Query 012618
Match_columns 460
No_of_seqs 595 out of 2812
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02791 ankyrin-like protein; 100.0 3E-38 6.4E-43 299.7 24.7 217 7-256 26-245 (284)
2 PHA03100 ankyrin repeat protei 100.0 4.3E-38 9.3E-43 325.3 26.2 259 8-298 32-307 (480)
3 PHA02875 ankyrin repeat protei 100.0 8.2E-38 1.8E-42 317.0 27.4 228 11-259 2-230 (413)
4 KOG4412 26S proteasome regulat 100.0 8.6E-39 1.9E-43 267.9 16.4 210 11-240 3-213 (226)
5 PHA03095 ankyrin-like protein; 100.0 1.3E-37 2.8E-42 321.0 27.9 264 2-297 37-313 (471)
6 PHA02874 ankyrin repeat protei 100.0 2.2E-37 4.8E-42 315.5 28.2 258 8-296 32-311 (434)
7 PHA02791 ankyrin-like protein; 100.0 3.3E-37 7.1E-42 292.5 26.4 213 21-261 9-224 (284)
8 PHA02946 ankyin-like protein; 100.0 5.8E-37 1.3E-41 311.0 27.9 264 12-298 38-321 (446)
9 PHA02946 ankyin-like protein; 100.0 1.2E-36 2.6E-41 308.7 26.5 266 2-297 62-346 (446)
10 PHA02716 CPXV016; CPX019; EVM0 100.0 2.2E-36 4.8E-41 316.3 26.2 263 3-297 167-563 (764)
11 PHA03100 ankyrin repeat protei 100.0 2.3E-36 5.1E-41 312.4 26.1 236 2-259 58-311 (480)
12 PHA02874 ankyrin repeat protei 100.0 1.7E-35 3.7E-40 301.6 29.0 252 13-296 3-277 (434)
13 PHA02878 ankyrin repeat protei 100.0 1.2E-35 2.6E-40 306.3 25.4 240 10-285 36-311 (477)
14 PHA02716 CPXV016; CPX019; EVM0 100.0 1.3E-35 2.8E-40 310.6 24.5 241 2-260 202-569 (764)
15 PHA03095 ankyrin-like protein; 100.0 3E-35 6.4E-40 303.4 26.9 235 2-258 73-317 (471)
16 PHA02876 ankyrin repeat protei 100.0 1.1E-34 2.3E-39 311.7 29.7 266 2-296 168-465 (682)
17 KOG0510 Ankyrin repeat protein 100.0 8.9E-36 1.9E-40 299.4 19.1 273 9-298 119-401 (929)
18 PHA02989 ankyrin repeat protei 100.0 9.7E-35 2.1E-39 300.5 26.9 262 2-296 26-311 (494)
19 KOG4412 26S proteasome regulat 100.0 8.3E-36 1.8E-40 250.0 14.8 196 46-260 3-201 (226)
20 KOG0510 Ankyrin repeat protein 100.0 4.7E-35 1E-39 294.2 21.1 245 2-263 144-409 (929)
21 PHA02876 ankyrin repeat protei 100.0 1.1E-34 2.4E-39 311.6 25.0 270 8-296 38-397 (682)
22 PHA02798 ankyrin-like protein; 100.0 6.4E-34 1.4E-38 294.1 25.8 234 9-260 34-320 (489)
23 PHA02989 ankyrin repeat protei 100.0 1.9E-33 4.1E-38 290.9 26.1 232 2-255 60-313 (494)
24 PHA02875 ankyrin repeat protei 100.0 1.7E-33 3.6E-38 285.5 24.9 224 46-297 2-225 (413)
25 KOG0509 Ankyrin repeat and DHH 100.0 4.9E-34 1.1E-38 282.1 18.0 208 12-241 45-255 (600)
26 PHA02878 ankyrin repeat protei 100.0 4.9E-33 1.1E-37 286.8 25.4 226 2-253 60-323 (477)
27 PHA02917 ankyrin-like protein; 100.0 9.6E-33 2.1E-37 290.6 27.8 262 8-297 29-509 (661)
28 PHA02798 ankyrin-like protein; 100.0 5.6E-31 1.2E-35 272.2 24.0 241 23-296 17-313 (489)
29 KOG0509 Ankyrin repeat and DHH 100.0 2.9E-31 6.3E-36 262.5 16.9 210 47-284 45-255 (600)
30 KOG4177 Ankyrin [Cell wall/mem 100.0 8E-32 1.7E-36 286.9 11.9 262 6-299 369-631 (1143)
31 PHA02730 ankyrin-like protein; 100.0 1.5E-29 3.3E-34 260.2 24.5 170 8-182 38-258 (672)
32 PHA02859 ankyrin repeat protei 100.0 1.1E-29 2.4E-34 232.4 20.9 176 45-242 20-203 (209)
33 PHA02917 ankyrin-like protein; 100.0 2.7E-29 5.8E-34 264.5 25.2 213 24-258 12-257 (661)
34 PHA02730 ankyrin-like protein; 100.0 7E-29 1.5E-33 255.4 23.9 255 23-296 19-404 (672)
35 KOG0508 Ankyrin repeat protein 100.0 7.6E-30 1.7E-34 242.5 14.8 217 16-252 9-236 (615)
36 KOG0508 Ankyrin repeat protein 100.0 4.8E-30 1E-34 243.9 13.2 193 6-219 37-236 (615)
37 PHA02795 ankyrin-like protein; 100.0 7.3E-29 1.6E-33 244.2 21.0 211 26-259 64-290 (437)
38 KOG4177 Ankyrin [Cell wall/mem 100.0 1.1E-29 2.3E-34 270.7 12.9 228 8-257 404-632 (1143)
39 PHA02859 ankyrin repeat protei 100.0 4.7E-28 1E-32 221.6 20.9 177 8-209 18-203 (209)
40 PHA02792 ankyrin-like protein; 100.0 6.1E-28 1.3E-32 245.9 23.2 255 9-283 69-452 (631)
41 PHA02792 ankyrin-like protein; 100.0 1.2E-27 2.6E-32 243.7 22.3 235 2-258 95-480 (631)
42 PHA02795 ankyrin-like protein; 100.0 6E-28 1.3E-32 237.7 18.8 213 17-255 83-314 (437)
43 KOG0502 Integral membrane anky 99.9 1.9E-27 4.2E-32 205.5 10.0 222 9-254 60-281 (296)
44 PLN03192 Voltage-dependent pot 99.9 2.9E-25 6.3E-30 242.2 23.8 176 45-242 524-700 (823)
45 KOG0507 CASK-interacting adapt 99.9 3.8E-26 8.2E-31 228.7 14.6 230 13-259 5-249 (854)
46 TIGR00870 trp transient-recept 99.9 7.1E-26 1.5E-30 245.5 16.8 231 10-253 16-279 (743)
47 KOG0507 CASK-interacting adapt 99.9 1.9E-25 4E-30 223.8 15.7 231 8-253 46-279 (854)
48 KOG0502 Integral membrane anky 99.9 2.7E-26 5.9E-31 198.4 7.2 207 5-236 90-296 (296)
49 PLN03192 Voltage-dependent pot 99.9 6.4E-24 1.4E-28 231.7 22.9 164 79-261 522-685 (823)
50 TIGR00870 trp transient-recept 99.9 8.9E-24 1.9E-28 229.1 15.2 241 44-296 15-279 (743)
51 KOG0505 Myosin phosphatase, re 99.9 2E-23 4.3E-28 202.9 12.1 218 13-240 42-273 (527)
52 KOG0514 Ankyrin repeat protein 99.9 2.1E-23 4.6E-28 193.0 10.8 160 75-251 261-427 (452)
53 KOG0514 Ankyrin repeat protein 99.9 4.8E-23 1E-27 190.7 11.7 161 42-220 264-429 (452)
54 PHA02743 Viral ankyrin protein 99.9 3.9E-22 8.5E-27 175.8 15.1 144 72-232 10-162 (166)
55 KOG4369 RTK signaling protein 99.9 5.3E-23 1.2E-27 211.7 7.5 261 9-298 755-1018(2131)
56 KOG0505 Myosin phosphatase, re 99.9 1.7E-21 3.7E-26 189.4 15.3 217 49-273 43-273 (527)
57 PHA02741 hypothetical protein; 99.9 4.2E-21 9.2E-26 169.9 13.5 136 111-256 16-157 (169)
58 PHA02743 Viral ankyrin protein 99.9 4.2E-21 9.1E-26 169.2 13.1 139 105-260 10-157 (166)
59 KOG4369 RTK signaling protein 99.9 2.2E-22 4.7E-27 207.3 5.0 280 2-297 780-1083(2131)
60 PHA02884 ankyrin repeat protei 99.9 1.3E-20 2.9E-25 179.0 16.5 150 46-222 33-186 (300)
61 PHA02741 hypothetical protein; 99.8 1.5E-20 3.3E-25 166.3 14.9 126 79-221 18-155 (169)
62 PHA02736 Viral ankyrin protein 99.8 8.3E-21 1.8E-25 165.5 9.6 138 110-258 11-153 (154)
63 PHA02884 ankyrin repeat protei 99.8 6.8E-20 1.5E-24 174.2 16.5 151 11-185 33-186 (300)
64 PHA02736 Viral ankyrin protein 99.8 4.1E-20 8.8E-25 161.1 11.4 132 76-225 11-153 (154)
65 KOG0512 Fetal globin-inducing 99.8 1.4E-18 3.1E-23 145.4 12.8 143 84-242 65-209 (228)
66 KOG0512 Fetal globin-inducing 99.8 5.5E-18 1.2E-22 141.9 13.6 143 14-172 66-209 (228)
67 KOG3676 Ca2+-permeable cation 99.8 9.3E-18 2E-22 171.1 16.0 195 12-220 102-330 (782)
68 KOG0195 Integrin-linked kinase 99.7 1.3E-18 2.8E-23 156.8 6.0 117 72-205 24-140 (448)
69 KOG0195 Integrin-linked kinase 99.7 1.5E-17 3.2E-22 150.0 10.1 153 19-188 8-160 (448)
70 KOG3676 Ca2+-permeable cation 99.7 3.5E-17 7.6E-22 167.0 14.2 199 48-253 103-330 (782)
71 cd00204 ANK ankyrin repeats; 99.7 1.8E-16 3.9E-21 131.8 15.5 124 112-251 3-126 (126)
72 PF12796 Ank_2: Ankyrin repeat 99.7 6.1E-17 1.3E-21 127.2 10.8 63 161-227 26-88 (89)
73 PF12796 Ank_2: Ankyrin repeat 99.7 7.2E-17 1.6E-21 126.8 10.9 85 15-108 1-85 (89)
74 cd00204 ANK ankyrin repeats; 99.7 4.3E-16 9.3E-21 129.6 15.2 122 79-217 4-125 (126)
75 KOG4214 Myotrophin and similar 99.6 2.5E-15 5.4E-20 112.8 9.6 104 12-122 3-106 (117)
76 COG0666 Arp FOG: Ankyrin repea 99.6 1.1E-13 2.3E-18 127.6 18.2 131 75-221 66-203 (235)
77 COG0666 Arp FOG: Ankyrin repea 99.6 5.7E-14 1.2E-18 129.4 15.0 127 43-184 70-203 (235)
78 KOG4214 Myotrophin and similar 99.6 2.6E-14 5.7E-19 107.4 9.7 101 85-203 5-105 (117)
79 KOG1710 MYND Zn-finger and ank 99.5 3.1E-13 6.6E-18 122.3 11.1 123 115-252 11-133 (396)
80 KOG1710 MYND Zn-finger and ank 99.4 8.9E-13 1.9E-17 119.3 10.8 118 48-180 14-131 (396)
81 KOG0515 p53-interacting protei 99.4 7.8E-13 1.7E-17 128.4 10.3 122 13-139 552-675 (752)
82 PF13857 Ank_5: Ankyrin repeat 99.4 1.9E-13 4E-18 97.0 4.5 55 180-238 1-56 (56)
83 PF13637 Ank_4: Ankyrin repeat 99.4 3.8E-13 8.3E-18 94.8 5.5 54 198-251 1-54 (54)
84 PTZ00322 6-phosphofructo-2-kin 99.4 1.9E-12 4.2E-17 137.9 12.3 106 118-239 84-196 (664)
85 PF13637 Ank_4: Ankyrin repeat 99.4 1.1E-12 2.5E-17 92.4 6.5 54 46-102 1-54 (54)
86 PTZ00322 6-phosphofructo-2-kin 99.4 3.5E-12 7.7E-17 135.9 11.8 86 49-138 85-170 (664)
87 KOG0515 p53-interacting protei 99.3 6.7E-12 1.5E-16 122.0 9.5 122 47-183 551-674 (752)
88 PF13857 Ank_5: Ankyrin repeat 99.3 2.9E-12 6.2E-17 90.9 4.6 50 73-123 7-56 (56)
89 KOG0823 Predicted E3 ubiquitin 99.3 1.3E-11 2.7E-16 109.2 7.3 77 319-403 45-127 (230)
90 PF13920 zf-C3HC4_3: Zinc fing 99.2 1.6E-11 3.4E-16 84.8 3.5 47 322-379 3-50 (50)
91 PLN03208 E3 ubiquitin-protein 99.0 1.9E-09 4.1E-14 93.9 7.9 65 320-384 17-86 (193)
92 KOG4265 Predicted E3 ubiquitin 98.9 8.6E-10 1.9E-14 103.8 3.1 59 317-386 286-345 (349)
93 KOG4172 Predicted E3 ubiquitin 98.9 2.2E-10 4.7E-15 76.2 -1.1 51 322-382 8-59 (62)
94 KOG0317 Predicted E3 ubiquitin 98.9 1.4E-09 3.1E-14 99.1 3.4 47 321-378 239-285 (293)
95 KOG0818 GTPase-activating prot 98.8 8.1E-09 1.8E-13 100.2 8.0 95 154-251 120-220 (669)
96 KOG0506 Glutaminase (contains 98.8 4.9E-09 1.1E-13 101.2 5.3 90 11-104 506-595 (622)
97 PF13606 Ank_3: Ankyrin repeat 98.8 7.5E-09 1.6E-13 62.8 3.8 29 197-225 1-29 (30)
98 KOG0782 Predicted diacylglycer 98.7 2.8E-08 6E-13 97.9 8.6 96 154-251 892-987 (1004)
99 KOG0506 Glutaminase (contains 98.7 1.1E-08 2.5E-13 98.7 5.3 95 156-254 501-596 (622)
100 PF00023 Ank: Ankyrin repeat H 98.7 1.8E-08 3.8E-13 62.9 4.2 33 197-229 1-33 (33)
101 KOG4275 Predicted E3 ubiquitin 98.7 1.4E-09 3E-14 98.5 -1.8 47 321-382 300-347 (350)
102 KOG0783 Uncharacterized conser 98.7 1.1E-08 2.5E-13 104.7 4.2 84 154-241 45-129 (1267)
103 PHA02929 N1R/p28-like protein; 98.7 2.5E-08 5.4E-13 91.0 5.1 54 320-384 173-234 (238)
104 KOG0705 GTPase-activating prot 98.6 5.5E-08 1.2E-12 96.2 7.4 95 164-258 627-721 (749)
105 KOG0782 Predicted diacylglycer 98.6 6.9E-08 1.5E-12 95.1 8.0 101 165-269 870-972 (1004)
106 KOG1785 Tyrosine kinase negati 98.6 1E-08 2.2E-13 96.8 1.9 56 318-382 366-421 (563)
107 KOG0783 Uncharacterized conser 98.6 2.5E-08 5.4E-13 102.3 3.9 79 43-125 49-128 (1267)
108 KOG0818 GTPase-activating prot 98.6 4.7E-07 1E-11 88.2 11.8 97 75-183 120-222 (669)
109 KOG1571 Predicted E3 ubiquitin 98.6 1.5E-08 3.3E-13 95.5 1.4 55 314-383 298-353 (355)
110 PF13923 zf-C3HC4_2: Zinc fing 98.5 6.1E-08 1.3E-12 62.9 2.9 38 324-372 1-39 (39)
111 PF13639 zf-RING_2: Ring finge 98.5 3.7E-08 8E-13 65.8 1.9 40 323-373 2-44 (44)
112 PF15227 zf-C3HC4_4: zinc fing 98.5 9.5E-08 2.1E-12 62.8 3.1 42 324-372 1-42 (42)
113 PHA02926 zinc finger-like prot 98.5 7.7E-08 1.7E-12 84.7 3.1 61 319-384 168-237 (242)
114 PF13606 Ank_3: Ankyrin repeat 98.5 1.7E-07 3.6E-12 56.8 3.6 22 47-68 3-24 (30)
115 KOG0522 Ankyrin repeat protein 98.5 2.6E-07 5.6E-12 91.1 7.0 86 163-250 22-107 (560)
116 KOG0522 Ankyrin repeat protein 98.5 4.2E-07 9.1E-12 89.6 8.3 86 15-103 24-109 (560)
117 KOG0705 GTPase-activating prot 98.5 4.6E-07 9.9E-12 89.8 8.3 88 50-141 628-719 (749)
118 PF00023 Ank: Ankyrin repeat H 98.5 2.6E-07 5.7E-12 57.5 4.2 31 46-79 2-32 (33)
119 KOG3609 Receptor-activated Ca2 98.4 1.2E-06 2.6E-11 91.3 9.8 124 10-143 24-158 (822)
120 KOG0320 Predicted E3 ubiquitin 98.4 3E-07 6.4E-12 78.1 3.7 46 322-378 132-179 (187)
121 KOG3609 Receptor-activated Ca2 98.4 1.2E-06 2.5E-11 91.3 8.6 126 115-259 24-159 (822)
122 COG5574 PEX10 RING-finger-cont 98.3 2.6E-07 5.5E-12 83.5 2.0 46 322-377 216-262 (271)
123 PF14634 zf-RING_5: zinc-RING 98.3 5.6E-07 1.2E-11 60.0 2.7 40 324-374 2-44 (44)
124 KOG0521 Putative GTPase activa 98.3 6.6E-07 1.4E-11 95.6 4.2 91 157-251 652-742 (785)
125 PF00097 zf-C3HC4: Zinc finger 98.2 1.4E-06 3E-11 57.2 3.2 40 324-372 1-41 (41)
126 KOG2164 Predicted E3 ubiquitin 98.2 1.1E-06 2.5E-11 86.6 3.9 58 321-384 186-245 (513)
127 cd00162 RING RING-finger (Real 98.1 2.1E-06 4.5E-11 57.3 3.1 44 323-376 1-45 (45)
128 KOG0520 Uncharacterized conser 98.1 5E-06 1.1E-10 88.6 6.9 134 41-183 569-702 (975)
129 TIGR00599 rad18 DNA repair pro 98.1 3.3E-06 7.2E-11 82.9 4.1 48 320-378 25-72 (397)
130 KOG0511 Ankyrin repeat protein 98.0 2.7E-05 5.8E-10 73.9 9.2 74 48-126 38-111 (516)
131 smart00504 Ubox Modified RING 98.0 7.2E-06 1.6E-10 59.4 4.1 46 322-378 2-47 (63)
132 KOG0520 Uncharacterized conser 97.9 1.1E-05 2.4E-10 86.0 5.7 132 76-220 568-702 (975)
133 smart00184 RING Ring finger. E 97.9 9.2E-06 2E-10 52.1 3.2 39 324-372 1-39 (39)
134 PF13445 zf-RING_UBOX: RING-ty 97.9 7.8E-06 1.7E-10 53.7 2.3 31 324-355 1-35 (43)
135 KOG0521 Putative GTPase activa 97.9 1.5E-05 3.2E-10 85.4 5.4 90 44-137 654-743 (785)
136 PF12678 zf-rbx1: RING-H2 zinc 97.9 1.3E-05 2.9E-10 59.6 3.6 41 322-373 20-73 (73)
137 KOG2384 Major histocompatibili 97.8 4.5E-05 9.7E-10 65.9 6.6 70 72-141 2-71 (223)
138 COG5243 HRD1 HRD ubiquitin lig 97.8 4.6E-05 9.9E-10 72.0 6.7 48 319-377 285-345 (491)
139 KOG2384 Major histocompatibili 97.8 6.4E-05 1.4E-09 64.9 6.4 72 154-228 5-76 (223)
140 TIGR00570 cdk7 CDK-activating 97.7 2.7E-05 5.9E-10 73.4 4.0 48 321-378 3-55 (309)
141 COG5432 RAD18 RING-finger-cont 97.7 1.6E-05 3.4E-10 72.6 2.2 45 321-376 25-69 (391)
142 KOG0511 Ankyrin repeat protein 97.7 0.00015 3.3E-09 68.9 8.7 58 117-186 37-94 (516)
143 KOG2505 Ankyrin repeat protein 97.7 0.00019 4.1E-09 70.6 8.6 69 173-241 403-473 (591)
144 KOG1100 Predicted E3 ubiquitin 97.6 1.8E-05 3.9E-10 71.4 1.2 45 324-383 161-206 (207)
145 COG5540 RING-finger-containing 97.6 4.2E-05 9.1E-10 70.4 2.4 46 321-376 323-371 (374)
146 KOG4628 Predicted E3 ubiquitin 97.5 9.4E-05 2E-09 71.0 4.3 47 322-378 230-279 (348)
147 KOG0287 Postreplication repair 97.5 3.5E-05 7.6E-10 71.9 1.2 46 321-377 23-68 (442)
148 KOG4692 Predicted E3 ubiquitin 97.5 7.9E-05 1.7E-09 69.9 3.4 54 318-382 419-472 (489)
149 COG5236 Uncharacterized conser 97.5 8.3E-05 1.8E-09 69.5 3.1 59 316-383 56-114 (493)
150 PF14447 Prok-RING_4: Prokaryo 97.3 0.00014 3E-09 49.5 1.6 46 320-378 6-51 (55)
151 KOG0824 Predicted E3 ubiquitin 97.2 0.00013 2.9E-09 67.3 1.5 54 321-384 7-60 (324)
152 KOG1039 Predicted E3 ubiquitin 97.2 0.00024 5.3E-09 68.6 2.8 61 319-383 159-227 (344)
153 PF04564 U-box: U-box domain; 97.1 0.00044 9.5E-09 51.6 3.1 51 321-381 4-54 (73)
154 KOG2177 Predicted E3 ubiquitin 97.1 0.00022 4.7E-09 69.6 1.5 44 320-374 12-55 (386)
155 PF12861 zf-Apc11: Anaphase-pr 97.1 0.00055 1.2E-08 51.6 3.2 35 334-376 47-81 (85)
156 KOG0978 E3 ubiquitin ligase in 97.0 0.00016 3.4E-09 75.3 -0.3 52 316-377 638-689 (698)
157 KOG0802 E3 ubiquitin ligase [P 96.9 0.00032 6.9E-09 73.5 1.5 48 319-377 289-341 (543)
158 smart00248 ANK ankyrin repeats 96.9 0.0019 4.1E-08 37.4 3.9 27 198-224 2-28 (30)
159 PF14835 zf-RING_6: zf-RING of 96.7 0.00059 1.3E-08 48.2 1.0 42 322-376 8-50 (65)
160 KOG4159 Predicted E3 ubiquitin 96.7 0.00093 2E-08 66.0 2.5 50 319-379 82-131 (398)
161 COG5152 Uncharacterized conser 96.5 0.00097 2.1E-08 57.7 0.9 51 321-382 196-246 (259)
162 PF07800 DUF1644: Protein of u 96.5 0.0045 9.8E-08 52.1 4.7 62 322-383 3-97 (162)
163 KOG2505 Ankyrin repeat protein 96.4 0.0052 1.1E-07 60.9 5.2 66 22-90 402-471 (591)
164 KOG1813 Predicted E3 ubiquitin 96.3 0.0015 3.2E-08 60.4 0.9 50 322-382 242-291 (313)
165 PF03158 DUF249: Multigene fam 96.2 0.027 5.9E-07 49.0 8.1 138 84-252 48-191 (192)
166 smart00248 ANK ankyrin repeats 96.2 0.0087 1.9E-07 34.4 3.7 18 49-66 5-22 (30)
167 KOG4739 Uncharacterized protei 96.1 0.0033 7.2E-08 56.9 2.0 42 322-376 4-47 (233)
168 PF06128 Shigella_OspC: Shigel 96.0 0.056 1.2E-06 48.5 9.1 48 174-222 230-278 (284)
169 PF06128 Shigella_OspC: Shigel 95.9 0.042 9E-07 49.3 8.3 47 209-255 228-278 (284)
170 KOG0825 PHD Zn-finger protein 95.8 0.0084 1.8E-07 62.3 4.0 52 323-385 125-179 (1134)
171 KOG0311 Predicted E3 ubiquitin 95.4 0.0015 3.3E-08 61.9 -2.7 53 322-384 44-97 (381)
172 KOG3002 Zn finger protein [Gen 95.4 0.0093 2E-07 56.9 2.2 48 317-379 44-93 (299)
173 KOG1734 Predicted RING-contain 95.3 0.0062 1.3E-07 55.5 0.8 49 320-377 223-281 (328)
174 KOG0828 Predicted E3 ubiquitin 95.3 0.0089 1.9E-07 59.0 1.7 50 318-377 568-634 (636)
175 KOG2879 Predicted E3 ubiquitin 95.2 0.068 1.5E-06 49.2 7.1 54 318-380 236-290 (298)
176 PF03158 DUF249: Multigene fam 94.9 0.52 1.1E-05 41.2 11.4 140 48-219 48-191 (192)
177 COG5219 Uncharacterized conser 94.7 0.014 3.1E-07 62.0 1.6 51 319-378 1467-1524(1525)
178 KOG0804 Cytoplasmic Zn-finger 94.6 0.024 5.2E-07 55.6 2.8 47 318-377 172-222 (493)
179 PF14570 zf-RING_4: RING/Ubox 93.8 0.056 1.2E-06 36.1 2.4 28 338-375 19-46 (48)
180 PF11793 FANCL_C: FANCL C-term 93.7 0.023 4.9E-07 41.9 0.5 56 322-377 3-66 (70)
181 KOG1814 Predicted E3 ubiquitin 93.5 0.035 7.6E-07 53.9 1.4 51 322-375 185-238 (445)
182 PF05290 Baculo_IE-1: Baculovi 93.4 0.053 1.2E-06 44.2 2.2 49 321-377 80-132 (140)
183 KOG1001 Helicase-like transcri 93.2 0.039 8.5E-07 58.8 1.5 51 322-382 455-505 (674)
184 PF04641 Rtf2: Rtf2 RING-finge 93.0 0.11 2.4E-06 49.0 4.1 59 320-390 112-174 (260)
185 smart00744 RINGv The RING-vari 92.9 0.088 1.9E-06 35.7 2.3 42 323-373 1-49 (49)
186 KOG0297 TNF receptor-associate 92.9 0.054 1.2E-06 54.2 1.9 54 319-383 19-73 (391)
187 COG5175 MOT2 Transcriptional r 92.9 0.063 1.4E-06 50.6 2.1 55 320-384 13-71 (480)
188 KOG3039 Uncharacterized conser 92.7 0.11 2.3E-06 47.0 3.2 54 320-384 220-277 (303)
189 KOG1002 Nucleotide excision re 92.6 0.097 2.1E-06 52.4 3.1 58 314-377 529-586 (791)
190 KOG0827 Predicted E3 ubiquitin 92.6 0.071 1.5E-06 51.4 2.0 44 322-373 5-52 (465)
191 KOG4185 Predicted E3 ubiquitin 92.5 0.087 1.9E-06 50.9 2.7 45 322-376 4-54 (296)
192 KOG3800 Predicted E3 ubiquitin 91.7 0.12 2.6E-06 48.1 2.5 44 323-376 2-50 (300)
193 KOG2932 E3 ubiquitin ligase in 91.0 0.097 2.1E-06 48.9 1.1 45 322-379 91-136 (389)
194 PF11929 DUF3447: Domain of un 90.3 0.48 1E-05 35.4 4.1 47 48-104 8-54 (76)
195 PF11929 DUF3447: Domain of un 90.3 0.57 1.2E-05 35.0 4.6 48 12-68 7-54 (76)
196 PF14569 zf-UDP: Zinc-binding 89.7 0.2 4.3E-06 36.8 1.5 50 320-379 8-64 (80)
197 PF04710 Pellino: Pellino; In 89.6 0.1 2.2E-06 50.7 0.0 51 332-384 358-411 (416)
198 COG5220 TFB3 Cdk activating ki 89.4 0.15 3.2E-06 45.9 0.8 46 320-375 9-62 (314)
199 KOG1493 Anaphase-promoting com 89.1 0.14 3E-06 37.4 0.4 31 338-376 50-80 (84)
200 PF11789 zf-Nse: Zinc-finger o 88.2 0.66 1.4E-05 32.5 3.3 43 320-371 10-53 (57)
201 PLN02638 cellulose synthase A 88.1 0.56 1.2E-05 51.9 4.3 52 319-380 15-73 (1079)
202 PLN02436 cellulose synthase A 87.4 0.41 9E-06 52.8 2.8 52 319-380 34-92 (1094)
203 KOG1645 RING-finger-containing 86.7 0.46 9.9E-06 46.4 2.3 47 321-376 4-55 (463)
204 COG5194 APC11 Component of SCF 86.2 0.76 1.7E-05 34.0 2.7 44 322-376 32-80 (88)
205 PLN02189 cellulose synthase 85.8 0.63 1.4E-05 51.3 3.2 52 319-380 32-90 (1040)
206 KOG0826 Predicted E3 ubiquitin 85.3 1 2.2E-05 42.7 3.9 52 314-376 293-345 (357)
207 PLN02400 cellulose synthase 85.2 0.63 1.4E-05 51.5 2.8 52 319-380 34-92 (1085)
208 KOG1428 Inhibitor of type V ad 84.9 0.47 1E-05 53.2 1.7 61 317-380 3482-3547(3738)
209 KOG4367 Predicted Zn-finger pr 84.4 0.5 1.1E-05 46.3 1.4 32 320-351 3-34 (699)
210 KOG1941 Acetylcholine receptor 83.8 0.4 8.7E-06 46.4 0.5 50 322-380 366-419 (518)
211 KOG2660 Locus-specific chromos 83.1 0.33 7.1E-06 46.1 -0.3 57 320-387 14-72 (331)
212 PF05883 Baculo_RING: Baculovi 82.6 0.75 1.6E-05 38.0 1.6 32 321-352 26-66 (134)
213 PLN02915 cellulose synthase A 81.3 1.6 3.5E-05 48.3 4.0 51 320-380 14-71 (1044)
214 PHA03096 p28-like protein; Pro 81.2 0.69 1.5E-05 44.0 1.0 51 322-377 179-237 (284)
215 PF10367 Vps39_2: Vacuolar sor 80.7 0.74 1.6E-05 36.8 1.0 30 319-348 76-107 (109)
216 KOG3842 Adaptor protein Pellin 80.3 2.1 4.5E-05 40.4 3.8 50 333-384 372-424 (429)
217 KOG3970 Predicted E3 ubiquitin 79.6 1.9 4.2E-05 38.6 3.2 54 321-378 53-106 (299)
218 PF10272 Tmpp129: Putative tra 79.6 2.5 5.5E-05 41.4 4.3 56 320-375 270-349 (358)
219 KOG4218 Nuclear hormone recept 79.4 0.93 2E-05 43.2 1.3 52 320-375 14-76 (475)
220 KOG3161 Predicted E3 ubiquitin 78.9 0.71 1.5E-05 47.6 0.4 33 320-352 10-46 (861)
221 KOG3579 Predicted E3 ubiquitin 78.4 1.2 2.6E-05 41.4 1.6 57 320-376 267-327 (352)
222 KOG4445 Uncharacterized conser 78.2 0.22 4.8E-06 46.4 -3.2 55 323-377 117-186 (368)
223 KOG2817 Predicted E3 ubiquitin 77.7 1.5 3.3E-05 42.9 2.2 46 322-375 335-383 (394)
224 PLN02195 cellulose synthase A 77.6 2 4.2E-05 47.3 3.2 49 319-377 4-59 (977)
225 PHA02862 5L protein; Provision 76.9 2.2 4.7E-05 35.6 2.5 45 322-376 3-52 (156)
226 PHA02825 LAP/PHD finger-like p 76.2 3.3 7.1E-05 35.3 3.5 47 320-376 7-58 (162)
227 cd07920 Pumilio Pumilio-family 74.8 21 0.00044 34.6 9.4 270 5-294 15-299 (322)
228 PF03854 zf-P11: P-11 zinc fin 74.0 2.8 6.1E-05 27.8 2.0 41 323-376 4-45 (50)
229 KOG2231 Predicted E3 ubiquitin 73.7 2.5 5.3E-05 44.7 2.6 52 323-379 2-54 (669)
230 COG5222 Uncharacterized conser 71.7 2 4.3E-05 40.1 1.3 43 322-374 275-318 (427)
231 KOG2930 SCF ubiquitin ligase, 69.8 2.4 5.3E-05 33.0 1.2 33 332-375 74-106 (114)
232 KOG2113 Predicted RNA binding 68.6 4.5 9.8E-05 38.2 2.9 50 320-382 342-392 (394)
233 KOG2068 MOT2 transcription fac 66.9 4.1 8.8E-05 39.1 2.3 44 321-375 249-296 (327)
234 KOG1812 Predicted E3 ubiquitin 64.5 3.1 6.7E-05 41.6 1.1 45 321-370 146-194 (384)
235 KOG4362 Transcriptional regula 63.7 1.9 4.2E-05 45.5 -0.5 48 322-377 22-69 (684)
236 KOG1952 Transcription factor N 62.9 3.9 8.5E-05 43.9 1.5 53 321-377 191-247 (950)
237 cd07920 Pumilio Pumilio-family 60.3 69 0.0015 30.9 9.8 225 8-242 54-290 (322)
238 KOG4217 Nuclear receptors of t 57.3 2.4 5.3E-05 42.2 -1.0 58 321-385 269-343 (605)
239 KOG1940 Zn-finger protein [Gen 55.6 4.3 9.2E-05 38.3 0.3 47 324-382 161-211 (276)
240 PF02318 FYVE_2: FYVE-type zin 54.7 1.9 4.1E-05 35.3 -2.0 45 321-375 54-103 (118)
241 KOG3039 Uncharacterized conser 53.2 11 0.00024 34.4 2.5 39 317-355 39-77 (303)
242 PF02891 zf-MIZ: MIZ/SP-RING z 52.7 8.5 0.00018 26.1 1.3 46 323-375 4-50 (50)
243 KOG1815 Predicted E3 ubiquitin 52.6 16 0.00034 37.5 3.9 61 320-384 69-133 (444)
244 KOG3113 Uncharacterized conser 51.6 9.6 0.00021 35.0 1.8 65 315-392 105-173 (293)
245 PF09723 Zn-ribbon_8: Zinc rib 51.5 8.9 0.00019 24.9 1.2 17 364-380 24-41 (42)
246 PTZ00303 phosphatidylinositol 48.4 11 0.00023 40.3 1.9 59 322-380 461-533 (1374)
247 KOG3799 Rab3 effector RIM1 and 47.3 12 0.00025 30.8 1.5 54 320-377 64-118 (169)
248 COG4306 Uncharacterized protei 47.1 9 0.0002 31.0 0.9 28 342-383 29-56 (160)
249 KOG0298 DEAD box-containing he 46.6 4.7 0.0001 45.5 -1.1 47 319-376 1151-1198(1394)
250 KOG1729 FYVE finger containing 43.5 9.7 0.00021 36.3 0.6 59 316-378 163-226 (288)
251 KOG2113 Predicted RNA binding 42.6 6.9 0.00015 37.0 -0.5 55 320-384 135-190 (394)
252 PF12906 RINGv: RING-variant d 41.9 12 0.00026 24.9 0.8 40 324-372 1-47 (47)
253 KOG1818 Membrane trafficking a 41.4 20 0.00043 37.9 2.5 84 290-376 133-221 (634)
254 COG5183 SSM4 Protein involved 41.3 26 0.00056 37.8 3.3 51 319-378 10-67 (1175)
255 PF01363 FYVE: FYVE zinc finge 40.8 12 0.00025 27.1 0.6 31 319-349 7-41 (69)
256 KOG3268 Predicted E3 ubiquitin 40.6 20 0.00043 31.0 2.0 59 320-378 164-229 (234)
257 PF04053 Coatomer_WDAD: Coatom 40.3 45 0.00099 34.1 4.9 18 15-32 268-285 (443)
258 KOG2114 Vacuolar assembly/sort 39.5 1.8E+02 0.0039 32.0 9.1 48 322-383 841-889 (933)
259 PF09237 GAGA: GAGA factor; I 38.6 14 0.0003 25.1 0.6 17 362-378 20-36 (54)
260 PF09297 zf-NADH-PPase: NADH p 38.3 9.5 0.00021 23.0 -0.2 28 341-375 3-30 (32)
261 smart00064 FYVE Protein presen 37.6 25 0.00055 25.2 2.0 30 321-350 10-43 (68)
262 PF10083 DUF2321: Uncharacteri 37.1 13 0.00027 31.7 0.3 28 341-382 28-55 (158)
263 PHA02610 uvsY.-2 hypothetical 37.1 17 0.00037 24.6 0.8 20 367-386 2-21 (53)
264 PF13240 zinc_ribbon_2: zinc-r 36.5 16 0.00034 20.3 0.5 13 364-376 11-23 (23)
265 COG5109 Uncharacterized conser 35.8 21 0.00046 33.9 1.6 46 322-375 337-385 (396)
266 KOG0513 Ca2+-independent phosp 34.8 3.4 7.3E-05 42.7 -4.2 47 116-174 136-182 (503)
267 PF04216 FdhE: Protein involve 34.1 9.6 0.00021 36.6 -1.0 51 321-382 172-227 (290)
268 PF00643 zf-B_box: B-box zinc 34.0 32 0.00069 21.9 1.8 31 321-351 3-33 (42)
269 PF04710 Pellino: Pellino; In 33.8 14 0.0003 36.5 0.0 45 333-386 303-347 (416)
270 PRK03564 formate dehydrogenase 33.4 19 0.0004 34.8 0.8 45 320-375 186-235 (309)
271 PF14169 YdjO: Cold-inducible 33.1 31 0.00068 24.3 1.7 18 363-380 36-53 (59)
272 PF04423 Rad50_zn_hook: Rad50 32.8 16 0.00035 25.1 0.2 11 368-378 22-32 (54)
273 KOG4591 Uncharacterized conser 32.5 32 0.0007 30.6 2.1 45 199-243 223-272 (280)
274 TIGR01562 FdhE formate dehydro 32.2 16 0.00034 35.3 0.1 52 321-384 184-241 (305)
275 KOG3842 Adaptor protein Pellin 31.5 23 0.0005 33.6 1.1 37 333-377 316-352 (429)
276 KOG2066 Vacuolar assembly/sort 31.5 1E+02 0.0022 33.5 5.8 29 322-350 785-820 (846)
277 KOG0825 PHD Zn-finger protein 31.4 28 0.00061 37.4 1.8 63 315-382 93-159 (1134)
278 KOG1709 Guanidinoacetate methy 31.4 34 0.00074 31.1 2.1 38 218-255 2-39 (271)
279 COG1996 RPC10 DNA-directed RNA 30.4 13 0.00029 25.0 -0.5 15 362-376 20-34 (49)
280 cd07168 NR_DBD_DHR4_like DNA-b 29.8 84 0.0018 24.2 3.8 29 320-351 5-33 (90)
281 KOG1819 FYVE finger-containing 28.7 26 0.00056 35.4 0.9 33 318-350 898-934 (990)
282 PF10571 UPF0547: Uncharacteri 28.5 29 0.00063 20.0 0.7 10 368-377 2-11 (26)
283 PF04053 Coatomer_WDAD: Coatom 28.2 1.5E+02 0.0032 30.4 6.4 108 12-140 322-430 (443)
284 cd00065 FYVE FYVE domain; Zinc 27.6 40 0.00086 23.1 1.5 29 322-350 3-35 (57)
285 PF10497 zf-4CXXC_R1: Zinc-fin 27.1 48 0.001 26.4 2.1 33 340-374 37-69 (105)
286 KOG3614 Ca2+/Mg2+-permeable ca 27.1 4E+02 0.0087 31.1 9.7 55 50-108 397-451 (1381)
287 PRK14714 DNA polymerase II lar 26.4 43 0.00092 38.4 2.2 57 322-386 668-729 (1337)
288 PF09538 FYDLN_acid: Protein o 26.2 28 0.0006 28.0 0.5 29 343-379 11-39 (108)
289 PF15616 TerY-C: TerY-C metal 26.2 49 0.0011 27.5 2.0 39 322-377 78-116 (131)
290 smart00734 ZnF_Rad18 Rad18-lik 26.2 31 0.00066 19.8 0.6 10 367-376 2-11 (26)
291 PRK11032 hypothetical protein; 25.7 50 0.0011 28.5 2.1 30 331-375 122-151 (160)
292 TIGR00595 priA primosomal prot 25.4 26 0.00055 36.6 0.3 12 364-375 251-262 (505)
293 PF10146 zf-C4H2: Zinc finger- 25.4 41 0.0009 31.0 1.6 21 344-375 197-217 (230)
294 PF07191 zinc-ribbons_6: zinc- 25.0 8 0.00017 28.2 -2.4 42 323-380 3-44 (70)
295 PF02148 zf-UBP: Zn-finger in 24.9 39 0.00083 24.0 1.1 28 324-351 1-33 (63)
