988 3311 1222222222224567888899999888764
No 61
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.14 E-value=7.1e-08 Score=95.99 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=76.9
Q ss_pred cCCceeeeccChHH---hhcCC----Cccceeecc---C-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEec
Q 012613 332 DGRGHIVKWAPQQE---VLAHP----AVGGFLTHG---G-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHL 400 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---ll~~~----~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 400 (460)
.+++.+.+++++.+ ++..+ |+ ||... | -.++.||+++|+|+|+.... .....+.+. ..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEe
Confidence 35667778777655 46654 56 88654 4 34999999999999998653 355666663 578776
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 401 DGNVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 401 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
+. -+++++.++|.++++| +.. .+++++..++.+.+.-+.+..++++.+.+
T Consensus 389 ~~-~d~~~la~~i~~ll~~---~~~---~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DV-LDLEAIASALEDALSD---SSQ---WQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-CCHHHHHHHHHHHHhC---HHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 65 5789999999999998 332 23344433333335567888888887765
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.14 E-value=1.8e-08 Score=99.90 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=73.1
Q ss_pred ceeeeccCh-HHhhcCCCccceeec-----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHH
Q 012613 335 GHIVKWAPQ-QEVLAHPAVGGFLTH-----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERRE 408 (460)
Q Consensus 335 ~~~~~~vp~-~~ll~~~~~~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (460)
+.+.+.... ..+++.+|+ ++.. ||-.++.||+++|+|+|+-|...++......+.+. |+++.. -++++
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~ 377 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAED 377 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHH
Confidence 344444333 358888887 4432 33346999999999999999988888888887774 776653 36789
Q ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 409 IEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 409 l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+.++|.++++|++ ...+.+++++..+. ..+...+.++.+.+.++
T Consensus 378 La~~l~~ll~~~~~~~~m~~~a~~~~~~------~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 378 LAKAVTYLLTDPDARQAYGEAGVAFLKQ------NQGALQRTLQLLEPYLP 422 (425)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHhcc
Confidence 9999999999832 23344444443332 22444555555555444
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.13 E-value=8e-08 Score=92.78 Aligned_cols=146 Identities=18% Similarity=0.147 Sum_probs=89.8
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhCC-CceEEEEcCCcccchhhhccCchhH-HHhhcCCceeeeccChH---Hhh
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANSR-VPFLWVVRPGLVREAEWLELLPTGF-VEMLDGRGHIVKWAPQQ---EVL 347 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~vp~~---~ll 347 (460)
+..+++..|+.. ..+....+++++++.. .+++++..+.. . ..+..-+ ......|+.+.+|+|+. .++
T Consensus 190 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~~--~----~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~ 261 (357)
T cd03795 190 GRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGPL--E----AELEALAAALGLLDRVRFLGRLDDEEKAALL 261 (357)
T ss_pred CCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCChh--H----HHHHHHHHhcCCcceEEEcCCCCHHHHHHHH
Confidence 356667778765 3345666778887776 44444432211 0 0011111 11223577899999975 488
Q ss_pred cCCCcccee--e---ccCch-hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcccc
Q 012613 348 AHPAVGGFL--T---HGGWN-STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETE 421 (460)
Q Consensus 348 ~~~~~~~~I--~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~ 421 (460)
..+++ +| + +.|.| ++.||+++|+|+|+....+....... +. +.|...+. -+.+++.++|.++++|++
T Consensus 262 ~~ad~--~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 262 AACDV--FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-GDPAALAEAIRRLLEDPE 334 (357)
T ss_pred HhCCE--EEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-CCHHHHHHHHHHHHHCHH
Confidence 88888 55 2 23444 79999999999999765555433332 23 67766655 578999999999999843
Q ss_pred -HHHHHHHHHHHH
Q 012613 422 -GQEMRERILYSK 433 (460)
Q Consensus 422 -~~~~~~~a~~~~ 433 (460)
...+++++++..
T Consensus 335 ~~~~~~~~~~~~~ 347 (357)
T cd03795 335 LRERLGEAARERA 347 (357)
T ss_pred HHHHHHHHHHHHH
Confidence 334444444433
No 64
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.13 E-value=1.9e-08 Score=94.39 Aligned_cols=301 Identities=16% Similarity=0.115 Sum_probs=156.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhc
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP-LNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKC 93 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
|||.+--.-. .|+.=+..+.++|.++||+|.+.+-+... ...-...|+.+..+...-. .....+.. ...
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~------~~~~Kl~~-~~~-- 70 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGD------SLYGKLLE-SIE-- 70 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCC------CHHHHHHH-HHH--
Confidence 4555543333 49999999999999999999998876433 1112225777777763111 11111111 111
Q ss_pred chhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcccc
Q 012613 94 VVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLEA 173 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 173 (460)
....+++.+.+ . +||++|+- .+..+..+|.-+|||+|.+.-+...... +....|....-
T Consensus 71 --R~~~l~~~~~~-----~-~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~---------~~Lt~Pla~~i--- 129 (335)
T PF04007_consen 71 --RQYKLLKLIKK-----F-KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ---------NRLTLPLADVI--- 129 (335)
T ss_pred --HHHHHHHHHHh-----h-CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc---------ceeehhcCCee---
Confidence 12234444444 4 89999976 4466778999999999999765322111 11111111000
Q ss_pred cccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEE-EcCchhccHHHHHHhhhhcCCCCcccccccccCCCCC
Q 012613 174 RVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGII-WNSYRELEQVELTTIHHQYFSIPVFPIGPFHKYFPAS 252 (460)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~ 252 (460)
..|.. ........+ -.+ +.+. .+++.|+- |+=
T Consensus 130 ~~P~~--------------~~~~~~~~~------G~~-~~i~~y~G~~E~a-----------------yl~--------- 162 (335)
T PF04007_consen 130 ITPEA--------------IPKEFLKRF------GAK-NQIRTYNGYKELA-----------------YLH--------- 162 (335)
T ss_pred ECCcc--------------cCHHHHHhc------CCc-CCEEEECCeeeEE-----------------eec---------
Confidence 00000 000000000 000 1111 23332221 111
Q ss_pred CCCcccccccchhhhccCCCCeEEEEEccCccc----CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHH
Q 012613 253 SSSLLSQDESCISWLDKHAPKSVIYVSFGSVVN----IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFV 328 (460)
Q Consensus 253 ~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 328 (460)
+..++++..+-+.. .+++.|++-+-+... .....+..+++.+++.+..+++..+... ...+-+.+
T Consensus 163 ---~F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~------~~~~~~~~- 231 (335)
T PF04007_consen 163 ---PFKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED------QRELFEKY- 231 (335)
T ss_pred ---CCCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc------hhhHHhcc-
Confidence 12223223333332 245777777766433 2234566789999988776444443322 01111111
Q ss_pred HhhcCCcee-eeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 329 EMLDGRGHI-VKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 329 ~~~~~~~~~-~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
++.+ .+.++..+||.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+.+ .|+ ... .-+.+
T Consensus 232 -----~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gl--l~~-~~~~~ 298 (335)
T PF04007_consen 232 -----GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KGL--LYH-STDPD 298 (335)
T ss_pred -----CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CCC--eEe-cCCHH
Confidence 1233 255666789999998 998777 7889999999999985 22232223345666 365 222 24666
Q ss_pred HHHHHHHHHh
Q 012613 408 EIEIAVRRVM 417 (460)
Q Consensus 408 ~l~~ai~~vl 417 (460)
++.+.|.+.+
T Consensus 299 ei~~~v~~~~ 308 (335)
T PF04007_consen 299 EIVEYVRKNL 308 (335)
T ss_pred HHHHHHHHhh
Confidence 6666555544
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.11 E-value=1.3e-07 Score=90.40 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=62.7
Q ss_pred CceeeeccCh-HHhhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhhe-eeEecCCccCHH
Q 012613 334 RGHIVKWAPQ-QEVLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWR-LGLHLDGNVERR 407 (460)
Q Consensus 334 ~~~~~~~vp~-~~ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~ 407 (460)
++.+.++... ..++..+++ +|.-.. -+++.||+.+|+|+|+.+..+.+. .+... | .|...+. -+.+
T Consensus 236 ~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~-~~~~ 307 (348)
T cd03820 236 RVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN-GDVE 307 (348)
T ss_pred eEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC-CCHH
Confidence 4456666333 458988887 776642 468999999999999876544332 23332 4 7777765 5689
Q ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHH
Q 012613 408 EIEIAVRRVMIETE-GQEMRERILYSKEK 435 (460)
Q Consensus 408 ~l~~ai~~vl~~~~-~~~~~~~a~~~~~~ 435 (460)
++.++|.++++|++ ...++++++++.+.
T Consensus 308 ~~~~~i~~ll~~~~~~~~~~~~~~~~~~~ 336 (348)
T cd03820 308 ALAEALLRLMEDEELRKRMGANARESAER 336 (348)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999832 23344444444433
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.11 E-value=1.2e-07 Score=93.27 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=73.1
Q ss_pred CCceeeeccChHH---hhcCCCccceeec---cCch-hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQQE---VLAHPAVGGFLTH---GGWN-STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~~---ll~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
+++.+.+|+|+.+ +++.+|+ +|.- -|.| ++.||+++|+|+|+....+ ....+.+ |.+.... .+
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~~ 319 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--PD 319 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--CC
Confidence 4578889998644 8888888 7643 2444 9999999999999987653 3344544 4342222 37
Q ss_pred HHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 406 RREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.+++.+++.+++++.. ...+. ++.++.+. +.-+.++.++++++.+++
T Consensus 320 ~~~l~~~l~~~l~~~~~~~~~~---~~~~~~~~----~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 320 VESIVRKLEEAISILRTGKHDP---WSFHNRVK----KMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred HHHHHHHHHHHHhChhhhhhHH---HHHHHHHH----hhCCHHHHHHHHHHHHHH
Confidence 8999999999998721 11111 22223333 667788888888887764
No 67
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.10 E-value=5.2e-09 Score=101.59 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=97.4
Q ss_pred CCeEEEEEccCcccC-CHHHHHHHHHHHhhCCCc-eEEEEcCCcccchhhhccCchhHHHhh--cCCceeeeccChH---
Q 012613 272 PKSVIYVSFGSVVNI-DETEFLEIAWGLANSRVP-FLWVVRPGLVREAEWLELLPTGFVEML--DGRGHIVKWAPQQ--- 344 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~vp~~--- 344 (460)
+++.+++++|..... ..+.+..++++++....+ +.++...... + ...+-+.+.+.. ..|+.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-~---~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-T---RPRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-h---HHHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 456788888876542 356677888888775432 4444433221 0 011111111111 3466776655543
Q ss_pred HhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHH
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQE 424 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~ 424 (460)
.++..+|+ +|+.+| |.+.||++.|+|+|+++.. |. +..+.+. |++..+.. +.+.+.++|.+++++ +.
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~--~~~~i~~~i~~ll~~---~~ 339 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT--DPEAILAAIEKLLSD---EF 339 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC--CHHHHHHHHHHHhcC---ch
Confidence 47888998 999999 8888999999999998743 22 3344553 77765543 589999999999998 33
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 425 MRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
.++ +++ . ...+..++.+.+++.|
T Consensus 340 ~~~---~~~---~----~~~~~~~a~~~I~~~l 362 (363)
T cd03786 340 AYS---LMS---I----NPYGDGNASERIVEIL 362 (363)
T ss_pred hhh---cCC---C----CCCCCCHHHHHHHHHh
Confidence 222 222 2 3344556667777665
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.06 E-value=3.2e-07 Score=88.70 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=68.5
Q ss_pred CCceeeeccChHH---hhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQQE---VLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~~---ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
+++.+.+|+++.+ ++..+++ +|.-.- ..++.||+++|+|+|+.+.. .....+.+ +.|..... +
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~--~ 331 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD--D 331 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--C
Confidence 5668889999654 6888888 665432 46899999999999997643 33444443 56665554 4
Q ss_pred HHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 012613 406 RREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLI 454 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (460)
.+++.++|.+++++.+ ...+.+++++. ++ +..+.++.+++++
T Consensus 332 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~---~~----~~~s~~~~~~~~~ 374 (375)
T cd03821 332 VDALAAALRRALELPQRLKAMGENGRAL---VE----ERFSWTAIAQQLL 374 (375)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHH---HH----HhcCHHHHHHHhh
Confidence 4999999999999832 22333333333 12 4445666666554
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.04 E-value=3.4e-07 Score=96.66 Aligned_cols=394 Identities=13% Similarity=0.101 Sum_probs=204.0
Q ss_pred CCceEEEEcCC---------------CccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C-----------
Q 012613 13 NGKRVILFPLP---------------YQGHINPMLQIASVLYSKG--FSITIIHTNLNPLN-------A----------- 57 (460)
Q Consensus 13 ~~~~Il~~~~~---------------~~GH~~p~~~La~~L~~rG--h~V~~~~~~~~~~~-------~----------- 57 (460)
+++.|++++.- +.|+..=.+.||++|+++| |+|.++|-....+. .
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 46778777532 2356667789999999998 89999886532111 0
Q ss_pred -----CCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchhHHHH----HHHhhccCCCCCCCeeEEEECCcc--hh
Q 012613 58 -----CNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVVPFWDC----LVKLTSISNVQEDSFACIITDPLW--YF 126 (460)
Q Consensus 58 -----~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~l~~~~~~~~~~pDlvi~D~~~--~~ 126 (460)
...+|+..+.+|-+-...+.....+...+..|...+...+... .+.+.. ..+. .||+|-+.... ..
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~--~~~~-~pDvIHaHyw~sG~a 324 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGS--GHPV-WPYVIHGHYADAGDS 324 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc--ccCC-CCCEEEECcchHHHH
Confidence 0124788888886544344444455555555544444433321 122211 0112 59999988544 55
Q ss_pred HHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHh
Q 012613 127 VHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVS 206 (460)
Q Consensus 127 ~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+..+++.+|||.|....+......... ...+..+. ... .....+...+.--..
T Consensus 325 a~~L~~~lgVP~V~T~HSLgr~K~~~l-----l~~g~~~~-----------------~~~-----~~~y~~~~Ri~~Ee~ 377 (1050)
T TIGR02468 325 AALLSGALNVPMVLTGHSLGRDKLEQL-----LKQGRMSK-----------------EEI-----NSTYKIMRRIEAEEL 377 (1050)
T ss_pred HHHHHHhhCCCEEEECccchhhhhhhh-----cccccccc-----------------ccc-----ccccchHHHHHHHHH
Confidence 567899999998885443211000000 00000000 000 000011222222233
Q ss_pred hhccccEEEEcCchhccHHHHHH--hhhhc------------------CCCC--ccccccccc--CCCCC---CC-----
Q 012613 207 LIKASSGIIWNSYRELEQVELTT--IHHQY------------------FSIP--VFPIGPFHK--YFPAS---SS----- 254 (460)
Q Consensus 207 ~~~~~~~~l~~~~~~le~~~~~~--~~~~~------------------~~~p--v~~vGpl~~--~~~~~---~~----- 254 (460)
.+..++.++..|..+-+..+--+ . .+. +... |++-|--.. .+... +.
T Consensus 378 ~l~~Ad~VIasT~qE~~eq~~lY~~~-~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~ 456 (1050)
T TIGR02468 378 SLDASEIVITSTRQEIEEQWGLYDGF-DVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNE 456 (1050)
T ss_pred HHHhcCEEEEeCHHHHHHHHHHhccC-CchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccc
Confidence 46778889998887776321110 0 000 0012 444442111 11000 00
Q ss_pred ----Cc-ccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCC-----CceEEEEcCCcccchhh-----
Q 012613 255 ----SL-LSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSR-----VPFLWVVRPGLVREAEW----- 319 (460)
Q Consensus 255 ----~~-~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~----- 319 (460)
.+ .+.+..+..|+.. +++ .+++..|... ..+.+..+++|+..+. ..+.++++.... ..+.
T Consensus 457 ~~~~~~~~~~~~~l~r~~~~-pdk-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd-~d~l~~~~~ 531 (1050)
T TIGR02468 457 EHPAKPDPPIWSEIMRFFTN-PRK-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDD-IDEMSSGSS 531 (1050)
T ss_pred cccccccchhhHHHHhhccc-CCC-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCch-hhhhhccch
Confidence 00 0112234556643 333 4455567665 3445566777775542 234444543210 0000
Q ss_pred --hccCchhHHHh--hcCCceeeeccChHH---hhcCC----Cccceeec---cCc-hhHHHhHhcCCceeecccccchh
Q 012613 320 --LELLPTGFVEM--LDGRGHIVKWAPQQE---VLAHP----AVGGFLTH---GGW-NSTLESICEGVPMICQPYLGDQM 384 (460)
Q Consensus 320 --~~~l~~~~~~~--~~~~~~~~~~vp~~~---ll~~~----~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~ 384 (460)
...+- ...++ +.+++.+.+++++.+ ++..+ ++ ||+- =|+ .++.||+++|+|+|+....+
T Consensus 532 ~~l~~L~-~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG--- 605 (1050)
T TIGR02468 532 SVLTSVL-KLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG--- 605 (1050)
T ss_pred HHHHHHH-HHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC---
Confidence 00010 11111 225667778888764 56655 35 7775 343 48999999999999987543
Q ss_pred hhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 385 VNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 385 ~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
....++. -.-|..++. -+++.|+++|.++++|+. ...|.+++++..+ ..+....++.+++.+++
T Consensus 606 -~~EII~~-g~nGlLVdP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~--------~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 606 -PVDIHRV-LDNGLLVDP-HDQQAIADALLKLVADKQLWAECRQNGLKNIH--------LFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred -cHHHhcc-CCcEEEECC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHH
Confidence 3445555 256777766 578999999999999833 3344444443322 25678888888877654
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.03 E-value=4.2e-07 Score=87.84 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=73.9
Q ss_pred CCceeee-ccChH---HhhcCCCccceeec------cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC
Q 012613 333 GRGHIVK-WAPQQ---EVLAHPAVGGFLTH------GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG 402 (460)
Q Consensus 333 ~~~~~~~-~vp~~---~ll~~~~~~~~I~H------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 402 (460)
.|+.+.+ |+|+. .++..+++ +|.- |..+++.||+++|+|+|+.+..+ ...+... +.|..+..
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC
Confidence 4566664 48864 48888887 6632 33568999999999999987654 3445553 77777665
Q ss_pred ccCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 403 NVERREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 403 ~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
-+.+++.+++.++++|.+ ...+.+++++..+ + -+.++.++++.+.+
T Consensus 319 -~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~-~s~~~~~~~~~~~~ 365 (366)
T cd03822 319 -GDPAALAEAIRRLLADPELAQALRARAREYAR-------A-MSWERVAERYLRLL 365 (366)
T ss_pred -CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh-------h-CCHHHHHHHHHHHh
Confidence 468999999999999832 2233333333333 3 56888888887765
No 71
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.03 E-value=5.2e-07 Score=87.57 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=62.6
Q ss_pred cCCceeeeccChHH---hhcCCCccceeecc----------CchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeE
Q 012613 332 DGRGHIVKWAPQQE---VLAHPAVGGFLTHG----------GWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGL 398 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---ll~~~~~~~~I~HG----------G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 398 (460)
.+++.+.+++|+.+ ++..+++ +|..+ -.+++.||+++|+|+|+-+.. .+...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 45678889998654 6888888 76432 356899999999999987764 366777774 8888
Q ss_pred ecCCccCHHHHHHHHHHHhcc
Q 012613 399 HLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 399 ~l~~~~~~~~l~~ai~~vl~~ 419 (460)
.++. -+.+++.++|.++++|
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcC
Confidence 7765 5779999999999998
No 72
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.98 E-value=3e-07 Score=87.96 Aligned_cols=152 Identities=13% Similarity=0.046 Sum_probs=95.0
Q ss_pred EEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHh--hcCCceeeeccChHH---hhcCC
Q 012613 276 IYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEM--LDGRGHIVKWAPQQE---VLAHP 350 (460)
Q Consensus 276 I~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~vp~~~---ll~~~ 350 (460)
+++..|... ..+....++++++..+.++++.-.+...+ .+-....+. ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDPD------YFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCHH------HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 444557664 33445667788888777766654432210 011111112 246778899999754 68888
Q ss_pred Cccceee----ccCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHHH
Q 012613 351 AVGGFLT----HGGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQEM 425 (460)
Q Consensus 351 ~~~~~I~----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~ 425 (460)
++ +|. +-|. .++.||+++|+|+|+.... .+...+.+ -..|...+. .+++.+++.+++.. .
T Consensus 245 d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~~---~~~l~~~l~~l~~~---~-- 309 (335)
T cd03802 245 RA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVDS---VEELAAAVARADRL---D-- 309 (335)
T ss_pred cE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeCC---HHHHHHHHHHHhcc---H--
Confidence 88 553 2343 4899999999999987653 34455555 246766654 88999999998765 2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 426 RERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
++++++. +. +..+.++.++++++.+
T Consensus 310 ~~~~~~~---~~----~~~s~~~~~~~~~~~y 334 (335)
T cd03802 310 RAACRRR---AE----RRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHHH---HH----HhCCHHHHHHHHHHHh
Confidence 2333332 22 4556888888888765
No 73
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.98 E-value=8e-07 Score=86.01 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=90.2
Q ss_pred EEEccCcccCCHHHHHHHHHHHhhCC--CceEEEEcCCcccchhhhccCchhHH--HhhcCCceeeeccChHH---hhcC
Q 012613 277 YVSFGSVVNIDETEFLEIAWGLANSR--VPFLWVVRPGLVREAEWLELLPTGFV--EMLDGRGHIVKWAPQQE---VLAH 349 (460)
Q Consensus 277 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~vp~~~---ll~~ 349 (460)
++..|+... .+.+..+++++.+.. .++++ ++...... ..-..+. ....+++.+.+++++.+ ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~i-vG~~~~~~-----~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVI-VGNADHNT-----PYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEE-EcCCCCcc-----hHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677653 344556677776654 44443 34321111 0111222 12235678889999864 6667
Q ss_pred CCccceeeccCc-----hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHH
Q 012613 350 PAVGGFLTHGGW-----NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQE 424 (460)
Q Consensus 350 ~~~~~~I~HGG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~ 424 (460)
+++ ++-++-. +++.||+++|+|+|+....+ +...++.. |... .. . +.+.++|.++++| +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~~--~~--~-~~l~~~i~~l~~~---~~ 332 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIYF--KV--G-DDLASLLEELEAD---PE 332 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeEe--cC--c-hHHHHHHHHHHhC---HH
Confidence 776 6665443 47999999999999976543 22233332 4332 22 1 1299999999998 32
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 425 MRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
. ..++++..++.+.+..+.+..++++++.++
T Consensus 333 ~---~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 333 E---VSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred H---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 2 223334333333356678888888887753
No 74
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.95 E-value=1.5e-06 Score=85.26 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=64.5
Q ss_pred cCCceeeeccChH---HhhcCCCccceeecc---C-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCcc
Q 012613 332 DGRGHIVKWAPQQ---EVLAHPAVGGFLTHG---G-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNV 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~---~ll~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 404 (460)
.+|+.+.+++|.. .++..+++ ++... | -.++.||+++|+|+|+.-.. .....+.+. +.|.....
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 3577899999976 47888888 76432 2 24789999999999997543 344556663 67766643
Q ss_pred CHHHHHHHHHHHhcccc-HHHHHHHHHH
Q 012613 405 ERREIEIAVRRVMIETE-GQEMRERILY 431 (460)
Q Consensus 405 ~~~~l~~ai~~vl~~~~-~~~~~~~a~~ 431 (460)
+.+++.++|.+++++++ ...+.+++++
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999842 3344444444
No 75
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.92 E-value=4.5e-08 Score=95.07 Aligned_cols=134 Identities=14% Similarity=0.170 Sum_probs=82.5
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCchhHHHhh--cCCceeeeccChH-
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLPTGFVEML--DGRGHIVKWAPQQ- 344 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~vp~~- 344 (460)
+..++++.+-.... .+.+..+++|++++ +.++++...++. + ....+.+.. .+|+.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-~-------~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP-V-------VREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh-H-------HHHHHHHHhCCCCCEEEECCCChHH
Confidence 35666665432211 24466677777653 345555433321 0 011121211 2467777766654
Q ss_pred --HhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccH
Q 012613 345 --EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEG 422 (460)
Q Consensus 345 --~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~ 422 (460)
.++..+++ +|+.+|.. +.||+++|+|+|.++-.++++. +... |.+..+. .+++.|.+++.++++|
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 57788887 99987744 7999999999999976555553 2333 7665553 4789999999999998
Q ss_pred HHHHHH
Q 012613 423 QEMRER 428 (460)
Q Consensus 423 ~~~~~~ 428 (460)
+..+++
T Consensus 335 ~~~~~~ 340 (365)
T TIGR00236 335 PDEYKK 340 (365)
T ss_pred hHHHHH
Confidence 554443
No 76
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.92 E-value=1.1e-06 Score=84.76 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=62.6
Q ss_pred CCceeeeccCh-HHhhcCCCccceeecc----C-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCH
Q 012613 333 GRGHIVKWAPQ-QEVLAHPAVGGFLTHG----G-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVER 406 (460)
Q Consensus 333 ~~~~~~~~vp~-~~ll~~~~~~~~I~HG----G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (460)
+++.+.+|.+. ..+|..+++ +|+-+ | -+++.||+++|+|+|+.-.. .+...+.+. +.|..++. -+.
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~ 317 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPP-GDA 317 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCC-CCH
Confidence 45678888553 458989998 66432 3 35999999999999987543 345566663 67877765 588
Q ss_pred HHHHHHHHHHhc-ccc-HHHHHHHHHHHHH
Q 012613 407 REIEIAVRRVMI-ETE-GQEMRERILYSKE 434 (460)
Q Consensus 407 ~~l~~ai~~vl~-~~~-~~~~~~~a~~~~~ 434 (460)
+.+.++|..++. +++ ...++++|++..+
T Consensus 318 ~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 318 EALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 899999976654 421 3344444444443
No 77
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.91 E-value=1.4e-06 Score=85.42 Aligned_cols=165 Identities=12% Similarity=0.092 Sum_probs=97.8
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhC--CCceEEEEcCCcccchhhhccCchhHHHhh------cCCcee-eeccCh
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANS--RVPFLWVVRPGLVREAEWLELLPTGFVEML------DGRGHI-VKWAPQ 343 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-~~~vp~ 343 (460)
+.++++..|.... .+.+..+++|++.. +.+++++.++...+. +-+.+.+.. ..++.+ ..++++
T Consensus 200 ~~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (388)
T TIGR02149 200 SRPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE------VAEEVRQAVALLDRNRTGIIWINKMLPK 271 (388)
T ss_pred CceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH------HHHHHHHHHHHhccccCceEEecCCCCH
Confidence 3445666677653 34456666666654 445555544332110 111121111 122343 367775
Q ss_pred H---HhhcCCCccceeecc---C-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-ccC----HHHHHH
Q 012613 344 Q---EVLAHPAVGGFLTHG---G-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-NVE----RREIEI 411 (460)
Q Consensus 344 ~---~ll~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~----~~~l~~ 411 (460)
. .++..+|+ +|.-+ | -.++.||+++|+|+|+... ......+++. +.|..++. +.+ .+.+.+
T Consensus 272 ~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 272 EELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHH
Confidence 4 47889998 77532 2 3477999999999999754 3466677773 77888876 322 289999
Q ss_pred HHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 412 AVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 412 ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+|.++++|++ ...+.+++++. +.+.-+.+..++++++.+++
T Consensus 345 ~i~~l~~~~~~~~~~~~~a~~~-------~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 345 AINILLADPELAKKMGIAGRKR-------AEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHhCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHh
Confidence 9999998832 22233333322 22445688888898888875
No 78
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.91 E-value=1.4e-06 Score=84.18 Aligned_cols=163 Identities=11% Similarity=0.106 Sum_probs=95.8
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCchhHHH-hhcCCceeeeccCh-H
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLPTGFVE-MLDGRGHIVKWAPQ-Q 344 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~vp~-~ 344 (460)
+++.+++..|+... .+....++++++.. +.+++++-.+.. . + .+-.-+.+ ...+|+.+.+++.+ .
T Consensus 186 ~~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~-~---~~~~~~~~~~~~~~v~~~g~~~~~~ 257 (360)
T cd04951 186 NDTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL--R-A---TLERLIKALGLSNRVKLLGLRDDIA 257 (360)
T ss_pred CCCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc--H-H---HHHHHHHhcCCCCcEEEecccccHH
Confidence 34567777787653 23334444444432 345555433221 0 0 01111111 11245678887765 4
Q ss_pred HhhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccc
Q 012613 345 EVLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 420 (460)
.++..+++ +|.-.. .+++.||+++|+|+|+. |...+...+++ .|... .. -+.+++.++|.+++++.
T Consensus 258 ~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~--~~-~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 258 AYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIV--PI-SDPEALANKIDEILKMS 327 (360)
T ss_pred HHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEe--CC-CCHHHHHHHHHHHHhCC
Confidence 68999998 666432 56899999999999974 44556666666 35543 33 57889999999998432
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 421 EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+.+++...+-++.+. +.-+.+..++++.+.++
T Consensus 328 --~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 328 --GEERDIIGARRERIV----KKFSINSIVQQWLTLYT 359 (360)
T ss_pred --HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHhh
Confidence 344443333233333 55678888888887765
No 79
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.89 E-value=3.5e-07 Score=86.62 Aligned_cols=158 Identities=15% Similarity=0.039 Sum_probs=97.6
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhCCCc-eEEEEcCCcccchhhhccCchhHHHhhcC--CceeeeccChHHhhcC
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANSRVP-FLWVVRPGLVREAEWLELLPTGFVEMLDG--RGHIVKWAPQQEVLAH 349 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~vp~~~ll~~ 349 (460)
+++|.+--||....-...+..++++.+.+..+ ..+.+..... . +.+.+.... ...+.+ .-.+++..
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~--------~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK--------G-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc--------H-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 37888989998753234444444555443221 2222222210 0 222221111 112222 33469999
Q ss_pred CCccceeeccCchhHHHhHhcCCceeeccc--ccchhhhHHHhh---hhheeeEec-------------CC-ccCHHHHH
Q 012613 350 PAVGGFLTHGGWNSTLESICEGVPMICQPY--LGDQMVNARYIS---HVWRLGLHL-------------DG-NVERREIE 410 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~---~~~G~G~~l-------------~~-~~~~~~l~ 410 (460)
+|+ +|+-+|..|+ |+...|+|+|+ +. ..=|+.||+++. . .|+.-.+ .. +.|++.|.
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la 310 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLL 310 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHH
Confidence 998 9999999999 99999999999 44 446788999999 5 4655333 22 68899999
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 012613 411 IAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLID 455 (460)
Q Consensus 411 ~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (460)
+++.+ ... +.+++...++++.+. . ++++++++.+.+
T Consensus 311 ~~i~~-~~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i~~ 346 (347)
T PRK14089 311 KAYKE-MDR---EKFFKKSKELREYLK----H-GSAKNVAKILKE 346 (347)
T ss_pred HHHHH-HHH---HHHHHHHHHHHHHhc----C-CHHHHHHHHHhc
Confidence 99987 223 567777777777664 3 666666665543
No 80
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.88 E-value=2.5e-06 Score=82.26 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=59.9
Q ss_pred CCceeeeccChHH---hhcCCCccceeec----------cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEe
Q 012613 333 GRGHIVKWAPQQE---VLAHPAVGGFLTH----------GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLH 399 (460)
Q Consensus 333 ~~~~~~~~vp~~~---ll~~~~~~~~I~H----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 399 (460)
+|+.+.+++|+.+ ++..+++ +|.- |.-+++.||+++|+|+|+.+..+ ....+++ ...|..
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g~~ 308 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETGLL 308 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCceEE
Confidence 5678889998654 7788888 6662 33468999999999999976532 3345555 257877
Q ss_pred cCCccCHHHHHHHHHHHhccc
Q 012613 400 LDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 400 l~~~~~~~~l~~ai~~vl~~~ 420 (460)
++. -+.+++.++|.++++++
T Consensus 309 ~~~-~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 309 VPP-GDPEALADAIERLLDDP 328 (355)
T ss_pred eCC-CCHHHHHHHHHHHHhCH
Confidence 765 48899999999999983
No 81
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.87 E-value=1.1e-06 Score=84.03 Aligned_cols=131 Identities=16% Similarity=0.268 Sum_probs=78.0
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCchhHHHh--hcCCceeeeccChH
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLPTGFVEM--LDGRGHIVKWAPQQ 344 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~vp~~ 344 (460)
+++.+++..|+... .+....++++++.+ +.+++++ +.+.. ..+ +- ...++ ..+++.+.++++..
T Consensus 187 ~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~-~~~----~~-~~~~~~~~~~~v~~~g~~~~~ 257 (353)
T cd03811 187 PDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDGPL-REE----LE-ALAKELGLADRVHFLGFQSNP 257 (353)
T ss_pred CCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCCcc-HHH----HH-HHHHhcCCCccEEEecccCCH
Confidence 44677777888763 23344455555443 2344443 32211 100 00 11111 12456777887753
Q ss_pred -HhhcCCCccceeec----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHH---HHHHHHH
Q 012613 345 -EVLAHPAVGGFLTH----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREI---EIAVRRV 416 (460)
Q Consensus 345 -~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l---~~ai~~v 416 (460)
+++..+++ +|.- |.-+++.||+++|+|+|+.... .....+++. +.|...+. -+.+.+ .+++.++
T Consensus 258 ~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~~~~~~~~~~i~~~ 329 (353)
T cd03811 258 YPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-GDEAALAAAALALLDL 329 (353)
T ss_pred HHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-CCHHHHHHHHHHHHhc
Confidence 58999988 7743 3356899999999999986543 566778774 88887776 456666 5666666
Q ss_pred hcc
Q 012613 417 MIE 419 (460)
Q Consensus 417 l~~ 419 (460)
+++
T Consensus 330 ~~~ 332 (353)
T cd03811 330 LLD 332 (353)
T ss_pred cCC
Confidence 666
No 82
>PLN02275 transferase, transferring glycosyl groups
Probab=98.86 E-value=4.8e-06 Score=81.00 Aligned_cols=323 Identities=14% Similarity=0.091 Sum_probs=160.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCCCCC--CCCCCCeEEEEcCCCCCCCccCcccHHHHHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGF-SITIIHTNLNPLN--ACNYPHFEFHSISASLSETEASTEDMVAILIAL 89 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh-~V~~~~~~~~~~~--~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
.+.++.++..+-.|.-..+..++..|+++|| +|++++....... .....+++.+.++. +............+..+
T Consensus 3 ~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~--~~~~~~~~~~~~~~~~~ 80 (371)
T PLN02275 3 RRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ--PRLLQRLPRVLYALALL 80 (371)
T ss_pred CccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC--cccccccccchHHHHHH
Confidence 3567777777888899999999999999986 7999987533321 12335788888874 21111111122211111
Q ss_pred HHhcchhHHHHHHHh--hccCCCCCCCeeEEEECC-cch----hHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcC
Q 012613 90 NAKCVVPFWDCLVKL--TSISNVQEDSFACIITDP-LWY----FVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKC 162 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l--~~~~~~~~~~pDlvi~D~-~~~----~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
..... .+..++..+ +. . +||+|++.. ... .+..++...++|++........ .. .. ..
T Consensus 81 ~~~~~-~~~~~~~~~~~~~-----~-~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~--~~-~~------~~ 144 (371)
T PLN02275 81 LKVAI-QFLMLLWFLCVKI-----P-RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGY--TL-LA------LS 144 (371)
T ss_pred HHHHH-HHHHHHHHHHhhC-----C-CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccH--HH-Hh------cc
Confidence 11101 111222221 12 3 899999853 221 2334667789999885443211 00 00 00
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhh-hccccEEEEcCchhccHHHHHHhhhhcCCCC--c
Q 012613 163 YLPIQDSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSL-IKASSGIIWNSYRELEQVELTTIHHQYFSIP--V 239 (460)
Q Consensus 163 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~le~~~~~~~~~~~~~~p--v 239 (460)
. ................ .+.++.+++.|...-+.- ...++.+ +
T Consensus 145 ~----------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l------~~~~g~~i~v 190 (371)
T PLN02275 145 L----------------------------GRSHPLVRLYRWYERHYGKMADGHLCVTKAMQHEL------DQNWGIRATV 190 (371)
T ss_pred c----------------------------CCCCHHHHHHHHHHHHHHhhCCEEEECCHHHHHHH------HHhcCCCeEE
Confidence 0 0011112222222222 345677777665433321 2211222 3
Q ss_pred ccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhC------------------
Q 012613 240 FPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANS------------------ 301 (460)
Q Consensus 240 ~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~------------------ 301 (460)
++-|. .... .+.+.. .. +. .+++.++++-|.... .+.+..+++|+...
T Consensus 191 i~n~~-~~~f-----~~~~~~---~~-~~--~~~~~~i~~~grl~~--~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~ 256 (371)
T PLN02275 191 LYDQP-PEFF-----RPASLE---IR-LR--PNRPALVVSSTSWTP--DEDFGILLEAAVMYDRRVAARLNESDSASGKQ 256 (371)
T ss_pred ECCCC-HHHc-----CcCCch---hc-cc--CCCcEEEEEeCceec--cCCHHHHHHHHHHHHhhhhhcccccccccccc
Confidence 33331 1100 011111 01 11 123445555566543 22333344444321
Q ss_pred ----CCceEEEEcCCcccchhhhccCchhHHHhhcCCceeee-ccChHH---hhcCCCccceee-c-----cC-chhHHH
Q 012613 302 ----RVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVK-WAPQQE---VLAHPAVGGFLT-H-----GG-WNSTLE 366 (460)
Q Consensus 302 ----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~vp~~~---ll~~~~~~~~I~-H-----GG-~gs~~e 366 (460)
+.++++ +|++.. .+.+-+.+.+..-+|+.+.. |+|+.+ +|+.+|+ +|. + -| -+++.|
T Consensus 257 ~~~~~i~l~i-vG~G~~-----~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llE 328 (371)
T PLN02275 257 SLYPRLLFII-TGKGPQ-----KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVD 328 (371)
T ss_pred ccCCCeEEEE-EeCCCC-----HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHH
Confidence 233333 343220 01111111111113445554 788765 5999998 773 1 12 347999
Q ss_pred hHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHh
Q 012613 367 SICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVM 417 (460)
Q Consensus 367 al~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl 417 (460)
|+++|+|+|+... ..+...+++. +.|..++ +++++.++|.++|
T Consensus 329 AmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~---~~~~la~~i~~l~ 371 (371)
T PLN02275 329 MFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS---SSSELADQLLELL 371 (371)
T ss_pred HHHCCCCEEEecC----CChHHHccCC-CCeEEEC---CHHHHHHHHHHhC
Confidence 9999999999754 3366777774 7898775 4788999998875
No 83
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.84 E-value=7.5e-06 Score=78.72 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=71.5
Q ss_pred CCceeeeccCh-HHhhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 333 GRGHIVKWAPQ-QEVLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 333 ~~~~~~~~vp~-~~ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
.++.+.+..+. ..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+.+. |. .++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~~-g~--~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGDT-GF--LVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhcC-CE--EeCC-CCHH
Confidence 34455554443 469999998 886654 3799999999999998543 4455555542 43 3443 3689
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 408 EIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 408 ~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
++.++|.+++++. +.+++..++.++.++ +.-+..+.++.+.+.+
T Consensus 321 ~l~~~i~~l~~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLADP--ALRQALGEAARERIE----ENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHh
Confidence 9999999999983 223333333333333 5567888888887765
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.81 E-value=1.1e-06 Score=86.43 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=75.5
Q ss_pred CCceeeeccChH-HhhcCCCccceee--c--cCch-hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCH
Q 012613 333 GRGHIVKWAPQQ-EVLAHPAVGGFLT--H--GGWN-STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVER 406 (460)
Q Consensus 333 ~~~~~~~~vp~~-~ll~~~~~~~~I~--H--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (460)
.++.+.++++.. .++..+++ +|. + .|.+ .+.||+++|+|+|+.+...+. ..+.. |.|..+. -++
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----ccccC-CcceEeC--CCH
Confidence 456888999864 58999998 763 2 3544 699999999999998864322 11232 6676654 488
Q ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 407 REIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 407 ~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+++.++|.++++|.+ ...+.+++++. +.+.-+.++.++.+.+.++.
T Consensus 350 ~~la~ai~~ll~~~~~~~~~~~~ar~~-------v~~~fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 350 ADFAAAILALLANPAEREELGQAARRR-------VLQHYHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHhcC
Confidence 999999999999832 22333333332 22456788888888888764
No 85
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.80 E-value=2.9e-05 Score=80.55 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCceeeecc-Ch---HHhhcC----CCccceeecc---Cc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEec
Q 012613 333 GRGHIVKWA-PQ---QEVLAH----PAVGGFLTHG---GW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHL 400 (460)
Q Consensus 333 ~~~~~~~~v-p~---~~ll~~----~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 400 (460)
+++.+.++. +. .+++.+ +++ ||.-. |. -|+.||+++|+|+|+.-.. .....|++. .-|..+
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLV 691 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHI 691 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEe
Confidence 456666653 32 245542 244 77532 33 4899999999999996544 466677773 678888
Q ss_pred CCccCHHHHHHHHHHHh----cccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 401 DGNVERREIEIAVRRVM----IETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 401 ~~~~~~~~l~~ai~~vl----~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
+. -+++.+.++|.+++ +|++ ...+.+++++ .+.+..+....++++++..
