BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012618
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 17/165 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA NG VK LIE+GA + DS GRT LHYAA GH + ++ L++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHYAAKEGHKEIVKLLISKGAD---- 62
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
VN +D G TPLH AA++G E V L+ GA + G TPLH+A
Sbjct: 63 --------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----SDGRTPLHYA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
A+ G E ++ L++ GAD D+ GR P +A ++ ++ LL
Sbjct: 111 AKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
L A ENG+ ++ ++E V S ++ LH AA G E++ +L+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQA 134
D+ R TPL AA G VK LI GA + DS GRT LHYAA GH + ++
Sbjct: 66 KDSDGR---TPLHYAAKEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKL 121
Query: 135 LLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
L++ VN D G TPL LA G E V L G
Sbjct: 122 LISKGAD------------VNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D G TPLH AA++G E V L+ GA + G TPLH+AA+ G E
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----SDGRTPLHYAAKEGHKEI 85
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
++ L++ GAD D+ GR P A K H+ LL A+
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AA G + V L++NGA +S G TPLH+AA+ G E ++ L++ GAD
Sbjct: 11 AAENGNKDRVKDLIENGADVNASD----SDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
D+ GR P A K H+ LL A+
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + N G T LH AA GH + ++ LL A
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---- 60
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
VN +D+ G TPLHLAAR+G E V LL GA ++ +GY TPLH A
Sbjct: 61 --------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGY---TPLHLA 108
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
AR G LE + LL GAD D FG+ P+ +A++ H+ A +L ++
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A ++ TPL +AA G L V+ L+++GA + N G T LH AA GH + ++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVE 85
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
LL A VN +D+ G TPLHLAAR+G E V LL GA
Sbjct: 86 VLLKAGAD------------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNA 129
Query: 194 NGYPGSTPLHFAARGGSLECIRELLAWGA 222
G TP A R G E I E+L A
Sbjct: 130 QDKFGKTPFDLAIREGH-EDIAEVLQKAA 157
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 130 DCLQALLTAART---SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
D + LL AAR V VN +D+ G TPLHLAAR+G E V LL GA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA- 59
Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
++ +GY TPLH AAR G LE + LL GAD D G P +A + H
Sbjct: 60 DVNAKDKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 247 AALLNPSSAE 256
+L + A+
Sbjct: 117 VEVLLKAGAD 126
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G +E++ +LL + +A ++ TPL +AA G L V+ L+++GA +
Sbjct: 39 LHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV- 94
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
N G T LH AA GH + ++ LL A VN +D+ G TP LA
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------------VNAQDKFGKTPFDLAI 142
Query: 170 RQGWSECVHTL 180
R+G + L
Sbjct: 143 REGHEDIAEVL 153
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA NG VK L+E+GA + DS G+T LH AA GH + ++ LL+ P
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDS-DGKTPLHLAAENGHKEVVKLLLSQG-ADP-- 63
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
N +D G TPLHLAA G E V LL GA + G TPLH A
Sbjct: 64 ---------NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD----SDGKTPLHLA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
A G E ++ LL+ GAD D+ GR P +A ++ ++ LL
Sbjct: 111 AENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D G TPLHLAA G E V LL GA + G TPLH AA G E
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD----SDGKTPLHLAAENGHKEV 85
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
++ LL+ GAD D+ G+ P +A + H+ LL A+P
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
L A ENG+ ++ ++E V S ++ LHLAA G EV+ +LL Q +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADV--NASDSDGKTPLHLAAENGHKEVVKLLLSQG---AD 62
Query: 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQA 134
+A + +TPL +AA NG VK L+ GA DS G+T LH AA GH + ++
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS-DGKTPLHLAAENGHKEVVKL 121
Query: 135 LLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
LL+ P N D G TPL LA G E V L G
Sbjct: 122 LLSQG-ADP-----------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AA G + V LL+NGA +S G TPLH AA G E ++ LL+ GAD
Sbjct: 11 AAENGNKDRVKDLLENGADVNASD----SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAEP 257
D+ G+ P +A + H+ LL A+P
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA NG VK LIE+GA + DS GRT LH+AA GH + ++ L++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLISKGAD---- 62
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
VN +D G TPLH AA G E V L+ GA + G TPLH A
Sbjct: 63 --------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----SDGRTPLHHA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
A G E ++ L++ GAD D+ GR P +A ++ ++ LL
Sbjct: 111 AENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
L A ENG+ ++ ++E V S ++ LH AA G EV+ +L+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQA 134
D+ R TPL AA NG VK LI GA + DS GRT LH+AA GH + ++
Sbjct: 66 KDSDGR---TPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKL 121
Query: 135 LLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
L++ VN D G TPL LA G E V L G
Sbjct: 122 LISKGAD------------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + N G T LH AA GH + ++ LL A
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---- 60
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
VN +D+ G TPLHLAAR+G E V LL GA ++ +GY TPLH A
Sbjct: 61 --------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGY---TPLHLA 108
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
AR G LE + LL GAD D FG+ P+ +A+ ++ A +L ++
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 130 DCLQALLTAART---SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
D + LL AAR V VN +D+ G TPLHLAAR+G E V LL GA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA- 59
Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
++ +GY TPLH AAR G LE + LL GAD D G P +A + H
Sbjct: 60 DVNAKDKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 247 AALLNPSSAE 256
+L + A+
Sbjct: 117 VEVLLKAGAD 126
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A ++ TPL +AA G L V+ L+++GA + N G T LH AA GH + ++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVE 85
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
LL A VN +D+ G TPLHLAAR+G E V LL GA
Sbjct: 86 VLLKAGAD------------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNA 129
Query: 194 NGYPGSTPLHFAARGGSLECIRELLAWGA 222
G TP A G+ E I E+L A
Sbjct: 130 QDKFGKTPFDLAIDNGN-EDIAEVLQKAA 157
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G +E++ +LL + +A ++ TPL +AA G L V+ L+++GA +
Sbjct: 39 LHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV- 94
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
N G T LH AA GH + ++ LL A VN +D+ G TP LA
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------------VNAQDKFGKTPFDLAI 142
Query: 170 RQGWSECVHTL 180
G + L
Sbjct: 143 DNGNEDIAEVL 153
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA NG VK L+E+GA DS GRT LHYAA GH + ++ LL+ P
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDS-DGRTPLHYAAENGHKEIVKLLLSKG-ADP-- 63
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
N +D G TPLH AA G E V LL GA + G TPLH+A
Sbjct: 64 ---------NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD----SDGRTPLHYA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
A G E ++ LL+ GAD D+ GR P +A ++ ++ LL
Sbjct: 111 AENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 15 LFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
L A ENG+ ++ ++E ADP S ++ LH AA G E++ +LL +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNA----SDSDGRTPLHYAAENGHKEIVKLLLSKGADP 63
Query: 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
D+ R TPL AA NG VK L+ GA DS GRT LHYAA GH + +
Sbjct: 64 NAKDSDGR---TPLHYAAENGHKEIVKLLLSKGADPNAKDS-DGRTPLHYAAENGHKEIV 119
Query: 133 QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
+ LL+ P N D G TPL LA G E V L G
Sbjct: 120 KLLLSKG-ADP-----------NTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
N D G TPLH AA G E V LL GA + G TPLH+AA G E +
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD----SDGRTPLHYAAENGHKEIV 86
Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
+ LL+ GAD D+ GR P A + H+ LL A+P
Sbjct: 87 KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AA G + V LL+NGA +S G TPLH+AA G E ++ LL+ GAD
Sbjct: 11 AAENGNKDRVKDLLENGADPNASD----SDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAEP 257
D+ GR P A + H+ LL A+P
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADP 96
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N G T LH AA++GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN +D G TPLHLAAR+G E V LL NGA +S G TPLH
Sbjct: 73 ---------VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD----SHGFTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA+ G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAARTS---PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN RD +G TPLHLAA G E V LL NGA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
G TPLH AAR G LE + LL GAD D+ G P +A K H
Sbjct: 72 ----DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
Query: 246 CAALLNPSSAE 256
+L + A+
Sbjct: 128 IVEVLLKNGAD 138
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
TPL +AA G L V+ L+++GA + DSL G T LH AA GH + ++ LL
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSL-GVTPLHLAARRGHLEIVEVLLKNGAD-- 105
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN D G TPLHLAA++G E V LL NGA
Sbjct: 106 ----------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA +G +E++ +LL + +A + TPL +AA G L V+ L+++GA +
Sbjct: 51 LHLAAHFGHLEIVEVLLKN---GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
DS G T LH AA GH + ++ LL + +G + F
Sbjct: 108 ASDS-HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N G T LH AA GH + ++ LL A
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN +D+ G TPLHLAAR+G E V LL GA ++ +GY TPLH
Sbjct: 73 ---------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGY---TPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AAR G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAART---SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN +D+ G TPLHLAAR+G E V LL GA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
++ +GY TPLH AAR G LE + LL GAD D G P +A + H
Sbjct: 72 -DVNAKDKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLE 127
Query: 246 CAALLNPSSAE 256
+L + A+
Sbjct: 128 IVEVLLKAGAD 138
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A ++ TPL +AA G L V+ L+++GA + N G T LH AA GH + ++
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVE 97
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
LL A VN +D+ G TPLHLAAR+G E V LL GA
Sbjct: 98 VLLKAGAD------------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G +E++ +LL + +A ++ TPL +AA G L V+ L+++GA +
Sbjct: 51 LHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV- 106
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
N G T LH AA GH + ++ LL A + +G + F
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 82/166 (49%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + D + G T LH AAY+GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D G TPLHLAA +G E V LL NGA N + G TPLH
Sbjct: 73 ---------VNADDSLGVTPLHLAADRGHLEVVEVLLKNGA----DVNANDHNGFTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 120 AANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAART---SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN D G TPLHLAA G E V LL NGA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
+ G TPLH AA G LE + LL GAD D G P +A H
Sbjct: 72 ----DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 246 CAALLNPSSAE 256
+L A+
Sbjct: 128 IVEVLLKHGAD 138
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
TPL +AA G L V+ L+++GA + DSL G T LH AA GH + ++ LL
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSL-GVTPLHLAADRGHLEVVEVLLKNGAD-- 105
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN D +G TPLHLAA G E V LL +GA
Sbjct: 106 ----------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA +G +E++ +LL + +A + TPL +AA G L V+ L+++GA +
Sbjct: 51 LHLAAYFGHLEIVEVLLKN---GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV- 106
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
N + G T LH AA GH + ++ LL + +G + F
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.4 bits (215), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/139 (41%), Positives = 79/139 (56%), Gaps = 16/139 (11%)
Query: 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
++ LHLAA G +EV+ +LL+ + +A ++ +TPL +AA NG L VK L+E+GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
+ N GRT LH AA GH + ++ LL A VN +D++G TPLH
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLH 106
Query: 167 LAARQGWSECVHTLLDNGA 185
LAAR G E V LL+ GA
Sbjct: 107 LAARNGHLEVVKLLLEAGA 125
Score = 84.0 bits (206), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/140 (40%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
GRT LH AA GH + ++ LL A VN +D++G TPLHLAAR G E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLE 49
Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
V LL+ GA G TPLH AAR G LE ++ LL GAD D GR P
Sbjct: 50 VVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105
Query: 236 AIALKYKHQACAALLNPSSA 255
+A + H LL + A
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
+G TPLHLAAR G E V LL+ GA G TPLH AAR G LE ++ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 220 WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
GAD D GR P +A + H LL + A+
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
+ L +A NG L++++ ++EA V ++ LHLAA G +EV+ +LL+
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEA---G 91
Query: 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ +A ++ +TPL +AA NG L VK L+E+GA+
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N + G T LH AA GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D SG+TPLHLAA++G E V LL GA + GSTPLH
Sbjct: 73 ---------VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA----DVNADDTIGSTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL +GAD D FG+ + I++ ++ A +L
Sbjct: 120 AADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A + Y TPL +AA G L V+ L+++GA + D G T LH AA GH + ++
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD-FSGSTPLHLAAKRGHLEIVE 97
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
LL + VN D G+TPLHLAA G E V LL GA
Sbjct: 98 VLLK------------YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
YG + LHLAA G +E++ +LL + +AL+ TPL +AA G L V+ L++
Sbjct: 46 YG-DTPLHLAARVGHLEIVEVLLKNG---ADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163
GA + N D G T LH AA GH + ++ LL + VN +D+ G T
Sbjct: 102 YGADV-NADDTIGSTPLHLAADTGHLEIVEVLLK------------YGADVNAQDKFGKT 148
Query: 164 PLHLAARQGWSECVHTL 180
++ G + L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
AAR G + +R L+A GAD D +G P +A + H +L + A+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N + G T LH AAY+GH + ++ LL
Sbjct: 17 KLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D G+TPLHLAA G E V LL NGA ++ NG TPLH
Sbjct: 73 ---------VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA-DVNAKDDNGI---TPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL +GAD D FG+ + I++ ++ A +L
Sbjct: 120 AANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 13/102 (12%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