296 PF01096 TFIIS_C: Transcriptio 24.8 58 0.0013 20.7 1.8 22 368-389 2-23 (39)
297 KOG3053 Uncharacterized conser 24.3 46 0.001 30.8 1.7 56 318-376 17-81 (293)
298 KOG1815 Predicted E3 ubiquitin 24.3 26 0.00056 36.0 0.1 42 338-379 183-239 (444)
299 cd00730 rubredoxin Rubredoxin; 24.1 35 0.00076 23.2 0.6 18 364-381 32-49 (50)
300 KOG4216 Steroid hormone nuclea 24.1 31 0.00066 34.0 0.5 55 320-375 45-107 (479)
301 smart00440 ZnF_C2C2 C2C2 Zinc 23.6 68 0.0015 20.5 1.9 22 368-389 2-23 (40)
302 PF07295 DUF1451: Protein of u 23.3 62 0.0013 27.5 2.2 29 332-375 111-139 (146)
303 smart00834 CxxC_CXXC_SSSS Puta 23.1 49 0.0011 20.8 1.2 17 364-380 24-40 (41)
304 cd00350 rubredoxin_like Rubred 22.3 62 0.0014 19.6 1.5 17 365-381 16-32 (33)
305 COG4357 Zinc finger domain con 22.2 21 0.00047 27.5 -0.7 10 367-376 81-90 (105)
306 PF10886 DUF2685: Protein of u 22.1 49 0.0011 22.8 1.0 20 367-386 2-21 (54)
307 PF10217 DUF2039: Uncharacteri 22.0 40 0.00087 26.1 0.7 35 322-375 56-90 (92)
308 KOG4215 Hepatocyte nuclear fac 21.8 38 0.00082 33.1 0.6 55 320-375 18-80 (432)
309 KOG4591 Uncharacterized conser 21.7 71 0.0015 28.5 2.3 52 113-172 219-271 (280)
310 PF10764 Gin: Inhibitor of sig 21.6 98 0.0021 20.6 2.4 32 323-355 1-32 (46)
311 KOG2906 RNA polymerase III sub 21.2 89 0.0019 24.4 2.4 26 365-390 64-89 (105)
312 smart00659 RPOLCX RNA polymera 21.2 20 0.00044 23.6 -0.9 15 363-377 16-30 (44)
313 PF07975 C1_4: TFIIH C1-like d 21.1 84 0.0018 21.4 2.0 28 335-373 23-50 (51)
314 cd00729 rubredoxin_SM Rubredox 20.7 68 0.0015 19.7 1.4 15 366-380 18-32 (34)
315 TIGR02652 conserved hypothetic 20.6 37 0.0008 28.3 0.3 17 366-382 9-25 (163)
316 COG0068 HypF Hydrogenase matur 20.4 83 0.0018 33.8 2.8 28 344-376 154-183 (750)
317 KOG4185 Predicted E3 ubiquitin 20.4 32 0.0007 33.0 -0.1 45 321-375 207-265 (296)
318 KOG2789 Putative Zn-finger pro 20.3 71 0.0015 31.6 2.1 65 321-385 74-153 (482)
319 smart00290 ZnF_UBP Ubiquitin C 20.1 76 0.0017 21.0 1.7 23 324-346 2-24 (50)
320 PF05605 zf-Di19: Drought indu 20.0 59 0.0013 22.2 1.2 12 366-377 31-42 (54)
No 1
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=3e-38 Score=299.68 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=175.2
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
.+..|.||||+|+..|+.++++.|++.|++++.. ++.||||+|+..|+.+++++|++. |++++.+|..|+|||
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~---Gadvn~~d~~G~TpL 98 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS---GMDDSQFDDKGNTAL 98 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHH
Confidence 3567888899998888888888888888876432 457889998888888888888888 888888888888999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-CCCCCH
Q 012618 87 MVAAMNGKLSCVKKLIESGAFILNFDSLQG-RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATP 164 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~~g~t~ 164 (460)
|+|+..|+.+++++|++.|+++ +..+..| .||||+|+..|+.+++++|++.++.. .| ..|.||
T Consensus 99 h~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--------------~d~~~g~Tp 163 (284)
T PHA02791 99 YYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------FDLAILLSC 163 (284)
T ss_pred HHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--------------cccccCccH
Confidence 9998888888999888888887 5555666 48888888888888888888875431 12 247889
Q ss_pred HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH-HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP-LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~ 243 (460)
||+|+..|+.+++++||++|+ +++.+|..|.|| ||+|+..|+.++|++|+++|++++.+|..| ++| ++
T Consensus 164 Lh~Aa~~g~~eiv~lLL~~gA----d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~ 232 (284)
T PHA02791 164 IHITIKNGHVDMMILLLDYMT----STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DD 232 (284)
T ss_pred HHHHHHcCCHHHHHHHHHCCC----CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CC
Confidence 999999888899999988888 445556677766 888888888999999988898888888854 555 77
Q ss_pred HHHHHhhCCCCCC
Q 012618 244 QACAALLNPSSAE 256 (460)
Q Consensus 244 ~~i~~~Ll~~ga~ 256 (460)
.|++++|+++.++
T Consensus 233 ~e~~~~ll~~~~~ 245 (284)
T PHA02791 233 AEIAKMIIEKHVE 245 (284)
T ss_pred HHHHHHHHHhhhh
Confidence 7888888887764
No 2
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=325.30 Aligned_cols=259 Identities=25% Similarity=0.360 Sum_probs=239.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHH-----HHHcCcHHHHHHHHhccCCCCCCccCCCCC
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHL-----AAAYGQIEVLSMLLDQFFLYTNTDALNRYK 82 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g 82 (460)
+..+.||||.|+..|+.++|++|+++|++++.. +..+.||||+ |+..++.+++++|++. |++++..+..|
T Consensus 32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~--~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~---ga~i~~~d~~g 106 (480)
T PHA03100 32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSS--TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY---GANVNAPDNNG 106 (480)
T ss_pred hcccchhhhhhhccCCHHHHHHHHHcCCCCCCc--cccCcCHHHHHHHHHHHhhchHHHHHHHHHC---CCCCCCCCCCC
Confidence 457899999999999999999999999998544 4578899999 9999999999999999 99999999999
Q ss_pred CcHHHHHH--HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC--CHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618 83 QTPLMVAA--MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG--HSDCLQALLTAARTSPVANTWGFSRFVNIRD 158 (460)
Q Consensus 83 ~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d 158 (460)
.||||+|+ ..|+.+++++|++.|+++ +..+..|.||||+|+..| +.+++++|++.|++ ++.++
T Consensus 107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d------------in~~d 173 (480)
T PHA03100 107 ITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD------------INAKN 173 (480)
T ss_pred CchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC------------ccccc
Confidence 99999999 999999999999999988 777889999999999999 99999999999998 88899
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCC------ChHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCC
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG------STPLHFAARGGS--LECIRELLAWGADRVQPDAF 230 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g------~TpLh~A~~~g~--~~~v~~Ll~~gad~~~~d~~ 230 (460)
..|.||||+|+..|+.+++++|+++|+ +.+..+..| .||||+|+..++ .+++++|+++|++++.+|..
T Consensus 174 ~~g~tpL~~A~~~~~~~iv~~Ll~~ga----~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~ 249 (480)
T PHA03100 174 RYGYTPLHIAVEKGNIDVIKFLLDNGA----DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY 249 (480)
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHHcCC----CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC
Confidence 999999999999999999999999999 445556667 899999999999 99999999999999999999
Q ss_pred CCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618 231 GRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI 298 (460)
Q Consensus 231 G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~ 298 (460)
|.||||+|+..++.+++++|+++|+++.. .+..|.++|+.|+...+.+.++.+++...
T Consensus 250 g~TpL~~A~~~~~~~iv~~Ll~~gad~n~----------~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 250 GFTPLHYAVYNNNPEFVKYLLDLGANPNL----------VNKYGDTPLHIAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCc----------cCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence 99999999999999999999999996654 45578899999999999999999987543
No 3
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=8.2e-38 Score=316.96 Aligned_cols=228 Identities=22% Similarity=0.241 Sum_probs=213.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA 90 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~ 90 (460)
.+++|+.|+..|+.++|++|+++|++++.. +.+|.||||+|+..|+.+++++|++. |++++..+..+.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLDIGINPNFE--IYDGISPIKLAMKFRDSEAIKLLMKH---GAIPDVKYPDIESELHDAV 76 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHHCCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhC---CCCccccCCCcccHHHHHH
Confidence 468999999999999999999999998653 45799999999999999999999999 9999998899999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH
Q 012618 91 MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170 (460)
Q Consensus 91 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~ 170 (460)
..|+.+++++|++.|+......+..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+.
T Consensus 77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad------------~~~~~~~g~tpLh~A~~ 144 (413)
T PHA02875 77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD------------PDIPNTDKFSPLHLAVM 144 (413)
T ss_pred HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC------------CCCCCCCCCCHHHHHHH
Confidence 999999999999999987677777899999999999999999999999998 78899999999999999
Q ss_pred cCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHhChHHHHHh
Q 012618 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR-IPYAIALKYKHQACAAL 249 (460)
Q Consensus 171 ~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~-tpL~~A~~~~~~~i~~~ 249 (460)
.|+.+++++|+++|+ ..+.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..++.+++++
T Consensus 145 ~~~~~~v~~Ll~~g~----~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~ 220 (413)
T PHA02875 145 MGDIKGIELLIDHKA----CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220 (413)
T ss_pred cCCHHHHHHHHhcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence 999999999999999 5567788999999999999999999999999999999998874 88999999999999999
Q ss_pred hCCCCCCCCc
Q 012618 250 LNPSSAEPLV 259 (460)
Q Consensus 250 Ll~~ga~~~~ 259 (460)
|+++|++++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 9999998875
No 4
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-39 Score=267.86 Aligned_cols=210 Identities=33% Similarity=0.439 Sum_probs=195.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA 90 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~ 90 (460)
+-++.+.++......-|+.+++..++.....++.+|+||||+|+..|+.+++.+|+.. .+..+|.+|..|+||||.|+
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq--~nv~~ddkDdaGWtPlhia~ 80 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ--PNVKPDDKDDAGWTPLHIAA 80 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc--CCCCCCCccccCCchhhhhh
Confidence 4567888888899999999999999666666778999999999999999999999964 38899999999999999999
Q ss_pred HcCCHHHHHHHHHc-CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 91 MNGKLSCVKKLIES-GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 91 ~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
..|+.++|+.|+.+ |+++ +..+..|+||||||+..|+.+|+++|++.|+. ++.+|..|.||||.|+
T Consensus 81 s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~------------i~~kD~~~qtplHRAA 147 (226)
T KOG4412|consen 81 SNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL------------IRIKDKQGQTPLHRAA 147 (226)
T ss_pred hcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC------------CcccccccCchhHHHH
Confidence 99999999999999 8888 77888999999999999999999999999988 8999999999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~ 240 (460)
..|..+++++|+..|+ .++.+|..|+||||.|...|+.++..+|+++|||+...|+.| ||+..|..
T Consensus 148 avGklkvie~Li~~~a----~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 148 AVGKLKVIEYLISQGA----PLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN 213 (226)
T ss_pred hccchhhHHHHHhcCC----CCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence 9999999999999999 778899999999999999999999999999999999999999 99887753
No 5
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=320.97 Aligned_cols=264 Identities=21% Similarity=0.256 Sum_probs=238.0
Q ss_pred CCcccc-CCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC-cHHHHHHHHhccCCCCCCc
Q 012618 2 GQRMSC-RERSESALFVAVENG---DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG-QIEVLSMLLDQFFLYTNTD 76 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g---~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~ 76 (460)
|.+++. +..|.||||+|+..| +.++++.|+++|++++.. +..|.||||+|+..| +.+++++|++. |++++
T Consensus 37 ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~--~~~g~TpLh~A~~~~~~~~iv~lLl~~---ga~in 111 (471)
T PHA03095 37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFTPLHLYLYNATTLDVIKLLIKA---GADVN 111 (471)
T ss_pred CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCcHHHHHHHHHc---CCCCC
Confidence 556665 457899999999999 999999999999999665 348999999999999 59999999999 99999
Q ss_pred cCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC--CHHHHHHHHHhcCCCCCcccCCCcc
Q 012618 77 ALNRYKQTPLMVAA--MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG--HSDCLQALLTAARTSPVANTWGFSR 152 (460)
Q Consensus 77 ~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~ 152 (460)
..+..|.||||+|+ ..++.+++++|++.|+++ +..+..|.||||+|+..+ +.+++++|++.|++
T Consensus 112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~----------- 179 (471)
T PHA03095 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD----------- 179 (471)
T ss_pred CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-----------
Confidence 99999999999999 556899999999999998 777889999999999876 68999999999988
Q ss_pred ccccCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCH--HHHHHHHHcCCCCCCCC
Q 012618 153 FVNIRDESGATPLHLAARQ--GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL--ECIRELLAWGADRVQPD 228 (460)
Q Consensus 153 ~v~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~--~~v~~Ll~~gad~~~~d 228 (460)
++..|..|.||||+|+.. +..+++++|+++|+ +++.+|..|.||||+|+..++. .+++.|++.|+++|.+|
T Consensus 180 -~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~----~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d 254 (471)
T PHA03095 180 -VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGC----DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN 254 (471)
T ss_pred -CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCC----CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC
Confidence 677799999999999975 78899999999999 6677889999999999999875 68899999999999999
Q ss_pred CCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618 229 AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET 297 (460)
Q Consensus 229 ~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~ 297 (460)
..|+||||+|+..|+.+++++|+++||+++. .+..|+++|+.|+..++.+.++.++...
T Consensus 255 ~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~----------~~~~g~tpl~~A~~~~~~~~v~~LL~~~ 313 (471)
T PHA03095 255 RYGQTPLHYAAVFNNPRACRRLIALGADINA----------VSSDGNTPLSLMVRNNNGRAVRAALAKN 313 (471)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence 9999999999999999999999999997764 4557889999999999999999998654
No 6
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=315.51 Aligned_cols=258 Identities=22% Similarity=0.285 Sum_probs=224.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccC-----------------
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF----------------- 70 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~----------------- 70 (460)
++.|.||||.|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.+++++|+++..
T Consensus 32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~--~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ 109 (434)
T PHA02874 32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHI--NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT 109 (434)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence 457899999999999999999999999998654 4578899999999999999999998621
Q ss_pred ---CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCccc
Q 012618 71 ---LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANT 147 (460)
Q Consensus 71 ---~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~ 147 (460)
.|++++.++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++
T Consensus 110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~------ 182 (434)
T PHA02874 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY------ 182 (434)
T ss_pred HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC------
Confidence 13567778899999999999999999999999999998 77888999999999999999999999999987
Q ss_pred CCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 012618 148 WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227 (460)
Q Consensus 148 ~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 227 (460)
++..+..|.||||+|+..|+.+++++|+++|+ ..+..+..|.||||+|+..+. +.+++|+ .|++++.+
T Consensus 183 ------~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~----~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~ 250 (434)
T PHA02874 183 ------ANVKDNNGESPLHNAAEYGDYACIKLLIDHGN----HIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQ 250 (434)
T ss_pred ------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCc
Confidence 78899999999999999999999999999999 455667789999999999765 5666666 69999999
Q ss_pred CCCCCCHHHHHHHhC-hHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh-hHHHHHHhhhc
Q 012618 228 DAFGRIPYAIALKYK-HQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES-NEEREKAILNE 296 (460)
Q Consensus 228 d~~G~tpL~~A~~~~-~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~-~~~~~~~ll~~ 296 (460)
|..|+||||+|+..+ +.+++++|+.+|+++.. .+..|+++|+.|.... .....+.++..
T Consensus 251 d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~----------~d~~g~TpL~~A~~~~~~~~~ik~ll~~ 311 (434)
T PHA02874 251 DIDGSTPLHHAINPPCDIDIIDILLYHKADISI----------KDNKGENPIDTAFKYINKDPVIKDIIAN 311 (434)
T ss_pred CCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCC----------CCCCCCCHHHHHHHhCCccHHHHHHHHh
Confidence 999999999999876 78999999999996654 4567889999998765 44455555543
No 7
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=292.54 Aligned_cols=213 Identities=18% Similarity=0.116 Sum_probs=194.1
Q ss_pred cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 012618 21 NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKK 100 (460)
Q Consensus 21 ~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 100 (460)
.++.+++++|++++++. .+.+|.||||+|+..|+.+++++|++. +++++..+ |.||||+|+..|+.+++++
T Consensus 9 ~~~~~~~~~Lis~~a~~----~D~~G~TpLh~Aa~~g~~eiv~~Ll~~---ga~~n~~d--~~TpLh~Aa~~g~~eiV~l 79 (284)
T PHA02791 9 WKSKQLKSFLSSKDAFK----ADVHGHSALYYAIADNNVRLVCTLLNA---GALKNLLE--NEFPLHQAATLEDTKIVKI 79 (284)
T ss_pred cCHHHHHHHHHhCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHHC---cCCCcCCC--CCCHHHHHHHCCCHHHHHH
Confidence 57899999999998853 356899999999999999999999999 88888764 7899999999999999999
Q ss_pred HHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-CHHHHHHHcCCHHHHHH
Q 012618 101 LIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA-TPLHLAARQGWSECVHT 179 (460)
Q Consensus 101 Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~-t~L~~A~~~g~~~~v~~ 179 (460)
|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++ ++.++..|. ||||+|+..|+.++|++
T Consensus 80 LL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad------------in~~~~~g~~TpL~~Aa~~g~~eivk~ 146 (284)
T PHA02791 80 LLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR------------LMFYGKTGWKTSFYHAVMLNDVSIVSY 146 (284)
T ss_pred HHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------cCccCCCCCcHHHHHHHHcCCHHHHHH
Confidence 99999988 77888999999999999999999999999988 788888885 89999999999999999
Q ss_pred HHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhChHHHHHhhCCCCCCC
Q 012618 180 LLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP-YAIALKYKHQACAALLNPSSAEP 257 (460)
Q Consensus 180 Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp-L~~A~~~~~~~i~~~Ll~~ga~~ 257 (460)
|++++... .| ..|.||||+|++.|+.+++++|+++|++++..|..|.|| ||+|+..++.+++++|+++|+++
T Consensus 147 LL~~~~~~------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i 220 (284)
T PHA02791 147 FLSEIPST------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI 220 (284)
T ss_pred HHhcCCcc------cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 99997632 12 248999999999999999999999999999999999987 99999999999999999999988
Q ss_pred Cccc
Q 012618 258 LVWP 261 (460)
Q Consensus 258 ~~~~ 261 (460)
+...
T Consensus 221 n~~~ 224 (284)
T PHA02791 221 YSVN 224 (284)
T ss_pred ccCc
Confidence 6543
No 8
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=5.8e-37 Score=310.98 Aligned_cols=264 Identities=18% Similarity=0.192 Sum_probs=173.7
Q ss_pred CcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 12 ESALFVAVE--NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 12 ~t~L~~Aa~--~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
.++||.++. .++.++|+.|+++|++++.. +.+|.||||+|+..|+.++|++||++ |+++|.+|..|.||||+|
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~G~TpLh~Aa~~g~~eiv~lLL~~---GAdin~~d~~g~TpLh~A 112 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNET--DDDGNYPLHIASKINNNRIVAMLLTH---GADPNACDKQHKTPLYYL 112 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCCCCCCCCHHHHH
Confidence 567776553 34667777777777776443 45677777777777777777777777 777777777777777777
Q ss_pred HHcC--CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618 90 AMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167 (460)
Q Consensus 90 ~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~ 167 (460)
+..+ ..+++++|+++|+++....+..|.|||| |+..++.+++++|++.+++ ++.+|..|.||||+
T Consensus 113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad------------~~~~d~~G~t~Lh~ 179 (446)
T PHA02946 113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE------------ARIVDKFGKNHIHR 179 (446)
T ss_pred HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc------------ccccCCCCCCHHHH
Confidence 6654 3677777777777774455667777775 5556777777777777766 67777777777777
Q ss_pred HHHcCC--HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618 168 AARQGW--SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG--SLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243 (460)
Q Consensus 168 A~~~g~--~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~ 243 (460)
|+..++ .+++++|+++|+ +++.+|..|.||||+|+..+ +.+++++|+. |++++.+|..|.||||+|+..++
T Consensus 180 A~~~~~~~~~~v~~Ll~~Ga----din~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~ 254 (446)
T PHA02946 180 HLMSDNPKASTISWMMKLGI----SPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLS 254 (446)
T ss_pred HHHhcCCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCC
Confidence 766443 567777777777 44555667777777777664 6677777764 67777777777777777777766
Q ss_pred -HHHHHhhCCCCCCCCccccccc----------ccCCC-CHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618 244 -QACAALLNPSSAEPLVWPLQLR----------NMTDL-NPEAKELLEKALMESNEEREKAILNETI 298 (460)
Q Consensus 244 -~~i~~~Ll~~ga~~~~~~~~~~----------~~~~~-~~~~~~~L~~a~~~~~~~~~~~ll~~~~ 298 (460)
.+++++|+.+|+.......... .+... ...++|+|+.|+..++.+.++.+++...
T Consensus 255 ~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~ 321 (446)
T PHA02946 255 PAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI 321 (446)
T ss_pred hHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 3677777777654332211000 01111 1234566777777766666666665544
No 9
>PHA02946 ankyin-like protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=308.66 Aligned_cols=266 Identities=14% Similarity=0.189 Sum_probs=225.3
Q ss_pred CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC--cHHHHHHHHhccCCCCCCcc-
Q 012618 2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG--QIEVLSMLLDQFFLYTNTDA- 77 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~- 77 (460)
|.+++. +..|.||||+|+..|+.++|++||++|++++. .+..|.||||+|+..+ ..+++++|+++ |++++.
T Consensus 62 Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~--~d~~g~TpLh~A~~~~~~~~e~v~lLl~~---Gadin~~ 136 (446)
T PHA02946 62 GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA--CDKQHKTPLYYLSGTDDEVIERINLLVQY---GAKINNS 136 (446)
T ss_pred cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC--CCCCCCCHHHHHHHcCCchHHHHHHHHHc---CCCcccc
Confidence 555664 56899999999999999999999999999864 3568999999999876 48999999999 999995
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC--HHHHHHHHHhcCCCCCcccCCCccccc
Q 012618 78 LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH--SDCLQALLTAARTSPVANTWGFSRFVN 155 (460)
Q Consensus 78 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~~~~~v~ 155 (460)
.+..|.|||| |+..++.+++++|++.|+++ +..|..|+||||+|+..++ .+++++|++.|++ ++
T Consensus 137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad------------in 202 (446)
T PHA02946 137 VDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS------------PS 202 (446)
T ss_pred cCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC------------Cc
Confidence 6889999997 67789999999999999988 7888999999999987554 6899999999998 89
Q ss_pred cCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCCCCC
Q 012618 156 IRDESGATPLHLAARQG--WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGS-LECIRELLAWGADRVQPDAFGR 232 (460)
Q Consensus 156 ~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~gad~~~~d~~G~ 232 (460)
.+|..|.||||+|+..+ +.+++++|++ |+ +++.+|..|.||||+|+..++ .+++++|+++|++++ ++
T Consensus 203 ~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga----din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~ 272 (446)
T PHA02946 203 KPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST----DVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQ 272 (446)
T ss_pred ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC----CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-----Cc
Confidence 99999999999999986 7899999995 77 667788899999999999988 589999999997764 33
Q ss_pred CHHHHHHHhChHHHHHhhCCCCCCCCcccccc----------cccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618 233 IPYAIALKYKHQACAALLNPSSAEPLVWPLQL----------RNMTDLNPEAKELLEKALMESNEEREKAILNET 297 (460)
Q Consensus 233 tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~----------~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~ 297 (460)
++++|+..+..+++++|..+|......+... +.+...+..++++|+.|+..++.+.++.++...