T Consensus 692 dp-~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~-------rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 692 DP-YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ-------RIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred CC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHHH
Confidence 76 47788999998876 4521 2333333322 2224455677777666543
No 86
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.79 E-value=5.3e-06 Score=80.85 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=75.7
Q ss_pred CceeeeccCh-HHhhcCCCccceeec----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHH
Q 012613 334 RGHIVKWAPQ-QEVLAHPAVGGFLTH----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERRE 408 (460)
Q Consensus 334 ~~~~~~~vp~-~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (460)
++.+.++..+ .+++..+|+ +|.- |--.++.||+++|+|+|+.... .+...+++. ..|..++. -+.++
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~-~d~~~ 327 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP-GDAVA 327 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-CCHHH
Confidence 3455555443 468999998 7732 3456999999999999997653 356666663 67776665 57889
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 409 IEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 409 l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+.++|.+++++ +..+ +++++..++.+.+.-+.+..++++++.+++
T Consensus 328 la~~i~~l~~~---~~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 328 LARALQPYVSD---PAAR---RAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999998 3222 122222222222456788888888888765
No 87
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.78 E-value=1.2e-05 Score=79.08 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=80.8
Q ss_pred CCceeeeccChHH---hhcCCCccceeec---------cCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEe
Q 012613 333 GRGHIVKWAPQQE---VLAHPAVGGFLTH---------GGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLH 399 (460)
Q Consensus 333 ~~~~~~~~vp~~~---ll~~~~~~~~I~H---------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 399 (460)
+++.+.+|+|+.+ ++..+|+ +|.- -|. .++.||+++|+|+|+.... .....+++. ..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEE
Confidence 5678889999764 7888898 7753 244 5689999999999997653 345566663 67877
Q ss_pred cCCccCHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 400 LDGNVERREIEIAVRRVMI-ETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 400 l~~~~~~~~l~~ai~~vl~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
++. -+.+++.++|.++++ | +. ..+++++..++.+.+.-+.+..++++.+.++++
T Consensus 352 v~~-~d~~~la~ai~~l~~~d---~~---~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 352 VPE-NDAQALAQRLAAFSQLD---TD---ELAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred eCC-CCHHHHHHHHHHHHhCC---HH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 765 578999999999999 7 32 122222333333335567899999999988764
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.76 E-value=2.2e-06 Score=82.72 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=67.1
Q ss_pred cCCceeeeccChH---HhhcCCCccceeec----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCcc
Q 012613 332 DGRGHIVKWAPQQ---EVLAHPAVGGFLTH----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNV 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~---~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 404 (460)
.+++.+.+++|+. +++..+|+ +|.- |..+++.||+++|+|+|+....+ ....+.+ .|..+.. -
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~-~ 321 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP-L 321 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC-C
Confidence 3567888999876 47888887 5533 33458999999999999865432 2223333 2333333 4
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 012613 405 ERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLI 454 (460)
Q Consensus 405 ~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (460)
+.+++.++|.++++| +..++...+-+.... +..+.++.+++++
T Consensus 322 ~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~sw~~~~~~~~ 364 (365)
T cd03809 322 DPEALAAAIERLLED---PALREELRERGLARA----KRFSWEKTARRTL 364 (365)
T ss_pred CHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH----HhCCHHHHHHHHh
Confidence 789999999999998 444443333322222 2345666666554
No 89
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.76 E-value=2.9e-06 Score=82.18 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=87.5
Q ss_pred eEEEEEccCcccCCHHHHHHHHHHHhhCC--CceEEEEcCCcccchhhhccCchhHHH-hhcCCceeeeccCh--H---H
Q 012613 274 SVIYVSFGSVVNIDETEFLEIAWGLANSR--VPFLWVVRPGLVREAEWLELLPTGFVE-MLDGRGHIVKWAPQ--Q---E 345 (460)
Q Consensus 274 ~vI~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~vp~--~---~ 345 (460)
+.+++..|.......+.+..+++++.... .+++ .+|.+.. . ..+-+.+.+ ..++++.+.+|+++ . +
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~-ivG~g~~-~----~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLH-IIGDGSD-F----EKCKAYSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEE-EEeCCcc-H----HHHHHHHHHcCCCCeEEEecccCCcHHHHHH
Confidence 45566777764323345667777777653 3333 3343220 1 111111111 12356788888753 2 2
Q ss_pred hhcCCCccceeec----cCchhHHHhHhcCCceeecc-cccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccc
Q 012613 346 VLAHPAVGGFLTH----GGWNSTLESICEGVPMICQP-YLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 346 ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 420 (460)
.+..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+++. ..|..++. -+.+++.++|.++++|+
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-GNIDEFVGKLNKVISGE 325 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-CCHHHHHHHHHHHHhCc
Confidence 4556676 7754 22569999999999999875 332 33456663 67877765 58999999999999985
Q ss_pred c---HHHHHHHHHHHHHH
Q 012613 421 E---GQEMRERILYSKEK 435 (460)
Q Consensus 421 ~---~~~~~~~a~~~~~~ 435 (460)
+ ...++++++++.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 326 VKYQHDAIPNSIERFYEV 343 (359)
T ss_pred ccCCHHHHHHHHHHhhHH
Confidence 3 23444444444443
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.71 E-value=9.4e-06 Score=79.75 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=67.2
Q ss_pred eeeccChHHhhcCCCccceeecc----CchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHH
Q 012613 337 IVKWAPQQEVLAHPAVGGFLTHG----GWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIA 412 (460)
Q Consensus 337 ~~~~vp~~~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~a 412 (460)
+.++.+..+++..+|+ ||.-+ =-.++.||+++|+|+|+.-..+ + ..+.+ .+-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEec---CCHHHHHHH
Confidence 3466666679999988 98774 3568999999999999987543 2 44444 2555444 268899999
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 413 VRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 413 i~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+.++|+++. ...+.++ + +.-+.+.+++++++.++
T Consensus 357 i~~~l~~~~-~~~~~~a-------~----~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 357 TLKALAEEP-APLTDAQ-------R----HELSWEAATERFLRVAD 390 (462)
T ss_pred HHHHHccCc-hhHHHHH-------H----HhCCHHHHHHHHHHHhc
Confidence 999998632 1222211 1 24678888888887763
No 91
>PLN00142 sucrose synthase
Probab=98.69 E-value=1.3e-05 Score=83.26 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=62.3
Q ss_pred cChHHhhc----CCCccceeec---cCch-hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHH
Q 012613 341 APQQEVLA----HPAVGGFLTH---GGWN-STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIA 412 (460)
Q Consensus 341 vp~~~ll~----~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~a 412 (460)
++..+++. .+++ ||.- -|.| ++.||+++|+|+|+.... .....|++. .-|..++. -+++.+.++
T Consensus 654 ~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV~P-~D~eaLA~a 725 (815)
T PLN00142 654 VRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHIDP-YHGDEAANK 725 (815)
T ss_pred ccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-CCHHHHHHH
Confidence 33345544 3455 7754 4555 899999999999986543 456677773 67888776 467778787
Q ss_pred HHHH----hcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 413 VRRV----MIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 413 i~~v----l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
|.++ ++|++ ...+.+++++- +.+..+....++++++..
T Consensus 726 I~~lLekLl~Dp~lr~~mg~~Ar~r-------v~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 726 IADFFEKCKEDPSYWNKISDAGLQR-------IYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHH
Confidence 7665 46622 23333333222 223455677777776654
No 92
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.68 E-value=1.6e-05 Score=80.04 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=95.6
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhh---CCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChH---Hh
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLAN---SRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQ---EV 346 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~---~l 346 (460)
+..+++..|.... .+.+..+++|+.. .+.+++++ +.+.. . ....-..+.++.+.++.+....+.. .+
T Consensus 290 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~-G~g~~-~---~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 290 DVPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVL-GTGDP-E---LEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEE-CCCCH-H---HHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 3456666777764 2333444444443 34555544 33210 0 0001111222334555666555553 48
Q ss_pred hcCCCccceeecc---Cch-hHHHhHhcCCceeecccccchhhhHHHhhhhh------eeeEecCCccCHHHHHHHHHHH
Q 012613 347 LAHPAVGGFLTHG---GWN-STLESICEGVPMICQPYLGDQMVNARYISHVW------RLGLHLDGNVERREIEIAVRRV 416 (460)
Q Consensus 347 l~~~~~~~~I~HG---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~G~~l~~~~~~~~l~~ai~~v 416 (460)
+..+|+ +|.-. |.| +.+||+++|+|+|+-...+ ....|.+ . +.|..++. -+++++.++|.++
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~-~~~~~~~~~G~l~~~-~d~~~la~~i~~~ 434 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVD-GDPEAESGTGFLFEE-YDPGALLAALSRA 434 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEec-CCCCCCCCceEEeCC-CCHHHHHHHHHHH
Confidence 888888 77543 444 7889999999999876543 2222222 2 67777765 5788999999999
Q ss_pred hc----cccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 417 MI----ETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 417 l~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
+. + +. ..+++++. ++.+.-+.++.++++++.++++
T Consensus 435 l~~~~~~---~~---~~~~~~~~---~~~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 435 LRLYRQD---PS---LWEALQKN---AMSQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHhcC---HH---HHHHHHHH---HhccCCCcHHHHHHHHHHHHhC
Confidence 87 4 22 22223322 2336788999999999988764
No 93
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.66 E-value=1.4e-05 Score=80.31 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=92.9
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhh---CCCceEEEEcCCcccchhhhccCchhHHHhhcCCcee-eeccCh--HHh
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLAN---SRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHI-VKWAPQ--QEV 346 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~vp~--~~l 346 (460)
+.++++..|.... .+.+..+++|++. .+.+++++ +++...-.+ .+ ....++.+.++.+ ..|-.. ..+
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lviv-G~g~~~~~~---~l-~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLL-GTGDPELEE---AF-RALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEE-ecCcHHHHH---HH-HHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 4556666777653 3334445555543 35666555 332100000 01 1122233344443 355222 247
Q ss_pred hcCCCccceeec---cCch-hHHHhHhcCCceeeccccc--chhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccc
Q 012613 347 LAHPAVGGFLTH---GGWN-STLESICEGVPMICQPYLG--DQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 347 l~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 420 (460)
+..+|+ +|.- -|.| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++. -+++++.++|.++++..
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l~~~ 429 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRALELY 429 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHHHh
Confidence 889998 7754 3555 7889999999999875532 211111111232 67877766 57899999999998631
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 421 EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.... ..+++++. ++.+.-+.++.++++++.+++
T Consensus 430 ~~~~---~~~~~~~~---~~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 430 RQPP---LWRALQRQ---AMAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred cCHH---HHHHHHHH---HhccCCChHHHHHHHHHHHHH
Confidence 0011 12222222 223567888999998887764
No 94
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.63 E-value=1.1e-05 Score=79.69 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=55.7
Q ss_pred cCCceeeeccChHH---hhcCCCccceeecc---Cc-hhHHHhHhcCCceeecccccchhhhHHHhh---hhheeeEecC
Q 012613 332 DGRGHIVKWAPQQE---VLAHPAVGGFLTHG---GW-NSTLESICEGVPMICQPYLGDQMVNARYIS---HVWRLGLHLD 401 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---ll~~~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~~G~G~~l~ 401 (460)
.+++.+.+++|+.+ +|..+++ +|+-. |. -++.||+++|+|+|+.-..+. ....++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 35778889998764 8888887 66422 22 388999999999998654332 122233 32 566553
Q ss_pred CccCHHHHHHHHHHHhcc
Q 012613 402 GNVERREIEIAVRRVMIE 419 (460)
Q Consensus 402 ~~~~~~~l~~ai~~vl~~ 419 (460)
-+++++.++|.+++++
T Consensus 377 --~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 --STAEEYAEAIEKILSL 392 (419)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2899999999999986
No 95
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=1.7e-05 Score=74.11 Aligned_cols=348 Identities=13% Similarity=0.105 Sum_probs=185.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcc
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCV 94 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
++|.+++.-.+|++.- -.|.++|.+|=-+|.|++-. .....+ .|++ + -++....+.+.+.+.+..... ..
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvg-G~~m~a--eG~~--s---l~~~~elsvmGf~EVL~~lp~-ll 71 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVG-GEKMEA--EGLE--S---LFDMEELSVMGFVEVLGRLPR-LL 71 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEec-cHHHHh--ccCc--c---ccCHHHHHHhhHHHHHHHHHH-HH
Confidence 7899999999999875 46888998872277776653 111111 2321 1 111111222333333333222 22
Q ss_pred hhHHHHHHHhhccCCCCCCCeeEEE-ECCcchhHHHHHHH---cC--CCeEEEe-CccHHHHHHHHhchhhhhcCCCCCC
Q 012613 95 VPFWDCLVKLTSISNVQEDSFACII-TDPLWYFVHAVAND---FK--LPTIILQ-TSSVSAYLAFAAYPILREKCYLPIQ 167 (460)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~~pDlvi-~D~~~~~~~~vA~~---lg--IP~v~~~-~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (460)
...+++++.+.+ . +||++| .|.-.+ ...++++ .| ||.|.+. ++-+
T Consensus 72 k~~~~~~~~i~~-----~-kpD~~i~IDsPdF-nl~vak~lrk~~p~i~iihYV~PsVW--------------------- 123 (381)
T COG0763 72 KIRRELVRYILA-----N-KPDVLILIDSPDF-NLRVAKKLRKAGPKIKIIHYVSPSVW--------------------- 123 (381)
T ss_pred HHHHHHHHHHHh-----c-CCCEEEEeCCCCC-chHHHHHHHHhCCCCCeEEEECccee---------------------
Confidence 234567777766 5 899988 665543 4445444 45 9988753 3210
Q ss_pred CCcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCccccc-ccc
Q 012613 168 DSQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIG-PFH 246 (460)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vG-pl~ 246 (460)
.|+. ++. .......|.++. ..-||+..++.. +.|.+||| |+.
T Consensus 124 --------------AWr~------~Ra----------~~i~~~~D~lLa--ilPFE~~~y~k~-----g~~~~yVGHpl~ 166 (381)
T COG0763 124 --------------AWRP------KRA----------VKIAKYVDHLLA--ILPFEPAFYDKF-----GLPCTYVGHPLA 166 (381)
T ss_pred --------------eech------hhH----------HHHHHHhhHeee--ecCCCHHHHHhc-----CCCeEEeCChhh
Confidence 0100 111 111122333332 233665543433 45699999 544
Q ss_pred cCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhh-----CCCceEEEEcCCcccchhhhc
Q 012613 247 KYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLAN-----SRVPFLWVVRPGLVREAEWLE 321 (460)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~ 321 (460)
...+. .+....+.+-+....+++++.+--||-.+.-...+..+.++.++ .+.++++-+..... +
T Consensus 167 d~i~~-----~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~------~ 235 (381)
T COG0763 167 DEIPL-----LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY------R 235 (381)
T ss_pred hhccc-----cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH------H
Confidence 43321 22222234444444577899999999876222223333333332 24677766554321 1
Q ss_pred cCchhHHHhhcCCc-eeeec-cChH--HhhcCCCccceeeccCchhHHHhHhcCCceeecc-cccchhhhHHHhhhh---
Q 012613 322 LLPTGFVEMLDGRG-HIVKW-APQQ--EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQP-YLGDQMVNARYISHV--- 393 (460)
Q Consensus 322 ~l~~~~~~~~~~~~-~~~~~-vp~~--~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~--- 393 (460)
.+-..+ ...+. ...-+ +++. ..+..||+ .+.-+|- -++|+..+|+|||+.= +..=-...+.+..+-
T Consensus 236 ~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yi 309 (381)
T COG0763 236 RIIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYV 309 (381)
T ss_pred HHHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcc
Confidence 111111 11111 11122 2322 37888887 6666664 5789999999999862 111112233333330
Q ss_pred --------heeeEecCC-ccCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 394 --------WRLGLHLDG-NVERREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 394 --------~G~G~~l~~-~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
..+..++-. +.+++.|.+++..++.|+. ...+++....+++.++ .+...+.+++.+++.++
T Consensus 310 sLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 310 SLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred cchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 022222222 5889999999999999952 3467777778888777 66688888888888764
No 96
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.57 E-value=6.7e-05 Score=73.08 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCceeeecc--ChH---HhhcCCCccceeecc---C-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCc
Q 012613 333 GRGHIVKWA--PQQ---EVLAHPAVGGFLTHG---G-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGN 403 (460)
Q Consensus 333 ~~~~~~~~v--p~~---~ll~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (460)
+++.+..+. ++. +++..+|+ ||.-+ | -.++.||+++|+|+|+.... .....+.+. ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 456777776 433 47888888 87643 2 34999999999999987643 234456663 6676544
Q ss_pred cCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 404 VERREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 404 ~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
+.+.+..+|.+++++++ .+.+.+++++.. . +.-+.+..++++++.++++
T Consensus 323 -~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~---~----~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 323 -TVEEAAVRILYLLRDPELRRKMGANAREHV---R----ENFLITRHLKDYLYLISKL 372 (372)
T ss_pred -CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH---H----HHcCHHHHHHHHHHHHHhC
Confidence 45678889999998832 223333333322 2 3456888899998888753
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.54 E-value=1e-05 Score=78.14 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=86.0
Q ss_pred EEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChH---HhhcCCCcc
Q 012613 277 YVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQ---EVLAHPAVG 353 (460)
Q Consensus 277 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~---~ll~~~~~~ 353 (460)
++..|+.. ..+....++++++..+.+++++-.+.. .+.+.+...+|+.+.+++|+. +++..+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~----------~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPE----------LDRLRAKAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChh----------HHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 44567665 335567788888887766655543321 123333445778999999985 47889898
Q ss_pred ceee--ccCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccc
Q 012613 354 GFLT--HGGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 354 ~~I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 420 (460)
+|. .-|. .++.||+++|+|+|+....+ ....+++. +.|..++. -+.+.+.++|.++++|+
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKNE 327 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhCc
Confidence 664 2333 35789999999999986543 44556663 68887776 47888999999999984
No 98
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.52 E-value=4.1e-05 Score=73.94 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=56.1
Q ss_pred CCceeeeccCh-HHhhcCCCccceeec----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 333 GRGHIVKWAPQ-QEVLAHPAVGGFLTH----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 333 ~~~~~~~~vp~-~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
+++.+.++..+ .+++..+++ +|+- |-..++.||+++|+|+|+....+ ....+++ +.|..... -+++
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-~~~~ 319 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-ESPE 319 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-CCHH
Confidence 45677777554 458989888 7754 34678999999999999876544 3344444 44444433 3589
Q ss_pred HHHHHHHHHhcc
Q 012613 408 EIEIAVRRVMIE 419 (460)
Q Consensus 408 ~l~~ai~~vl~~ 419 (460)
++.++|.++++|
T Consensus 320 ~~a~~i~~l~~~ 331 (358)
T cd03812 320 IWAEEILKLKSE 331 (358)
T ss_pred HHHHHHHHHHhC
Confidence 999999999999
No 99
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.52 E-value=5.9e-07 Score=71.32 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=81.2
Q ss_pred CeEEEEEccCcccCC---HHHHHHHHHHHhhCCC-ceEEEEcCCcccchhhhccCchhHHHhhc-CC--ceeeeccCh-H
Q 012613 273 KSVIYVSFGSVVNID---ETEFLEIAWGLANSRV-PFLWVVRPGLVREAEWLELLPTGFVEMLD-GR--GHIVKWAPQ-Q 344 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~vp~-~ 344 (460)
...+|||-||..... .-......+.|.+.|. +.++..+.+.. ..++.+.+-.. +. +...+|-|- .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------FFGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------CCCCHHHhhcccCCeEEEEEecCccHH
Confidence 368999999987511 1122346677777775 56777776531 11222211111 11 123477775 5
Q ss_pred HhhcCCCccceeeccCchhHHHhHhcCCceeecc----cccchhhhHHHhhhhheeeEecCC
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQP----YLGDQMVNARYISHVWRLGLHLDG 402 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P----~~~DQ~~na~~v~~~~G~G~~l~~ 402 (460)
+..+.+++ +|.|+|+||++|.|..|+|.|+++ +...|-.-|..+++ .|.=..-..
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 67778898 999999999999999999999999 46789999999999 476544443
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=0.00029 Score=73.10 Aligned_cols=112 Identities=16% Similarity=0.089 Sum_probs=77.4
Q ss_pred CCceeeeccChH-HhhcCCCccceee---ccC-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-ccCH
Q 012613 333 GRGHIVKWAPQQ-EVLAHPAVGGFLT---HGG-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-NVER 406 (460)
Q Consensus 333 ~~~~~~~~vp~~-~ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~ 406 (460)
+++.+.+|.+.. .+|..+++ ||. +.| -+++.||+.+|+|+|+.... .....|++. ..|..++. +.++
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d~~~ 646 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADTVTA 646 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCCCCh
Confidence 567888888754 58999998 775 455 45899999999999998653 355667663 57888876 6677
Q ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 407 REIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 407 ~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+++.+++.+++.+.. .+.+++++++..+ +.-+..+.++++++.++
T Consensus 647 ~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 647 PDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHhC
Confidence 777777777665310 1456655544332 34568888888887764
No 101
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.51 E-value=3.6e-06 Score=81.27 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=92.1
Q ss_pred CCeEEEEEccCcc--c-CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhh--cCCceeeeccC---h
Q 012613 272 PKSVIYVSFGSVV--N-IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEML--DGRGHIVKWAP---Q 343 (460)
Q Consensus 272 ~~~vI~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~vp---~ 343 (460)
+++.+++++=... . ...+.+..+++++.+.+.+++++.+... ++. ..+-+.+.+.. ..|+.+.+.++ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~---~~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGS---RIINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCc---hHHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3468888885543 2 4567889999999887766666553321 110 00111122111 24667776555 4
Q ss_pred HHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHH
Q 012613 344 QEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQ 423 (460)
Q Consensus 344 ~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~ 423 (460)
..++.++++ +|+.++.|. .||...|+|+|.+- +.+ .-++. |..+.+ ...++++|.+++.+++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~~--g~nvl~-vg~~~~~I~~a~~~~~~~---- 339 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRLR--ADSVID-VDPDKEEIVKAIEKLLDP---- 339 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhhh--cCeEEE-eCCCHHHHHHHHHHHhCh----
Confidence 568999998 999886666 99999999999875 211 11111 332221 146889999999995543
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012613 424 EMRERILYSKEKAHLCLKPGGSSYQSLERLIDH 456 (460)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (460)
.++++. .. ..+..|..++.+++++.
T Consensus 340 ~~~~~~-------~~-~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 340 AFKKSL-------KN-VKNPYGDGNSSERIIEI 364 (365)
T ss_pred HHHHHH-------hh-CCCCCCCChHHHHHHHh
Confidence 332221 11 11344555666666664
No 102
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.49 E-value=3.4e-05 Score=73.68 Aligned_cols=340 Identities=17% Similarity=0.121 Sum_probs=169.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchh
Q 012613 17 VILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVVP 96 (460)
Q Consensus 17 Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (460)
|.+++.-.+|+..- -.|+++|.+++-++.|++-... .... .|++... +-...+-..+.+.+..+ ......
T Consensus 1 I~i~AGE~SGD~~g-a~Li~~Lk~~~p~~~~~GvGG~-~M~~--~G~~~l~-----d~~~lsvmG~~Evl~~l-~~~~~~ 70 (373)
T PF02684_consen 1 IFISAGEASGDLHG-ARLIRALKARDPDIEFYGVGGP-RMQA--AGVESLF-----DMEELSVMGFVEVLKKL-PKLKRL 70 (373)
T ss_pred CEEEeeCccHHHHH-HHHHHHHHhhCCCcEEEEEech-HHHh--CCCceec-----chHHhhhccHHHHHHHH-HHHHHH
Confidence 45566666777764 4788999988767766554211 1111 2443211 11111123333333332 233334
Q ss_pred HHHHHHHhhccCCCCCCCeeEEE-ECCcchh--HHHHHHHcCCC--eEEEe-CccHHHHHHHHhchhhhhcCCCCCCCCc
Q 012613 97 FWDCLVKLTSISNVQEDSFACII-TDPLWYF--VHAVANDFKLP--TIILQ-TSSVSAYLAFAAYPILREKCYLPIQDSQ 170 (460)
Q Consensus 97 l~~~l~~l~~~~~~~~~~pDlvi-~D~~~~~--~~~vA~~lgIP--~v~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (460)
++++.+.+.+ . +||+|| .|.-.+. ..-.+++.|+| ++.+. ++-
T Consensus 71 ~~~~~~~~~~-----~-~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~Pqv------------------------- 119 (373)
T PF02684_consen 71 FRKLVERIKE-----E-KPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQV------------------------- 119 (373)
T ss_pred HHHHHHHHHH-----c-CCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCce-------------------------
Confidence 5556666666 5 899987 7755532 23356677888 55542 220
Q ss_pred ccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCccccc-ccccCC
Q 012613 171 LEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIG-PFHKYF 249 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vG-pl~~~~ 249 (460)
+.|+. ++. +.+. ...|.+++ ..-||.+.++.. +.++.||| |+....
T Consensus 120 ----------WAWr~------~R~----~~i~------~~~D~ll~--ifPFE~~~y~~~-----g~~~~~VGHPl~d~~ 166 (373)
T PF02684_consen 120 ----------WAWRP------GRA----KKIK------KYVDHLLV--IFPFEPEFYKKH-----GVPVTYVGHPLLDEV 166 (373)
T ss_pred ----------eeeCc------cHH----HHHH------HHHhheeE--CCcccHHHHhcc-----CCCeEEECCcchhhh
Confidence 11110 111 1111 12232232 223555433332 46799999 655543
Q ss_pred CCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHh---hC--CCceEEEEcCCcccchhhhccCc
Q 012613 250 PASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLA---NS--RVPFLWVVRPGLVREAEWLELLP 324 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~---~~--~~~~i~~~~~~~~~~~~~~~~l~ 324 (460)
.. ........+.+ -..++++|-+--||-..--...+..++++.+ +. +.++++....... ...-
T Consensus 167 ~~-----~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~------~~~i 234 (373)
T PF02684_consen 167 KP-----EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVH------EELI 234 (373)
T ss_pred cc-----CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHH------HHHH
Confidence 32 11121122222 2246789999999987522223333444433 22 3455555433210 0000
Q ss_pred hhHHHhhcCCceeeec-cChHHhhcCCCccceeeccCchhHHHhHhcCCceeec-ccccchhhhHHHhhhhhee------
Q 012613 325 TGFVEMLDGRGHIVKW-APQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQ-PYLGDQMVNARYISHVWRL------ 396 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~~-vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~------ 396 (460)
..+......++.+.-. -.-.++|..+++ .+.-+|- .|+|+...|+|+|++ -+..=-+..|+++.+ ...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Ni 310 (373)
T PF02684_consen 235 EEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNI 310 (373)
T ss_pred HHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhh
Confidence 0111111122222211 234568888888 6666664 689999999999987 233223445555544 222
Q ss_pred ------eEecCC-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHH
Q 012613 397 ------GLHLDG-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQS 449 (460)
Q Consensus 397 ------G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (460)
-.++-. +.|++.+.+++.++|+| ...++..+...+.+++..+.+.++..+
T Consensus 311 ia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 311 IAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred hcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 122222 68999999999999999 444444444444444444355544443
No 103
>PLN02316 synthase/transferase
Probab=98.48 E-value=0.00032 Score=74.94 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=79.5
Q ss_pred CCceeeeccChH---HhhcCCCccceeecc---C-chhHHHhHhcCCceeeccccc--chhhh-------HHHhhhhhee
Q 012613 333 GRGHIVKWAPQQ---EVLAHPAVGGFLTHG---G-WNSTLESICEGVPMICQPYLG--DQMVN-------ARYISHVWRL 396 (460)
Q Consensus 333 ~~~~~~~~vp~~---~ll~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~~G~ 396 (460)
+++.+....+.. .++..+|+ ||.-+ | -.+.+||+++|+|.|+....+ |.-.. +...... +-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 455665555543 58989998 88643 2 238999999999998875543 22111 1100111 35
Q ss_pred eEecCCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 397 GLHLDGNVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 397 G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
|...+. -+++.|..+|.+++.+ |.+....+++..+.++...-|..+.+++.++.+++
T Consensus 977 Gflf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 977 GFSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred eEEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 655555 6888999999999976 44555556666676677888999999999988764
No 104
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.45 E-value=0.00011 Score=74.14 Aligned_cols=170 Identities=14% Similarity=0.081 Sum_probs=92.2
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHh---hCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChH---Hh
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLA---NSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQ---EV 346 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~---~l 346 (460)
+..+++..|.... .+.+..++++++ +.+.+++++-.+.. . ....-....++..+|+.+....++. .+
T Consensus 295 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 295 DAPLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGDP--E---YEEALRELAARYPGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CCCEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCCH--H---HHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence 4556666777663 233444444443 33445554433211 0 0000011112223555655333433 47
Q ss_pred hcCCCccceeecc---Cc-hhHHHhHhcCCceeeccccc--chhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccc
Q 012613 347 LAHPAVGGFLTHG---GW-NSTLESICEGVPMICQPYLG--DQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 347 l~~~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 420 (460)
+..+|+ +|.-. |. .+.+||+++|+|+|+....+ |.-.+...-.+. |.|..++. -+++++.++|.++++..
T Consensus 368 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-~~~~~l~~~i~~~l~~~ 443 (476)
T cd03791 368 YAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-YNADALLAALRRALALY 443 (476)
T ss_pred HHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-CCHHHHHHHHHHHHHHH
Confidence 888888 77532 33 37789999999999876543 211111111132 57888776 56899999999998641
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 421 EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
. -++..+++++.. +...-+.++.++++++.+++
T Consensus 444 ~---~~~~~~~~~~~~---~~~~fsw~~~a~~~~~~y~~ 476 (476)
T cd03791 444 R---DPEAWRKLQRNA---MAQDFSWDRSAKEYLELYRS 476 (476)
T ss_pred c---CHHHHHHHHHHH---hccCCChHHHHHHHHHHHhC
Confidence 1 022223333332 23567888889998887753
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.42 E-value=0.00041 Score=67.56 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCceeeeccChHH---hhcCCCccceee--------ccCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEec
Q 012613 333 GRGHIVKWAPQQE---VLAHPAVGGFLT--------HGGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHL 400 (460)
Q Consensus 333 ~~~~~~~~vp~~~---ll~~~~~~~~I~--------HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 400 (460)
.|+.+.+++|+.+ .+.++|+ +|. .++. +.+.|++++|+|+|+.++ ...++. .+ |..+
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv--~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~ 322 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDV--AILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVL 322 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCE--EecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEE
Confidence 6779999999765 7888898 442 2333 358999999999998763 233333 23 3222
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 401 DGNVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 401 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.. -+++++.++|.+++.++....++++ + . +. +..+.++.++++++.+++
T Consensus 323 ~~-~d~~~~~~ai~~~l~~~~~~~~~~~-~---~-~~----~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 323 IA-DDPEEFVAAIEKALLEDGPARERRR-L---R-LA----AQNSWDARAAEMLEALQE 371 (373)
T ss_pred eC-CCHHHHHHHHHHHHhcCCchHHHHH-H---H-HH----HHCCHHHHHHHHHHHHHh
Confidence 22 3799999999998765321222221 1 1 22 456788888888877654
No 106
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.41 E-value=0.00022 Score=71.36 Aligned_cols=331 Identities=12% Similarity=0.044 Sum_probs=169.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcc
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCV 94 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
.||.+++...+||+.- -.|.++|+++.-++.+.+-... ...+ .|++. + .+.+...-..+.+.+..+ ....
T Consensus 227 ~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~-~M~a--aG~e~--l---~d~~eLsVmG~~EVL~~l-~~l~ 296 (608)
T PRK01021 227 TSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGP-QMRA--EGFHP--L---FNMEEFQVSGFWEVLLAL-FKLW 296 (608)
T ss_pred CeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccH-HHHh--CcCcc--c---CChHHhhhhhHHHHHHHH-HHHH
Confidence 5788888888888875 4577888888666766544211 1111 23321 1 111111122233333332 2333
Q ss_pred hhHHHHHHHhhccCCCCCCCeeEEE-ECCcch--hHHHHHHHcCC--CeEEEeCccHHHHHHHHhchhhhhcCCCCCCCC
Q 012613 95 VPFWDCLVKLTSISNVQEDSFACII-TDPLWY--FVHAVANDFKL--PTIILQTSSVSAYLAFAAYPILREKCYLPIQDS 169 (460)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~~pDlvi-~D~~~~--~~~~vA~~lgI--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (460)
..++++.+.+.+ . +||++| .|.-.+ -..-.+++.|+ |++.+.+..
T Consensus 297 ~~~~~l~~~i~~-----~-kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq------------------------ 346 (608)
T PRK01021 297 YRYRKLYKTILK-----T-NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS------------------------ 346 (608)
T ss_pred HHHHHHHHHHHh-----c-CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc------------------------
Confidence 445566677766 5 899988 465543 23346777886 988853310
Q ss_pred cccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHHhhhccccEEEEcCchhccHHHHHHhhhhcCCCCccccc-ccccC
Q 012613 170 QLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMVSLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIG-PFHKY 248 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vG-pl~~~ 248 (460)
.+.|+. ++.+...+ ..|..++ ..-||.+.++. .+.++.||| |+...
T Consensus 347 ----------VWAWR~------~Rikki~k----------~vD~ll~--IfPFE~~~y~~-----~gv~v~yVGHPL~d~ 393 (608)
T PRK01021 347 ----------IWAWRP------KRKTILEK----------YLDLLLL--ILPFEQNLFKD-----SPLRTVYLGHPLVET 393 (608)
T ss_pred ----------ceeeCc------chHHHHHH----------Hhhhhee--cCccCHHHHHh-----cCCCeEEECCcHHhh
Confidence 011110 11111112 2222222 22355554333 247799999 55544
Q ss_pred CCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHh--hC--CCceEEEEcCCcccchhhhccCc
Q 012613 249 FPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLA--NS--RVPFLWVVRPGLVREAEWLELLP 324 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~l~ 324 (460)
.+. .+...+..+-+.-.+++++|-+--||-...-...+..++++.+ .. +.++++...... ..
T Consensus 394 i~~-----~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---------~~ 459 (608)
T PRK01021 394 ISS-----FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---------YD 459 (608)
T ss_pred ccc-----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---------hH
Confidence 221 1111112233333346689999999987533344455666665 32 345544332211 11
Q ss_pred hhHHHhhcC----CceeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeec-ccccchhhhHHHhhh-------
Q 012613 325 TGFVEMLDG----RGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQ-PYLGDQMVNARYISH------- 392 (460)
Q Consensus 325 ~~~~~~~~~----~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~------- 392 (460)
+.+.+...+ ++.+..--...+++..||+ .+.-+|- .|+|+...|+|+|++ -+..=-...++++.+
T Consensus 460 ~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIs 536 (608)
T PRK01021 460 HLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYS 536 (608)
T ss_pred HHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeee
Confidence 222221111 1122210012579999998 7777774 678999999999996 222212334454443
Q ss_pred -------hheeeEecC--C-ccCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Q 012613 393 -------VWRLGLHLD--G-NVERREIEIAVRRVMIETE-GQEMRERILYSKEKAH 437 (460)
Q Consensus 393 -------~~G~G~~l~--~-~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~ 437 (460)
+ .+=.++- . +.|++.|.+++ ++|.|++ .+.+++..+++++.+.
T Consensus 537 LpNIIagr-~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 537 LPNIILGS-TIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred hhHHhcCC-CcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 1 2223333 2 57899999997 8887732 3455555555555553
No 107
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=0.00033 Score=66.37 Aligned_cols=330 Identities=14% Similarity=0.120 Sum_probs=177.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCCCCCCCCC--CCCeEEEEcCCCCCCCccCcccHHHHHHHHH
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSK--GFSITIIH-TNLNPLNACN--YPHFEFHSISASLSETEASTEDMVAILIALN 90 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~-~~~~~~~~~~--~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
-.+-+=.-|.|-++-..+|.++|.++ +..+++-+ |+...+.... ...+...-+|-+++ ..
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~----------~~----- 114 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP----------IA----- 114 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch----------HH-----
Confidence 34445555779999999999999999 88888765 4422222111 12355555663332 11
Q ss_pred HhcchhHHHHHHHhhccCCCCCCCeeEEEECCcc--hhHHHHHHHcCCCeEEEeCccHHHHHHHHhchhhhhcCCCCCCC
Q 012613 91 AKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW--YFVHAVANDFKLPTIILQTSSVSAYLAFAAYPILREKCYLPIQD 168 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (460)
.+..++.+ +||++|.--.- +..+.-++..|||.+.+.-- +...++
T Consensus 115 ------v~rFl~~~---------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------LS~rS~----- 161 (419)
T COG1519 115 ------VRRFLRKW---------RPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------LSDRSF----- 161 (419)
T ss_pred ------HHHHHHhc---------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------echhhh-----
Confidence 11222222 78887643333 33445688999999996321 111111
Q ss_pred CcccccccCCCCCCCCCCCCCcCCCCCcHHHHHHHHH-hhhccccEEEEcCchhccHHHHHHhhhhcCCCCccccccccc
Q 012613 169 SQLEARVIECPPLRVKDIPIFETGDPKNVDKVISAMV-SLIKASSGIIWNSYRELEQVELTTIHHQYFSIPVFPIGPFHK 247 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~pv~~vGpl~~ 247 (460)
. .+..+.... ..+.+-++++.++-..- ..+..+ ..+++...|-+-.
T Consensus 162 -----------------------~----~y~k~~~~~~~~~~~i~li~aQse~D~--~Rf~~L----Ga~~v~v~GNlKf 208 (419)
T COG1519 162 -----------------------A----RYAKLKFLARLLFKNIDLILAQSEEDA--QRFRSL----GAKPVVVTGNLKF 208 (419)
T ss_pred -----------------------H----HHHHHHHHHHHHHHhcceeeecCHHHH--HHHHhc----CCcceEEecceee
Confidence 0 111122222 22345566666665333 222222 1244888887776
Q ss_pred CCCCCCCCcccccc-cchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCC--CceEEEEcCCcc-cch-hhh--
Q 012613 248 YFPASSSSLLSQDE-SCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSR--VPFLWVVRPGLV-REA-EWL-- 320 (460)
Q Consensus 248 ~~~~~~~~~~~~~~-~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~-~~~-~~~-- 320 (460)
+... .+... .+..|=..-+....+++.-+|... ..+.+.....++.+.. ...||+=+-... ... +..
T Consensus 209 d~~~-----~~~~~~~~~~~r~~l~~~r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~ 282 (419)
T COG1519 209 DIEP-----PPQLAAELAALRRQLGGHRPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKR 282 (419)
T ss_pred cCCC-----ChhhHHHHHHHHHhcCCCCceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHH
Confidence 6433 11111 112222221121355555566432 3344555667776643 344454332110 000 000
Q ss_pred ccCchhHHHh-----hcCCceeeeccCh-HHhhcCCCc----cceeeccCchhHHHhHhcCCceeecccccchhhhHHHh
Q 012613 321 ELLPTGFVEM-----LDGRGHIVKWAPQ-QEVLAHPAV----GGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYI 390 (460)
Q Consensus 321 ~~l~~~~~~~-----~~~~~~~~~~vp~-~~ll~~~~~----~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 390 (460)
..+.-...++ ...++.+.|-+-- ..++.-+++ +-++-+||+| ..|+++.|+|+|.=|....|.+-++++
T Consensus 283 ~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l 361 (419)
T COG1519 283 KGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL 361 (419)
T ss_pred cCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH
Confidence 0000000000 0123455554442 234444444 1145688886 689999999999999999999999999
Q ss_pred hhhheeeEecCCccCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Q 012613 391 SHVWRLGLHLDGNVERREIEIAVRRVMIETE-GQEMRERILYSKEKAH 437 (460)
Q Consensus 391 ~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~ 437 (460)
+.+ |+|+.++. ++.+.+++..+++|+. ...|.+++..+=...+
T Consensus 362 ~~~-ga~~~v~~---~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 362 LQA-GAGLQVED---ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred Hhc-CCeEEECC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 995 99998876 7789999999998743 4455566655555544
No 108
>PLN02949 transferase, transferring glycosyl groups
Probab=98.36 E-value=0.00061 Score=67.91 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=70.8
Q ss_pred cCCceeeeccChHH---hhcCCCccceee---ccCch-hHHHhHhcCCceeecccccchhhhHHHhhh-hhe-eeEecCC
Q 012613 332 DGRGHIVKWAPQQE---VLAHPAVGGFLT---HGGWN-STLESICEGVPMICQPYLGDQMVNARYISH-VWR-LGLHLDG 402 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G-~G~~l~~ 402 (460)
.+++.+..++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.. .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 35678889998654 7888887 773 33444 799999999999998754310 111111 001 23222
Q ss_pred ccCHHHHHHHHHHHhccc-c-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 403 NVERREIEIAVRRVMIET-E-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 403 ~~~~~~l~~ai~~vl~~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
. +.+++.++|.++++++ + ...+.+++++-.+ .-+.++..+++.+.+++
T Consensus 407 ~-~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~--------~FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 T-TVEEYADAILEVLRMRETERLEIAAAARKRAN--------RFSEQRFNEDFKDAIRP 456 (463)
T ss_pred C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHH
Confidence 2 7899999999999842 1 2234444443332 25688888888777654
No 109
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.34 E-value=0.0013 Score=64.74 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=85.6
Q ss_pred EEEEccCcccCCHHHHHHHHHHHhhCCCce-EEEEcCCcccchhhhccCchhHHHhhcCCceeeeccC-h---HHhhcCC
Q 012613 276 IYVSFGSVVNIDETEFLEIAWGLANSRVPF-LWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAP-Q---QEVLAHP 350 (460)
Q Consensus 276 I~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp-~---~~ll~~~ 350 (460)
+++..|.......+....+++|+...+.++ ++.+|... ...+ .++....+.. + .++++.+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-------~~~~--------~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-------PFTA--------GNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-------cccc--------cceEEecCcCCHHHHHHHHHhC
Confidence 334445422222344567888888765443 34444321 0011 2224445543 2 3467778
Q ss_pred Cccceeecc----CchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHHHH
Q 012613 351 AVGGFLTHG----GWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQEMR 426 (460)
Q Consensus 351 ~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~ 426 (460)
|+ ||.-+ --.++.||+++|+|+|+....+ ..+.+.. +-|..++. -+.+.|+++++..+.+ ..+.