TPL +AA G L V+ L+++GA + +D+L G T LH AA++GH + ++ LL
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTL-GSTPLHLAAHFGHLEIVEVLLKNGAD-- 105
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN +D++G TPLHLAA +G E V LL GA
Sbjct: 106 ----------VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA ++ G TPLH AA G LE + LL GAD
Sbjct: 21 AARAGRDDEVRILMANGADVNAAD----VVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
D G P +A + H +L + A+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 15 LFVAVENGDLQMIEAMVEADPTV-----LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
L +A G L+++E +++ V LG T LHLAA +G +E++ +LL
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTP-------LHLAAHFGHLEIVEVLLKNG 103
Query: 70 FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
+ +A + TPL +AA G L V+ L++ GA + D G+T + G+
Sbjct: 104 ---ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF-GKTAFDISINNGNE 159
Query: 130 DCLQAL 135
D + L
Sbjct: 160 DLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + D L G T LH AA GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLLK------- 68
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
+ VN D GATPLHLAA G E V LL +GA Y G TPLH
Sbjct: 69 -----YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA----DVNAKDYEGFTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL +GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G +E++ +LL + +A + Y TPL +AA NG L V+ L++ GA +
Sbjct: 51 LHLAAKTGHLEIVEVLLKYG---ADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV- 106
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
N +G T LH AAY GH + ++ LL + VN +D+ G T ++
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLK------------YGADVNAQDKFGKTAFDISI 154
Query: 170 RQGWSECVHTL 180
G + L
Sbjct: 155 DNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA ++ + G TPLH AA+ G LE + LL +GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNATD----WLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
D +G P +A H +L A+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW---- 260
AAR G + +R L+A GAD D G P +A K H +L A+ W
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 261 --PLQL 264
PL L
Sbjct: 81 ATPLHL 86
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N + G+T LH AA GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D+ G TPLHLAA G E V LL NGA ++T G+ TPLH
Sbjct: 73 ---------VNAADKMGDTPLHLAALYGHLEIVEVLLKNGA-DVNATDTYGF---TPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL +GAD D FG+ + I++ ++ A +L
Sbjct: 120 AADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
++ LHLAA G +E++ +LL + +A ++ TPL +AA+ G L V+ L+++GA
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKHG---ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
+ N G T LH AA GH + ++ LL + VN +D+ G T
Sbjct: 105 DV-NATDTYGFTPLHLAADAGHLEIVEVLLK------------YGADVNAQDKFGKTAFD 151
Query: 167 LAARQGWSECVHTL 180
++ G + L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA + G TPLH AA G LE + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDD----SGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
D G P +A Y H +L + A+
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGAD 105
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 9 ERSESALFVAVENGDLQMIEAMVEAD--PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
++ + L VA + G +++ E ++E D P +G + LH+A + ++++ +LL
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPN----AAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 67 DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
+ ++ A N Y TPL +AA ++ + L++ G N +S+QG T LH AA
Sbjct: 200 PRGG-SPHSPAWNGY--TPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQE 255
Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
GH++ + LL S AN N+ ++SG TPLHL A++G L+ +G +
Sbjct: 256 GHAEMVALLL-----SKQANG-------NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
++T G TPLH A+ G+++ ++ LL AD G P A + H
Sbjct: 304 VDATT----RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359
Query: 247 AALLNPSSAEP 257
LL + A P
Sbjct: 360 VTLLLKNGASP 370
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 113/259 (43%), Gaps = 35/259 (13%)
Query: 15 LFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
L VA G L +++ +++ A P V S ++ LH+AA G EV LL
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNV----SNVKVETPLHMAARAGHTEVAKYLLQN---K 70
Query: 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
+A + QTPL AA G + VK L+E+ A N + G T LH AA GH + +
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETV 129
Query: 133 QALL---------TAARTSP--VANTWGFSRFVNI---RD-------ESGATPLHLAARQ 171
ALL T +P VA +G R + RD ++G TPLH+A
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189
Query: 172 GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231
+ V LL G + S NGY TPLH AA+ +E R LL +G G
Sbjct: 190 NNLDIVKLLLPRGG-SPHSPAWNGY---TPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 232 RIPYAIALKYKHQACAALL 250
P +A + H ALL
Sbjct: 246 VTPLHLAAQEGHAEMVALL 264
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
TPL VA+ G L VK L++ GA N +++ T LH AA GH++ + LL
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-- 72
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
VN + + TPLH AAR G + V LL+N A +T G TPLH
Sbjct: 73 ----------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA----GHTPLH 118
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
AAR G +E + LL A + G P +A KY A LL A P
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 33/225 (14%)
Query: 15 LFVAVENGDLQMIEAMVEADPTVLGMTS-GYGKQSALHLAAAYGQIEVLSMLLDQFFLYT 73
L +A G ++ + A++E + + MT G+ + LH+AA YG++ V +LL++
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGF---TPLHVAAKYGKVRVAELLLERD---A 170
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A + TPL VA + L VK L+ G + + G T LH AA + +
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVAR 229
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD---NGALACSS 190
+LL +G S N G TPLHLAA++G +E V LL NG L S
Sbjct: 230 SLLQ----------YGGS--ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Query: 191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
G TPLH A+ G + L+ G V DA R+ Y
Sbjct: 278 -------GLTPLHLVAQEGHVPVADVLIKHG---VMVDATTRMGY 312
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LH+A+ G + ++ LL + + + N +TPL +AA G K L+++ A +
Sbjct: 18 LHVASFMGHLPIVKNLLQRG---ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV- 73
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
N + +T LH AA GH++ ++ LL +A T +G TPLH+AA
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT------------AGHTPLHIAA 121
Query: 170 RQGWSECVHTLLDNGA-LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD 228
R+G E V LL+ A AC + G TPLH AA+ G + LL A P+
Sbjct: 122 REGHVETVLALLEKEASQACMTK-----KGFTPLHVAAKYGKVRVAELLLERDA---HPN 173
Query: 229 AFGR---IPYAIALKYKHQACAALLNPSSAEP 257
A G+ P +A+ + + LL P P
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G E++++LL + N + N+ TPL + A G + LI+ G +
Sbjct: 249 LHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV- 304
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
+ + G T LH A++YG+ ++ LL VN + + G +PLH AA
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQ------------HQADVNAKTKLGYSPLHQAA 352
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
+QG ++ V LL NGA S G+TPL A R G +
Sbjct: 353 QQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIAKRLGYISV 392
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + D QG T LH AA+ GH + ++ LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLLKHGAD---- 72
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
VN RD G TPLHLAA G E V LL GA + + Y G TPLH A
Sbjct: 73 --------VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ---DAY-GLTPLHLA 120
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
A G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 121 ADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAART---SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN D+ G+TPLHLAA G E V LL +GA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
G TPLH AA G LE + LL +GAD DA+G P +A H
Sbjct: 72 ----DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLE 127
Query: 246 CAALLNPSSAE 256
+L A+
Sbjct: 128 IVEVLLKHGAD 138
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G E++ +LL + +A + TPL +AA NG L V+ L++ GA +
Sbjct: 51 LHLAAWIGHPEIVEVLLKHG---ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV- 106
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
N G T LH AA GH + ++ LL + +G + F
Sbjct: 107 NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N + G T LH GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLK------- 68
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
++ VN D+SG TPLHLAA +G E V LL GA Y G TPLH
Sbjct: 69 -----YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA----DVNAMDYQGYTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL +GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
L +A G L+++E +++ V M Y + LHLAA G +E++ +LL +
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGADVNAMD--YQGYTPLHLAAEDGHLEIVEVLLKYG---AD 138
Query: 75 TDALNRYKQTPLMVAAMNG 93
+A +++ +T ++ NG
Sbjct: 139 VNAQDKFGKTAFDISIDNG 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N + G T LH AA+ GH + ++ LL
Sbjct: 17 KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D +G TPL LAA G E V LL NGA N G TPLH
Sbjct: 73 ---------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA----DVNANDMEGHTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAARTS---PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN D SG TPLHLAA G E V LL NGA
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
+ + G TPL AA G LE + LL GAD D G P +A + H
Sbjct: 72 DVNAVD----HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 246 CAALLNPSSAE 256
+L + A+
Sbjct: 128 IVEVLLKNGAD 138
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
TPL +AA NG L V+ L+++GA + D G T L AA +GH + ++ LL
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKNGAD-- 105
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN D G TPLHLAA G E V LL NGA
Sbjct: 106 ----------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G +E++ +LL + +A++ TPL +AA+ G L V+ L+++GA +
Sbjct: 51 LHLAAFNGHLEIVEVLLKN---GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV- 106
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
N + ++G T LH AA +GH + ++ LL + +G + F
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ LI +GA + D+ G T LH AA GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
A+ +GF TPLHLAA G E V LL GA GSTPLH
Sbjct: 76 ADVYGF------------TPLHLAAMTGHLEIVEVLLKYGA----DVNAFDMTGSTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACA 247
AA G LE + LL +GAD D FG+ + I++ ++ A
Sbjct: 120 AADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 129 SDCLQALLTAARTSP-------VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLL 181
SD + LL AAR +AN VN D +G TPLHLAA G E V LL
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGAD----VNAVDNTGLTPLHLAAVSGHLEIVEVLL 67
Query: 182 DNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY 241
+GA ++ G TPLH AA G LE + LL +GAD D G P +A
Sbjct: 68 KHGADVDAAD----VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
Query: 242 KHQACAALL 250
H +L
Sbjct: 124 GHLEIVEVL 132
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G +E++ +LL + DA + Y TPL +AAM G L V+ L++ GA +
Sbjct: 51 LHLAAVSGHLEIVEVLLKH---GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
FD + G T LH AA GH + ++ LL + +G + F
Sbjct: 108 AFD-MTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + D+ G T LH AAY GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
++ +G+ TPLHLAA G E V LL NGA + G TPLH
Sbjct: 76 SDVFGY------------TPLHLAAYWGHLEIVEVLLKNGADVNAMDS----DGMTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA+ G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAARTS---PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN D +G TPLHLAA G E V LL +GA
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
+S G TPLH AA G LE + LL GAD D+ G P +A K+ +
Sbjct: 72 DVDASD----VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLE 127
Query: 246 CAALLNPSSAE 256
+L A+
Sbjct: 128 IVEVLLKHGAD 138
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA G +E++ +LL + DA + + TPL +AA G L V+ L+++GA +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHG---ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
DS G T LH AA +G+ + ++ LL + +G + F
Sbjct: 108 AMDS-DGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + D+ G T LH AA GH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP--GSTPL 202
VN D +G TPLHLAA G E V LL +GA N Y G TPL
Sbjct: 73 ---------VNASDLTGITPLHLAAATGHLEIVEVLLKHGADV------NAYDNDGHTPL 117
Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
H AA+ G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 118 HLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAART---SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN D G TPLHLAA G E V LL NGA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
+S G TPLH AA G LE + LL GAD D G P +A KY H
Sbjct: 72 DVNASD----LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
Query: 246 CAALLNPSSAE 256
+L A+
Sbjct: 128 IVEVLLKHGAD 138
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
TPL +AA NG L V+ L+++GA + N L G T LH AA GH + ++ LL
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLKHGAD-- 105
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN D G TPLHLAA+ G E V LL +GA
Sbjct: 106 ----------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA+ G +E++ +LL + +A + TPL +AA G L V+ L++ GA +
Sbjct: 51 LHLAASNGHLEIVEVLLKNG---ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
+D+ G T LH AA YGH + ++ LL + +G + F
Sbjct: 108 AYDN-DGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
L +A G L+++E +++ V + + LHLAA YG +E++ +LL +
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDND--GHTPLHLAAKYGHLEIVEVLLKHG---AD 138
Query: 75 TDALNRYKQTPLMVAAMNGK 94
+A +++ +T ++ NG
Sbjct: 139 VNAQDKFGKTAFDISIDNGN 158
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 92/206 (44%), Gaps = 19/206 (9%)
Query: 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
K+S LH AA G +++ ML+ N D + ++TPLM AA N L VK LI++
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAG---ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 105 GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164
GA + D+ +G TCLH AA GH + +Q LL+ + VN +D+ G TP
Sbjct: 67 GALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMD-----------VNCQDDGGWTP 114
Query: 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADR 224
+ A + V LL G S + LH+AA G ++ LLA D
Sbjct: 115 MIWATEYKHVDLVKLLLSKG----SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 225 VQPDAFGRIPYAIALKYKHQACAALL 250
+ G P IA + C L
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLF 196
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 6 SCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSML 65
+C E + L A EN L+ ++ +++A V G + LHLAA G EV+ L
Sbjct: 39 TCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGS-TCLHLAAKKGHYEVVQYL 96
Query: 66 LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
L + N + TP++ A + VK L+ G+ I N + CLH+AA+
Sbjct: 97 LSNGQMDVNCQDDGGW--TPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAF 153
Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
G D + LL AA+ A VNI G +PLH+AAR+ +CV L
Sbjct: 154 SGCVDIAEILL-AAKCDLHA--------VNIH---GDSPLHIAARENRYDCVVLFLSRD- 200
Query: 186 LACSSTGGNGYPGSTPLHFAA 206
S G TPL A+
Sbjct: 201 ---SDVTLKNKEGETPLQCAS 218
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N G T LH AA YGH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D G+TPLHLAA G E V LL +GA + G TPLH
Sbjct: 73 ---------VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD----TWGDTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAARTS---PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN D SG TPLHLAA G E V LL +GA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