T Consensus 273 -~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 346 (446)
T PHA02946 273 -TVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLLFNH 346 (446)
T ss_pred -HHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHHHCC
Confidence 3899999999999999999886433222111 122334567899999999999999999988544
No 10
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=2.2e-36 Score=316.26 Aligned_cols=263 Identities=18% Similarity=0.182 Sum_probs=222.0
Q ss_pred Ccccc--CCCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCc--HHHHHHHHhccCCCCCCc
Q 012618 3 QRMSC--RERSESALFVAVE--NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQ--IEVLSMLLDQFFLYTNTD 76 (460)
Q Consensus 3 ~~~~~--~~~g~t~L~~Aa~--~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~~~~ 76 (460)
.+++. ++.|.||||.|+. .++.++|++|+++|++++.. +..|.||||+|+..|+ .++|++||+. |+++|
T Consensus 167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k--D~~G~TPLH~Aa~~g~~~~eIVklLLe~---GADVN 241 (764)
T PHA02716 167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ--NNHLITPLHTYLITGNVCASVIKKIIEL---GGDMD 241 (764)
T ss_pred CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHc---CCCCC
Confidence 44553 6689999999875 46899999999999998654 5689999999999995 5999999999 99999
Q ss_pred cCCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHHcCCccccCCCCCCChH
Q 012618 77 ALNRYKQTPLMVA-------------------------------------AMNGKLSCVKKLIESGAFILNFDSLQGRTC 119 (460)
Q Consensus 77 ~~~~~g~tpL~~A-------------------------------------~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~ 119 (460)
.+|..|+||||+| +..|+.+++++|++.|+++ +.+|..|+||
T Consensus 242 ~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TP 320 (764)
T PHA02716 242 MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTC 320 (764)
T ss_pred CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCH
Confidence 9999999999975 3457889999999999997 7788999999
Q ss_pred HHHHHH--cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH--------------cCCHHHHHHHHHc
Q 012618 120 LHYAAY--YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR--------------QGWSECVHTLLDN 183 (460)
Q Consensus 120 L~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~--------------~g~~~~v~~Ll~~ 183 (460)
||+|+. .++.+++++|++.|++ ++.+|..|.||||+|+. .++.+++++|+++
T Consensus 321 LH~Aaa~~~~~~eIVklLLe~GAD------------IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~ 388 (764)
T PHA02716 321 LHQYILRHNISTDIIKLLHEYGND------------LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL 388 (764)
T ss_pred HHHHHHHhCCCchHHHHHHHcCCC------------CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC
Confidence 999864 4688999999999998 89999999999999875 3689999999999
Q ss_pred CCccccCCCCCCCCCChHHHH----HHhcCCHHHHHHHHHcCC-------------------------------------
Q 012618 184 GALACSSTGGNGYPGSTPLHF----AARGGSLECIRELLAWGA------------------------------------- 222 (460)
Q Consensus 184 ga~~~~~~~~~d~~g~TpLh~----A~~~g~~~~v~~Ll~~ga------------------------------------- 222 (460)
|+ +++.+|..|.||||. |...++.+++++|++.|+
T Consensus 389 GA----DIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~ 464 (764)
T PHA02716 389 GA----DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLY 464 (764)
T ss_pred CC----CCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhh
Confidence 99 566778899999994 233567899998887643
Q ss_pred ------------------------CCCCCCCCCCCHHHHHHHhChHH-----HHHhhCCCCCCCCcccccccccCCCCHH
Q 012618 223 ------------------------DRVQPDAFGRIPYAIALKYKHQA-----CAALLNPSSAEPLVWPLQLRNMTDLNPE 273 (460)
Q Consensus 223 ------------------------d~~~~d~~G~tpL~~A~~~~~~~-----i~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 273 (460)
+++..|..|+||||+|+..++.+ ++++|++.|++++. .+..
T Consensus 465 ~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~----------~d~~ 534 (764)
T PHA02716 465 TDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI----------PTKN 534 (764)
T ss_pred hhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc----------cCCC
Confidence 23445778999999999998774 55999999996553 6778
Q ss_pred HHHHHHHHHhhhhH-----HHHHHhhhcc
Q 012618 274 AKELLEKALMESNE-----EREKAILNET 297 (460)
Q Consensus 274 ~~~~L~~a~~~~~~-----~~~~~ll~~~ 297 (460)
|+|+|+.|+.++.. +.++.+++..
T Consensus 535 G~TPLh~A~~~g~~~~~~~eIvk~LL~~g 563 (764)
T PHA02716 535 GVTPLMLTMRNNRLSGHQWYIVKNILDKR 563 (764)
T ss_pred CCCHHHHHHHcCCccccHHHHHHHHHhcC
Confidence 99999999998854 8889888743
No 11
>PHA03100 ankyrin repeat protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=312.36 Aligned_cols=236 Identities=25% Similarity=0.285 Sum_probs=218.8
Q ss_pred CCcccc-CCCCCcHHHH-----HHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHH--HcCcHHHHHHHHhccCCCC
Q 012618 2 GQRMSC-RERSESALFV-----AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAA--AYGQIEVLSMLLDQFFLYT 73 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~-----Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~ 73 (460)
|.++.. +..+.||||+ |+..|+.++++.|+++|++++. .+..|.||||+|+ ..|+.+++++|++. |+
T Consensus 58 g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~--~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~---g~ 132 (480)
T PHA03100 58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA--PDNNGITPLLYAISKKSNSYSIVEYLLDN---GA 132 (480)
T ss_pred CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCC--CCCCCCchhhHHHhcccChHHHHHHHHHc---CC
Confidence 445544 4568899999 9999999999999999999843 3568899999999 99999999999999 99
Q ss_pred CCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCc
Q 012618 74 NTDALNRYKQTPLMVAAMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS 151 (460)
Q Consensus 74 ~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 151 (460)
+++..+..|.||||+|+..+ +.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|++
T Consensus 133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---------- 201 (480)
T PHA03100 133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD---------- 201 (480)
T ss_pred CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC----------
Confidence 99999999999999999999 999999999999998 66777999999999999999999999999998
Q ss_pred cccccCCCCC------CCHHHHHHHcCC--HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618 152 RFVNIRDESG------ATPLHLAARQGW--SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223 (460)
Q Consensus 152 ~~v~~~d~~g------~t~L~~A~~~g~--~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 223 (460)
++..+..| .||||+|+..++ .+++++|+++|+ +.+.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 202 --~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~----din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad 275 (480)
T PHA03100 202 --INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV----PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN 275 (480)
T ss_pred --ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 77788888 899999999999 999999999999 5566788999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCc
Q 012618 224 RVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLV 259 (460)
Q Consensus 224 ~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~ 259 (460)
++.+|..|.|||++|+..++.+++++|+++|++...
T Consensus 276 ~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 276 PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 311 (480)
T ss_pred CCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence 999999999999999999999999999999997654
No 12
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=301.64 Aligned_cols=252 Identities=23% Similarity=0.370 Sum_probs=221.8
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN 92 (460)
Q Consensus 13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~ 92 (460)
..|..|+..|+++.|+.|++.++...... +.+|.||||.|+..|+.++|++|++. |++++..+..|.||||+|+..
T Consensus 3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~-~~~~~tpL~~A~~~g~~~iv~~Ll~~---Ga~~n~~~~~~~t~L~~A~~~ 78 (434)
T PHA02874 3 QDLRMCIYSGDIEAIEKIIKNKGNCINIS-VDETTTPLIDAIRSGDAKIVELFIKH---GADINHINTKIPHPLLTAIKI 78 (434)
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHc
Confidence 46899999999999999998776643333 35788999999999999999999999 999999999999999999999
Q ss_pred CCHHHHHHHHHcCCcc----------------------ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCC
Q 012618 93 GKLSCVKKLIESGAFI----------------------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGF 150 (460)
Q Consensus 93 g~~~~v~~Ll~~g~~~----------------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 150 (460)
|+.+++++|+++|+++ .+..+..|.||||+|+..|+.+++++|++.|++
T Consensus 79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad--------- 149 (434)
T PHA02874 79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD--------- 149 (434)
T ss_pred CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC---------
Confidence 9999999999988653 245677899999999999999999999999988
Q ss_pred ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 012618 151 SRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230 (460)
Q Consensus 151 ~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 230 (460)
++.+|..|.||||+|+..++.+++++|+++|+ ..+..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus 150 ---~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~----~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~ 222 (434)
T PHA02874 150 ---VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA----YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN 222 (434)
T ss_pred ---CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC
Confidence 88999999999999999999999999999999 55667788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh-hHHHHHHhhhc
Q 012618 231 GRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES-NEEREKAILNE 296 (460)
Q Consensus 231 G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~-~~~~~~~ll~~ 296 (460)
|.||||+|+..+. +++.+|+ .|+++ ...+..|+|+|+.|+... ..+.++.++..
T Consensus 223 g~TpL~~A~~~~~-~~i~~Ll-~~~~i----------n~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ 277 (434)
T PHA02874 223 GFTPLHNAIIHNR-SAIELLI-NNASI----------NDQDIDGSTPLHHAINPPCDIDIIDILLYH 277 (434)
T ss_pred CCCHHHHHHHCCh-HHHHHHH-cCCCC----------CCcCCCCCCHHHHHHhcCCcHHHHHHHHHC
Confidence 9999999999876 4566665 35533 345667899999999865 67788888754
No 13
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=306.30 Aligned_cols=240 Identities=25% Similarity=0.274 Sum_probs=210.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
.+.||||+|+..|+.++|++|+++|++++.. +.+|.||||+|+..|+.+++++|++. +...+. ..+.+||+.|
T Consensus 36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~---~~~~~~--~~~~~~l~~a 108 (477)
T PHA02878 36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQP--DHRDLTPLHIICKEPNKLGMKEMIRS---INKCSV--FYTLVAIKDA 108 (477)
T ss_pred cCcchHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCccHhHHHHHHHH---Hhcccc--ccchhhHHHH
Confidence 5789999999999999999999999998654 56899999999999999999999997 544443 5678999999
Q ss_pred HHcCCHH---------------------------------HHHHHHHcCCccccCCCCC-CChHHHHHHHcCCHHHHHHH
Q 012618 90 AMNGKLS---------------------------------CVKKLIESGAFILNFDSLQ-GRTCLHYAAYYGHSDCLQAL 135 (460)
Q Consensus 90 ~~~g~~~---------------------------------~v~~Ll~~g~~~~~~~~~~-g~t~L~~A~~~g~~~iv~~L 135 (460)
+..++.+ ++++|++.|+++ +..+.. |.||||+|+..|+.+++++|
T Consensus 109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~L 187 (477)
T PHA02878 109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELL 187 (477)
T ss_pred HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence 9887654 556666677777 555666 99999999999999999999
Q ss_pred HHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhc-CCHHHH
Q 012618 136 LTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARG-GSLECI 214 (460)
Q Consensus 136 l~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~-g~~~~v 214 (460)
++.|++ ++.+|..|.||||+|+..++.+++++|++.|+ +.+.+|..|.||||+|+.. ++.+++
T Consensus 188 l~~gad------------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga----~in~~d~~g~TpLh~A~~~~~~~~iv 251 (477)
T PHA02878 188 LSYGAN------------VNIPDKTNNSPLHHAVKHYNKPIVHILLENGA----STDARDKCGNTPLHISVGYCKDYDIL 251 (477)
T ss_pred HHCCCC------------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHhcCCHHHH
Confidence 999988 89999999999999999999999999999999 5567788999999999975 799999
Q ss_pred HHHHHcCCCCCCCCC-CCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618 215 RELLAWGADRVQPDA-FGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES 285 (460)
Q Consensus 215 ~~Ll~~gad~~~~d~-~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~ 285 (460)
++|+++|++++..+. .|.||||+| .++.+++++|+++|++++. .+..|.|+|+.|+...
T Consensus 252 ~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~----------~d~~g~TpL~~A~~~~ 311 (477)
T PHA02878 252 KLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS----------LNSYKLTPLSSAVKQY 311 (477)
T ss_pred HHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHHHHHc
Confidence 999999999999886 799999999 5678999999999997664 4567889999998743
No 14
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=100.00 E-value=1.3e-35 Score=310.57 Aligned_cols=241 Identities=17% Similarity=0.128 Sum_probs=205.6
Q ss_pred CCcccc-CCCCCcHHHHHHHcCC--HHHHHHHHHcCCCcccccCCCCCccHHHHH-------------------------
Q 012618 2 GQRMSC-RERSESALFVAVENGD--LQMIEAMVEADPTVLGMTSGYGKQSALHLA------------------------- 53 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~--~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A------------------------- 53 (460)
|.+++. +..|.||||+|+..|+ .++|++|+++|++++.. +..|.||||+|
T Consensus 202 GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k--D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~ 279 (764)
T PHA02716 202 GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK--CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK 279 (764)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc
Confidence 556665 5689999999999995 59999999999998654 46899999975
Q ss_pred ------------HHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCccccCCCCCCChH
Q 012618 54 ------------AAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAM--NGKLSCVKKLIESGAFILNFDSLQGRTC 119 (460)
Q Consensus 54 ------------~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~g~t~ 119 (460)
+..|+.+++++|++. |++++.+|..|+||||+|+. .++.+++++|++.|+++ +.+|..|+||
T Consensus 280 ~~~~~L~~~i~AA~~g~leiVklLLe~---GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TP 355 (764)
T PHA02716 280 NIPMILHSYITLARNIDISVVYSFLQP---GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTV 355 (764)
T ss_pred cchhhhHHHHHHHHcCCHHHHHHHHhC---CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCH
Confidence 445788999999999 99999999999999999875 46899999999999998 7788999999
Q ss_pred HHHHHH--------------cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH----HHcCCHHHHHHHH
Q 012618 120 LHYAAY--------------YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA----ARQGWSECVHTLL 181 (460)
Q Consensus 120 L~~A~~--------------~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A----~~~g~~~~v~~Ll 181 (460)
||+|+. .++.+++++|++.|++ ++.+|..|.||||.+ ...++.+++++|+
T Consensus 356 LH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD------------In~kn~~G~TPLh~y~~~a~n~~~~dIvklLi 423 (764)
T PHA02716 356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD------------ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLI 423 (764)
T ss_pred HHHHHHhhhhhccccccccccChHHHHHHHHHCCCC------------CCCcCCCCCChHHHHHHHHHhcChHHHHHHHH
Confidence 999875 3689999999999998 899999999999942 3357789999999
Q ss_pred HcCCccc---------------------------------------------------------cCCCCCCCCCChHHHH
Q 012618 182 DNGALAC---------------------------------------------------------SSTGGNGYPGSTPLHF 204 (460)
Q Consensus 182 ~~ga~~~---------------------------------------------------------~~~~~~d~~g~TpLh~ 204 (460)
+.|+... ...+..|..|+||||+
T Consensus 424 s~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~ 503 (764)
T PHA02716 424 SDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHV 503 (764)
T ss_pred hCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHH
Confidence 9764210 0123446789999999
Q ss_pred HHhcCCH-----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH-----HHHHhhCCCCCCCCcc
Q 012618 205 AARGGSL-----ECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ-----ACAALLNPSSAEPLVW 260 (460)
Q Consensus 205 A~~~g~~-----~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~-----~i~~~Ll~~ga~~~~~ 260 (460)
|+..|+. +++++|+++|+|+|.+|.+|+||||+|+++++. +++++|+++|+++...
T Consensus 504 Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~ 569 (764)
T PHA02716 504 SIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV 569 (764)
T ss_pred HHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence 9999886 455999999999999999999999999999965 9999999999987654
No 15
>PHA03095 ankyrin-like protein; Provisional
Probab=100.00 E-value=3e-35 Score=303.44 Aligned_cols=235 Identities=23% Similarity=0.276 Sum_probs=213.9
Q ss_pred CCcccc-CCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCccHHHHHH--HcCcHHHHHHHHhccCCCCCCcc
Q 012618 2 GQRMSC-RERSESALFVAVENG-DLQMIEAMVEADPTVLGMTSGYGKQSALHLAA--AYGQIEVLSMLLDQFFLYTNTDA 77 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g-~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~ 77 (460)
|.+++. +..|.||||+|+..| ..+++++|+++|++++.. +..|.||||+|+ ..++.+++++|++. |++++.
T Consensus 73 Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~--~~~g~tpLh~a~~~~~~~~~iv~~Ll~~---gad~~~ 147 (471)
T PHA03095 73 GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK--DKVGRTPLHVYLSGFNINPKVIRLLLRK---GADVNA 147 (471)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHhhCCcCCHHHHHHHHHc---CCCCCc
Confidence 566665 458999999999999 599999999999998554 467899999999 56789999999999 999999
Q ss_pred CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCChHHHHHHHc--CCHHHHHHHHHhcCCCCCcccCCCccc
Q 012618 78 LNRYKQTPLMVAAMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY--GHSDCLQALLTAARTSPVANTWGFSRF 153 (460)
Q Consensus 78 ~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 153 (460)
.|..|.||||+|+..+ +.+++++|++.|+++... +..|+||||+|+.. ++.+++++|++.|++
T Consensus 148 ~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~------------ 214 (471)
T PHA03095 148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCD------------ 214 (471)
T ss_pred cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC------------
Confidence 9999999999999876 689999999999998444 88999999999875 788999999999998
Q ss_pred cccCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 012618 154 VNIRDESGATPLHLAARQGWS--ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231 (460)
Q Consensus 154 v~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G 231 (460)
++.+|..|.||||+|+..|+. .+++.|++.|+ +.+.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|
T Consensus 215 ~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~----din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g 290 (471)
T PHA03095 215 PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI----SINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG 290 (471)
T ss_pred CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 799999999999999999875 68999999999 566778899999999999999999999999999999999999
Q ss_pred CCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618 232 RIPYAIALKYKHQACAALLNPSSAEPL 258 (460)
Q Consensus 232 ~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 258 (460)
+|||++|+..++.+++++|++.++++.
T Consensus 291 ~tpl~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 291 NTPLSLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred CCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence 999999999999999999999998664
No 16
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=311.72 Aligned_cols=266 Identities=24% Similarity=0.276 Sum_probs=175.2
Q ss_pred CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccC----------
Q 012618 2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF---------- 70 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~---------- 70 (460)
|.+++. +..|.||||+|+..|+.++|++|+++|++++.. +.+|.||||+|+..++.+++++|++...
T Consensus 168 Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~--~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~ 245 (682)
T PHA02876 168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNII--ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLL 245 (682)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCcc--CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHH
Confidence 455554 456888888888888888888888888887543 3467788888888877777766654311
Q ss_pred ----------------CCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCccccCCCCCCChHHHHHHHcC-CHHHH
Q 012618 71 ----------------LYTNTDALNRYKQTPLMVAAMNGKL-SCVKKLIESGAFILNFDSLQGRTCLHYAAYYG-HSDCL 132 (460)
Q Consensus 71 ----------------~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~iv 132 (460)
.|++++..+..|.||||+|+..++. +++++|++.|+++ +..+..|.||||+|+..| +.+++
T Consensus 246 ~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v 324 (682)
T PHA02876 246 KAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENI 324 (682)
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHH
Confidence 1445666677788888888887775 5777888888776 666677888888888777 47778
Q ss_pred HHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCH
Q 012618 133 QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ-GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL 211 (460)
Q Consensus 133 ~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~ 211 (460)
++|+..+++ ++..|..|.||||+|+.. +..+++++|++.|+ +.+.+|..|.||||+|+..|+.
T Consensus 325 ~~Ll~~gad------------in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~ga----din~~d~~G~TpLh~Aa~~~~~ 388 (682)
T PHA02876 325 RTLIMLGAD------------VNAADRLYITPLHQASTLDRNKDIVITLLELGA----NVNARDYCDKTPIHYAAVRNNV 388 (682)
T ss_pred HHHHHcCCC------------CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCC----CCccCCCCCCCHHHHHHHcCCH
Confidence 888877776 555666666666666653 34556666666666 3344455566666666666666
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh-HHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh-hHHH
Q 012618 212 ECIRELLAWGADRVQPDAFGRIPYAIALKYKH-QACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES-NEER 289 (460)
Q Consensus 212 ~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~-~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~-~~~~ 289 (460)
+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|++++ ..+..|+|+|+.|+..+ ..+.
T Consensus 389 ~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin----------~~d~~G~TpLh~Aa~~~~~~~i 458 (682)
T PHA02876 389 VIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN----------SKNKDLSTPLHYACKKNCKLDV 458 (682)
T ss_pred HHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC----------cCCCCCChHHHHHHHhCCcHHH
Confidence 66666666666666666666666666654433 345566666665332 34556667777776644 3455
Q ss_pred HHHhhhc
Q 012618 290 EKAILNE 296 (460)
Q Consensus 290 ~~~ll~~ 296 (460)
++.+++.
T Consensus 459 v~lLl~~ 465 (682)
T PHA02876 459 IEMLLDN 465 (682)
T ss_pred HHHHHHC
Confidence 6665543
No 17
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=8.9e-36 Score=299.43 Aligned_cols=273 Identities=26% Similarity=0.315 Sum_probs=207.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618 9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV 88 (460)
Q Consensus 9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~ 88 (460)
..+.+|+|+|+..|+++.++.|++++++++.. +.+|.||||.|+..++.|+.+.|++. ++++-..|.+|.+|+|.
T Consensus 119 ~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~--de~~~TpLh~A~~~~~~E~~k~Li~~---~a~~~K~~~~~~~~iH~ 193 (929)
T KOG0510|consen 119 LNKNAPLHLAADSGNYSCLKLLLDYGADVNLE--DENGFTPLHLAARKNKVEAKKELINK---GADPCKSDIDGNFPIHE 193 (929)
T ss_pred hhccCchhhccccchHHHHHHHHHhcCCcccc--ccCCCchhhHHHhcChHHHHHHHHhc---CCCCCcccCcCCchHHH
Confidence 34555666666666666666666666555332 34555666666666666655666665 66666666666666666
Q ss_pred HHHcCCHHHHHHHHH-----cCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcc---cCCCccccccCCCC
Q 012618 89 AAMNGKLSCVKKLIE-----SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVAN---TWGFSRFVNIRDES 160 (460)
Q Consensus 89 A~~~g~~~~v~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~---~~~~~~~v~~~d~~ 160 (460)
|++.|..++++..+. ++..+ ++.+..+.||||.|+..|+.++++.+|+.+....... .......+|..|.+
T Consensus 194 aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d 272 (929)
T KOG0510|consen 194 AARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND 272 (929)
T ss_pred HHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc
Confidence 666666666666665 33334 6666778888888888888888888888776543222 22344568999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCCCHHHHH
Q 012618 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA-WG-ADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~g-ad~~~~d~~G~tpL~~A 238 (460)
|.||||+|++.|+.++++.|+..|+ +.+.++.++.||||.||++|+.++|+.||+ +| ...|..|..|.||||+|
T Consensus 273 g~tpLH~a~r~G~~~svd~Ll~~Ga----~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla 348 (929)
T KOG0510|consen 273 GCTPLHYAARQGGPESVDNLLGFGA----SINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA 348 (929)
T ss_pred CCchHHHHHHcCChhHHHHHHHcCC----cccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence 9999999999999999999999999 666777899999999999999999999999 54 56788899999999999
Q ss_pred HHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618 239 LKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI 298 (460)
Q Consensus 239 ~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~ 298 (460)
++.||..++++|+++||.... ....+.+++|+|+.|+..++...++.++....
T Consensus 349 a~~gH~~v~qlLl~~GA~~~~-------~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga 401 (929)
T KOG0510|consen 349 AKSGHDRVVQLLLNKGALFLN-------MSEADSDGNTALHLAAKYGNTSAVQKLISHGA 401 (929)
T ss_pred hhcCHHHHHHHHHhcChhhhc-------ccccccCCchhhhHHHHhccHHHHHHHHHcCC
Confidence 999999999999999996553 22458899999999999999999999986654
No 18
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=9.7e-35 Score=300.51 Aligned_cols=262 Identities=15% Similarity=0.152 Sum_probs=222.4
Q ss_pred CCccccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC------cHHHHHHHHhccCCCC
Q 012618 2 GQRMSCRERSESALFVAVEN--GDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG------QIEVLSMLLDQFFLYT 73 (460)
Q Consensus 2 g~~~~~~~~g~t~L~~Aa~~--g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~iv~~Ll~~~~~~~ 73 (460)
|.+++....|.|+|+.++.. ++.++|++|+++|++++... .+.||||.|+.++ +.+++++|+++ |+
T Consensus 26 GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~---~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~---Ga 99 (494)
T PHA02989 26 GFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG---YIETPLCAVLRNREITSNKIKKIVKLLLKF---GA 99 (494)
T ss_pred CCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC---CCCCcHHHHHhccCcchhhHHHHHHHHHHC---CC
Confidence 67777667799998776654 37999999999999997542 4589999998754 57899999999 99
Q ss_pred CCccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc--CCHHHHHHHHHhcCCCCCcccC
Q 012618 74 NTDALNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY--GHSDCLQALLTAARTSPVANTW 148 (460)
Q Consensus 74 ~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~ 148 (460)
++|.++..|.||||.|+.. ++.+++++|+++|+++.+..+..|+||||+|+.. ++.+++++|++.|++
T Consensus 100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad------- 172 (494)
T PHA02989 100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN------- 172 (494)
T ss_pred CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-------
Confidence 9999999999999988765 6899999999999998667788999999998764 689999999999998
Q ss_pred CCcccccc-CCCCCCCHHHHHHHcC----CHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhc------CCHHHHHHH
Q 012618 149 GFSRFVNI-RDESGATPLHLAARQG----WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARG------GSLECIREL 217 (460)
Q Consensus 149 ~~~~~v~~-~d~~g~t~L~~A~~~g----~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~------g~~~~v~~L 217 (460)
++. .+..|.||||+|+..+ +.+++++|+++|+++ +..+..+.||||.++.. +..+++++|
T Consensus 173 -----i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v----n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l 243 (494)
T PHA02989 173 -----LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI----ETNNNGSESVLESFLDNNKILSKKEFKVLNFI 243 (494)
T ss_pred -----ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc----cccCCccccHHHHHHHhchhhcccchHHHHHH
Confidence 666 6789999999998764 899999999999944 55566788999987654 356778876
Q ss_pred HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhc
Q 012618 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNE 296 (460)
Q Consensus 218 l~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~ 296 (460)
+. |+++|.+|..|+||||+|+..++.+++++|+++|++++. .+..|+|+|+.|+..++.+.++.+++.
T Consensus 244 ~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~----------~d~~G~TpL~~A~~~~~~~iv~~LL~~ 311 (494)
T PHA02989 244 LK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN----------VSKDGDTVLTYAIKHGNIDMLNRILQL 311 (494)
T ss_pred Hh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccc----------cCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 65 699999999999999999999999999999999996654 456788999999999999999888864
No 19
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-36 Score=249.97 Aligned_cols=196 Identities=29% Similarity=0.262 Sum_probs=176.8
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHc-CCccccCCCCCCChHHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR-YKQTPLMVAAMNGKLSCVKKLIES-GAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A 123 (460)
+.++.+.+++..-..-|+.|++..+ ..++.++. +|+||||+||..|+.+++.+|++. +..+ +-+|..||||||+|
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~--kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia 79 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDP--KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIA 79 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcCh--hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhh
Confidence 3577888888888888999998732 25566665 999999999999999999999964 4444 55678999999999
Q ss_pred HHcCCHHHHHHHHHh-cCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618 124 AYYGHSDCLQALLTA-ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202 (460)
Q Consensus 124 ~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL 202 (460)
+..|+.++|+.|+.. +++ +|..+..|.|+||||+..|+.+++++|+++|+ .++.+|..|.|||
T Consensus 80 ~s~g~~evVk~Ll~r~~ad------------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga----~i~~kD~~~qtpl 143 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGAD------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA----LIRIKDKQGQTPL 143 (226)
T ss_pred hhcCcHHHHHHHhcCCCCC------------cceecCCCcceehhhhcCChhhHHHHHHhcCC----CCcccccccCchh
Confidence 999999999999998 666 89999999999999999999999999999999 7788999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW 260 (460)
Q Consensus 203 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~ 260 (460)
|.|+.-|+++++++|+..|+.+|..|+.|+||||.|+..++.+++.+|+.+||+....
T Consensus 144 HRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~e 201 (226)
T KOG4412|consen 144 HRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRE 201 (226)
T ss_pred HHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeec
Confidence 9999999999999999999999999999999999999999999999999999976653
No 20
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-35 Score=294.22 Aligned_cols=245 Identities=26% Similarity=0.340 Sum_probs=219.2
Q ss_pred CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhc--cCCCCCCccC
Q 012618 2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ--FFLYTNTDAL 78 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~ 78 (460)
|.+++. ++.|.||||.|+..++.|..+.|++.|+++.. .+.+|++|+|.|+.+|..+..++++.+ +..+..+|..
T Consensus 144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K--~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~ 221 (929)
T KOG0510|consen 144 GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCK--SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD 221 (929)
T ss_pred cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCc--ccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccc
Confidence 445565 45678899999999999999999999999854 456899999999999999999999982 1127889999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCcc--------------ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCC
Q 012618 79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFI--------------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144 (460)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~--------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 144 (460)
+..|.||||.|+..|++++++.+|+.|..+ ++..|.+|.||||+|++.|+.+.+..|+..|++
T Consensus 222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~--- 298 (929)
T KOG0510|consen 222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS--- 298 (929)
T ss_pred cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc---
Confidence 999999999999999999999999998743 345678999999999999999999999999999
Q ss_pred cccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223 (460)
Q Consensus 145 ~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 223 (460)
++.++.++.||||.||..|+.++|+.||+ .|. ...+..|..|.||||+|+++|+..++++||++||+
T Consensus 299 ---------I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~---rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~ 366 (929)
T KOG0510|consen 299 ---------INSKNKDEESPLHFAAIYGRINTVERLLQESDT---RLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL 366 (929)
T ss_pred ---------ccccCCCCCCchHHHHHcccHHHHHHHHhCcCc---cccccccccCCCchhhhhhcCHHHHHHHHHhcChh
Confidence 89999999999999999999999999999 443 46778889999999999999999999999999999
Q ss_pred CC---CCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCccccc
Q 012618 224 RV---QPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQ 263 (460)
Q Consensus 224 ~~---~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~ 263 (460)
.. ..|.+|.||||+|+.+|+..++++|+.+||+....+..
T Consensus 367 ~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~ 409 (929)
T KOG0510|consen 367 FLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKK 409 (929)
T ss_pred hhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccc
Confidence 87 56999999999999999999999999999987654433
No 21
>PHA02876 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=311.58 Aligned_cols=270 Identities=23% Similarity=0.276 Sum_probs=217.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHH---------------------------------
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAA--------------------------------- 54 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~--------------------------------- 54 (460)
...+.||||+|+..|+.++|+.|++.+++.... .+..|.||||+|+
T Consensus 38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~-~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 116 (682)
T PHA02876 38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELIYI-TDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHK 116 (682)
T ss_pred ccccchHHHHHHHHHhhhHHHHHHHhCcccchh-hchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence 346899999999999999999999999986543 4567899999665
Q ss_pred -------------------------------------HcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q 012618 55 -------------------------------------AYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSC 97 (460)
Q Consensus 55 -------------------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 97 (460)
..|+.+++++|++. |+++|.+|..|.||||+|+..|+.++
T Consensus 117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~---Gadvn~~d~~G~TpLh~Aa~~G~~~i 193 (682)
T PHA02876 117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG---GADVNAKDIYCITPIHYAAERGNAKM 193 (682)
T ss_pred HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 45778999999999 99999999999999999999999999
Q ss_pred HHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCccc-----------------CCCccccccCCCC
Q 012618 98 VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANT-----------------WGFSRFVNIRDES 160 (460)
Q Consensus 98 v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~-----------------~~~~~~v~~~d~~ 160 (460)
|++|++.|+++ +..+..|.||||+|+..++.+++++|++.+........ ...+..++..|..