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-~d~~~La~~~~~~~~~---~~~~ 375 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFG 375 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-CCHHHHHhccCHHHHH---Hhhh
Confidence 87 87643 2458999999999999998765 2233333 56877766 4667777654322222 1111
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 427 ERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
+..+.-++... +.-+....+++.++.++++
T Consensus 376 ~~~~~~r~~~~----~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 376 TTLAEFSQRSR----AAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred hHHHHHHHHHH----HhCCHHHHHHHHHHHHHhC
Confidence 11112222222 5567889999999888764
No 110
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.23 E-value=0.00013 Score=69.88 Aligned_cols=161 Identities=14% Similarity=0.210 Sum_probs=89.5
Q ss_pred CCCeEEEEEccCcccCC----HHHHHHHHHHHhhC-CCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccCh--
Q 012613 271 APKSVIYVSFGSVVNID----ETEFLEIAWGLANS-RVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQ-- 343 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~----~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~-- 343 (460)
..++.+++++=...... ...+..+++++.+. +.++||....+.... ..+-+.+ ++. +|+.+...+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~----~~i~~~l-~~~-~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS----DIIIEKL-KKY-DNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH----HHHHHHH-TT--TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH----HHHHHHh-ccc-CCEEEECCCCHHH
Confidence 57789999985544433 24556667777665 677888887433111 1111111 122 36788766654
Q ss_pred -HHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccH
Q 012613 344 -QEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEG 422 (460)
Q Consensus 344 -~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~ 422 (460)
..+|.++++ +|+.+| |-.-||...|+|+|.+=..++.+..-. . |..+.+. .+.+.|.+++++++++
T Consensus 252 ~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~---~--~~nvlv~--~~~~~I~~ai~~~l~~--- 318 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQEGRE---R--GSNVLVG--TDPEAIIQAIEKALSD--- 318 (346)
T ss_dssp HHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HHHHH---T--TSEEEET--SSHHHHHHHHHHHHH----
T ss_pred HHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHHHHh---h--cceEEeC--CCHHHHHHHHHHHHhC---
Confidence 568999998 999999 555599999999999944444433222 2 4554433 6899999999999987
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 423 QEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
....++.+... +..|..++.+.+++.|+
T Consensus 319 ~~~~~~~~~~~--------npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 319 KDFYRKLKNRP--------NPYGDGNASERIVEILK 346 (346)
T ss_dssp HHHHHHHHCS----------TT-SS-HHHHHHHHHH
T ss_pred hHHHHhhccCC--------CCCCCCcHHHHHHHhhC
Confidence 44444333322 23345555666666553
No 111
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.13 E-value=0.00011 Score=71.63 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=81.4
Q ss_pred hcCCceeeeccChHH---hhcCCCccceeec----cCc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC
Q 012613 331 LDGRGHIVKWAPQQE---VLAHPAVGGFLTH----GGW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG 402 (460)
Q Consensus 331 ~~~~~~~~~~vp~~~---ll~~~~~~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 402 (460)
...++.+.+++|+.+ ++..+|+ +|.. .|. .++.||+++|+|+|+.... .+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 345678889998654 6989998 7753 333 5778999999999997753 355666663 67865543
Q ss_pred ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 403 NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 403 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
..+.+++.++|.++++| +..++ +++..++...+.-+.++.++++.+.+++
T Consensus 328 ~~d~~~la~~I~~ll~d---~~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 PMTSDSIISDINRTLAD---PELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCHHHHHHHHHHHHcC---HHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35799999999999999 44333 3333333233567788999999988875
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.12 E-value=0.0016 Score=65.56 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=73.5
Q ss_pred CCceeeeccChHHhhcCCCccceeecc----CchhHHHhHhcCCceeecccccchhhhHHHhhhh----h-eeeEecCCc
Q 012613 333 GRGHIVKWAPQQEVLAHPAVGGFLTHG----GWNSTLESICEGVPMICQPYLGDQMVNARYISHV----W-RLGLHLDGN 403 (460)
Q Consensus 333 ~~~~~~~~vp~~~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----~-G~G~~l~~~ 403 (460)
+|+.+.+...-.+++..+++ +|.-. --.++.||+++|+|+|+-. .......+++. + ..|..++.
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~- 426 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP- 426 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC-
Confidence 56677775556679988888 66443 3458999999999999954 34445555551 0 26766665
Q ss_pred cCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 404 VERREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 404 ~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
-+.+++.++|.++++|++ ...+.+++++ .+.+..+.++.++.+.+.+
T Consensus 427 ~d~~~la~ai~~ll~~~~~~~~~~~~a~~-------~v~~~~s~~~~~~~y~~lY 474 (475)
T cd03813 427 ADPEALARAILRLLKDPELRRAMGEAGRK-------RVERYYTLERMIDSYRRLY 474 (475)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHHh
Confidence 578999999999999832 2233333332 2224455677777777654
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.07 E-value=9.8e-05 Score=72.06 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=91.8
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhh------cCCceeeeccChH
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEML------DGRGHIVKWAPQQ 344 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~vp~~ 344 (460)
+++.++|.+|.+....+++.++...+.|+..+.-.+|......... .++.++. ++|+.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~--------~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE--------ARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH--------HHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH--------HHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 4668999999999999999999999999998888888776543111 1221111 2456777777754
Q ss_pred H---hhcCCCcccee---eccCchhHHHhHhcCCceeecccccchhh-hHHHhhhhheeeEecCCccCHHHHHHHHHHHh
Q 012613 345 E---VLAHPAVGGFL---THGGWNSTLESICEGVPMICQPYLGDQMV-NARYISHVWRLGLHLDGNVERREIEIAVRRVM 417 (460)
Q Consensus 345 ~---ll~~~~~~~~I---~HGG~gs~~eal~~GvP~v~~P~~~DQ~~-na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl 417 (460)
+ .+..+|+ ++ ..+|..|++|||+.|||+|.+|-..=.-. -+..+.. +|+.-.+.. +.++-.+.--++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~--s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD--SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S--SHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC--CHHHHHHHHHHHh
Confidence 4 4455665 54 45788999999999999999995433323 3445555 677744433 5555555555666
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 418 IETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+|. +..++--+++++++.++ ......+.+.++++.+++
T Consensus 429 ~D~--~~l~~lR~~Lr~~~~~S--pLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 429 TDP--ERLRALRAKLRDRRSKS--PLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp H-H--HHHHHHHHHHHHHHHHS--GGG-HHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHH
Confidence 661 12222223333333321 234566666666666654
No 114
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.00 E-value=0.0087 Score=61.05 Aligned_cols=100 Identities=12% Similarity=0.092 Sum_probs=64.7
Q ss_pred ceeeeccChH-HhhcCCCccceeecc---C-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHH
Q 012613 335 GHIVKWAPQQ-EVLAHPAVGGFLTHG---G-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREI 409 (460)
Q Consensus 335 ~~~~~~vp~~-~ll~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 409 (460)
+.+.++.++. ++++.+|+ ||.-+ | -.++.||+++|+|+|+.-..+... +.. .+-|. +. -+.+++
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~-g~nGl-l~--~D~Eaf 671 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS-FPNCL-TY--KTSEDF 671 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee-cCCeE-ec--CCHHHH
Confidence 4556777765 48999998 87643 3 458899999999999998765321 223 12332 22 368999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 410 EIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 410 ~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
.++|.++|+++ .-+..... + ..-+.+.++++++++-
T Consensus 672 AeAI~~LLsd~---~~rl~~~a-----~----~~~SWeAaadrLle~~ 707 (794)
T PLN02501 672 VAKVKEALANE---PQPLTPEQ-----R----YNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHHHHHHhCc---hhhhHHHH-----H----hhCCHHHHHHHHHHhh
Confidence 99999999983 32211111 1 2456777777777653
No 115
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.99 E-value=0.0015 Score=65.83 Aligned_cols=166 Identities=11% Similarity=0.048 Sum_probs=99.2
Q ss_pred eEEEEEccCcccCCHHHHHHHHHHHhhC---CCce-EEEEcCCcccchhhhccCchhHHH-hhcCCceeeeccChHHhhc
Q 012613 274 SVIYVSFGSVVNIDETEFLEIAWGLANS---RVPF-LWVVRPGLVREAEWLELLPTGFVE-MLDGRGHIVKWAPQQEVLA 348 (460)
Q Consensus 274 ~vI~vs~GS~~~~~~~~~~~~~~al~~~---~~~~-i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~vp~~~ll~ 348 (460)
+.++++.|... ..+.+..+++|+... ...+ +..+|.+.. ...+.+-+.+ ...+++.+.++.+..+++.
T Consensus 319 ~~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~-----~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~ 391 (500)
T TIGR02918 319 PFSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE-----KQKLQKIINENQAQDYIHLKGHRNLSEVYK 391 (500)
T ss_pred CeEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECchh-----HHHHHHHHHHcCCCCeEEEcCCCCHHHHHH
Confidence 44566667765 344555566666432 1222 233444320 1112111111 1134567778888888999
Q ss_pred CCCccceeec---cC-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC---ccC----HHHHHHHHHHHh
Q 012613 349 HPAVGGFLTH---GG-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG---NVE----RREIEIAVRRVM 417 (460)
Q Consensus 349 ~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~---~~~----~~~l~~ai~~vl 417 (460)
.+++ +|.- -| ..++.||+++|+|+|+.-..+ .+...+++. .-|..++. .-+ .+.++++|.+++
T Consensus 392 ~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 392 DYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred hCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 9998 7763 34 358999999999999976531 244556552 56766652 112 788999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 418 IETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
+++....+.+++++.++. -+.+..++...+.++++
T Consensus 466 ~~~~~~~~~~~a~~~a~~--------fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 466 NSNDIDAFHEYSYQIAEG--------FLTANIIEKWKKLVREV 500 (500)
T ss_pred ChHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhhC
Confidence 653334555666554444 45788888888877653
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=0.00043 Score=65.08 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=96.0
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHh----hC-CCceEEEEcCCcccchhhhccCchhHHHhhc--CCceee---ec
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLA----NS-RVPFLWVVRPGLVREAEWLELLPTGFVEMLD--GRGHIV---KW 340 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~----~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~---~~ 340 (460)
+++..|.+|+=-..... ..++.+.+++. +. +..++.-+-... .+-+-..+++. .|+.+. +|
T Consensus 202 ~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~--------~v~e~~~~~L~~~~~v~li~pl~~ 272 (383)
T COG0381 202 KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP--------RVRELVLKRLKNVERVKLIDPLGY 272 (383)
T ss_pred ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh--------hhhHHHHHHhCCCCcEEEeCCcch
Confidence 35678998875444433 44555555543 33 333343333221 01111122333 345664 66
Q ss_pred cChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccc
Q 012613 341 APQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIET 420 (460)
Q Consensus 341 vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~ 420 (460)
.+...++.++-+ ++|.+| |-.-||-..|+|++++-..-+||. +++. |.-+.+ ..+.+.+.+++.+++++
T Consensus 273 ~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lv--g~~~~~i~~~~~~ll~~- 341 (383)
T COG0381 273 LDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILV--GTDEENILDAATELLED- 341 (383)
T ss_pred HHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEe--CccHHHHHHHHHHHhhC-
Confidence 778889999887 999888 357899999999999999999987 3322 333333 35779999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 421 EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
+...++.+.... ..|..++.+++++.+.
T Consensus 342 --~~~~~~m~~~~n--------pYgdg~as~rIv~~l~ 369 (383)
T COG0381 342 --EEFYERMSNAKN--------PYGDGNASERIVEILL 369 (383)
T ss_pred --hHHHHHHhcccC--------CCcCcchHHHHHHHHH
Confidence 555554333332 2333445566666554
No 117
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.88 E-value=0.032 Score=54.87 Aligned_cols=177 Identities=13% Similarity=0.222 Sum_probs=97.6
Q ss_pred hhhhccCCCCeEEEEEccCcccC----------CHHHHHHHHHHHhhCCCceEEEEcCCcccc---hhhhccCchhHHHh
Q 012613 264 ISWLDKHAPKSVIYVSFGSVVNI----------DETEFLEIAWGLANSRVPFLWVVRPGLVRE---AEWLELLPTGFVEM 330 (460)
Q Consensus 264 ~~~l~~~~~~~vI~vs~GS~~~~----------~~~~~~~~~~al~~~~~~~i~~~~~~~~~~---~~~~~~l~~~~~~~ 330 (460)
..|+.....++.|.++.-..... ....+..+++.+.+.|+++++...-...+. ++ ...-..+.+.
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD--~~~~~~l~~~ 302 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDD--RMVALNLRQH 302 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCch--HHHHHHHHHh
Confidence 34554433557888876544311 123344455555555888776643211100 01 0011233333
Q ss_pred hc--CCceee--eccChH--HhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEe-cCC-
Q 012613 331 LD--GRGHIV--KWAPQQ--EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLH-LDG- 402 (460)
Q Consensus 331 ~~--~~~~~~--~~vp~~--~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~- 402 (460)
.. ++..+. ++-|.+ .++++|++ +|. .=.=++.-|+..|||.+.++. | +-....++. +|.... ++.
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig-~RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~ 375 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACEL--TVG-TRLHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIR 375 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCE--EEE-ecchHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechh
Confidence 33 222332 232333 68989886 774 233356778999999999997 3 334444466 687755 555
Q ss_pred ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 403 NVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 403 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
+++.+.|.+.+.++++|. +.+++..++--+++++ .+.+.+.++++.+
T Consensus 376 ~l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred hCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 889999999999999985 3444444444444431 1335555555554
No 118
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.82 E-value=0.00045 Score=68.08 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=94.2
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhC-----CCceEEEEcCCcccchhhhccCchhHHH-hhcCCceeeeccChHH-
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANS-----RVPFLWVVRPGLVREAEWLELLPTGFVE-MLDGRGHIVKWAPQQE- 345 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~vp~~~- 345 (460)
++..+++.|.... .+.+..+++++... +.++.|..-++.... ..+-..+.+ ....++.+.+|+++.+
T Consensus 229 ~~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~----~~l~~~~~~~~~~~~V~f~G~v~~~e~ 302 (407)
T cd04946 229 DTLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGPLE----DTLKELAESKPENISVNFTGELSNSEV 302 (407)
T ss_pred CCEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHH----HHHHHHHHhcCCCceEEEecCCChHHH
Confidence 4566677787764 23344455555432 235555433322111 111111111 1124567889999764
Q ss_pred --hhcCCCccceeeccC----chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 346 --VLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 346 --ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
++..+++.++|...- -.+++||+++|+|+|+... ......+.+. +.|..+...-+.+++.++|.++++|
T Consensus 303 ~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 303 YKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 555444444776553 4579999999999998654 3456677763 5888776655889999999999998
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 012613 420 TEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLI 454 (460)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (460)
++ ..++|++..++.+++.-+.+...++++
T Consensus 378 ~~------~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 378 EE------EYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HH------HHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 32 222333333333334445666555543
No 119
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.81 E-value=0.00039 Score=59.43 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhh-----CCCceEEEEcCCcccchhhhccCchhHHH-hhcCCceeeeccCh-
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLAN-----SRVPFLWVVRPGLVREAEWLELLPTGFVE-MLDGRGHIVKWAPQ- 343 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~vp~- 343 (460)
.+++.+++..|+... ...+..+++++.. ...-.++.++.... . ..+-..+.. ...+++.+.+++++
T Consensus 12 ~~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 12 PDKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-K----KELKNLIEKLNLKENIIFLGYVPDD 84 (172)
T ss_dssp -TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-H----HHHHHHHHHTTCGTTEEEEESHSHH
T ss_pred CCCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-c----ccccccccccccccccccccccccc
Confidence 355677777888764 2334444444443 22233444441110 0 001111111 22356688999983
Q ss_pred --HHhhcCCCccceeec----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHh
Q 012613 344 --QEVLAHPAVGGFLTH----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVM 417 (460)
Q Consensus 344 --~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl 417 (460)
..++..+++ +|+. |...++.||+.+|+|+|+.- ...+...+.+ .+.|..++.. +.+++.++|.+++
T Consensus 85 ~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~-~~~g~~~~~~-~~~~l~~~i~~~l 156 (172)
T PF00534_consen 85 ELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIIND-GVNGFLFDPN-DIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGT-TTSEEEESTT-SHHHHHHHHHHHH
T ss_pred cccccccccee--ccccccccccccccccccccccceeecc----ccCCceeecc-ccceEEeCCC-CHHHHHHHHHHHH
Confidence 358889898 8877 56779999999999999744 5667777877 4778888774 9999999999999
Q ss_pred cc
Q 012613 418 IE 419 (460)
Q Consensus 418 ~~ 419 (460)
++
T Consensus 157 ~~ 158 (172)
T PF00534_consen 157 ND 158 (172)
T ss_dssp HH
T ss_pred CC
Confidence 99
No 120
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.78 E-value=0.045 Score=54.96 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCceeeeccChH-HhhcCCCccceeec---cC-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 333 GRGHIVKWAPQQ-EVLAHPAVGGFLTH---GG-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 333 ~~~~~~~~vp~~-~ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
+|+.+.+|.... .+|..+|+ ||.. -| -+++.||+++|+|+|+... ..+...+.+. ..|..++. -+.+
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~~ 526 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQTV 526 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CChh
Confidence 567888886543 48999998 8863 45 4599999999999998765 3456777773 77877765 2344
Q ss_pred HHHHHH---HHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 408 EIEIAV---RRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 408 ~l~~ai---~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.+.+++ .++... .+....+++..++.+.+..+.+..+++..+.+.+
T Consensus 527 aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 527 NLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 444444 222222 1111223333333333566788999988887754
No 121
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.72 E-value=0.0043 Score=60.32 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=68.6
Q ss_pred CCceeeeccChH-HhhcCCCccceeec----cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 333 GRGHIVKWAPQQ-EVLAHPAVGGFLTH----GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 333 ~~~~~~~~vp~~-~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
+++.+.++.++. .++..+++ +|.- |...++.||+++|+|+|+..... .....+++. ..|..++. -+.+
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~--~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~ 333 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQL--SLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIE 333 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhE--EEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHH
Confidence 455677776654 58999888 5543 23458999999999999975432 244556663 67777765 5789
Q ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Q 012613 408 EIEIAVRRVMIETE-GQEMRERILYSKEKAH 437 (460)
Q Consensus 408 ~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~ 437 (460)
++.++|.++++|.+ ...+.+++++.++++.
T Consensus 334 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 334 ALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999843 4556666666555443
No 122
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.70 E-value=0.006 Score=55.41 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=64.3
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchhHHHHHHHh
Q 012613 26 GHINPMLQIASVLYSKGFSITIIHTNLNP-LNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVVPFWDCLVKL 104 (460)
Q Consensus 26 GH~~p~~~La~~L~~rGh~V~~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 104 (460)
-|+.-+..|.++|..+||+|.+.+-++.. ...-..-|+.+..+...- ...+.+.+..+..... .+.++
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g------~~tl~~Kl~~~~eR~~-----~L~ki 79 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHG------GVTLKEKLLESAERVY-----KLSKI 79 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccC------CccHHHHHHHHHHHHH-----HHHHH
Confidence 58888999999999999999998876443 111122467666665311 1122211111111111 12233
Q ss_pred hccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCc
Q 012613 105 TSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 105 ~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~ 144 (460)
.. .. +||+.+. -.++.+..+|.-+|+|.+.+...
T Consensus 80 ~~----~~-kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 80 IA----EF-KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred Hh----hc-CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 22 14 8999999 56788899999999999998654
No 123
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00039 Score=54.55 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=79.7
Q ss_pred EEEEccCcccCCHHHHHH--HHHHHhhCCCceEEEEcCCcccchhhhccCc-hhHHHhhcCCceeeec--cC-hHHhhcC
Q 012613 276 IYVSFGSVVNIDETEFLE--IAWGLANSRVPFLWVVRPGLVREAEWLELLP-TGFVEMLDGRGHIVKW--AP-QQEVLAH 349 (460)
Q Consensus 276 I~vs~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~--vp-~~~ll~~ 349 (460)
||||.||....-.+.+.. ..+-.+....+.|+..+.+. ..| .+. .+.+| -+ .+.+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--------~kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--------IKPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--------ccccccc--------EEEeechHHHHHHHhhc
Confidence 789999984321222211 22222233457888887643 122 222 44433 34 3457777
Q ss_pred CCccceeeccCchhHHHhHhcCCceeecccc--------cchhhhHHHhhhhheeeEecCC-cc-CHHHHHHHHHHHhcc
Q 012613 350 PAVGGFLTHGGWNSTLESICEGVPMICQPYL--------GDQMVNARYISHVWRLGLHLDG-NV-ERREIEIAVRRVMIE 419 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~--------~DQ~~na~~v~~~~G~G~~l~~-~~-~~~~l~~ai~~vl~~ 419 (460)
+++ +|+|+|.||++.++..++|.|++|-. ..|...|..+.+ .+.=..... +. -.+.++..+.+++..
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s~~~v~~~ 142 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVSVADVLHP 142 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhhhhhhcCC
Confidence 777 99999999999999999999999953 357888888888 577666665 22 344555566666643
No 124
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.46 E-value=0.011 Score=52.47 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=36.8
Q ss_pred CCceeeeccCh-H---HhhcCCCccceeeccC----chhHHHhHhcCCceeecccccch
Q 012613 333 GRGHIVKWAPQ-Q---EVLAHPAVGGFLTHGG----WNSTLESICEGVPMICQPYLGDQ 383 (460)
Q Consensus 333 ~~~~~~~~vp~-~---~ll~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ 383 (460)
.|+.+.++++. . .++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 46688888632 2 25545887 888876 78999999999999998875543
No 125
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.35 E-value=0.0013 Score=63.02 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=80.4
Q ss_pred CCceeeeccChHHh---hcCCCccceeec-------cCc------hhHHHhHhcCCceeecccccchhhhHHHhhhhhee
Q 012613 333 GRGHIVKWAPQQEV---LAHPAVGGFLTH-------GGW------NSTLESICEGVPMICQPYLGDQMVNARYISHVWRL 396 (460)
Q Consensus 333 ~~~~~~~~vp~~~l---l~~~~~~~~I~H-------GG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 396 (460)
.|+.+.+|+|+.++ |.. +.+++... |.+ +-+.+.+++|+|+|+. ++...+..|++. ++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 56689999998775 443 33222221 111 2277789999999985 457788999995 99
Q ss_pred eEecCCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012613 397 GLHLDGNVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDH 456 (460)
Q Consensus 397 G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (460)
|+.++ +.+++.+++.++.. ++-..|++|+++++++++ .|.--.+++++++..
T Consensus 281 G~~v~---~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 281 GFVVD---SLEELPEIIDNITE-EEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred eEEeC---CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 99987 56789999988643 334679999999999999 788778887777653
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.011 Score=58.11 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=89.3
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhc------CCceeeeccC--
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLD------GRGHIVKWAP-- 342 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~vp-- 342 (460)
+++.+||++|+......++.++.-++-++..+--++|..+++..++ ...++++... +|.++.+-.|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 4668999999999989999999999999998888899887753111 2223322222 3556666555
Q ss_pred -hHHhhcCCCccceee---ccCchhHHHhHhcCCceeecccccchhh--hHHHhhhhheeeEecCCccCHHHHHHHH
Q 012613 343 -QQEVLAHPAVGGFLT---HGGWNSTLESICEGVPMICQPYLGDQMV--NARYISHVWRLGLHLDGNVERREIEIAV 413 (460)
Q Consensus 343 -~~~ll~~~~~~~~I~---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~l~~ai 413 (460)
|.+=+.-+|+ |+. =||..|+.|+|..|||+|..+ ++|+- |+.-+....|+-..+.. -..+=++.+|
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-s~~dYV~~av 572 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-SRADYVEKAV 572 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-CHHHHHHHHH
Confidence 4456666776 765 599999999999999999887 77764 55555553344333322 2334455554
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.21 E-value=0.0014 Score=53.39 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=49.7
Q ss_pred cCCceeeeccCh-HHhhcCCCccceeec--cC-chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 332 DGRGHIVKWAPQ-QEVLAHPAVGGFLTH--GG-WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 332 ~~~~~~~~~vp~-~~ll~~~~~~~~I~H--GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
..|+.+.+|++. .+++..+++....+. .| .+++.|++.+|+|+|+.+. .....++.. +.|..+ . -+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~-~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-A-NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-C-CCHH
Confidence 357789999874 358999998444332 23 4899999999999999776 133344443 778777 3 4899
Q ss_pred HHHHHHHHHhcc
Q 012613 408 EIEIAVRRVMIE 419 (460)
Q Consensus 408 ~l~~ai~~vl~~ 419 (460)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.18 E-value=0.033 Score=52.92 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=74.8
Q ss_pred CCeEEEEEccC-ccc--CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeec--cCh-HH
Q 012613 272 PKSVIYVSFGS-VVN--IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKW--APQ-QE 345 (460)
Q Consensus 272 ~~~vI~vs~GS-~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--vp~-~~ 345 (460)
+++.|.+..|+ ... ++.+.+..+++.+.+.+.++++..++.. + ...-..+.+..+. ..+.+- +++ .+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~----e--~~~~~~i~~~~~~-~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA----E--KQRAERIAEALPG-AVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH----H--HHHHHHHHhhCCC-CeecCCCCHHHHHH
Confidence 34555555554 332 7778888888888766777766644322 0 0111223222221 123332 334 45
Q ss_pred hhcCCCccceeeccCchhHHHhHhcCCceeec--ccccchhhhHHHhhhhheeeEecC-C-ccCHHHHHHHHHHHh
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESICEGVPMICQ--PYLGDQMVNARYISHVWRLGLHLD-G-NVERREIEIAVRRVM 417 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~--P~~~DQ~~na~~v~~~~G~G~~l~-~-~~~~~~l~~ai~~vl 417 (460)
++++|++ +|+. -.|.++=|.+.|+|+|++ |....+ ++-.-.. ..-+.-. . .++++++.+++.++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~--~~P~~~~--~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATDPGR--TGGYGKP--NVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCCHhh--cccCCCC--ceEEccCccCCCCHHHHHHHHHhhC
Confidence 9999997 7764 567899999999999987 222222 1110000 0011111 3 799999999998875
No 129
>PRK14098 glycogen synthase; Provisional
Probab=97.13 E-value=0.0096 Score=60.04 Aligned_cols=167 Identities=10% Similarity=-0.034 Sum_probs=95.4
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhh---CCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChH---Hh
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLAN---SRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQ---EV 346 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~---~l 346 (460)
+.+++...|.... .+.+..+++|+.. .+.+++++ +.+.... ...+ ....++.++|+.+..+++.. .+
T Consensus 306 ~~~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lviv-G~G~~~~---~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 306 ETPLVGVIINFDD--FQGAELLAESLEKLVELDIQLVIC-GSGDKEY---EKRF-QDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCCEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEE-eCCCHHH---HHHH-HHHHHHCCCCEEEEEecCHHHHHHH
Confidence 3456666676653 2233344444433 34555444 3321000 0011 12222335677888888864 58
Q ss_pred hcCCCccceeecc---Cc-hhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhc---c
Q 012613 347 LAHPAVGGFLTHG---GW-NSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMI---E 419 (460)
Q Consensus 347 l~~~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~---~ 419 (460)
++.+|+ ||.-+ |. .+.+||+++|+|.|+....+-........++. +.|...+. -+++.+.++|.++++ |
T Consensus 379 ~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~-~d~~~la~ai~~~l~~~~~ 454 (489)
T PRK14098 379 IAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHD-YTPEALVAKLGEALALYHD 454 (489)
T ss_pred HHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCC-CCHHHHHHHHHHHHHHHcC
Confidence 889998 88654 22 36789999999988877643211111112233 67776665 578999999998763 4
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 420 TEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+ +..+++. +.++.+.-+.++.++++++.+++
T Consensus 455 ---~---~~~~~~~---~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 455 ---E---ERWEELV---LEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred ---H---HHHHHHH---HHHhcCCCChHHHHHHHHHHHHH
Confidence 2 1122222 22334778899999999988865
No 130
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.84 E-value=0.0015 Score=49.44 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=49.2
Q ss_pred cchhhhccCCCCeEEEEEccCcccC---CH--HHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhH
Q 012613 262 SCISWLDKHAPKSVIYVSFGSVVNI---DE--TEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGF 327 (460)
Q Consensus 262 ~l~~~l~~~~~~~vI~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 327 (460)
.+..|+...+.++.|++|+||.... .. ..+..+++++..++..++.++....... +..+|+|+
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 3678998888999999999998862 22 4788899999999999999998765433 45567664
No 131
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.82 E-value=0.18 Score=48.60 Aligned_cols=103 Identities=8% Similarity=0.016 Sum_probs=70.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeEEEE-cCCCCCCCccCcccHHHHHHHHHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACNYPHFEFHS-ISASLSETEASTEDMVAILIALNA 91 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.........+.+..+- ++.. .. ... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--~~------~~~-~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--HG------ALE-I----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--cc------hhh-h-----
Confidence 689999999999999999999999996 99999999876555444445554332 2211 00 000 0
Q ss_pred hcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEE
Q 012613 92 KCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTII 140 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~ 140 (460)
.....+++.+++ . ++|++|.=....-...++...|+|.-.
T Consensus 67 ---~~~~~l~~~lr~-----~-~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLRE-----K-RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHh-----c-CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112244556665 4 899999765555566778888888665
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.81 E-value=0.02 Score=46.78 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=64.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcch
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVV 95 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
||++++.....| ...+++.|.++||+|++++............+++++.++... ......+. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~-------k~~~~~~~-~------ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR-------KSPLNYIK-Y------ 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC-------CccHHHHH-H------
Confidence 567777666566 457799999999999999996443333334688888885331 11222221 1
Q ss_pred hHHHHHHHhhccCCCCCCCeeEEEECCcch---hHHHHHHHcC-CCeEEEeC
Q 012613 96 PFWDCLVKLTSISNVQEDSFACIITDPLWY---FVHAVANDFK-LPTIILQT 143 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~---~~~~vA~~lg-IP~v~~~~ 143 (460)
..+.+-+++ . +||+|.+..... .+..++...+ +|.+....
T Consensus 64 --~~l~k~ik~-----~-~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 64 --FRLRKIIKK-----E-KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --HHHHHHhcc-----C-CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 123333433 4 899998876553 2334667788 89887543
No 133
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.53 E-value=0.29 Score=46.83 Aligned_cols=102 Identities=9% Similarity=0.043 Sum_probs=67.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeEE-EEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACNYPHFEF-HSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||+++-..+.|++.-..++.++|++. +.+|++++.+.........+.+.- +.++.. .. ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--~~------~~~~------- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--HG------ALEL------- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--cc------chhh-------
Confidence 68999999999999999999999987 999999998755444443344432 222211 00 0000
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEE
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTII 140 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~ 140 (460)
.....+++.+++ . ++|++|.-........++...++|.-.
T Consensus 66 --~~~~~~~~~lr~-----~-~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 --TERRRLGRSLRE-----E-RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred --hHHHHHHHHHhh-----c-CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 011234455655 4 899999876665566678888888654
No 134
>PHA01633 putative glycosyl transferase group 1
Probab=96.49 E-value=0.026 Score=53.53 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=62.2
Q ss_pred CCceee---eccChH---HhhcCCCccceeecc---Cc-hhHHHhHhcCCceeeccc------ccch------hhhHHHh
Q 012613 333 GRGHIV---KWAPQQ---EVLAHPAVGGFLTHG---GW-NSTLESICEGVPMICQPY------LGDQ------MVNARYI 390 (460)
Q Consensus 333 ~~~~~~---~~vp~~---~ll~~~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~~v 390 (460)
+++.+. +++++. +++..+|+ ||.-+ |+ .++.||+++|+|+|+--. .+|+ .++....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 455776 455544 57888888 88643 43 478899999999998733 2332 3333333
Q ss_pred h--hhheeeEecCCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 012613 391 S--HVWRLGLHLDGNVERREIEIAVRRVMIETEGQEMRERILYSKEKAH 437 (460)
Q Consensus 391 ~--~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~ 437 (460)
. .+ |.|..++. .+++++.++|.+++...+.+....++++.++++.
T Consensus 279 ~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~ 325 (335)
T PHA01633 279 YDKEH-GQKWKIHK-FQIEDMANAIILAFELQDREERSMKLKELAKKYD 325 (335)
T ss_pred cCccc-CceeeecC-CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcC
Confidence 3 32 66665554 7999999999999544211222344455554443
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.39 E-value=0.48 Score=45.05 Aligned_cols=134 Identities=12% Similarity=0.000 Sum_probs=75.0
Q ss_pred CeEE-EEEccCccc--CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeec--cCh-HHh
Q 012613 273 KSVI-YVSFGSVVN--IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKW--APQ-QEV 346 (460)
Q Consensus 273 ~~vI-~vs~GS~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--vp~-~~l 346 (460)
++.| ++-.||... ++.+.+.++++.+.+.+.++++..++.. + ...-+.+.+.. .++.+.+. +.+ .++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~--e----~~~~~~i~~~~-~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH--E----EQRAKRLAEGF-PYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH--H----HHHHHHHHccC-CcceecCCCCHHHHHHH
Confidence 3444 444444432 7788888999888776777665544321 1 11112222211 12233332 334 359
Q ss_pred hcCCCccceeeccCchhHHHhHhcCCceeec--ccccchhhhHHHhhhhheeeEecC-C-ccCHHHHHHHHHHHhc
Q 012613 347 LAHPAVGGFLTHGGWNSTLESICEGVPMICQ--PYLGDQMVNARYISHVWRLGLHLD-G-NVERREIEIAVRRVMI 418 (460)
Q Consensus 347 l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~--P~~~DQ~~na~~v~~~~G~G~~l~-~-~~~~~~l~~ai~~vl~ 418 (460)
+.+|++ +|+.- .|.++=|.+.|+|+|++ |..... ++-.-....-+...-. . +++++.+.++++++|+
T Consensus 251 i~~a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~--~~p~~~~~~~~~~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGL--IGGYGKNQHACRSPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEecC-CcHHHHHHHhCCCEEEEECCCCccc--ccCCCCCceeecCCCcccccCCHHHHHHHHHHHhh
Confidence 999997 88654 57999999999999998 432211 1111000000100011 2 7999999999988874
No 136
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.37 E-value=0.025 Score=56.04 Aligned_cols=122 Identities=22% Similarity=0.276 Sum_probs=79.2
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHh------hcCCceeeeccChH
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEM------LDGRGHIVKWAPQQ 344 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~vp~~ 344 (460)
+++.+||++|--....++..++..++.|+..+.-++|..+.+..-+ .+|... .++++.+.+-+...
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 4668999999888889999999999999999999999988654221 111111 11333554444422
Q ss_pred H-----hhcCCCccceeeccCchhHHHhHhcCCceeecccccchhh-hHHHhhhhheeeEecCC
Q 012613 345 E-----VLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMV-NARYISHVWRLGLHLDG 402 (460)
Q Consensus 345 ~-----ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~-na~~v~~~~G~G~~l~~ 402 (460)
+ .|..=.+.-+.|+ |..|.++.|++|||+|.+|...---. -+..+.. +|+|-.+.+
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak 889 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK 889 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh
Confidence 2 2222222336665 57899999999999999997432222 2344455 688875555
No 137
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.28 E-value=0.24 Score=47.58 Aligned_cols=105 Identities=11% Similarity=0.136 Sum_probs=69.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeE-EEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACNYPHFE-FHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||+++-..+.|++.-+.++.++|+++ +.+|++++.+.+.......+.+. ++.++.... ...... +.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~-----~~~~~~----~~-- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA-----KAGERK----LA-- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh-----cchHHH----HH--
Confidence 58899999999999999999999997 89999999876554444445553 333432110 000000 00
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEE
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTII 140 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~ 140 (460)
.+..++..+++ . ++|++|.-........++...|+|.-+
T Consensus 70 ---~~~~l~~~lr~-----~-~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 ---NQFHLIKVLRA-----N-RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HHHHHHHHHHh-----C-CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11234455655 4 899999665556667788899999765
No 138
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.28 E-value=0.51 Score=45.46 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeEE-EEcCCCCCCCccCcccHHHHHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACNYPHFEF-HSISASLSETEASTEDMVAILIAL 89 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
+.+||+++-....|++.-+.++.+.|+++ +.+|++++.+.........+.+.. +.++.. . ......+.
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~--~-----~~~~~~~~-- 74 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK--K-----AGASEKIK-- 74 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc--c-----ccHHHHHH--
Confidence 46899999999999999999999999998 899999998766554444355533 333321 0 00000010
Q ss_pred HHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEE
Q 012613 90 NAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTII 140 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~ 140 (460)
.+..++..+++ . ++|++|.-........++...|.|..+
T Consensus 75 ------~~~~l~~~lr~-----~-~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 75 ------NFFSLIKVLRA-----N-KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ------HHHHHHHHHhh-----C-CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 12234556655 4 899999665555556677788888765
No 139
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.27 E-value=0.48 Score=45.27 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=70.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|+|+++-..+.|++.-..++-+.|+++ +.++++++++.........+.+.-+..-... . .. .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~--~----~~----------~ 65 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKK--K----KG----------L 65 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhcccccc--c----cc----------c
Confidence 899999999999999999999999998 5999999997555444332333222211110 0 00 1
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEE
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIIL 141 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~ 141 (460)
.......+.+.+++ . ++|+||.=...+-...++..+++|.-.-
T Consensus 66 ~~~~~~~l~~~lr~-----~-~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 66 GLKERLALLRTLRK-----E-RYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred chHHHHHHHHHhhc-----c-CCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 11122234555555 4 7999998877777788888899987774
No 140
>PHA01630 putative group 1 glycosyl transferase
Probab=96.23 E-value=0.21 Score=47.68 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=67.7
Q ss_pred eccChHH---hhcCCCccceee---ccC-chhHHHhHhcCCceeeccccc--chh---hhHHHhhhh----------hee
Q 012613 339 KWAPQQE---VLAHPAVGGFLT---HGG-WNSTLESICEGVPMICQPYLG--DQM---VNARYISHV----------WRL 396 (460)
Q Consensus 339 ~~vp~~~---ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~~v~~~----------~G~ 396 (460)
.++|+.+ ++..+|+ +|. ..| -.++.||+++|+|+|+.-..+ |.- .|...++.. .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466554 7888888 763 333 448999999999999987543 321 122111110 024
Q ss_pred eEecCCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 397 GLHLDGNVERREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 397 G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
|..+.. +.+++.+++.++|.|..-+.++++.+.-+.... +..+..+.++++.+.++++
T Consensus 274 G~~v~~--~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~~ 331 (331)
T PHA01630 274 GYFLDP--DIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEKY 331 (331)
T ss_pred ccccCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhcC
Confidence 443333 677888888888876210123333333233333 4566889999999988763
No 141
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.17 E-value=0.47 Score=44.03 Aligned_cols=102 Identities=11% Similarity=0.023 Sum_probs=65.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCeEE-EEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTNLNPLNACNYPHFEF-HSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||+++-..+.|++.-+.++.++|+++ +-+|++++.+.........+.++- +.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 68899999999999999999999997 489999999755544443344432 2222110 00011
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEE
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTII 140 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~ 140 (460)
..+.+++..+++ . ++|+++.-........++...+++...
T Consensus 66 --~~~~~~~~~l~~-----~-~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --GARRRLARALRR-----R-RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --HHHHHHHHHHhh-----c-CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 112344555655 4 799999766655555566677776654
No 142
>PLN02939 transferase, transferring glycosyl groups
Probab=96.16 E-value=0.072 Score=56.70 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=72.0
Q ss_pred CCceeeeccChH---HhhcCCCccceeecc---C-chhHHHhHhcCCceeeccccc--chhhh--HHHh-hhhheeeEec
Q 012613 333 GRGHIVKWAPQQ---EVLAHPAVGGFLTHG---G-WNSTLESICEGVPMICQPYLG--DQMVN--ARYI-SHVWRLGLHL 400 (460)
Q Consensus 333 ~~~~~~~~vp~~---~ll~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v-~~~~G~G~~l 400 (460)
+++.+..+++.. .+++.+|+ ||.-+ | -.+.+||+++|+|.|+....+ |--.+ ...+ +. -+-|...