GSTPLH AA G LE + LL GAD D +G P +A H
Sbjct: 72 ----DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 246 CAALLNPSSAE 256
+L A+
Sbjct: 128 IVEVLLKHGAD 138
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA YG +E++ +LL + +A++ TPL +AA+ G L V+ L++ GA +
Sbjct: 51 LHLAATYGHLEIVEVLLKH---GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
D+ G T LH AA GH + ++ LL + +G + F
Sbjct: 108 AVDT-WGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA + N G T LH AA YGH + ++ LL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D G+TPLHLAA G E V LL +GA + G TPLH
Sbjct: 73 ---------VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD----TWGDTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 129 SDCLQALLTAARTS---PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
SD + LL AAR V VN D SG TPLHLAA G E V LL +GA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
GSTPLH AA G LE + LL GAD D +G P +A H
Sbjct: 72 ----DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 246 CAALLNPSSAE 256
+L A+
Sbjct: 128 IVEVLLKHGAD 138
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
LHLAA YG +E++ +LL + +A++ TPL +AA+ G L V+ L++ GA +
Sbjct: 51 LHLAATYGHLEIVEVLLKH---GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
D+ G T LH AA GH + ++ LL + +G + F
Sbjct: 108 AVDT-WGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
L+ AA G+ V+ L+ +GA +D GRT LH AA GH + ++ LL
Sbjct: 5 KLLEAARAGQDDEVRILMANGADANAYDH-YGRTPLHMAAAVGHLEIVEVLLRNGAD--- 60
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
VN D +G TPLHLAA G E V LL GA + G TPL+
Sbjct: 61 ---------VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDA----TGITPLYL 107
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL GAD D FG+ + I++ ++ A +L
Sbjct: 108 AAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A + Y +TPL +AA G L V+ L+ +GA + D+ G T LH AA GH + ++
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT-NGTTPLHLAASLGHLEIVE 85
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
LL + VN +D +G TPL+LAA G E V LL +GA
Sbjct: 86 VLLK------------YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
N D G TPLH+AA G E V LL NGA ++ NG +TPLH AA G LE +
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA-DVNAVDTNG---TTPLHLAASLGHLEIV 84
Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
LL +GAD DA G P +A + H +L A+
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
YG+ + LH+AAA G +E++ +LL + +A++ TPL +AA G L V+ L++
Sbjct: 34 YGR-TPLHMAAAVGHLEIVEVLLRNG---ADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
GA + N G T L+ AAY+GH + ++ LL + +G + F
Sbjct: 90 YGADV-NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQL 264
AAR G + +R L+A GAD D +GR P +A H +L L
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVL-------------L 55
Query: 265 RNMTDLN 271
RN D+N
Sbjct: 56 RNGADVN 62
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 72.4 bits (176), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 58/103 (56%), Gaps = 13/103 (12%)
Query: 83 QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
+TPL +AA NG L VK L+E+GA + N GRT LH AA GH + ++ LL A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN +D++G TPLHLAAR G E V LL+ GA
Sbjct: 61 -----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 72.0 bits (175), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
GRT LH AA GH + ++ LL A VN +D++G TPLHLAAR G E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLE 49
Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
V LL+ GA G TPLH AAR G LE ++ LL GA
Sbjct: 50 VVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
+G TPLHLAAR G E V LL+ GA G TPLH AAR G LE ++ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 220 WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255
GAD D GR P +A + H LL + A
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
++ LHLAA G +EV+ +LL+ + +A ++ +TPL +AA NG L VK L+E+GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA 139
+ N GRT LH AA GH + ++ LL A
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
+ L +A NG L++++ ++EA V ++ LHLAA G +EV+ +LL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEA---G 58
Query: 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ +A ++ +TPL +AA NG L VK L+E+GA+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
G TPLH AAR G LE ++ LL GAD D GR P +A + H LL + A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + N G T LH AA G + ++ LL
Sbjct: 10 LLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGAD---- 64
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP--GSTPLH 203
VN D +G TPLHLAA G E V LL +GA N Y G TPLH
Sbjct: 65 --------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV------NAYDRAGWTPLH 110
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
AA G LE + LL GAD DA G + I++ + A +L
Sbjct: 111 LAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA GQ + + +L+ + +A + TPL +AA NG+L V+ L+++GA + D
Sbjct: 13 AAAAGQDDEVRILMANG---ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
S G T LH AAY GH + ++ LL VN D +G TPLHLAA G
Sbjct: 70 S-AGITPLHLAAYDGHLEIVEVLLK------------HGADVNAYDRAGWTPLHLAALSG 116
Query: 173 WSECVHTLLDNGA 185
E V LL +GA
Sbjct: 117 QLEIVEVLLKHGA 129
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
L +A NG L+++E +++ V S + LHLAA G +E++ +LL +
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADV--NASDSAGITPLHLAAYDGHLEIVEVLLKHG---AD 97
Query: 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQA 134
+A +R TPL +AA++G+L V+ L++ GA + D+L G T + G D +
Sbjct: 98 VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDAL-GLTAFDISINQGQEDLAEI 156
Query: 135 L 135
L
Sbjct: 157 L 157
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 60 EVLSMLLDQFFLYTNTDALNRYK----QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQ 115
E++ + D+ + N D L Y+ +TPLMVA M G + + KL+E NFD L+
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE------NFDKLE 62
Query: 116 -----GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170
G T L +A + LL+ VN +D SG TPL +
Sbjct: 63 DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------------VNTKDFSGKTPLMWSII 110
Query: 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
G+SE + LL++GA + G TPL A++ G E +++LL GAD D
Sbjct: 111 FGYSEMSYFLLEHGA----NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLT 166
Query: 231 GRIPYAIALKYKHQACAALL 250
G A A + Q +
Sbjct: 167 GLTAEASARIFGRQEVIKIF 186
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
+AL AV+N L + E ++ V T + ++ L + +G E+ LL+
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNV--NTKDFSGKTPLMWSIIFGYSEMSYFLLEH---G 124
Query: 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
N + N +TPL+VA+ G+ VKKL+E GA I D L G T A +G + +
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD-LTGLTAEASARIFGRQEVI 183
Query: 133 QALLTAAR 140
+ R
Sbjct: 184 KIFTEVRR 191
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 69.3 bits (168), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D++G TPLHLAA++G E V LL +GA +S G TPLH AA G LE
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW----GRTPLHLAATVGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ LL +GAD D FG+ + I++ ++ A +L
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
A R G + V L+ NGA G TPLH AA+ G LE + LL GAD
Sbjct: 21 ATRAGQDDEVRILMANGA----DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 228 DAFGRIPYAIALKYKH 243
D++GR P +A H
Sbjct: 77 DSWGRTPLHLAATVGH 92
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ A G+ V+ L+ +GA + D G T LH AA GH + ++ LL +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDD-AGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
++W G TPLHLAA G E V LL+ GA
Sbjct: 77 DSW------------GRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ LHLAA G +E++ +LL + +A + + +TPL +AA G L V+ L+E GA
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKH---GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
+ D G+T + G+ D + L
Sbjct: 106 VNAQDKF-GKTAFDISIDNGNEDLAEIL 132
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
+ L +A + G L+++E +++ V + +G+ + LHLAA G +E++ +LL+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGR-TPLHLAATVGHLEIVEVLLE---YG 103
Query: 73 TNTDALNRYKQTPLMVAAMNG 93
+ +A +++ +T ++ NG
Sbjct: 104 ADVNAQDKFGKTAFDISIDNG 124
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 68.9 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D++G TPLHLAA++G E V LL +GA + G TPLH AA G LE
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA----DVNASDIWGRTPLHLAATVGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ LL +GAD D FG+ + I++ ++ A +L
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A++ TPL +AA G L V+ L++ GA + N + GRT LH AA GH + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVE 97
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
LL + VN +D+ G T ++ G
Sbjct: 98 VLLE------------YGADVNAQDKFGKTAFDISIDNG 124
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
+ L +A + G L+++E +++ V S ++ LHLAA G +E++ +LL+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV--NASDIWGRTPLHLAATVGHLEIVEVLLE---YG 103
Query: 73 TNTDALNRYKQTPLMVAAMNG 93
+ +A +++ +T ++ NG
Sbjct: 104 ADVNAQDKFGKTAFDISIDNG 124
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 68.6 bits (166), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D++G TPLHLAA++G E V LL +GA G TPLH AA G LE
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA----DVNARDIWGRTPLHLAATVGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ LL +GAD D FG+ + I++ ++ A +L
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A++ TPL +AA G L V+ L++ GA + N + GRT LH AA GH + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVE 97
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
LL + VN +D+ G T ++ G
Sbjct: 98 VLLE------------YGADVNAQDKFGKTAFDISIDNG 124
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
+ L +A + G L+++E +++ V +G+ + LHLAA G +E++ +LL+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGR-TPLHLAATVGHLEIVEVLLE---YG 103
Query: 73 TNTDALNRYKQTPLMVAAMNG 93
+ +A +++ +T ++ NG
Sbjct: 104 ADVNAQDKFGKTAFDISIDNG 124
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D G TPLHLAA G E V LL NGA G G TPLH AA LE
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA----DVNATGNTGRTPLHLAAWADHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ LL GAD D FG+ + I++ ++ A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L NGA N Y G TPLH AA G LE + LL GAD
Sbjct: 21 AARAGQDDEVRILTANGA----DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 228 DAFGRIPYAIALKYKH 243
GR P +A H
Sbjct: 77 GNTGRTPLHLAAWADH 92
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L +GA + N + G T LH AA GH + ++ LL
Sbjct: 18 LLEAARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---- 72
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN +G TPLHLAA E V LL +GA
Sbjct: 73 --------VNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 74 NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
+ +A + + TPL +AAM G L V+ L+++GA + N GRT LH AA+ H + ++
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVE 97
Query: 134 ALLTAARTSPVANTWGFSRF 153
LL + +G + F
Sbjct: 98 VLLKHGADVNAQDKFGKTAF 117
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
Y + LHLAA G +E++ +LL + +A +TPL +AA L V+ L++
Sbjct: 45 YWGHTPLHLAAMLGHLEIVEVLLKN---GADVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Query: 104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
GA + D G+T + G+ D + L
Sbjct: 102 HGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN DE G TPLHLAA+ G E V LL GA G TPLH AA G LE
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA----DVNAEDNFGITPLHLAAIRGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ LL GAD D FG+ + I++ ++ A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + D G T LH AA GH + ++ LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDE-DGLTPLHLAAQLGHLEIVEVLLK-------- 68
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
+ VN D G TPLHLAA +G E V LL +GA
Sbjct: 69 ----YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA G TPLH AA+ G LE + LL +GAD
Sbjct: 21 AARAGQDDEVRILMANGA----DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 228 DAFGRIPYAIALKYKH 243
D FG P +A H
Sbjct: 77 DNFGITPLHLAAIRGH 92
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ LHLAA G +E++ +LL + +A + + TPL +AA+ G L V+ L++ GA
Sbjct: 49 TPLHLAAQLGHLEIVEVLLK---YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
+ D G+T + G+ D + L
Sbjct: 106 VNAQDKF-GKTAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D G TPLHLAA E V LL +GA + GSTPLH AA G LE
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGA----DVNAHDNDGSTPLHLAALFGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ LL GAD D FG+ + I++ ++ A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + N + +G T LH AA Y H + ++ LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKHGAD---- 72
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN D G+TPLHLAA G E V LL +GA
Sbjct: 73 --------VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA N G+TPLH AA LE + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGA----DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 228 DAFGRIPYAIALKYKH 243
D G P +A + H
Sbjct: 77 DNDGSTPLHLAALFGH 92
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ LHLAA Y +E++ +LL + +A + TPL +AA+ G L V+ L++ GA
Sbjct: 49 TPLHLAADYDHLEIVEVLLKH---GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
+ D G+T + G+ D + L
Sbjct: 106 VNAQDKF-GKTAFDISIDNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D+ G TPLHLAA E V LL NGA G TPLH A G LE
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA----DVNAIDAIGETPLHLVAMYGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ LL GAD D FG+ + I++ ++ A +L
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AA GQ + + +L+ + +A ++ TPL +AAMN L V+ L+++GA + D
Sbjct: 21 AARAGQDDEVRILMAN---GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
++ G T LH A YGH + ++ LL + +G + F
Sbjct: 78 AI-GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA G TPLH AA LE + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGA----DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 228 DAFGRIPYAIALKYKH 243
DA G P + Y H
Sbjct: 77 DAIGETPLHLVAMYGH 92
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
+ L +A N L+++E +++ V + + ++ LHL A YG +E++ +LL
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAI--GETPLHLVAMYGHLEIVEVLLKH---G 103
Query: 73 TNTDALNRYKQTPLMVAAMNG 93
+ +A +++ +T ++ NG
Sbjct: 104 ADVNAQDKFGKTAFDISIDNG 124
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN +DE G TPL+LA G E V LL NGA G TPLH AA G LE
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA----DVNAVDAIGFTPLHLAAFIGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
LL GAD D FG+ + I++ ++ A +L
Sbjct: 96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AA GQ + + +L+ + +A + Y TPL +A +G L V+ L+++GA + D
Sbjct: 21 AARAGQDDEVRILMAN---GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
++ G T LH AA+ GH + + LL + +G + F
Sbjct: 78 AI-GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA G TPL+ A G LE + LL GAD
Sbjct: 21 AARAGQDDEVRILMANGA----DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
DA G P +A H A +L
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVL 99
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ L+LA A+G +E++ +LL + +A++ TPL +AA G L + L++ GA
Sbjct: 49 TPLYLATAHGHLEIVEVLLKN---GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
+ D G+T + G+ D + L
Sbjct: 106 VNAQDKF-GKTAFDISIGNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
S G T LH AA GH++ ++ LL+ VN R + G TPLHLAA+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------VNARSKDGNTPLHLAAKNG 53
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
+E V LL GA G+TP H A + G E ++ L A GAD
Sbjct: 54 HAEIVKLLLAKGA----DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 58.5 bits (140), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