T Consensus 194 v~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~ 272 (682)
T PHA02876 194 VNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDC 272 (682)
T ss_pred HHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 99999999998 77778999999999999999999999887654321110 0111236677888
Q ss_pred CCCHHHHHHHcCCH-HHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618 161 GATPLHLAARQGWS-ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG-SLECIRELLAWGADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 161 g~t~L~~A~~~g~~-~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~d~~G~tpL~~A 238 (460)
|.||||+|+..++. +++++|++.|+ +.+..|..|.||||+|+..| +.+++++|+..|++++..|..|.||||+|
T Consensus 273 g~TpLh~Aa~~~~~~~iv~lLl~~ga----din~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A 348 (682)
T PHA02876 273 KNTPLHHASQAPSLSRLVPKLLERGA----DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA 348 (682)
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence 88888888888876 58888888888 44566777888888888887 57888888888888888888888888888
Q ss_pred HHh-ChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhc
Q 012618 239 LKY-KHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNE 296 (460)
Q Consensus 239 ~~~-~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~ 296 (460)
+.. ++.+++++|++.|+++.. .+..++++|+.|+..++.+.++.+++.
T Consensus 349 ~~~~~~~~iv~lLl~~gadin~----------~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ 397 (682)
T PHA02876 349 STLDRNKDIVITLLELGANVNA----------RDYCDKTPIHYAAVRNNVVIINTLLDY 397 (682)
T ss_pred HHhCCcHHHHHHHHHcCCCCcc----------CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 775 467778888888775543 344567778888877777777777754
No 22
>PHA02798 ankyrin-like protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=294.05 Aligned_cols=234 Identities=16% Similarity=0.176 Sum_probs=206.3
Q ss_pred CCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHc-----CcHHHHHHHHhccCCCCCCccCCCC
Q 012618 9 ERSESALFVAVE--NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY-----GQIEVLSMLLDQFFLYTNTDALNRY 81 (460)
Q Consensus 9 ~~g~t~L~~Aa~--~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~~~ 81 (460)
..+.|+++.+.. .++.++|++|+++|++++.. +..|.||||.|+.+ ++.+++++|+++ |+++|.+|..
T Consensus 34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~---GadiN~~d~~ 108 (489)
T PHA02798 34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGL--DNEYSTPLCTILSNIKDYKHMLDIVKILIEN---GADINKKNSD 108 (489)
T ss_pred cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCC--CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC---CCCCCCCCCC
Confidence 356677764554 45899999999999998654 46789999999865 679999999999 9999999999
Q ss_pred CCcHHHHHHHcC---CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC---HHHHHHHHHhcCCCCCcccCCCccccc
Q 012618 82 KQTPLMVAAMNG---KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH---SDCLQALLTAARTSPVANTWGFSRFVN 155 (460)
Q Consensus 82 g~tpL~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~v~ 155 (460)
|.||||+|+.++ +.+++++|+++|+++ +..+..|.||||+|+..++ .+++++|++.|++ ++
T Consensus 109 G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad------------in 175 (489)
T PHA02798 109 GETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD------------IN 175 (489)
T ss_pred cCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC------------cc
Confidence 999999999875 789999999999998 7888999999999999998 9999999999988 67
Q ss_pred cCC-CCCCCHHHHHHHc----CCHHHHHHHHHcCCcccc-----------------------------------CCCCCC
Q 012618 156 IRD-ESGATPLHLAARQ----GWSECVHTLLDNGALACS-----------------------------------STGGNG 195 (460)
Q Consensus 156 ~~d-~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~~~~-----------------------------------~~~~~d 195 (460)
..+ ..|.||||.++.. ++.+++++|+++|++++. +++.+|
T Consensus 176 ~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d 255 (489)
T PHA02798 176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD 255 (489)
T ss_pred cccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence 664 5789999998765 478999999999986643 345577
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618 196 YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW 260 (460)
Q Consensus 196 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~ 260 (460)
..|.||||+|+..|+.+++++|+++|||++.+|..|+|||++|+..++.++++.|+++++++...
T Consensus 256 ~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i 320 (489)
T PHA02798 256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTI 320 (489)
T ss_pred cCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999987643
No 23
>PHA02989 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=290.85 Aligned_cols=232 Identities=15% Similarity=0.134 Sum_probs=204.9
Q ss_pred CCccccCCCCCcHHHHHHHcC------CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHc---CcHHHHHHHHhccCCC
Q 012618 2 GQRMSCRERSESALFVAVENG------DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLY 72 (460)
Q Consensus 2 g~~~~~~~~g~t~L~~Aa~~g------~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~ 72 (460)
|.+++....+.||||.|+.++ ..++|++|+++|++++.. +..|.||||.|+.. ++.+++++|+++ |
T Consensus 60 GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~---G 134 (494)
T PHA02989 60 GADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLK--TFNGVSPIVCFIYNSNINNCDMLRFLLSK---G 134 (494)
T ss_pred CCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHhcccCcHHHHHHHHHC---C
Confidence 667776667899999998764 478999999999998654 46799999998865 689999999999 9
Q ss_pred CCC-ccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC----CHHHHHHHHHhcCCCCCc
Q 012618 73 TNT-DALNRYKQTPLMVAAMN--GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG----HSDCLQALLTAARTSPVA 145 (460)
Q Consensus 73 ~~~-~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g----~~~iv~~Ll~~~~~~~~~ 145 (460)
+++ +..|..|+||||+|+.. ++.+++++|+++|+++....+..|.||||+|+..+ +.+++++|++.|++
T Consensus 135 adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~---- 210 (494)
T PHA02989 135 INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN---- 210 (494)
T ss_pred CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC----
Confidence 999 89999999999999764 68999999999999985546788999999998764 89999999999998
Q ss_pred ccCCCccccccCCCCCCCHHHHHHHcC------CHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 012618 146 NTWGFSRFVNIRDESGATPLHLAARQG------WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219 (460)
Q Consensus 146 ~~~~~~~~v~~~d~~g~t~L~~A~~~g------~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 219 (460)
++.++..+.|+||.++..+ ..+++++|+. |+ +++.+|..|+||||+|+..|+.+++++|++
T Consensus 211 --------vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~a----dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~ 277 (494)
T PHA02989 211 --------IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YI----KINKKDKKGFNPLLISAKVDNYEAFNYLLK 277 (494)
T ss_pred --------ccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CC----CCCCCCCCCCCHHHHHHHhcCHHHHHHHHH
Confidence 8888999999999877643 4678887665 67 667788899999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 220 WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 220 ~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
+|+|++.+|..|+||||+|+..++.+++++|++.++
T Consensus 278 ~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p 313 (494)
T PHA02989 278 LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP 313 (494)
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 999999999999999999999999999999998875
No 24
>PHA02875 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=285.46 Aligned_cols=224 Identities=22% Similarity=0.211 Sum_probs=203.5
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 125 (460)
.+++||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..+.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVE 77 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHH
Confidence 35899999999999999999999 9999999999999999999999999999999999987 6666789999999999
Q ss_pred cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205 (460)
Q Consensus 126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A 205 (460)
.|+.+++++|++.+... .+..+..|.||||+|+..|+.+++++|+++|+ +.+..+..|.||||+|
T Consensus 78 ~g~~~~v~~Ll~~~~~~-----------~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga----d~~~~~~~g~tpLh~A 142 (413)
T PHA02875 78 EGDVKAVEELLDLGKFA-----------DDVFYKDGMTPLHLATILKKLDIMKLLIARGA----DPDIPNTDKFSPLHLA 142 (413)
T ss_pred CCCHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHhCCHHHHHHHHhCCC----CCCCCCCCCCCHHHHH
Confidence 99999999999998763 35567789999999999999999999999999 5566778899999999
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES 285 (460)
Q Consensus 206 ~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~ 285 (460)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..... ..+.++++.|+..+
T Consensus 143 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~---------~~~~t~l~~A~~~~ 213 (413)
T PHA02875 143 VMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK---------NGCVAALCYAIENN 213 (413)
T ss_pred HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCC---------CCCchHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999998775321 12257899999999
Q ss_pred hHHHHHHhhhcc
Q 012618 286 NEEREKAILNET 297 (460)
Q Consensus 286 ~~~~~~~ll~~~ 297 (460)
..+.++.+++..
T Consensus 214 ~~~iv~~Ll~~g 225 (413)
T PHA02875 214 KIDIVRLFIKRG 225 (413)
T ss_pred CHHHHHHHHHCC
Confidence 999999998754
No 25
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=282.10 Aligned_cols=208 Identities=33% Similarity=0.480 Sum_probs=192.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC-CCCCcHHHHH
Q 012618 12 ESALFVAVENGDLQMIEAMVEA-DPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN-RYKQTPLMVA 89 (460)
Q Consensus 12 ~t~L~~Aa~~g~~~~vk~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~~g~tpL~~A 89 (460)
...++.|++.|+++.|+.|++. +.+++. .|.+|.|+||+|+.+++++++++|+++ |+++|... ..+.||||+|
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~--~D~~g~tlLHWAAiNNrl~v~r~li~~---gadvn~~gG~l~stPLHWA 119 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNN--PDREGVTLLHWAAINNRLDVARYLISH---GADVNAIGGVLGSTPLHWA 119 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCC--CCcCCccceeHHHHcCcHHHHHHHHHc---CCCccccCCCCCCCcchHH
Confidence 3468899999999999999998 777644 356999999999999999999999999 99999998 7789999999
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
+++|++.+|++|+++||++ +..|.+|.+|||+|+..|+.-+|-+|+.++++ +|.+|.+|+||||+|+
T Consensus 120 ar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d------------~d~~D~~grTpLmwAa 186 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD------------IDLRDNNGRTPLMWAA 186 (600)
T ss_pred HHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc------------CCCcCCCCCCHHHHHH
Confidence 9999999999999999999 88899999999999999999999999999987 8999999999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 012618 170 RQGWSECVHTLLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY 241 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~ 241 (460)
.+|....+..||+.|+ .....| ..|+||||+|+..|+..++.+|++.|++.+..|.+|.||+.+|.++
T Consensus 187 ykg~~~~v~~LL~f~a----~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 187 YKGFALFVRRLLKFGA----SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred HhcccHHHHHHHHhcc----cccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence 9999988999999999 444444 8899999999999999999977888899999999999999999877
No 26
>PHA02878 ankyrin repeat protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=286.82 Aligned_cols=226 Identities=21% Similarity=0.240 Sum_probs=195.7
Q ss_pred CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHH------------------
Q 012618 2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVL------------------ 62 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv------------------ 62 (460)
|.+++. +..|.||||+|+..|+.+.+++|++.+..... ..+.++|+.|+..++.+++
T Consensus 60 gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~ 135 (477)
T PHA02878 60 GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVY 135 (477)
T ss_pred CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHH
Confidence 556654 56899999999999999999999998765532 3457899999988876654
Q ss_pred ---------------HHHHhccCCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618 63 ---------------SMLLDQFFLYTNTDALNRY-KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126 (460)
Q Consensus 63 ---------------~~Ll~~~~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 126 (460)
++|++. |++++..+.. |.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus 136 ~~~~~~~~~~~~~iv~~Ll~~---gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~ 211 (477)
T PHA02878 136 IDKKSKDDIIEAEITKLLLSY---GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKH 211 (477)
T ss_pred HhhccchhhHHHHHHHHHHHc---CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHh
Confidence 455555 8889999988 999999999999999999999999998 77888999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCccccCCCCCC-CCCChHHHH
Q 012618 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ-GWSECVHTLLDNGALACSSTGGNG-YPGSTPLHF 204 (460)
Q Consensus 127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~d-~~g~TpLh~ 204 (460)
|+.+++++|++.|++ ++.+|..|.||||+|+.. ++.+++++|+++|++++ ..+ ..|.||||+
T Consensus 212 ~~~~iv~~Ll~~ga~------------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn----~~~~~~g~TpLh~ 275 (477)
T PHA02878 212 YNKPIVHILLENGAS------------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN----AKSYILGLTALHS 275 (477)
T ss_pred CCHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC----ccCCCCCCCHHHH
Confidence 999999999999998 899999999999999976 78999999999999554 344 369999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC-hHHHHHhhCCC
Q 012618 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK-HQACAALLNPS 253 (460)
Q Consensus 205 A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~-~~~i~~~Ll~~ 253 (460)
| .++.+++++|+++|+|++..|..|.||||+|+..+ ..+++++|+.+
T Consensus 276 A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~ 323 (477)
T PHA02878 276 S--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323 (477)
T ss_pred H--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence 9 56899999999999999999999999999999754 45677776554
No 27
>PHA02917 ankyrin-like protein; Provisional
Probab=100.00 E-value=9.6e-33 Score=290.59 Aligned_cols=262 Identities=16% Similarity=0.214 Sum_probs=197.4
Q ss_pred CCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC---------------------------
Q 012618 8 RERSESALFVAVEN---GDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG--------------------------- 57 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~---g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--------------------------- 57 (460)
++.|.||||+|+.. |+.++|++||+.|++++. .+..|.||||+|+..|
T Consensus 29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~--~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~ 106 (661)
T PHA02917 29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLH--KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIF 106 (661)
T ss_pred CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccc--cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchH
Confidence 66899999997655 889999999999999854 3567889999877654
Q ss_pred --------cHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCccccCCC---CCC--------
Q 012618 58 --------QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA--MNGKLSCVKKLIESGAFILNFDS---LQG-------- 116 (460)
Q Consensus 58 --------~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~---~~g-------- 116 (460)
+.++|++|+++ |+++|.+|..|.||||.|+ ..|+.+++++|+++|+++. ..+ ..|
T Consensus 107 ~~~a~~~~~~e~vk~Ll~~---Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~~~~~~~~ 182 (661)
T PHA02917 107 SYMKSKNVDVDLIKVLVEH---GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGYAYDDYQP 182 (661)
T ss_pred HHHHhhcCCHHHHHHHHHc---CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccccccccccc
Confidence 45667777777 9999999999999999654 4789999999999999883 222 233
Q ss_pred ---ChHHHHHHH-----------cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCH--------
Q 012618 117 ---RTCLHYAAY-----------YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS-------- 174 (460)
Q Consensus 117 ---~t~L~~A~~-----------~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~-------- 174 (460)
.||||+|+. +++.+++++|++.|++ +|.+|.+|.||||+|+..|+.
T Consensus 183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad------------vn~~d~~G~TpLh~A~~~g~~~~eivk~L 250 (661)
T PHA02917 183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK------------PSSIDKNYCTALQYYIKSSHIDIDIVKLL 250 (661)
T ss_pred cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC------------cccCCCCCCcHHHHHHHcCCCcHHHHHHH
Confidence 599999986 5689999999999998 666666666666666654431
Q ss_pred ---------------------------------------H----------------------------------------
Q 012618 175 ---------------------------------------E---------------------------------------- 175 (460)
Q Consensus 175 ---------------------------------------~---------------------------------------- 175 (460)
+
T Consensus 251 i~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (661)
T PHA02917 251 MKGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDV 330 (661)
T ss_pred HhCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHH
Confidence 2
Q ss_pred -----------------HHHHHHHcCCccccC--------------------------CCCCCCCCChHHHHHHhcC---
Q 012618 176 -----------------CVHTLLDNGALACSS--------------------------TGGNGYPGSTPLHFAARGG--- 209 (460)
Q Consensus 176 -----------------~v~~Ll~~ga~~~~~--------------------------~~~~d~~g~TpLh~A~~~g--- 209 (460)
++++|+++||+++.. ....+..|.||||.|++.+
T Consensus 331 ~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~ 410 (661)
T PHA02917 331 LQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGC 410 (661)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccc
Confidence 334444444432211 1122334889999887543
Q ss_pred --------------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCC
Q 012618 210 --------------------SLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTD 269 (460)
Q Consensus 210 --------------------~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~ 269 (460)
..+++++|+++|+|+|.+|..|+||||+|+..++.+++++|+++|+++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~---------- 480 (661)
T PHA02917 411 YNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNI---------- 480 (661)
T ss_pred hhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCC----------
Confidence 35678999999999999999999999999999999999999999986543
Q ss_pred CCHHHHHHHHHHHh-hhhHHHHHHhhhcc
Q 012618 270 LNPEAKELLEKALM-ESNEEREKAILNET 297 (460)
Q Consensus 270 ~~~~~~~~L~~a~~-~~~~~~~~~ll~~~ 297 (460)
.+..++++|+.|.. ..+.+..+.++...
T Consensus 481 ~d~~G~T~L~~A~~~~~~~~iv~~LL~~g 509 (661)
T PHA02917 481 RSNNGYTCIAIAINESRNIELLKMLLCHK 509 (661)
T ss_pred CCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 55678889999986 56778888777543
No 28
>PHA02798 ankyrin-like protein; Provisional
Probab=99.98 E-value=5.6e-31 Score=272.15 Aligned_cols=241 Identities=18% Similarity=0.179 Sum_probs=205.4
Q ss_pred CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHc--CcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc-----CCH
Q 012618 23 DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY--GQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN-----GKL 95 (460)
Q Consensus 23 ~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~-----g~~ 95 (460)
.++.|+.|++.+. ++.. ..+.|+++.+... ++.++|++|+++ |+++|..+..|.||||.|+.+ ++.
T Consensus 17 ~~~~v~~ll~~~~-~~~~---~~~~~~~~~yl~~~~~~~~iv~~Ll~~---Gadvn~~d~~g~TpL~~~~~n~~~~~~~~ 89 (489)
T PHA02798 17 KLSTVKLLIKSCN-PNEI---VNEYSIFQKYLQRDSPSTDIVKLFINL---GANVNGLDNEYSTPLCTILSNIKDYKHML 89 (489)
T ss_pred cHHHHHHHHhcCC-hhhh---cccchHHHHHHhCCCCCHHHHHHHHHC---CCCCCCCCCCCCChHHHHHHhHHhHHhHH
Confidence 5789999998653 3222 3466877755544 479999999999 999999999999999999864 678
Q ss_pred HHHHHHHHcCCccccCCCCCCChHHHHHHHcC---CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcC
Q 012618 96 SCVKKLIESGAFILNFDSLQGRTCLHYAAYYG---HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172 (460)
Q Consensus 96 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g 172 (460)
+++++|+++|+++ +..+..|+||||+|+..+ +.+++++|++.|++ ++.+|..|.||||+|+..+
T Consensus 90 ~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad------------vn~~d~~g~tpL~~a~~~~ 156 (489)
T PHA02798 90 DIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD------------TTLLDKDGFTMLQVYLQSN 156 (489)
T ss_pred HHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC------------ccccCCCCCcHHHHHHHcC
Confidence 9999999999998 788889999999999875 78999999999998 8999999999999999999
Q ss_pred C---HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhc----CCHHHHHHHHHcCCC----------------------
Q 012618 173 W---SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARG----GSLECIRELLAWGAD---------------------- 223 (460)
Q Consensus 173 ~---~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~----g~~~~v~~Ll~~gad---------------------- 223 (460)
+ .+++++|+++|++++... +..|.||||.++.. ++.+++++|+++|++
T Consensus 157 ~~~~~~vv~~Ll~~gadin~~~---~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~ 233 (489)
T PHA02798 157 HHIDIEIIKLLLEKGVDINTHN---NKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYD 233 (489)
T ss_pred CcchHHHHHHHHHhCCCccccc---CcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhh
Confidence 8 999999999999554321 34688999988764 478999999888764
Q ss_pred -----------------CCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhh
Q 012618 224 -----------------RVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESN 286 (460)
Q Consensus 224 -----------------~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~ 286 (460)
+|.+|..|+||||+|+.+++.+++++|+++||+++. .+..|+|+|+.|+...+
T Consensus 234 ~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~----------~d~~G~TpL~~A~~~~~ 303 (489)
T PHA02798 234 NKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI----------ITELGNTCLFTAFENES 303 (489)
T ss_pred cccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccc----------cCCCCCcHHHHHHHcCc
Confidence 445677899999999999999999999999997654 56678999999999999
Q ss_pred HHHHHHhhhc
Q 012618 287 EEREKAILNE 296 (460)
Q Consensus 287 ~~~~~~ll~~ 296 (460)
.+..+.+++.
T Consensus 304 ~~iv~~lL~~ 313 (489)
T PHA02798 304 KFIFNSILNK 313 (489)
T ss_pred HHHHHHHHcc
Confidence 9999988854
No 29
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.97 E-value=2.9e-31 Score=262.52 Aligned_cols=210 Identities=30% Similarity=0.375 Sum_probs=188.6
Q ss_pred ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126 (460)
Q Consensus 47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 126 (460)
..-++.|+++|.++.|+.|++.. +..++..|.+|.|+||+|+.+++++++++|+++|++++.....-+.||||+|+++
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~--g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~ 122 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESE--GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN 122 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhc--CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence 45688999999999999999974 8889999999999999999999999999999999999666557889999999999
Q ss_pred CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA 206 (460)
Q Consensus 127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~ 206 (460)
|+..+|.+|+++|++ ++.+|..|.+|||+|++.|+...|-+||.+|+ +.+.+|.+|+||||+|+
T Consensus 123 G~~~vv~lLlqhGAd------------pt~~D~~G~~~lHla~~~~~~~~vayll~~~~----d~d~~D~~grTpLmwAa 186 (600)
T KOG0509|consen 123 GHISVVDLLLQHGAD------------PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA----DIDLRDNNGRTPLMWAA 186 (600)
T ss_pred CcHHHHHHHHHcCCC------------CceecCCCCcHHHHHHHhCchHHHHHHHHhcc----cCCCcCCCCCCHHHHHH
Confidence 999999999999999 79999999999999999999999999999998 77888999999999999
Q ss_pred hcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhh
Q 012618 207 RGGSLECIRELLAWGADRVQPD-AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALME 284 (460)
Q Consensus 207 ~~g~~~~v~~Ll~~gad~~~~d-~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~ 284 (460)
..|+...++.||+.|+.++..| ..|.||||+|+..|+..++.+|++.|++... .+..|++++.-|...
T Consensus 187 ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~----------~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 187 YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDK----------TNTNGKTPFDLAQER 255 (600)
T ss_pred HhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccc----------cccCCCCHHHHHHHh
Confidence 9999998999999999999998 8999999999999999999977777764433 333356666555443
No 30
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.97 E-value=8e-32 Score=286.93 Aligned_cols=262 Identities=31% Similarity=0.369 Sum_probs=213.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618 6 SCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP 85 (460)
Q Consensus 6 ~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp 85 (460)
...+++.++++.|+..|.+++++.++..|.+++.. ...|.||||.|+.+++..+|++++++ +++++..+..|+||
T Consensus 369 ~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~--gk~gvTplh~aa~~~~~~~v~l~l~~---gA~~~~~~~lG~T~ 443 (1143)
T KOG4177|consen 369 QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSA--GKNGVTPLHVAAHYGNPRVVKLLLKR---GASPNAKAKLGYTP 443 (1143)
T ss_pred cccccCCcchhhhcccCchhHHHhhhhccCCcccC--CCCCcceeeehhhccCcceEEEEecc---CCChhhHhhcCCCh
Confidence 34678999999999999999999999999996544 45789999999999999999999998 99999999999999
Q ss_pred HHHHHHcC-CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618 86 LMVAAMNG-KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164 (460)
Q Consensus 86 L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~ 164 (460)
+|+|+..| ..++...++..|.++ +.....|.||||+|+..|+.+++..|++.++. ++.....+.++
T Consensus 444 lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~------------~~~~~~~~l~~ 510 (1143)
T KOG4177|consen 444 LHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN------------DNLDAKKGLTP 510 (1143)
T ss_pred hhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCc------------cCccchhccch
Confidence 99999999 888999999999988 77778999999999999999999999998866 56666777777
Q ss_pred HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ 244 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~ 244 (460)
||.|...+...+++.++++|+ ..+.++..|.||||.|+..|+.++|++||++|+|++.+++.|+||||.|+..|+.
T Consensus 511 lhla~~~~~v~~~~~l~~~ga----~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~ 586 (1143)
T KOG4177|consen 511 LHLAADEDTVKVAKILLEHGA----NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHN 586 (1143)
T ss_pred hhhhhhhhhHHHHHHHhhcCC----ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChH
Confidence 777777777777777777777 4455556677788888877888888888888888777777778888888777777
Q ss_pred HHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcccc
Q 012618 245 ACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETIC 299 (460)
Q Consensus 245 ~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~~ 299 (460)
+|+.+|+++||+++. .+.++.|+|..|...+....++.++.....
T Consensus 587 ~i~~LLlk~GA~vna----------~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 587 DIAELLLKHGASVNA----------ADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred HHHHHHHHcCCCCCc----------ccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 778888777774443 455677777777777777777777655443
No 31
>PHA02730 ankyrin-like protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=260.24 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=137.0
Q ss_pred CCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC--cHHHHHHHHhccCCCCCC--ccCCC
Q 012618 8 RERSESALFVAVENG---DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG--QIEVLSMLLDQFFLYTNT--DALNR 80 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g---~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~--~~~~~ 80 (460)
+..|.||||+|+..| +.++|++||++|++++. .+..|.||||+|+..+ +.++|++|++. |+++ +..+.
T Consensus 38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~--kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~---~~~~~~~~~~~ 112 (672)
T PHA02730 38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC--RNNEGLTPLGVYSKRKYVKSQIVHLLISS---YSNASNELTSN 112 (672)
T ss_pred CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc--cCCCCCChHHHHHHcCCCcHHHHHHHHhc---CCCCCcccccc
Confidence 567999999999997 59999999999999964 4678999999999977 79999999998 6644 66777
Q ss_pred CCCcHHHHHHH--cCCHHHHHHHHH-cCCccccCCC----CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCc----c---
Q 012618 81 YKQTPLMVAAM--NGKLSCVKKLIE-SGAFILNFDS----LQGRTCLHYAAYYGHSDCLQALLTAARTSPVA----N--- 146 (460)
Q Consensus 81 ~g~tpL~~A~~--~g~~~~v~~Ll~-~g~~~~~~~~----~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~----~--- 146 (460)
.+.+|||.++. +++.++|++|+. .++++....+ ..|.+|+++|...++.++|++|++.|++...- .
T Consensus 113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~ 192 (672)
T PHA02730 113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD 192 (672)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc
Confidence 78899998888 889999999996 5566533322 37889999999999999999999998876200 0
Q ss_pred -cC---------------------------CCccccccCCCCCCCHHHH--HHHcCCHHHHHHHHH
Q 012618 147 -TW---------------------------GFSRFVNIRDESGATPLHL--AARQGWSECVHTLLD 182 (460)
Q Consensus 147 -~~---------------------------~~~~~v~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~ 182 (460)
.. ..+..+|.+|..|.||||+ |...++.|+|++|++
T Consensus 193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~ 258 (672)
T PHA02730 193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK 258 (672)
T ss_pred CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence 00 1223489999999999996 445567999999999
No 32
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=232.43 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=155.1
Q ss_pred CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHY 122 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 122 (460)
.+.||||+|+..|+.++|+.|++. ++..|..|.||||+|+..+ +.+++++|++.|+++....+..|+||||+
T Consensus 20 ~~~~pL~~A~~~~~~~~vk~Li~~------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~ 93 (209)
T PHA02859 20 RYCNPLFYYVEKDDIEGVKKWIKF------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH 93 (209)
T ss_pred ccCcHHHHHHHhCcHHHHHHHHHh------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence 457999999999999999999975 4567888999999999864 89999999999999944434589999999
Q ss_pred HHHc---CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH--cCCHHHHHHHHHcCCccccCCCCCCCC
Q 012618 123 AAYY---GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR--QGWSECVHTLLDNGALACSSTGGNGYP 197 (460)
Q Consensus 123 A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~~~~~~d~~ 197 (460)
|+.. ++.+++++|++.|++ +|.+|..|.||||+|+. .++.+++++|+++|+ +++.+|..
T Consensus 94 a~~~~~~~~~eiv~~Ll~~gad------------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga----din~~d~~ 157 (209)
T PHA02859 94 YLSFNKNVEPEILKILIDSGSS------------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV----SFLNKDFD 157 (209)
T ss_pred HHHhCccccHHHHHHHHHCCCC------------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC----CcccccCC
Confidence 8764 479999999999998 89999999999999986 468999999999999 55667889
Q ss_pred CChHHHH-HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618 198 GSTPLHF-AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK 242 (460)
Q Consensus 198 g~TpLh~-A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~ 242 (460)
|.||||. |+..++.+++++|+++|++++.+|..|+|||++|..++
T Consensus 158 g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 158 NNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred CCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 9999995 56788999999999999999999999999999998764
No 33
>PHA02917 ankyrin-like protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=264.54 Aligned_cols=213 Identities=18% Similarity=0.138 Sum_probs=178.1
Q ss_pred HHHHHHHHHcCCCcccccCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHH----
Q 012618 24 LQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS---- 96 (460)
Q Consensus 24 ~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~---- 96 (460)
++.|+.|+..+.... ..+.+|+||||+|+.. |+.++|++||+. |++++..+..|.||||+|+..|+.+
T Consensus 12 ~~~~~~l~~~~~~~~--~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~---ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~ 86 (661)
T PHA02917 12 LDELKQMLRDRDPND--TRNQFKNNALHAYLFNEHCNNVEVVKLLLDS---GTNPLHKNWRQLTPLEEYTNSRHVKVNKD 86 (661)
T ss_pred HHHHHHHHhccCccc--ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC---CCCccccCCCCCCHHHHHHHcCChhHHHH
Confidence 578899998777663 3367899999998655 889999999999 9999999999999999999999854
Q ss_pred HHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH--HcCCH
Q 012618 97 CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA--RQGWS 174 (460)
Q Consensus 97 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~--~~g~~ 174 (460)
++++|++.+... +..+ ..++++.|+..++.++|++|++.|++ +|..|..|.||||+|+ ..|+.
T Consensus 87 ~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad------------in~~d~~g~T~L~~~~a~~~~~~ 151 (661)
T PHA02917 87 IAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFD------------LSVKCENHRSVIENYVMTDDPVP 151 (661)
T ss_pred HHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCC------------CCccCCCCccHHHHHHHccCCCH
Confidence 567888875432 3333 34778889999999999999999999 8999999999999654 57899
Q ss_pred HHHHHHHHcCCccccCCCCCCC-----------CCChHHHHHHh-----------cCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618 175 ECVHTLLDNGALACSSTGGNGY-----------PGSTPLHFAAR-----------GGSLECIRELLAWGADRVQPDAFGR 232 (460)
Q Consensus 175 ~~v~~Ll~~ga~~~~~~~~~d~-----------~g~TpLh~A~~-----------~g~~~~v~~Ll~~gad~~~~d~~G~ 232 (460)
+++++|+++|++++.. +..+. .+.||||+|+. .++.++|++|+++|+|+|.+|.+|.
T Consensus 152 eivklLi~~Ga~vn~~-d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~ 230 (661)
T PHA02917 152 EIIDLFIENGCSVLYE-DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYC 230 (661)
T ss_pred HHHHHHHHcCCCcccc-ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCC
Confidence 9999999999977532 11222 33699999986 4689999999999999999999999
Q ss_pred CHHHHHHHhChH--HHHHhhCCCCCCCC
Q 012618 233 IPYAIALKYKHQ--ACAALLNPSSAEPL 258 (460)
Q Consensus 233 tpL~~A~~~~~~--~i~~~Ll~~ga~~~ 258 (460)
||||+|+..++. +++++|++ |++..