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEEe
Confidence 456777888764 48999998 88643 2 238899999999999876654 22111 1111 12 1456555
Q ss_pred CCccCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 401 DGNVERREIEIAVRRVMI----ETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 401 ~~~~~~~~l~~ai~~vl~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.. .+++.+.++|.+++. | +..++ ++++ .++...-+....++++++.+++
T Consensus 914 ~~-~D~eaLa~AL~rAL~~~~~d---pe~~~---~L~~---~am~~dFSWe~~A~qYeeLY~~ 966 (977)
T PLN02939 914 LT-PDEQGLNSALERAFNYYKRK---PEVWK---QLVQ---KDMNIDFSWDSSASQYEELYQR 966 (977)
T ss_pred cC-CCHHHHHHHHHHHHHHhccC---HHHHH---HHHH---HHHHhcCCHHHHHHHHHHHHHH
Confidence 55 578889999988875 4 22222 1221 1222567888888888887754
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.11 E-value=0.27 Score=46.20 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=43.4
Q ss_pred ChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhh----hHHHhhhhheeeEecCC
Q 012613 342 PQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMV----NARYISHVWRLGLHLDG 402 (460)
Q Consensus 342 p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~G~~l~~ 402 (460)
|+...|..+|. .+||---.+.+.||+..|+|+.++++-. +.. -.+.+++ .|+-..+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCC
Confidence 67789998886 6777777899999999999999999876 322 3345555 376666554
No 144
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.84 E-value=0.02 Score=47.62 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchhHHHHHHHhhcc
Q 012613 29 NPMLQIASVLYSKGFSITIIHTNLNPLNA-CNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVVPFWDCLVKLTSI 107 (460)
Q Consensus 29 ~p~~~La~~L~~rGh~V~~~~~~~~~~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 107 (460)
.-+..|+++|.++||+|+++++....... ....++.+..++-..... .......+ ..+...+ ....
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~l-~~~~- 71 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPW---PLRLLRFL--------RRLRRLL-AARR- 71 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSS---GGGHCCHH--------HHHHHHC-HHCT-
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccch---hhhhHHHH--------HHHHHHH-hhhc-
Confidence 34678999999999999999976443322 222578888777222111 00011111 1122222 1122
Q ss_pred CCCCCCCeeEEEECCcc-hhHHHHHH-HcCCCeEEEeC
Q 012613 108 SNVQEDSFACIITDPLW-YFVHAVAN-DFKLPTIILQT 143 (460)
Q Consensus 108 ~~~~~~~pDlvi~D~~~-~~~~~vA~-~lgIP~v~~~~ 143 (460)
. +||+|.+.... .....++. ..++|++....
T Consensus 72 ----~-~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 72 ----E-RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp --------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ----c-CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 3 89999988643 22233444 78999998643
No 145
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.60 E-value=0.1 Score=39.11 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=55.3
Q ss_pred ccCchhHHHhHhcCCceeecccccchhhhHHHhhhhhe-eeEecCCccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 012613 358 HGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWR-LGLHLDGNVERREIEIAVRRVMIETEGQEMRERILYSKEKA 436 (460)
Q Consensus 358 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~ 436 (460)
+|-..-+.|++++|+|+|.-.. ......+.. | -++..+ +.+++.++|..+++|+ ...++.+++-.+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~---~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN---DPEELAEKIEYLLENP--EERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC---CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 5556689999999999999865 334444333 4 333333 8999999999999993 23334444444444
Q ss_pred HHhhcCCCChHHHHHHHHH
Q 012613 437 HLCLKPGGSSYQSLERLID 455 (460)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~ 455 (460)
+ +.-+..+.++++++
T Consensus 78 ~----~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 78 L----KRHTWEHRAEQILE 92 (92)
T ss_pred H----HhCCHHHHHHHHHC
Confidence 4 66677777777653
No 146
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.55 E-value=0.14 Score=43.33 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=55.7
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCc---cCcccHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCee
Q 012613 40 SKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETE---ASTEDMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFA 116 (460)
Q Consensus 40 ~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pD 116 (460)
++||+|++++........ +|++.+.+...-.... ....++...+.. . ....+.+..|++ .+. .||
T Consensus 1 q~gh~v~fl~~~~~~~~~---~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~r----g-~av~~a~~~L~~---~Gf-~PD 68 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP---PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLR----G-QAVARAARQLRA---QGF-VPD 68 (171)
T ss_pred CCCCEEEEEecCCCCCCC---CCcEEEEeCCCCCCCCCCCcccccHHHHHHH----H-HHHHHHHHHHHH---cCC-CCC
Confidence 479999999964333222 5888888864221111 111222221111 1 123345566666 366 899
Q ss_pred EEEECCcchhHHHHHHHc-CCCeEEEe
Q 012613 117 CIITDPLWYFVHAVANDF-KLPTIILQ 142 (460)
Q Consensus 117 lvi~D~~~~~~~~vA~~l-gIP~v~~~ 142 (460)
+||..+..-.++.+-..+ ++|.+.+.
T Consensus 69 vI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 69 VIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred EEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 999998877778888999 99999864
No 147
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.22 E-value=0.22 Score=43.29 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=62.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeEEEEcCCC-C---CCCccCcccHHHHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACN----YPHFEFHSISAS-L---SETEASTEDMVAIL 86 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~----~~gi~~~~~~~~-~---~~~~~~~~~~~~~~ 86 (460)
||||+.-=.+. +---+..|+++|.+.||+|+++.|..+...... ..-++......+ . ...+.....+..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 67777776665 566788999999878899999999855533211 122333222111 1 11223334444333
Q ss_pred HHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECC----------cc---hhHHHHHHHcCCCeEEEeCc
Q 012613 87 IALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDP----------LW---YFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~----------~~---~~~~~vA~~lgIP~v~~~~~ 144 (460)
..... .+.. .. +||+||+-. ++ ..+..-|..+|||.|.++..
T Consensus 80 ~~al~-----------~~~~----~~-~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 KLALD-----------GLLP----DK-KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HHHHH-----------CTST----TS-S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHH-----------hhhc----cC-CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 22222 2221 12 599999642 22 34455677889999999765
No 148
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=94.84 E-value=0.82 Score=41.42 Aligned_cols=115 Identities=7% Similarity=-0.021 Sum_probs=64.3
Q ss_pred CCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeEEEEcCCC-CCCCccCcccHHHH
Q 012613 11 PRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACN----YPHFEFHSISAS-LSETEASTEDMVAI 85 (460)
Q Consensus 11 ~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~----~~gi~~~~~~~~-~~~~~~~~~~~~~~ 85 (460)
+.++||||+.-=.+. |---+..|+++|.+.| +|+++.|......... ..-+++..+... -...+.....+..-
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDC 79 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDC 79 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHH
Confidence 456799887765554 4456888999998888 7999988744432211 122444433310 00112222333332
Q ss_pred HHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECC-------------cchhHHHHHHHcCCCeEEEeCc
Q 012613 86 LIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDP-------------LWYFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~-------------~~~~~~~vA~~lgIP~v~~~~~ 144 (460)
.... +..+.. . +||+||+-. .+..+..-|..+|||.|.++..
T Consensus 80 V~la-----------l~~~~~-----~-~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 80 IKVA-----------LSHILP-----E-KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred HHHH-----------HHhhcC-----C-CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 2211 122222 3 788888632 2244556678889999999853
No 149
>PRK14099 glycogen synthase; Provisional
Probab=94.40 E-value=1.1 Score=45.18 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=63.0
Q ss_pred eeeccChH-Hhh-cCCCccceee---ccCch-hHHHhHhcCCceeeccccc--chhhhHHH---hhhhheeeEecCCccC
Q 012613 337 IVKWAPQQ-EVL-AHPAVGGFLT---HGGWN-STLESICEGVPMICQPYLG--DQMVNARY---ISHVWRLGLHLDGNVE 405 (460)
Q Consensus 337 ~~~~vp~~-~ll-~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~---v~~~~G~G~~l~~~~~ 405 (460)
+.+|-... .++ ..+|+ ||. +=|.| +.+||+++|+|.|+....+ |--....- .+.. +.|..++. -+
T Consensus 355 ~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-~d 430 (485)
T PRK14099 355 VIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-VT 430 (485)
T ss_pred EeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC-CC
Confidence 44653322 233 45777 875 34444 6689999997777654432 22111100 0111 46776665 57
Q ss_pred HHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 406 RREIEIAVRR---VMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 406 ~~~l~~ai~~---vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
++.+.++|.+ +++| +..+ +++++... .+.-+.++.++++++.+++
T Consensus 431 ~~~La~ai~~a~~l~~d---~~~~---~~l~~~~~---~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 431 ADALAAALRKTAALFAD---PVAW---RRLQRNGM---TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred HHHHHHHHHHHHHHhcC---HHHH---HHHHHHhh---hhcCChHHHHHHHHHHHHH
Confidence 8999999987 5666 3222 22222221 2567888888998887764
No 150
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.65 E-value=0.49 Score=40.15 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=58.0
Q ss_pred EEEcCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCCCCCCCC-----C--CCCeEEEEcCCCCCCCccCcccHHHHHHH
Q 012613 18 ILFPLPYQGHINPMLQIASVL-YSK-GFSITIIHTNLNPLNAC-----N--YPHFEFHSISASLSETEASTEDMVAILIA 88 (460)
Q Consensus 18 l~~~~~~~GH~~p~~~La~~L-~~r-Gh~V~~~~~~~~~~~~~-----~--~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
+++.. +.||+.=|+.|.+.+ .++ .++..+++..+...... + ....++..+|....-...........+..
T Consensus 2 l~v~g-sGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~ 80 (170)
T PF08660_consen 2 LVVLG-SGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRA 80 (170)
T ss_pred EEEEc-CcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHH
Confidence 44444 449999999999999 333 56655565543332210 0 00112333442211111111122222222
Q ss_pred HHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhH--HHHHHHc------CCCeEEEeC
Q 012613 89 LNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFV--HAVANDF------KLPTIILQT 143 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~--~~vA~~l------gIP~v~~~~ 143 (460)
+ + ..+.-+.+ . +||+||+..-..|. ..+|..+ |.+.|.+-+
T Consensus 81 ~-------~-~~~~il~r-----~-rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 81 F-------L-QSLRILRR-----E-RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred H-------H-HHHHHHHH-----h-CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 2 1 12222333 3 89999998777444 4578888 999999754
No 151
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.28 E-value=0.26 Score=44.80 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=56.4
Q ss_pred eeccChHHhhcCCCccceeeccCchhH-HHhHhcCCceeecccccchhh--hHHHhhhhheeeEecCCccCHHHHHHHHH
Q 012613 338 VKWAPQQEVLAHPAVGGFLTHGGWNST-LESICEGVPMICQPYLGDQMV--NARYISHVWRLGLHLDGNVERREIEIAVR 414 (460)
Q Consensus 338 ~~~vp~~~ll~~~~~~~~I~HGG~gs~-~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~l~~ai~ 414 (460)
..|-.+.++|.++++ .|--. ||. -+++--|+|+|.+|-.+-|+. -|.+=.+-+|+.+.+-. -++..-..+.+
T Consensus 300 lsqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q 374 (412)
T COG4370 300 LSQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQ 374 (412)
T ss_pred EeHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHH
Confidence 466666777777776 55333 344 456788999999999999954 67777775688877755 33444445555
Q ss_pred HHhccccHHHHHHHHH
Q 012613 415 RVMIETEGQEMRERIL 430 (460)
Q Consensus 415 ~vl~~~~~~~~~~~a~ 430 (460)
++|.| +.+.++++
T Consensus 375 ~ll~d---p~r~~air 387 (412)
T COG4370 375 ELLGD---PQRLTAIR 387 (412)
T ss_pred HHhcC---hHHHHHHH
Confidence 69999 55444443
No 152
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.06 E-value=0.9 Score=45.38 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=71.1
Q ss_pred eccChHH---hhcCCCccceeec---cCch-hHHHhHhcCCc----eeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 339 KWAPQQE---VLAHPAVGGFLTH---GGWN-STLESICEGVP----MICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 339 ~~vp~~~---ll~~~~~~~~I~H---GG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
..+++.+ ++..+|+ +|.- =|+| +..||+++|+| +|+--+.+-- ..+ +-|..+.. .+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l----~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL----NGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh----CCcEEECC-CCHH
Confidence 4566654 6888888 7753 3655 78899999999 6665544322 222 23455555 6789
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 408 EIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 408 ~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.++++|.++|+... +.-+++.+++++.+. ..+...-++.+++.+.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 99999999998532 355666666777665 36788888888887754
No 153
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.88 E-value=0.85 Score=38.34 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=24.4
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 24 YQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 24 ~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
..|=-.-+..|+++|+++||+|+++++....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3467778899999999999999999886433
No 154
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=91.37 E-value=4.2 Score=40.77 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=62.7
Q ss_pred eeccChHH---hhcCCCccceee---ccCch-hHHHhHhcCCc----eeecccccchhhhHHHhhhhheeeEecCCccCH
Q 012613 338 VKWAPQQE---VLAHPAVGGFLT---HGGWN-STLESICEGVP----MICQPYLGDQMVNARYISHVWRLGLHLDGNVER 406 (460)
Q Consensus 338 ~~~vp~~~---ll~~~~~~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (460)
.+++++.+ ++..+|+ +|. +-|+| ++.||+++|+| +|+--..+- +.. - .-|..++. .+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~~~-~---~~g~lv~p-~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----AEE-L---SGALLVNP-YDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----hhh-c---CCCEEECC-CCH
Confidence 36777655 6888888 774 34554 67899999999 444322221 110 1 22444554 578
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 407 REIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 407 ~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
++++++|.+++++.. ...+++.++.++.+. ..+...-++.+++.+
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 999999999998632 222333333333333 356777777777655
No 155
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=91.19 E-value=5.5 Score=35.95 Aligned_cols=110 Identities=12% Similarity=0.028 Sum_probs=59.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCeEEEEcCC--CCCCCccCcccHHHHHHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC----NYPHFEFHSISA--SLSETEASTEDMVAILIA 88 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~----~~~gi~~~~~~~--~~~~~~~~~~~~~~~~~~ 88 (460)
||||+.-=.+. |---+..|+++|.+.| +|+++.|........ -...+++..++. +. +.+.....+..-...
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv~~ 77 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCVIL 77 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHHHH
Confidence 46665443332 4455788999999888 899999875543221 112344444431 11 112222333322222
Q ss_pred HHHhcchhHHHHHHHhhccCCCCCCCeeEEEECC-------------cchhHHHHHHHcCCCeEEEeCc
Q 012613 89 LNAKCVVPFWDCLVKLTSISNVQEDSFACIITDP-------------LWYFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~-------------~~~~~~~vA~~lgIP~v~~~~~ 144 (460)
.. ..+.. . +||+||+-. .+..+..-|..+|||.+.++..
T Consensus 78 gl-----------~~l~~-----~-~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 78 GI-----------NELMP-----E-VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred HH-----------HHhcc-----C-CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 11 12222 2 688887532 2244556678889999998753
No 156
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=90.53 E-value=7.4 Score=35.28 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=25.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
||||+.-=.+. |---+..|+++|.+ +|+|+++.|....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCC
Confidence 56666554443 33347889999965 6899999987444
No 157
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=90.47 E-value=7.1 Score=35.38 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=58.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCeEEEEcCCCCCCCccCcccHHHHHHHHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACN----YPHFEFHSISASLSETEASTEDMVAILIALN 90 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~----~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
||||+.-=.+. |---+..|+++|.+. |+|+++.|......... ..-+++..+... .+.....+..-....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~---~~~v~GTPaDcV~~g- 74 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG---FYAVDGTPTDCVHLA- 74 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC---eEEECCcHHHHHHHH-
Confidence 46665554443 445578899999988 79999999744432211 122333333211 122222332222221
Q ss_pred HhcchhHHHHHHHhhccCCCCCCCeeEEEECC-------------cchhHHHHHHHcCCCeEEEeCc
Q 012613 91 AKCVVPFWDCLVKLTSISNVQEDSFACIITDP-------------LWYFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~-------------~~~~~~~vA~~lgIP~v~~~~~ 144 (460)
+..+.. . +||+||+-. .+..+..-|..+|||.+.++..
T Consensus 75 ----------l~~l~~-----~-~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 75 ----------LNGLLD-----P-KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred ----------HHhhcc-----C-CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 122222 2 688888632 2244556678889999999863
No 158
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=90.05 E-value=8.3 Score=35.17 Aligned_cols=38 Identities=5% Similarity=0.081 Sum_probs=27.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
||||+.-=.+. |---+..|+++|...| +|+++.|....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 46666554444 5566889999998887 89999887444
No 159
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.49 E-value=18 Score=33.64 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCceeeeccCh---HHhhcCCCccceeec---cCchh-HHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 333 GRGHIVKWAPQ---QEVLAHPAVGGFLTH---GGWNS-TLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 333 ~~~~~~~~vp~---~~ll~~~~~~~~I~H---GG~gs-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
.++.+..+++. ..++..+++ ++.. .|.|. +.||+++|+|+|.... ......+.+ .+.|. +.....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~-~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVED-GETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcC-CCceE-ecCCCC
Confidence 45677788882 346777776 7766 35544 5999999999976653 334444444 23466 433227
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHH-HHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 406 RREIEIAVRRVMIETEGQEMRERILY-SKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
.+.+.+++..++++ ...++.... ..+... +..+.....+.+.+.+.
T Consensus 329 ~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 329 VEELADALEQLLED---PELREELGEAARERVE----EEFSWERIAEQLLELYE 375 (381)
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHH
Confidence 89999999999998 322222221 222222 34456666666655553
No 160
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.33 E-value=5.9 Score=35.65 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=28.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPL 55 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 55 (460)
|||++.-=.+. |---...|++.|. .+++|+++.|..+..
T Consensus 1 mrILlTNDDGi-~a~Gi~aL~~al~-~~~dV~VVAP~~~qS 39 (252)
T COG0496 1 MRILLTNDDGI-HAPGIRALARALR-EGADVTVVAPDREQS 39 (252)
T ss_pred CeEEEecCCcc-CCHHHHHHHHHHh-hCCCEEEEccCCCCc
Confidence 56666554443 6666788999998 999999999985554
No 161
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.27 E-value=0.79 Score=37.31 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=37.9
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
|++++|++.+.++-+|-.-..-++..|.++|++|++++...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v 41 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT 41 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 57899999999999999999999999999999999998753
No 162
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=87.73 E-value=26 Score=33.32 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=54.2
Q ss_pred CCHHHHHHHH-HHHhhC-CCceEEEEcCCcccchhhhccCchhHHHh--hcCCceeeeccChHH---hhcCCCccceeec
Q 012613 286 IDETEFLEIA-WGLANS-RVPFLWVVRPGLVREAEWLELLPTGFVEM--LDGRGHIVKWAPQQE---VLAHPAVGGFLTH 358 (460)
Q Consensus 286 ~~~~~~~~~~-~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~vp~~~---ll~~~~~~~~I~H 358 (460)
...+.+..++ +.+.+. +.||++.-.++...+ -+.+.|+ ..+++.+.+-+||++ +|...++ |++-
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~-------lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--Flnt 278 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRID-------LEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNT 278 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCcccch-------HHHHHHHhhccCceEEecccchHHHHHHHhcCcE--Eecc
Confidence 3445555544 344433 567777655543222 1222232 347778899999875 7888887 8865
Q ss_pred cC----chhHHHhHhcCCceeeccccc
Q 012613 359 GG----WNSTLESICEGVPMICQPYLG 381 (460)
Q Consensus 359 GG----~gs~~eal~~GvP~v~~P~~~ 381 (460)
+= .-++.||..+|.|+|..-..+
T Consensus 279 SlTEafc~~ivEAaScGL~VVsTrVGG 305 (426)
T KOG1111|consen 279 SLTEAFCMVIVEAASCGLPVVSTRVGG 305 (426)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 43 236789999999999865443
No 163
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.49 E-value=2.1 Score=43.49 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=65.6
Q ss_pred CCceeeeccC--h-HHhhcCCCccceeecc---CchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCH
Q 012613 333 GRGHIVKWAP--Q-QEVLAHPAVGGFLTHG---GWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVER 406 (460)
Q Consensus 333 ~~~~~~~~vp--~-~~ll~~~~~~~~I~HG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (460)
.++.+.++.+ + ...+..+++ +|.=+ |.+|..||+.+|+|+| .......|++ ..=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe---CCH
Confidence 3556778777 3 347877776 88766 7789999999999999 3444556666 3556555 367
Q ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Q 012613 407 REIEIAVRRVMIETE-GQEMRERILYSKEKAH 437 (460)
Q Consensus 407 ~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~ 437 (460)
.+|.++|..+|.+.. ++.+...+-+.++++-
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999943 5556666665555554
No 164
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.29 E-value=1.1 Score=35.45 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=26.5
Q ss_pred ceEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQG---HINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~G---H~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|||+|+.-|-.+ .-.....++.+-++|||+|.++.+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 688888887643 3356789999999999999998875
No 165
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.10 E-value=13 Score=33.62 Aligned_cols=38 Identities=5% Similarity=0.036 Sum_probs=26.2
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
||||+.-=.+. |---...|+++|++ +|+|+++.|....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 56666554443 44557788889964 6899999987444
No 166
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.54 E-value=2.6 Score=35.04 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=43.0
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE-EeCCCCCCCCCCCCCeEEEEcCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITI-IHTNLNPLNACNYPHFEFHSISA 70 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~-~~~~~~~~~~~~~~gi~~~~~~~ 70 (460)
..|+|.+...|+.|-..-.+.+++.|.++|+.|-= ++++ -...-.. .|++.+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E-VR~gGkR-~GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE-VREGGKR-IGFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee-eecCCeE-eeeEEEEccC
Confidence 36999999999999999999999999999999874 4443 2222122 5777777763
No 167
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=86.41 E-value=4.2 Score=41.38 Aligned_cols=104 Identities=11% Similarity=0.061 Sum_probs=60.3
Q ss_pred ChHHhhcCCCccceee---ccCch-hHHHhHhcCCceeeccccc-chhhhHHHhhhhheeeEecCC------ccCHHHHH
Q 012613 342 PQQEVLAHPAVGGFLT---HGGWN-STLESICEGVPMICQPYLG-DQMVNARYISHVWRLGLHLDG------NVERREIE 410 (460)
Q Consensus 342 p~~~ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l~~------~~~~~~l~ 410 (460)
+..+++..|++ +|. +=|+| +..||+++|+|+|+....+ ..+.. ..+...-..|+.+.. .-+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 46678888888 776 34544 8999999999999987643 22221 222220024655542 34567888
Q ss_pred HHHHHHhccccHHHHHHH--HHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 012613 411 IAVRRVMIETEGQEMRER--ILYSKEKAHLCLKPGGSSYQSLERLIDH 456 (460)
Q Consensus 411 ~ai~~vl~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (460)
+++.++++..+.+.+.++ ++++++++ +..+.+...++.
T Consensus 544 ~~m~~~~~~~~r~~~~~r~~~~r~s~~f--------~W~~~~~~Y~~A 583 (590)
T cd03793 544 QYMYEFCQLSRRQRIIQRNRTERLSDLL--------DWRNLGRYYRKA 583 (590)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHH
Confidence 888888865322222222 22444433 356666655554
No 168
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=85.41 E-value=15 Score=34.27 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=80.2
Q ss_pred EEEEEccCcccCCHHHHHHHHHHHhh---CCCceEEEEcCCcccchhhhccCchhHHHhhc-CCcee-eeccCh---HHh
Q 012613 275 VIYVSFGSVVNIDETEFLEIAWGLAN---SRVPFLWVVRPGLVREAEWLELLPTGFVEMLD-GRGHI-VKWAPQ---QEV 346 (460)
Q Consensus 275 vI~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~vp~---~~l 346 (460)
.+-|-.|..+..+...+ ++++++.+ .+.++++-.+.+..+. +....+-..-.+-.+ +++.+ .+++|. .++
T Consensus 146 ~~tIlvGNSgd~SN~Hi-e~L~~l~~~~~~~v~ii~PlsYp~gn~-~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~l 223 (322)
T PRK02797 146 KMTILVGNSGDRSNRHI-EALRALHQQFGDNVKIIVPMGYPANNQ-AYIEEVRQAGLALFGAENFQILTEKLPFDDYLAL 223 (322)
T ss_pred ceEEEEeCCCCCcccHH-HHHHHHHHHhCCCeEEEEECCcCCCCH-HHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHH
Confidence 34445576665333333 33444432 3456777666532111 100111111112223 34454 477774 569
Q ss_pred hcCCCccceeec--cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhc
Q 012613 347 LAHPAVGGFLTH--GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMI 418 (460)
Q Consensus 347 l~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~ 418 (460)
|+.||++.|+|+ =|.||++-.+..|+|+++-- +-+.|....+. |+=+-.+. .++...++++=+++..
T Consensus 224 L~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~e~--gv~Vlf~~d~L~~~~v~e~~rql~~ 293 (322)
T PRK02797 224 LRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLTEQ--GLPVLFTGDDLDEDIVREAQRQLAS 293 (322)
T ss_pred HHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHHhC--CCeEEecCCcccHHHHHHHHHHHHh
Confidence 999999777776 48999999999999999753 34556554333 77775566 7888888887555443
No 169
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=84.81 E-value=1.4 Score=42.65 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCceee-eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecC----C--ccC
Q 012613 333 GRGHIV-KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLD----G--NVE 405 (460)
Q Consensus 333 ~~~~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~----~--~~~ 405 (460)
.++... +..+-.++|..+|+ +||--. +.+.|.+..+.|+|......|+.... .|.-.... + --+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCC
Confidence 344544 44567789999998 999884 58999999999999988766665322 13333321 1 357
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 012613 406 RREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLI 454 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (460)
.++|.++|..++++. ..++++.+++.+++.. ...|.+.++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 799999999998872 3456777777777753 334555555555544
No 170
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=84.50 E-value=5.2 Score=31.46 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=32.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+++...+..-|-.-...++..|.++||+|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 788999999999999999999999999999988553
No 171
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=84.18 E-value=28 Score=31.80 Aligned_cols=109 Identities=8% Similarity=-0.015 Sum_probs=56.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhC---CCeEEEEeCCCCCCCCC----CCCCeEEEEcCCCCCCCccCcccHHHHHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSK---GFSITIIHTNLNPLNAC----NYPHFEFHSISASLSETEASTEDMVAILI 87 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~r---Gh~V~~~~~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
||||+.-=.+. |---+..|+++|... |++|+++.|........ -..-++...+.++ .+..+..+..-..
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~---~yav~GTPaDCV~ 76 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR---RFAAEGSPADCVL 76 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC---eEEEcCchHHHHH
Confidence 45555443332 444466777877663 47999999975443221 1123444444321 1333333333222
Q ss_pred HHHHhcchhHHHHHHHhhccCCCCCCCeeEEEEC----------Ccc---hhHHHHHHHcCCCeEEEeC
Q 012613 88 ALNAKCVVPFWDCLVKLTSISNVQEDSFACIITD----------PLW---YFVHAVANDFKLPTIILQT 143 (460)
Q Consensus 88 ~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D----------~~~---~~~~~vA~~lgIP~v~~~~ 143 (460)
... ..+.. . . +||+||+- .++ ..+..-|..+|||.+.++.
T Consensus 77 lal-----------~~~~~---~-~-~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 77 AAL-----------YDVMK---D-A-PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHH-----------HHhcC---C-C-CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 211 11111 0 2 78888863 222 3445567788999999985
No 172
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.11 E-value=6.8 Score=33.80 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC-----CC-CCCCCCCCeEEEEcCCCCCCCccCcccHHHH
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL-----NP-LNACNYPHFEFHSISASLSETEASTEDMVAI 85 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~-----~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
+++..|.+++..+.|-....+.+|-+.+.+|+.|.++---- .. ......+++++.....++.-.. .+...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~e- 95 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET---QDRER- 95 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC---CCcHH-
Confidence 35688999999999999999999999999999999874221 11 1112225788888776543221 11111
Q ss_pred HHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcch
Q 012613 86 LIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWY 125 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~ 125 (460)
-...+...+....+.+.. . .+|+||-|-...
T Consensus 96 ---~~~~~~~~~~~a~~~l~~-----~-~ydlvVLDEi~~ 126 (191)
T PRK05986 96 ---DIAAAREGWEEAKRMLAD-----E-SYDLVVLDELTY 126 (191)
T ss_pred ---HHHHHHHHHHHHHHHHhC-----C-CCCEEEEehhhH
Confidence 112222333333444433 3 789999997653
No 173
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=84.01 E-value=1.5 Score=35.30 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=30.3
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
|||++...|+.+=+. ...+.++|.++|++|.++.++.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCc
Confidence 688888888865555 9999999999999999998873
No 174
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=81.84 E-value=2.3 Score=33.55 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=32.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
||++.+.++-.|.....-++..|..+|++|++....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588999999999999999999999999999887754
No 175
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=81.08 E-value=14 Score=30.98 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=58.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCC--CCC-CCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITII---HTN--LNP-LNACNYPHFEFHSISASLSETEASTEDMVAILIA 88 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~---~~~--~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
.-|.+++.++.|-....+.+|-+.+.+|+.|.++ .+. ... ......+++++.....+..-.. .+....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~---~~~~~~--- 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT---ENDEED--- 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC---CChHHH---
Confidence 5678888889999999999999999999999994 332 111 1112335788888775433211 111111
Q ss_pred HHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcch
Q 012613 89 LNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWY 125 (460)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~ 125 (460)
...+...+....+.+.. . .+|+||-|-...
T Consensus 77 -~~~a~~~~~~a~~~~~~-----~-~~dLlVLDEi~~ 106 (159)
T cd00561 77 -IAAAAEGWAFAKEAIAS-----G-EYDLVILDEINY 106 (159)
T ss_pred -HHHHHHHHHHHHHHHhc-----C-CCCEEEEechHh
Confidence 11222223323333323 2 789999997653
No 176
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=80.28 E-value=2.9 Score=36.26 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCccCHHH-HHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINP-MLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p-~~~La~~L~~rGh~V~~~~~~ 51 (460)
+++||++--.|+. ..+- ...++++|.++||+|.++.++
T Consensus 4 ~~k~IllgVTGsi-aa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSH-CTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHH-HHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 4678888878875 4555 799999999999999999886
No 177
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=80.16 E-value=9.6 Score=41.10 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=62.4
Q ss_pred HhhcCCCccceeecc---Cch-hHHHhHhcCCc---eeecc-cccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHH
Q 012613 345 EVLAHPAVGGFLTHG---GWN-STLESICEGVP---MICQP-YLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRV 416 (460)
Q Consensus 345 ~ll~~~~~~~~I~HG---G~g-s~~eal~~GvP---~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~v 416 (460)
+++..+|+ ||.-. |+| +..|++++|+| +++++ +.+ .+..+ . .-|+.+.. .+.+.++++|.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~~l-~--~~allVnP-~D~~~lA~AI~~a 440 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQSL-G--AGALLVNP-WNITEVSSAIKEA 440 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chhhh-c--CCeEEECC-CCHHHHHHHHHHH
Confidence 58888898 77554 777 67799999999 44444 322 22211 1 24666666 6889999999999
Q ss_pred hccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 417 MIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 417 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
|+... +.-+++.+++.+... ......-++.+++.++
T Consensus 441 L~m~~-~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 441 LNMSD-EERETRHRHNFQYVK-----THSAQKWADDFMSELN 476 (797)
T ss_pred HhCCH-HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHH
Confidence 98321 234455555555554 3345666666666554
No 178
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.68 E-value=27 Score=37.36 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=65.1
Q ss_pred eeeccChHH---hhcCCCccceeecc---Cch-hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHH
Q 012613 337 IVKWAPQQE---VLAHPAVGGFLTHG---GWN-STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREI 409 (460)
Q Consensus 337 ~~~~vp~~~---ll~~~~~~~~I~HG---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l 409 (460)
+.+++++.+ ++..+|+ ||.-+ |+| ++.|++++|+|-.+.|+..+--.-+. + +.-|+.+.. .+.+.+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHH
Confidence 346788764 7888888 77542 544 78899999775222222111111111 2 222555555 578999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 410 EIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 410 ~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
+++|.++|+... ...+++.+++++.+. ..+...-++.+++.+++
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 999999998522 234444445555543 35677777777776653
No 179
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.37 E-value=16 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=23.6
Q ss_pred HhhcCCCccceee--ccCchhH----HHhHhcCCceeec
Q 012613 345 EVLAHPAVGGFLT--HGGWNST----LESICEGVPMICQ 377 (460)
Q Consensus 345 ~ll~~~~~~~~I~--HGG~gs~----~eal~~GvP~v~~ 377 (460)
+++.+.+++++|| .||.|.+ ..|...|+|+|++
T Consensus 191 al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI 229 (256)
T TIGR00715 191 ALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRI 229 (256)
T ss_pred HHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEE
Confidence 5888888888887 3555444 4467778888887
No 180
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=79.10 E-value=2.6 Score=36.32 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=24.9
Q ss_pred CceEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCC
Q 012613 14 GKRVILFPLPYQGHINP------------MLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p------------~~~La~~L~~rGh~V~~~~~~~ 52 (460)
++||++...|+.=.+.| -..||+++..||++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45555555554433332 4689999999999999999973
No 181
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=79.07 E-value=5.5 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=31.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITII 48 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~ 48 (460)
.+-++++..+...|...+..+|+.|.++|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 37788888888899999999999999999998764
No 182
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=78.16 E-value=14 Score=31.28 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=58.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCC--CCC-CCCCCCCCeEEEEcCCCCCCCccCcccHHHHHH
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITII---HTN--LNP-LNACNYPHFEFHSISASLSETEASTEDMVAILI 87 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~---~~~--~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 87 (460)
+.-|.+++..+.|-..-.+.+|-+.+.+|+.|.++ -+. ... ..... .++++.....++.-.. .+....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~---~~~~~~-- 78 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWET---QNREAD-- 78 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECCCCCeecC---CCcHHH--
Confidence 45678888899999999999999999999999765 222 111 11122 2688888776553221 111111
Q ss_pred HHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcc
Q 012613 88 ALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW 124 (460)
Q Consensus 88 ~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~ 124 (460)
...+...+....+.+.. . .+|+||-|-..
T Consensus 79 --~~~~~~~~~~a~~~l~~-----~-~~DlvVLDEi~ 107 (173)
T TIGR00708 79 --TAIAKAAWQHAKEMLAD-----P-ELDLVLLDELT 107 (173)
T ss_pred --HHHHHHHHHHHHHHHhc-----C-CCCEEEehhhH
Confidence 11122333333333433 3 78999999765
No 183
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=77.63 E-value=47 Score=31.58 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=82.3
Q ss_pred eEEEEEccCcccCCHHHHHHHHHHHhh---CCCceEEEEcCCcccchhhhccCchhHHHhhc-CCcee-eeccCh---HH
Q 012613 274 SVIYVSFGSVVNIDETEFLEIAWGLAN---SRVPFLWVVRPGLVREAEWLELLPTGFVEMLD-GRGHI-VKWAPQ---QE 345 (460)
Q Consensus 274 ~vI~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~vp~---~~ 345 (460)
..+.|=.|..+..+...+. +++++++ .+.++++-.+.+..+. +....+-..-.+..+ +|+.+ .+++|. .+
T Consensus 184 ~~ltILvGNSgd~sNnHie-aL~~L~~~~~~~~kIivPLsYg~~n~-~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIE-ALEALKQQFGDDVKIIVPLSYGANNQ-AYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CceEEEEcCCCCCCccHHH-HHHHHHHhcCCCeEEEEECCCCCchH-HHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 3455555666653333333 2333332 2566776666543110 101111111111223 35554 578885 45
Q ss_pred hhcCCCccceeec--cCchhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhc
Q 012613 346 VLAHPAVGGFLTH--GGWNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMI 418 (460)
Q Consensus 346 ll~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~ 418 (460)
+|..||++.|.|. =|.|+++-.|..|+|+++-- +-+.|-...+. |+-+-... .++...|+++=+++.+
T Consensus 262 lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~~l~~~--~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQDLKEQ--GIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred HHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHHHHHhC--CCeEEeccccCCHHHHHHHHHHHhh
Confidence 9999999666664 48999999999999998753 34555444443 77776666 8999999999888865
No 184
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=77.40 E-value=17 Score=35.95 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=55.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcc
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCV 94 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
+|+.++..+.. .+.+++.|.+-|-+|..+++........+ ..... + +.+...... .
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~-~~~~~~v~~---------------~ 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--L-EMLGVEVKY---------------R 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--H-HhcCCCcee---------------c
Confidence 58888887775 88899999999999999877522111110 00000 0 001000000 1
Q ss_pred hhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEe
Q 012613 95 VPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQ 142 (460)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~ 142 (460)
..+.+.++.+.+ . +||++|.... ...+|+++|||.+.+.
T Consensus 342 ~dl~~~~~~l~~-----~-~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLEDDMEAVLE-----F-EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHHHHHHHHhh-----C-CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 123222344434 4 8999999843 5568999999999964
No 185
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=76.46 E-value=17 Score=33.34 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=33.4
Q ss_pred eeeeccChHHhhcCCCccceeeccCchhHHHhHhcCCceeeccc
Q 012613 336 HIVKWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQPY 379 (460)
Q Consensus 336 ~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 379 (460)
.+.+-++-.+|+.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34466778899999997 7777664 78999999999999874
No 186
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=76.00 E-value=93 Score=31.42 Aligned_cols=168 Identities=17% Similarity=0.079 Sum_probs=101.5
Q ss_pred EEEEEccCccc-CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccCh---HHhhcCC
Q 012613 275 VIYVSFGSVVN-IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQ---QEVLAHP 350 (460)
Q Consensus 275 vI~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~---~~ll~~~ 350 (460)
+++..-|.... -..+.+..+++-+-+.+.++++.-.+ .. . .+.--....++.+.++.+.-|.+. ..+++-+
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~g-d~-~---le~~~~~la~~~~~~~~~~i~~~~~la~~i~aga 369 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTG-DP-E---LEEALRALASRHPGRVLVVIGYDEPLAHLIYAGA 369 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecC-cH-H---HHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcC
Confidence 44444344333 23344444444444445555554333 21 1 111112233344455566655543 2366666
Q ss_pred Cccceeec-----cCchhHHHhHhcCCceeeccccc------chhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 351 AVGGFLTH-----GGWNSTLESICEGVPMICQPYLG------DQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 351 ~~~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
|+ ++.- ||. |=++|+++|.+-|+.+..+ |--.++ .... |.|...... +++.+..++++.+.
T Consensus 370 D~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~~-~~~~l~~al~rA~~- 441 (487)
T COG0297 370 DV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQT-NPDHLANALRRALV- 441 (487)
T ss_pred CE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEecC-CHHHHHHHHHHHHH-
Confidence 65 6653 454 6678999999888888764 322222 4554 788777775 99999999998884
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 420 TEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
.|++.-..++...+.++...-|.++.+.+.++..++
T Consensus 442 ----~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~ 477 (487)
T COG0297 442 ----LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKP 477 (487)
T ss_pred ----HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHH
Confidence 466655556666666777888899999999988765
No 187
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=74.99 E-value=3.8 Score=34.83 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=23.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|||.++.-- |+.- ..|+++...|||+||-++..
T Consensus 1 mKIaiIgAs--G~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGAS--GKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecC--chhH--HHHHHHHHhCCCeeEEEEeC
Confidence 577666543 3332 36889999999999998874
No 188
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=74.87 E-value=5.2 Score=32.52 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+++.||++.+.+.-||=.-..-+++.|++.|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 478999999999999999999999999999999987554
No 189
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.30 E-value=58 Score=29.90 Aligned_cols=111 Identities=20% Similarity=0.147 Sum_probs=63.4
Q ss_pred eeeeccChH---HhhcCCCccceeeccCchhHHHhHhcCCcee--ecccccchhhhH--HHhhhhheeeEecCC--ccCH
Q 012613 336 HIVKWAPQQ---EVLAHPAVGGFLTHGGWNSTLESICEGVPMI--CQPYLGDQMVNA--RYISHVWRLGLHLDG--NVER 406 (460)
Q Consensus 336 ~~~~~vp~~---~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v--~~P~~~DQ~~na--~~v~~~~G~G~~l~~--~~~~ 406 (460)
.+..|+||+ +||--||+ -+- -|--|+.-|..+|.|.+ +.| |..|. ..++. -+++ ..-+
T Consensus 241 vklPFvpqddyd~LL~lcD~--n~V-RGEDSFVRAq~agkPflWHIYp----QdentHl~KLea------Fldky~~~lp 307 (370)
T COG4394 241 VKLPFVPQDDYDELLWLCDF--NLV-RGEDSFVRAQLAGKPFLWHIYP----QDENTHLAKLEA------FLDKYCPFLP 307 (370)
T ss_pred EEecCCcHhHHHHHHHhccc--cee-ecchHHHHHHHcCCCcEEEecC----CccccHHHHHHH------HHHHhCCCCC
Confidence 556899975 48888987 222 46779999999999998 445 44433 33332 1221 1222
Q ss_pred HHHHHHHHHHhc----cc---cHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhc
Q 012613 407 REIEIAVRRVMI----ET---EGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHILS 459 (460)
Q Consensus 407 ~~l~~ai~~vl~----~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (460)
....+++++... ++ .++.+.++.+.+++..++=.+.....-..+++++.++++
T Consensus 308 ~~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek 367 (370)
T COG4394 308 PNTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEK 367 (370)
T ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 233334433321 11 134455555555555554444455677788888888775
No 190
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=73.88 E-value=28 Score=34.36 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=52.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcc
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCV 94 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
+|+.++..+.. .+.+++-|.+-|-+|..+++........+ ..... ++. ........