+ G TPLH AA+ G +E V LL GA G+TPLH AA+ G E ++ LL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 219 AWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
A GAD G P +A K H LL+ A+
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
TPL AA NG VKKL+ GA + N S G T LH AA GH++ ++ LL
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-- 67
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN R + G TP HLA + G E V L GA
Sbjct: 68 ----------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ LH AA G E + LL + + +A ++ TPL +AA NG VK L+ GA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK---GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS 151
+ N S G T H A GH + ++ LL A A +WG S
Sbjct: 68 V-NARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNARSWGSS 109
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170
F + +G T LH A+ G ++ LL + P N++D +G TPLH A
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDP-----------NVKDHAGWTPLHEACN 52
Query: 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
G + V LL + AL ++ GY +PLH AA+ G ++ ++ LL++GA R + F
Sbjct: 53 HGHLKVVELLLQHKALVNTT----GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Query: 231 GRIP 234
G P
Sbjct: 109 GLRP 112
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
++ LH+A+ G I + LL ++ + + TPL A +G L V+ L++ A
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQN---GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
+ N Q + LH AA GH D ++ LL+ + N +G DES + L
Sbjct: 68 LV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126
Query: 167 LAAR 170
L +
Sbjct: 127 LPEK 130
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
+ L A +G L+++E +++ V T+GY S LH AA G ++++ +LL
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALV--NTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 25/163 (15%)
Query: 33 ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN 92
ADPT+ + ++SALH AAA L+ L + + L+R T L + A N
Sbjct: 190 ADPTIYNKS----ERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHN 245
Query: 93 ---GKLSCVKKLIESGAFI-------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
+++ K L+E GA + + + +GRT LHYAA + ++ L+ ++
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSN 305
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
+ +DE G TP+ LAA++G E V L+ GA
Sbjct: 306 K-----------DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 29 AMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV 88
A V+ D + Y ++ALH AA ++ L+ + +N D + +TP+ +
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG--SNKDKQDEDGKTPIXL 319
Query: 89 AAMNGKLSCVKKLIESGAFILNFDS 113
AA G++ V LI+ GA + D+
Sbjct: 320 AAQEGRIEVVXYLIQQGASVEAVDA 344
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A +GKL +K+ I + + RT LH+A GH++ ++ LL
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------ 61
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
VN +D++G +PLH+AA G E V LL GA ++ N G TPLH+AA
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQN---GCTPLHYAASKN 117
Query: 210 SLECIRELLAWGADRVQPDA 229
E LL GA+ PDA
Sbjct: 118 RHEIAVMLLEGGAN---PDA 134
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 21/218 (9%)
Query: 21 NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80
+G L+ ++ + AD + L + ++ALH A + G E++ LL + D
Sbjct: 16 SGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG- 73
Query: 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAAR 140
+PL +AA G+ VK L+ GA + N + G T LHYAA + + +L
Sbjct: 74 --WSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHE-IAVMLLEGG 129
Query: 141 TSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST 200
+P A +D AT +H AA +G + +H LL A ST G+T
Sbjct: 130 ANPDA-----------KDHYEATAMHRAAAKGNLKMIHILLYYKA----STNIQDTEGNT 174
Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
PLH A +E + L++ GA + + P +A
Sbjct: 175 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 9 ERSESALFVAVENGDLQMIEAMVEAD-PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD 67
+ S +AL A G +++E +++ P +G+ S LH+AA+ G+ E++ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW---SPLHIAASAGRDEIVKALLG 94
Query: 68 QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
+ +A+N+ TPL AA + L+E GA D + T +H AA G
Sbjct: 95 KG---AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAAKG 150
Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
+ + LL + NI+D G TPLHLA + E L+ GA
Sbjct: 151 NLKMIHILLY------------YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
D+ T LH A G +E V LL G G +PLH AA G E ++ L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
L GA + G P A A +L A P
Sbjct: 93 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A +GKL +K+ I + + RT LH+A GH++ ++ LL
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------ 62
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
VN +D++G +PLH+AA G E V LL GA ++ N G TPLH+AA
Sbjct: 63 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQN---GCTPLHYAASKN 118
Query: 210 SLECIRELLAWGADRVQPDA 229
E LL GA+ PDA
Sbjct: 119 RHEIAVMLLEGGAN---PDA 135
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 21/218 (9%)
Query: 21 NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80
+G L+ ++ + AD + L + ++ALH A + G E++ LL + D
Sbjct: 17 SGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG- 74
Query: 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAAR 140
+PL +AA G+ VK L+ GA + N + G T LHYAA + + +L
Sbjct: 75 --WSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHE-IAVMLLEGG 130
Query: 141 TSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST 200
+P A +D AT +H AA +G + +H LL A ST G+T
Sbjct: 131 ANPDA-----------KDHYEATAMHRAAAKGNLKMIHILLYYKA----STNIQDTEGNT 175
Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
PLH A +E + L++ GA + + P +A
Sbjct: 176 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 9 ERSESALFVAVENGDLQMIEAMVEAD-PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD 67
+ S +AL A G +++E +++ P +G+ S LH+AA+ G+ E++ LL
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW---SPLHIAASAGRDEIVKALLG 95
Query: 68 QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
+ +A+N+ TPL AA + L+E GA D + T +H AA G
Sbjct: 96 KG---AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAAKG 151
Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
+ + LL + NI+D G TPLHLA + E L+ GA
Sbjct: 152 NLKMIHILLY------------YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
D+ T LH A G +E V LL G G +PLH AA G E ++ L
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGRDEIVKAL 93
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
L GA + G P A A +L A P
Sbjct: 94 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A +GKL +K+ I + + RT LH+A GH++ ++ LL
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------ 61
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
VN +D++G +PLH+AA G E V LL GA ++ N G TPLH+AA
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQN---GCTPLHYAASKN 117
Query: 210 SLECIRELLAWGADRVQPDA 229
E LL GA+ PDA
Sbjct: 118 RHEIAVMLLEGGAN---PDA 134
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 26/216 (12%)
Query: 9 ERSESALFVAVENGDLQMIEAMVEAD-PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD 67
+ S +AL A G +++E +++ P +G+ S LH+AA+ G E++ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW---SPLHIAASAGXDEIVKALLV 94
Query: 68 QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
+ + +A+N+ TPL AA + L+E GA D T +H AA G
Sbjct: 95 KG---AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKG 150
Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALA 187
+ + LL + NI+D G TPLHLA + E L+ GA
Sbjct: 151 NLKMVHILLF------------YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-- 196
Query: 188 CSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
S TPL A G L I + LA G +
Sbjct: 197 --SIYIENKEEKTPLQVAK--GGLGLILKRLAEGEE 228
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
D+ T LH A G +E V LL G G +PLH AA G E ++ L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
L GA + G P A A +L A P
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A +GKL +K+ I + + RT LH+A GH++ ++ LL
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------ 61
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
VN +D++G +PLH+AA G E V LL GA ++ N G TPLH+AA
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA-HVNAVNQN---GCTPLHYAASKN 117
Query: 210 SLECIRELLAWGADRVQPDA 229
E LL GA+ PDA
Sbjct: 118 RHEIAVMLLEGGAN---PDA 134
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 86/224 (38%), Gaps = 32/224 (14%)
Query: 21 NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80
+G L ++ + AD + L + ++ALH A + G E++ LL + D
Sbjct: 16 SGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG- 73
Query: 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAAR 140
+PL +AA G+ VK L+ GA + N + G T LHYAA + LL
Sbjct: 74 --WSPLHIAASAGRDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 141 TSPVANTWG---------------------FSRFVNIRDESGATPLHLAARQGWSECVHT 179
+ + + NI+D G TPLHLA + E
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
L+ GA S TPL A G L I + LA G +
Sbjct: 191 LVTQGA----SIYIENKEEKTPLQVAK--GGLGLILKRLAEGEE 228
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
D+ T LH A G +E V LL G G +PLH AA G E ++ L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
L GA + G P A A +L A P
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
S LH A G + + +LL + + TPL A ++G CV L++ GA
Sbjct: 38 SPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
+ L + +H AA GH +C+ +L+ + ++ + TPL+L
Sbjct: 95 VQPESDLA--SPIHEAARRGHVECVNSLIA------------YGGNIDHKISHLGTPLYL 140
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
A CV LL++GA G + +PLH AR S E L+ +GAD
Sbjct: 141 ACENQQRACVKKLLESGADVNQGKGQD-----SPLHAVARTASEELACLLMDFGADTQAK 195
Query: 228 DAFGRIPYAI 237
+A G+ P +
Sbjct: 196 NAEGKRPVEL 205
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLT-AARTS 142
+P+ AA++G ++ LI G + +N + + LH A GH C++ LL A+ +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
V W TPL A G +CV+ LL +GA + ++P+
Sbjct: 64 GVTADW-------------HTPLFNACVSGSWDCVNLLLQHGASVQPESDL-----ASPI 105
Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
H AAR G +EC+ L+A+G + + P +A + + +AC L S A+
Sbjct: 106 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA GSTPLH AAR G LE ++ LL GAD
Sbjct: 31 AARAGQDDEVRILMANGA----DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
D FG+ + I++ ++ A +L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
V +D++G+TPLHLAAR G E V LL+ GA
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 40 MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVK 99
M S GK+ L AA GQ + + +L+ + A ++ TPL +AA NG L VK
Sbjct: 20 MGSDLGKK--LLEAARAGQDDEVRILMAN---GADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 100 KLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
L+E+GA + D G+T + G+ D + L
Sbjct: 75 LLLEAGADVXAQDKF-GKTAFDISIDNGNEDLAEIL 109
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
AAR G + +R L+A GAD D G P +A + H LL + A+
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + D G T LH AA GH + ++ LL A
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 146 NTWGFSRF 153
+ +G + F
Sbjct: 87 DKFGKTAF 94
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA GSTPLH AAR G LE ++ LL GAD
Sbjct: 13 AARAGQDDEVRILMANGA----DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
D FG+ + I++ ++ A +L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
V +D++G+TPLHLAAR G E V LL+ GA
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 40 MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVK 99
M S GK+ L AA GQ + + +L+ + A ++ TPL +AA NG L VK
Sbjct: 2 MGSDLGKK--LLEAARAGQDDEVRILMAN---GADVAAKDKNGSTPLHLAARNGHLEVVK 56
Query: 100 KLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
L+E+GA + D G+T + G+ D + L
Sbjct: 57 LLLEAGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
AAR G + +R L+A GAD D G P +A + H LL + A+
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + D G T LH AA GH + ++ LL A
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 146 NTWGFSRF 153
+ +G + F
Sbjct: 69 DKFGKTAF 76
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
S LH A G + + +LL + + TPL A ++G CV L++ GA
Sbjct: 94 SPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
+ L + +H AA GH +C+ +L+ + ++ + TPL+L
Sbjct: 151 VQPESDLA--SPIHEAARRGHVECVNSLIA------------YGGNIDHKISHLGTPLYL 196
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
A CV LL++GA G + +PLH R S E L+ +GAD
Sbjct: 197 ACENQQRACVKKLLESGADVNQGKGQD-----SPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 228 DAFGRIPYAI 237
+A G+ P +
Sbjct: 252 NAEGKRPVEL 261
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 76 DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
DA++ + +P+ AA++G ++ LI G + +N + + LH A GH C++ L
Sbjct: 55 DAVSDW--SPMHEAAIHGHQLSLRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKIL 111
Query: 136 LT-AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN 194
L A+ + V W TPL A G +CV+ LL +GA +
Sbjct: 112 LKHGAQVNGVTADW-------------HTPLFNACVSGSWDCVNLLLQHGASVQPESDL- 157
Query: 195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
++P+H AAR G +EC+ L+A+G + + P +A + + +AC L S
Sbjct: 158 ----ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 255 AE 256
A+
Sbjct: 214 AD 215
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA D L G + LH AA YGH + LL A
Sbjct: 6 LLEAARAGQDDEVRILMANGA-PFTTDWL-GTSPLHLAAQYGHFSTTEVLLRA------- 56
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
G SR + R + TPLH+AA +G + V LL +GA T LH+A
Sbjct: 57 ---GVSR--DARTKVDRTPLHMAASEGHANIVEVLLKHGA----DVNAKDMLKMTALHWA 107
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
E + L+ +GAD F + + I++ ++ A +L
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 41 TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKK 100
T+ + S LHLAA YG +LL + DA + +TPL +AA G + V+
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRA---GVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 101 LIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALL 136
L++ GA + D L+ T LH+A + H + ++ L+
Sbjct: 86 LLKHGADVNAKDMLK-MTALHWATEHNHQEVVELLI 120
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 40/220 (18%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLY-TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
LH+A G + + L++ F D N +QTPL +A + S V+ L+ +GA
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
+ D G+T H A + CL+ALL +A + + R+ G T LH+A
Sbjct: 73 MALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLD--------LEARNYDGLTALHVA 123
Query: 169 ARQGWSECVHTLLDNGA------------------------------LACSSTGGNGYPG 198
E V LL+ GA ++ Y G
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
S+ LH A+ G L +R L+ GAD + P +A
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 84 TPLMVAAMNGKLSCVKKLI---ESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAAR 140
TPL +A + G L V +L+ + G L+ + +T LH A ++ L+TA
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG- 69
Query: 141 TSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST 200
SP+A D G T HLA C+ LLD+ A Y G T
Sbjct: 70 ASPMA-----------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 201 PLHFAARGGSLECIRELLAWGAD 223
LH A E ++ LL GAD
Sbjct: 119 ALHVAVNTECQETVQLLLERGAD 141
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
DE G TPLH+A QG VH L++ TPLH A +R L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQAC-AALLNPSSAEPLVWPLQLRNMTDL 270
+ GA + D G+ +A +++ C ALL+ SA P L+ RN L
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD--SAAPGTLDLEARNYDGL 117
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 87/214 (40%), Gaps = 19/214 (8%)
Query: 38 LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSC 97
L T +++LHLAA + + + LLD + D R TPL A +
Sbjct: 43 LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR---TPLHAAVAADAMGV 99
Query: 98 VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR 157