T Consensus 231 TpLh~A~~~g~~~~eivk~Li~-g~d~~ 257 (661)
T PHA02917 231 TALQYYIKSSHIDIDIVKLLMK-GIDNT 257 (661)
T ss_pred cHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence 999999999985 79999975 77554
No 34
>PHA02730 ankyrin-like protein; Provisional
Probab=99.97 E-value=7e-29 Score=255.40 Aligned_cols=255 Identities=17% Similarity=0.125 Sum_probs=195.2
Q ss_pred CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC---cHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC--CHHH
Q 012618 23 DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG---QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG--KLSC 97 (460)
Q Consensus 23 ~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~ 97 (460)
....+++.++.-++++. ..+.+|+||||+|+.+| +.++|++||++ |++++.+|..|+||||+|+..+ +.++
T Consensus 19 ~~~~~~~~~~~~~~in~-~kd~~G~TaLh~A~~~~~~~~~eivklLLs~---GAdin~kD~~G~TPLh~Aa~~~~~~~eI 94 (672)
T PHA02730 19 TYKKIKLEIETCHNLSK-HIDRRGNNALHCYVSNKCDTDIKIVRLLLSR---GVERLCRNNEGLTPLGVYSKRKYVKSQI 94 (672)
T ss_pred hHHHHHHHHHHhcchhh-hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC---CCCCcccCCCCCChHHHHHHcCCCcHHH
Confidence 35678888988878763 34568999999999997 59999999999 9999999999999999999976 7999
Q ss_pred HHHHHHcCCcc-ccCCCCCCChHHHHHHH--cCCHHHHHHHHHhc-CCCCCccc-----CC-------------------
Q 012618 98 VKKLIESGAFI-LNFDSLQGRTCLHYAAY--YGHSDCLQALLTAA-RTSPVANT-----WG------------------- 149 (460)
Q Consensus 98 v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~~-~~~~~~~~-----~~------------------- 149 (460)
|++|++.|++. .+..+.-+.+|||.++. .++.++|++|+..+ .++..... .+
T Consensus 95 v~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklL 174 (672)
T PHA02730 95 VHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWL 174 (672)
T ss_pred HHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHH
Confidence 99999997643 13355568899999988 89999999999733 33222210 11
Q ss_pred --Cccccc-------cCCCCC-CCHHHHHH------HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH--HHhcCCH
Q 012618 150 --FSRFVN-------IRDESG-ATPLHLAA------RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF--AARGGSL 211 (460)
Q Consensus 150 --~~~~v~-------~~d~~g-~t~L~~A~------~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~--A~~~g~~ 211 (460)
.+..++ ..+..+ .|.||+++ .++..+++++|+++|| +++.+|..|.||||+ |...++.
T Consensus 175 i~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Ga----dIN~kd~~G~TpLh~~~~~~~~~~ 250 (672)
T PHA02730 175 LKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNV----SIHGRDEGGSLPIQYYWSCSTIDI 250 (672)
T ss_pred HHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCcccH
Confidence 111121 123333 35566443 4578899999999999 667788999999995 5566789
Q ss_pred HHHHHHHH--------------------------------cCCCCCC--------------------CCCCCCC------
Q 012618 212 ECIRELLA--------------------------------WGADRVQ--------------------PDAFGRI------ 233 (460)
Q Consensus 212 ~~v~~Ll~--------------------------------~gad~~~--------------------~d~~G~t------ 233 (460)
++|++|++ +|+|... .|..|.+
T Consensus 251 eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 330 (672)
T PHA02730 251 EIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDN 330 (672)
T ss_pred HHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHH
Confidence 99999999 7998866 5666755
Q ss_pred ---------------HHHHHHHhC---hHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhh----HHHHH
Q 012618 234 ---------------PYAIALKYK---HQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESN----EEREK 291 (460)
Q Consensus 234 ---------------pL~~A~~~~---~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~----~~~~~ 291 (460)
.|+.-+..+ +.+++++|+++||+++. . ..+.|+|+.|+...+ .+.++
T Consensus 331 i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~----------k-~~G~TpLH~Aa~~nnn~i~~eIve 399 (672)
T PHA02730 331 ILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK----------T-TDNNYPLHDYFVNNNNIVDVNVVR 399 (672)
T ss_pred HHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc----------C-CCCCcHHHHHHHHcCCcchHHHHH
Confidence 667667755 58999999999997762 1 357899998887764 78898
Q ss_pred Hhhhc
Q 012618 292 AILNE 296 (460)
Q Consensus 292 ~ll~~ 296 (460)
.++..
T Consensus 400 lLIs~ 404 (672)
T PHA02730 400 FIVEN 404 (672)
T ss_pred HHHHc
Confidence 88864
No 35
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.97 E-value=7.6e-30 Score=242.54 Aligned_cols=217 Identities=26% Similarity=0.349 Sum_probs=180.6
Q ss_pred HHHHHcCCHHHHHHHHHcCCCc---ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc--------CCCCCCc
Q 012618 16 FVAVENGDLQMIEAMVEADPTV---LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA--------LNRYKQT 84 (460)
Q Consensus 16 ~~Aa~~g~~~~vk~Ll~~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------~~~~g~t 84 (460)
.-|++.|.+..+..|+-...+. .-.....+|.|||.+|+++|+.++|++|++++ ++++.. ....|-+
T Consensus 9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~--~a~~e~~GsV~FDge~Iegap 86 (615)
T KOG0508|consen 9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHC--RASPEQGGSVRFDGETIEGAP 86 (615)
T ss_pred HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHh--cCCccCCceEEeCCcccCCCc
Confidence 3688888888888888764421 11112356779999999999999999999964 444432 3356788
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164 (460)
Q Consensus 85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~ 164 (460)
||..|+..||+++|+.|+++|+++ +.......|||-.|+.-|+.++|++|++++++ ++..|..|.|.
T Consensus 87 pLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad------------~~IanrhGhTc 153 (615)
T KOG0508|consen 87 PLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD------------PEIANRHGHTC 153 (615)
T ss_pred hhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCC------------CcccccCCCee
Confidence 999999999999999999999888 54555677999999999999999999999998 78889999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ 244 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~ 244 (460)
||+|+..|+.+++++|++.|+ +++.++..|+|+||.|+..|+++++++|+++|+-+. +|..|.|||..|...|+.
T Consensus 154 LmIa~ykGh~~I~qyLle~gA----Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~ 228 (615)
T KOG0508|consen 154 LMIACYKGHVDIAQYLLEQGA----DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHT 228 (615)
T ss_pred EEeeeccCchHHHHHHHHhCC----CcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcch
Confidence 999999999999999999999 566777889999999999999999999999998875 466699999999999999
Q ss_pred HHHHhhCC
Q 012618 245 ACAALLNP 252 (460)
Q Consensus 245 ~i~~~Ll~ 252 (460)
+++++|+.
T Consensus 229 ~iVe~L~~ 236 (615)
T KOG0508|consen 229 DIVERLLQ 236 (615)
T ss_pred HHHHHHhc
Confidence 99999985
No 36
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=243.92 Aligned_cols=193 Identities=32% Similarity=0.414 Sum_probs=174.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCc------ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccC
Q 012618 6 SCRERSESALFVAVENGDLQMIEAMVEA-DPTV------LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDAL 78 (460)
Q Consensus 6 ~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~-~~~~------~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 78 (460)
+...+|.|||.+||++|+.++|++|+++ ++++ .......+|-+||..|+..||+++|+.|+++ |+++|..
T Consensus 37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~---ga~VN~t 113 (615)
T KOG0508|consen 37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR---GASVNDT 113 (615)
T ss_pred ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh---cCccccc
Confidence 4456788999999999999999999994 3332 1112235688999999999999999999999 9999998
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618 79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158 (460)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d 158 (460)
.....|||-.||.-|+.++|++|+++|+++ +..|..|.|+||+|++.|+.+|+++|++.|++ +|.++
T Consensus 114 T~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD------------vn~ks 180 (615)
T KOG0508|consen 114 TRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGAD------------VNAKS 180 (615)
T ss_pred cccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCC------------cchhc
Confidence 888889999999999999999999999999 89999999999999999999999999999999 99999
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 219 (460)
..|+|+||.++..|+.+++++|+.+|+.+. .|..|.|||..|+..|+.++|++|+.
T Consensus 181 ~kGNTALH~caEsG~vdivq~Ll~~ga~i~-----~d~~GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 181 YKGNTALHDCAESGSVDIVQLLLKHGAKID-----VDGHGMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred ccCchHHHhhhhcccHHHHHHHHhCCceee-----ecCCCCchHHHHhhhcchHHHHHHhc
Confidence 999999999999999999999999998442 34569999999999999999999996
No 37
>PHA02795 ankyrin-like protein; Provisional
Probab=99.96 E-value=7.3e-29 Score=244.21 Aligned_cols=211 Identities=14% Similarity=0.022 Sum_probs=182.7
Q ss_pred HHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCc------cCCCCCCcHHHHHHH--cCCHHH
Q 012618 26 MIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTD------ALNRYKQTPLMVAAM--NGKLSC 97 (460)
Q Consensus 26 ~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~------~~~~~g~tpL~~A~~--~g~~~~ 97 (460)
+-++++.+|++++.... +| +|+..+..|++++|+.+ |++++ .++..++|+||.|+. .|+.++
T Consensus 64 ~~~~~~~~~~~i~~~~~--~~-----~~~~~~~k~~~~~l~s~---~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei 133 (437)
T PHA02795 64 LYDYFRIHRDNIDQYIV--DR-----LFAYITYKDIISALVSK---NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI 133 (437)
T ss_pred HHHHHHHcCcchhhhhh--hh-----HHhhcchHHHHHHHHhc---ccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence 34788889998866543 33 89999999999999999 99988 778889999999999 899999
Q ss_pred HHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHH
Q 012618 98 VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECV 177 (460)
Q Consensus 98 v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v 177 (460)
|++|+++|+++ +.. .+.||||.|+..++.+++++|+++|+...... ..+..+..+.|++|.|+..++.+++
T Consensus 134 V~~LI~~GADI-n~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~------~~~l~~~~~~t~l~~a~~~~~~eIv 204 (437)
T PHA02795 134 VDFMVDHGAVI-YKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDV------KLDLYKIIQYTRGFLVDEPTVLEIY 204 (437)
T ss_pred HHHHHHCCCCC-CCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccc------cchhhhhhccchhHHHHhcCHHHHH
Confidence 99999999998 443 46899999999999999999999997531100 0222335688999999999999999
Q ss_pred HHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC--------hHHHHHh
Q 012618 178 HTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK--------HQACAAL 249 (460)
Q Consensus 178 ~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~--------~~~i~~~ 249 (460)
++|+++|+ +.+.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..| +.+++++
T Consensus 205 e~LIs~GA----DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvel 280 (437)
T PHA02795 205 KLCIPYIE----DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEI 280 (437)
T ss_pred HHHHhCcC----CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHH
Confidence 99999999 55677889999999999999999999999999999999999999999999988 4699999
Q ss_pred hCCCCCCCCc
Q 012618 250 LNPSSAEPLV 259 (460)
Q Consensus 250 Ll~~ga~~~~ 259 (460)
|+++|++...
T Consensus 281 LL~~gadI~~ 290 (437)
T PHA02795 281 LLREPLSIDC 290 (437)
T ss_pred HHhCCCCCCc
Confidence 9999997664
No 38
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.96 E-value=1.1e-29 Score=270.73 Aligned_cols=228 Identities=30% Similarity=0.388 Sum_probs=215.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC-cHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG-QIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
+..|.||||.|+..++..+|+.+++++++.+.. +..|.||+|+|+..| ..++...+++. +.++|.....|+|||
T Consensus 404 gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~--~~lG~T~lhvaa~~g~~~~~~~~l~~~---g~~~n~~s~~G~T~L 478 (1143)
T KOG4177|consen 404 GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAK--AKLGYTPLHVAAKKGRYLQIARLLLQY---GADPNAVSKQGFTPL 478 (1143)
T ss_pred CCCCcceeeehhhccCcceEEEEeccCCChhhH--hhcCCChhhhhhhcccHhhhhhhHhhc---CCCcchhccccCcch
Confidence 457899999999999999999999999998665 457899999999999 88999999998 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHH
Q 012618 87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~ 166 (460)
|+|+..|+.++++.|++.++.. +.....+.++||.|...+...+++.+++.+++ ++.++.+|+||||
T Consensus 479 hlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~------------v~~~~~r~~TpLh 545 (1143)
T KOG4177|consen 479 HLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLEHGAN------------VDLRTGRGYTPLH 545 (1143)
T ss_pred hhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhhcCCc------------eehhcccccchHH
Confidence 9999999999999999999776 66677899999999999999999999999998 8999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHH
Q 012618 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246 (460)
Q Consensus 167 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i 246 (460)
+|+..|+..+|++||++|+ +.+.++..|+||||.|+..|+.+++++|+++||++|..|.+|.|||++|+..++.++
T Consensus 546 ~A~~~g~v~~VkfLLe~gA----dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~ 621 (1143)
T KOG4177|consen 546 VAVHYGNVDLVKFLLEHGA----DVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSV 621 (1143)
T ss_pred HHHhcCCchHHHHhhhCCc----cccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccch
Confidence 9999999999999999999 556677899999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCC
Q 012618 247 AALLNPSSAEP 257 (460)
Q Consensus 247 ~~~Ll~~ga~~ 257 (460)
+++|...++++
T Consensus 622 ~k~l~~~~~~~ 632 (1143)
T KOG4177|consen 622 VKLLKVVTATP 632 (1143)
T ss_pred hhHHHhccCcc
Confidence 99999999984
No 39
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.96 E-value=4.7e-28 Score=221.60 Aligned_cols=177 Identities=14% Similarity=0.106 Sum_probs=155.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC--cHHHHHHHHhccCCCCCCccCC-CCCCc
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG--QIEVLSMLLDQFFLYTNTDALN-RYKQT 84 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~-~~g~t 84 (460)
.+.+.+||++|+..|+.++|+.|++.... .+..|.||||+|+.++ +.+++++|++. |++++.++ ..|.|
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~n~-----~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~---gadvn~~~~~~g~T 89 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKFVND-----CNDLYETPIFSCLEKDKVNVEILKFLIEN---GADVNFKTRDNNLS 89 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHhhhc-----cCccCCCHHHHHHHcCCCCHHHHHHHHHC---CCCCCccCCCCCCC
Confidence 35678999999999999999999986322 2457899999999865 89999999999 99999997 58999
Q ss_pred HHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCChHHHHHHH--cCCHHHHHHHHHhcCCCCCcccCCCccccccCCC
Q 012618 85 PLMVAAMN---GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY--YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE 159 (460)
Q Consensus 85 pL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~ 159 (460)
|||+|+.. ++.+++++|+++|+++ +..+..|.||||+|+. .++.+++++|++.|++ ++.+|.
T Consensus 90 pLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad------------in~~d~ 156 (209)
T PHA02859 90 ALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS------------FLNKDF 156 (209)
T ss_pred HHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC------------cccccC
Confidence 99998764 4799999999999998 7788999999999986 4689999999999988 899999
Q ss_pred CCCCHHHH-HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC
Q 012618 160 SGATPLHL-AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209 (460)
Q Consensus 160 ~g~t~L~~-A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g 209 (460)
.|.||||. |+..++.+++++|+++|+ +++.+|..|.||||+|+.++
T Consensus 157 ~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga----di~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 157 DNNNILYSYILFHSDKKIFDFLTSLGI----DINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred CCCcHHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHhhhh
Confidence 99999996 567889999999999999 55677889999999998754
No 40
>PHA02792 ankyrin-like protein; Provisional
Probab=99.96 E-value=6.1e-28 Score=245.93 Aligned_cols=255 Identities=13% Similarity=0.118 Sum_probs=201.8
Q ss_pred CCCCcHHHH-HHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHH-cCcHHHHHHHHhccCCCCCC-----------
Q 012618 9 ERSESALFV-AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAA-YGQIEVLSMLLDQFFLYTNT----------- 75 (460)
Q Consensus 9 ~~g~t~L~~-Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~~----------- 75 (460)
-.|.+++++ |..+|++|+|++|+++|++++.. +.++.||||+|+. .++.|++++||++ |+++
T Consensus 69 ~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~--~n~~~~~l~ya~~~~~~~eivk~Ll~~---Gad~~~~~~~g~~~~ 143 (631)
T PHA02792 69 INDFDIFEYLCSDNIDIELLKLLISKGLEINSI--KNGINIVEKYATTSNPNVDVFKLLLDK---GIPTCSNIQYGYKII 143 (631)
T ss_pred cCCccHHHHHHHhcccHHHHHHHHHcCCCcccc--cCCCCcceeEeecCCCChHHHHHHHHC---CCCcccccccCcchh
Confidence 357778865 56789999999999999999755 3468899999966 6999999999999 6652
Q ss_pred -------------------------ccCCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 76 -------------------------DALNRYKQTPLMVAAMNG-------KLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 76 -------------------------~~~~~~g~tpL~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
|..+..|.||||+|+.++ +.++++.|+++|+++ +..|..|.||||+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~ 222 (631)
T PHA02792 144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYY 222 (631)
T ss_pred hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHH
Confidence 244567999999999999 899999999999999 66677899999999
Q ss_pred HHcC--CHHHHHHHHHhcCCCC--------------------Cc--------------------ccCCCc----------
Q 012618 124 AYYG--HSDCLQALLTAARTSP--------------------VA--------------------NTWGFS---------- 151 (460)
Q Consensus 124 ~~~g--~~~iv~~Ll~~~~~~~--------------------~~--------------------~~~~~~---------- 151 (460)
+... ..+++++|+.....-. +. ..+...
T Consensus 223 ~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 302 (631)
T PHA02792 223 VDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRY 302 (631)
T ss_pred HHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence 9999 7899999987532100 00 000000
Q ss_pred ---------------------------cccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCC--CChHH
Q 012618 152 ---------------------------RFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP--GSTPL 202 (460)
Q Consensus 152 ---------------------------~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~--g~TpL 202 (460)
.-.+........+++.|+..|+.++|++|+++||++ +.+|.. +.|||
T Consensus 303 ~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI----N~kD~~g~~~TpL 378 (631)
T PHA02792 303 TDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV----VEDDDNIINIMPL 378 (631)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch----hhhcCCCCChhHH
Confidence 001111223566789999999999999999999955 444444 46999
Q ss_pred HHHHhcCCH---HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHH
Q 012618 203 HFAARGGSL---ECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLE 279 (460)
Q Consensus 203 h~A~~~g~~---~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~ 279 (460)
|+|...... +++++|+++|||+|.+|..|+||||+|+..++.+++++|+++|++++. .+..++++|+
T Consensus 379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~----------kD~~G~TpL~ 448 (631)
T PHA02792 379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI----------TTKYGSTCIG 448 (631)
T ss_pred HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHH
Confidence 998877665 468999999999999999999999999999999999999999996554 5667788888
Q ss_pred HHHh
Q 012618 280 KALM 283 (460)
Q Consensus 280 ~a~~ 283 (460)
.|..
T Consensus 449 ~A~~ 452 (631)
T PHA02792 449 ICVI 452 (631)
T ss_pred HHHH
Confidence 8865
No 41
>PHA02792 ankyrin-like protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=243.73 Aligned_cols=235 Identities=12% Similarity=0.065 Sum_probs=190.8
Q ss_pred CCcccc-CCCCCcHHHHHHH-cCCHHHHHHHHHcCCCccc--c--------------------------------cCCCC
Q 012618 2 GQRMSC-RERSESALFVAVE-NGDLQMIEAMVEADPTVLG--M--------------------------------TSGYG 45 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~-~g~~~~vk~Ll~~~~~~~~--~--------------------------------~~~~~ 45 (460)
|++++. +..+.++|++|+. .|+.|+|++||++|++... . ..+..
T Consensus 95 GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 174 (631)
T PHA02792 95 GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRM 174 (631)
T ss_pred CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCC
Confidence 566654 4567889899966 6999999999999986311 0 12335
Q ss_pred CccHHHHHHHcC-------cHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHc------------
Q 012618 46 KQSALHLAAAYG-------QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG--KLSCVKKLIES------------ 104 (460)
Q Consensus 46 g~t~Lh~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~------------ 104 (460)
|.||||+|+.++ +.++++.||.+ |++++.+|..|.||||+|+.+. ..|++++|++.
T Consensus 175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~---g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~ 251 (631)
T PHA02792 175 GKTVLYYYIITRSQDGYATSLDVINYLISH---EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILS 251 (631)
T ss_pred CCchHHHHHhhCCcccccCCHHHHHHHHhC---CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHH
Confidence 899999999999 89999999999 9999999999999999999887 55666655542
Q ss_pred -------------------------------------------------------------------------------C
Q 012618 105 -------------------------------------------------------------------------------G 105 (460)
Q Consensus 105 -------------------------------------------------------------------------------g 105 (460)
|
T Consensus 252 ~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~G 331 (631)
T PHA02792 252 NYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEG 331 (631)
T ss_pred HHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCC
Confidence 2
Q ss_pred CccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC--CCHHHHHHHcCCH---HHHHHH
Q 012618 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG--ATPLHLAARQGWS---ECVHTL 180 (460)
Q Consensus 106 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g--~t~L~~A~~~g~~---~~v~~L 180 (460)
++.. ......+++.|+..|+.+++++|+++|++ ++.+|..| .||||+|...... +++++|
T Consensus 332 a~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD------------IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklL 396 (631)
T PHA02792 332 ATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV------------VVEDDDNIINIMPLFPTLSIHESDVLSILKLC 396 (631)
T ss_pred Cccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc------------hhhhcCCCCChhHHHHHHHhccHhHHHHHHHH
Confidence 2221 11356678899999999999999999998 78888775 6999998877654 468899
Q ss_pred HHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----------hChHHHHHhh
Q 012618 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK----------YKHQACAALL 250 (460)
Q Consensus 181 l~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~----------~~~~~i~~~L 250 (460)
+++|+ +.+.+|..|.||||+|+..++.+++++|+++|++++..|..|.|||++|+. ....+++++|
T Consensus 397 Is~GA----DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lL 472 (631)
T PHA02792 397 KPYID----DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEII 472 (631)
T ss_pred HhcCC----ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999 556778899999999999999999999999999999999999999999976 2235779999
Q ss_pred CCCCCCCC
Q 012618 251 NPSSAEPL 258 (460)
Q Consensus 251 l~~ga~~~ 258 (460)
+++++++.
T Consensus 473 Ls~~p~i~ 480 (631)
T PHA02792 473 LSKLPTIE 480 (631)
T ss_pred HhcCCChh
Confidence 99987543
No 42
>PHA02795 ankyrin-like protein; Provisional
Probab=99.96 E-value=6e-28 Score=237.74 Aligned_cols=213 Identities=17% Similarity=0.053 Sum_probs=182.0
Q ss_pred HHHHcCCHHHHHHHHHcCCCcccc----cCCCCCccHHHHHHH--cCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618 17 VAVENGDLQMIEAMVEADPTVLGM----TSGYGKQSALHLAAA--YGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA 90 (460)
Q Consensus 17 ~Aa~~g~~~~vk~Ll~~~~~~~~~----~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~ 90 (460)
+|+..+..|+++.|+.+|++++.. ..+..++|+||.|+. .|+.++|++|+++ |++++.. ++.||||.|+
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~---GADIn~~--~~~t~lh~A~ 157 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH---GAVIYKI--ECLNAYFRGI 157 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC---CCCCCCC--CCCCHHHHHH
Confidence 899999999999999999997611 234568999999999 8999999999999 9999974 4589999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCC-----CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHH
Q 012618 91 MNGKLSCVKKLIESGAFILNFDS-----LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165 (460)
Q Consensus 91 ~~g~~~~v~~Ll~~g~~~~~~~~-----~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L 165 (460)
..++.+++++|+++|+++.+..+ ..+.|++|.|+..++.+++++|+++|++ +|.+|..|.|||
T Consensus 158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD------------IN~kD~~G~TpL 225 (437)
T PHA02795 158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED------------INQLDAGGRTLL 225 (437)
T ss_pred HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC------------cCcCCCCCCCHH
Confidence 99999999999999986533331 3478999999999999999999999998 899999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCC--------HHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGS--------LECIRELLAWGADRVQPDAFGRIPYAI 237 (460)
Q Consensus 166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~--------~~~v~~Ll~~gad~~~~d~~G~tpL~~ 237 (460)
|+|+..|+.+++++|+++|+ +.+.+|..|.||||+|+..|+ .+++++|+++|++++..+.. .+..
T Consensus 226 h~Aa~~g~~eiVelLL~~GA----dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~ 298 (437)
T PHA02795 226 YRAIYAGYIDLVSWLLENGA----NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNN 298 (437)
T ss_pred HHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhc
Confidence 99999999999999999999 556778899999999999984 69999999999999765432 2211
Q ss_pred HHHhChHHHHHhhCCCCC
Q 012618 238 ALKYKHQACAALLNPSSA 255 (460)
Q Consensus 238 A~~~~~~~i~~~Ll~~ga 255 (460)
...+.++++.|+.+..
T Consensus 299 --~~~n~~~ik~lI~y~~ 314 (437)
T PHA02795 299 --TIENHDVIKLCIKYFM 314 (437)
T ss_pred --ccchHHHHHHHHHHHH
Confidence 1226788888877765
No 43
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.94 E-value=1.9e-27 Score=205.54 Aligned_cols=222 Identities=27% Similarity=0.325 Sum_probs=200.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618 9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV 88 (460)
Q Consensus 9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~ 88 (460)
..|+..+-.|...|+.++++.++...++-+..+ +.+|.++++.|+-.++...++.+|.+ ++..|..+-.+++|+++
T Consensus 60 ~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t-~p~g~~~~~v~ap~~s~~k~sttltN---~~rgnevs~~p~s~~sl 135 (296)
T KOG0502|consen 60 ALGESLLTVAVRSGNSDVAVQSAQLDPDAIDET-DPEGWSALLVAAPCGSVDKVSTTLTN---GARGNEVSLMPWSPLSL 135 (296)
T ss_pred hcCCcccchhhhcCCcHHHHHhhccCCCCCCCC-CchhhhhhhhcCCCCCcceeeeeecc---cccCCccccccCChhhH
Confidence 457778888999999999999998887765554 46799999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH
Q 012618 89 AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168 (460)
Q Consensus 89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A 168 (460)
++...+.+++..+.++.. +..|..|.|||++|+..|++++|++|++.|++ ++...+...++|.+|
T Consensus 136 sVhql~L~~~~~~~~n~V---N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd------------p~~lgk~resALsLA 200 (296)
T KOG0502|consen 136 SVHQLHLDVVDLLVNNKV---NACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD------------PDALGKYRESALSLA 200 (296)
T ss_pred HHHHHHHHHHHHHhhccc---cCccccCchHhHHHHhcCchHHHHHHHHcCCC------------hhhhhhhhhhhHhHH
Confidence 999999998888877643 77889999999999999999999999999999 677788899999999
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHH
Q 012618 169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAA 248 (460)
Q Consensus 169 ~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~ 248 (460)
.+.|..++|++||+.+. +++..|.+|-|||-+|++.++.++|+.||+.|||++..+..|.+++.+|+..|+. +++
T Consensus 201 t~ggytdiV~lLL~r~v----dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vq 275 (296)
T KOG0502|consen 201 TRGGYTDIVELLLTREV----DVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQ 275 (296)
T ss_pred hcCChHHHHHHHHhcCC----CcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHH
Confidence 99999999999999999 6677899999999999999999999999999999999999999999999999987 666
Q ss_pred hhCCCC
Q 012618 249 LLNPSS 254 (460)
Q Consensus 249 ~Ll~~g 254 (460)
..+++-
T Consensus 276 qvie~h 281 (296)
T KOG0502|consen 276 QVIEKH 281 (296)
T ss_pred HHHHHH
Confidence 555443
No 44
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.94 E-value=2.9e-25 Score=242.23 Aligned_cols=176 Identities=23% Similarity=0.263 Sum_probs=154.4
Q ss_pred CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA 124 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~ 124 (460)
++.++||.||..|+.++++.|++. |+++|..|..|.||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+
T Consensus 524 ~~~~~L~~Aa~~g~~~~l~~Ll~~---G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~ 599 (823)
T PLN03192 524 NMASNLLTVASTGNAALLEELLKA---KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI 599 (823)
T ss_pred cchhHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence 456889999999999999999998 9999999999999999999999999999999999987 778889999999999
Q ss_pred HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH
Q 012618 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204 (460)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~ 204 (460)
..|+.+++++|++.++. . ....+.++||.|+..|+.+++++|+++|+ +.+.+|..|.||||+
T Consensus 600 ~~g~~~iv~~L~~~~~~------------~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga----din~~d~~G~TpLh~ 661 (823)
T PLN03192 600 SAKHHKIFRILYHFASI------------S--DPHAAGDLLCTAAKRNDLTAMKELLKQGL----NVDSEDHQGATALQV 661 (823)
T ss_pred HhCCHHHHHHHHhcCcc------------c--CcccCchHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCCCCCHHHH
Confidence 99999999999977654 1 23457789999999999999999999999 556678889999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHhC
Q 012618 205 AARGGSLECIRELLAWGADRVQPDAFG-RIPYAIALKYK 242 (460)
Q Consensus 205 A~~~g~~~~v~~Ll~~gad~~~~d~~G-~tpL~~A~~~~ 242 (460)
|+..|+.+++++|+++|+|++..|..| .||+.++....
T Consensus 662 A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~ 700 (823)
T PLN03192 662 AMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ 700 (823)
T ss_pred HHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999888 89988875543
No 45
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.94 E-value=3.8e-26 Score=228.74 Aligned_cols=230 Identities=28% Similarity=0.322 Sum_probs=183.7
Q ss_pred cHHHHHHHcCCHHHHHHHHHcC-----C------CcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCC
Q 012618 13 SALFVAVENGDLQMIEAMVEAD-----P------TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRY 81 (460)
Q Consensus 13 t~L~~Aa~~g~~~~vk~Ll~~~-----~------~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 81 (460)
+-|..|++.|+++.|..||+.. + .......+++|.|+||.|+.+|+.+++++|++. .+.++..+..
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~---ea~ldl~d~k 81 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY---EALLDLCDTK 81 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc---hhhhhhhhcc
Confidence 4577888889999999888742 1 122233457888999999999999999999988 7888888888
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618 82 KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161 (460)
Q Consensus 82 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g 161 (460)
|.+|||+|+.+|+.+++++|+..+.. .+..+..|.||||.|+..||.+++.+|+.++++ .-.+|..+
T Consensus 82 g~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad------------p~i~nns~ 148 (854)
T KOG0507|consen 82 GILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD------------PFIRNNSK 148 (854)
T ss_pred CcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCC------------ccccCccc
Confidence 88999999999999999998888844 477778888999999999999999999998888 46678888
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcccc----CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618 162 ATPLHLAARQGWSECVHTLLDNGALACS----STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237 (460)
Q Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~----~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~ 237 (460)
.|+|.+|++.|..++|+.|+....++.. ....++..+.+|||+|+++|+.++++.|++.|.|+|.....| |+||.
T Consensus 149 ~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talhe 227 (854)
T KOG0507|consen 149 ETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHE 227 (854)
T ss_pred ccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhh
Confidence 8999999999999999988877332211 123445667888999999999999999999999988876665 78999
Q ss_pred HHHhChHHHHHhhCCCCCCCCc
Q 012618 238 ALKYKHQACAALLNPSSAEPLV 259 (460)
Q Consensus 238 A~~~~~~~i~~~Ll~~ga~~~~ 259 (460)
|+..|..+++.+|++.|.....
T Consensus 228 aalcgk~evvr~ll~~gin~h~ 249 (854)
T KOG0507|consen 228 AALCGKAEVVRFLLEIGINTHI 249 (854)
T ss_pred HhhcCcchhhhHHHhhcccccc
Confidence 9999999999999888874443
No 46
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.93 E-value=7.1e-26 Score=245.47 Aligned_cols=231 Identities=21% Similarity=0.132 Sum_probs=178.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCccHHH-HHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEA--DPTVLGMTSGYGKQSALH-LAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~--~~~~~~~~~~~~g~t~Lh-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
.++.+|+.|++.|+.+.|+.+++. +.++ ...+..|.|||| .|+.+++.+++++|++. ++ .+..|.|||
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i--n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~---g~----~~~~G~T~L 86 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNI--NCPDRLGRSALFVAAIENENLELTELLLNL---SC----RGAVGDTLL 86 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCC--CCcCccchhHHHHHHHhcChHHHHHHHHhC---CC----CCCcChHHH
Confidence 567899999999999999999998 5555 344678999999 89999999999999998 65 577899999
Q ss_pred HHHHHcC---CHHHHHHHHHcCCc---------cccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618 87 MVAAMNG---KLSCVKKLIESGAF---------ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV 154 (460)
Q Consensus 87 ~~A~~~g---~~~~v~~Ll~~g~~---------~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v 154 (460)
|.|+..+ ...+++.+...+.+ ........|.||||+|+..|+.++|++|++.|++.+..........-
T Consensus 87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~ 166 (743)
T TIGR00870 87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKS 166 (743)
T ss_pred HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcC
Confidence 9998732 22344444444432 11112346999999999999999999999999984421110000000
Q ss_pred c--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC---------CHHHHHHHHHcCCC
Q 012618 155 N--IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG---------SLECIRELLAWGAD 223 (460)
Q Consensus 155 ~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g---------~~~~v~~Ll~~gad 223 (460)
. .....|.||||+|+..|+.+++++|+++|+ +.+..|..|+||||+|+..+ ...+.+++++.++.