T Consensus 281 gkv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~-~~~~~--l~~-~~~~v~~~--------------- 336 (416)
T cd01980 281 GRVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSA-PDYEW--LSA-LGVEVRYR--------------- 336 (416)
T ss_pred ceEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhH-HHHHH--HHh-cCCccccC---------------
Confidence 46666555543 55699999999999999888632111000 00000 000 00000001
Q ss_pred hhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeC
Q 012613 95 VPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQT 143 (460)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~ 143 (460)
..+.+....+.+ . +||++|... .+..+|+++|||.+.+..
T Consensus 337 ~~~~~~~~~~~~-----~-~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 337 KSLEDDIAAVEE-----Y-RPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCHHHHHHHHhh-----c-CCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 112222233333 3 899999884 366799999999998653
No 191
>PRK14099 glycogen synthase; Provisional
Probab=72.23 E-value=6.7 Score=39.67 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCCceEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 12 RNGKRVILFPLP------YQGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 12 ~~~~~Il~~~~~------~~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
|++|||++++.- +.|=-...-.|.++|+++||+|.++.|-+.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~ 48 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYP 48 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 467999999842 123334566788999999999999999643
No 192
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=71.91 E-value=56 Score=27.01 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=70.5
Q ss_pred EEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccc
Q 012613 275 VIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGG 354 (460)
Q Consensus 275 vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~ 354 (460)
.|-|-+||.+ +....+++...|++.|..+-+.+-+.. ..|+.+.+ + ..-+.+..++.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH--------R~p~~l~~----------~---~~~~~~~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH--------RTPERLLE----------F---VKEYEARGADV 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT--------TSHHHHHH----------H---HHHTTTTTESE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--------CCHHHHHH----------H---HHHhccCCCEE
Confidence 4555567776 567788888999988876666555433 24444411 1 11122212233
Q ss_pred eeeccCch----hHHHhHhcCCceeecccccchhhhHH----HhhhhheeeEecCC---ccCHHHHHHHHHHHhccccHH
Q 012613 355 FLTHGGWN----STLESICEGVPMICQPYLGDQMVNAR----YISHVWRLGLHLDG---NVERREIEIAVRRVMIETEGQ 423 (460)
Q Consensus 355 ~I~HGG~g----s~~eal~~GvP~v~~P~~~DQ~~na~----~v~~~~G~G~~l~~---~~~~~~l~~ai~~vl~~~~~~ 423 (460)
||.=.|.. ++..++ .-.|+|.+|...++..... .+.---|+++..-. ..++..+...|-. +.| +
T Consensus 59 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa-~~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILA-LKD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHH-TT----H
T ss_pred EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHh-cCC---H
Confidence 88877754 333333 3799999999877543222 22210155543322 2344444444432 345 6
Q ss_pred HHHHHHHHHHHHHHH
Q 012613 424 EMRERILYSKEKAHL 438 (460)
Q Consensus 424 ~~~~~a~~~~~~~~~ 438 (460)
.++++.+..++++++
T Consensus 134 ~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 134 ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888888888773
No 193
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=71.73 E-value=11 Score=33.69 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=25.4
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCccH
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSSV 146 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~~ 146 (460)
-||+++ .|+.. -.|..=|.++|||+|.+.-+..
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 489866 78777 5566679999999999876533
No 194
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=70.76 E-value=1.2e+02 Score=30.28 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=61.5
Q ss_pred CCceee-eccC-h-HHhhcCCCccceeeccC--chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHH
Q 012613 333 GRGHIV-KWAP-Q-QEVLAHPAVGGFLTHGG--WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERR 407 (460)
Q Consensus 333 ~~~~~~-~~vp-~-~~ll~~~~~~~~I~HGG--~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (460)
+|+.+. ++.+ . .+++..|++=+-|+||+ ..++.||+.+|+|++..=...... ..+.. |-... .-+.+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~-~~~~~ 399 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFE-HNEVD 399 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----Cceec-CCCHH
Confidence 555655 6677 3 46999999977788876 669999999999999876442211 11111 22222 34689
Q ss_pred HHHHHHHHHhccccHH-HHHHHHHHHHHH
Q 012613 408 EIEIAVRRVMIETEGQ-EMRERILYSKEK 435 (460)
Q Consensus 408 ~l~~ai~~vl~~~~~~-~~~~~a~~~~~~ 435 (460)
++.++|.++|.+ + .++++..+-++.
T Consensus 400 ~m~~~i~~lL~d---~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 400 QLISKLKDLLND---PNQFRELLEQQREH 425 (438)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHH
Confidence 999999999998 4 455544444443
No 195
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=70.39 E-value=10 Score=37.84 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=34.2
Q ss_pred CCceEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCCC
Q 012613 13 NGKRVILFPLPYQGHINPM------------LQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~------------~~La~~L~~rGh~V~~~~~~~ 52 (460)
+++||++...|+.=.+.|. ..||+++..+|++||+++++.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 5789999988887777664 689999999999999999874
No 196
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=70.35 E-value=7.9 Score=33.61 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=24.6
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCcc
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSS 145 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~ 145 (460)
.||+|| .|+.. ..+..=|.++|||+|.+..+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 799987 55444 556677999999999987664
No 197
>PRK09620 hypothetical protein; Provisional
Probab=69.20 E-value=25 Score=31.41 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCccCHH------------HHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHIN------------PMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~------------p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++++|++...|+.=.+. --..||++|..+|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45677776655332221 1367899999999999999765
No 198
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=69.13 E-value=46 Score=29.38 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=27.3
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 17 VILFPLP-YQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 17 Il~~~~~-~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|.+.+.. ..|-..-...|++.|+++|++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 3444444 459999999999999999999988764
No 199
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=68.29 E-value=7.1 Score=33.61 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=31.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 4688888888777777779999999999999998886
No 200
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.27 E-value=59 Score=32.37 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHH---
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIAL--- 89 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~--- 89 (460)
+++++.++.-+ .-.+.+++.|.+-|-+|..+.+....... .......+...
T Consensus 302 ~gkrv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~---------------------~~~~~~~l~~~~~~ 355 (435)
T cd01974 302 HGKKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRF---------------------EKEMQALLDASPYG 355 (435)
T ss_pred CCCEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHH---------------------HHHHHHHHhhcCCC
Confidence 46788777533 33788888888889999777664211100 00011111000
Q ss_pred ---HHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEe
Q 012613 90 ---NAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQ 142 (460)
Q Consensus 90 ---~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~ 142 (460)
.-.....+.++.+.+++ . +||++|.... ...+|+++|||++.+.
T Consensus 356 ~~~~v~~~~d~~e~~~~i~~-----~-~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 356 AGAKVYPGKDLWHLRSLLFT-----E-PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CCcEEEECCCHHHHHHHHhh-----c-CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 00111234444455544 4 8999999864 5679999999998765
No 201
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=68.25 E-value=40 Score=28.98 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC-CC----CCCCC--CCCeEEEEcCCCCCCCccCcccHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL-NP----LNACN--YPHFEFHSISASLSETEASTEDMVAI 85 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~-~~----~~~~~--~~gi~~~~~~~~~~~~~~~~~~~~~~ 85 (460)
++.-|.+++..+.|-....+.+|-+-..+|.+|.++---- .+ ..... ..++.|+..++++..+.. +...-
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~---~~~~d 103 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQ---DREAD 103 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCc---CcHHH
Confidence 3566888899999999999999988888999988764210 01 11111 146888888877764422 11111
Q ss_pred HHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcch
Q 012613 86 LIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLWY 125 (460)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~ 125 (460)
. ..+........+.+.+ . ++|+||.|-+++
T Consensus 104 ~----~aa~~~w~~a~~~l~~-----~-~ydlviLDEl~~ 133 (198)
T COG2109 104 I----AAAKAGWEHAKEALAD-----G-KYDLVILDELNY 133 (198)
T ss_pred H----HHHHHHHHHHHHHHhC-----C-CCCEEEEehhhH
Confidence 1 2333334444455544 4 899999998764
No 202
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=67.70 E-value=71 Score=33.96 Aligned_cols=102 Identities=13% Similarity=0.210 Sum_probs=60.5
Q ss_pred eEEEEcCCC-ccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHH-hc
Q 012613 16 RVILFPLPY-QGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNA-KC 93 (460)
Q Consensus 16 ~Il~~~~~~-~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (460)
.|.+.+..+ .|-..-.+.|++.|.++|.+|.++-|-... | +. .......+.. ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~--------------p--~~--------~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP--------------P--LT--------MSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC--------------C--CC--------HHHHHHHHhccCC
Confidence 566665554 599999999999999999999998764211 1 10 0000000000 11
Q ss_pred chhHHHHHHHhhccCCCCCCCeeEEEECCcch---------hHHHHHHHcCCCeEEEeCcc
Q 012613 94 VVPFWDCLVKLTSISNVQEDSFACIITDPLWY---------FVHAVANDFKLPTIILQTSS 145 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~---------~~~~vA~~lgIP~v~~~~~~ 145 (460)
...+..+++.+.. ... +.|+||+|.... ....+|+.++.|++.+....
T Consensus 60 ~~~~~~I~~~~~~---l~~-~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHA---LAK-DCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHH---hcc-CCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 1222233333322 112 789999776542 23568999999999987553
No 203
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.39 E-value=12 Score=32.83 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=35.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++.+|++.+.++-.|-....-++.-|...|++|+.++..
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 367999999999999999999999999999999888764
No 204
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=65.41 E-value=58 Score=28.48 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhc-CCceeeeccChHHhhcC
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLD-GRGHIVKWAPQQEVLAH 349 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~vp~~~ll~~ 349 (460)
.++++++|.-|.++ ...++.|.+.|..+.++.+. ..+.+.+..+ .++..........-+..
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~-----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE-----------LTENLVKLVEEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC-----------CCHHHHHHHhCCCEEEEecCCChhhcCC
Confidence 36788998877665 34555566667666555322 1122222222 12233333334556777
Q ss_pred CCccceeeccCchhHHHhHh----cCCceeecccccchhh-----hHHHhhhhheeeEecC--C--ccCHHHHHHHHHHH
Q 012613 350 PAVGGFLTHGGWNSTLESIC----EGVPMICQPYLGDQMV-----NARYISHVWRLGLHLD--G--NVERREIEIAVRRV 416 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~-----na~~v~~~~G~G~~l~--~--~~~~~~l~~ai~~v 416 (460)
+++ +|.--+...+.+.++ .++++-++ |.+. .-..+.+. ++-+.+. + ..-+..|++.|.++
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~ 143 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEAL 143 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHH
Confidence 777 887777665555544 45554332 3332 22333332 4444443 2 33446788888887
Q ss_pred hccccHHHHHHHHHHHHHHHHHh
Q 012613 417 MIETEGQEMRERILYSKEKAHLC 439 (460)
Q Consensus 417 l~~~~~~~~~~~a~~~~~~~~~~ 439 (460)
+.. +...+-+.+.++++.+++.
T Consensus 144 ~~~-~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 144 YDE-SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred cch-hHHHHHHHHHHHHHHHHHh
Confidence 733 2246777788888888753
No 205
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=65.40 E-value=8 Score=34.91 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=52.4
Q ss_pred CCeEEEEEccCccc---CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCC-ceeeec--cCh-H
Q 012613 272 PKSVIYVSFGSVVN---IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGR-GHIVKW--APQ-Q 344 (460)
Q Consensus 272 ~~~vI~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~--vp~-~ 344 (460)
+++.|.+..|+... ++.+.+..+++.+.+.+.++++..+.... +.+ .-+.+.+..+.+ +.+.+- +.+ .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-EKE----IADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-HHH----HHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-HHH----HHHHHHHhcccceEeecCCCCHHHHH
Confidence 55777777777553 77888999999998877565544433210 101 111111111111 122222 233 4
Q ss_pred HhhcCCCccceeeccCchhHHHhHhcCCceeec
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 377 (460)
.++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 69999996 7765 457899999999999998
No 206
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.10 E-value=53 Score=29.32 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=28.7
Q ss_pred hhHHHHHHHhhccCCCCCCCeeEEEECCcch---hHHHHHHHcCCCeEEE
Q 012613 95 VPFWDCLVKLTSISNVQEDSFACIITDPLWY---FVHAVANDFKLPTIIL 141 (460)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~---~~~~vA~~lgIP~v~~ 141 (460)
..++.+++.+.+ -++.+.|..+. -+..+|...|||++.=
T Consensus 138 ~aM~~~m~~Lk~--------r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 138 DAMEKLMEALKE--------RGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHHHHHHH--------CCeEEEcccccccchhhhhHhhcCCceeee
Confidence 345556777755 48999998873 3456899999999883
No 207
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.80 E-value=13 Score=32.31 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=36.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
.+.+|++.+.++-.|-....-++.-|..+|++|++++...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v 122 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV 122 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 4679999999999999999999999999999999998753
No 208
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=64.42 E-value=40 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 22 LPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 22 ~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
.++.|-..-.+.|++.|+++|.+|.++-|
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~kP 34 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYYKP 34 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45668999999999999999999998743
No 209
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=64.37 E-value=14 Score=34.85 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=25.1
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCccH
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSSV 146 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~~ 146 (460)
.||+|| .|+.. ..+..=|.++|||+|.+.-+..
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 689877 56655 5666779999999999876533
No 210
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=64.22 E-value=17 Score=31.20 Aligned_cols=103 Identities=13% Similarity=0.017 Sum_probs=52.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeCCCCCCC-C--CCCCCeEEEEcCCCCCCCccCcccHHHHHHHH
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFS--ITIIHTNLNPLN-A--CNYPHFEFHSISASLSETEASTEDMVAILIAL 89 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~--V~~~~~~~~~~~-~--~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
|||+|+.+++. ..+..+.++|.+++|+ +..+.+...... . ....++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKN----------------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGG-----------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEeccccC-----------------
Confidence 79999977774 4567778899999998 444443211111 0 000122222221100
Q ss_pred HHhcchhHH-HHHHHhhccCCCCCCCeeEEEECCcc-hhHHHHHHHcCCCeEEEeCc
Q 012613 90 NAKCVVPFW-DCLVKLTSISNVQEDSFACIITDPLW-YFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 90 ~~~~~~~l~-~~l~~l~~~~~~~~~~pDlvi~D~~~-~~~~~vA~~lgIP~v~~~~~ 144 (460)
........ +.++.+.+ . +||++|+-.+. .....+-......++-++++
T Consensus 61 -~~~~~~~~~~~~~~l~~-----~-~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 -FQPRSENDEELLELLES-----L-NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -SSSHHHHHHHHHHHHHH-----T-T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -CCchHhhhhHHHHHHHh-----h-ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 00000111 23444444 3 89999887654 33344556777778888776
No 211
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=63.65 E-value=30 Score=25.58 Aligned_cols=79 Identities=10% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchhHHHHHHHhhccCCC
Q 012613 31 MLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVVPFWDCLVKLTSISNV 110 (460)
Q Consensus 31 ~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 110 (460)
++.+++.|.+.|+++ +++.. ......+ .|+.+...-....++ . ...++.++.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~-~Gi~~~~~~~ki~~~-----~----------------~~i~~~i~~---- 53 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLRE-AGLPVKTLHPKVHGG-----I----------------LAILDLIKN---- 53 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHH-CCCcceeccCCCCCC-----C----------------HHHHHHhcC----
Confidence 468999999999997 34442 3222222 466542211111110 0 013444433
Q ss_pred CCCCeeEEEECCcc---------hhHHHHHHHcCCCeE
Q 012613 111 QEDSFACIITDPLW---------YFVHAVANDFKLPTI 139 (460)
Q Consensus 111 ~~~~pDlvi~D~~~---------~~~~~vA~~lgIP~v 139 (460)
. ++|+||..+.. ..-...|-..+||++
T Consensus 54 -g-~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 54 -G-EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred -C-CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 3 89999985431 223346888899986
No 212
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=63.33 E-value=71 Score=29.32 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=28.7
Q ss_pred CCceEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 13 NGKRVILFPL--PYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~Il~~~~--~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
++.|++.++. |+.|=..-...||..|++.|++|.++=.
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3455554443 3558888899999999999999998844
No 213
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=63.02 E-value=36 Score=34.04 Aligned_cols=107 Identities=8% Similarity=0.121 Sum_probs=59.5
Q ss_pred eEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcc
Q 012613 16 RVILFPLP-YQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCV 94 (460)
Q Consensus 16 ~Il~~~~~-~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
+|++.... +.|-..-...|++.|+++|++|..+-+....... .++..-.+.+.... +.. ....
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~------~~~~~~~g~~~~~l---d~~-------~~~~ 68 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDP------AYHTAATGRPSRNL---DSW-------MMGE 68 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccH------HHHHHHhCCCcccC---Cce-------eCCH
Confidence 45555444 4589999999999999999999988663111000 00000001110000 000 0011
Q ss_pred hhHHHHHHHhhccCCCCCCCeeEEEECCc------------chhHHHHHHHcCCCeEEEeCcc
Q 012613 95 VPFWDCLVKLTSISNVQEDSFACIITDPL------------WYFVHAVANDFKLPTIILQTSS 145 (460)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~~pDlvi~D~~------------~~~~~~vA~~lgIP~v~~~~~~ 145 (460)
..+.+.++.+.. +.|++|++.. ......+|+.++.|++.+....
T Consensus 69 ~~v~~~~~~~~~-------~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 69 ELVRALFARAAQ-------GADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred HHHHHHHHHhcc-------cCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 233444445433 6799887443 1235689999999999997643
No 214
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=62.84 E-value=25 Score=33.14 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=31.1
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 20 FPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 20 ~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
++.|+.|-.--.+.||++|++||..|-+++-.+..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 56889999999999999999999999999987444
No 215
>PRK05920 aromatic acid decarboxylase; Validated
Probab=62.66 E-value=13 Score=32.59 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=31.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
.+||++.-.|+. ...=...+.++|.+.||+|.++.++.
T Consensus 3 ~krIllgITGsi-aa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGAS-GAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 477877777764 45789999999999999999999873
No 216
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.14 E-value=14 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=33.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
||++.+.++-.|..-..-++.-|...|++|++..+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 688999999999999999999999999999998875
No 217
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=61.86 E-value=11 Score=35.51 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 11 PRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 11 ~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+++.|+|+++-.|+.| ..+|..|++.||+|+++...
T Consensus 2 ~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 2 DSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 4567999999888765 45778899999999999874
No 218
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=61.76 E-value=11 Score=32.36 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=30.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
+||++.-.|+.|=+ -...+.++|+++|++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChh
Confidence 67888888876555 48999999999999999998873
No 219
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.62 E-value=1.1e+02 Score=26.75 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhc-CCceeeeccChHHhhcCC
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLD-GRGHIVKWAPQQEVLAHP 350 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~vp~~~ll~~~ 350 (460)
++++++|..|.++ ..-+..|.+.|.++.++..... +.+.+-.. .++....--.+...+..+
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~-----------~~l~~l~~~~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE-----------SELTLLAEQGGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC-----------HHHHHHHHcCCEEEEeCCCCHHHhCCc
Confidence 5688888877654 3344555566877666543221 22211111 233333211234456677
Q ss_pred CccceeeccCchhH-----HHhHhcCCceeec--ccccchhhhHHHhhhhheeeEecC--C--ccCHHHHHHHHHHHhcc
Q 012613 351 AVGGFLTHGGWNST-----LESICEGVPMICQ--PYLGDQMVNARYISHVWRLGLHLD--G--NVERREIEIAVRRVMIE 419 (460)
Q Consensus 351 ~~~~~I~HGG~gs~-----~eal~~GvP~v~~--P~~~DQ~~na~~v~~~~G~G~~l~--~--~~~~~~l~~ai~~vl~~ 419 (460)
++ +|..-|...+ .+|-..|+|+-++ |-..| +..-..+.+. ++-+.+. + ..-+..|++.|.+++.+
T Consensus 71 ~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 71 FL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPP 146 (205)
T ss_pred EE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcch
Confidence 76 8888776633 3444578888333 33333 2223333332 3444443 2 34446788888888864
Q ss_pred ccHHHHHHHHHHHHHHHHHh
Q 012613 420 TEGQEMRERILYSKEKAHLC 439 (460)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~ 439 (460)
+. ..+-+.+.++++.+++.
T Consensus 147 ~~-~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 147 SL-GDLATLAATWRDAVKKR 165 (205)
T ss_pred hH-HHHHHHHHHHHHHHHhh
Confidence 22 35666666777766643
No 220
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=61.61 E-value=13 Score=31.76 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=29.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+||++.-.|+. ...-...+.++|.++|++|.++.++
T Consensus 1 k~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 1 KKILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred CEEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEECh
Confidence 46777777764 5556679999999999999999886
No 221
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=61.58 E-value=7.2 Score=32.99 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEEe
Q 012613 27 HINPMLQIASVLYS-KGFSITIIH 49 (460)
Q Consensus 27 H~~p~~~La~~L~~-rGh~V~~~~ 49 (460)
|.....+|+++|.+ +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77888999999988 565554443
No 222
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=60.72 E-value=1.1e+02 Score=30.85 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=65.6
Q ss_pred eeeeccChHH---hhcCCCccceee--ccCch-hHHHhHhcCC----ceeecccccchhhhHHHhhhhheeeEecCCccC
Q 012613 336 HIVKWAPQQE---VLAHPAVGGFLT--HGGWN-STLESICEGV----PMICQPYLGDQMVNARYISHVWRLGLHLDGNVE 405 (460)
Q Consensus 336 ~~~~~vp~~~---ll~~~~~~~~I~--HGG~g-s~~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (460)
++.+.+|+.+ ++..+|+ ++|| .-|+| +..|.++++. |+|+=-+.+ |. +. +.-++.+.. .+
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-~d 434 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-YD 434 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC-CC
Confidence 4557888765 7778888 3333 34888 4459998877 433322221 11 23 334566666 78
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 406 RREIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 406 ~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
.++++++|.++|+... ++=+++.+++.+.++ ......=++.+++.++
T Consensus 435 ~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 435 PVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVS 481 (487)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 9999999999999743 233556666666665 2345555666666553
No 223
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=60.09 E-value=55 Score=29.05 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=27.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEEeC
Q 012613 17 VILFPLPYQGHINPMLQIASVLYSKGFS-ITIIHT 50 (460)
Q Consensus 17 Il~~~~~~~GH~~p~~~La~~L~~rGh~-V~~~~~ 50 (460)
|+|...|..|--.....|.++|+++||. ++.+..
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 5677789999999999999999999986 333333
No 224
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=59.55 E-value=1.1e+02 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=22.6
Q ss_pred ccceeeccCch------hHHHhHhcCCceeeccc
Q 012613 352 VGGFLTHGGWN------STLESICEGVPMICQPY 379 (460)
Q Consensus 352 ~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 379 (460)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 33488888854 77899999999999963
No 225
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=59.30 E-value=1.8e+02 Score=28.23 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCcccch--hhhc--c-CchhHHHhhcCC--ceeeeccChH---HhhcCCCccceeec
Q 012613 289 TEFLEIAWGLANSRVPFLWVVRPGLVREA--EWLE--L-LPTGFVEMLDGR--GHIVKWAPQQ---EVLAHPAVGGFLTH 358 (460)
Q Consensus 289 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~--~~~~--~-l~~~~~~~~~~~--~~~~~~vp~~---~ll~~~~~~~~I~H 358 (460)
.-+..+++++.+.+.++.+.+..+..... .... . .+.+. ...++ +.+..|+||. .||-.||+ .||
T Consensus 195 ~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~--~~~g~l~l~~lPF~~Q~~yD~LLw~cD~-NfV-- 269 (374)
T PF10093_consen 195 AALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDS--WQRGNLTLHVLPFVPQDDYDRLLWACDF-NFV-- 269 (374)
T ss_pred hHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccc--cccCCeEEEECCCCCHHHHHHHHHhCcc-ceE--
Confidence 34677888888777777666655432110 0000 0 01111 11133 3456999975 49999996 333
Q ss_pred cCchhHHHhHhcCCceeec
Q 012613 359 GGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 359 GG~gs~~eal~~GvP~v~~ 377 (460)
=|=-|+.-|..+|+|.|=-
T Consensus 270 RGEDSfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 270 RGEDSFVRAQWAGKPFVWH 288 (374)
T ss_pred ecchHHHHHHHhCCCceEe
Confidence 4677999999999999843
No 226
>PRK14098 glycogen synthase; Provisional
Probab=59.24 E-value=19 Score=36.52 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCceEEEEcCCC------ccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 13 NGKRVILFPLPY------QGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 13 ~~~~Il~~~~~~------~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
+.|||++++.-. .|==...-.|.++|+++||+|.++.|-+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~ 50 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYG 50 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 349999988431 23334567888999999999999999643
No 227
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=58.85 E-value=1e+02 Score=25.42 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=80.4
Q ss_pred EEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccc
Q 012613 275 VIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGG 354 (460)
Q Consensus 275 vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~ 354 (460)
.|-+-+||.+ +-+.++...+.|++++..+-..+-+..+ .|+.+.+ +..-.....++.
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHR--------TPe~m~~-------------ya~~a~~~g~~v 60 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHR--------TPEKMFE-------------YAEEAEERGVKV 60 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccC--------CHHHHHH-------------HHHHHHHCCCeE
Confidence 5677789887 4567788899999999887665554432 4554421 111123344555
Q ss_pred eeeccCchh---HHHhHhcCCceeecccccch---hhhHHHhhhhheeeEecC-----CccCHHHHHHHHHHHhccccHH
Q 012613 355 FLTHGGWNS---TLESICEGVPMICQPYLGDQ---MVNARYISHVWRLGLHLD-----GNVERREIEIAVRRVMIETEGQ 423 (460)
Q Consensus 355 ~I~HGG~gs---~~eal~~GvP~v~~P~~~DQ---~~na~~v~~~~G~G~~l~-----~~~~~~~l~~ai~~vl~~~~~~ 423 (460)
+|.-.|.-- =+-|...-+|+|++|....- -+--.-++. +-.|+-+. ...|+.-+...|-. +.| +
T Consensus 61 iIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa-~~d---~ 135 (162)
T COG0041 61 IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILA-IKD---P 135 (162)
T ss_pred EEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHc-CCC---H
Confidence 666555210 11244557999999987322 233334444 44444332 24555555555533 345 6
Q ss_pred HHHHHHHHHHHHHHHh
Q 012613 424 EMRERILYSKEKAHLC 439 (460)
Q Consensus 424 ~~~~~a~~~~~~~~~~ 439 (460)
.++++.+++++..++.
T Consensus 136 ~l~~kl~~~r~~~~~~ 151 (162)
T COG0041 136 ELAEKLAEFREAQTEE 151 (162)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999998853
No 228
>PRK11519 tyrosine kinase; Provisional
Probab=58.30 E-value=68 Score=34.34 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=66.5
Q ss_pred CCceEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC------CCCCeEEE-----Ec-----C---CC
Q 012613 13 NGKRVILFPL--PYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNAC------NYPHFEFH-----SI-----S---AS 71 (460)
Q Consensus 13 ~~~~Il~~~~--~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~------~~~gi~~~-----~~-----~---~~ 71 (460)
++.+++++++ |+.|-..-...||..|+..|++|.++-.....+... ...|+.-. .+ + ++
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 3456666554 577999999999999999999999985542221110 00111100 00 0 00
Q ss_pred ---CCCCccCcccHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcc----hhHHHHHHHcCCCeEEEeC
Q 012613 72 ---LSETEASTEDMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW----YFVHAVANDFKLPTIILQT 143 (460)
Q Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~----~~~~~vA~~lgIP~v~~~~ 143 (460)
++.+ ....+..+++ ....+.++++.++. ++|+||.|.-. .-+..++...+...+++..
T Consensus 604 l~~lp~g-~~~~~~~ell------~s~~~~~ll~~l~~-------~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~ 668 (719)
T PRK11519 604 FDLIPRG-QVPPNPSELL------MSERFAELVNWASK-------NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARY 668 (719)
T ss_pred EEEEeCC-CCCCCHHHHh------hHHHHHHHHHHHHh-------cCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeC
Confidence 0000 0111222222 12346677888877 89999999654 2345678888877666543
No 229
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=57.90 E-value=21 Score=31.55 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=36.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++.+|++.+.++-.|-....-++..|..+|++|++++..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 468999999999999999999999999999999999875
No 230
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=57.69 E-value=8.5 Score=32.09 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=25.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
||.++..|..|+ ++|..|+++||+|++.+..
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEecc
Confidence 466666666554 7999999999999999886
No 231
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=57.58 E-value=56 Score=32.67 Aligned_cols=106 Identities=11% Similarity=0.198 Sum_probs=59.3
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcch
Q 012613 17 VILFPLP-YQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVV 95 (460)
Q Consensus 17 Il~~~~~-~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
|++.... ..|-..-...|++.|+++|++|..+-+..... . +. ++..-.+.+.. +... + ..-..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~---D-~~--~~~~~~g~~~~-----~ld~----~-~~~~~ 65 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYI---D-PM--FHTQATGRPSR-----NLDS----F-FMSEA 65 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCC---C-HH--HHHHHhCCchh-----hCCc----c-cCCHH
Confidence 4445444 35889999999999999999999986531100 0 00 00000011100 0000 0 01122
Q ss_pred hHHHHHHHhhccCCCCCCCeeEEEECCcc------------hhHHHHHHHcCCCeEEEeCcc
Q 012613 96 PFWDCLVKLTSISNVQEDSFACIITDPLW------------YFVHAVANDFKLPTIILQTSS 145 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~pDlvi~D~~~------------~~~~~vA~~lgIP~v~~~~~~ 145 (460)
.+.+.+..+.. +.|++|++... .....+|+.++.|++.+....
T Consensus 66 ~i~~~~~~~~~-------~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 66 QIQECFHRHSK-------GTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred HHHHHHHHhcc-------cCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 23344444433 67999966541 236689999999999997655
No 232
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=57.58 E-value=22 Score=30.54 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=35.2
Q ss_pred ceEEEEc---CCC-ccCHHH-HHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCeEEEEcC
Q 012613 15 KRVILFP---LPY-QGHINP-MLQIASVLYSKGFSITIIHTNLNP-LNACNYPHFEFHSIS 69 (460)
Q Consensus 15 ~~Il~~~---~~~-~GH~~p-~~~La~~L~~rGh~V~~~~~~~~~-~~~~~~~gi~~~~~~ 69 (460)
+||.++. .|+ +|=+-- .-.|+..|+++||+|++.+..... .....+.|++.+.+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 4555554 333 243433 346778888889999998875444 334455788888887
No 233
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=57.46 E-value=15 Score=35.88 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=25.5
Q ss_pred eEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012613 16 RVILFP-LPYQGHINPMLQIASVLYSKGFSITII 48 (460)
Q Consensus 16 ~Il~~~-~~~~GH~~p~~~La~~L~~rGh~V~~~ 48 (460)
+|++.. ..+.|-..-.+.|+++|++||++|--+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 344443 335599999999999999999998753
No 234
>PLN02929 NADH kinase
Probab=56.51 E-value=16 Score=34.09 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCCccceeeccCchhHHHhHh---cCCceeecccccc------hhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 349 HPAVGGFLTHGGWNSTLESIC---EGVPMICQPYLGD------QMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 349 ~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D------Q~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
.+|+ +|+-||-||++.|.+ .++|++++-.... +.+|.-. +. .-.|--. ..+.+++.++|.+++++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~--~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLC--AATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCccccc--cCCHHHHHHHHHHHHcC
Confidence 4566 999999999999855 4789998866421 2223211 11 1234222 46788999999999986
No 235
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=56.42 E-value=57 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=31.8
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 012613 20 FPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPL 55 (460)
Q Consensus 20 ~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~ 55 (460)
++.|+.|-.--...|++.|.++|++|.+++-.+...
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 568899999999999999999999999999875544
No 236
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=56.12 E-value=86 Score=28.69 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=39.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLS 73 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 73 (460)
.+|||+++.+++...-. .++++|.+.|++|.++..............+..+.+|-+..
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCC
Confidence 46899999998875443 55788888999999887642211112234677778887653
No 237
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=55.95 E-value=53 Score=31.40 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGF-SITIIHT 50 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh-~V~~~~~ 50 (460)
++.+|+++..|+.| -.+|+.|++.|+ +++++=.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 36789999998876 678999999998 5555433
No 238
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=55.64 E-value=49 Score=32.91 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=53.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhc
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKC 93 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
++|++++..+ .....+++-|.+.|.+|..+......+.. .. +..+.....+
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~--------~~----~~~~~~~~~D------------ 361 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLL--------QK----LPVETVVIGD------------ 361 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHH--------Hh----CCcCcEEeCC------------
Confidence 6788777533 36688899999999999887775332211 00 1111000011
Q ss_pred chhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEe
Q 012613 94 VVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQ 142 (460)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~ 142 (460)
+.++-+.+++ . ++|++|.... ...+|+++|||++.+.
T Consensus 362 ---~~~l~~~i~~-----~-~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 362 ---LEDLEDLACA-----A-GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred ---HHHHHHHHhh-----c-CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 1222222323 3 7999999864 4679999999999864
No 239
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=55.56 E-value=1.7e+02 Score=26.82 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=29.6
Q ss_pred eccChHHhhcCCCccceeeccCchhHHHhHhcCCceeec
Q 012613 339 KWAPQQEVLAHPAVGGFLTHGGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 339 ~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 377 (460)
++=|+-+.|+.+|. .++|--..+...||+..|+|+-++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 44588999988886 344555678889999999999776
No 240
>PRK13973 thymidylate kinase; Provisional
Probab=55.55 E-value=76 Score=27.91 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+++-|+|-...+.|--.-...|++.|.++|+.|....-|
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p 40 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREP 40 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 467788888999999999999999999999999877655
No 241
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=55.53 E-value=1.9e+02 Score=28.71 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.1
Q ss_pred CeeEEEECCcchhHHHHHHHcCCCeEEEe
Q 012613 114 SFACIITDPLWYFVHAVANDFKLPTIILQ 142 (460)
Q Consensus 114 ~pDlvi~D~~~~~~~~vA~~lgIP~v~~~ 142 (460)
+||++|.+.. ...+|+++|||++.+.
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 8999999975 4679999999998764
No 242
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.44 E-value=37 Score=28.47 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=26.8
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 21 PLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 21 ~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+-|+.|-..-...||..|+++|++|.++=..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3457799999999999999999999998664
No 243
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=55.23 E-value=40 Score=28.62 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC-C-----CCCCCCCCeEEEEcCCCCCCCccCcccHHHHH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLN-P-----LNACNYPHFEFHSISASLSETEASTEDMVAIL 86 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~-~-----~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 86 (460)
++..|.+++..+.|-....+.+|-+-+.+|.+|.++----. . ......+++++.....++...... ...-
T Consensus 2 ~~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~---~~~~- 77 (172)
T PF02572_consen 2 ERGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNE---EEED- 77 (172)
T ss_dssp ----EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GGG---HHHH-
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCC---cHHH-
Confidence 35678899999999999999998888888999888754312 1 011233568887777655433211 1111
Q ss_pred HHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcc
Q 012613 87 IALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW 124 (460)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~ 124 (460)
...+...+....+.+.. . .+|+||.|-..
T Consensus 78 ---~~~~~~~~~~a~~~i~~-----~-~~dlvILDEi~ 106 (172)
T PF02572_consen 78 ---RAAAREGLEEAKEAISS-----G-EYDLVILDEIN 106 (172)
T ss_dssp ---HHHHHHHHHHHHHHTT------T-T-SEEEEETHH
T ss_pred ---HHHHHHHHHHHHHHHhC-----C-CCCEEEEcchH
Confidence 23333444444444433 3 79999999765
No 244
>PRK00784 cobyric acid synthase; Provisional
Probab=54.65 E-value=95 Score=31.45 Aligned_cols=35 Identities=9% Similarity=0.245 Sum_probs=28.4
Q ss_pred eEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 16 RVILFPLP-YQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 16 ~Il~~~~~-~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
.|.+.... ..|-..-...|++.|+++|++|..+-+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45555454 359999999999999999999998766
No 245
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=54.59 E-value=71 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred ccceeeccCch------hHHHhHhcCCceeeccc
Q 012613 352 VGGFLTHGGWN------STLESICEGVPMICQPY 379 (460)
Q Consensus 352 ~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 379 (460)
.+++++++|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33477777744 67889999999999964
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.89 E-value=21 Score=32.56 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=35.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.+..++|+..++.|-..=..+++.+|.++|+.|+|++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 567899999999999999999999999889999998875
No 247
>PLN02939 transferase, transferring glycosyl groups
Probab=53.33 E-value=26 Score=38.12 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCC------ccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 12 RNGKRVILFPLPY------QGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 12 ~~~~~Il~~~~~~------~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
..+|||++++.-. .|=-...-.|.++|++.||+|.+++|.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 3589999997431 13334456789999999999999999754
No 248
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.32 E-value=64 Score=31.90 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=35.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
+..|+++..++.|-..-...||..|..+|+.|.+++....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4567888888999999999999999999999999988643
No 249
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=53.29 E-value=22 Score=30.32 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=38.4
Q ss_pred CCccceeeccCchhHHHhHhcCCceeeccccc-----------------------chhhhHHHhhhhheeeEecCCccCH
Q 012613 350 PAVGGFLTHGGWNSTLESICEGVPMICQPYLG-----------------------DQMVNARYISHVWRLGLHLDGNVER 406 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~-----------------------DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (460)
..++.+|+.||...+..... ++|+|-+|..+ +.......+.+-+|+-+....--+.
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~ 111 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSE 111 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSH
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCH
Confidence 44444999999999888887 99999999752 2223344454433333322223456
Q ss_pred HHHHHHHHHHhcc
Q 012613 407 REIEIAVRRVMIE 419 (460)
Q Consensus 407 ~~l~~ai~~vl~~ 419 (460)
+++...|.++..+
T Consensus 112 ~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 112 EEIEAAIKQAKAE 124 (176)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 6777777776543
No 250
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=53.15 E-value=1.1e+02 Score=25.14 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 17 VILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 17 Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|++...++.|-...+..++..|..+|++|.++...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 67777888899999999999999999999998765
No 251
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.94 E-value=40 Score=32.48 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=35.8
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
+.-|+|+..-+.|-...+-.+|..++++|+.+-+++.....
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 45678888889999999999999999999999999987443
No 252
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=52.50 E-value=36 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=21.8
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 19 LFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 19 ~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+++..+.|-+ -..||++|.++||+|+++...
T Consensus 19 ~itN~SSG~i--G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQL--GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHH--HHHHHHHHHhCCCEEEEEECc
Confidence 3444444433 367889999999999998754
No 253
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.44 E-value=2.2e+02 Score=27.25 Aligned_cols=61 Identities=23% Similarity=0.209 Sum_probs=49.3
Q ss_pred cCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCeEEEEcCC
Q 012613 10 LPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP--LNACNYPHFEFHSISA 70 (460)
Q Consensus 10 ~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~--~~~~~~~gi~~~~~~~ 70 (460)
...+++|++++-.|..||--.|--=|..|+..|.+|.+++--... ...-+.++|+++.++.
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPN 70 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCC
Confidence 345689999999999999999999999999999999998764332 2233468999999983
No 254
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=52.13 E-value=22 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 11 PRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 11 ~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.-++++|+++..|.. ....++.|.+.||+|+++.++
T Consensus 10 ~l~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 346788888877653 377899999999999999754
No 255
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=52.05 E-value=27 Score=28.19 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=34.7
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+++|++-+.++-+|-.--.-++..|.+.|++|..+...
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~ 38 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVL 38 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCC
Confidence 46899999999999999999999999999999998775
No 256
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=51.96 E-value=73 Score=28.00 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
+++|-|+|=...+.|-..-...|++.|.++|.+|++..-|..
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~ 42 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG 42 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 356778888888999999999999999999999999777643
No 257
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=51.35 E-value=23 Score=35.36 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=39.8
Q ss_pred hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhccc
Q 012613 363 STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMIET 420 (460)
Q Consensus 363 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~ 420 (460)
++.||+++|+|+|+.= +..=+.-|+. .--|...+. .-....+++++.++..|+
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRDP 434 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcCH
Confidence 7899999999999874 4444566666 466777777 333447999999999993
No 258
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=50.59 E-value=22 Score=34.71 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
+++||++.-.|+. ...-...++++|.+.|++|.++.++.
