BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012615
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 154/344 (44%), Gaps = 46/344 (13%)
Query: 58 VITELGYPYEAIRVETSDGYVLLLERIP--RRDA-----RKAVYLQHGILDSSMGWVSNG 110
+IT GYP E V T DGY+L ++RIP R+++ R +LQHG+L S+ W+SN
Sbjct: 19 MITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNL 78
Query: 111 VVGSPAFAAYDQGYDVFLGNFRG-LVSREHVNKDISSRRYWKYSINEHGTEDIPAMIEKI 169
S AF D GYDV+LGN RG +R ++ S +W +S +E D+PA I+ I
Sbjct: 79 PNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFI 138
Query: 170 HEIKTSELKISQPDVKEEINEAQPYKLCAICHSLGGAAILMYVITCRIEEKPHRLSRLIL 229
LK + D KL + HS G + ++ + R+
Sbjct: 139 -------LKKTGQD-----------KLHYVGHSQG--TTIGFIAFSTNPKLAKRIKTFYA 178
Query: 230 LSPAGFHDDSTLVF--TVAEYLFLVSAPILAYIV-PAFYIPTKFFRMLLNKLARDFHNYP 286
L+P +T+ + T+ L LV + + I + P FF LA + +
Sbjct: 179 LAPV-----ATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQF---LATEVCSRE 230
Query: 287 AVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFRVAHHLAQMKHTGKFRMFDY 346
V L + + G D+ N + + L Y ++ G S + H +Q +GKF+ FD+
Sbjct: 231 TVDLLCSNALFIICGFDTMN-LNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDW 289
Query: 347 GSVRENMEVYGSPEPVDLGEYYRFID--IPVDLVAGRKDKVIRP 388
GS +NM Y P YY D +P+ + G D + P
Sbjct: 290 GSPVQNMMHYHQSMP----PYYNLTDMHVPIAVWNGGNDLLADP 329
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 149/347 (42%), Gaps = 46/347 (13%)
Query: 58 VITELGYPYEAIRVETSDGYVLLLERIP-------RRDARKAVYLQHGILDSSMGWVSNG 110
+IT GYP E V T DGY+L + RIP R V+LQHG+L S+ W+SN
Sbjct: 11 MITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWISNL 70
Query: 111 VVGSPAFAAYDQGYDVFLGNFRG-LVSREHVNKDISSRRYWKYSINEHGTEDIPAMIEKI 169
S AF D GYDV+LGN RG +R ++ S +W +S +E D+PA I+ I
Sbjct: 71 PNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFI 130
Query: 170 HEIKTSELKISQPDVKEEINEAQPYKLCAICHSLGGAAILMYVITCRIEEKPHRLSRLIL 229
+K + K +L + HS G + ++ R+
Sbjct: 131 --VKKTGQK----------------QLHYVGHSQG--TTIGFIAFSTNPSLAKRIKTFYA 170
Query: 230 LSPAGFHDDSTLVFT--VAEYLFLVSAPILAYIV-PAFYIPTKFFRMLLNKLARDFHNYP 286
L+P +T+ +T + L V + +I + P FF LA + +
Sbjct: 171 LAPV-----ATVKYTKSLINKLRFVPQSLFKFIFGDKIFYPHNFFDQF---LATEVCSRE 222
Query: 287 AVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFRVAHHLAQMKHTGKFRMFDY 346
+ L + + G DS N+ L Y ++ G S + H Q +GKF+ +D+
Sbjct: 223 MLNLLCSNALFIICGFDSKNF-NTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDW 281
Query: 347 GSVRENMEVYGSPEPVDLGEYYRF--IDIPVDLVAGRKDKVIRPSMV 391
GS +N Y +P YY +++P+ + G KD + P V
Sbjct: 282 GSPVQNRMHYDQSQP----PYYNVTAMNVPIAVWNGGKDLLADPQDV 324
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 363 DLGEYYRFIDIPVDLVAGRKDKVIRPSMVRKHYRLMKDSGVDVSYNEFEYAHLDFTFSHR 422
DL R IPV + G +D V+ P++ R + ++ GV+V ++++ H + +
Sbjct: 157 DLALDERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYPMGH-EVSLEEI 215
Query: 423 EELLAYVMSRL 433
++ A++ RL
Sbjct: 216 HDIGAWLRKRL 226
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 266 IPTKFFRMLLNKLARDFHNYPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVS 325
I T+F + + N L+RDF+ V L + S G + +++ + D+ G S
Sbjct: 39 IMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIAL---------DLGGSS 89
Query: 326 FRVAHHLAQMKHTGKFRMFDYGSVRENMEVYGSPEPVDLGEYYRFID 372
FR+ Q+ H +V EVY +PE + G + D
Sbjct: 90 FRILR--VQVNHEKN------QNVHMESEVYDTPENIVHGSGSQLFD 128
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 266 IPTKFFRMLLNKLARDFHNYPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVS 325
I T+F + + N L+RDF+ V L + S G + +++ + D+ G S
Sbjct: 39 IMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIAL---------DLGGSS 89
Query: 326 FRVAHHLAQMKHTGKFRMFDYGSVRENMEVYGSPEPVDLGEYYRFID 372
FR+ Q+ H +V EVY +PE + G + D
Sbjct: 90 FRILR--VQVNHEKN------QNVHMESEVYDTPENIVHGSGSQLFD 128
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 266 IPTKFFRMLLNKLARDFHNYPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVS 325
I T+F + + N L+RDF+ V L + S G + +++ + D+ G S
Sbjct: 39 IMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIAL---------DLGGSS 89
Query: 326 FRVAHHLAQMKHTGKFRMFDYGSVRENMEVYGSPEPVDLGEYYRFID 372
FR+ Q+ H +V EVY +PE + G + D
Sbjct: 90 FRILR--VQVNHEKN------QNVHMESEVYDTPENIVHGSGSQLFD 128
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 266 IPTKFFRMLLNKLARDFHNYPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVS 325
I T+F + + N L+RDF+ V L + S G + +++ + D+ G S
Sbjct: 39 IMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIAL---------DLGGSS 89
Query: 326 FRVAHHLAQMKHTGKFRMFDYGSVRENMEVYGSPEPVDLGEYYRFID 372
FR+ Q+ H +V EVY +PE + G + D
Sbjct: 90 FRILR--VQVNHEKN------QNVHMESEVYDTPENIVHGSGSQLFD 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,681,493
Number of Sequences: 62578
Number of extensions: 640529
Number of successful extensions: 1389
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1373
Number of HSP's gapped (non-prelim): 15
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)