T Consensus 167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga----din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~ 242 (743)
T TIGR00870 167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPA----DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK 242 (743)
T ss_pred CCCCcccccccHHHHHHHhCCHHHHHHHhcCCc----chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 0 112468999999999999999999999999 55667889999999999986 23456667666555
Q ss_pred C-------CCCCCCCCCHHHHHHHhChHHHHHhhCCC
Q 012618 224 R-------VQPDAFGRIPYAIALKYKHQACAALLNPS 253 (460)
Q Consensus 224 ~-------~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ 253 (460)
. +..|.+|.||||+|+..|+.+++++|++.
T Consensus 243 ~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 243 LRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred cCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 4 66799999999999999999999999884
No 47
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-25 Score=223.84 Aligned_cols=231 Identities=28% Similarity=0.299 Sum_probs=198.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..|.|+||.|+.+|+.++++.|+++.+-+.... ..|.+|||+|++.|+.+++++||.+ +..+|..+..|.||||
T Consensus 46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g~~e~vkmll~q---~d~~na~~~e~~tplh 120 (854)
T KOG0507|consen 46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKGILPLHLAAWNGNLEIVKMLLLQ---TDILNAVNIENETPLH 120 (854)
T ss_pred CccchhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccCcceEEehhhcCcchHHHHHHhc---ccCCCcccccCcCccc
Confidence 3479999999999999999999999988774443 5789999999999999999999999 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~ 167 (460)
.|+++|+.+++.+|+.+|+++ ...+..+.|+|.+|++.|..++++.|+...-. ..... ...-..++..+.+|||+
T Consensus 121 laaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~--~~~~~--~~~~~~~~~~~~~plHl 195 (854)
T KOG0507|consen 121 LAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFP--VQSSL--RVGDIKRPFPAIYPLHL 195 (854)
T ss_pred hhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccc--hhhcc--cCCCCCCCCCCcCCcch
Confidence 999999999999999999999 66778999999999999999999999998322 11111 22245677888999999
Q ss_pred HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC---hH
Q 012618 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK---HQ 244 (460)
Q Consensus 168 A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~---~~ 244 (460)
|+++|+.++++.|++.|.++|... ..-|+||.|+..|..++|++|++.|++...+|.+|+|+|.+-.... ..
T Consensus 196 aakngh~~~~~~ll~ag~din~~t-----~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ 270 (854)
T KOG0507|consen 196 AAKNGHVECMQALLEAGFDINYTT-----EDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRY 270 (854)
T ss_pred hhhcchHHHHHHHHhcCCCccccc-----ccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhh
Confidence 999999999999999999766543 2459999999999999999999999999999999999999877654 34
Q ss_pred HHHHhhCCC
Q 012618 245 ACAALLNPS 253 (460)
Q Consensus 245 ~i~~~Ll~~ 253 (460)
+++-++...
T Consensus 271 ei~ga~~~~ 279 (854)
T KOG0507|consen 271 EIAGAVKNF 279 (854)
T ss_pred hhhhhhhcc
Confidence 566555443
No 48
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.93 E-value=2.7e-26 Score=198.44 Aligned_cols=207 Identities=25% Similarity=0.312 Sum_probs=187.7
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCc
Q 012618 5 MSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQT 84 (460)
Q Consensus 5 ~~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~t 84 (460)
...+.+|.++++.|+-.|+.+.+..+|.++...+... --+.+|+.+++...+++++..+.++ .+|..|+.|+|
T Consensus 90 ~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs--~~p~s~~slsVhql~L~~~~~~~~n-----~VN~~De~GfT 162 (296)
T KOG0502|consen 90 DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVS--LMPWSPLSLSVHQLHLDVVDLLVNN-----KVNACDEFGFT 162 (296)
T ss_pred CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccc--cccCChhhHHHHHHHHHHHHHHhhc-----cccCccccCch
Confidence 3456679999999999999999999999988876553 3678999999999999999888876 67889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164 (460)
Q Consensus 85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~ 164 (460)
||+||+..|++.+|++||+.|+++ ....+...++|.+|...|..++|++|+..+.+ +|..|-+|-||
T Consensus 163 pLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vd------------VNvyDwNGgTp 229 (296)
T KOG0502|consen 163 PLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVD------------VNVYDWNGGTP 229 (296)
T ss_pred HhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC------------cceeccCCCce
Confidence 999999999999999999999998 66667888999999999999999999999988 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 012618 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYA 236 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~ 236 (460)
|-||++-++.+||+.||..|+ +.+..+..|+++|..|+..|+. +|+..+++-++.+.+|...++|+|
T Consensus 230 LlyAvrgnhvkcve~Ll~sGA----d~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 230 LLYAVRGNHVKCVESLLNSGA----DVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH 296 (296)
T ss_pred eeeeecCChHHHHHHHHhcCC----CcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence 999999999999999999999 5566778899999999999998 999999998888888888888865
No 49
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=6.4e-24 Score=231.69 Aligned_cols=164 Identities=25% Similarity=0.280 Sum_probs=152.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618 79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158 (460)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d 158 (460)
+..+.++|+.||..|+.++++.|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++ +|.+|
T Consensus 522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad------------in~~d 588 (823)
T PLN03192 522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN------------VHIRD 588 (823)
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC------------CCCcC
Confidence 445779999999999999999999999998 78889999999999999999999999999988 89999
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A 238 (460)
.+|.||||+|+..|+.+++++|++.++..+ ...+.++||+|+..|+.+++++|+++|+|+|.+|..|+||||+|
T Consensus 589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A 662 (823)
T PLN03192 589 ANGNTALWNAISAKHHKIFRILYHFASISD------PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA 662 (823)
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHhcCcccC------cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999887332 23577999999999999999999999999999999999999999
Q ss_pred HHhChHHHHHhhCCCCCCCCccc
Q 012618 239 LKYKHQACAALLNPSSAEPLVWP 261 (460)
Q Consensus 239 ~~~~~~~i~~~Ll~~ga~~~~~~ 261 (460)
+..|+.+++++|+++||++...+
T Consensus 663 ~~~g~~~iv~~Ll~~GAdv~~~~ 685 (823)
T PLN03192 663 MAEDHVDMVRLLIMNGADVDKAN 685 (823)
T ss_pred HHCCcHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999887643
No 50
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.90 E-value=8.9e-24 Score=229.12 Aligned_cols=241 Identities=23% Similarity=0.128 Sum_probs=182.2
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM-VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY 122 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 122 (460)
.++...|+.|+..|+.+.|+.+++... +.++|..|..|+|||| .|+.+++.+++++|++.|+ .+..|.||||.
T Consensus 15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~-~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~ 88 (743)
T TIGR00870 15 SDEEKAFLPAAERGDLASVYRDLEEPK-KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA 88 (743)
T ss_pred CHHHHHHHHHHHcCCHHHHHHHhcccc-ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence 356789999999999999999998633 6788999999999999 8889999999999999987 45689999999
Q ss_pred HHHcCCHHH----HHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC------
Q 012618 123 AAYYGHSDC----LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG------ 192 (460)
Q Consensus 123 A~~~g~~~i----v~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~------ 192 (460)
|+.. ..+. +..+...+...... +.........+..|.||||+|+..|+.++|++|+++|++++....
T Consensus 89 A~~~-~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~ 165 (743)
T TIGR00870 89 ISLE-YVDAVEAILLHLLAAFRKSGPL--ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK 165 (743)
T ss_pred HHhc-cHHHHHHHHHHHhhcccccCch--hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc
Confidence 9873 3333 33333333211000 000000122345799999999999999999999999998764321
Q ss_pred ----CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC---------hHHHHHhhCCCCCCCCc
Q 012618 193 ----GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK---------HQACAALLNPSSAEPLV 259 (460)
Q Consensus 193 ----~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~---------~~~i~~~Ll~~ga~~~~ 259 (460)
.....|.||||+|+..|+.+++++|+++|+|++..|..|+||||+|+..+ ...+.++++..++....
T Consensus 166 ~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~ 245 (743)
T TIGR00870 166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD 245 (743)
T ss_pred CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Confidence 11246899999999999999999999999999999999999999999886 23455666665553321
Q ss_pred ccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhc
Q 012618 260 WPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNE 296 (460)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~ 296 (460)
. .......+..+.++|+.|...++.+..+.+++.
T Consensus 246 ~---~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 246 S---KELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred h---HhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 1 001123466788999999999999999999874
No 51
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2e-23 Score=202.86 Aligned_cols=218 Identities=27% Similarity=0.323 Sum_probs=172.2
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN 92 (460)
Q Consensus 13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~ 92 (460)
-.+..|+..|+.+-|..||..|++++. .+.+|.|+||-++.-.+.+||++|+++ |+++|..|..|+||||.|+..
T Consensus 42 a~~l~A~~~~d~~ev~~ll~~ga~~~~--~n~DglTalhq~~id~~~e~v~~l~e~---ga~Vn~~d~e~wtPlhaaasc 116 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLLNRGASPNL--CNVDGLTALHQACIDDNLEMVKFLVEN---GANVNAQDNEGWTPLHAAASC 116 (527)
T ss_pred HHHHhccccccHHHHHHHhccCCCccc--cCCccchhHHHHHhcccHHHHHHHHHh---cCCccccccccCCcchhhccc
Confidence 357778899999999999999988843 457899999999999999999999999 999999999999999999999
Q ss_pred CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCC-CC-------------cccCCCccccccCC
Q 012618 93 GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS-PV-------------ANTWGFSRFVNIRD 158 (460)
Q Consensus 93 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~-~~-------------~~~~~~~~~v~~~d 158 (460)
|++.++++|+..|+++ ...+..|..|+.++...-..+++..-....... .. ..-...+...+.++
T Consensus 117 g~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~ 195 (527)
T KOG0505|consen 117 GYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH 195 (527)
T ss_pred ccHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence 9999999999999987 344456666655443222222211111110000 00 00000111267777
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A 238 (460)
..|.|+||.|+.+|..++.++|++.|. ..+.+|.+|+||||.|+..|..+++++|+++|++.+.....|.||+.+|
T Consensus 196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~----~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~ 271 (527)
T KOG0505|consen 196 ARGATALHVAAANGYTEVAALLLQAGY----SVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA 271 (527)
T ss_pred cccchHHHHHHhhhHHHHHHHHHHhcc----CcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence 779999999999999999999999999 6778889999999999999999999999999999999999999999988
Q ss_pred HH
Q 012618 239 LK 240 (460)
Q Consensus 239 ~~ 240 (460)
..
T Consensus 272 de 273 (527)
T KOG0505|consen 272 DE 273 (527)
T ss_pred hh
Confidence 65
No 52
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.89 E-value=2.1e-23 Score=193.02 Aligned_cols=160 Identities=28% Similarity=0.331 Sum_probs=146.1
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc-----CCHHHHHHHHHhcCCCCCcccCC
Q 012618 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY-----GHSDCLQALLTAARTSPVANTWG 149 (460)
Q Consensus 75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~ 149 (460)
+|.-|.+|.|+||||+.++|+++|+.||+.|...++.++..|+||+++|+.. .+.++|..|+..|.
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--------- 331 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--------- 331 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC---------
Confidence 5778899999999999999999999999999988899999999999999864 46788999998875
Q ss_pred CccccccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCC
Q 012618 150 FSRFVNIR-DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW-GADRVQP 227 (460)
Q Consensus 150 ~~~~v~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~ 227 (460)
||.+ ...|+|+|++|+.+|+.++|+.||.-|| ++|.+|.+|.|+|+.|+..|+.+||++||.. ++|+...
T Consensus 332 ----VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgA----dVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLt 403 (452)
T KOG0514|consen 332 ----VNAKASQHGQTALMLAVSHGRVDMVKALLACGA----DVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLT 403 (452)
T ss_pred ----cchhhhhhcchhhhhhhhcCcHHHHHHHHHccC----CCccccCCccHHHhhhhhhChHHHHHHHhccCcccceee
Confidence 5654 4689999999999999999999999999 6677889999999999999999999999987 7999999
Q ss_pred CCCCCCHHHHHHHhChHHHHHhhC
Q 012618 228 DAFGRIPYAIALKYKHQACAALLN 251 (460)
Q Consensus 228 d~~G~tpL~~A~~~~~~~i~~~Ll 251 (460)
|.+|-|+|.+|...|+.+|.-+|.
T Consensus 404 D~DgSTAl~IAleagh~eIa~mlY 427 (452)
T KOG0514|consen 404 DVDGSTALSIALEAGHREIAVMLY 427 (452)
T ss_pred cCCCchhhhhHHhcCchHHHHHHH
Confidence 999999999999999999998883
No 53
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.89 E-value=4.8e-23 Score=190.71 Aligned_cols=161 Identities=33% Similarity=0.412 Sum_probs=143.8
Q ss_pred CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCccccCCCCCC
Q 012618 42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN-----GKLSCVKKLIESGAFILNFDSLQG 116 (460)
Q Consensus 42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~~g 116 (460)
.|.+|+|+||||+..+|+++|+.||+.. -+++|..|+-|+||+|+|+.. .+.++|+.|..-|- ++..-...|
T Consensus 264 aDsNGNTALHYsVSHaNF~VV~~LLDSg--vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~g 340 (452)
T KOG0514|consen 264 ADSNGNTALHYAVSHANFDVVSILLDSG--VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHG 340 (452)
T ss_pred hcCCCCeeeeeeecccchHHHHHHhccC--cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhc
Confidence 3578999999999999999999999984 679999999999999999864 46789999988774 434556789
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC
Q 012618 117 RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY 196 (460)
Q Consensus 117 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~ 196 (460)
+|+|++|+.+|+.++|+.||..+++ ||.+|.+|-|+|++|+.+|+.|++++||..-. .+....|.
T Consensus 341 QTALMLAVSHGr~d~vk~LLacgAd------------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~---cd~sLtD~ 405 (452)
T KOG0514|consen 341 QTALMLAVSHGRVDMVKALLACGAD------------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS---CDISLTDV 405 (452)
T ss_pred chhhhhhhhcCcHHHHHHHHHccCC------------CccccCCccHHHhhhhhhChHHHHHHHhccCc---ccceeecC
Confidence 9999999999999999999999999 99999999999999999999999999997643 25567788
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHc
Q 012618 197 PGSTPLHFAARGGSLECIRELLAW 220 (460)
Q Consensus 197 ~g~TpLh~A~~~g~~~~v~~Ll~~ 220 (460)
+|.|+|.+|...|+.+|.-+|..+
T Consensus 406 DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 406 DGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred CCchhhhhHHhcCchHHHHHHHHH
Confidence 999999999999999999888765
No 54
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.88 E-value=3.9e-22 Score=175.77 Aligned_cols=144 Identities=22% Similarity=0.320 Sum_probs=115.2
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHH---HHHHHHhcCCCCC
Q 012618 72 YTNTDALNRYKQTPLMVAAMNGKL----SCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC---LQALLTAARTSPV 144 (460)
Q Consensus 72 ~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~i---v~~Ll~~~~~~~~ 144 (460)
+++++..+.++.++||.|++.|+. +++++|++.|+.+ +..+..|+||||+|+..|+.+. +++|++.+++
T Consensus 10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad--- 85 (166)
T PHA02743 10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD--- 85 (166)
T ss_pred chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC---
Confidence 556666777788888888888887 5666777777766 6667788888888888877554 7888888877
Q ss_pred cccCCCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 012618 145 ANTWGFSRFVNIRD-ESGATPLHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222 (460)
Q Consensus 145 ~~~~~~~~~v~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 222 (460)
++.++ ..|.||||+|+..++.+++++|++ .|+ +.+..+..|.||||+|+..++.+++++|+++|+
T Consensus 86 ---------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga 152 (166)
T PHA02743 86 ---------INARELGTGNTLLHIAASTKNYELAEWLCRQLGV----NLGAINYQHETAYHIAYKMRDRRMMEILRANGA 152 (166)
T ss_pred ---------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC----CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 78887 478889999988888888888885 687 445567788899999998888899999999999
Q ss_pred CCCCCCCCCC
Q 012618 223 DRVQPDAFGR 232 (460)
Q Consensus 223 d~~~~d~~G~ 232 (460)
+++.++..|.
T Consensus 153 ~~~~~~~~~~ 162 (166)
T PHA02743 153 VCDDPLSIGL 162 (166)
T ss_pred CCCCcccCCc
Confidence 8888887764
No 55
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.88 E-value=5.3e-23 Score=211.72 Aligned_cols=261 Identities=23% Similarity=0.225 Sum_probs=231.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc-CCCCCCcHHH
Q 012618 9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA-LNRYKQTPLM 87 (460)
Q Consensus 9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~~~g~tpL~ 87 (460)
..-+|+|..|+..|+.|+|+.|+.+|+++.. ++..|.+||.+|+-.||..+|+.||.+ .++++. .|+.+.|+|-
T Consensus 755 ~n~~t~LT~acaggh~e~vellv~rganieh--rdkkgf~plImaatagh~tvV~~llk~---ha~veaQsdrtkdt~lS 829 (2131)
T KOG4369|consen 755 PNIKTNLTSACAGGHREEVELLVVRGANIEH--RDKKGFVPLIMAATAGHITVVQDLLKA---HADVEAQSDRTKDTMLS 829 (2131)
T ss_pred ccccccccccccCccHHHHHHHHHhcccccc--cccccchhhhhhcccCchHHHHHHHhh---hhhhhhhcccccCceEE
Confidence 3457899999999999999999999999955 457899999999999999999999999 888876 4677899999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC--CCCCCCHH
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR--DESGATPL 165 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~--d~~g~t~L 165 (460)
+||..|+.++|++||..|++- ..++...+|||.+|...|..+++..|+..|.. ||.+ .+.|..||
T Consensus 830 lacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~Gse------------InSrtgSklgisPL 896 (2131)
T KOG4369|consen 830 LACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSE------------INSRTGSKLGISPL 896 (2131)
T ss_pred EecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccc------------cccccccccCcchh
Confidence 999999999999999999987 66778889999999999999999999999987 5554 36788999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHH
Q 012618 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245 (460)
Q Consensus 166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~ 245 (460)
++|..+|+.+.++.||+.|.++|..+. .+.+|+|-+|+..|..++|.+||.+.+++..+-+.|.|||+-++..|..+
T Consensus 897 mlatmngh~~at~~ll~~gsdiNaqIe---TNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvd 973 (2131)
T KOG4369|consen 897 MLATMNGHQAATLSLLQPGSDINAQIE---TNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVD 973 (2131)
T ss_pred hhhhhccccHHHHHHhcccchhccccc---cccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccc
Confidence 999999999999999999998876654 46789999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618 246 CAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI 298 (460)
Q Consensus 246 i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~ 298 (460)
+-++|+..|||.+..|.+.. ..++|..++..++...+..++++..
T Consensus 974 vg~~li~~gad~nasPvp~T--------~dtalti~a~kGh~kfv~~lln~~a 1018 (2131)
T KOG4369|consen 974 VGNLLIAAGADTNASPVPNT--------WDTALTIPANKGHTKFVPKLLNGDA 1018 (2131)
T ss_pred cchhhhhcccccccCCCCCc--------CCccceeecCCCchhhhHHhhCCcc
Confidence 99999999999887665432 2356667778888888888887543
No 56
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-21 Score=189.44 Aligned_cols=217 Identities=25% Similarity=0.229 Sum_probs=169.1
Q ss_pred HHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC
Q 012618 49 ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128 (460)
Q Consensus 49 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~ 128 (460)
.+.-|+..|.++=|+.||.. +++++..|.+|.|+||.++.-.+.+||++|+++|+++ +..|..|+||||.|+..|+
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~---ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~ 118 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNR---GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGY 118 (527)
T ss_pred HHHhccccccHHHHHHHhcc---CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhccccc
Confidence 45667788999999999999 8999999999999999999999999999999999999 7778899999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc-CC-------------HHHHHHHHHcCCccccCCCCC
Q 012618 129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ-GW-------------SECVHTLLDNGALACSSTGGN 194 (460)
Q Consensus 129 ~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~-g~-------------~~~v~~Ll~~ga~~~~~~~~~ 194 (460)
..++++|+.+|++....+..+...+-...+..+.+.+-.++.. |- ..=+...+..|. .....
T Consensus 119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~----~~d~~ 194 (527)
T KOG0505|consen 119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGA----ELDAR 194 (527)
T ss_pred HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccc----ccccc
Confidence 9999999999998433222211111111111122222222111 10 112223334666 44555
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHH
Q 012618 195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPE 273 (460)
Q Consensus 195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 273 (460)
+..|.|.||.|+.+|..++.++|+++|.+++..|.+||||||.|+.+++.++.++|+.+|++............++..+
T Consensus 195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 195 HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence 5669999999999999999999999999999999999999999999999999999999999988776666666555544
No 57
>PHA02741 hypothetical protein; Provisional
Probab=99.86 E-value=4.2e-21 Score=169.87 Aligned_cols=136 Identities=24% Similarity=0.273 Sum_probs=115.5
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCc
Q 012618 111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW----SECVHTLLDNGAL 186 (460)
Q Consensus 111 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~ 186 (460)
.++..|.||||+|+..|+.+++++|+...... .....++.+|..|.||||+|+..|+ .+++++|++.|++
T Consensus 16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad 89 (169)
T PHA02741 16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGD------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD 89 (169)
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence 45568999999999999999999886532100 0011278999999999999999998 5899999999994
Q ss_pred cccCCCCCCC-CCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCC
Q 012618 187 ACSSTGGNGY-PGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256 (460)
Q Consensus 187 ~~~~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~ 256 (460)
.+.++. .|.||||+|+..++.+++++|+. .|++++..|..|+|||++|+..++.+++++|+++++.
T Consensus 90 ----in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 90 ----INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred ----CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455554 79999999999999999999998 5999999999999999999999999999999988764
No 58
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.86 E-value=4.2e-21 Score=169.20 Aligned_cols=139 Identities=17% Similarity=0.088 Sum_probs=119.6
Q ss_pred CCccccCCCCCCChHHHHHHHcCCH----HHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHH---HH
Q 012618 105 GAFILNFDSLQGRTCLHYAAYYGHS----DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE---CV 177 (460)
Q Consensus 105 g~~~~~~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~---~v 177 (460)
++++ ...+..+.++||+|+..|+. +++++|++.+.. ++.+|..|+||||+|+..|+.+ ++
T Consensus 10 ~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~------------~~~~d~~g~t~Lh~Aa~~g~~~~~~~i 76 (166)
T PHA02743 10 NLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL------------LHRYDHHGRQCTHMVAWYDRANAVMKI 76 (166)
T ss_pred chHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh------------hhccCCCCCcHHHHHHHhCccCHHHHH
Confidence 4444 33446788999999999998 566677777766 7889999999999999998865 48
Q ss_pred HHHHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 178 HTLLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 178 ~~Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
++|+++|+ +.+.++ ..|.||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..++.+++++|+.+|+
T Consensus 77 ~~Ll~~Ga----din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga 152 (166)
T PHA02743 77 ELLVNMGA----DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA 152 (166)
T ss_pred HHHHHcCC----CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999 445566 479999999999999999999995 799999999999999999999999999999999999
Q ss_pred CCCcc
Q 012618 256 EPLVW 260 (460)
Q Consensus 256 ~~~~~ 260 (460)
+....
T Consensus 153 ~~~~~ 157 (166)
T PHA02743 153 VCDDP 157 (166)
T ss_pred CCCCc
Confidence 77643
No 59
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.85 E-value=2.2e-22 Score=207.25 Aligned_cols=280 Identities=22% Similarity=0.230 Sum_probs=221.3
Q ss_pred CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618 2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 80 (460)
|+++.- +..|.+||.+|+..|+..+|+.|+.+.+++... .+..+.|+|.+|+..|..++|++||.. |++-..++-
T Consensus 780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQ-sdrtkdt~lSlacsggr~~vvelLl~~---gankehrnv 855 (2131)
T KOG4369|consen 780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQ-SDRTKDTMLSLACSGGRTRVVELLLNA---GANKEHRNV 855 (2131)
T ss_pred cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhh-cccccCceEEEecCCCcchHHHHHHHh---hccccccch
Confidence 455554 557999999999999999999999998888554 357788999999999999999999998 888888888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCccccCC-CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccC-----------
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFD-SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW----------- 148 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~----------- 148 (460)
..+|||-+|...|.+++|..|+..|+.+.... .+.|-.||++|...||-+.++.|++.+.+.+.....
T Consensus 856 sDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~f 935 (2131)
T KOG4369|consen 856 SDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALF 935 (2131)
T ss_pred hhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccc
Confidence 88888888888888888888888887763322 345778888888888888888888877664321111
Q ss_pred -C----------CccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 012618 149 -G----------FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217 (460)
Q Consensus 149 -~----------~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~L 217 (460)
+ +...+..+-..|.|||+-++..|.+++-++||..|+|++...-- ....|+|.+++..||...|+.|
T Consensus 936 qgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp--~T~dtalti~a~kGh~kfv~~l 1013 (2131)
T KOG4369|consen 936 QGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVP--NTWDTALTIPANKGHTKFVPKL 1013 (2131)
T ss_pred cCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCC--CcCCccceeecCCCchhhhHHh
Confidence 1 11226778889999999999999999999999999988765432 2456899999999999999999
Q ss_pred HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET 297 (460)
Q Consensus 218 l~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~ 297 (460)
+...+.+..+|++|.|+|.+|+..++...+.+|+++++++.. .+....+.+-.|+.++..++++.....+
T Consensus 1014 ln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~----------qdnr~~S~~maafRKgh~~iVk~mv~~a 1083 (2131)
T KOG4369|consen 1014 LNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ----------QDNRTNSRTMAAFRKGHFAIVKKMVPPA 1083 (2131)
T ss_pred hCCccceecccCCCCcccchhccCCccccchHHhhcccChhh----------hhcccccccHHHHHhchhheeccccCch
Confidence 999999999999999999999999999999999999986543 3334445566677777777776655433
No 60
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.85 E-value=1.3e-20 Score=179.05 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=123.1
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN----RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH 121 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 121 (460)
..++||.|+..|+.+++++|+++ |+++|.++ ..|.||||+|+..++.+++++|+++|+++....+..|.||||
T Consensus 33 ~~~lL~~A~~~~~~eivk~LL~~---GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh 109 (300)
T PHA02884 33 IANILYSSIKFHYTDIIDAILKL---GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLY 109 (300)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHC---CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHH
Confidence 34678888888999999999999 99998874 589999999999999999999999999883334567899999
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618 122 YAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201 (460)
Q Consensus 122 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp 201 (460)
+|+..++.+++++|+..|++ ++.+|..|.||||+|+..++.+++.++...+ .+..+.+|
T Consensus 110 ~Aa~~~~~eivklLL~~GAd------------in~kd~~G~TpL~~A~~~~~~~~~~~~~~~~---------~~~~~~~~ 168 (300)
T PHA02884 110 ISVLHGCLKCLEILLSYGAD------------INIQTNDMVTPIELALMICNNFLAFMICDNE---------ISNFYKHP 168 (300)
T ss_pred HHHHcCCHHHHHHHHHCCCC------------CCCCCCCCCCHHHHHHHhCChhHHHHhcCCc---------ccccccCh
Confidence 99999999999999999988 7888999999999999988888876664322 23456688
Q ss_pred HHHHHhcCCHHHHHHHHHcCC
Q 012618 202 LHFAARGGSLECIRELLAWGA 222 (460)
Q Consensus 202 Lh~A~~~g~~~~v~~Ll~~ga 222 (460)
++++ ++.+++++|+.+++
T Consensus 169 ~~~~---~n~ei~~~Lish~v 186 (300)
T PHA02884 169 KKIL---INFDILKILVSHFI 186 (300)
T ss_pred hhhh---ccHHHHHHHHHHHH
Confidence 8865 36889999998876
No 61
>PHA02741 hypothetical protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=166.32 Aligned_cols=126 Identities=20% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHc------CCccccCCCCCCChHHHHHHHcCC----HHHHHHHHHhcCCCCCcccC
Q 012618 79 NRYKQTPLMVAAMNGKLSCVKKLIES------GAFILNFDSLQGRTCLHYAAYYGH----SDCLQALLTAARTSPVANTW 148 (460)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~ 148 (460)
|..|.||||+|+..|+.+++++|+.. |+++ +..|..|+||||+|+..|+ .+++++|++.+++
T Consensus 18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad------- 89 (169)
T PHA02741 18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD------- 89 (169)
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-------
Confidence 34444555555555555554444321 2332 3444445555555555544 2445555554444
Q ss_pred CCccccccCCC-CCCCHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618 149 GFSRFVNIRDE-SGATPLHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221 (460)
Q Consensus 149 ~~~~~v~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 221 (460)
++.++. .|.||||+|+..++.+++++|++ .|+ +.+..|..|.||||+|+..++.+++++|++++
T Consensus 90 -----in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~----~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~ 155 (169)
T PHA02741 90 -----INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI----DLHFCNADNKSPFELAIDNEDVAMMQILREIV 155 (169)
T ss_pred -----CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 444442 45555555555555555555554 244 23333444555555555555555555555544
No 62
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.84 E-value=8.3e-21 Score=165.50 Aligned_cols=138 Identities=21% Similarity=0.217 Sum_probs=108.6
Q ss_pred cCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCH---HHHHHHHHcCCc
Q 012618 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS---ECVHTLLDNGAL 186 (460)
Q Consensus 110 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~ga~ 186 (460)
+..|..|.||||+|+..|+. +.++...+..... ....++.+|..|.||||+|+..|+. +++++|++.|+
T Consensus 11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~-----~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga- 82 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE-----NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA- 82 (154)
T ss_pred HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch-----hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC-
Confidence 44566788888888888873 3333322211000 0011455788999999999999987 46899999999
Q ss_pred cccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618 187 ACSSTGGNG-YPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258 (460)
Q Consensus 187 ~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 258 (460)
+.+.++ ..|.||||+|+..++.+++++|+. .|++++..|..|+||||+|+..++.+++++|+.+|++..