+ L+ + A LN G T L AA ++ L+TA +N
Sbjct: 100 FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA------------DADINAA 147
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
D SG T LH AA +E V+ LL + ++ TPL AAR GS E + L
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILL----MHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251
L A+R D R+P +A + H LL+
Sbjct: 204 LDNFANREITDHMDRLPRDVASERLHHDIVRLLD 237
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 54/206 (26%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G ++ + LL + ++ DALNR+ +T L V M G + +L++ GA
Sbjct: 15 AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSTAIALELLKQGA------ 65
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
SP N++D SG +P+H AAR G
Sbjct: 66 -----------------------------SP-----------NVQDTSGTSPVHDAARTG 85
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232
+ + + L+++GA G G+ P+H A + G + LA +D + DA G
Sbjct: 86 FLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGL 140
Query: 233 IPYAIALKYKHQACAALLNPSSAEPL 258
P +AL+ Q +L PL
Sbjct: 141 TPLELALQRGAQDLVDILQGHMVAPL 166
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G + V L+ NGA ++ +GY TPLH AAR G LE + LL GAD
Sbjct: 9 AARAGQDDEVRILMANGA-DVNAKDKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSS 254
D FG+ + I++ ++ A +L ++
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
VN +D+ G TPLHLAAR+G E V LL GA
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
L+ AA G+ V+ L+ +GA + N G T LH AA GH + ++ LL A
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 146 NTWGFSRF 153
+ +G + F
Sbjct: 65 DKFGKTAF 72
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AA GQ + + +L+ + +A ++ TPL +AA G L V+ L+++GA + D
Sbjct: 9 AARAGQDDEVRILMAN---GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAA 139
G+T + G+ D + L AA
Sbjct: 66 KF-GKTAFDISIDNGNEDLAEILQKAA 91
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 81/204 (39%), Gaps = 19/204 (9%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
+ALHLAAAY + + LL+ D + R TPL A + LI + A
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRAT 115
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
L+ G T L AA L+ L+ + VN D+ G + LH
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALHW 163
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AA + LL NGA + TPL AAR GS E + LL A+R
Sbjct: 164 AAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 228 DAFGRIPYAIALKYKHQACAALLN 251
D R+P IA + H LL+
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLD 243
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 154 VNIRDESGATPLHLAA------RQGWSE-------CVHTLLDNGALACSSTGGNGYPGST 200
VN+R G TPL +A+ G SE + + GA + T G+T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD---RTGAT 59
Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258
LH AA + + LL AD D GR P A+ Q +L + A L
Sbjct: 60 ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 64/161 (39%), Gaps = 16/161 (9%)
Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
+N S G + LH AA +G +D + LL AN R+ A PLHLA
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHG-----ANAGA-------RNADQAVPLHLA 126
Query: 169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD 228
+QG + V LLD+ A G+TPL +A GG E + LL GA +
Sbjct: 127 CQQGHFQVVKCLLDSNA----KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 229 AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTD 269
G A+ KH LL A V + R D
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD 223
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
+PL VAA++G+ + L++ GA ++ Q LH A GH ++ LL + P
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAGARNADQA-VPLHLACQQGHFQVVKCLLDS-NAKP 145
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
N +D SG TPL A G E V LL +GA S + G+T LH
Sbjct: 146 -----------NKKDLSGNTPLIYACSGGHHELVALLLQHGA----SINASNNKGNTALH 190
Query: 204 FAARGGSLECIRELLAWGA 222
A + + LL GA
Sbjct: 191 EAVIEKHVFVVELLLLHGA 209
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSA-----LHLAAAYGQIEVLSMLLD 67
S L VA +G +I P +L + G ++A LHLA G +V+ LLD
Sbjct: 88 SPLHVAALHGRADLI-------PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 68 QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
D TPL+ A G V L++ GA I N + +G T LH A
Sbjct: 141 SNAKPNKKDL---SGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEK 196
Query: 128 HSDCLQALLTAARTSPVAN 146
H ++ LL + V N
Sbjct: 197 HVFVVELLLLHGASVQVLN 215
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
++ALHLAA Y + + LL+ D + R TPL A + LI + A
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRA 114
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
L+ G T L AA L+ L+ + VN D+ G + LH
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALH 162
Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
AA + LL NGA + TPL AAR GS E + LL A+R
Sbjct: 163 WAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218
Query: 227 PDAFGRIPYAIALKYKHQACAALLN 251
D R+P IA + H LL+
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 63/162 (38%), Gaps = 28/162 (17%)
Query: 84 TPLMVAAMNG-------------KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
TPLM+A+ +G + + I GA + N G T LH AA Y SD
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71
Query: 131 CLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS 190
+ LL A S NI+D G TPLH A L+ N A +
Sbjct: 72 AAKRLLEA------------SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA---TD 116
Query: 191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232
+ G+TPL AAR + +L+ AD D G+
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 154 VNIRDESGATPLHLAA------RQGWSE-------CVHTLLDNGALACSSTGGNGYPGST 200
VN+R G TPL +A+ G SE + + GA + T G T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD---RTGET 59
Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258
LH AAR + + LL AD D GR P A+ Q +L + A L
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
++ALHLAA Y + + LL+ D + R TPL A + LI + A
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRA 115
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
L+ G T L AA L+ L+ + VN D+ G + LH
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALH 163
Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
AA + LL NGA + TPL AAR GS E + LL A+R
Sbjct: 164 WAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 219
Query: 227 PDAFGRIPYAIALKYKHQACAALLN 251
D R+P IA + H LL+
Sbjct: 220 TDHMDRLPRDIAQERMHHDIVRLLD 244
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 63/162 (38%), Gaps = 28/162 (17%)
Query: 84 TPLMVAAMNGKL-------------SCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
TPLM+A+ +G + + I GA + N G T LH AA Y SD
Sbjct: 13 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 72
Query: 131 CLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS 190
+ LL A S NI+D G TPLH A L+ N A +
Sbjct: 73 AAKRLLEA------------SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA---TD 117
Query: 191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232
+ G+TPL AAR + +L+ AD D G+
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 159
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 154 VNIRDESGATPLHLAA------RQGWSE-------CVHTLLDNGALACSSTGGNGYPGST 200
VN+R G TPL +A+ G SE + + GA + T G T
Sbjct: 4 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD---RTGET 60
Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258
LH AAR + + LL AD D GR P A+ Q +L + A L
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Query: 37 VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS 96
V G + G +ALHLA + L LL + D N QT L +AA+ G+ S
Sbjct: 1 VFGYVTEDG-DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 97 CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP--VANTWGFSRFV 154
V+KL +GA +L + G T LH A C LL + P ++T+ ++
Sbjct: 60 TVEKLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY-LTQSQ 117
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
+ ++ P + ++ ++ L + Y G TPLH A E +
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDAEMV 174
Query: 215 RELLAWGADRVQPDAF-GRIPYAIALKYKHQACAALLNPSSAEP 257
R L GAD +P+ GR P +A++ + + LL + A+P
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 76 DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
+A N TPL VA ++ V+ L ++GA + + GRT LH A + L+ L
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 136 LTAARTSPVANTWG 149
L A P A +G
Sbjct: 212 LKAG-ADPTARMYG 224
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Query: 37 VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS 96
V G + G +ALHLA + L LL + D N QT L +AA+ G+ S
Sbjct: 1 VFGYVTEDG-DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 97 CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP--VANTWGFSRFV 154
V+KL +GA +L + G T LH A C LL + P ++T+ ++
Sbjct: 60 TVEKLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY-LTQSQ 117
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
+ ++ P + ++ ++ L + Y G TPLH A E +
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDAEMV 174
Query: 215 RELLAWGADRVQPDAF-GRIPYAIALKYKHQACAALLNPSSAEP 257
R L GAD +P+ GR P +A++ + + LL + A+P
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 76 DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
+A N TPL VA ++ V+ L ++GA + + GRT LH A + L+ L
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 136 LTAARTSPVANTWG 149
L A P A +G
Sbjct: 212 LKAG-ADPTARMYG 224
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A G+L +K+ + G ++N +G T L +A+ +G + ++ LL WG
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE----------WG 59
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
+ ++ A L LA+ G+++ V LL+ + G TPL +A RG
Sbjct: 60 ADPHILAKERESA--LSLASTGGYTDIVGLLLERDV----DINIYDWNGGTPLLYAVRGN 113
Query: 210 SLECIRELLAWGADRVQPDAFGRIP--YAIALKYK 242
++C+ LLA GAD G P A+AL Y+
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 9 ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
ER + L A G+++ + ++E ADP +L ++SAL LA+ G +++ +LL
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE----RESALSLASTGGYTDIVGLLL 89
Query: 67 DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
++ + + + TPL+ A + CV+ L+ GA L ++ G T + A
Sbjct: 90 ER---DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA-DLTTEADSGYTPMDLAVAL 145
Query: 127 GHSDCLQAL 135
G+ Q +
Sbjct: 146 GYRKVQQVI 154
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
+PL A G+ + V+ LI GA I N + T LH AA +GH D +Q LL
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ------ 93
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
+ +N +E G PLH A G + L+ NGAL N Y G P+
Sbjct: 94 ------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKY-GEMPVD 143
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
A +RELL A+++ + RIPY
Sbjct: 144 KAK-----APLRELLRERAEKMGQN-LNRIPY 169
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
+N D+ G +PLH A R+G S V L+ GA G+ TPLH AA G +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD----DTPLHLAASHGHRDI 87
Query: 214 IRELLAWGADRVQPDAFGRIPYAIA 238
+++LL + AD + G +P A
Sbjct: 88 VQKLLQYKADINAVNEHGNVPLHYA 112
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
S LH A G+ V+ ML+ + +NR TPL +AA +G V+KL++ A
Sbjct: 41 SPLHWACREGRSAVVEMLI---MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
I N + G LHYA ++G + L+ + N +G
Sbjct: 98 I-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
G + LHLAA++G +++ LL + +A+N + PL A G+ + L+ +
Sbjct: 71 GDDTPLHLAASHGHRDIVQKLLQ---YKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 105 GAFI 108
GA +
Sbjct: 128 GALV 131
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 54/199 (27%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G ++ + LL + ++ DALNR+ +T L V M G + +L++ GA
Sbjct: 9 AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSTAIALELLKQGA------ 59
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
SP N++D SG +P+H AAR G
Sbjct: 60 -----------------------------SP-----------NVQDTSGTSPVHDAARTG 79
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232
+ + + L+++GA G G+ P+H A + G + LA +D + DA G
Sbjct: 80 FLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGL 134
Query: 233 IPYAIALKYKHQACAALLN 251
P +AL+ Q +L
Sbjct: 135 TPLELALQRGAQDLVDILQ 153
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
G++P+H AAR G L+ ++ L+ GAD PD G +P +A++ H A + L S
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
+PL A G+ + V+ LI GA I N + T LH AA +GH D +Q LL
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ------ 88
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
+ +N +E G PLH A G + L+ NGAL N Y G P+
Sbjct: 89 ------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKY-GEMPVD 138
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
A +RELL A+++ + RIPY
Sbjct: 139 KAK-----APLRELLRERAEKMGQN-LNRIPY 164
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
+N D+ G +PLH A R+G S V L+ GA G+ TPLH AA G +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD----DTPLHLAASHGHRDI 82
Query: 214 IRELLAWGADRVQPDAFGRIPYAIA 238
+++LL + AD + G +P A
Sbjct: 83 VQKLLQYKADINAVNEHGNVPLHYA 107
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
S LH A G+ V+ ML+ + +NR TPL +AA +G V+KL++ A
Sbjct: 36 SPLHWACREGRSAVVEMLI---MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
I N + G LHYA ++G + L+ + N +G
Sbjct: 93 I-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
G + LHLAA++G +++ LL + +A+N + PL A G+ + L+ +
Sbjct: 66 GDDTPLHLAASHGHRDIVQKLLQ---YKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 105 GAFI 108
GA +
Sbjct: 123 GALV 126
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
++ALHLAA Y + + LL+ D + R TPL A + LI + A
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRA 82
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
L+ G T L AA L+ L+ + VN D+ G + LH
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALH 130
Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
AA + LL NGA + TPL AAR GS E + LL A+R
Sbjct: 131 WAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186
Query: 227 PDAFGRIPYAIALKYKHQACAALLN 251
D R+P IA + H LL+
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 54/137 (39%), Gaps = 15/137 (10%)
Query: 96 SCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVN 155
+ + I GA + N G T LH AA Y SD + LL A S N
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA------------SADAN 52
Query: 156 IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIR 215
I+D G TPLH A L+ N A + + G+TPL AAR +
Sbjct: 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRA---TDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 216 ELLAWGADRVQPDAFGR 232
+L+ AD D G+
Sbjct: 110 DLINSHADVNAVDDLGK 126
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
G T LH AAR + + LL AD D GR P A+ Q +L + A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 258 L 258
L
Sbjct: 85 L 85
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 74/207 (35%), Gaps = 51/207 (24%)
Query: 96 SCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF-- 153
S + I GA + N G T LH AA Y SD + LL A+ + + + G +
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 154 --------------------VNIRDESGATPLHLAARQGWSECVHTLLDNGA-------L 186
++ R G TPL LAAR + L+++ A L
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 187 ACSS------------------TGGN----GYPGSTPLHFAARGGSLECIRELLAWGADR 224
S+ G N TPL AAR GS E + LL A+R
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 181
Query: 225 VQPDAFGRIPYAIALKYKHQACAALLN 251
D R+P IA + H LL+
Sbjct: 182 DITDHMDRLPRDIAQERMHHDIVRLLD 208
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
G T LH AAR + + LL AD D GR P A+ Q +L + A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 258 L 258
L
Sbjct: 82 L 82
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 86 LMVAAMNGKLSCVKKL--IESGAFILNFDSLQGR--TCLHYAAYYGHSDCLQALLTAART 141
L+ AA G + VKKL ++S +N ++GR T LH+AA Y ++ LL
Sbjct: 12 LLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 142 SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201