T Consensus 2 ~~k~IllgiTGSi-aa~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 2 ENKKILLGVTGGI-AAYKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCCEEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4678888888874 55668999999999999999998863
No 259
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=50.49 E-value=18 Score=30.97 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=27.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
||++.-.|+.|-+.- ..+.++|+++|++|.++.++
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~ 35 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISD 35 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECc
Confidence 355555666555554 88999999999999999997
No 260
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=50.48 E-value=1.5e+02 Score=29.78 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.+++++++..+ .-.+.+++.|.+.|-+|..+.+........ .. +......-...
T Consensus 325 ~Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~--~~-------------------l~~~~~~~~~v 378 (456)
T TIGR01283 325 KGKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDY--AR-------------------IRELMGEGTVM 378 (456)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHH--HH-------------------HHHHcCCCeEE
Confidence 36777766544 234678888999999998876542111000 00 00000000000
Q ss_pred c-chhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEE
Q 012613 93 C-VVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIIL 141 (460)
Q Consensus 93 ~-~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~ 141 (460)
. ...+.++.+.+++ . +||++|... ....+|+++|||++.+
T Consensus 379 ~~~~d~~e~~~~i~~-----~-~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 379 LDDANPRELLKLLLE-----Y-KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred EeCCCHHHHHHHHhh-----c-CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 0 1133344444444 4 899999873 3466888999999875
No 261
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.40 E-value=39 Score=31.32 Aligned_cols=73 Identities=15% Similarity=0.314 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHH
Q 012613 286 IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTL 365 (460)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~ 365 (460)
......+.+.+|+.+...+.||...++.. -. ++.++++...+-+++.. ||=.+-..+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------a~--------rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYG-----------AN--------RLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------HH--------HhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 35667888999999999999999887641 11 34444555555556665 66666666666
Q ss_pred HhHhc--CCceeeccc
Q 012613 366 ESICE--GVPMICQPY 379 (460)
Q Consensus 366 eal~~--GvP~v~~P~ 379 (460)
-+++. |++.+-=|+
T Consensus 105 ~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 105 LALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHhcCceEEECcc
Confidence 66543 555555554
No 262
>PRK10867 signal recognition particle protein; Provisional
Probab=50.31 E-value=79 Score=31.37 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=35.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSK-GFSITIIHTNLNP 54 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~V~~~~~~~~~ 54 (460)
+..|+++..++.|-..-...||..|+.+ |+.|.++......
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 4567778788889999999999999999 9999999886443
No 263
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=50.31 E-value=64 Score=27.43 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=59.9
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCC
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHP 350 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~ 350 (460)
.++.+-.+.+|.++ +.+++.++..|.+++..-+... -...+.+ ....+.+-.++|+.+
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~---------~~~~~~~------~~~~~~~l~ell~~a 92 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK---------PEEGADE------FGVEYVSLDELLAQA 92 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH---------HHHHHHH------TTEEESSHHHHHHH-
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC---------hhhhccc------ccceeeehhhhcchh
Confidence 36789999999887 5666667777888777765432 0011100 234677888999999
Q ss_pred CccceeeccCchhHHHhHhcCCceeeccccc--chhhhHHHhhhhheeeEec---CC--ccCHHHHHHHHH
Q 012613 351 AVGGFLTHGGWNSTLESICEGVPMICQPYLG--DQMVNARYISHVWRLGLHL---DG--NVERREIEIAVR 414 (460)
Q Consensus 351 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l---~~--~~~~~~l~~ai~ 414 (460)
|+ ++.|. |... ....|++.+.. ++-|..+ .+ -++.+.|.++++
T Consensus 93 Di--v~~~~------------------plt~~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 93 DI--VSLHL------------------PLTPETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SE--EEE-S------------------SSSTTTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hh--hhhhh------------------ccccccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 97 66555 4433 45667777777 6655333 22 466666665554
No 264
>PRK06849 hypothetical protein; Provisional
Probab=50.22 E-value=32 Score=33.58 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++|+|++..... ...+.+|+.|.++||+|+++...
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 478888875433 36899999999999999998764
No 265
>PLN02470 acetolactate synthase
Probab=49.99 E-value=67 Score=33.39 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=53.0
Q ss_pred EccCcccCCH--HHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeecc-ChHHh-------hc
Q 012613 279 SFGSVVNIDE--TEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWA-PQQEV-------LA 348 (460)
Q Consensus 279 s~GS~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v-p~~~l-------l~ 348 (460)
+|||....+. ...+.+++.|++.|.+.++-+.+..... +-+.+.+ ..++.++.-- .+.+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 4677655222 3356788999999999988887754211 1111210 0112222110 11111 11
Q ss_pred CCCccceeeccCch------hHHHhHhcCCceeeccc
Q 012613 349 HPAVGGFLTHGGWN------STLESICEGVPMICQPY 379 (460)
Q Consensus 349 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 379 (460)
...++++++|.|-| .+.+|...++|+|++.-
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 22455588998854 78899999999999953
No 266
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=49.80 E-value=24 Score=30.38 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=30.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYS-KGFSITIIHTNL 52 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~-rGh~V~~~~~~~ 52 (460)
+||++.-.|+.| .+=...++++|.+ .||+|.++.++.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 678888888766 6669999999999 499999999873
No 267
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=49.72 E-value=48 Score=30.82 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.++.+|.+...|+.|--.-.-.|.++|..+||.|-++.-.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 4577899999999999999999999999999999998765
No 268
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=49.45 E-value=28 Score=31.83 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=32.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+|.|..=|+.|-..-...||..|+++|++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788888788899999999999999999999887443
No 269
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=49.28 E-value=29 Score=31.77 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=31.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|+|.++.=|+.|-..-...||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 678888778889999999999999999999998743
No 270
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=49.22 E-value=36 Score=28.41 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=25.3
Q ss_pred eEEEEEccCcccCCHHHHHHHHHHHhhCCC
Q 012613 274 SVIYVSFGSVVNIDETEFLEIAWGLANSRV 303 (460)
Q Consensus 274 ~vI~vs~GS~~~~~~~~~~~~~~al~~~~~ 303 (460)
..+|+++||........++..+.++.+.+.
T Consensus 2 ~~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 2 TRVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 378999999988777788899999988764
No 271
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=49.11 E-value=11 Score=32.93 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=24.7
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCcc
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSS 145 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~ 145 (460)
.||+|| +|+.. ..+..=|.++|||+|.+..+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 577766 67766 556677999999999997653
No 272
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=49.06 E-value=27 Score=32.85 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=31.3
Q ss_pred ceEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 15 KRVILFP-LPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 15 ~~Il~~~-~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
||++|+. =|+.|-..-..++|..++++|++|.++++....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 4565555 556699999999999999999999999987443
No 273
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=48.96 E-value=1.8e+02 Score=28.59 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=51.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHH-HH
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIAL-NA 91 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 91 (460)
.+++++++..+. + ...+++.|.+.|.+|..+.......... .. .......- ..
T Consensus 286 ~gkrv~i~~~~~--~---~~~la~~l~elGm~v~~~~~~~~~~~~~--~~-------------------~~~~~~~~~~v 339 (410)
T cd01968 286 EGKKAALYTGGV--K---SWSLVSALQDLGMEVVATGTQKGTKEDY--ER-------------------IKELLGEGTVI 339 (410)
T ss_pred CCCEEEEEcCCc--h---HHHHHHHHHHCCCEEEEEecccCCHHHH--HH-------------------HHHHhCCCcEE
Confidence 367787765443 3 3678888888999998886542211000 00 00000000 00
Q ss_pred hcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEE
Q 012613 92 KCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIIL 141 (460)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~ 141 (460)
.......++.+.++. . +||++|.... ...+|+++|||++..
T Consensus 340 ~~~~~~~e~~~~i~~-----~-~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 340 VDDANPRELKKLLKE-----K-KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred EeCCCHHHHHHHHhh-----c-CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 001122233344444 3 8999999954 457899999999854
No 274
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=48.94 E-value=10 Score=32.89 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=24.9
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCcc
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSS 145 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~ 145 (460)
.||+|| +|+.. ..+..=|.++|||+|.+..+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 578766 67766 566778999999999987653
No 275
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.64 E-value=40 Score=26.72 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=29.3
Q ss_pred ceEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLP-YQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~-~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|-++++..| ..-.+...+-+...|.++|++|++.+++
T Consensus 4 kvlv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 4 KVLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred eEEEEecCCCCCccchHHHHHHHHhhccCccEEEecCH
Confidence 445555555 3367788899999999999999999997
No 276
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=48.25 E-value=59 Score=32.25 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.||||++..+++-| +|+++|++.++-..+++.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 359999999999766 7899999888655554544
No 277
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=48.18 E-value=12 Score=33.72 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=25.2
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCccH
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSSV 146 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~~ 146 (460)
.||+|| +|+.. ..+..=|.++|||+|.++.+..
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCC
Confidence 577765 77776 5566779999999999986633
No 278
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=48.03 E-value=34 Score=31.91 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=33.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+|++..=|+.|-..-...||..|+++|++|.++=-.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 6799999999999999999999999999999988654
No 279
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=48.02 E-value=1.4e+02 Score=24.90 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=67.3
Q ss_pred EEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceee
Q 012613 278 VSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLT 357 (460)
Q Consensus 278 vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~ 357 (460)
|-+||.+ +....+++...|+..|..+-..+-+.. ..|+.+.+ |+.+.+ =.+.++ ||.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~SaH--------Rtp~~~~~----------~~~~a~-~~g~~v--iIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSAH--------RTPELMLE----------YAKEAE-ERGIKV--IIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECcc--------cCHHHHHH----------HHHHHH-HCCCeE--EEE
Confidence 3356555 456777788888888877655554432 24554421 111000 012334 887
Q ss_pred ccCchhHHH---hHhcCCceeecccccc--hhhhH-HHhhh-hhe--ee-EecCCccCHHHHHHHHHHHhccccHHHHHH
Q 012613 358 HGGWNSTLE---SICEGVPMICQPYLGD--QMVNA-RYISH-VWR--LG-LHLDGNVERREIEIAVRRVMIETEGQEMRE 427 (460)
Q Consensus 358 HGG~gs~~e---al~~GvP~v~~P~~~D--Q~~na-~~v~~-~~G--~G-~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~ 427 (460)
-.|...-+- |-..-+|+|.+|.... ....+ --+.. --| ++ +.++...++..+...|- -+.| ..+++
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl-~~~d---~~l~~ 135 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQIL-GIKD---PELAE 135 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHH-cCCC---HHHHH
Confidence 777543222 2334689999997532 11111 11112 014 22 22222445555555552 2345 57788
Q ss_pred HHHHHHHHHHH
Q 012613 428 RILYSKEKAHL 438 (460)
Q Consensus 428 ~a~~~~~~~~~ 438 (460)
+.+.+++++++
T Consensus 136 kl~~~r~~~~~ 146 (156)
T TIGR01162 136 KLKEYRENQKE 146 (156)
T ss_pred HHHHHHHHHHH
Confidence 88888777763
No 280
>PRK06270 homoserine dehydrogenase; Provisional
Probab=47.72 E-value=1.3e+02 Score=28.86 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=37.7
Q ss_pred ChHHhhcCCCccceee------ccC---chhHHHhHhcCCceeec---ccccchhhhHHHhhhhheeeEecC
Q 012613 342 PQQEVLAHPAVGGFLT------HGG---WNSTLESICEGVPMICQ---PYLGDQMVNARYISHVWRLGLHLD 401 (460)
Q Consensus 342 p~~~ll~~~~~~~~I~------HGG---~gs~~eal~~GvP~v~~---P~~~DQ~~na~~v~~~~G~G~~l~ 401 (460)
+..+++..+++..+|- |+| ..-+.+||.+|+++|+. |+...-..-.+..++ .|......
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEEe
Confidence 5567786655555766 443 45668999999999994 775433344444445 37766554
No 281
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=47.11 E-value=1.6e+02 Score=24.10 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=21.0
Q ss_pred ceeeccCch------hHHHhHhcCCceeeccc
Q 012613 354 GFLTHGGWN------STLESICEGVPMICQPY 379 (460)
Q Consensus 354 ~~I~HGG~g------s~~eal~~GvP~v~~P~ 379 (460)
++++|+|-| .+.+|...++|+|++..
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 488887644 77889999999999964
No 282
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.77 E-value=35 Score=32.05 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=37.1
Q ss_pred cCCCccceeeccCchhHHHhHhc----CCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 348 AHPAVGGFLTHGGWNSTLESICE----GVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
..+++ +|+=||=||++.|.+. ++|++++-.. .+|-- ..++.+++.+++.+++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFL--t~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFL--TEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCccc--ccCCHHHHHHHHHHHHcC
Confidence 34666 9999999999999774 7898887531 11111 145667777777777765
No 283
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=46.64 E-value=2e+02 Score=25.01 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=85.5
Q ss_pred eEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCcc
Q 012613 274 SVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVG 353 (460)
Q Consensus 274 ~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~ 353 (460)
+..++.-..... ...+=..+.+.+.+.+..+++..+. +.-|.+.|.++.+.+++ + =||++
T Consensus 52 pt~~~~~k~~~~-r~~~d~~l~~~l~~~~~dlvvLAGy--------MrIL~~~fl~~~~grIl--N--------IHPSL- 111 (200)
T COG0299 52 PTVVLDRKEFPS-REAFDRALVEALDEYGPDLVVLAGY--------MRILGPEFLSRFEGRIL--N--------IHPSL- 111 (200)
T ss_pred CEEEeccccCCC-HHHHHHHHHHHHHhcCCCEEEEcch--------HHHcCHHHHHHhhcceE--e--------cCccc-
Confidence 344444433331 3345556999999998888877664 34466777655554322 1 26887
Q ss_pred ceeeccCchhHHHhHhcCCceeeccccc-c-hhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhccccHHHHHHHHHH
Q 012613 354 GFLTHGGWNSTLESICEGVPMICQPYLG-D-QMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETEGQEMRERILY 431 (460)
Q Consensus 354 ~~I~HGG~gs~~eal~~GvP~v~~P~~~-D-Q~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 431 (460)
.=.++|..+..+|+.+|+..-++-++. | ..+-.-.+.. ..+-+...-|.|.|.+.|.+.-. .-|-+..+.
T Consensus 112 -LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~Dt~etl~~RV~~~Eh----~lyp~~v~~ 183 (200)
T COG0299 112 -LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPGDTAETLEARVLEQEH----RLYPLAVKL 183 (200)
T ss_pred -ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHH
Confidence 888999999999999999998887653 2 2333333332 22223333488999999987544 477777777
Q ss_pred HHHH
Q 012613 432 SKEK 435 (460)
Q Consensus 432 ~~~~ 435 (460)
+.+.
T Consensus 184 ~~~g 187 (200)
T COG0299 184 LAEG 187 (200)
T ss_pred HHhC
Confidence 7664
No 284
>PRK05114 hypothetical protein; Provisional
Probab=46.20 E-value=69 Score=21.33 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 425 MRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
-.+.++++.+.+. +|-|+..|+..+.+.|+
T Consensus 13 QQ~AVErIq~LMa----qGmSsgEAI~~VA~eiR 42 (59)
T PRK05114 13 QQKAVERIQELMA----QGMSSGEAIALVAEELR 42 (59)
T ss_pred HHHHHHHHHHHHH----ccccHHHHHHHHHHHHH
Confidence 3455555555555 56666666666555553
No 285
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=46.18 E-value=20 Score=29.26 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=47.2
Q ss_pred chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHh
Q 012613 361 WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVM 417 (460)
Q Consensus 361 ~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl 417 (460)
=-||.|-+.---|+|+=.-..=++++...+.+ |+-..+.+ .++.++|..++..+-
T Consensus 37 RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie 92 (156)
T COG1327 37 RFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIE 92 (156)
T ss_pred ccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34888988888888888888888999999987 88888888 899999999998885
No 286
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.09 E-value=45 Score=31.07 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=38.8
Q ss_pred HhhcCCCccceeeccCchhHHHhHh----cCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESIC----EGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
.+...+++ +|+=||=||++.++. .++|++++-+.. +|-- .+++++++.+++.+++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGFL--t~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR--------------LGFL--ATVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC--------------CCcc--cccCHHHHHHHHHHHHcC
Confidence 33345677 999999999999987 378888775311 1110 145677777788777766
No 287
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=45.96 E-value=17 Score=32.90 Aligned_cols=24 Identities=13% Similarity=0.294 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 29 NPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 29 ~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
.-.-.|+++|+++||+|++++|.+
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 456789999999999999999874
No 288
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=45.47 E-value=31 Score=29.43 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=25.7
Q ss_pred HHHHhhccCCCCCCCeeEEEECCcchh--HHHHHHHcCCCeEEEe
Q 012613 100 CLVKLTSISNVQEDSFACIITDPLWYF--VHAVANDFKLPTIILQ 142 (460)
Q Consensus 100 ~l~~l~~~~~~~~~~pDlvi~D~~~~~--~~~vA~~lgIP~v~~~ 142 (460)
-+|.+.+ . +||+||+...... ....-+..|||++.+.
T Consensus 61 n~E~ll~-----l-~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 61 NVELIVA-----L-KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CHHHHhc-----c-CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 4677766 4 9999998654432 3344577899998875
No 289
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.43 E-value=67 Score=31.54 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=36.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
+-.|+++..-+.|-..-+-.||+.|..+|+.|.+++.....
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 56788888889999999999999999999999999987444
No 290
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.27 E-value=41 Score=27.74 Aligned_cols=39 Identities=36% Similarity=0.508 Sum_probs=31.2
Q ss_pred CCceEEEEcCC-------CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLP-------YQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~-------~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+++|++++..| ++.|+--++.=|++|++.|.++.++.+-
T Consensus 42 ~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 42 KGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred CCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 45666666543 6789999999999999999998887664
No 291
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=45.14 E-value=76 Score=20.52 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHh
Q 012613 425 MRERILYSKEKAHLCLKPGGSSYQSLERLIDHIL 458 (460)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (460)
-.+.++++.+.+. +|-|+..|+..+.+.|+
T Consensus 13 QQ~AvE~Iq~LMa----qGmSsgEAI~~VA~~iR 42 (51)
T PF03701_consen 13 QQQAVERIQELMA----QGMSSGEAIAIVAQEIR 42 (51)
T ss_pred HHHHHHHHHHHHH----hcccHHHHHHHHHHHHH
Confidence 3455566666666 66667777666666554
No 292
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=45.00 E-value=1.4e+02 Score=30.21 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.+++++++..+ .-.+.+++.|.+.|.+|..+.......... ..+ ...+.+.. ...
T Consensus 323 ~Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~--~~l-----~~~~~~~~-------------~v~ 377 (475)
T PRK14478 323 EGKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDK--ERI-----KELMGPDA-------------HMI 377 (475)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHH--HHH-----HHHcCCCc-------------EEE
Confidence 36788776544 235578888889999999887642211100 000 00000000 000
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEE
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTII 140 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~ 140 (460)
.+....++.+.+.+ . +||++|... ....+|+++|||++.
T Consensus 378 ~d~~~~e~~~~i~~-----~-~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 378 DDANPRELYKMLKE-----A-KADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred eCCCHHHHHHHHhh-----c-CCCEEEecC---chhhhhhhcCCCEEE
Confidence 01112333334433 3 899999983 456799999999984
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.88 E-value=89 Score=30.98 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=34.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLY-SKGFSITIIHTNLNP 54 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~-~rGh~V~~~~~~~~~ 54 (460)
+..|+++..++.|-..-...||..|. ++|+.|.++......
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 44577788889999999999999997 579999999886433
No 294
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.57 E-value=2.2e+02 Score=28.25 Aligned_cols=27 Identities=7% Similarity=0.269 Sum_probs=22.2
Q ss_pred CeeEEEECCcchhHHHHHHHcCCCeEEEeC
Q 012613 114 SFACIITDPLWYFVHAVANDFKLPTIILQT 143 (460)
Q Consensus 114 ~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~ 143 (460)
+||++|.+.. ...+|+++|||++.++.
T Consensus 370 ~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 8999999973 44578999999998754
No 295
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=44.55 E-value=27 Score=30.56 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=31.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
=|++..+|+.|-..-...||++|.+++|+|..++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 356667889999999999999999999998877664
No 296
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=44.46 E-value=2e+02 Score=25.32 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=56.0
Q ss_pred chhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccC
Q 012613 263 CISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAP 342 (460)
Q Consensus 263 l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp 342 (460)
+.+|+... .+++.|+-+-|...-.....+...++|+++|..+.-.-.... -.+.+.
T Consensus 24 i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~---------~~~~Ie-------------- 79 (224)
T COG3340 24 IANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP---------PLAAIE-------------- 79 (224)
T ss_pred HHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC---------CHHHHH--------------
Confidence 34555542 568999999888775666788899999999876553322111 112221
Q ss_pred hHHhhcCCCccceeeccCchh---------------HHHhHhcCCceeeccc
Q 012613 343 QQEVLAHPAVGGFLTHGGWNS---------------TLESICEGVPMICQPY 379 (460)
Q Consensus 343 ~~~ll~~~~~~~~I~HGG~gs---------------~~eal~~GvP~v~~P~ 379 (460)
..|...+ +|.=||-|| +.|.+.+|+|-+++--
T Consensus 80 --~~l~~~d---~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SA 126 (224)
T COG3340 80 --NKLMKAD---IIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSA 126 (224)
T ss_pred --Hhhhhcc---EEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEecc
Confidence 1223344 555566565 4578999999998864
No 297
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=44.37 E-value=32 Score=33.70 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
+++||++.-.|+. ...=...+.++|.+.|++|.++.++.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4678888888874 56678999999999999999998873
No 298
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=44.18 E-value=27 Score=32.54 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=25.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|||+++..|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888877765 5678889999999999886
No 299
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=44.04 E-value=1e+02 Score=30.51 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.0
Q ss_pred CeeEEEECCcchhHHHHHHHcCCCeEEE
Q 012613 114 SFACIITDPLWYFVHAVANDFKLPTIIL 141 (460)
Q Consensus 114 ~pDlvi~D~~~~~~~~vA~~lgIP~v~~ 141 (460)
+||++|..... ..+|+++|||++.+
T Consensus 358 ~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCcc---chhhhhcCCCEEec
Confidence 89999998654 35899999999886
No 300
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=43.71 E-value=2.1e+02 Score=31.72 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHh
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAK 92 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.++|++++..+. -...+++.|.+-|-+|..++......... ..+ ...+.++ ..-.
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~--~~~-----~~~~~~~-------------~~vi 373 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDF--ARM-----KALMHKD-------------AHII 373 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHH--HHH-----HHhcCCC-------------CEEE
Confidence 468898887553 25668888888999997765531111000 000 0000000 0001
Q ss_pred cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEe
Q 012613 93 CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQ 142 (460)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~ 142 (460)
....+.++.+.+++ . +||++|.... ...+|+++|||++...
T Consensus 374 ~~~d~~el~~~i~~-----~-~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 374 EDTSTAGLLRVMRE-----K-MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred ECCCHHHHHHHHHh-----c-CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 11223344444444 3 8999999754 4558999999999654
No 301
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=43.62 E-value=26 Score=28.16 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 26 GHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 26 GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
-.+--.+-++..|.++||+|++.+++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCH
Confidence 45667889999999999999999987
No 302
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.32 E-value=40 Score=31.50 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=38.5
Q ss_pred hhcCCCccceeeccCchhHHHhHh----cCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESIC----EGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
+...+|+ +|+=||=||++.|.+ .++|++++-.. .+|--. +++.+++.+++.+++++
T Consensus 65 ~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 65 LGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT--QIPREYMTDKLLPVLEG 124 (296)
T ss_pred cCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee--ccCHHHHHHHHHHHHcC
Confidence 3345676 999999999999975 37898887531 122111 45677777888887765
No 303
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=43.27 E-value=67 Score=26.69 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=33.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
.+.+|+++..+- ++.+-+.||++|.++|.+|.|=++-.+
T Consensus 56 ~~~~vLVLGTgE--fMy~Pl~lA~~Le~~g~~V~~qSTTRS 94 (155)
T PF12500_consen 56 PGERVLVLGTGE--FMYLPLLLAEELEQAGADVRYQSTTRS 94 (155)
T ss_pred CCCcEEEEccch--HHHHHHHHHHHHHhcCCceEEeCCCCC
Confidence 457899988777 899999999999999999999777533
No 304
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=41.67 E-value=60 Score=30.56 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHH
Q 012613 286 IDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTL 365 (460)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~ 365 (460)
........+.+|+.+...+.||.+.++.. -. ++.++++...+-.+|.+ ||=.+-..+++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-----------~~--------rlL~~lD~~~i~~~PK~--fiGySDiTaL~ 108 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDD-----------SN--------ELLPYLDYELIKKNPKI--FIGYSDITALH 108 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccC-----------Hh--------hhhhhcCHHHHhhCCCE--EEeccHHHHHH
Confidence 35567788999999989999999887541 11 33444455555555554 55555555555
Q ss_pred HhHh--cCCceeeccc
Q 012613 366 ESIC--EGVPMICQPY 379 (460)
Q Consensus 366 eal~--~GvP~v~~P~ 379 (460)
-++. .|++.+-=|+
T Consensus 109 ~al~~~~g~~t~hGp~ 124 (308)
T cd07062 109 LAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHhcCCeEEECcc
Confidence 5553 2444444443
No 305
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.07 E-value=73 Score=23.88 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=24.8
Q ss_pred CeeEEE--ECCcc----hhHHHHHHHcCCCeEEEeCccHHH
Q 012613 114 SFACII--TDPLW----YFVHAVANDFKLPTIILQTSSVSA 148 (460)
Q Consensus 114 ~pDlvi--~D~~~----~~~~~vA~~lgIP~v~~~~~~~~~ 148 (460)
+.|+|| +|... ..+...|++.++|+++....+...
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 678876 56554 334568999999999987555543
No 306
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=40.90 E-value=25 Score=32.95 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=31.0
Q ss_pred hhcCCCccceeeccCchhHHHhHh----cCCceeecccccc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESIC----EGVPMICQPYLGD 382 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 382 (460)
.|..-+++++|.=||.||+..|.. .++|+|++|-..|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 566778889999999999977753 7999999998755
No 307
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=40.89 E-value=1.1e+02 Score=29.55 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=52.6
Q ss_pred eEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCch-hHHH-hhcC----Cc-e----------
Q 012613 274 SVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPT-GFVE-MLDG----RG-H---------- 336 (460)
Q Consensus 274 ~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~-~~~~----~~-~---------- 336 (460)
++++.+-||-+...+. ..+++.|++.+++++|+.+....+. ..+|. ++.- ..+. +. .
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~----~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK----TIIEKENIPYYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc----ccCcccCCcEEEEeccCcCCCchHHHHHHHHHH
Confidence 5677777766543332 3366777777889888876554221 11221 1100 0000 00 0
Q ss_pred eeeccChHHhhc--CCCccceeeccCchh---HHHhHhcCCceeec
Q 012613 337 IVKWAPQQEVLA--HPAVGGFLTHGGWNS---TLESICEGVPMICQ 377 (460)
Q Consensus 337 ~~~~vp~~~ll~--~~~~~~~I~HGG~gs---~~eal~~GvP~v~~ 377 (460)
+..++--..++. +||+ +|++||+-| +..|...|+|+++.
T Consensus 77 ~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 001111112344 4666 999999986 89999999999874
No 308
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=40.86 E-value=1.2e+02 Score=31.45 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=38.6
Q ss_pred ccceeeccCc------hhHHHhHhcCCceeecccc-------------cchhhhHHHhhhhheeeEecCC-ccCHHHHHH
Q 012613 352 VGGFLTHGGW------NSTLESICEGVPMICQPYL-------------GDQMVNARYISHVWRLGLHLDG-NVERREIEI 411 (460)
Q Consensus 352 ~~~~I~HGG~------gs~~eal~~GvP~v~~P~~-------------~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ 411 (460)
.+++++|.|- +.+.+|...++|+|++.-. .||....+.+.+ ....+.. .--++.|.+
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk---~s~~v~~~~~i~~~i~~ 140 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITK---HNFQIKKPEEIPEIFRA 140 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcc---eEEecCCHHHHHHHHHH
Confidence 3448888874 4789999999999999421 244444443332 2233333 223455666
Q ss_pred HHHHHhcc
Q 012613 412 AVRRVMIE 419 (460)
Q Consensus 412 ai~~vl~~ 419 (460)
|++..++.
T Consensus 141 A~~~A~~~ 148 (586)
T PRK06276 141 AFEIAKTG 148 (586)
T ss_pred HHHHhcCC
Confidence 66666554
No 309
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.83 E-value=41 Score=31.57 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=38.8
Q ss_pred hhcCCCccceeeccCchhHHHhHhc----CCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESICE----GVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
+...+++ +|+=||-||++.|+.. ++|++++.+. .+|.-. ++.++++.+++++++++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 3345676 9999999999998764 7898888641 122111 35667777788777765
No 310
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.62 E-value=1.9e+02 Score=25.28 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=23.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKG--FSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~V~~~~~~ 51 (460)
|||+|+.++.. +. +.++.+++.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~g-s~--~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNG-SN--LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCC-hh--HHHHHHHHHcCCCCcEEEEEEec
Confidence 78999999873 33 346677777664 777776554
No 311
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=40.60 E-value=30 Score=34.59 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=25.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|||+++..|.-| +.-|.+|+++||+||++=..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEecc
Confidence 577777766543 78899999999999998553
No 312
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=40.52 E-value=3.1e+02 Score=26.93 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=77.5
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccC-chhHHHhhcCCceeee--------ccC
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELL-PTGFVEMLDGRGHIVK--------WAP 342 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~--------~vp 342 (460)
.+++++.-.||.+. -....+++.|.+.|..+-++.+.... ..+ |..+ +...++-.+.+ .+.
T Consensus 6 ~k~IllgvTGsiaa---~k~~~lv~~L~~~g~~V~vv~T~~A~------~fi~~~~l-~~l~~~~V~~~~~~~~~~~~~~ 75 (399)
T PRK05579 6 GKRIVLGVSGGIAA---YKALELVRRLRKAGADVRVVMTEAAK------KFVTPLTF-QALSGNPVSTDLWDPAAEAAMG 75 (399)
T ss_pred CCeEEEEEeCHHHH---HHHHHHHHHHHhCCCEEEEEECHhHH------HHHhHHHH-HHhhCCceEccccccccCCCcc
Confidence 45677777787753 24455777777778776666654331 111 2222 22222211221 123
Q ss_pred hHHhhcCCCccceeeccCchhHH-------------HhHhcCCceeecccccc-------hhhhHHHhhhhheeeEecCC
Q 012613 343 QQEVLAHPAVGGFLTHGGWNSTL-------------ESICEGVPMICQPYLGD-------QMVNARYISHVWRLGLHLDG 402 (460)
Q Consensus 343 ~~~ll~~~~~~~~I~HGG~gs~~-------------eal~~GvP~v~~P~~~D-------Q~~na~~v~~~~G~G~~l~~ 402 (460)
|-++...+|+ .+|.-+=+||+. -++.+++|+|++|.... -..|..++.+ +|+-+.-..
T Consensus 76 hi~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ii~P~ 153 (399)
T PRK05579 76 HIELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRS-RGVEIIGPA 153 (399)
T ss_pred hhhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHH-CCCEEECCC
Confidence 5556665665 466666666543 34667999999995432 2447777777 577654431
Q ss_pred -------------ccCHHHHHHHHHHHhc
Q 012613 403 -------------NVERREIEIAVRRVMI 418 (460)
Q Consensus 403 -------------~~~~~~l~~ai~~vl~ 418 (460)
-.++++|...+.+.+.
T Consensus 154 ~g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 154 SGRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 2567888888877764
No 313
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.50 E-value=57 Score=30.43 Aligned_cols=56 Identities=9% Similarity=0.044 Sum_probs=38.3
Q ss_pred hhcCCCccceeeccCchhHHHhHh----cCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESIC----EGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
+...+++ +|+=||=||++.++. .++|++.+-... +|. . ..++++++.+++++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~------------lGF--l--~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN------------LGF--L--TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC------------CCc--c--cccCHHHHHHHHHHHHcC
Confidence 3345666 999999999999985 367877765311 121 1 145677888888888875
No 314
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=40.42 E-value=55 Score=27.90 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=32.5
Q ss_pred cccCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 8 CRLPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 8 ~~~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|.-..++..++++..++.|-..=..++++++..+|+.|.|+..+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 33345677899999999998888999999999999999998764
No 315
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=40.33 E-value=2.2e+02 Score=25.30 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=27.7
Q ss_pred ceEEEEc-CC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFP-LP-YQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~-~~-~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+.+|++ .. .-|-..-.-.|++.|.++|++|...-|-
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPV 40 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPV 40 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECce
Confidence 3444444 44 3389999999999999999999987553
No 316
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.00 E-value=37 Score=31.89 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.+|+|.|+-.|..| ..+|+.|.+.||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999777665 57899999999999988764
No 317
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=39.87 E-value=56 Score=28.38 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCceEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPL--PYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~--~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
..+|++.++. ++.|=..-...||..|+++|++|.++=..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3355554443 35588899999999999999999887543
No 318
>PLN02712 arogenate dehydrogenase
Probab=39.68 E-value=33 Score=36.17 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=34.4
Q ss_pred cccccccccCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 2 ETKQESCRLPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 2 ~~~~~~~~~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+.+...|....++|+|+|+..|..|. .+|+.|.+.||+|+++..
T Consensus 357 ~~~~~~~~~~~~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr 400 (667)
T PLN02712 357 NAQVSGCVNDGSKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSR 400 (667)
T ss_pred cchhhhccCCCCCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEEC
Confidence 45667788888899999997665443 788999999999987665
No 319
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=39.63 E-value=47 Score=28.58 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=21.9
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|||.++.. ||+ -+.+|-.|++.||+|+.+=..
T Consensus 1 M~I~ViGl---Gyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGL---GYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECC---Ccc--hHHHHHHHHhCCCEEEEEeCC
Confidence 67888744 444 378899999999999987654
No 320
>PRK04148 hypothetical protein; Provisional
Probab=39.49 E-value=60 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.483 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
++++|+.+..|+ | ..+|..|++.||+|+.+=.
T Consensus 16 ~~~kileIG~Gf-G-----~~vA~~L~~~G~~ViaIDi 47 (134)
T PRK04148 16 KNKKIVELGIGF-Y-----FKVAKKLKESGFDVIVIDI 47 (134)
T ss_pred cCCEEEEEEecC-C-----HHHHHHHHHCCCEEEEEEC
Confidence 458899998884 3 3468889899999987643
No 321
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.47 E-value=3.9e+02 Score=28.69 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCceEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPL--PYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~--~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++.++++++. |+.|-..-...||..|+..|+.|.++=..
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3455655554 36688999999999999999999998654
No 322
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=39.47 E-value=86 Score=29.28 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=61.1
Q ss_pred CCcccccccccCCCCCCCCcccccccchhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccc
Q 012613 237 IPVFPIGPFHKYFPASSSSLLSQDESCISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVRE 316 (460)
Q Consensus 237 ~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
.|=.++|....++.. +.....++.....+.+-+++-+-........+...+..+.++++++|..+++-++......
T Consensus 96 ~pdrf~~~~~v~p~~----~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~ 171 (293)
T COG2159 96 YPDRFVGFARVDPRD----PEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA 171 (293)
T ss_pred CCcceeeeeeeCCCc----hHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 446677776666543 2112334556665433233333333333334555678899999999999999877643110
Q ss_pred hhhhc--cCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccC--chhHHHh
Q 012613 317 AEWLE--LLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGG--WNSTLES 367 (460)
Q Consensus 317 ~~~~~--~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG--~gs~~ea 367 (460)
.... ..|-.+ ..-.-.+|+++.++.|.| ..=..|+
T Consensus 172 -~~~~~~~~p~~~---------------~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 172 -GLEKGHSDPLYL---------------DDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred -ccccCCCCchHH---------------HHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0000 111111 223456789999999999 4444444
No 323
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=39.14 E-value=50 Score=30.23 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=25.1
Q ss_pred CeEEEEEccCcccCCHH-HHHHHHHHHhhC--CCceEEEEcCCc
Q 012613 273 KSVIYVSFGSVVNIDET-EFLEIAWGLANS--RVPFLWVVRPGL 313 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~-~~~~~~~al~~~--~~~~i~~~~~~~ 313 (460)
|.++++||||....... .+..+.+.+++. +..+.|++++..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~ 44 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRI 44 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHH
Confidence 46899999998764333 677777777653 678888887644
No 324
>PRK11914 diacylglycerol kinase; Reviewed
Probab=39.09 E-value=1.2e+02 Score=28.42 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCCCccceeeccCchhHHHh
Q 012613 288 ETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHPAVGGFLTHGGWNSTLES 367 (460)
Q Consensus 288 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~ea 367 (460)
.+....+.+.|++.+..+.+.......+ ...+. ........++ +|.-||=||+.|+
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~--------~~~~a--------------~~~~~~~~d~--vvv~GGDGTi~ev 80 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHD--------ARHLV--------------AAALAKGTDA--LVVVGGDGVISNA 80 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHH--------HHHHH--------------HHHHhcCCCE--EEEECCchHHHHH
Confidence 4456677888888777655443322100 01110 0112233455 9999999999998
Q ss_pred H----hcCCceeeccc
Q 012613 368 I----CEGVPMICQPY 379 (460)
Q Consensus 368 l----~~GvP~v~~P~ 379 (460)
+ ..++|+-++|.
T Consensus 81 v~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 81 LQVLAGTDIPLGIIPA 96 (306)
T ss_pred hHHhccCCCcEEEEeC
Confidence 7 45799999996
No 325
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=39.08 E-value=55 Score=32.19 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCceEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 13 NGKRVILFPL--PYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~Il~~~~--~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
++++|+.+.. |+.|-..-.+.||..|+.+|++|.++=.
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 3556655554 6779999999999999999999988744
No 326
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=39.05 E-value=45 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=33.2
Q ss_pred CCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 11 PRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 11 ~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
..++..|+++++|+. +...+..+++|.+.|.+++++...
T Consensus 6 ~~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 6 LREGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp EESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 356789999999987 577899999999999999997663
No 327
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=39.02 E-value=1e+02 Score=30.86 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=51.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHH-
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLY-SKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNA- 91 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~-~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 91 (460)
++|++++..+. -.+.+++.|. +-|-+|..+++..... .+.......+..
T Consensus 325 GkrvaI~~~~~-----~~~~l~~~l~~ElGmevv~~~~~~~~~------------------------~~~~~~~~~~~~~ 375 (457)
T TIGR01284 325 GKKVWVWSGGP-----KLWHWPRPLEDELGMEVVAVSTKFGHE------------------------DDYEKIIARVREG 375 (457)
T ss_pred CCEEEEECCCc-----HHHHHHHHHHHhCCCEEEEEEEEeCCH------------------------HHHHHHHHhcCCC
Confidence 67888766553 3378888887 5899998876642210 000001100000
Q ss_pred -h--cchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEE
Q 012613 92 -K--CVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIIL 141 (460)
Q Consensus 92 -~--~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~ 141 (460)
. .+....++.+.+.+ . +||++|.... ...+|+++|||++.+
T Consensus 376 ~~~i~d~~~~e~~~~i~~-----~-~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 376 TVIIDDPNELELEEIIEK-----Y-KPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred eEEEeCCCHHHHHHHHHh-----c-CCCEEEecCC---cchhhhhcCCCEEEc
Confidence 0 01112223333333 3 8999998864 456899999999885
No 328
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=38.86 E-value=5.1 Score=21.27 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=13.3
Q ss_pred CchhHHHhHhcCCceee
Q 012613 360 GWNSTLESICEGVPMIC 376 (460)
Q Consensus 360 G~gs~~eal~~GvP~v~ 376 (460)
|.|++.-.|..|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888899999888764
No 329
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=38.86 E-value=30 Score=28.97 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=33.1
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCeEEEEcC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP-LNACNYPHFEFHSIS 69 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~-~~~~~~~gi~~~~~~ 69 (460)
+.++|.++-++++||- -|.-|++.|++|++.-.+... ...++..|++..++.
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 3589999999999985 578899999999997665331 111122577665555
No 330
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=38.72 E-value=46 Score=29.89 Aligned_cols=36 Identities=8% Similarity=-0.015 Sum_probs=27.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSK--GFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~V~~~~~~ 51 (460)
||++--.|+.+=+.-...|+++|.++ ||+|.++.++
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~ 38 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSR 38 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEECh
Confidence 35555555533347899999999999 9999999986
No 331
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=38.70 E-value=4.7e+02 Score=27.19 Aligned_cols=35 Identities=6% Similarity=-0.030 Sum_probs=26.5
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++.++|+++..+ .-...++++..+.|++|.++.+.
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~ 54 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPL 54 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 456789888777 33466677778889999998775
No 332
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=38.69 E-value=1.5e+02 Score=25.52 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=41.2
Q ss_pred hHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 367 SICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 367 al~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
..-...|+|.+.-++|=++--+.... |+---+.+.++.+.|.++|++.+..