T Consensus 83 ---din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 83 ---DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred ---CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 445565 489999999999999999999998 499999999999999999999999999999999998653
No 63
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.84 E-value=6.8e-20 Score=174.20 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=130.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccccc--CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccC-CCCCCcHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMT--SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDAL-NRYKQTPLM 87 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~--~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~~g~tpL~ 87 (460)
-.++|+.|++.|+.+++++|+++|++++... .+..|.||||+|+..++.+++++|+++ |+++|.+ +..|.||||
T Consensus 33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~---GADVN~~~~~~g~TpLh 109 (300)
T PHA02884 33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY---GADVNRYAEEAKITPLY 109 (300)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcCcccCCCCCCHHH
Confidence 3457888888899999999999999986542 245789999999999999999999999 9999986 467999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~ 167 (460)
+|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++..+... + .+..+.+|+++
T Consensus 110 ~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~ 171 (300)
T PHA02884 110 ISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDN----------------E-ISNFYKHPKKI 171 (300)
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCC----------------c-ccccccChhhh
Confidence 999999999999999999998 77888999999999999999887666421 1 45667788887
Q ss_pred HHHcCCHHHHHHHHHcCC
Q 012618 168 AARQGWSECVHTLLDNGA 185 (460)
Q Consensus 168 A~~~g~~~~v~~Ll~~ga 185 (460)
+ ++.+++++|+++++
T Consensus 172 ~---~n~ei~~~Lish~v 186 (300)
T PHA02884 172 L---INFDILKILVSHFI 186 (300)
T ss_pred h---ccHHHHHHHHHHHH
Confidence 5 46899999999987
No 64
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.83 E-value=4.1e-20 Score=161.14 Aligned_cols=132 Identities=21% Similarity=0.195 Sum_probs=83.8
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--c----cccCCCCCCChHHHHHHHcCCH---HHHHHHHHhcCCCCCcc
Q 012618 76 DALNRYKQTPLMVAAMNGKLSCVKKLIESGA--F----ILNFDSLQGRTCLHYAAYYGHS---DCLQALLTAARTSPVAN 146 (460)
Q Consensus 76 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~--~----~~~~~~~~g~t~L~~A~~~g~~---~iv~~Ll~~~~~~~~~~ 146 (460)
+..|..|.||||+|+..|+. +++++..+. + .....+..|+||||+|+..|+. +++++|++.+++
T Consensus 11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad----- 83 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD----- 83 (154)
T ss_pred HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-----
Confidence 34556677777777777663 222222211 1 1223456677777777777765 356677777766
Q ss_pred cCCCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHc-CCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 012618 147 TWGFSRFVNIRD-ESGATPLHLAARQGWSECVHTLLDN-GALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADR 224 (460)
Q Consensus 147 ~~~~~~~v~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 224 (460)
++.++ ..|.||||+|+..++.+++++|++. |+ +.+.++..|.||||+|+..|+.+++++|+++|++.
T Consensus 84 -------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~----d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 84 -------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGV----NMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred -------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC----CCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 66666 3677777777777777777777763 66 44555667777777777777777777777777765
Q ss_pred C
Q 012618 225 V 225 (460)
Q Consensus 225 ~ 225 (460)
+
T Consensus 153 ~ 153 (154)
T PHA02736 153 K 153 (154)
T ss_pred C
Confidence 4
No 65
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.79 E-value=1.4e-18 Score=145.36 Aligned_cols=143 Identities=28% Similarity=0.296 Sum_probs=122.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163 (460)
Q Consensus 84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t 163 (460)
--+.+|+..+....|+.||+..++.++.+|.+|+||||-|+++|+.+||+.|+..+++ .+.+...|+|
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn------------~~a~T~~GWT 132 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN------------KEAKTNEGWT 132 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC------------cccccccCcc
Confidence 3467888899999999999999998899999999999999999999999999999998 7888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCH-HHHHHHH-HcCCCCCCCCCCCCCHHHHHHHh
Q 012618 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL-ECIRELL-AWGADRVQPDAFGRIPYAIALKY 241 (460)
Q Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~-~~v~~Ll-~~gad~~~~d~~G~tpL~~A~~~ 241 (460)
|||.|+..++.+++-+||.+|++|+. ......||||+|+...+. ..+++|+ ..++++-..+..+.||+.+|.+.
T Consensus 133 PLhSAckWnN~~va~~LLqhgaDVnA----~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT 208 (228)
T KOG0512|consen 133 PLHSACKWNNFEVAGRLLQHGADVNA----QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT 208 (228)
T ss_pred chhhhhcccchhHHHHHHhccCcccc----cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence 99999999999999999999996654 444668999999877664 4556655 34788888899999999999765
Q ss_pred C
Q 012618 242 K 242 (460)
Q Consensus 242 ~ 242 (460)
+
T Consensus 209 ~ 209 (228)
T KOG0512|consen 209 S 209 (228)
T ss_pred h
Confidence 4
No 66
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.77 E-value=5.5e-18 Score=141.88 Aligned_cols=143 Identities=24% Similarity=0.269 Sum_probs=107.1
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC
Q 012618 14 ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG 93 (460)
Q Consensus 14 ~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g 93 (460)
.+.+|+..+.+..|+.||+..++..+. ++.+|.||||.|+.+|+.+||+.|+.. |++++.+...|+||||-||.-+
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNt-rD~D~YTpLHRAaYn~h~div~~ll~~---gAn~~a~T~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNT-RDEDEYTPLHRAAYNGHLDIVHELLLS---GANKEAKTNEGWTPLHSACKWN 141 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccc-cccccccHHHHHHhcCchHHHHHHHHc---cCCcccccccCccchhhhhccc
Confidence 467788888888888888888776543 457788888888888888888888888 8888888888888888888888
Q ss_pred CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCH-HHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcC
Q 012618 94 KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS-DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172 (460)
Q Consensus 94 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g 172 (460)
+.+++-+||++|+++ +.......||||+|+...+. ..+++|+...... ....+..+.||+.+|-+.+
T Consensus 142 N~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~-----------pg~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 142 NFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH-----------PGLKNNLEETAFDIARRTS 209 (228)
T ss_pred chhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccC-----------hhhhcCccchHHHHHHHhh
Confidence 888888888888887 55556778888888866554 4455555433221 3445667778888877654
No 67
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.76 E-value=9.3e-18 Score=171.10 Aligned_cols=195 Identities=26% Similarity=0.289 Sum_probs=157.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCC-------CcccccCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCCcc--CC
Q 012618 12 ESALFVAVENGDLQMIEAMVEADP-------TVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNTDA--LN 79 (460)
Q Consensus 12 ~t~L~~Aa~~g~~~~vk~Ll~~~~-------~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~--~~ 79 (460)
+.+++.|...+.++.+..|+..+. +.....+..-|.|.||.|..+ ++.++++.||+.++.-++--. ..
T Consensus 102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee 181 (782)
T KOG3676|consen 102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE 181 (782)
T ss_pred hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence 368899999999999998887663 111122245689999999984 456999999997543222111 23
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCcccc--------CCC--------------CCCChHHHHHHHcCCHHHHHHHHH
Q 012618 80 RYKQTPLMVAAMNGKLSCVKKLIESGAFILN--------FDS--------------LQGRTCLHYAAYYGHSDCLQALLT 137 (460)
Q Consensus 80 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~--------~~~--------------~~g~t~L~~A~~~g~~~iv~~Ll~ 137 (460)
..|+||||+|+.+.+.++|++|++.|||+.. ..| ..|..||.+||..++.+++++|++
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 6799999999999999999999999998721 111 236789999999999999999999
Q ss_pred hcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 012618 138 AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217 (460)
Q Consensus 138 ~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~L 217 (460)
++++ ++.+|..|+|.||..+..-..++..++|++|++ ......|..|-|||.+|++-|+.++.+.+
T Consensus 262 ~gAd------------~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~~i 327 (782)
T KOG3676|consen 262 HGAD------------PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQHI 327 (782)
T ss_pred cCCC------------CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHHHH
Confidence 9998 899999999999999999888999999999995 33667788899999999999999999999
Q ss_pred HHc
Q 012618 218 LAW 220 (460)
Q Consensus 218 l~~ 220 (460)
++.
T Consensus 328 le~ 330 (782)
T KOG3676|consen 328 LER 330 (782)
T ss_pred HHh
Confidence 987
No 68
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-18 Score=156.76 Aligned_cols=117 Identities=33% Similarity=0.418 Sum_probs=84.4
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCc
Q 012618 72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS 151 (460)
Q Consensus 72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 151 (460)
..+.|.-|..|++|||+|++.|+..+++.|+.+|+.+ +..+....||||+|+..||.++|+.|++..++
T Consensus 24 ehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kad---------- 92 (448)
T KOG0195|consen 24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD---------- 92 (448)
T ss_pred ccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhcc----------
Confidence 4566666777777777777777777777777777766 66666667777777777777777777777666
Q ss_pred cccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618 152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205 (460)
Q Consensus 152 ~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A 205 (460)
+|..+..|+||||||+..|...+.+-|+..|+ .++..++.|.|||..|
T Consensus 93 --vnavnehgntplhyacfwgydqiaedli~~ga----~v~icnk~g~tpldka 140 (448)
T KOG0195|consen 93 --VNAVNEHGNTPLHYACFWGYDQIAEDLISCGA----AVNICNKKGMTPLDKA 140 (448)
T ss_pred --cchhhccCCCchhhhhhhcHHHHHHHHHhccc----eeeecccCCCCchhhh
Confidence 77777777777777777777777777777777 4455566677777665
No 69
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-17 Score=149.99 Aligned_cols=153 Identities=26% Similarity=0.349 Sum_probs=109.4
Q ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 012618 19 VENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCV 98 (460)
Q Consensus 19 a~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 98 (460)
++.|+.--|+..|+.-...++. .+..|.+|||+|++.|+..+|++||.+ |+.+|..|.-..||||+|+.+|+-++|
T Consensus 8 cregna~qvrlwld~tehdln~-gddhgfsplhwaakegh~aivemll~r---garvn~tnmgddtplhlaaahghrdiv 83 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLSR---GARVNSTNMGDDTPLHLAAAHGHRDIV 83 (448)
T ss_pred hhcCCeEEEEEEecCccccccc-ccccCcchhhhhhhcccHHHHHHHHhc---ccccccccCCCCcchhhhhhcccHHHH
Confidence 3444444444444433332222 345788888888888888888888888 888888887778888888888888888
Q ss_pred HHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHH
Q 012618 99 KKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVH 178 (460)
Q Consensus 99 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~ 178 (460)
+.|++..+++ +..+..|.||||||+..|...+.+-|+..|+. ++..+++|.|||..|--.-..-+.+
T Consensus 84 qkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~------------v~icnk~g~tpldkakp~l~~~l~e 150 (448)
T KOG0195|consen 84 QKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAA------------VNICNKKGMTPLDKAKPMLKNTLLE 150 (448)
T ss_pred HHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccce------------eeecccCCCCchhhhchHHHHHHHH
Confidence 8888888887 77778888888888888888888888888887 7888888888887765332222333
Q ss_pred HHHHcCCccc
Q 012618 179 TLLDNGALAC 188 (460)
Q Consensus 179 ~Ll~~ga~~~ 188 (460)
+--++|-.++
T Consensus 151 ~aek~gq~~n 160 (448)
T KOG0195|consen 151 IAEKHGQSPN 160 (448)
T ss_pred HHHHhCCCCC
Confidence 3334555433
No 70
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.73 E-value=3.5e-17 Score=166.95 Aligned_cols=199 Identities=23% Similarity=0.206 Sum_probs=163.2
Q ss_pred cHHHHHHHcCcHHHHHHHHhccC------CCCCCccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCcccc----CCCC
Q 012618 48 SALHLAAAYGQIEVLSMLLDQFF------LYTNTDALNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILN----FDSL 114 (460)
Q Consensus 48 t~Lh~A~~~g~~~iv~~Ll~~~~------~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~----~~~~ 114 (460)
.++..|...+..+.+..|+.... ..-+++.+...|.|.||.|..+ ++.++++.|++.-+.+++ -...
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY 182 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY 182 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence 67888888888888888876511 0145666777899999999984 456899999987664322 2235
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC--------------CCCCCCHHHHHHHcCCHHHHHHH
Q 012618 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR--------------DESGATPLHLAARQGWSECVHTL 180 (460)
Q Consensus 115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~--------------d~~g~t~L~~A~~~g~~~~v~~L 180 (460)
.|+||||+|+.+.+.++|++|++.|++....-.- .+.... -..|+.||.+||..++.+++++|
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G---~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL 259 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACG---AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL 259 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc---cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence 7999999999999999999999999984321110 001111 24688999999999999999999
Q ss_pred HHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhChHHHHHhhCCC
Q 012618 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD--RVQPDAFGRIPYAIALKYKHQACAALLNPS 253 (460)
Q Consensus 181 l~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ 253 (460)
+++|| +++.+|..|+|.||+.+..-..++..++|++|++ ...+|..|.|||.+|++.|+.+|.+.+++.
T Consensus 260 l~~gA----d~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 260 LAHGA----DPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred HhcCC----CCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 99999 7788999999999999999999999999999999 888999999999999999999999999887
No 71
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.72 E-value=1.8e-16 Score=131.84 Aligned_cols=124 Identities=43% Similarity=0.614 Sum_probs=112.6
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCC
Q 012618 112 DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191 (460)
Q Consensus 112 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 191 (460)
.+..|.||||+|+..++.+++++|++.+.. .+..+..|.||||+|+..+..+++++|++.|+ ..
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~------------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~----~~ 66 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD------------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA----DV 66 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----Cc
Confidence 346799999999999999999999999876 57888999999999999999999999999997 44
Q ss_pred CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhC
Q 012618 192 GGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251 (460)
Q Consensus 192 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll 251 (460)
+..+..|.||+|+|+..++.+++++|+++|.+++..|..|.||+++|+..++.+++++|+
T Consensus 67 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 67 NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 555678899999999999999999999999999999999999999999999999999885
No 72
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.71 E-value=6.1e-17 Score=127.23 Aligned_cols=63 Identities=44% Similarity=0.609 Sum_probs=29.9
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 012618 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227 (460)
Q Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 227 (460)
|.||||+|+..|+.+++++|+++|+ +.+.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGA----DINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIR 88 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTT----CTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcc----cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 4445555555555555555555554 22333344555555555555555555555555554443
No 73
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.71 E-value=7.2e-17 Score=126.81 Aligned_cols=85 Identities=33% Similarity=0.527 Sum_probs=76.3
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCC
Q 012618 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGK 94 (460)
Q Consensus 15 L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 94 (460)
||+|++.|+++++++|++.+.++.. |.||||+|+.+|+.+++++|++. |++++..|..|+||||+|+.+|+
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~ 71 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLEN---GADINSQDKNGNTALHYAAENGN 71 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHT---TTCTT-BSTTSSBHHHHHHHTTH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHh---cccccccCCCCCCHHHHHHHcCC
Confidence 7899999999999999998877733 67899999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHcCCcc
Q 012618 95 LSCVKKLIESGAFI 108 (460)
Q Consensus 95 ~~~v~~Ll~~g~~~ 108 (460)
.+++++|+++|+++
T Consensus 72 ~~~~~~Ll~~g~~~ 85 (89)
T PF12796_consen 72 LEIVKLLLEHGADV 85 (89)
T ss_dssp HHHHHHHHHTTT-T
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999887
No 74
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.70 E-value=4.3e-16 Score=129.56 Aligned_cols=122 Identities=46% Similarity=0.657 Sum_probs=70.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618 79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158 (460)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d 158 (460)
|.+|.||||+|+..++.+++++|++.+.+. ...+..|.||||+|+..++.+++++|++.+.. ++..+
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~------------~~~~~ 70 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD------------VNARD 70 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------------ccccC
Confidence 344556666666666666666666555544 34444555666666666666666666655543 44555
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~L 217 (460)
..+.||+|+|+..++.+++++|+++|. ..+..+..+.|||++|+..++.+++++|
T Consensus 71 ~~~~~~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 71 KDGNTPLHLAARNGNLDVVKLLLKHGA----DVNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCC----CCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 556666666666666666666666554 3333445555666666666666666655
No 75
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.63 E-value=2.5e-15 Score=112.79 Aligned_cols=104 Identities=29% Similarity=0.509 Sum_probs=92.5
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHH
Q 012618 12 ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAM 91 (460)
Q Consensus 12 ~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~ 91 (460)
+-.+.+++++|.++-|+..+..|.+++.. ++|++|||+|+-+|+++++++|+.. |++++.+|++|-|||..|+.
T Consensus 3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~---~ggR~plhyAAD~GQl~ilefli~i---GA~i~~kDKygITPLLsAvw 76 (117)
T KOG4214|consen 3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI---YGGRTPLHYAADYGQLSILEFLISI---GANIQDKDKYGITPLLSAVW 76 (117)
T ss_pred chhHhhhhccCcHHHHHHHHHccccHHHH---hCCcccchHhhhcchHHHHHHHHHh---ccccCCccccCCcHHHHHHH
Confidence 35689999999999999999999777553 5899999999999999999999999 99999999999999999999
Q ss_pred cCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618 92 NGKLSCVKKLIESGAFILNFDSLQGRTCLHY 122 (460)
Q Consensus 92 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 122 (460)
.||.++|++||..|++- .....+|.+.+..
T Consensus 77 EGH~~cVklLL~~GAdr-t~~~PdG~~~~ea 106 (117)
T KOG4214|consen 77 EGHRDCVKLLLQNGADR-TIHAPDGTALIEA 106 (117)
T ss_pred HhhHHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence 99999999999999986 4455567666543
No 76
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.58 E-value=1.1e-13 Score=127.59 Aligned_cols=131 Identities=38% Similarity=0.464 Sum_probs=119.1
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC-----HHHHHHHHHhcC--CCCCccc
Q 012618 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH-----SDCLQALLTAAR--TSPVANT 147 (460)
Q Consensus 75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~~~--~~~~~~~ 147 (460)
....+..+.+++|.++..+..+++++|+..|+++ +..+..|.||||+|+..++ .+++++|++.++ ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~----- 139 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV----- 139 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC-----
Confidence 3445667899999999999999999999999999 9999999999999999999 999999999998 32
Q ss_pred CCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618 148 WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221 (460)
Q Consensus 148 ~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 221 (460)
.+.+|..|.||||+|+..|+.+++++|++.|+ .....+..|.|+|++|+..++.++++.|+..+
T Consensus 140 ------~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 140 ------NNLRDEDGNTPLHWAALNGDADIVELLLEAGA----DPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred ------ccccCCCCCchhHHHHHcCchHHHHHHHhcCC----CCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 67779999999999999999999999999999 55556788999999999999999999999976
No 77
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.57 E-value=5.7e-14 Score=129.39 Aligned_cols=127 Identities=36% Similarity=0.500 Sum_probs=120.1
Q ss_pred CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC--ccccCCCCC
Q 012618 43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGK-----LSCVKKLIESGA--FILNFDSLQ 115 (460)
Q Consensus 43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~g~--~~~~~~~~~ 115 (460)
+..+.+++|.++..+..+++++|+.. +++++.++..|.||||+|+..++ .+++++|++.|+ ++....+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~ 146 (235)
T COG0666 70 DLDGRLPLHSAASKGDDKIVKLLLAS---GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED 146 (235)
T ss_pred CccccCHHHHHHHcCcHHHHHHHHHc---CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence 34577999999999999999999999 99999999999999999999999 999999999999 676888999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 012618 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG 184 (460)
Q Consensus 116 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (460)
|.||||+|+..|+.+++++|++.+++ ++.++..|.|++++|+..++.++++.|++.+
T Consensus 147 g~tpl~~A~~~~~~~~~~~ll~~~~~------------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 147 GNTPLHWAALNGDADIVELLLEAGAD------------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCchhHHHHHcCchHHHHHHHhcCCC------------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 99999999999999999999999988 7888999999999999999999999999976
No 78
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.56 E-value=2.6e-14 Score=107.36 Aligned_cols=101 Identities=32% Similarity=0.483 Sum_probs=72.0
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164 (460)
Q Consensus 85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~ 164 (460)
-++|++++|.++-|+..+..|.++.... .|++|||||+.+|..+++++|+..|++ ++.+|++|-||
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~--ggR~plhyAAD~GQl~ilefli~iGA~------------i~~kDKygITP 70 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY--GGRTPLHYAADYGQLSILEFLISIGAN------------IQDKDKYGITP 70 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh--CCcccchHhhhcchHHHHHHHHHhccc------------cCCccccCCcH
Confidence 4567777788877777777776663333 677888888888888888888887777 77777788888
Q ss_pred HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh 203 (460)
|..|+..|+.++|++||.+|+ +......+|.+.+.
T Consensus 71 LLsAvwEGH~~cVklLL~~GA----drt~~~PdG~~~~e 105 (117)
T KOG4214|consen 71 LLSAVWEGHRDCVKLLLQNGA----DRTIHAPDGTALIE 105 (117)
T ss_pred HHHHHHHhhHHHHHHHHHcCc----ccceeCCCchhHHh
Confidence 877887788888888887777 33333444554443
No 79
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.47 E-value=3.1e-13 Score=122.25 Aligned_cols=123 Identities=33% Similarity=0.337 Sum_probs=110.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN 194 (460)
Q Consensus 115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~ 194 (460)
.-..||.-++..|..+....||+.-.. +|.+|..|.++|..|+..|+.++|++||+.|+|+|....
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh-- 76 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLSTVRQ------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH-- 76 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHHHhhh------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc--
Confidence 346789999999999999999987554 899999999999999999999999999999998876543
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCC
Q 012618 195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNP 252 (460)
Q Consensus 195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~ 252 (460)
..+.||||+|+.+|+.++.++|++.|+.+...|.-|+|+-..|+.-|+.++|..+..
T Consensus 77 -g~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 77 -GTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred -cccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence 457799999999999999999999999999999999999999999999988877633
No 80
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.43 E-value=8.9e-13 Score=119.27 Aligned_cols=118 Identities=28% Similarity=0.284 Sum_probs=61.6
Q ss_pred cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127 (460)
Q Consensus 48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g 127 (460)
+||.-++..|+.+-+..||.. --++|.+|..|.|+|..|+..|+.+++++||+.|+|++..+...++||||+|+..|
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~---vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG 90 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLST---VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG 90 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHH---hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence 455555555555555555543 33345555555555555555555555555555555554444445555555555555
Q ss_pred CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 012618 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180 (460)
Q Consensus 128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~L 180 (460)
+.++.++|++.|+. ....+.-|+|+-.+|+.-|+-++|.++
T Consensus 91 n~dvcrllldaGa~------------~~~vNsvgrTAaqmAAFVG~H~CV~iI 131 (396)
T KOG1710|consen 91 NQDVCRLLLDAGAR------------MYLVNSVGRTAAQMAAFVGHHECVAII 131 (396)
T ss_pred CchHHHHHHhccCc------------cccccchhhhHHHHHHHhcchHHHHHH
Confidence 55555555555554 344444555555555555555544443
No 81
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=7.8e-13 Score=128.42 Aligned_cols=122 Identities=24% Similarity=0.275 Sum_probs=104.6
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN 92 (460)
Q Consensus 13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~ 92 (460)
-.|.-|+..|.+|+|+.++..-.+.. .-+..|.|+||-|+-.||++||++||+. |+++|..|.+||||||.|+..
T Consensus 552 aLLLDaaLeGEldlVq~~i~ev~DpS--qpNdEGITaLHNAiCaghyeIVkFLi~~---ganVNa~DSdGWTPLHCAASC 626 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRIIYEVTDPS--QPNDEGITALHNAICAGHYEIVKFLIEF---GANVNAADSDGWTPLHCAASC 626 (752)
T ss_pred HHHHhhhhcchHHHHHHHHHhhcCCC--CCCccchhHHhhhhhcchhHHHHHHHhc---CCcccCccCCCCchhhhhhhc
Confidence 35777999999999999998765552 2245799999999999999999999999 999999999999999999999
Q ss_pred CCHHHHHHHHHcCCccccCCCCCCChHHHHHH--HcCCHHHHHHHHHhc
Q 012618 93 GKLSCVKKLIESGAFILNFDSLQGRTCLHYAA--YYGHSDCLQALLTAA 139 (460)
Q Consensus 93 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~~ 139 (460)
+++.+.+.|++.|+.+....-.++.|+..-.- ..|...+.+||..-.
T Consensus 627 Nnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vq 675 (752)
T KOG0515|consen 627 NNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQ 675 (752)
T ss_pred CchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHH
Confidence 99999999999999987777778888876543 467888999997643
No 82
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.41 E-value=1.9e-13 Score=97.00 Aligned_cols=55 Identities=44% Similarity=0.590 Sum_probs=32.8
Q ss_pred HHHcC-CccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618 180 LLDNG-ALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 180 Ll~~g-a~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A 238 (460)
||++| + +.+.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus 1 LL~~~~~----~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPA----DVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T------TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcC----CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 56777 4 6678889999999999999999999999999999999999999999987
No 83
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.40 E-value=3.8e-13 Score=94.78 Aligned_cols=54 Identities=43% Similarity=0.571 Sum_probs=38.5
Q ss_pred CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhC
Q 012618 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251 (460)
Q Consensus 198 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll 251 (460)
|+||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+.+|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 567888888888888888888888888888888888888888888888887774
No 84
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.39 E-value=1.9e-12 Score=137.92 Aligned_cols=106 Identities=31% Similarity=0.345 Sum_probs=97.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCC
Q 012618 118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP 197 (460)
Q Consensus 118 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~ 197 (460)
+.|+.|+..|+.+++++|++.+++ +|.+|..|.||||+|+..|+.+++++|+++|+ +.+..|..
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gad------------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga----dvn~~d~~ 147 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGAD------------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGA----DPTLLDKD 147 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC------------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC----CCCCCCCC
Confidence 458999999999999999999988 89999999999999999999999999999999 55677889
Q ss_pred CChHHHHHHhcCCHHHHHHHHHc-------CCCCCCCCCCCCCHHHHHH
Q 012618 198 GSTPLHFAARGGSLECIRELLAW-------GADRVQPDAFGRIPYAIAL 239 (460)
Q Consensus 198 g~TpLh~A~~~g~~~~v~~Ll~~-------gad~~~~d~~G~tpL~~A~ 239 (460)
|.||||+|+..|+.+++++|+++ |++++..+..|.+|+..+.
T Consensus 148 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 148 GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 99999999999999999999999 8999888888888876554
No 85
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.38 E-value=1.1e-12 Score=92.35 Aligned_cols=54 Identities=35% Similarity=0.539 Sum_probs=32.1
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLI 102 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 102 (460)
|.||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~---~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEH---GADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHT---TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 45666666666666666666666 6666666666666666666666666666664
No 86
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.36 E-value=3.5e-12 Score=135.91 Aligned_cols=86 Identities=28% Similarity=0.301 Sum_probs=82.5
Q ss_pred HHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC
Q 012618 49 ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128 (460)
Q Consensus 49 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~ 128 (460)
.|+.|+..|+.+++++|++. |+++|.+|..|.||||+|+.+|+.+++++|++.|+++ +..|..|.||||+|+..|+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~---Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~ 160 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTG---GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF 160 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence 58899999999999999999 9999999999999999999999999999999999998 7888999999999999999
Q ss_pred HHHHHHHHHh
Q 012618 129 SDCLQALLTA 138 (460)
Q Consensus 129 ~~iv~~Ll~~ 138 (460)
.+++++|+++
T Consensus 161 ~~iv~~Ll~~ 170 (664)
T PTZ00322 161 REVVQLLSRH 170 (664)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 87
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=6.7e-12 Score=122.02 Aligned_cols=122 Identities=24% Similarity=0.243 Sum_probs=104.7
Q ss_pred ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126 (460)
Q Consensus 47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 126 (460)
.-.|.-|+..|-+++|+..+.. -.|+...|..|.|+||-|+-.||.+||++||++|+++ +..|.+||||||.|+..
T Consensus 551 LaLLLDaaLeGEldlVq~~i~e---v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASC 626 (752)
T KOG0515|consen 551 LALLLDAALEGELDLVQRIIYE---VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASC 626 (752)
T ss_pred HHHHHhhhhcchHHHHHHHHHh---hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhc
Confidence 3456778899999999999998 7788888999999999999999999999999999999 88889999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH--HcCCHHHHHHHHHc
Q 012618 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA--RQGWSECVHTLLDN 183 (460)
Q Consensus 127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~ 183 (460)
++..+++.|++.|+.. +-..-.++.|+..-+- +-|..+|.+||...
T Consensus 627 Nnv~~ckqLVe~Gaav-----------fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v 674 (752)
T KOG0515|consen 627 NNVPMCKQLVESGAAV-----------FASTLSDMETAAEKCEEMEEGYDQCSQYLYGV 674 (752)
T ss_pred CchHHHHHHHhccceE-----------EeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence 9999999999999873 2333456777776653 45788899998743
No 88
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.29 E-value=2.9e-12 Score=90.86 Aligned_cols=50 Identities=38% Similarity=0.531 Sum_probs=19.3
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 73 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
.+++..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence 455555555555555555555555555555555555 55555555555554
No 89
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-11 Score=109.17 Aligned_cols=77 Identities=21% Similarity=0.454 Sum_probs=60.5
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee--cCCc---cccCC
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI--INSA---TELDI 393 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~--~~~~---~~~~~ 393 (460)
...-.|-||+|...++++..|||+|||.|+-+| .+..+....||+|+..|+.--++++ +... ++..+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqW--------l~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~~ 116 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQW--------LQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPSDPRKK 116 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHH--------HhhcCCCeeCCccccccccceEEeeeccCCCCCCCcccc
Confidence 345569999999999999999999999999999 4455666899999999988877777 3332 22223
Q ss_pred -CCCCCccccC
Q 012618 394 -SPSKPRISRK 403 (460)
Q Consensus 394 -~~~~~~~~~~ 403 (460)
.||||..+|+
T Consensus 117 ~vP~RP~~~R~ 127 (230)
T KOG0823|consen 117 DVPPRPAGQRY 127 (230)
T ss_pred cCCCCCCCccc
Confidence 7888887773
No 90
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.18 E-value=1.6e-11 Score=84.76 Aligned_cols=47 Identities=40% Similarity=0.903 Sum_probs=40.2
Q ss_pred ccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 322 ELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
..|.||++...++++.||||. +|..|+..+... ...||+||++|+++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKR-----------KKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-----------TSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhccc-----------CCCCCcCChhhcCC
Confidence 569999999999999999999 899999999553 38899999999874
No 91
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.96 E-value=1.9e-09 Score=93.94 Aligned_cols=65 Identities=22% Similarity=0.492 Sum_probs=48.0
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCc-----ccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDI-----ITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~-----~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
....|.||++...+.+..+|||.||+.|+..|........ .........||+||..|...-.+++
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 4567999999999999999999999999999854321110 0112345789999999976555544
No 92
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.6e-10 Score=103.78 Aligned_cols=59 Identities=27% Similarity=0.630 Sum_probs=49.8
Q ss_pred CCCCCccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecC
Q 012618 317 EASDVELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN 386 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~ 386 (460)
+......|+||++..++++++||+|.+ |..|+..+- -....||+||++|..++.++...
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-----------~q~n~CPICRqpi~~ll~i~~~~ 345 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-----------YQTNNCPICRQPIEELLEIYVNK 345 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-----------HhhcCCCccccchHhhheecccc
Confidence 334567899999999999999999998 999999882 12256999999999999998743
No 93
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.2e-10 Score=76.21 Aligned_cols=51 Identities=31% Similarity=0.768 Sum_probs=43.5
Q ss_pred ccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 322 ELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
.+|.||++.+.+.+..-|||++ |..|..++. ....-.||+||.+|..+++-
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~----------~~~~g~CPiCRapi~dvIkT 59 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLK----------KALHGCCPICRAPIKDVIKT 59 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHH----------HccCCcCcchhhHHHHHHHh
Confidence 5699999999999999999987 999999982 22347899999999887754
No 94
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.4e-09 Score=99.09 Aligned_cols=47 Identities=36% Similarity=0.935 Sum_probs=42.2
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.+|++...++...||||.|||.|...||... ..||+||.+..-
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-----------~eCPlCR~~~~p 285 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-----------AECPLCREKFQP 285 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-----------cCCCcccccCCC
Confidence 35799999999999999999999999999998776 669999998743
No 95
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.83 E-value=8.1e-09 Score=100.15 Aligned_cols=95 Identities=34% Similarity=0.367 Sum_probs=83.4
Q ss_pred cccCCCCCCCH------HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 012618 154 VNIRDESGATP------LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227 (460)
Q Consensus 154 v~~~d~~g~t~------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 227 (460)
...+|.+|.+. ||-.++.|+.++.-.||..||++|.... ..|.||||.|++.|+..-+++|+-+|||++..
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hp---ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~ 196 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHP---EKGNTPLHVAAKAGQILQAELLAVYGADPGAQ 196 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCc---ccCCchhHHHHhccchhhhhHHhhccCCCCCC
Confidence 34567777665 8999999999999999999997765443 45899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhChHHHHHhhC
Q 012618 228 DAFGRIPYAIALKYKHQACAALLN 251 (460)
Q Consensus 228 d~~G~tpL~~A~~~~~~~i~~~Ll 251 (460)
|.+|.||+.+|...||.++++-|+
T Consensus 197 d~~GmtP~~~AR~~gH~~laeRl~ 220 (669)
T KOG0818|consen 197 DSSGMTPVDYARQGGHHELAERLV 220 (669)
T ss_pred CCCCCcHHHHHHhcCchHHHHHHH
Confidence 999999999999999988877653
No 96
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.80 E-value=4.9e-09 Score=101.24 Aligned_cols=90 Identities=31% Similarity=0.419 Sum_probs=54.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA 90 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~ 90 (460)
+...+++|++.|++..++.+.-.|.++ ...+++.+|+||.||..|+++++++||+.+ +.+++.+|..|+|||.-|.