V+ +D+ G PLH A G E L+ +GA+ + TP
Sbjct: 68 ------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----LWKFTP 111
Query: 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
LH AA G E + LL GAD + + G P
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AA+ G E V L ++ C G STPLHFAA + + LL GAD
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQ---STPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
D G +P A Y H A LL
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELL 94
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 3 QRMSCRE---RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQI 59
Q ++CR+ R + L A + ++E +++ V G LH A +YG
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPLHNACSYGHY 88
Query: 60 EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
EV +L+ + D +K TPL AA GK K L++ GA
Sbjct: 89 EVAELLVKHGAVVNVADL---WKFTPLHEAAAKGKYEICKLLLQHGA 132
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G +E L+ LL + R T L V + G ++L+ GA +
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGANP-DLK 66
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
G +H AA G D LQ LL F VNI D G PLHLAA++G
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLE------------FQADVNIEDNEGNLPLHLAAKEG 114
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
V L+ + A S+ G + G T A G E + + A GA
Sbjct: 115 HLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 86 LMVAAMNGKLSCVKKL--IESGAFILNFDSLQGR--TCLHYAAYYGHSDCLQALLTAART 141
L+ AA G + VKKL ++S +N ++GR T LH+AA Y ++ LL
Sbjct: 14 LLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 69
Query: 142 SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201
V+ +D+ G PLH A G E L+ +GA+ + TP
Sbjct: 70 ------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----LWKFTP 113
Query: 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
LH AA G E + LL GAD + + G P
Sbjct: 114 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 146
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AA+ G E V L ++ C G STPLHFAA + + LL GAD
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQ---STPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
D G +P A Y H A LL
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELL 96
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 3 QRMSCRE---RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQI 59
Q ++CR+ R + L A + ++E +++ V G LH A +YG
Sbjct: 33 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPLHNACSYGHY 90
Query: 60 EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
EV +L+ + D +K TPL AA GK K L++ GA
Sbjct: 91 EVAELLVKHGAVVNVADL---WKFTPLHEAAAKGKYEICKLLLQHGA 134
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G +E L+ LL + R T L V + G ++L+ GA N D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
L+ RT +H AA G D LQ LL F VNI D G PLHLAA
Sbjct: 65 -LKDRTGFAVIHDAARAGQLDTLQTLLE------------FQADVNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
++G V L+ + A S+ G + G T A G E + + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 86 LMVAAMNGKLSCVKKL--IESGAFILNFDSLQGR--TCLHYAAYYGHSDCLQALLTAART 141
L+ AA G + VKKL ++S +N ++GR T LH+AA Y ++ LL
Sbjct: 16 LLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 71
Query: 142 SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201
V+ +D+ G PLH A G E L+ +GA+ + TP
Sbjct: 72 ------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----LWKFTP 115
Query: 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
LH AA G E + LL GAD + + G P
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 148
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AA+ G E V L ++ C G STPLHFAA + + LL GAD
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQ---STPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
D G +P A Y H A LL
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELL 98
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 3 QRMSCRE---RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQI 59
Q ++CR+ R + L A + ++E +++ V G LH A +YG
Sbjct: 35 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPLHNACSYGHY 92
Query: 60 EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
EV +L+ + D +K TPL AA GK K L++ GA
Sbjct: 93 EVAELLVKHGAVVNVADL---WKFTPLHEAAAKGKYEICKLLLQHGA 136
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 83 QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
++PL++AA + + KL++ ++ G T LH AA Y D L+A + +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY---DNLEAAMVLMEAA 60
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG------- 195
P F + E G T LH+A V LL GA + G+
Sbjct: 61 P---ELVFEPMTSELYE-GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116
Query: 196 --YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231
Y G PL FAA GS E +R L+ GAD D+ G
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 12 ESALFVAVENGDLQMIEAMVEADPTVLG--MTSG-YGKQSALHLAAAYGQIEVLSMLLDQ 68
E+AL +A +L+ ++EA P ++ MTS Y Q+ALH+A + ++ LL +
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 69 -----------FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR 117
F Y + L Y + PL AA G V+ LIE GA I DSL G
Sbjct: 98 GASVSARATGSVFHYRPHN-LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL-GN 155
Query: 118 TCLH 121
T LH
Sbjct: 156 TVLH 159
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 58/208 (27%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G ++ + LL + ++ DALNR+ +T L V M G + +L++ GA
Sbjct: 17 AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSPAVALELLKQGA------ 67
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
SP N++D SG +P+H AAR G
Sbjct: 68 -----------------------------SP-----------NVQDASGTSPVHDAARTG 87
Query: 173 WSECVHTLLDNGA--LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
+ + + L+++GA A ST GS P+H A R G + LA +D DA
Sbjct: 88 FLDTLKVLVEHGADVNALDST------GSLPIHLAIREGH-SSVVSFLAPESDLHHRDAS 140
Query: 231 GRIPYAIALKYKHQACAALLNPSSAEPL 258
G P +A + Q +L P+
Sbjct: 141 GLTPLELARQRGAQNLMDILQGHMMIPM 168
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 58/208 (27%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G ++ + LL + ++ DALNR+ +T L V M G + +L++ GA
Sbjct: 15 AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSPAVALELLKQGA------ 65
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
SP N++D SG +P+H AAR G
Sbjct: 66 -----------------------------SP-----------NVQDASGTSPVHDAARTG 85
Query: 173 WSECVHTLLDNGA--LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
+ + + L+++GA A ST GS P+H A R G + LA +D DA
Sbjct: 86 FLDTLKVLVEHGADVNALDST------GSLPIHLAIREGHSSVV-SFLAPESDLHHRDAS 138
Query: 231 GRIPYAIALKYKHQACAALLNPSSAEPL 258
G P +A + Q +L P+
Sbjct: 139 GLTPLELARQRGAQNLMDILQGHMMIPM 166
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G +E L+ LL + R T L V + G ++L+ GA N D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
L+ RT +H AA G D LQ LL F VNI D G PLHLAA
Sbjct: 65 -LKDRTGFAVIHDAARAGFLDTLQTLLE------------FQADVNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
++G V L+ + A S+ G + G T A G E + + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A G+L +K+ + G ++N +G T L +A+ +G + ++ LL WG
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE----------WG 59
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
+ ++ A L LA+ G+++ V LL+ + G TPL +A G
Sbjct: 60 ADPHILAKERESA--LSLASTGGYTDIVGLLLERDV----DINIYDWNGGTPLLYAVHGN 113
Query: 210 SLECIRELLAWGADRVQPDAFGRIP--YAIALKYK 242
++C+ LLA GAD G P A+AL Y+
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 9 ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
ER + L A G+++ + ++E ADP +L ++SAL LA+ G +++ +LL
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE----RESALSLASTGGYTDIVGLLL 89
Query: 67 DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
++ + + + TPL+ A + CV+ L+ GA L ++ G T + A
Sbjct: 90 ER---DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGA-DLTTEADSGYTPMDLAVAL 145
Query: 127 GHSDCLQAL 135
G+ Q +
Sbjct: 146 GYRKVQQVI 154
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 9 ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
E + L A +G + ++E +++ ADP +LG G++SAL LA + G +++ MLL
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLL 87
Query: 67 DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
D + + + TPL+ A + CVK L+ESGA
Sbjct: 88 D---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 31/122 (25%)
Query: 152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGA--------------LACSS------- 190
+N DE G TPL AA G V LL NGA LACS
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 84
Query: 191 --------TGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDA-FGRIPYAIALK 240
+ G TPL +A G ++C++ LL GAD ++ D+ + + A+AL
Sbjct: 85 MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Query: 241 YK 242
Y+
Sbjct: 145 YR 146
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTD--ALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
L AAA+GQI V+ +F L D L + +++ L +A G VK L++ G
Sbjct: 38 LMWAAAHGQIAVV-----EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 92
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS 151
+ +D G T L YA + H C++ LL + + G++
Sbjct: 93 VNEYD-WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 135
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 9 ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
E + L A +G + ++E +++ ADP +LG G++SAL LA + G +++ MLL
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLL 89
Query: 67 DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
D + + + TPL+ A + CVK L+ESGA
Sbjct: 90 D---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 31/122 (25%)
Query: 152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGA--------------LACSS------- 190
+N DE G TPL AA G V LL NGA LACS
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 86
Query: 191 --------TGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDA-FGRIPYAIALK 240
+ G TPL +A G ++C++ LL GAD ++ D+ + + A+AL
Sbjct: 87 MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Query: 241 YK 242
Y+
Sbjct: 147 YR 148
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTD--ALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
L AAA+GQI V+ +F L D L + +++ L +A G VK L++ G
Sbjct: 40 LMWAAAHGQIAVV-----EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
+ +D G T L YA + H C++ LL + + G++
Sbjct: 95 VNEYD-WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G +E L+ LL + R T L V + G ++L+ GA N D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
L+ RT +H AA G D LQ LL F VNI D G PLHLAA
Sbjct: 65 -LKDRTGFAVIHDAARAGFLDTLQTLLE------------FQADVNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
++G V L+ + A S+ G + G T A G E + + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 9 ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
E + L A +G + ++E +++ ADP +LG G++SAL LA + G +++ MLL
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLL 105
Query: 67 DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
D + + + TPL+ A + CVK L+ESGA
Sbjct: 106 D---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 31/120 (25%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGA--------------LACSS--------- 190
+N DE G TPL AA G V LL NGA LACS
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 191 ------TGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDA-FGRIPYAIALKYK 242
+ G TPL +A G ++C++ LL GAD ++ D+ + + A+AL Y+
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
L AAA+GQI V+ LL + L + +++ L +A G VK L++ G +
Sbjct: 56 LMWAAAHGQIAVVEFLLQNG---ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 112
Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS 151
+D G T L YA + H C++ LL + + G++
Sbjct: 113 EYD-WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 153
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 18 AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA 77
A++NGDL ++ V V + G + LH AA GQ+E+L LL + +A
Sbjct: 9 ALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLL---LKGADINA 63
Query: 78 LNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
+++ TPL+ A G +SCVK L+ GA
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 29/62 (46%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
G PLH+AA G LE + LL GAD PD P A+ H +C LL A+
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 258 LV 259
V
Sbjct: 95 TV 96
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
M A NG L VK + G + N GR LHYAA G + L+ LL
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---- 60
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
+N D+ TPL A +G CV LL GA
Sbjct: 61 --------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 18 AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA 77
A++NGDL ++ V V + G + LH AA GQ+E+L LL + +A
Sbjct: 14 ALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLL---LKGADINA 68
Query: 78 LNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
+++ TPL+ A G +SCVK L+ GA
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 29/62 (46%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
G PLH+AA G LE + LL GAD PD P A+ H +C LL A+
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 258 LV 259
V
Sbjct: 100 TV 101
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
M A NG L VK + G + N GR LHYAA G + L+ LL
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---- 65
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
+N D+ TPL A +G CV LL GA
Sbjct: 66 --------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEV--PACPFCRCS 375
S +LC IC EN ++I+PCGH MC C +TA E CPFCRC
Sbjct: 335 GSTFQLCKICAENDKDVKIEPCGHLMCTSC------------LTAWQESDGQGCPFCRCE 382
Query: 376 I 376
I
Sbjct: 383 I 383
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
S +LC IC EN ++I+PCGH MC C + E CPFCRC I
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
S +LC IC EN ++I+PCGH MC C + E CPFCRC I
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
S +LC IC EN ++I+PCGH MC C + E CPFCRC I
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
S +LC IC EN ++I+PCGH MC C + E CPFCRC I
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 377
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
S +LC IC EN ++I+PCGH MC C + E CPFCRC I
Sbjct: 21 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
S +LC IC EN ++I+PCGH MC C A + CPFCRC I
Sbjct: 23 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAW----------QESDGQGCPFCRCEI 71
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
S +LC IC EN ++I+PCGH MC C + E CPFCRC I
Sbjct: 24 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 72
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 66 LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
L Q + DA++ +T L+ A G CV+ L E+GA + + D G T LH AA
Sbjct: 61 LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
Y + ++AL+ + + DE G T L LA
Sbjct: 121 YVRPEVVEALVE------------LGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 66 LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
L Q + DA++ +T L+ A G CV+ L E+GA + + D G T LH AA
Sbjct: 60 LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
Y + ++AL+ + + DE G T L LA
Sbjct: 120 YVRPEVVEALVE------------LGADIEVEDERGLTALELA 150
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 151 SRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA-LACSSTGGNGYPGSTPLHFAARGG 209
R V+ DE+G T L A G +CV L + GA L G G T LH AA
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG----GLTALHMAAGYV 121
Query: 210 SLECIRELLAWGAD 223
E + L+ GAD
Sbjct: 122 RPEVVEALVELGAD 135
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 53 AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
AAA G +E L+ LL + R T L V + G ++L+ GA N D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
L+ RT +H AA G D LQ LL VNI D G PLHLAA
Sbjct: 65 -LKDRTGFAVIHDAARAGFLDTLQTLLENQAD------------VNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
++G V L+ + A S+ G + G T A G E + + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR-TCLHYAAYYGHSDCLQALLTAA 139