T Consensus 72 ~~~~~~PVIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 72 ERGIRLPVIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred hcCCCCCEEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 34457899999999999887776654 7766677788999999999999976
No 333
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=38.49 E-value=1.2e+02 Score=31.37 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=22.3
Q ss_pred ccceeeccCch------hHHHhHhcCCceeecc
Q 012613 352 VGGFLTHGGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 352 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 378 (460)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34489998866 5789999999999995
No 334
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=38.44 E-value=58 Score=32.72 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=37.3
Q ss_pred cCCCccceeeccCchhHHHhHhc----CCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 348 AHPAVGGFLTHGGWNSTLESICE----GVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
..+|+ +|+=||-||++.|... ++|++++-+. .+|-. ..++.+++.++|.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~G--------------~LGFL--t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSMG--------------SLGFM--TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------Cccee--cccCHHHHHHHHHHHHcC
Confidence 35666 9999999999999774 5677766310 12321 146778888888888876
No 335
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.28 E-value=60 Score=27.40 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIH 49 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~ 49 (460)
.+..+|++++.++. .=-=-+.+|+.|+++|++|+++.
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 44678888887763 33346889999999999999943
No 336
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=37.91 E-value=2.1e+02 Score=23.89 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=57.5
Q ss_pred EcCCCccCHHHH-HHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCC--------CCc-cCcccHHHHHHHH
Q 012613 20 FPLPYQGHINPM-LQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLS--------ETE-ASTEDMVAILIAL 89 (460)
Q Consensus 20 ~~~~~~GH~~p~-~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~--------~~~-~~~~~~~~~~~~~ 89 (460)
+.+...+....+ -.+|.+|+++|++|.=+...................++++.. ++. ...-+...+...
T Consensus 4 v~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A- 82 (159)
T PF10649_consen 4 VVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEA- 82 (159)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHH-
Confidence 344444555554 479999999999998666542222221113455555553321 111 111223222111
Q ss_pred HHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcc---------hhHHHHHHHcCCCeEEEeCc
Q 012613 90 NAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW---------YFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~---------~~~~~vA~~lgIP~v~~~~~ 144 (460)
+ ..++...+ . ++|++|..-|. ...+.-|-..|||+++.-+.
T Consensus 83 ---~-----~~l~~al~-----~-~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 83 ---S-----AALRRALA-----E-GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred ---H-----HHHHHHHh-----c-CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 1 12222222 2 79999988765 11233466779999986544
No 337
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=37.90 E-value=1.7e+02 Score=28.00 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=62.6
Q ss_pred CceEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCc--cCcccHHHHHHHH
Q 012613 14 GKRVILFPLPYQ--GHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETE--ASTEDMVAILIAL 89 (460)
Q Consensus 14 ~~~Il~~~~~~~--GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (460)
++||.++++|+. |==.-...+.+.+...|.+|.-+-..+.--.....-.++...+.+-+..+- .-+....++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~---- 77 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEF---- 77 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCc----
Confidence 589999998865 777778899999999999988766542211111000111111111111110 000000000
Q ss_pred HHhcchhHHHHHHHhhccCCCCCCCeeEEE---ECCcchhHHHHHHHcCCCeEEE
Q 012613 90 NAKCVVPFWDCLVKLTSISNVQEDSFACII---TDPLWYFVHAVANDFKLPTIIL 141 (460)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi---~D~~~~~~~~vA~~lgIP~v~~ 141 (460)
...+.....++.+++ . +.|.+| .|-....+..++++.++|+|.+
T Consensus 78 --~~~e~~~~~~~~l~~-----~-gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 78 --KTEEGRKVAAENLKK-----L-GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred --ccHHHHHHHHHHHHH-----c-CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 000111134455555 3 566665 5767788889999999999984
No 338
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=37.84 E-value=2.6e+02 Score=23.90 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=62.0
Q ss_pred ccccccCC-CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC---C---CCCCCCCCeEEEEcCCCCCCCcc
Q 012613 5 QESCRLPR-NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLN---P---LNACNYPHFEFHSISASLSETEA 77 (460)
Q Consensus 5 ~~~~~~~~-~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~---~---~~~~~~~gi~~~~~~~~~~~~~~ 77 (460)
|.+..... .+.-|-+++..+.|-..-.+.+|-+-+.+|.+|.++---.. . ......+++++..+..+..-..
T Consensus 11 ~~~~~~~~~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~- 89 (178)
T PRK07414 11 NSSLPLPYTIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDT- 89 (178)
T ss_pred CcccccCCCCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeC-
Confidence 33443333 36788999999999999999999888889999998642111 1 0111224788887765432111
Q ss_pred CcccHHHHHHHHHHhcchhHHHHHHHhhccCCCCCCCeeEEEECCcc
Q 012613 78 STEDMVAILIALNAKCVVPFWDCLVKLTSISNVQEDSFACIITDPLW 124 (460)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~ 124 (460)
.+.... -...+...+....+.+.. . .+|+||-|-..
T Consensus 90 --~~~~~~---~~~~~~~~~~~a~~~l~~-----~-~~dlvVLDEi~ 125 (178)
T PRK07414 90 --PHLDES---EKKALQELWQYTQAVVDE-----G-RYSLVVLDELS 125 (178)
T ss_pred --CCcCHH---HHHHHHHHHHHHHHHHhC-----C-CCCEEEEehhH
Confidence 111100 012222333333333433 3 78999999765
No 339
>PRK12342 hypothetical protein; Provisional
Probab=37.56 E-value=57 Score=29.72 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=23.9
Q ss_pred CeeEEEECCcc------hhHHHHHHHcCCCeEEEeCc
Q 012613 114 SFACIITDPLW------YFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 114 ~pDlvi~D~~~------~~~~~vA~~lgIP~v~~~~~ 144 (460)
+||+|++-..+ ..+..+|+.||+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 68999975444 33678999999999997543
No 340
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=37.50 E-value=82 Score=24.64 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
||++..-++.|-......+++.|+++|.+|.++-..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 478888899999999999999999999999988775
No 341
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=37.48 E-value=2e+02 Score=26.13 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=34.9
Q ss_pred ChHHhhcCCCccceee----ccCchhHHHhHhcCCceeecccccc--hhhhHHHhhhhheeeEecCC
Q 012613 342 PQQEVLAHPAVGGFLT----HGGWNSTLESICEGVPMICQPYLGD--QMVNARYISHVWRLGLHLDG 402 (460)
Q Consensus 342 p~~~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~D--Q~~na~~v~~~~G~G~~l~~ 402 (460)
+..+++..+|+ +|. +...--+..|+.+|+|+|+-|...+ |..--.... + ++++.+..
T Consensus 53 dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 53 DLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred CHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 34556666665 662 2335567779999999999886544 333333322 3 67766655
No 342
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=37.31 E-value=48 Score=30.94 Aligned_cols=69 Identities=14% Similarity=0.032 Sum_probs=39.4
Q ss_pred HhcCCceeeccccc-----------chhhhHHHhhhhheeeEecCC--ccCHHHHHHHHHHHhcccc--HHHHHHHHHHH
Q 012613 368 ICEGVPMICQPYLG-----------DQMVNARYISHVWRLGLHLDG--NVERREIEIAVRRVMIETE--GQEMRERILYS 432 (460)
Q Consensus 368 l~~GvP~v~~P~~~-----------DQ~~na~~v~~~~G~G~~l~~--~~~~~~l~~ai~~vl~~~~--~~~~~~~a~~~ 432 (460)
-.+++|+|+..|.. .|-.+++.-..+ ..-..+.. +..+.++.+.+=++-+.++ ...+.+..-++
T Consensus 210 ~ky~~P~VVaGFEP~DiL~~i~~ll~q~~~g~akv~N-eY~RaV~~eGN~~Aq~~i~~vFev~d~~WRGlg~I~~Sgl~L 288 (364)
T COG0409 210 EKYKFPIVVAGFEPLDILLGVLMLLKQIIRGEAKVEN-EYKRAVKDEGNVKAQELINEVFEVEDSEWRGLGVIPESGLKL 288 (364)
T ss_pred HhcCCCeEEecCCHHHHHHHHHHHHHHHhcCceEEEe-cceeecCCCcCHHHHHHHHHHhccCcccccCCCccccchhhh
Confidence 35689999998753 344433333332 33333433 5556666665555532333 23567778888
Q ss_pred HHHHH
Q 012613 433 KEKAH 437 (460)
Q Consensus 433 ~~~~~ 437 (460)
++++.
T Consensus 289 r~e~~ 293 (364)
T COG0409 289 REEYA 293 (364)
T ss_pred hHHHH
Confidence 88877
No 343
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.22 E-value=27 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCccceeeccCchhHHHhHh------cCCceeeccc
Q 012613 349 HPAVGGFLTHGGWNSTLESIC------EGVPMICQPY 379 (460)
Q Consensus 349 ~~~~~~~I~HGG~gs~~eal~------~GvP~v~~P~ 379 (460)
.+|+ +|+-||=||++.|++ .++|++++-.
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 3566 999999999999986 4889888763
No 344
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=37.14 E-value=40 Score=31.50 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|||+++..|+.| ..+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 688898877765 4678889999999999876
No 345
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=37.07 E-value=50 Score=28.89 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
-+.++|+++..|..| ...++.|.+.|++|+++++.
T Consensus 8 l~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 457889988776544 67889999999999999875
No 346
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.57 E-value=1.1e+02 Score=22.63 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=26.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHh
Q 012613 408 EIEIAVRRVMIETEGQEMRERILYSKEKAHLCLKP-GGSSYQSLERLIDHIL 458 (460)
Q Consensus 408 ~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 458 (460)
+....++++.+| ...-+|.++.++...+++.+ +.+..--+...+-.|+
T Consensus 17 q~~~lL~~Ii~D---ttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLe 65 (93)
T COG1698 17 QVMQLLDEIIQD---TTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILE 65 (93)
T ss_pred HHHHHHHHHHcc---ccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 344555666777 44555555555555555445 5566555555555544
No 347
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.37 E-value=73 Score=25.65 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=33.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.||++...++-+|-.-.--++..|...|++|.-....
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 57899999999999999999999999999999987653
No 348
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=36.34 E-value=83 Score=29.12 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+..+++++..+. =+.|++.++++|.++|++|+++-..
T Consensus 97 ~~~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~ 133 (281)
T PRK06222 97 KFGTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGA 133 (281)
T ss_pred CCCeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEec
Confidence 356888888776 4999999999999999999987654
No 349
>PRK13604 luxD acyl transferase; Provisional
Probab=36.22 E-value=72 Score=29.95 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=29.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITII 48 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~ 48 (460)
+...+++..+..++-.-+..+|+.|.++|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 45677777777777777999999999999998875
No 350
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=36.06 E-value=2.4e+02 Score=26.90 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=39.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLS 73 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 73 (460)
+..++++.+- .|...-++..++..+++|..|..++............++.++.+|.+..
T Consensus 78 ~~dlvI~iS~-SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~~~~~~i~ip~~~~ 136 (337)
T PRK08674 78 EKTLVIAVSY-SGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKEHGLPVIIVPGGYQ 136 (337)
T ss_pred CCcEEEEEcC-CCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHhcCCeEEEeCCCCc
Confidence 4455555554 4889999999999999999988877642222222224677888886553
No 351
>PRK08322 acetolactate synthase; Reviewed
Probab=36.00 E-value=1.6e+02 Score=30.37 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.2
Q ss_pred ccceeeccCch------hHHHhHhcCCceeecc
Q 012613 352 VGGFLTHGGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 352 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 378 (460)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44488888844 7889999999999995
No 352
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=35.92 E-value=34 Score=32.48 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.8
Q ss_pred hhcCCCccceeeccCchhHHHhHh---cCCceeecccccc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESIC---EGVPMICQPYLGD 382 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 382 (460)
-|..-++.++|.=||-||+..|.. .|+|+|++|-..|
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 566678888999999999987754 5999999998654
No 353
>PRK13768 GTPase; Provisional
Probab=35.90 E-value=97 Score=28.16 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=31.7
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.+++...++.|-..-...++..|..+|++|.++.-.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 4567777788899999999999999999999998654
No 354
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=35.88 E-value=33 Score=32.41 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.3
Q ss_pred HhhcCCCccceeeccCchhHHHhHh---cCCceeecccccc
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESIC---EGVPMICQPYLGD 382 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 382 (460)
+-|..-++.++|.=||-||..-|.. +|+|+|++|-..|
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 3566778889999999999887754 5999999998655
No 355
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=35.74 E-value=4.8e+02 Score=26.36 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=24.6
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 24 YQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 24 ~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
..|-..-...|++.|+++|.+|..+-+.
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3488889999999999999999988774
No 356
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=35.68 E-value=21 Score=32.54 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=24.9
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCccH
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSSV 146 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~~ 146 (460)
.||+|| .|+.. ..+..=|.++|||+|.+..+..
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 689877 56555 5566779999999999876533
No 357
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.58 E-value=70 Score=29.90 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=38.9
Q ss_pred cCCCccceeeccCchhHHHhHh----cCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 348 AHPAVGGFLTHGGWNSTLESIC----EGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
..+++ +|+=||-||+++++. .++|++++... + +|. + ..++.+++.++|.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~---lGF-l-~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-----------R---LGF-L-TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c---ccc-c-ccCCHHHHHHHHHHHHcC
Confidence 34566 999999999999975 36788887652 1 221 1 146778888888888875
No 358
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=35.45 E-value=61 Score=27.21 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.5
Q ss_pred ceeeccCch------hHHHhHhcCCceeeccc
Q 012613 354 GFLTHGGWN------STLESICEGVPMICQPY 379 (460)
Q Consensus 354 ~~I~HGG~g------s~~eal~~GvP~v~~P~ 379 (460)
++++|+|-| .+.+|...++|+|++.-
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 388888855 67799999999999954
No 359
>CHL00067 rps2 ribosomal protein S2
Probab=35.35 E-value=25 Score=31.52 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=24.8
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCccH
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSSV 146 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~~ 146 (460)
.||+|| .|+.. ..+..=|.++|||+|.+..+..
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 688877 55554 4567779999999999876543
No 360
>PRK07206 hypothetical protein; Provisional
Probab=35.24 E-value=1.3e+02 Score=29.48 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=23.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++|+++-.... ...+++++.++|+++.++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 56777665433 356899999999999888765
No 361
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=34.96 E-value=2.2e+02 Score=25.54 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=30.5
Q ss_pred chhhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEE
Q 012613 263 CISWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWV 308 (460)
Q Consensus 263 l~~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (460)
+.+|+. ..++++||-.-|.........+...++++++|..+...
T Consensus 24 ~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l 67 (233)
T PRK05282 24 IAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGI 67 (233)
T ss_pred HHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 345555 35679999887765445666777889999988774433
No 362
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=34.96 E-value=69 Score=27.92 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=30.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.+|-+=..|+.|-.+-|+.=|++|.++|-+|++-.-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 46788888999999999999999999999999985544
No 363
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=34.62 E-value=77 Score=29.57 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeC
Q 012613 13 NGKRVILFPLPYQG-H---INPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~Il~~~~~~~G-H---~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+++||+++..|..+ | +.....++++|.+.||+|..+-.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 57899888877543 2 46778899999999999987743
No 364
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=34.62 E-value=1.3e+02 Score=28.90 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=20.9
Q ss_pred hhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhh
Q 012613 266 WLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLAN 300 (460)
Q Consensus 266 ~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~ 300 (460)
.-.+.++|.+||++-|=.+. .+.....+.+|-++
T Consensus 124 iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~ 157 (364)
T PRK15062 124 IARENPDKEVVFFAIGFETT-APATAATLLQAKAE 157 (364)
T ss_pred HHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHc
Confidence 33445688999999886554 33444445555554
No 365
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=34.61 E-value=1.3e+02 Score=28.75 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.2
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGF-SITIIHT 50 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh-~V~~~~~ 50 (460)
+.+|+++..|+.| -.+|+.|++.|. +++++=.
T Consensus 24 ~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeC
Confidence 5789999988766 567899999998 6666544
No 366
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=34.57 E-value=59 Score=32.60 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=32.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
++||++.-.|+. -.+=...|+++|.++|++|.++.++..
T Consensus 70 ~k~IllgVtGsI-Aayka~~lvr~L~k~G~~V~VvmT~sA 108 (475)
T PRK13982 70 SKRVTLIIGGGI-AAYKALDLIRRLKERGAHVRCVLTKAA 108 (475)
T ss_pred CCEEEEEEccHH-HHHHHHHHHHHHHhCcCEEEEEECcCH
Confidence 578888777764 456889999999999999999998743
No 367
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=34.55 E-value=55 Score=30.36 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++|.|+-.+..| .+.|+.|.++||+|++.--.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 478888777765 58899999999999997653
No 368
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=34.52 E-value=74 Score=30.19 Aligned_cols=40 Identities=10% Similarity=0.258 Sum_probs=34.9
Q ss_pred ceEEE--EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 15 KRVIL--FPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 15 ~~Il~--~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
.-|.+ ++.|+.|-.--...|++.|.++|++|.+++-.+..
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 45667 78899999999999999999999999999987544
No 369
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=34.44 E-value=37 Score=31.64 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=35.5
Q ss_pred cCCCccceeeccCchhHHHhHhc----CCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 348 AHPAVGGFLTHGGWNSTLESICE----GVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
..+++ +|+-||-||+++++.. ++|++++-.. .+|.-. +.+.+++.++|.+++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT--DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc--cCCHHHHHHHHHHHHcC
Confidence 35666 9999999999999874 6788876521 112111 35556666666666654
No 370
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=34.33 E-value=84 Score=26.69 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCC-------------CCCCC-----c-cCcccHHHH
Q 012613 26 GHINPMLQIASVL-YSKGFSITIIHTNLNPLNACNYPHFEFHSISA-------------SLSET-----E-ASTEDMVAI 85 (460)
Q Consensus 26 GH~~p~~~La~~L-~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~-------------~~~~~-----~-~~~~~~~~~ 85 (460)
+.+.-.+..|++| ...|.+|.+..+. +.....+..++..+.++. ..... + ....+...+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~ 95 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESI 95 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHH
Confidence 6677889999999 8899999887664 222221112344444441 00000 0 000112111
Q ss_pred HHHHHH-------hcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCccHH
Q 012613 86 LIALNA-------KCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTSSVS 147 (460)
Q Consensus 86 ~~~~~~-------~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~~~~ 147 (460)
-..+.. .....+...++++.. . +.|+||.+.. +...|+++|+|++.+.++..+
T Consensus 96 ~~ll~~~i~~~~~~~~~e~~~~i~~~~~-----~-G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 96 EELLGVDIKIYPYDSEEEIEAAIKQAKA-----E-GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHT-EEEEEEESSHHHHHHHHHHHHH-----T-T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHhCCceEEEEECCHHHHHHHHHHHHH-----c-CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 111111 012344456777766 4 8999999963 568999999999998775443
No 371
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=34.22 E-value=1.9e+02 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 012613 32 LQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 32 ~~La~~L~~rGh~V~~~~~~ 51 (460)
..|..+|.+.||+|++++-.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 46788999999999999865
No 372
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=34.21 E-value=89 Score=25.27 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=28.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 18 ILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 18 l~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
.++.++..--+.|..-++...+++|++|+++.+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 345566668899999999999999999999888
No 373
>PLN02240 UDP-glucose 4-epimerase
Probab=34.21 E-value=67 Score=30.61 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=23.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+++|++. |+.|.+- ..|+++|.++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 4566653 4446653 4568999999999998863
No 374
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=34.09 E-value=52 Score=31.05 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=29.1
Q ss_pred ceEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQ---GHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~---GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+|+|+.-|-. -+......|.++.++|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 57777775532 45567789999999999999999886
No 375
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=33.95 E-value=72 Score=29.08 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=24.1
Q ss_pred CeeEEEECCcc------hhHHHHHHHcCCCeEEEeCc
Q 012613 114 SFACIITDPLW------YFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 114 ~pDlvi~D~~~------~~~~~vA~~lgIP~v~~~~~ 144 (460)
.||+|++-..+ ..+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 68999975444 34677999999999997554
No 376
>PRK07236 hypothetical protein; Provisional
Probab=33.87 E-value=49 Score=32.17 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=30.0
Q ss_pred ccCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 9 RLPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 9 ~~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|+.|..++|+++-.|-. -+.+|..|+++|++|+++=.
T Consensus 1 ~~~~~~~~ViIVGaG~a-----Gl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLG-----GLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCCCeEEEECCCHH-----HHHHHHHHHhCCCCEEEEec
Confidence 35677899999987743 47899999999999999764
No 377
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=33.86 E-value=24 Score=31.48 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=24.9
Q ss_pred CeeEEE-ECCcc-hhHHHHHHHcCCCeEEEeCccH
Q 012613 114 SFACII-TDPLW-YFVHAVANDFKLPTIILQTSSV 146 (460)
Q Consensus 114 ~pDlvi-~D~~~-~~~~~vA~~lgIP~v~~~~~~~ 146 (460)
.||+|| .|+.. ..+..=|.++|||+|.+..+..
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 689877 56654 5567779999999999865533
No 378
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.84 E-value=3e+02 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=23.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCC--eEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGF--SITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh--~V~~~~~~ 51 (460)
|||+++.++..+ .+..+.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs---~~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGS---NLQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCCh---hHHHHHHHHHcCCCCceEEEEEEC
Confidence 588888887743 34577777877665 66665554
No 379
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=33.82 E-value=59 Score=27.63 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=26.5
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHh-CCCeEEEEeCCCC
Q 012613 17 VILFPLPYQGHINP-MLQIASVLYS-KGFSITIIHTNLN 53 (460)
Q Consensus 17 Il~~~~~~~GH~~p-~~~La~~L~~-rGh~V~~~~~~~~ 53 (460)
|++--.++ ||... ...+.++|.+ +||+|.++.++..
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 44444444 78766 8899999984 5999999988733
No 380
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=33.64 E-value=33 Score=31.05 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCccceeeccCchhHHHhHhc----CCceeeccc
Q 012613 350 PAVGGFLTHGGWNSTLESICE----GVPMICQPY 379 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~ 379 (460)
+|+ +|+-||=||++.|++. ++|++++-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 466 9999999999988664 689888764
No 381
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=33.51 E-value=44 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.463 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 27 HINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 27 H~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+..|...|++|.++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6788999999999999999998775
No 382
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=33.47 E-value=57 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012613 11 PRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITII 48 (460)
Q Consensus 11 ~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~ 48 (460)
..++++|++..++..| ..+|+.|.+.||+|++.
T Consensus 25 ~l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 25 SLEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 3457899998887443 67899999999999853
No 383
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.39 E-value=61 Score=29.72 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=36.1
Q ss_pred CCccceeeccCchhHHHhHhc-----CCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcc
Q 012613 350 PAVGGFLTHGGWNSTLESICE-----GVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIE 419 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~ 419 (460)
+|+ +|+=||=||++.|++. .+|++++-..+ + +|-- .+++.+++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G----------~---lGFL--~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD----------Q---LGFY--CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC----------C---CeEc--ccCCHHHHHHHHHHHHcC
Confidence 566 9999999999999874 56766665411 1 2211 145667788888888765
No 384
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=33.16 E-value=1.2e+02 Score=25.97 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+++.|+|...++.|=-.-...|+++|..+|+.|.++..+
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 467789999999999999999999999999999876655
No 385
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.13 E-value=1.6e+02 Score=24.66 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=51.4
Q ss_pred hhHHHhHhcCCceeecccc-cchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 012613 362 NSTLESICEGVPMICQPYL-GDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVMIETEGQEMRERILYSKEKAH 437 (460)
Q Consensus 362 gs~~eal~~GvP~v~~P~~-~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~~~~ 437 (460)
-|+.|--.+|.=-+.==-+ .=+..|+.+.++ +|.=-.+.. ..+.+.|.++..+=|+|++.+.+++.+.++.+..+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3566666666544321100 114679999999 898866655 57889999999888888666778888877766544
No 386
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=32.89 E-value=42 Score=29.50 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCCCCCCCeeEEEECCcchh-------HHHHHHHcCCCeEEEeC
Q 012613 97 FWDCLVKLTSISNVQEDSFACIITDPLWYF-------VHAVANDFKLPTIILQT 143 (460)
Q Consensus 97 l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~-------~~~vA~~lgIP~v~~~~ 143 (460)
+.+.++++.. .||+|++|..... |..+.-.+++|+|.+.=
T Consensus 83 l~~~~~~l~~-------~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK 129 (208)
T cd06559 83 LLEALEKLKT-------KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAK 129 (208)
T ss_pred HHHHHHhCCC-------CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEc
Confidence 4445555544 7999999987733 23345556788888753
No 387
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=32.88 E-value=58 Score=28.86 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHhhccCCCCCCCeeEEEECCcc--hhHHHHHHHcCCCeEEEeCcc
Q 012613 101 LVKLTSISNVQEDSFACIITDPLW--YFVHAVANDFKLPTIILQTSS 145 (460)
Q Consensus 101 l~~l~~~~~~~~~~pDlvi~D~~~--~~~~~vA~~lgIP~v~~~~~~ 145 (460)
+|.+.+ . +||+||..... .....-....+||++.+....
T Consensus 53 ~E~i~~-----l-~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 53 LEAILA-----L-KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHH-----T---SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHHh-----C-CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 455555 4 89999987776 445566778899999987764
No 388
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.83 E-value=75 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=29.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 17 VILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 17 Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
++....++..|-....-++..|.++|++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5666677778999999999999999999998754
No 389
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.81 E-value=1.3e+02 Score=19.80 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 012613 427 ERILYSKEKAHLCLKPGGSSYQSLERLIDHI 457 (460)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (460)
+..+++.+.|. +|-|+..++..+...|
T Consensus 15 ~AVE~Iq~lMa----eGmSsGEAIa~VA~el 41 (60)
T COG3140 15 KAVERIQELMA----EGMSSGEAIALVAQEL 41 (60)
T ss_pred HHHHHHHHHHH----ccccchhHHHHHHHHH
Confidence 33444444444 4555555555444444
No 390
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=32.77 E-value=1e+02 Score=22.19 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012613 17 VILFPLPYQGHINPMLQIASVLYSKGFSITIIH 49 (460)
Q Consensus 17 Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~ 49 (460)
+++...++.|=..-...+|+.|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666678999999999999999999998876
No 391
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.75 E-value=56 Score=29.14 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=24.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+++++..+-.| ..+|+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 456666555433 67999999999999998764
No 392
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.58 E-value=63 Score=29.24 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=24.9
Q ss_pred HHHhhccCCCCCCCeeEEEECCcchh---HHHHHHHcCCCeEEEeCc
Q 012613 101 LVKLTSISNVQEDSFACIITDPLWYF---VHAVANDFKLPTIILQTS 144 (460)
Q Consensus 101 l~~l~~~~~~~~~~pDlvi~D~~~~~---~~~vA~~lgIP~v~~~~~ 144 (460)
+|.+.+ . +||+||....... ...+.+.+|||++.+...
T Consensus 67 ~E~i~~-----l-~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 67 YEKIAA-----L-KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHHHh-----c-CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 566655 4 8999998755432 122444589999988654
No 393
>PRK04940 hypothetical protein; Provisional
Probab=32.55 E-value=1.2e+02 Score=26.07 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.4
Q ss_pred CeeEEEECCcc-hhHHHHHHHcCCCeEEEeCc
Q 012613 114 SFACIITDPLW-YFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 114 ~pDlvi~D~~~-~~~~~vA~~lgIP~v~~~~~ 144 (460)
+++++|...+. +++.-+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 35777766666 99999999999999998654
No 394
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=32.51 E-value=61 Score=31.97 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=25.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|+|.|+..|..| ..+|..|+++||+|+++-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 578888766655 6889999999999988754
No 395
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=32.28 E-value=92 Score=32.12 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=50.4
Q ss_pred ChHHhhcCCCccceee---ccCchhHHHhHhcCCceeeccccc-chhhhHH--HhhhhheeeEecCCccCHHHHHHHHHH
Q 012613 342 PQQEVLAHPAVGGFLT---HGGWNSTLESICEGVPMICQPYLG-DQMVNAR--YISHVWRLGLHLDGNVERREIEIAVRR 415 (460)
Q Consensus 342 p~~~ll~~~~~~~~I~---HGG~gs~~eal~~GvP~v~~P~~~-DQ~~na~--~v~~~~G~G~~l~~~~~~~~l~~ai~~ 415 (460)
|+.+++..|+++.|-+ -=|+ |-+||+++|||.|.-=+.+ -++.+-. .-.. .|+-+.=+...+.++..+.|.+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLAD 539 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHH
Confidence 4455555555533322 0122 8899999999999987643 2222110 1123 3666555557777777777777
Q ss_pred Hhcc-----cc-HHHHHHHHHHHHHHHH
Q 012613 416 VMIE-----TE-GQEMRERILYSKEKAH 437 (460)
Q Consensus 416 vl~~-----~~-~~~~~~~a~~~~~~~~ 437 (460)
.|.+ .+ -..+|++|+++++.+-
T Consensus 540 ~l~~f~~~~~rqri~~Rn~ae~LS~~~d 567 (633)
T PF05693_consen 540 FLYKFCQLSRRQRIIQRNRAERLSDLAD 567 (633)
T ss_dssp HHHHHHT--HHHHHHHHHHHHHHGGGGB
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 7632 11 3467777887776653
No 396
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=32.25 E-value=57 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012613 31 MLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 31 ~~~La~~L~~rGh~V~~~~~~ 51 (460)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 367789999999999998654
No 397
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.17 E-value=71 Score=28.02 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=23.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|++.++-.|-.| ..||+.|++.||+|++.+..
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhCCCeEEEecCC
Confidence 555655444333 57899999999999998764
No 398
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.16 E-value=52 Score=31.38 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|||+|+..|..| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 789999888765 46789999999999998763
No 399
>PRK14071 6-phosphofructokinase; Provisional
Probab=31.38 E-value=43 Score=32.32 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=30.5
Q ss_pred HhhcCCCccceeeccCchhHHHhHh----cCCceeecccccc
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESIC----EGVPMICQPYLGD 382 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 382 (460)
+.|..-+++++|.=||.||+.-+.. .|+|+|++|-..|
T Consensus 101 ~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 101 DGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccccc
Confidence 3566778899999999999866643 4999999997654
No 400
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=31.32 E-value=78 Score=27.22 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcC--CCCCCC
Q 012613 29 NPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSIS--ASLSET 75 (460)
Q Consensus 29 ~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~--~~~~~~ 75 (460)
.-...+|+.|.+.|+++. ++........+ .|+.+..+. .++|+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e-~GI~v~~V~k~TgfpE~ 56 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKE-AGIPVTDVSDITGFPEI 56 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHH-cCCeEEEhhhccCCcHh
Confidence 457899999999999974 33323332222 577666665 344443
No 401
>PRK04946 hypothetical protein; Provisional
Probab=31.29 E-value=36 Score=29.12 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChH-HhhcCCCccceeeccCchhHH
Q 012613 291 FLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQ-EVLAHPAVGGFLTHGGWNSTL 365 (460)
Q Consensus 291 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~-~ll~~~~~~~~I~HGG~gs~~ 365 (460)
+...+..+...+.+.+.++-+.+ .++..+ .+..|+.|. .+++.++. =-+|||.|.++
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~-----~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHG-----------KHILKQ-----QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC-----------HhHHHH-----HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 34444444556888777776654 223111 356787753 46766665 67899998764
No 402
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=31.19 E-value=67 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=28.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEE
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSK-GFSITI 47 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~V~~ 47 (460)
-++.++..+..|..-.+.||..|.+. |.+|.+
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 45677777889999999999999999 999886
No 403
>PRK13054 lipid kinase; Reviewed
Probab=31.03 E-value=2.4e+02 Score=26.31 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=23.4
Q ss_pred CCCccceeeccCchhHHHhHhc------C--Cceeecccc
Q 012613 349 HPAVGGFLTHGGWNSTLESICE------G--VPMICQPYL 380 (460)
Q Consensus 349 ~~~~~~~I~HGG~gs~~eal~~------G--vP~v~~P~~ 380 (460)
..++ +|.-||=||+.|++.. + +|+-++|..
T Consensus 56 ~~d~--vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 56 GVAT--VIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 3455 9999999999998754 3 589999963
No 404
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=30.88 E-value=47 Score=31.96 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=49.0
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcchhHH
Q 012613 19 LFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVVPFW 98 (460)
Q Consensus 19 ~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (460)
|+..++.|..+-...++++..+.|+.|.++....-.... ..-.+..+--|....+... .. ..+...+
T Consensus 15 iLG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~dd~-~v~~v~~~GsP~v~~E~lp---~g--------~e~~~a~- 81 (353)
T PF06032_consen 15 ILGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELPDDD-LVVPVGMMGSPTVSVEKLP---SG--------DEALRAV- 81 (353)
T ss_dssp HTTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--SSE--EEEEEEEE-HHHTT-SS----HH--------HHHHHHH-
T ss_pred EEEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcCCCC-cEeEEEEeCCChHHhccCC---Cc--------hHHHHHH-
Confidence 345677799999999999999999999999886221110 0000111111211111100 00 1111112
Q ss_pred HHHHHhhccCCCCCCCeeEEEECCcc----hhHHHHHHHcCCCeEEE
Q 012613 99 DCLVKLTSISNVQEDSFACIITDPLW----YFVHAVANDFKLPTIIL 141 (460)
Q Consensus 99 ~~l~~l~~~~~~~~~~pDlvi~D~~~----~~~~~vA~~lgIP~v~~ 141 (460)
+.+++.. +. ++|.|++-... ..+..+|..+|+|+|=-
T Consensus 82 ~~le~~~-----g~-~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 82 EALEKYL-----GR-KIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp HHHHHHT-----T---EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred HHHHHhh-----CC-CccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 2233332 24 89999975443 55567899999998864
No 405
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=30.84 E-value=1.1e+02 Score=25.61 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhhC
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLANS 301 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~ 301 (460)
+.+..+|+++||........+...++.+.+.
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3456889999999865666777777777664
No 406
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=30.82 E-value=2.1e+02 Score=26.55 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=20.6
Q ss_pred CCccceeeccCchhHHHhHhc-----CCceee-ccc
Q 012613 350 PAVGGFLTHGGWNSTLESICE-----GVPMIC-QPY 379 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal~~-----GvP~v~-~P~ 379 (460)
+++ +|.-||=||+.|++.. ..|.++ +|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 455 9999999999996643 345554 896
No 407
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.81 E-value=38 Score=31.30 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCCccceeeccCchhHHHhHh---cCCceeeccc
Q 012613 349 HPAVGGFLTHGGWNSTLESIC---EGVPMICQPY 379 (460)
Q Consensus 349 ~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~ 379 (460)
.+++ +|.-||-||+.+++. .++|+++++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 3555 999999999999984 4568888875
No 408
>PRK03202 6-phosphofructokinase; Provisional
Probab=30.79 E-value=43 Score=31.67 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.9
Q ss_pred hhcCCCccceeeccCchhHHHhHh---cCCceeecccccc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESIC---EGVPMICQPYLGD 382 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 382 (460)
-|..-++.++|.=||.+|+.-|.. +|+|+|++|-..|
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 566678888999999999877754 5999999998765
No 409
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.69 E-value=94 Score=22.74 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=27.5
Q ss_pred ceEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEe
Q 012613 15 KRVILFPLPYQ--GHINPMLQIASVLYSKGFSITIIH 49 (460)
Q Consensus 15 ~~Il~~~~~~~--GH~~p~~~La~~L~~rGh~V~~~~ 49 (460)
-+|+++|.... .+..-...++..|.+.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 36788887653 467778999999999999998744
No 410
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=30.66 E-value=90 Score=28.09 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCCceE-EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 12 RNGKRV-ILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~I-l~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+..++| ++.|.|- -=..-+-+....|.++||+|++++-.
T Consensus 8 ~~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 8 LDPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEcc
Confidence 345665 4455554 23356677888889999999997653
No 411
>PRK13236 nitrogenase reductase; Reviewed
Probab=30.47 E-value=1e+02 Score=28.77 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=30.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.|.|..=|+.|-..-...||-.|+++|++|.++=-.
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4455555667799999999999999999999998554
No 412
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=30.39 E-value=59 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=23.8
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
++|.|+-.|..| .++|+.|.++||+|++.-.
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 788888887655 5899999999999988653
No 413
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=30.36 E-value=75 Score=27.84 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNL 52 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~ 52 (460)
-++++|+++..|..| ..-++.|.+.|++||++++..
T Consensus 7 l~gk~vlVvGgG~va-----~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVA-----LRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHH-----HHHHHHHHHCCCEEEEEcCCC
Confidence 456788888776543 677899999999999998863
No 414
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=30.30 E-value=58 Score=35.82 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 12 RNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
.+++||+++-.|-.| +..|..|+.+||+||++=.
T Consensus 381 ~tgKKVaVVGaGPAG-----LsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAG-----FSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHH-----HHHHHHHHhCCCeEEEEcc
Confidence 468999999887544 7899999999999999864
No 415
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=30.28 E-value=98 Score=26.44 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=22.4
Q ss_pred CeeEEEECCc--chhHHHHHHHcCCCeEEE
Q 012613 114 SFACIITDPL--WYFVHAVANDFKLPTIIL 141 (460)
Q Consensus 114 ~pDlvi~D~~--~~~~~~vA~~lgIP~v~~ 141 (460)
++|.|++=.. ...+..+|.++|+|++..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 6899984333 267888999999999996
No 416
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=30.24 E-value=76 Score=19.97 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHH
Q 012613 405 ERREIEIAVRRVMIETEGQEMRERILYS 432 (460)
Q Consensus 405 ~~~~l~~ai~~vl~~~~~~~~~~~a~~~ 432 (460)
+++.|.+||.++.+++ -++++.|+.+
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5788999999998763 3567666654
No 417
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=30.12 E-value=72 Score=31.51 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.5
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
.|+|.|+-.|..| ..+|..|+++||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 4789888666544 5789999999999998754
No 418
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=29.85 E-value=4.5e+02 Score=27.32 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=22.1
Q ss_pred ccceeeccCch------hHHHhHhcCCceeecc
Q 012613 352 VGGFLTHGGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 352 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 378 (460)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44489998854 6788999999999996
No 419
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=29.82 E-value=1.2e+02 Score=24.80 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=30.6
Q ss_pred CCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcC
Q 012613 272 PKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRP 311 (460)
Q Consensus 272 ~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
...+|++.+||......+.++.+++.+.. +.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEECC
Confidence 45799999999988788888888888853 5777776554
No 420
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=29.64 E-value=82 Score=31.10 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCCceEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 12 RNGKRVILFPLPYQ---GHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~Il~~~~~~~---GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.++.+|+++|.=+. --......|++.|.++|.+|.|..+|
T Consensus 304 ~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHP 346 (462)
T PRK09444 304 KNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHP 346 (462)
T ss_pred HhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 45789999884432 23567889999999999999999987
No 421
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=29.49 E-value=94 Score=27.60 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=32.4
Q ss_pred ceEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012613 15 KRVILFPLP--YQGHINPMLQIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 15 ~~Il~~~~~--~~GH~~p~~~La~~L~~rGh~V~~~~~~~~ 53 (460)
.+|.++++| +.|-..-.-.|+-.|+.+|+.|.++-....
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 467777776 559999999999999999999999876633
No 422
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=29.47 E-value=94 Score=28.40 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=30.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+.|.+.-=|+.|-..-...||..|+++|++|.++=.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 566666667789999999999999999999998843
No 423
>PLN00016 RNA-binding protein; Provisional
Probab=29.44 E-value=65 Score=31.27 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=24.9
Q ss_pred CceEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFP--LPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~--~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.++|+++. .|+.|.+- ..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 46777761 13334443 56789999999999998864
No 424
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=29.35 E-value=3.6e+02 Score=23.04 Aligned_cols=135 Identities=9% Similarity=0.093 Sum_probs=69.3
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCC-ceeeecc-------ChH
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGR-GHIVKWA-------PQQ 344 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~v-------p~~ 344 (460)
+++++.-.||.+. -....+++.|.+.+.++-++.+.+. ...+.....+...++ ++...|. .|.
T Consensus 2 k~Ill~vtGsiaa---~~~~~li~~L~~~g~~V~vv~T~~A------~~fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi 72 (182)
T PRK07313 2 KNILLAVSGSIAA---YKAADLTSQLTKRGYQVTVLMTKAA------TKFITPLTLQVLSKNPVHLDVMDEHDPKLMNHI 72 (182)
T ss_pred CEEEEEEeChHHH---HHHHHHHHHHHHCCCEEEEEEChhH------HHHcCHHHHHHHhCCceEeccccccccCCcccc
Confidence 3566666677654 2345577777777776655555432 111221112222222 2222222 233
Q ss_pred HhhcCCCccceeeccCchhHHH-------------hHhc--CCceeeccccc----ch---hhhHHHhhhhheeeEecCC
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLE-------------SICE--GVPMICQPYLG----DQ---MVNARYISHVWRLGLHLDG 402 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~e-------------al~~--GvP~v~~P~~~----DQ---~~na~~v~~~~G~G~~l~~ 402 (460)
++...+|+ .+|.-+-+||+.. ++.. ++|+|++|-.. +. ..|..++.+ +|+=+.-..