+K L+ AA L+ VKK + I+NF Q T LH C A L
Sbjct: 177 FKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALH---------CAVASLHPK 225
Query: 140 RTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS 199
R VN +++ TPLH+AA + ++ + L +GA G
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----KMNALDSLGQ 281
Query: 200 TPLHFAARGGSLECIRELLAWGAD 223
T LH AA G L+ R LL++G+D
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSD 305
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
AAR G E + LL + C ++ G STPLH AA + ++ LL GAD
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRK---STPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
D G +P A Y H LL
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELL 110
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 14 ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLDQFF 70
+L A DL ++ + + ++ ++ALH A A + +V +LL +
Sbjct: 181 SLLQAAREADLAKVKKTLALE--IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG- 237
Query: 71 LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
N + N+ TPL VAA ++ L + GA + DSL G+T LH AA GH
Sbjct: 238 --ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL-GQTALHRAALAGHLQ 294
Query: 131 CLQALLTAARTSPVANTWGFS 151
+ LL+ + + GF+
Sbjct: 295 TCRLLLSYGSDPSIISLQGFT 315
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 20/145 (13%)
Query: 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR--TCLHYAAYYGHSDCLQALLTA 138
YK+ L+ AA +G + L+ +N + GR T LH AA Y +Q LL
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTP--LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG 198
V+ +D+ G PLH A G E LL +G AC
Sbjct: 81 GAD------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHG--AC--VNAMDLWQ 124
Query: 199 STPLHFAARGGSLECIRELLAWGAD 223
TPLH AA +E LL+ GAD
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGAD 149
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 92/234 (39%), Gaps = 36/234 (15%)
Query: 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA--F 107
LH A +YG EV +LL +A++ ++ TPL AA ++ L+ GA
Sbjct: 95 LHNACSYGHYEVTELLLKHG---ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 108 ILNFDSLQGRTCLHYA-----------AYYGHSDCLQALLTAARTSPVANTWGFS--RFV 154
++N G++ + A + GHS LL AAR + +A +
Sbjct: 152 LVN---CHGKSAVDMAPTPELRERLTYEFKGHS-----LLQAAREADLAKVKKTLALEII 203
Query: 155 NIRD-ESGATPLHLAA---RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGS 210
N + +S T LH A + LL GA + TPLH AA
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA----NVNEKNKDFMTPLHVAAERAH 259
Query: 211 LECIRELLAWGADRVQPDAFGRIP-YAIALKYKHQACAALLNPSSAEPLVWPLQ 263
+ + L GA D+ G+ + AL Q C LL+ S +P + LQ
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS-DPSIISLQ 312
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 52/178 (29%)
Query: 9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSA-LHLAAAYGQIEVLSMLLD 67
E + L A +G+ + + A++ P + + G++S LHLAA Y ++ ++ +LL
Sbjct: 22 EYKKDELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL- 78
Query: 68 QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
+ GA + D G LH A YG
Sbjct: 79 -----------------------------------QHGADVHAKDK-GGLVPLHNACSYG 102
Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
H + + LL + W F TPLH AA + E LL +GA
Sbjct: 103 HYEVTELLLKHGACVNAMDLWQF------------TPLHEAASKNRVEVCSLLLSHGA 148
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
D+ T LH AA + V + GA+ GG+ STPLH+A R G L + +L
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGD--LNSTPLHWATRQGHLSMVVQL 95
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAA----------LLNPSSAEPLVW 260
+ +GAD D G +A ++ H + A +++ + PL+W
Sbjct: 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 23/161 (14%)
Query: 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS-------------- 129
T L AA+N ++ VK I GA + T LH+A GH
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 130 -------DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD 182
C+ TS VA + V++ D++G TPL AA + S LL
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL- 162
Query: 183 NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
S G+ Y +T LH+A G+ I LL GA+
Sbjct: 163 -LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 24/170 (14%)
Query: 78 LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLT 137
++ Y ++ A G ++L+E+G + D + T LH+AA D ++ ++
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVKYYIS 63
Query: 138 AARTSPVANTWGFSRFVNIRDESG----ATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
I D+ G +TPLH A RQG V L+ GA G
Sbjct: 64 KGA---------------IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG- 107
Query: 194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243
G + +H AA+ G + L+A G D D G P A H
Sbjct: 108 ---EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 15 LFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
L +AV N D+++ +A+++ AD + S S A A G+ E+L+ +L
Sbjct: 43 LNIAVHNNDIEIAKALIDRGADINLQNSIS----DSPYLYAGAQGRTEILAYMLKHAT-- 96
Query: 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
+ + NRY L+ AA G + VK L+E G ++F + G T L A + L
Sbjct: 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 133 QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
+ A+ +I+D SG T + A ++G++E L
Sbjct: 157 YQDIVKLLMENGADQ-------SIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 31/193 (16%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART--- 141
PL A M + V++L+ S +L GR LH++ + + LL+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 SPVANTWGFSRF-----------------------VNIRDESGATPLHLAARQGWSECVH 178
+ G++ F +N G T LHLA + W E
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ-PDAFGRIPYAI 237
L++NGA N PLH AA GSL+ I L G V D G P
Sbjct: 125 FLIENGASVRIKDKFN----QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 238 ALKYKHQACAALL 250
AL H A LL
Sbjct: 181 ALAEGHGDAAVLL 193
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 27 IEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86
++ ++ + P++L G+ LH + ++ E+ S LL + D + TP
Sbjct: 18 VQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 87 MVAAMNGKLSCVKKLIESGAF-ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
+A G L VK L + LN + QG TCLH A + Q L+ +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---- 132
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL-HF 204
V I+D+ PLH AA G + + L G A + G+ TPL H
Sbjct: 133 --------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW---TPLFHA 181
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239
A G + + +GA+ D G +AL
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 31/193 (16%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART--- 141
PL A M + V++L+ S +L GR LH++ + + LL+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 SPVANTWGFSRF-----------------------VNIRDESGATPLHLAARQGWSECVH 178
+ G++ F +N G T LHLA + W E
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ-PDAFGRIPYAI 237
L++NGA N PLH AA GSL+ I L G V D G P
Sbjct: 125 FLIENGASVRIKDKFN----QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 238 ALKYKHQACAALL 250
AL H A LL
Sbjct: 181 ALAEGHGDAAVLL 193
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 27 IEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86
++ ++ + P++L G+ LH + ++ E+ S LL + D + TP
Sbjct: 18 VQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 87 MVAAMNGKLSCVKKLIESGAF-ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
+A G L VK L + LN + QG TCLH A + Q L+ +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---- 132
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL-HF 204
V I+D+ PLH AA G + + L G A + G+ TPL H
Sbjct: 133 --------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW---TPLFHA 181
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239
A G + + +GA+ D G +AL
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 31/193 (16%)
Query: 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART--- 141
PL A M + V++L+ S +L GR LH++ + + LL+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 SPVANTWGFSRF-----------------------VNIRDESGATPLHLAARQGWSECVH 178
+ G++ F +N G T LHLA + W E
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ-PDAFGRIPYAI 237
L++NGA N PLH AA GSL+ I L G V D G P
Sbjct: 125 FLIENGASVRIKDKFN----QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 238 ALKYKHQACAALL 250
AL H A LL
Sbjct: 181 ALAEGHGDAAVLL 193
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 27 IEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86
++ ++ + P++L G+ LH + ++ E+ S LL + D + TP
Sbjct: 18 VQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 87 MVAAMNGKLSCVKKLIESGAF-ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
+A G L VK L + LN + QG TCLH A + Q L+ +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---- 132
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL-HF 204
V I+D+ PLH AA G + + L G A + G+ TPL H
Sbjct: 133 --------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW---TPLFHA 181
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239
A G + + +GA+ D G +AL
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 82/215 (38%), Gaps = 58/215 (26%)
Query: 72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
Y N D L T L A ++ + VK L+E+GA I D+ +G LH AA G+ D
Sbjct: 68 YANVDGL-----TALHQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDI 121
Query: 132 LQALLT----------------------------------------AARTSPV------A 145
+ L++ AAR A
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA 181
Query: 146 NTWGFSRFVN-IRD-ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
W S +N +R +SG T LH+AA +G++E + L+ A Y G TPLH
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLH 237
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
AA G E R L+ D + G+ + +A
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 98 VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR 157
V + ++ LNF + +T LH A + +ALL A P +R
Sbjct: 27 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDP-----------ELR 74
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSST--------GGNGYPGSTPLHFAARGG 209
D G TPLHLA QG C+ ++ G L S T Y G T LH A+ G
Sbjct: 75 DFRGNTPLHLACEQG---CLASV---GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 210 SLECIRELLAWGAD-RVQPDAFGRIPYAIALKYKHQACAALL 250
L + L++ GAD Q GR +A+ ++ +LL
Sbjct: 129 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 11 SESALFVAVENGDLQMIEAMVEA--DPTVLGMTSGYGKQSALHLAAAYG---QIEVLSML 65
++ L +AV ++ EA++ A DP + + + LHLA G + VL+
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPEL----RDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 66 LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
L++ A N T L +A+++G L V+ L+ GA + + GRT LH A
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160
Query: 126 YGHSDCLQALL---------TAARTSPVANTWG 149
+ D + LL T SP TWG
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 193
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 23/160 (14%)
Query: 98 VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR 157
V + ++ LNF + +T LH A + +ALL A P +R
Sbjct: 24 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDP-----------ELR 71
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSS------TGGNGYPGSTPLHFAARGGSL 211
D G TPLHLA QG V L +C++ Y G T LH A+ G L
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQ----SCTTPHLHSILKATNYNGHTCLHLASIHGYL 127
Query: 212 ECIRELLAWGAD-RVQPDAFGRIPYAIALKYKHQACAALL 250
+ L++ GAD Q GR +A+ ++ +LL
Sbjct: 128 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 167
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 11 SESALFVAVENGDLQMIEAMVEA--DPTVLGMTSGYGKQSALHLAAAYG---QIEVLSML 65
++ L +AV ++ EA++ A DP + + + LHLA G + VL+
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPEL----RDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 66 LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
L++ A N T L +A+++G L V+ L+ GA + + GRT LH A
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 157
Query: 126 YGHSDCLQALL---------TAARTSPVANTWG 149
+ D + LL T SP TWG
Sbjct: 158 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 190
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 154 VNIRDESGA-TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLE 212
VN ++E G TPLH A + + V LL +GA G+TP AA GS++
Sbjct: 31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK----KNGATPFLLAAIAGSVK 86
Query: 213 CIRELLAWGADRVQPDAFGRIPYAIALKY 241
++ L+ GAD + D +G + A Y
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVY 115
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 38/179 (21%)
Query: 52 LAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI--- 108
LAA G +++L + L + + + + Y T M AA+ GK+ +K L + GA +
Sbjct: 78 LAAIAGSVKLLKLFLSK---GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
Query: 109 ----LNFDSLQ--GRTCLHYAAYYGHSDCLQ-------------------ALLTAARTSP 143
+ + L+ G T L AA GH + L+ AL+ A +S
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194
Query: 144 VANTWGFSRF-------VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG 195
++ + VN+R E G TPL LA + V LL+ + + T +G
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALH--LAAAYGQIEVLS- 63
R+ +AL A E G +++++ +++ + G+ + +H L++ +E ++
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203
Query: 64 MLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123
+LLD + + +TPL++A L V++L+E +N G+T L A
Sbjct: 204 LLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 154 VNIRDESGA-TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLE 212
VN ++E G TPLH A + + V LL +GA G+TP AA GS++
Sbjct: 51 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK----KNGATPFILAAIAGSVK 106
Query: 213 CIRELLAWGADRVQPDAFGRIPYAIALKY 241
++ L+ GAD + D +G + A Y
Sbjct: 107 LLKLFLSKGADVNECDFYGFTAFMEAAVY 135
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 38/179 (21%)
Query: 52 LAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI--- 108
LAA G +++L + L + + + + Y T M AA+ GK+ +K L + GA +
Sbjct: 98 LAAIAGSVKLLKLFLSK---GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
Query: 109 ----LNFDSLQ--GRTCLHYAAYYGHSDCLQ-------------------ALLTAARTSP 143
+ + L+ G T L AA GH + L+ AL+ A +S
Sbjct: 155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 214
Query: 144 VANTWGFSRF-------VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG 195
++ + VN+R E G TPL LA + V LL+ + + T +G
Sbjct: 215 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 273
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALH--LAAAYGQIEVLS- 63
R+ +AL A E G +++++ +++ + G+ + +H L++ +E ++
Sbjct: 164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 223
Query: 64 MLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
+LLD + + +TPL++A L V++L+E +N G+T L
Sbjct: 224 LLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D+ G + LH AA + LL NGA + TPL AAR GS E
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNKEETPLFLAAREGSYET 96
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251
+ LL A+R D R+P IA + H LL+
Sbjct: 97 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 134
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 159 ESGATPLHLAARQGWSECVHT---LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIR 215
E T LHLA R +H L+ N TG GST LH+ + EC++
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----KGSTALHYCCLTDNAECLK 222
Query: 216 ELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
LL A + G P IA + KH+ C LL
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
L+ + +G T LHY +++CL+ LL + +AN ESG TPL +A
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN------------ESGETPLDIA 245
Query: 169 ARQGWSEC 176
R C
Sbjct: 246 KRLKHEHC 253
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A L V +I++G L+ + G T LHYAA Y DCL+ LL
Sbjct: 201 ANQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKG----------- 248
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTL 180
V +E+G T L +A ++ EC L
Sbjct: 249 -RALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 165 LHLA---ARQGWSECVHTLLDNGA-LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW 220
LHLA A Q V ++ NG L + GN T LH+AA +C++ LL
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-----TALHYAALYNQPDCLKLLLKG 248
Query: 221 GADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQL 264
A + G IA K H+ C LL + A +PL +
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 292
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
A L V +I++G L+ + G T LHYAA Y DCL+ LL
Sbjct: 182 ANQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKG----------- 229
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTL 180
V +E+G T L +A ++ EC L
Sbjct: 230 -RALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 165 LHLA---ARQGWSECVHTLLDNGA-LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW 220
LHLA A Q V ++ NG L + GN T LH+AA +C++ LL
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-----TALHYAALYNQPDCLKLLLKG 229
Query: 221 GADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQL 264
A + G IA K H+ C LL + A +PL +
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 25/171 (14%)
Query: 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAM-----NGKLSCVKKLI 102
+ALH + ++ V+ LLD D NR +P+M+ A+ + V +L
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGV--CKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 103 ESGAFILNFDSLQ-GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161
G +N + Q G+T L A +G D ++ALL VN++D+ G
Sbjct: 171 RLGN--INAKASQAGQTALMLAVSHGRVDVVKALLACEAD------------VNVQDDDG 216
Query: 162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLE 212
+T L A G E LL A+ GST L A G E
Sbjct: 217 STALMCACEHGHKEIAGLLL---AVPSCDISLTDRDGSTALMVALDAGQSE 264
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 20/149 (13%)
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
+++N G T LHY+ + + +Q LL + G + V+ ++ +G +P+
Sbjct: 102 YVVNIADSNGNTALHYSVSHANFPVVQQLLDS----------GVCK-VDKQNRAGYSPIM 150
Query: 167 LAA-----RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221
L A Q E V L G + ++ G T L A G ++ ++ LLA
Sbjct: 151 LTALATLKTQDDIETVLQLFRLGNINAKAS----QAGQTALMLAVSHGRVDVVKALLACE 206
Query: 222 ADRVQPDAFGRIPYAIALKYKHQACAALL 250
AD D G A ++ H+ A LL
Sbjct: 207 ADVNVQDDDGSTALMCACEHGHKEIAGLL 235
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLI 102
G + L AAA GQ+E + LL+ + +ALNR+ + P+ V M G + L+
Sbjct: 9 GGSSDAGLATAAARGQVETVRQLLEA---GADPNALNRFGRRPIQVMMM-GSAQVAELLL 64
Query: 103 ESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF-VNIRDESG 161
GA D +H AA G D L L A V + WG R V++ +E G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG--RLPVDLAEEQG 122
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
+ P+H AAR G L+ + L GA DA+GR+P +A + H+ A L+ ++ +
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
L AA G +E +R+LL GAD + FGR P + + Q A LL AEP
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ-VAELLLLHGAEP 70
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 25/140 (17%)
Query: 112 DSLQGRTCLHYAA---YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE----SGATP 164
D G+TCL A + G +D + LL AR T +FVN G T
Sbjct: 50 DPETGKTCLLKAXLNLHNGQNDTIALLLDVAR-----KTDSLKQFVNASYTDSYYKGQTA 104
Query: 165 LHLAARQGWSECVHTLLDNGALACSSTGGN----------GYPGSTPLHFAARGGSLECI 214
LH+A + V L++NGA ++ G+ Y G PL AA L +
Sbjct: 105 LHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164
Query: 215 RELL--AWG-ADRVQPDAFG 231
+ LL +W AD D+ G
Sbjct: 165 KFLLQNSWQPADISARDSVG 184
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 22 GDLQMIEAMV-EADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80
G+ +++ ++ E D L G +ALH A G E++ L+ QF + N +A +
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGI---TALHNAVCAGHTEIVKFLV-QFGV--NVNAADS 101
Query: 81 YKQTPLMVAAMNGKLSCVKKLIESGA--FILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
TPL AA + K L+ESGA F + + +Q G++ C Q L
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161
Query: 139 ARTSPVAN 146
+ N
Sbjct: 162 QEKMGIMN 169
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFILNFDSL---QGRTCLHYAAYYGHSDCLQALLTAARTS 142
L+ +++ G+ V+++I + ++ SL +G T LH A GH++ ++ L+
Sbjct: 41 LLDSSLEGEFDLVQRII----YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ----- 91
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191
F VN D G TPLH AA + L+++GA + T
Sbjct: 92 -------FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 22 GDLQMIEAMV-EADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80
G+ +++ ++ E D L G +ALH A G E++ L+ QF + N +A +
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGI---TALHNAVCAGHTEIVKFLV-QFGV--NVNAADS 101
Query: 81 YKQTPLMVAAMNGKLSCVKKLIESGA--FILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
TPL AA + K L+ESGA F + + +Q G++ C Q L
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161
Query: 139 ARTSPVAN 146
+ N
Sbjct: 162 QEKMGIMN 169
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 80 RYKQTPLMV---AAMNGKLSCVKKLIESGAFILNFDSL---QGRTCLHYAAYYGHSDCLQ 133
R K PL + +++ G+ V+++I + ++ SL +G T LH A GH++ ++
Sbjct: 32 RVKFNPLALLLDSSLEGEFDLVQRII----YEVDDPSLPNDEGITALHNAVCAGHTEIVK 87
Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191
L+ F VN D G TPLH AA + L+++GA + T
Sbjct: 88 FLVQ------------FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 23/193 (11%)
Query: 73 TNTDALNRYKQ-----TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR---TCLHYAA 124
T+ LNR K + VAA G+ V++LIE+G ++Q R T LH A
Sbjct: 6 TDFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGV----SPTIQNRFGCTALHLAC 61
Query: 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE---CVHTLL 181
+G C+ A V + W + +++ + T L +A +G E +LL
Sbjct: 62 KFG---CVDTAKYLASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLL 118
Query: 182 DN-GALACSSTGGNGY--PGSTPLHFAARGGS--LECIRELLAWGADRVQPDAFGRIPYA 236
+ + G + G T LH+ G LE I+ L+ GA D P
Sbjct: 119 NECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLX 178
Query: 237 IALKYKHQACAAL 249
A +++++ L
Sbjct: 179 RAXEFRNREALDL 191
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232
G+TPLH+ +LE ++ L+ G++R+ D G
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 148 WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
W + +N +D +G T L++AAR G V LLD GA
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 151 SRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP--GSTPLHFAARG 208
S +V + ES PLH AA++G + LDN G NG GST L++A G
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN------RVGVNGLDKAGSTALYWACHG 116
Query: 209 GSLECIRELL 218
G + + L
Sbjct: 117 GHKDIVEXLF 126
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
VN D++G+T L+ A G + V L + + G T LH AA G +
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ---QNKLGDTALHAAAWKGYADI 155
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLV 259
++ LLA GA + ++ + A + ACA+LL V
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDXA---TNAACASLLKKKQGTDAV 198
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 307 SDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPE 365
SD V++ + C +C + +I PCGH +C C P
Sbjct: 10 SDLPVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCA---------------PS 54
Query: 366 VPACPFCRCSIANLV 380
+ CP CR +I V
Sbjct: 55 LRKCPICRSTIKGTV 69
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
+ P+H AAR G L+ + L GA DA+GR+P +A + H+ A L
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251
+ P+H AAR G L+ + L GA DA+GR+P +A + H+ A L
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
>pdb|3A6H|A Chain A, W154a Mutant Creatininase
pdb|3A6H|B Chain B, W154a Mutant Creatininase
pdb|3A6H|C Chain C, W154a Mutant Creatininase
pdb|3A6H|D Chain D, W154a Mutant Creatininase
pdb|3A6H|E Chain E, W154a Mutant Creatininase
pdb|3A6H|F Chain F, W154a Mutant Creatininase
Length = 260
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 189 SSTGGNGYPGSTPLHFAARGGSLE-CIRELLAWGADRV 225
S GGN +PG+T L A G+++ IREL GA R+
Sbjct: 77 KSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRL 114
>pdb|3A6G|A Chain A, W154f Mutant Creatininase
pdb|3A6G|B Chain B, W154f Mutant Creatininase
pdb|3A6G|C Chain C, W154f Mutant Creatininase
pdb|3A6G|D Chain D, W154f Mutant Creatininase
pdb|3A6G|E Chain E, W154f Mutant Creatininase
pdb|3A6G|F Chain F, W154f Mutant Creatininase
Length = 260
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 189 SSTGGNGYPGSTPLHFAARGGSLE-CIRELLAWGADRV 225
S GGN +PG+T L A G+++ IREL GA R+
Sbjct: 77 KSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRL 114
>pdb|3A6E|A Chain A, W174f Mutant Creatininase, Type I
pdb|3A6E|B Chain B, W174f Mutant Creatininase, Type I
pdb|3A6E|C Chain C, W174f Mutant Creatininase, Type I
pdb|3A6E|D Chain D, W174f Mutant Creatininase, Type I
pdb|3A6E|E Chain E, W174f Mutant Creatininase, Type I
pdb|3A6E|F Chain F, W174f Mutant Creatininase, Type I
pdb|3A6F|A Chain A, W174f Mutant Creatininase, Type Ii
pdb|3A6F|B Chain B, W174f Mutant Creatininase, Type Ii
pdb|3A6F|C Chain C, W174f Mutant Creatininase, Type Ii
pdb|3A6F|D Chain D, W174f Mutant Creatininase, Type Ii
pdb|3A6F|E Chain E, W174f Mutant Creatininase, Type Ii
pdb|3A6F|F Chain F, W174f Mutant Creatininase, Type Ii
Length = 260
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 189 SSTGGNGYPGSTPLHFAARGGSLE-CIRELLAWGADRV 225
S GGN +PG+T L A G+++ IREL GA R+
Sbjct: 77 KSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRL 114
>pdb|3A6J|A Chain A, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|B Chain B, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|C Chain C, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|D Chain D, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|E Chain E, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|F Chain F, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6K|A Chain A, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|B Chain B, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|C Chain C, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|D Chain D, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|E Chain E, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|F Chain F, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6L|A Chain A, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|B Chain B, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|C Chain C, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|D Chain D, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|E Chain E, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|F Chain F, E122q Mutant Creatininase, Zn-Zn Type
Length = 260
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 189 SSTGGNGYPGSTPLHFAARGGSLE-CIRELLAWGADRV 225
S GGN +PG+T L A G+++ IREL GA R+
Sbjct: 77 KSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRL 114
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 69/183 (37%), Gaps = 41/183 (22%)
Query: 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSG-----------YGKQSALHLAAAYGQ 58
R SAL +A+E LQ ++ +VE V G Y + L LAA Q
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 59 IEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT 118
+V+S LL+ P + A + + + V A + D+
Sbjct: 154 WDVVSYLLEN-------------PHQPASLQATDSQGNTVLH-----ALVXISDNSAENI 195
Query: 119 CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVH 178
L + Y G LQA AR P + +IR+ TPL LAA++G E
Sbjct: 196 ALVTSXYDG---LLQA---GARLCPTV------QLEDIRNLQDLTPLKLAAKEGKIEIFR 243
Query: 179 TLL 181
+L
Sbjct: 244 HIL 246
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 116 GRTCLHYAAYY---GHSDCLQALLTAARTS----PVANTWGFSRFVNIRDESGATPLHLA 168
G+TCL A G + C+ LL R S P+ N + G + LH+A
Sbjct: 48 GKTCLXKAVLNLKDGVNACILPLLQIDRDSGNPQPLVNAQCTDDYYR-----GHSALHIA 102
Query: 169 ARQGWSECVHTLLDNG----ALACSSTGGNG-----YPGSTPLHFAA 206
+ +CV L++NG A AC G Y G PL AA
Sbjct: 103 IEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAA 149
>pdb|1J2T|A Chain A, Creatininase Mn
pdb|1J2T|B Chain B, Creatininase Mn
pdb|1J2T|C Chain C, Creatininase Mn
pdb|1J2T|D Chain D, Creatininase Mn
pdb|1J2T|E Chain E, Creatininase Mn
pdb|1J2T|F Chain F, Creatininase Mn
pdb|1J2U|A Chain A, Creatininase Zn
pdb|1J2U|B Chain B, Creatininase Zn
pdb|1J2U|C Chain C, Creatininase Zn
pdb|1J2U|D Chain D, Creatininase Zn
pdb|1J2U|E Chain E, Creatininase Zn
pdb|1J2U|F Chain F, Creatininase Zn
pdb|1V7Z|A Chain A, Creatininase-Product Complex
pdb|1V7Z|B Chain B, Creatininase-Product Complex
pdb|1V7Z|C Chain C, Creatininase-Product Complex
pdb|1V7Z|D Chain D, Creatininase-Product Complex
pdb|1V7Z|E Chain E, Creatininase-Product Complex
pdb|1V7Z|F Chain F, Creatininase-Product Complex
pdb|3A6D|A Chain A, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|B Chain B, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|C Chain C, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|D Chain D, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|E Chain E, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|F Chain F, Creatininase Complexed With 1-Methylguanidine
Length = 260
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 189 SSTGGNGYPGSTPLHFAARGGSLE-CIRELLAWGADRV 225
S GGN +PG+T L A G+++ IREL GA R+
Sbjct: 77 KSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRL 114
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 293 ILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGH-QMCAHCTLAL 351
+++ + +P+ S +++ + C +C + ++ PCGH +C C
Sbjct: 267 FVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECA--- 323
Query: 352 CCHKKPDIITAVPEVPACPFCRCSIANLV 380
P + CP CR I V
Sbjct: 324 ------------PSLRKCPICRGIIKGTV 340
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 37/159 (23%)
Query: 86 LMVAAMNGKLSCVKKLIESGAFI------LNFDSLQGRTCLHY-------AAYYGHSDCL 132
L +A L CVK L+E+GA + F QG TC ++ AA D +
Sbjct: 107 LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQG-TCFYFGELPLSLAACTKQWDVV 165
Query: 133 QALL-------TAARTSPVANTWGFSRFVNIRD---ESGATPLHLAARQGWSECVHTLLD 182
LL + T + NT V I D E+ A +H+ LL
Sbjct: 166 TYLLENPHQPASLEATDSLGNTV-LHALVMIADNSPENSALVIHM---------YDGLLQ 215
Query: 183 NGALACSSTG---GNGYPGSTPLHFAARGGSLECIRELL 218
GA C + + + G TPL AA+ G +E R +L
Sbjct: 216 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 254
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 21/119 (17%)
Query: 116 GRTCLHYAAYY---GHSDCLQALLTAARTS----PVANTWGFSRFVNIRDESGATPLHLA 168
G+TCL A G + C+ LL + S P+ N F G + LH+A
Sbjct: 56 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQ-----GHSALHIA 110
Query: 169 ARQGWSECVHTLLDNGA----LAC-----SSTGGNGYPGSTPLHFAARGGSLECIRELL 218
+ +CV L++NGA AC G Y G PL AA + + LL
Sbjct: 111 IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 169
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 63/162 (38%), Gaps = 37/162 (22%)
Query: 83 QTPLMVAAMNGKLSCVKKLIESGAFI------LNFDSLQGRTCLHY-------AAYYGHS 129
+ L +A L CVK L+E+GA + F QG TC ++ AA
Sbjct: 91 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQG-TCFYFGELPLSLAACTKQW 149
Query: 130 DCLQALL-------TAARTSPVANTWGFSRFVNIRD---ESGATPLHLAARQGWSECVHT 179
D + LL + T + NT V I D E+ A +H+
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTV-LHALVMIADNSPENSALVIHM---------YDG 199
Query: 180 LLDNGALACSSTG---GNGYPGSTPLHFAARGGSLECIRELL 218
LL GA C + + + G TPL AA+ G +E R +L
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 116 GRTCLHYAAYY---GHSDCLQALLTAARTS----PVANTWGFSRFVNIRDESGATPLHLA 168
G+TCL A G + C+ LL + S P+ N F G + LH+A
Sbjct: 43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQ-----GHSALHIA 97
Query: 169 ARQGWSECVHTLLDNGA----LAC-----SSTGGNGYPGSTPLHFAA 206
+ +CV L++NGA AC G Y G PL AA
Sbjct: 98 IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,564,936
Number of Sequences: 62578
Number of extensions: 490560
Number of successful extensions: 2055
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 447
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)