T Consensus 73 ~l~~~aD~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~ 150 (182)
T PRK07313 73 ELAKRADL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPK 150 (182)
T ss_pred ccccccCE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCC
Confidence 34444554 3555555553321 2344 89999999532 22 457777877 576544322
Q ss_pred -------------ccCHHHHHHHHHHHhc
Q 012613 403 -------------NVERREIEIAVRRVMI 418 (460)
Q Consensus 403 -------------~~~~~~l~~ai~~vl~ 418 (460)
-.+.++|.+.+.+.+.
T Consensus 151 ~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 151 EGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 2456777777766554
No 425
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=29.34 E-value=1.2e+02 Score=29.40 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 11 PRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 11 ~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+.++|+|++. |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 18 ~~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 3467888876 444554 35789999999999998864
No 426
>PRK03094 hypothetical protein; Provisional
Probab=29.15 E-value=52 Score=23.82 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 012613 31 MLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 31 ~~~La~~L~~rGh~V~~~~~ 50 (460)
+-.+.++|+++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999986654
No 427
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=29.13 E-value=1.1e+02 Score=26.76 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=28.4
Q ss_pred CceEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQ--GHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~--GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.||++++.++- |+ -+..|+.|..+|++|+++...
T Consensus 49 ~~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 49 ARRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred CCEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeC
Confidence 678999998875 44 467899999999999997754
No 428
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=29.07 E-value=4.9e+02 Score=24.47 Aligned_cols=116 Identities=11% Similarity=0.092 Sum_probs=60.1
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCCCCCCCccCcccHHHHHHHHHHhcch
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISASLSETEASTEDMVAILIALNAKCVV 95 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (460)
-++++.+.+ |...-++..++...++|..|..++............|.....+|.+.+...................+..
T Consensus 68 dlvI~iS~S-G~t~e~~~a~~~A~~~g~~ii~iT~~g~L~~~a~~~~~~~i~vP~~~~~R~s~~~~~~~~l~~l~~~~g~ 146 (308)
T TIGR02128 68 TLLIAVSYS-GNTEETLSAVEEAKKKGAKVIAITSGGRLEEMAKERGLDVIKIPKGLQPRAAFPYLLTPLILMLIKPLGI 146 (308)
T ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHcCCEEEEECCCcHHHHHHHhcCCeEEEcCCCCCCeeeHHHHHHHHHHHHHHHcCC
Confidence 344444444 6777777788888899999888876322122221136778888877654332211122222222222222
Q ss_pred hHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcC--CCeEEEeC
Q 012613 96 PFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFK--LPTIILQT 143 (460)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lg--IP~v~~~~ 143 (460)
.+....+.+ . .|+. +.+.-.+-.+|..+. +|.+.-++
T Consensus 147 d~~~~~~~l-~-------~~~~---~~~~n~Ak~LA~~l~~~~pvi~~~~ 185 (308)
T TIGR02128 147 DIEEAELLE-G-------GLDT---PKLKALAKRLAEEIYNRIPVIYSSS 185 (308)
T ss_pred ChHHHHHHh-c-------CCcc---ccccCHHHHHHHHhhCCCCEEEeCC
Confidence 222222222 2 4452 333345667777764 88777664
No 429
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.04 E-value=65 Score=27.14 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=28.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcC
Q 012613 23 PYQGHINPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSIS 69 (460)
Q Consensus 23 ~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~ 69 (460)
|+.|++- ..++++|.++||+|+.++........ ..+++.+...
T Consensus 5 GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d 47 (183)
T PF13460_consen 5 GATGFVG--RALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGD 47 (183)
T ss_dssp TTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESC
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEecCchhccc--ccccccceee
Confidence 4445554 45899999999999999875222111 2567665544
No 430
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.04 E-value=46 Score=30.93 Aligned_cols=32 Identities=6% Similarity=0.014 Sum_probs=24.3
Q ss_pred hhcCCCccceeeccCchhHHHhHh----cCCceeeccc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESIC----EGVPMICQPY 379 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~ 379 (460)
+...+|+ +|+-||-||++.+++ .++|++++-.
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 3345676 999999999998866 3778887653
No 431
>PRK05858 hypothetical protein; Provisional
Probab=28.93 E-value=3.6e+02 Score=27.72 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=21.0
Q ss_pred ceeeccCc------hhHHHhHhcCCceeecc
Q 012613 354 GFLTHGGW------NSTLESICEGVPMICQP 378 (460)
Q Consensus 354 ~~I~HGG~------gs~~eal~~GvP~v~~P 378 (460)
+++.|+|- +.+.+|...++|+|++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 37888874 47899999999999986
No 432
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=28.85 E-value=94 Score=28.08 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=27.1
Q ss_pred eEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012613 16 RVILFP-LPYQGHINPMLQIASVLYSKGFSITII 48 (460)
Q Consensus 16 ~Il~~~-~~~~GH~~p~~~La~~L~~rGh~V~~~ 48 (460)
+|++.. -|+.|-..-.-.||..|++.|++|..+
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 344443 457799999999999999999999987
No 433
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.71 E-value=2e+02 Score=21.42 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=16.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 434 EKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
+-+..+..++++ +..++++++.+.+|
T Consensus 63 ~cv~~a~~~~~~-~~~i~el~~~~~~~ 88 (89)
T COG1937 63 ECVKRAVEDGDE-EESIDELIKALRRY 88 (89)
T ss_pred HHHHHHhhccch-HhHHHHHHHHHHhh
Confidence 333334445554 88999999888764
No 434
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=28.69 E-value=96 Score=28.22 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=31.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++|+|+.=|+.|-..-...||..|+++|++|.++=-.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 4577777778899999999999999999999987543
No 435
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=28.57 E-value=44 Score=32.61 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=30.6
Q ss_pred HhhcCCCccceeeccCchhHHHhHh-------c--CCceeecccccc
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESIC-------E--GVPMICQPYLGD 382 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~-------~--GvP~v~~P~~~D 382 (460)
+.|..-.++++|.=||-||..-|.. . |+|+|++|-..|
T Consensus 106 ~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTID 152 (403)
T PRK06555 106 ERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTID 152 (403)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeee
Confidence 3577778999999999999876643 3 899999997655
No 436
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.33 E-value=75 Score=30.48 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=30.3
Q ss_pred eeeeccChH---HhhcCCCccceeeccCchhHHHhHhcCCceeec
Q 012613 336 HIVKWAPQQ---EVLAHPAVGGFLTHGGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 336 ~~~~~vp~~---~ll~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 377 (460)
.+..++||. .+|-.||+ .|| =|=-|+.-|..+|+|.|=-
T Consensus 245 ~~LPf~~Q~~yD~LLW~cD~-NfV--RGEDSFVRAqWAgkPfvWh 286 (371)
T TIGR03837 245 AVLPFVPQDDYDRLLWACDL-NFV--RGEDSFVRAQWAGKPFVWH 286 (371)
T ss_pred EEcCCCChhhHHHHHHhChh-cEe--echhHHHHHHHcCCCceee
Confidence 445888874 59999996 333 4677999999999999843
No 437
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.32 E-value=93 Score=29.01 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCc-cCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQ-GHIN---PMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~-GH~~---p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.+++|++++.+.. =|-. ....+.++|.++||+|.++...
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 3568887775433 3433 6789999999999999998654
No 438
>PRK13059 putative lipid kinase; Reviewed
Probab=28.27 E-value=2.6e+02 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCccceeeccCchhHHHhH---h---cCCceeeccc
Q 012613 350 PAVGGFLTHGGWNSTLESI---C---EGVPMICQPY 379 (460)
Q Consensus 350 ~~~~~~I~HGG~gs~~eal---~---~GvP~v~~P~ 379 (460)
+++ +|.-||=||+.|++ . .++|+-++|.
T Consensus 57 ~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 57 YKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 455 99999999988874 2 3589999996
No 439
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.21 E-value=56 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHhhcCCCccceeeccCchhHHHhHh----cCCceeeccc
Q 012613 344 QEVLAHPAVGGFLTHGGWNSTLESIC----EGVPMICQPY 379 (460)
Q Consensus 344 ~~ll~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~ 379 (460)
.++...+++ +|+=||=||++.|++ .++|++++-.
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 444445677 999999999998765 3688887753
No 440
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.07 E-value=56 Score=33.40 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=61.4
Q ss_pred ccCHHHHHHHH-HHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcCC-CCC------------CC-----ccCcccHHHH
Q 012613 25 QGHINPMLQIA-SVLYSKGFSITIIHTNLNPLNACNYPHFEFHSISA-SLS------------ET-----EASTEDMVAI 85 (460)
Q Consensus 25 ~GH~~p~~~La-~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~~-~~~------------~~-----~~~~~~~~~~ 85 (460)
.|++.-.+.+| +++...|++|.+..+. +.....+.-.+-++.++. +++ .. +.....-...
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~ 114 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRR 114 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHH
Confidence 37888889999 4477779998886653 332222212233444431 111 00 0000011111
Q ss_pred HHHHHH--------hcchhHHHHHHHhhccCCCCCCCeeEEEECCcchhHHHHHHHcCCCeEEEeCc
Q 012613 86 LIALNA--------KCVVPFWDCLVKLTSISNVQEDSFACIITDPLWYFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 86 ~~~~~~--------~~~~~l~~~l~~l~~~~~~~~~~pDlvi~D~~~~~~~~vA~~lgIP~v~~~~~ 144 (460)
+..+.. .........++++++ . +.++||.|. .+...|+++|++.|.+.+.
T Consensus 115 ~~~ll~~~i~~~~~~~~~e~~~~~~~l~~-----~-G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 115 FQAAFNLDIVQRSYVTEEDARSCVNDLRA-----R-GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHhCCceEEEEecCHHHHHHHHHHHHH-----C-CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 222111 112234457777777 4 889999996 3568999999999998764
No 441
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.04 E-value=1.5e+02 Score=22.90 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceee-------eccChHHh---hcCCCccceeec
Q 012613 289 TEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIV-------KWAPQQEV---LAHPAVGGFLTH 358 (460)
Q Consensus 289 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~vp~~~l---l~~~~~~~~I~H 358 (460)
.....+++++++.|.+.+.+........ .++ +..+..... .|+....| .....+ ...|
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~s--------~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~ 79 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTVS--------THV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIH 79 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTG--------HHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEE
T ss_pred HHHHHHHHHHHHhCCcceeccCchhccc--------ccc--cccccceecCcchhhhhhccHHHHhhHhhhhcC--cccc
Confidence 4467799999999999998876543211 111 112222332 35655543 333344 8889
Q ss_pred cCchhHHHh
Q 012613 359 GGWNSTLES 367 (460)
Q Consensus 359 GG~gs~~ea 367 (460)
+|+|-..|.
T Consensus 80 pGyg~lse~ 88 (110)
T PF00289_consen 80 PGYGFLSEN 88 (110)
T ss_dssp STSSTTTTH
T ss_pred cccchhHHH
Confidence 999877665
No 442
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.99 E-value=1e+02 Score=30.02 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCceEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 12 RNGKRVILFP--LPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~Il~~~--~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
..+++|+.+. =|+.|-..-...||..|+.+|+.|.++=..
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3455655544 447799999999999999999999988543
No 443
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=27.97 E-value=84 Score=29.73 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=28.1
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++|.++-.|++| -+||+.|++.||+|++-+..
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 788999888876 68999999999999998764
No 444
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.94 E-value=88 Score=30.61 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=27.9
Q ss_pred ceEEEEcCC-Cc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLP-YQ--GHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~-~~--GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
-.+.|=|.+ +. ||+.|+..| +.|++.||+|+++...
T Consensus 35 ~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd 73 (401)
T COG0162 35 VYIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGD 73 (401)
T ss_pred EEEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEecc
Confidence 446777777 33 899888876 4688999999998875
No 445
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=27.93 E-value=1.3e+02 Score=27.78 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=33.3
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+..|+|+..++.|-..-...||..|++.|+.|.++...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45667777778899999999999999999999999876
No 446
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=27.91 E-value=74 Score=30.03 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=24.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|||+|+..+.. .++..++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 68999876653 377778899999999876653
No 447
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=27.70 E-value=1.2e+02 Score=26.10 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=23.4
Q ss_pred CeeEEEECCcc--hhHHHHHHHcCCCeEEEeC
Q 012613 114 SFACIITDPLW--YFVHAVANDFKLPTIILQT 143 (460)
Q Consensus 114 ~pDlvi~D~~~--~~~~~vA~~lgIP~v~~~~ 143 (460)
++|+|++-... +.+..+|..+|+|+++..-
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 78999854333 7778899999999999643
No 448
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.66 E-value=3.7e+02 Score=29.03 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.3
Q ss_pred CceEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFP--LPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~--~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.|++.++ -|+.|-..-...||..|+..|++|.++=..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34444444 346699999999999999999999988554
No 449
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=27.63 E-value=75 Score=24.31 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 012613 29 NPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 29 ~p~~~La~~L~~rGh~V~~~~~ 50 (460)
.|.+.|+++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7999999999999999887544
No 450
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=27.61 E-value=1.7e+02 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=22.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE-EeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITI-IHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~-~~~~ 51 (460)
|||+|+..+.. .++..++|.+.||+|.. ++.+
T Consensus 1 mkivf~g~~~~-----a~~~l~~L~~~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAYHDI-----GCVGIEALLAAGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECCCHH-----HHHHHHHHHHCCCcEEEEEeCC
Confidence 68888865543 34556888889999994 4444
No 451
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=27.61 E-value=5.4e+02 Score=26.69 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhccCCCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChH
Q 012613 265 SWLDKHAPKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQ 344 (460)
Q Consensus 265 ~~l~~~~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~ 344 (460)
.|.-..+.+.+++++||++.. ......+.|.+.|..+-++=. +++.-++..
T Consensus 494 k~~i~~~G~~vail~~G~~~~----~al~vae~L~~~Gi~~TVvd~-------------------------rfvkPlD~~ 544 (627)
T COG1154 494 KGELLKEGEKVAILAFGTMLP----EALKVAEKLNAYGISVTVVDP-------------------------RFVKPLDEA 544 (627)
T ss_pred ceEEEecCCcEEEEecchhhH----HHHHHHHHHHhcCCCcEEEcC-------------------------eecCCCCHH
Q ss_pred ---HhhcCCCccceee------ccCchhHHHh--HhcC--Cceeeccc---ccchhhhHHHhhhhheeeEecCCccCHHH
Q 012613 345 ---EVLAHPAVGGFLT------HGGWNSTLES--ICEG--VPMICQPY---LGDQMVNARYISHVWRLGLHLDGNVERRE 408 (460)
Q Consensus 345 ---~ll~~~~~~~~I~------HGG~gs~~ea--l~~G--vP~v~~P~---~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (460)
++..+-++ +|| +||.||-..- -.+| +|++.+.+ +.||..-.....+ +| ++++.
T Consensus 545 ll~~La~~h~~--~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~-~g--------Ld~~~ 613 (627)
T COG1154 545 LLLELAKSHDL--VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAE-LG--------LDAEG 613 (627)
T ss_pred HHHHHHhhcCe--EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHH-cC--------CCHHH
Q ss_pred HHHHHHHHh
Q 012613 409 IEIAVRRVM 417 (460)
Q Consensus 409 l~~ai~~vl 417 (460)
|.+.|...+
T Consensus 614 i~~~i~~~l 622 (627)
T COG1154 614 IARRILEWL 622 (627)
T ss_pred HHHHHHHHH
No 452
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=27.45 E-value=1.2e+02 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=25.0
Q ss_pred hcCCCccceeeccCchhHHHhHhcCCceeecccccchhhhHHHhhhh
Q 012613 347 LAHPAVGGFLTHGGWNSTLESICEGVPMICQPYLGDQMVNARYISHV 393 (460)
Q Consensus 347 l~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 393 (460)
|+..+. .++|||+..+. ...-|-+++|+ +-.+.++++
T Consensus 266 l~~~~~--~~~HgGYD~~~---an~D~N~v~Pl-----D~LreL~~E 302 (349)
T PF07355_consen 266 LSSDDY--MTIHGGYDPAY---ANEDPNRVFPL-----DRLRELEKE 302 (349)
T ss_pred CCccce--EeeccccChhH---hccCCCeeeeH-----HHHHHHHHc
Confidence 444455 99999987764 34778888884 445566664
No 453
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=27.18 E-value=94 Score=30.96 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=29.6
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.+||+++..+..| +.+|+.|.++|++|++.=..
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCC
Confidence 6899999999988 89999999999999997643
No 454
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.16 E-value=1e+02 Score=28.92 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=29.6
Q ss_pred cCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 10 LPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 10 ~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+..+..+..+++.++.| --+.||.+++.+|++||+..-+
T Consensus 28 ~~~k~~~hi~itggS~g---lgl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 28 VKPKPRRHILITGGSSG---LGLALALECKREGADVTITARS 66 (331)
T ss_pred cccCccceEEEecCcch---hhHHHHHHHHHccCceEEEecc
Confidence 33444566777777765 3578999999999999998875
No 455
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=27.10 E-value=6.1e+02 Score=26.32 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=34.5
Q ss_pred eeeccCchhHH-HhHhcCCceeecccccchhhhHHHhhhhheee-EecCCccCHHHHHHHHHHHhc
Q 012613 355 FLTHGGWNSTL-ESICEGVPMICQPYLGDQMVNARYISHVWRLG-LHLDGNVERREIEIAVRRVMI 418 (460)
Q Consensus 355 ~I~HGG~gs~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~l~~ai~~vl~ 418 (460)
++++||+|.+. +....|.+... .....++.++..+. +|+- ..+ -+.++|.+++++.++
T Consensus 459 V~NN~~~g~i~~~q~~~~~~~~~--~~~~~~df~~lA~a-~G~~~~~v---~~~~el~~al~~a~~ 518 (578)
T PRK06546 459 VFNNSTLGMVKLEMLVDGLPDFG--TDHPPVDYAAIAAA-LGIHAVRV---EDPKDVRGALREAFA 518 (578)
T ss_pred EEECCccccHHHHHHhcCCCccc--ccCCCCCHHHHHHH-CCCeeEEe---CCHHHHHHHHHHHHh
Confidence 88999999774 22223333211 11234666776666 6652 222 378889999999863
No 456
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=27.06 E-value=84 Score=27.60 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP 54 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~ 54 (460)
.++||++.-.|+. -.+-...|.+.|. +||+|.++.++...
T Consensus 18 ~~k~IllgVtGSI-AAyk~~~lvr~L~-~g~~V~VvmT~~A~ 57 (209)
T PLN02496 18 RKPRILLAASGSV-AAIKFGNLCHCFS-EWAEVRAVVTKASL 57 (209)
T ss_pred CCCEEEEEEeCHH-HHHHHHHHHHHhc-CCCeEEEEEChhHh
Confidence 3678888877764 4555677999998 59999999987443
No 457
>PRK06526 transposase; Provisional
Probab=27.05 E-value=65 Score=29.33 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=34.3
Q ss_pred ccccCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 7 SCRLPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 7 ~~~~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+|.-..++.+++++..++.|=..=+..|+.++.++|+.|.|.+.
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 44444567788888888888888888999999999999877433
No 458
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.03 E-value=1.9e+02 Score=29.91 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=22.6
Q ss_pred ccceeeccCch------hHHHhHhcCCceeeccc
Q 012613 352 VGGFLTHGGWN------STLESICEGVPMICQPY 379 (460)
Q Consensus 352 ~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 379 (460)
.+++++|.|-| .+.+|...++|+|++.-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g 98 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTG 98 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 44488888844 78899999999999953
No 459
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.01 E-value=58 Score=30.30 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCeEEEEcCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTNLNP--LNACNYPHFEFHSISA 70 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~~~~--~~~~~~~gi~~~~~~~ 70 (460)
+.++|+++.++++||-. |.-|++.|.+|++-..+... ....+ .|++..++.+
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~-dGf~V~~v~e 70 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKE-DGFKVYTVEE 70 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHh-cCCEeecHHH
Confidence 46899999999999965 55688889999986655332 22222 6787777764
No 460
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=26.79 E-value=1.4e+02 Score=25.97 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=29.5
Q ss_pred CceEEEEc--CCCccCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 012613 14 GKRVILFP--LPYQGHINPMLQIASVLYS-KGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~--~~~~GH~~p~~~La~~L~~-rGh~V~~~~~~ 51 (460)
+++++.+. -++.|=-.-...||..|+. +|++|.++=..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45655555 4677999999999999996 69999988554
No 461
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=26.72 E-value=1.3e+02 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.531 Sum_probs=22.6
Q ss_pred eEEEECCcc-hhHHHHHHHcCCCeEEEeCc
Q 012613 116 ACIITDPLW-YFVHAVANDFKLPTIILQTS 144 (460)
Q Consensus 116 Dlvi~D~~~-~~~~~vA~~lgIP~v~~~~~ 144 (460)
.++|...+. +++.-+|+++++|.|.+.+.
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 466655555 88888999999999888655
No 462
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.43 E-value=1.7e+02 Score=25.30 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.4
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
..|+|+..++.-|-.-...++++|++.|-.|.+++-.
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 3378888887788777889999999999999988754
No 463
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.38 E-value=51 Score=30.96 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCCccceeeccCchhHHHhHhc----CCceeeccc
Q 012613 349 HPAVGGFLTHGGWNSTLESICE----GVPMICQPY 379 (460)
Q Consensus 349 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~ 379 (460)
.+++ +|.-||-||+.+++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4566 9999999999999864 789998876
No 464
>PRK14072 6-phosphofructokinase; Provisional
Probab=26.28 E-value=53 Score=32.42 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=30.8
Q ss_pred HhhcCCCccceeeccCchhHHHhHh-------cC--Cceeecccccc
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESIC-------EG--VPMICQPYLGD 382 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~-------~G--vP~v~~P~~~D 382 (460)
+.|..-+++++|.=||-||+.-|.. .| +|+|++|-..|
T Consensus 97 ~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTID 143 (416)
T PRK14072 97 EVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTID 143 (416)
T ss_pred HHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeeccc
Confidence 3677788999999999999876632 46 99999998755
No 465
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=26.23 E-value=74 Score=28.10 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=23.0
Q ss_pred ceEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 15 KRVILFP-LPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~Il~~~-~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|+|.|+- .+..| ..+|+.|++.||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 5787774 44433 4789999999999998754
No 466
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=26.21 E-value=2.8e+02 Score=28.63 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=49.6
Q ss_pred ccCcccCCH-HHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeecc-Ch---------HHhhc
Q 012613 280 FGSVVNIDE-TEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWA-PQ---------QEVLA 348 (460)
Q Consensus 280 ~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v-p~---------~~ll~ 348 (460)
.||.+.... ...+.+++.|++.|.+.+.-+.+... ..+-+.+.+ ..++.++.-. .+ ..+-.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~------~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg 75 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI------LPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTG 75 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc------HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcC
Confidence 344443222 34666888999889988888776541 111122211 0122222110 01 11223
Q ss_pred CCCccceeeccCch------hHHHhHhcCCceeecc
Q 012613 349 HPAVGGFLTHGGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 349 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 378 (460)
++. ++++|.|-| .+.+|...++|+|++.
T Consensus 76 ~~g--v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPA--VCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCe--EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 333 478887754 7899999999999995
No 467
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.15 E-value=1.6e+02 Score=25.47 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=47.2
Q ss_pred hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhc
Q 012613 363 STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVMIETE-GQEMRERILYSKEKAHLCLK 441 (460)
Q Consensus 363 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~~~~~~~~~~~ 441 (460)
+..+++..++=.+..|+..=++..--.+.- ..-...+..-+++.+.|.+ -+++++.++++++++++|-+
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~----------avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVA----------AVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHH----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544333222221111 1233455667778888844 67899999999999998733
Q ss_pred CCCChHHHHHHHHH
Q 012613 442 PGGSSYQSLERLID 455 (460)
Q Consensus 442 ~~~~~~~~~~~~~~ 455 (460)
.+...+++++-+
T Consensus 94 --~~d~~~lkkLq~ 105 (201)
T COG1422 94 --SGDMKKLKKLQE 105 (201)
T ss_pred --hCCHHHHHHHHH
Confidence 334556666544
No 468
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.15 E-value=1.1e+02 Score=21.72 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 012613 30 PMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 30 p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.-+.+|..|+++|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4588999999999999999876
No 469
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=26.14 E-value=38 Score=33.59 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCceEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 12 RNGKRVILFPLPYQ---GHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 12 ~~~~~Il~~~~~~~---GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.++++|+++|.=+. --......|++.|.++|-+|.|..+|
T Consensus 305 ~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 347 (463)
T PF02233_consen 305 ANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHP 347 (463)
T ss_dssp HH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred HhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 45789999984322 34678899999999999999999987
No 470
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=26.02 E-value=86 Score=25.21 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=21.7
Q ss_pred hhcCCCccceeeccCchhHHHhHh----------cCCceeeccc
Q 012613 346 VLAHPAVGGFLTHGGWNSTLESIC----------EGVPMICQPY 379 (460)
Q Consensus 346 ll~~~~~~~~I~HGG~gs~~eal~----------~GvP~v~~P~ 379 (460)
++..++. .++.-||.||.-|... ..+|++++-.
T Consensus 50 m~~~sda-~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 50 MIESSDA-FIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHESE-EEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHhCCE-EEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 4445554 5778999999988743 3459998864
No 471
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=26.01 E-value=57 Score=31.93 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=21.6
Q ss_pred cCHHHHH---HHHHHHHhCCCeEEEEeCCCC
Q 012613 26 GHINPML---QIASVLYSKGFSITIIHTNLN 53 (460)
Q Consensus 26 GH~~p~~---~La~~L~~rGh~V~~~~~~~~ 53 (460)
||+.|++ .+|+-++.+||+|.++++...
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 9999776 578888889999999887533
No 472
>PRK05802 hypothetical protein; Provisional
Probab=25.99 E-value=1.1e+02 Score=29.08 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
...++++++.|. =+.|++.++++|.++|.+|+++-..
T Consensus 171 ~~~~~llIaGGi--GIaPl~~l~~~l~~~~~~v~li~g~ 207 (320)
T PRK05802 171 KNGKSLVIARGI--GQAPGVPVIKKLYSNGNKIIVIIDK 207 (320)
T ss_pred CCCeEEEEEeEE--eHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 346888888666 4999999999999999999987654
No 473
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.94 E-value=84 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=27.4
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.|+|.|+-.|..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 4789999887765 57899999999999998773
No 474
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=25.84 E-value=2.6e+02 Score=27.10 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCC
Q 012613 288 ETEFLEIAWGLANSRVPFLWVVRPG 312 (460)
Q Consensus 288 ~~~~~~~~~al~~~~~~~i~~~~~~ 312 (460)
+.+++.++++|.+.|..+.+.+...
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 4567889999998898877766554
No 475
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=25.83 E-value=1.1e+02 Score=32.29 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=29.0
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+.-|+|.|.|- -.+..+-.....|+++||+|+++.-
T Consensus 370 ~rvLv~spHPD-Devi~~GGTlarl~~~G~~V~vv~~ 405 (652)
T PRK02122 370 KRVIIFSPHPD-DDVISMGGTFRRLVEQGHDVHVAYQ 405 (652)
T ss_pred ceEEEEEeCCC-chHhhhHHHHHHHHHCCCcEEEEEe
Confidence 44456667777 5889999999999999999998654
No 476
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.80 E-value=98 Score=26.46 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC
Q 012613 16 RVILFPLPYQGHINPMLQIASVLYSK 41 (460)
Q Consensus 16 ~Il~~~~~~~GH~~p~~~La~~L~~r 41 (460)
+++++ .|+.||..=|+.|.+.|.++
T Consensus 40 ~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 44444 45669999999999999776
No 477
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=25.80 E-value=5.1e+02 Score=26.98 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=28.8
Q ss_pred eccCchhHHHhHhcC--Cceeec--cc-ccchhhhHHHhhhhheeeEecCCccCHHHHHHHHHHHh
Q 012613 357 THGGWNSTLESICEG--VPMICQ--PY-LGDQMVNARYISHVWRLGLHLDGNVERREIEIAVRRVM 417 (460)
Q Consensus 357 ~HGG~gs~~eal~~G--vP~v~~--P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~l~~ai~~vl 417 (460)
.+||+|+........ +|+..+ |- +.+.. ....+.++ . .++++.|.++|.++|
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g-~~~~l~~~--~------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRV-PVEELYKR--N------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCC-CHHHHHHH--H------CcCHHHHHHHHHHHh
Confidence 469999877666543 333333 32 22322 22222221 2 378888888888765
No 478
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=25.75 E-value=2e+02 Score=21.04 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=18.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHhcC
Q 012613 434 EKAHLCLKPGGSSYQSLERLIDHILSF 460 (460)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (460)
.-+.++...++...+.++++.+.+.+|
T Consensus 59 ~c~~~~~~~~~~~~~~i~el~~~i~ky 85 (85)
T PF02583_consen 59 HCLVEAIQDEEDREEAIEELIKLIDKY 85 (85)
T ss_dssp HHHCCHCCTCCCHHHHHHHHHHHHHH-
T ss_pred HHHHhHhcCcccHHHHHHHHHHHHhcC
Confidence 333344445577889999999988875
No 479
>PRK07454 short chain dehydrogenase; Provisional
Probab=25.73 E-value=1.4e+02 Score=26.40 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=24.1
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
+|+.++++.++ |. --..++++|.++|++|+++.-
T Consensus 5 ~~k~vlItG~s-g~--iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITGAS-SG--IGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 45555665443 43 346789999999999988765
No 480
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.71 E-value=63 Score=23.44 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012613 31 MLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 31 ~~~La~~L~~rGh~V~~~~~~ 51 (460)
+-.+.++|.++||+|+-+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 447899999999999987765
No 481
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=25.69 E-value=1.5e+02 Score=26.65 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+..++++++.++ =+.|++.++++|.+.+++|+++-..
T Consensus 96 ~~~~~lliagG~--GiaP~~~~l~~~~~~~~~v~l~~~~ 132 (248)
T cd06219 96 NYGTVVFVGGGV--GIAPIYPIAKALKEAGNRVITIIGA 132 (248)
T ss_pred CCCeEEEEeCcc--cHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 356888888665 4999999999999888999987654
No 482
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=25.59 E-value=1.6e+02 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=29.5
Q ss_pred ccccccccCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 3 TKQESCRLPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 3 ~~~~~~~~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|..++...+ ++|+|+++-.+. ....+++++.+.|++|.++...
T Consensus 2 ~~~~~~~~~-~~~~ilIiG~g~-----~~~~~~~a~~~~G~~v~~~~~~ 44 (395)
T PRK09288 2 TRLGTPLSP-SATRVMLLGSGE-----LGKEVAIEAQRLGVEVIAVDRY 44 (395)
T ss_pred ccccCCCCC-CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEeCC
Confidence 345555555 567899885442 3455677788899999988764
No 483
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.51 E-value=1.1e+02 Score=30.28 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=21.9
Q ss_pred CeeEEEECCcchhHHHHHHHcCCCeEEEe
Q 012613 114 SFACIITDPLWYFVHAVANDFKLPTIILQ 142 (460)
Q Consensus 114 ~pDlvi~D~~~~~~~~vA~~lgIP~v~~~ 142 (460)
+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 7999999974 4678999999998764
No 484
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=25.48 E-value=1.3e+02 Score=29.54 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=20.5
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 24 YQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 24 ~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.|.+ -..+|++|..+|++|+++..+
T Consensus 209 SSG~~--g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 209 SSGKM--GLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CcchH--HHHHHHHHHHCCCEEEEeCCC
Confidence 44554 356999999999999998865
No 485
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.47 E-value=1.4e+02 Score=26.43 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=22.6
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
++|++. |+.|++ -..|++.|.++||+|++++..
T Consensus 7 ~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 7 RVALVT--GAARGL--GRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 456653 334554 467899999999998775553
No 486
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.46 E-value=3e+02 Score=28.42 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=22.2
Q ss_pred ccceeeccCch------hHHHhHhcCCceeecc
Q 012613 352 VGGFLTHGGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 352 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 378 (460)
.++++.|.|-| .+.+|...++|+|++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488888854 7889999999999995
No 487
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.35 E-value=82 Score=29.81 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=26.0
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
|+|.++..|+.| ..+|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 578888888765 46889999999999988763
No 488
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.35 E-value=1.1e+02 Score=24.30 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=27.0
Q ss_pred CeEEEEEccCcccCCHHHHHHHHHHHhhC--CCceEEEEcC
Q 012613 273 KSVIYVSFGSVVNIDETEFLEIAWGLANS--RVPFLWVVRP 311 (460)
Q Consensus 273 ~~vI~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~ 311 (460)
+.+++++|||......+.+..+.+.+++. +..+-|.+.+
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 36899999999864455677777777542 4466676653
No 489
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=25.34 E-value=3.2e+02 Score=25.75 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=37.2
Q ss_pred CCCeEEEEEccCcccCCHHHHHHHHHHHhhCCCceEEEEcCCcccchhhhccCchhHHHhhcCCceeeeccChHHhhcCC
Q 012613 271 APKSVIYVSFGSVVNIDETEFLEIAWGLANSRVPFLWVVRPGLVREAEWLELLPTGFVEMLDGRGHIVKWAPQQEVLAHP 350 (460)
Q Consensus 271 ~~~~vI~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vp~~~ll~~~ 350 (460)
.++.+-.+.+|+++ +.+++-++..|.+++..-+... ... ....+.+..++|+.+
T Consensus 144 ~gktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~d~~~~----------~~~---------~~~~~~~l~ell~~s 197 (311)
T PRK08410 144 KGKKWGIIGLGTIG-------KRVAKIAQAFGAKVVYYSTSGK----------NKN---------EEYERVSLEELLKTS 197 (311)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHhhcCCEEEEECCCcc----------ccc---------cCceeecHHHHhhcC
Confidence 36789999999887 3344444455777654422110 000 112355778899999
Q ss_pred CccceeeccC
Q 012613 351 AVGGFLTHGG 360 (460)
Q Consensus 351 ~~~~~I~HGG 360 (460)
|+ ++.|.=
T Consensus 198 Dv--v~lh~P 205 (311)
T PRK08410 198 DI--ISIHAP 205 (311)
T ss_pred CE--EEEeCC
Confidence 97 666654
No 490
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=25.25 E-value=1.3e+02 Score=29.11 Aligned_cols=89 Identities=9% Similarity=0.047 Sum_probs=55.4
Q ss_pred eeeeccChHHhhcCCCccceeeccC------------chhHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCCc
Q 012613 336 HIVKWAPQQEVLAHPAVGGFLTHGG------------WNSTLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDGN 403 (460)
Q Consensus 336 ~~~~~vp~~~ll~~~~~~~~I~HGG------------~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (460)
.+.+++..++.+..+|+ +||-=| .+-..-|-.+|||++++--..+ .+...+.+ .|+--.....
T Consensus 270 ~v~~~~~l~~~l~~ADl--VITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~--~~~~~~~~-~g~~a~~~i~ 344 (375)
T TIGR00045 270 LVLELLDLEQKIKDADL--VITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLG--DGVDVLPQ-HGIDAAFSIL 344 (375)
T ss_pred HHHHhhCHHHHhcCCCE--EEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecccC--CChHHHHh-cCccEEEEcC
Confidence 45688888999999998 999888 4556677789999999865432 22344555 3665444432
Q ss_pred cCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 012613 404 VERREIEIAVRRVMIETEGQEMRERILYSKE 434 (460)
Q Consensus 404 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~~~~ 434 (460)
-.+..+.+++++.. +.+++.++++.+
T Consensus 345 ~~~~~l~~a~~~~~-----~~l~~~~~~~~~ 370 (375)
T TIGR00045 345 PSPMPLEDALQNAS-----TNLERTAENIAR 370 (375)
T ss_pred CCCCCHHHHHHHHH-----HHHHHHHHHHHH
Confidence 22334555554442 235555555543
No 491
>PLN02884 6-phosphofructokinase
Probab=25.21 E-value=63 Score=31.77 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=30.9
Q ss_pred HhhcCCCccceeeccCchhHHHhHh-------cC--Cceeecccccc
Q 012613 345 EVLAHPAVGGFLTHGGWNSTLESIC-------EG--VPMICQPYLGD 382 (460)
Q Consensus 345 ~ll~~~~~~~~I~HGG~gs~~eal~-------~G--vP~v~~P~~~D 382 (460)
+.|..-++.++|.=||-||+.-|.. .| +|+|++|-..|
T Consensus 137 ~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTID 183 (411)
T PLN02884 137 DSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTID 183 (411)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEecccccc
Confidence 3677788999999999999976644 56 99999997654
No 492
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=25.10 E-value=1.6e+02 Score=26.48 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=32.4
Q ss_pred cccCCCCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 8 CRLPRNGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 8 ~~~~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
+.+..+..++++++.++ =+.|++++++++.++|++|+++-..
T Consensus 96 f~l~~~~~~~vlIagG~--GiaP~~s~l~~~~~~~~~v~l~~~~ 137 (250)
T PRK00054 96 FDLEEIGGKVLLVGGGI--GVAPLYELAKELKKKGVEVTTVLGA 137 (250)
T ss_pred CCCCCCCCeEEEEeccc--cHHHHHHHHHHHHHcCCcEEEEEEc
Confidence 33433567888888766 4889999999999889999876553
No 493
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=25.07 E-value=1.2e+02 Score=26.61 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=23.5
Q ss_pred ceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE
Q 012613 15 KRVILFPLPYQGHINPMLQIASVLYSKGFSITI 47 (460)
Q Consensus 15 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~ 47 (460)
...+++-....|-......+|+.|+++|+.|.+
T Consensus 14 ~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 14 RPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 455555566778888888999999999977665
No 494
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=24.93 E-value=1e+02 Score=30.99 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCeEEEEcC--CCCCCC
Q 012613 29 NPMLQIASVLYSKGFSITIIHTNLNPLNACNYPHFEFHSIS--ASLSET 75 (460)
Q Consensus 29 ~p~~~La~~L~~rGh~V~~~~~~~~~~~~~~~~gi~~~~~~--~~~~~~ 75 (460)
.-.+.+|+.|.+.|+++. ++........+ .|+.+..+. .++|+.
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e-~GI~v~~Vsk~TgfPEi 56 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAE-AGVPVTEVSDYTGFPEM 56 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHH-CCCeEEEeecccCCchh
Confidence 446789999999999974 34333333322 577776665 355543
No 495
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=24.91 E-value=54 Score=26.80 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=40.9
Q ss_pred hHHHhHhcCCceeecccccchhhhHHHhhhhheeeEecCC-ccCHHHHHHHHHHHh
Q 012613 363 STLESICEGVPMICQPYLGDQMVNARYISHVWRLGLHLDG-NVERREIEIAVRRVM 417 (460)
Q Consensus 363 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~-~~~~~~l~~ai~~vl 417 (460)
||+|-+..--|+|+=--..=++++-..+.. |+-....+ .++.++|.+.+.++-
T Consensus 39 TTyErve~~~l~ViKkdG~re~Fdr~Kl~~--gl~~Ac~KRpVs~e~ie~~v~~Ie 92 (147)
T TIGR00244 39 TTFERAELLPPTVIKQDGVREPFNREKLLR--GMVRACEKRPVSFDDLEHAINHIE 92 (147)
T ss_pred ceeeeccccccEEEcCCCCCCCCCHHHHHH--HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 788888887777777766667888887776 77777777 888888888777663
No 496
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=24.85 E-value=90 Score=30.13 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 13 NGKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 13 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
.+++|+++-.|..| +..|-+|+++|++|+++-..
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecC
Confidence 46788999877767 89999999999999988654
No 497
>PRK12367 short chain dehydrogenase; Provisional
Probab=24.82 E-value=1.1e+02 Score=27.48 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=27.8
Q ss_pred ccccccCCC-CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012613 5 QESCRLPRN-GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHT 50 (460)
Q Consensus 5 ~~~~~~~~~-~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~ 50 (460)
|.+.+.+.+ +.+.++++.++. .--..+|++|+++|++|+++..
T Consensus 3 ~~~~~~~~~l~~k~~lITGas~---gIG~ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 3 QADPMAQSTWQGKRIGITGASG---ALGKALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred CcchhhHHhhCCCEEEEEcCCc---HHHHHHHHHHHHCCCEEEEEEC
Confidence 344444444 345556665553 2237889999999999988765
No 498
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=24.78 E-value=1.4e+02 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=18.4
Q ss_pred cCHHHHHHHHHHHHhCCCeE-EEEeC
Q 012613 26 GHINPMLQIASVLYSKGFSI-TIIHT 50 (460)
Q Consensus 26 GH~~p~~~La~~L~~rGh~V-~~~~~ 50 (460)
....-.+.+|+.+.+.||+| .++-.
T Consensus 15 ~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 15 QQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 34567788999999999995 55443
No 499
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=24.71 E-value=1.4e+02 Score=27.95 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.6
Q ss_pred CceEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLP-YQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~-~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
..+|+++-.. +.|-..-.+.|.++|.++|.++.|+.|.
T Consensus 112 ~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 112 AKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 5777777766 5599999999999999999999999986
No 500
>PRK06835 DNA replication protein DnaC; Validated
Probab=24.67 E-value=1.4e+02 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=31.9
Q ss_pred CceEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012613 14 GKRVILFPLPYQGHINPMLQIASVLYSKGFSITIIHTN 51 (460)
Q Consensus 14 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~V~~~~~~ 51 (460)
...++|+..++.|=..=+.++|++|.++|+.|.+++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 36688888778888888889999999999999988764
Done!