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l~g~D~--~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~--kv~~~~kDRw~rtPlDdA~ 581 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFALQGMDL--ETKDYDDRTALHVAAAEGHVEVVKFLLNAC--KVDPDPKDRWGRTPLDDAK 581 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHHhcccc--cccccccchhheeecccCceeHHHHHHHHH--cCCCChhhccCCCcchHhH
Confidence 344566666666666666666666665 233455566666666666666666666654 5556666666666666666
Q ss_pred HcCCHHHHHHHHHc
Q 012618 91 MNGKLSCVKKLIES 104 (460)
Q Consensus 91 ~~g~~~~v~~Ll~~ 104 (460)
..+|.+++++|-+.
T Consensus 582 ~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 582 HFKHKEVVKLLEEA 595 (622)
T ss_pred hcCcHHHHHHHHHH
Confidence 66666666665543
No 97
>PF13606 Ank_3: Ankyrin repeat
Probab=98.78 E-value=7.5e-09 Score=62.78 Aligned_cols=29 Identities=48% Similarity=0.762 Sum_probs=23.0
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618 197 PGSTPLHFAARGGSLECIRELLAWGADRV 225 (460)
Q Consensus 197 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 225 (460)
+|+||||+|++.|+.++|++|+++|+|+|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36788888888888888888888888776
No 98
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.75 E-value=2.8e-08 Score=97.87 Aligned_cols=96 Identities=28% Similarity=0.279 Sum_probs=55.8
Q ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 012618 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI 233 (460)
Q Consensus 154 v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~t 233 (460)
+-.++.+..+.||+|+..|+-++|+|+|++|..- ..+..|..|.|+||-|+..++-.+.++|++.|+.+-..|..|.|
T Consensus 892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e--lld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~t 969 (1004)
T KOG0782|consen 892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE--LLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKT 969 (1004)
T ss_pred eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH--HHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCC
Confidence 4445555556666666666666666666655421 22333455666666666666666666666666666666666666
Q ss_pred HHHHHHHhChHHHHHhhC
Q 012618 234 PYAIALKYKHQACAALLN 251 (460)
Q Consensus 234 pL~~A~~~~~~~i~~~Ll 251 (460)
|-.-|-+.+..+++.+|-
T Consensus 970 p~eraqqa~d~dlaayle 987 (1004)
T KOG0782|consen 970 PQERAQQAGDPDLAAYLE 987 (1004)
T ss_pred hHHHHHhcCCchHHHHHh
Confidence 666666666666666653
No 99
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.73 E-value=1.1e-08 Score=98.73 Aligned_cols=95 Identities=26% Similarity=0.368 Sum_probs=86.9
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCH
Q 012618 156 IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW-GADRVQPDAFGRIP 234 (460)
Q Consensus 156 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~tp 234 (460)
.++.++...+++|+..|....++.+.-.|. +...+|++.+|+||.|+..|+.+++++|++. +.|++.+|..|+||
T Consensus 501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~----D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP 576 (622)
T KOG0506|consen 501 PRENDTVINVMYAAKNGDLSALRRFALQGM----DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP 576 (622)
T ss_pred cccccchhhhhhhhhcCCHHHHHHHHHhcc----cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence 455677789999999999999999999998 6778899999999999999999999999976 89999999999999
Q ss_pred HHHHHHhChHHHHHhhCCCC
Q 012618 235 YAIALKYKHQACAALLNPSS 254 (460)
Q Consensus 235 L~~A~~~~~~~i~~~Ll~~g 254 (460)
|.-|...+|.+++++|-+.-
T Consensus 577 lDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 577 LDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred chHhHhcCcHHHHHHHHHHh
Confidence 99999999999999996543
No 100
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.72 E-value=1.8e-08 Score=62.90 Aligned_cols=33 Identities=42% Similarity=0.659 Sum_probs=28.5
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 012618 197 PGSTPLHFAARGGSLECIRELLAWGADRVQPDA 229 (460)
Q Consensus 197 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 229 (460)
+|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 478999999999999999999999999988763
No 101
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.4e-09 Score=98.54 Aligned_cols=47 Identities=32% Similarity=0.794 Sum_probs=43.2
Q ss_pred CccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 321 VELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
..+|.||+|.+++.+|++|||.+ |.+|..++ ..|||||+.|.+++.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm---------------~eCPICRqyi~rvvri 347 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM---------------NECPICRQYIVRVVRI 347 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc---------------ccCchHHHHHHHHHhh
Confidence 57899999999999999999988 99999777 6899999999988765
No 102
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.69 E-value=1.1e-08 Score=104.72 Aligned_cols=84 Identities=29% Similarity=0.350 Sum_probs=77.0
Q ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232 (460)
Q Consensus 154 v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~ 232 (460)
.|..|..|+|+||+|+..+..+++++||.+|++++ .+| ..|+||||-|+..|+.+++-.||.+|+.+...|++|.
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~----vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegl 120 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVF----VQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGL 120 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceee----eccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCC
Confidence 78899999999999999999999999999999554 333 4699999999999999999999999999999999999
Q ss_pred CHHHHHHHh
Q 012618 233 IPYAIALKY 241 (460)
Q Consensus 233 tpL~~A~~~ 241 (460)
+||+.-.+-
T Consensus 121 splq~~~r~ 129 (1267)
T KOG0783|consen 121 SPLQFLSRV 129 (1267)
T ss_pred CHHHHHhhc
Confidence 999987763
No 103
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.66 E-value=2.5e-08 Score=91.02 Aligned_cols=54 Identities=26% Similarity=0.652 Sum_probs=43.6
Q ss_pred CCccCcccccCCCc--------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCT--------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~--------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
....|.||++.... .+..+|||.||..|...|.... ..||+||.++..+++.++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-----------~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-----------NTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-----------CCCCCCCCEeeEEeeeee
Confidence 45679999997554 2456899999999999995432 689999999998888765
No 104
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.65 E-value=5.5e-08 Score=96.16 Aligned_cols=95 Identities=25% Similarity=0.242 Sum_probs=84.2
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243 (460)
Q Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~ 243 (460)
-|.-|+.......+-+||.+|-....+....+..|.|+||+|++.|++.+.++|+=+|+|+-.+|..|+|+|.||...+.
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s 706 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS 706 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence 46667888888999999999986555555556778999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCC
Q 012618 244 QACAALLNPSSAEPL 258 (460)
Q Consensus 244 ~~i~~~Ll~~ga~~~ 258 (460)
.+++.+|+.+|..+.
T Consensus 707 qec~d~llq~gcp~e 721 (749)
T KOG0705|consen 707 QECIDVLLQYGCPDE 721 (749)
T ss_pred HHHHHHHHHcCCCcc
Confidence 999999999997543
No 105
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.65 E-value=6.9e-08 Score=95.14 Aligned_cols=101 Identities=20% Similarity=0.112 Sum_probs=74.6
Q ss_pred HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhC
Q 012618 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD--RVQPDAFGRIPYAIALKYK 242 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~G~tpL~~A~~~~ 242 (460)
|..|+..+..--++.+-.+|. +.-.++....|.||+|++.|+-++|++||.+|.. ++..|..|.|+||-|+..+
T Consensus 870 il~av~~~D~~klqE~h~~gg----~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGG----SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR 945 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCC----ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence 444555555444444455565 4455666778899999999999999999998864 5667888999999999999
Q ss_pred hHHHHHhhCCCCCCCCcccccccccCC
Q 012618 243 HQACAALLNPSSAEPLVWPLQLRNMTD 269 (460)
Q Consensus 243 ~~~i~~~Ll~~ga~~~~~~~~~~~~~~ 269 (460)
+..+..+|++.||........++....
T Consensus 946 ~r~vc~~lvdagasl~ktd~kg~tp~e 972 (1004)
T KOG0782|consen 946 NRAVCQLLVDAGASLRKTDSKGKTPQE 972 (1004)
T ss_pred chHHHHHHHhcchhheecccCCCChHH
Confidence 999999999999887776666655433
No 106
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.64 E-value=1e-08 Score=96.76 Aligned_cols=56 Identities=43% Similarity=0.903 Sum_probs=46.2
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
.+.+++|+||-++.+++...||||.+|..|.-.| +.......|||||.+|++.-.+
T Consensus 366 gsTFeLCKICaendKdvkIEPCGHLlCt~CLa~W---------Q~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 366 GSTFELCKICAENDKDVKIEPCGHLLCTSCLAAW---------QDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred cchHHHHHHhhccCCCcccccccchHHHHHHHhh---------cccCCCCCCCceeeEeccccce
Confidence 3567899999999999999999999999999999 2222358899999999665333
No 107
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.61 E-value=2.5e-08 Score=102.33 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=58.7
Q ss_pred CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618 43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR-YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH 121 (460)
Q Consensus 43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 121 (460)
|..|+|+||+|+..+..+++++||++ |++++.+|+ .|+||||-|+..|+++++-+||.+|+.+ ...|+.|..||.
T Consensus 49 D~~GR~alH~~~S~~k~~~l~wLlqh---Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dkeglsplq 124 (1267)
T KOG0783|consen 49 DRYGRTALHIAVSENKNSFLRWLLQH---GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKEGLSPLQ 124 (1267)
T ss_pred HhhccceeeeeeccchhHHHHHHHhc---CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEecccCCCHHH
Confidence 45677777777777777777777777 777777763 4777777777777777777777777766 677777777776
Q ss_pred HHHH
Q 012618 122 YAAY 125 (460)
Q Consensus 122 ~A~~ 125 (460)
+-++
T Consensus 125 ~~~r 128 (1267)
T KOG0783|consen 125 FLSR 128 (1267)
T ss_pred HHhh
Confidence 6554
No 108
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.59 E-value=4.7e-07 Score=88.18 Aligned_cols=97 Identities=26% Similarity=0.264 Sum_probs=86.1
Q ss_pred CccCCCCCCc------HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccC
Q 012618 75 TDALNRYKQT------PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW 148 (460)
Q Consensus 75 ~~~~~~~g~t------pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 148 (460)
+..+|.+|.| -||..++.|+.++--.||..|++++.+....|.||||.|++.|+.--+++|+-.|++
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD------- 192 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD------- 192 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-------
Confidence 3345666655 489999999999999999999999888888999999999999999999999999999
Q ss_pred CCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 012618 149 GFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN 183 (460)
Q Consensus 149 ~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (460)
++..|.+|+||+.+|-..|+-++.+.|++.
T Consensus 193 -----~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 193 -----PGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred -----CCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 899999999999999999999888887764
No 109
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-08 Score=95.50 Aligned_cols=55 Identities=31% Similarity=0.743 Sum_probs=45.6
Q ss_pred CCCCCCCCccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 314 NTSEASDVELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 314 ~~~~~~~~~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
...+......|.||++++.+.++.||||++ |..|+..+ +.||+||+.|..+++++
T Consensus 298 ~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l---------------~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 298 TFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL---------------PQCPVCRQRIRLVRKRY 353 (355)
T ss_pred cccccCCCCceEEecCCccceeeecCCcEEEchHHHhhC---------------CCCchhHHHHHHHHHHh
Confidence 345556667899999999999999999988 66676655 78999999999887654
No 110
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.54 E-value=6.1e-08 Score=62.89 Aligned_cols=38 Identities=37% Similarity=1.030 Sum_probs=31.2
Q ss_pred CcccccCCCcc-EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 324 CCICFENLCTI-EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 324 C~iC~~~~~~~-~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
|.||++...++ ++++|||.||..|+..+...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~-----------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN-----------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT-----------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc-----------CCCcCC
Confidence 78999999998 679999999999999994442 789998
No 111
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.54 E-value=3.7e-08 Score=65.84 Aligned_cols=40 Identities=33% Similarity=0.785 Sum_probs=32.8
Q ss_pred cCcccccCC---CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618 323 LCCICFENL---CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR 373 (460)
Q Consensus 323 ~C~iC~~~~---~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr 373 (460)
.|.||++.. ..++.++|||.||..|+..|...+ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-----------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-----------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence 599999877 356678999999999999996554 5899998
No 112
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.50 E-value=9.5e-08 Score=62.76 Aligned_cols=42 Identities=31% Similarity=0.689 Sum_probs=30.4
Q ss_pred CcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 324 CCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 324 C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
|.||++-+.+++.++|||.||..|...+..... .....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~-------~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS-------GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS-------SST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC-------CcCCCCcCC
Confidence 789999999999999999999999999954331 112689988
No 113
>PHA02926 zinc finger-like protein; Provisional
Probab=98.48 E-value=7.7e-08 Score=84.66 Aligned_cols=61 Identities=23% Similarity=0.576 Sum_probs=44.0
Q ss_pred CCCccCcccccCCC---------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 319 SDVELCCICFENLC---------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 319 ~~~~~C~iC~~~~~---------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
+....|.||++... ..++.+|+|.||..|...|..... .......||+||.....+..-+|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-----~~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-----ETGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-----ccCcCCcCCCCcceeeeeccccc
Confidence 34577999998742 245679999999999999955321 12334679999999886655544
No 114
>PF13606 Ank_3: Ankyrin repeat
Probab=98.48 E-value=1.7e-07 Score=56.82 Aligned_cols=22 Identities=45% Similarity=0.797 Sum_probs=9.5
Q ss_pred ccHHHHHHHcCcHHHHHHHHhc
Q 012618 47 QSALHLAAAYGQIEVLSMLLDQ 68 (460)
Q Consensus 47 ~t~Lh~A~~~g~~~iv~~Ll~~ 68 (460)
+||||+|+..|++++|++||++
T Consensus 3 ~T~Lh~A~~~g~~e~v~~Ll~~ 24 (30)
T PF13606_consen 3 NTPLHLAASNGNIEIVKYLLEH 24 (30)
T ss_pred CCHHHHHHHhCCHHHHHHHHHc
Confidence 3444444444444444444444
No 115
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.48 E-value=2.6e-07 Score=91.09 Aligned_cols=86 Identities=29% Similarity=0.312 Sum_probs=69.9
Q ss_pred CHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK 242 (460)
Q Consensus 163 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~ 242 (460)
.|||+++.....+-.+.++... +...++..|..|+||||+|+..|+.+.++.|+.+|||+..+|++|++|||.|+..|
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g 99 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTG 99 (560)
T ss_pred cccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcC
Confidence 5699998887776666554443 23356778889999999999999999999999999999999999999999999998
Q ss_pred hHHHHHhh
Q 012618 243 HQACAALL 250 (460)
Q Consensus 243 ~~~i~~~L 250 (460)
+..++..+
T Consensus 100 ~~q~i~~v 107 (560)
T KOG0522|consen 100 NEQIITEV 107 (560)
T ss_pred CHHHHHHH
Confidence 87666544
No 116
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.48 E-value=4.2e-07 Score=89.64 Aligned_cols=86 Identities=22% Similarity=0.251 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCC
Q 012618 15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGK 94 (460)
Q Consensus 15 L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 94 (460)
||+++...+.+-+..++...........+..|+||||+|+..|+.+.++.|+.. ++++..+|..|++|||.|+..|+
T Consensus 24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a---~Adv~~kN~~gWs~L~EAv~~g~ 100 (560)
T KOG0522|consen 24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA---GADVSIKNNEGWSPLHEAVSTGN 100 (560)
T ss_pred cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc---CCCccccccccccHHHHHHHcCC
Confidence 555555555554444433332222223334455555555555555555555555 55555555555555555555555
Q ss_pred HHHHHHHHH
Q 012618 95 LSCVKKLIE 103 (460)
Q Consensus 95 ~~~v~~Ll~ 103 (460)
.+++..++.
T Consensus 101 ~q~i~~vlr 109 (560)
T KOG0522|consen 101 EQIITEVLR 109 (560)
T ss_pred HHHHHHHHH
Confidence 555554444
No 117
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.47 E-value=4.6e-07 Score=89.84 Aligned_cols=88 Identities=26% Similarity=0.315 Sum_probs=52.3
Q ss_pred HHHHHHcCcHHHHHHHHhccCCCCCCc----cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618 50 LHLAAAYGQIEVLSMLLDQFFLYTNTD----ALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125 (460)
Q Consensus 50 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 125 (460)
|..|+...++..+-+||.+ |.... .-+.+|.|+||+|+..|++.+.++|+-+|+++ ...|.+|+|+|.||-.
T Consensus 628 Ll~A~~~~Dl~t~~lLLAh---g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~ 703 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAH---GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQ 703 (749)
T ss_pred HHHHHHHHHHHHHHHHHhc---cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhh
Confidence 5555555566666666655 32211 22344566666666666666666666666665 5555666666666666
Q ss_pred cCCHHHHHHHHHhcCC
Q 012618 126 YGHSDCLQALLTAART 141 (460)
Q Consensus 126 ~g~~~iv~~Ll~~~~~ 141 (460)
.|.-+++..|+++|..
T Consensus 704 a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 704 AGSQECIDVLLQYGCP 719 (749)
T ss_pred cccHHHHHHHHHcCCC
Confidence 6666666666666654
No 118
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.46 E-value=2.6e-07 Score=57.50 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=17.6
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN 79 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 79 (460)
|.||||+|+..|+.+++++||++ |++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~---ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKH---GADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHT---TSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHC---cCCCCCCC
Confidence 45555555555555555555555 55555544
No 119
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.40 E-value=1.2e-06 Score=91.30 Aligned_cols=124 Identities=24% Similarity=0.237 Sum_probs=102.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPT--VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
.++..+..|+..|+.-.|+..++.... ++....|+=|+++|+.|+.+.+.+++++|++. .... ..+|.
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~---~~~~-------gdALL 93 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT---SSEE-------GDALL 93 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC---cccc-------chHHH
Confidence 456678999999999999999997555 66666677899999999999999999999998 3332 46899
Q ss_pred HHHHcCCHHHHHHHHHcCCcc---------ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCC
Q 012618 88 VAAMNGKLSCVKKLIESGAFI---------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~---------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 143 (460)
+|+..|.+++|+.++.+-... ....-..+.|||.+||..++.||++.|+.+++..+
T Consensus 94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 999999999999999874432 11122357899999999999999999999998744
No 120
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3e-07 Score=78.05 Aligned_cols=46 Identities=28% Similarity=0.706 Sum_probs=37.5
Q ss_pred ccCcccccCCCccE--ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 322 ELCCICFENLCTIE--IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 322 ~~C~iC~~~~~~~~--~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
-.|.|||+.....+ ...|||+||..|+...-... ..||+||..|+.
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKITH 179 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhC-----------CCCCCcccccch
Confidence 57999999887765 37899999999997774333 789999998854
No 121
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.36 E-value=1.2e-06 Score=91.32 Aligned_cols=126 Identities=21% Similarity=0.146 Sum_probs=102.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN 194 (460)
Q Consensus 115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~ 194 (460)
.+.--...|+.+|+...|+..++....... ++|.+|.-|+++|+.|+.+.+.+++++|+++... .
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~l--------ninc~d~lGr~al~iai~nenle~~eLLl~~~~~----~--- 88 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKL--------NINCRDPLGRLALHIAIDNENLELQELLLDTSSE----E--- 88 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhcccccc--------chhccChHhhhceecccccccHHHHHHHhcCccc----c---
Confidence 344556789999999999999987665222 2899999999999999999999999999998762 1
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCc
Q 012618 195 GYPGSTPLHFAARGGSLECIRELLAWGADR----------VQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLV 259 (460)
Q Consensus 195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~----------~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~ 259 (460)
..+|.+|+..|..++|++|+.+-... ...-..+.||+.+|+..++.+|+++|+..|+....
T Consensus 89 ----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 89 ----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred ----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 36899999999999999999874332 12234578999999999999999999999987653
No 122
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-07 Score=83.51 Aligned_cols=46 Identities=33% Similarity=0.782 Sum_probs=39.8
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHH-HhhcCCCCcccCCCCCCCCcccccccc
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLA-LCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~-~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
..|.||++.+..+...||||+||+.|... |++.. .-.||+||+.+.
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k----------~~~CplCRak~~ 262 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK----------YEFCPLCRAKVY 262 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHHHHhhc----------cccCchhhhhcc
Confidence 46999999999999999999999999999 76555 245999999863
No 123
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.28 E-value=5.6e-07 Score=60.01 Aligned_cols=40 Identities=38% Similarity=0.916 Sum_probs=32.9
Q ss_pred CcccccCC---CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618 324 CCICFENL---CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRC 374 (460)
Q Consensus 324 C~iC~~~~---~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 374 (460)
|.+|++.. ....+++|||.||..|+..+- .....||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-----------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-----------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-----------CCCCCCcCCCC
Confidence 88999887 357778999999999998882 34478999985
No 124
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.26 E-value=6.6e-07 Score=95.59 Aligned_cols=91 Identities=34% Similarity=0.393 Sum_probs=82.3
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 012618 157 RDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYA 236 (460)
Q Consensus 157 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~ 236 (460)
.-..|.|+||.|+..+..-++++|+++|+ +.+..|..|+||||.+...|+...+..|+++|++.++.+..|.+|++
T Consensus 652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga----~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~ 727 (785)
T KOG0521|consen 652 VLCIGCSLLHVAVGTGDSGAVELLLQNGA----DVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLD 727 (785)
T ss_pred hhhcccchhhhhhccchHHHHHHHHhcCC----cchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhh
Confidence 34578999999999999999999999999 56778899999999999999999999999999999999999999999
Q ss_pred HHHHhChHHHHHhhC
Q 012618 237 IALKYKHQACAALLN 251 (460)
Q Consensus 237 ~A~~~~~~~i~~~Ll 251 (460)
+|....+.+++-+|.
T Consensus 728 ~a~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 728 IAMEAANADIVLLLR 742 (785)
T ss_pred HHhhhccccHHHHHh
Confidence 998887766666553
No 125
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.19 E-value=1.4e-06 Score=57.23 Aligned_cols=40 Identities=33% Similarity=0.843 Sum_probs=34.1
Q ss_pred CcccccCCCccE-ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 324 CCICFENLCTIE-IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 324 C~iC~~~~~~~~-~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
|.||++...... .++|||.||..|+..+... .....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~---------~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN---------SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH---------TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh---------cCCccCCcC
Confidence 789999999998 8999999999999999543 233679998
No 126
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.1e-06 Score=86.56 Aligned_cols=58 Identities=31% Similarity=0.595 Sum_probs=47.2
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce--eeeEee
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN--LVAARI 384 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~--~~~~~~ 384 (460)
...|.|||+.+..++.+-|||.||..|+....... +......||+||+.|.- +..+.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s------~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYS------AIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhh------cccCCccCCchhhhccccceeeeee
Confidence 67799999999999999999999999998875444 23445789999999977 555554
No 127
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.13 E-value=2.1e-06 Score=57.30 Aligned_cols=44 Identities=34% Similarity=0.803 Sum_probs=34.2
Q ss_pred cCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 323 LCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 323 ~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
.|.||++....... .+|||.||..|...|... ....||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~----------~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS----------GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh----------CcCCCCCCCCcC
Confidence 38999999855444 559999999999988443 236799999864
No 128
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.11 E-value=5e-06 Score=88.56 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=100.1
Q ss_pred cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHH
Q 012618 41 TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120 (460)
Q Consensus 41 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L 120 (460)
.....|++.||+++..+..-+++.+++- .+......+.+|+-.+|+ |..++.+.+-+|+.....-++++|..|+|||
T Consensus 569 ~~~~r~~lllhL~a~~lyawLie~~~e~--~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL 645 (975)
T KOG0520|consen 569 SVNFRDMLLLHLLAELLYAWLIEKVIEW--AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL 645 (975)
T ss_pred cCCCcchHHHHHHHHHhHHHHHHHHhcc--cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence 3446788999999999999999998884 255566778888888888 4455666655555443333488899999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 012618 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN 183 (460)
Q Consensus 121 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (460)
|+|+.+|+..++..|++.++..... .........|.|+-.+|-.+|+..+.-+|-+.
T Consensus 646 ~wAa~~G~e~l~a~l~~lga~~~~~------tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 646 HWAAFRGREKLVASLIELGADPGAV------TDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred chHhhcCHHHHHHHHHHhccccccc------cCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 9999999999999999888875422 11344556688888888888888777777665
No 129
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=3.3e-06 Score=82.94 Aligned_cols=48 Identities=25% Similarity=0.631 Sum_probs=40.5
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
....|.||++.+.+++.++|||.||..|...+... ...||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-----------~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-----------QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-----------CCCCCCCCCcccc
Confidence 44689999999999999999999999999887432 1579999998754
No 130
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.02 E-value=2.7e-05 Score=73.95 Aligned_cols=74 Identities=30% Similarity=0.546 Sum_probs=63.8
Q ss_pred cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126 (460)
Q Consensus 48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 126 (460)
--|..|++.|+.+.|++|++. |.++|.+|....+||.+|+..||.++|++|+++|+-- .....+|..++ |++.+
T Consensus 38 ~elceacR~GD~d~v~~LVet---gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~-YgaLn 111 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVET---GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCH-YGALN 111 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHh---CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhh-hhhhh
Confidence 458999999999999999998 9999999999999999999999999999999999954 55666777774 55543
No 131
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.01 E-value=7.2e-06 Score=59.41 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=39.9
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
..|.||++...+++..+|||.+|..|...+... ...||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-----------~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-----------HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-----------CCCCCCCcCCCCh
Confidence 359999999999999999999999999999543 2679999998854
No 132
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.94 E-value=1.1e-05 Score=86.01 Aligned_cols=132 Identities=23% Similarity=0.169 Sum_probs=99.8
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618 76 DALNRYKQTPLMVAAMNGKLSCVKKLIES-GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV 154 (460)
Q Consensus 76 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v 154 (460)
......|+|.||+++..+...+++.+++- |... ...+.+|.-.+|++ ..++.++.-+|+...... +
T Consensus 568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~a-----------i 634 (975)
T KOG0520|consen 568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFC-AALGYEWAFLPISADGVA-----------I 634 (975)
T ss_pred ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHh-hhcCCceeEEEEeecccc-----------c
Confidence 34556788999999999999999999986 4443 44556778888884 445566655555433322 8
Q ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC--CCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 012618 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG--GNGYPGSTPLHFAARGGSLECIRELLAW 220 (460)
Q Consensus 155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 220 (460)
+++|..|+||||+|+..|+..++..|++.|++.+..++ .....|.|+-.+|-.+|+..+.-+|-+.
T Consensus 635 ~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 635 DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 99999999999999999999999999988886554433 3345588999999999998888888765
No 133
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.93 E-value=9.2e-06 Score=52.13 Aligned_cols=39 Identities=36% Similarity=0.889 Sum_probs=32.9
Q ss_pred CcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 324 CCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 324 C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
|.||++....+..++|||.||..|...|.. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK----------SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH----------hCcCCCCCC
Confidence 789999999999999999999999998843 223669987
No 134
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.89 E-value=7.8e-06 Score=53.67 Aligned_cols=31 Identities=39% Similarity=0.846 Sum_probs=20.3
Q ss_pred CcccccCCCc----cEecCCCCccchhhHHHHhhcC
Q 012618 324 CCICFENLCT----IEIKPCGHQMCAHCTLALCCHK 355 (460)
Q Consensus 324 C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~ 355 (460)
|.||.+ +.+ ++.++|||.+|..|...+...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 789999 777 8889999999999999995543
No 135
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.87 E-value=1.5e-05 Score=85.45 Aligned_cols=90 Identities=27% Similarity=0.245 Sum_probs=81.3
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
..|.|+||.|+..+..-++++||++ |+++|.+|..|.||||.+...|+...+..|+++|++. ...+..|.++|++|
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIA 729 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHH
Confidence 3578999999999999999999999 9999999999999999999999999999999999998 77778999999999
Q ss_pred HHcCCHHHHHHHHH
Q 012618 124 AYYGHSDCLQALLT 137 (460)
Q Consensus 124 ~~~g~~~iv~~Ll~ 137 (460)
....+.+++-++.-
T Consensus 730 ~~~~~~d~~~l~~l 743 (785)
T KOG0521|consen 730 MEAANADIVLLLRL 743 (785)
T ss_pred hhhccccHHHHHhh
Confidence 87777776655543
No 136
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.87 E-value=1.3e-05 Score=59.65 Aligned_cols=41 Identities=41% Similarity=0.958 Sum_probs=31.7
Q ss_pred ccCcccccCC-------------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618 322 ELCCICFENL-------------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR 373 (460)
Q Consensus 322 ~~C~iC~~~~-------------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr 373 (460)
+.|.||++.. ..++..+|||.|...|+..|...+ ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-----------NTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-----------SB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-----------CcCCCCC
Confidence 3499999877 334556899999999999995444 5899998
No 137
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.84 E-value=4.5e-05 Score=65.89 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=62.0
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 012618 72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART 141 (460)
Q Consensus 72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 141 (460)
+.++|.+|..|+|+||.|+..|+.+.+.+|+.+|+..+...|..+.+++.+|-..|..++++.|.+...+
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 4578999999999999999999999999999999555588889999999999999999999999887544
No 138
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.6e-05 Score=71.99 Aligned_cols=48 Identities=29% Similarity=0.735 Sum_probs=39.3
Q ss_pred CCCccCcccccCCC-------------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 319 SDVELCCICFENLC-------------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 319 ~~~~~C~iC~~~~~-------------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.....|.||+|... .+.-+||||.+--.|...||-+. ..||+||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-----------QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-----------QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-----------cCCCcccCccc
Confidence 34567999999822 24668999999999999998777 89999999953
No 139
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.76 E-value=6.4e-05 Score=64.94 Aligned_cols=72 Identities=28% Similarity=0.371 Sum_probs=62.9
Q ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 012618 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD 228 (460)
Q Consensus 154 v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 228 (460)
+|.+|..|+|+|+.|+..|..+.+.+|+.+|+ ..+...|..|.+++.+|-+.|..++|+.|.+.-.+-...+
T Consensus 5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~---a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ 76 (223)
T KOG2384|consen 5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGV---AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM 76 (223)
T ss_pred ccchhhhcchHHHHHhhhcchhHHHHHhccCc---ccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence 89999999999999999999999999999994 2667788899999999999999999999998854444433
No 140
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=2.7e-05 Score=73.37 Aligned_cols=48 Identities=23% Similarity=0.584 Sum_probs=34.4
Q ss_pred CccCcccccC---CCccEe--cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFEN---LCTIEI--KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~---~~~~~~--~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.+|... ..++.+ .+|||.||..|...+.. .....||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~----------~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc----------CCCCCCCCCCCccch
Confidence 4679999984 222222 28999999999998732 123579999998855
No 141
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.72 E-value=1.6e-05 Score=72.56 Aligned_cols=45 Identities=29% Similarity=0.607 Sum_probs=38.6
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
...|.||-+.....+..+|||.||.-|+.+.. ...+.||+||.+-
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL-----------~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHL-----------GTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHh-----------cCCCCCccccccH
Confidence 45799999999999999999999999997763 3348999999764
No 142
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.72 E-value=0.00015 Score=68.95 Aligned_cols=58 Identities=33% Similarity=0.380 Sum_probs=54.3
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 012618 117 RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186 (460)
Q Consensus 117 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 186 (460)
.--|..|++.|..+.|++|++.|.+ +|.+|....+||.+|...||.++|++||++||.
T Consensus 37 f~elceacR~GD~d~v~~LVetgvn------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVN------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCC------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 4568899999999999999998887 999999999999999999999999999999993
No 143
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.65 E-value=0.00019 Score=70.65 Aligned_cols=69 Identities=29% Similarity=0.440 Sum_probs=59.1
Q ss_pred CHHHHHHHHHcCCccccCCC--CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 012618 173 WSECVHTLLDNGALACSSTG--GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY 241 (460)
Q Consensus 173 ~~~~v~~Ll~~ga~~~~~~~--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~ 241 (460)
-...+++|.++++..|..+. ..++.-.|+||+|+..|...+|.+||+.|+|+...|..|+||+.++...
T Consensus 403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk 473 (591)
T KOG2505|consen 403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK 473 (591)
T ss_pred chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence 35788999999987765543 4455678999999999999999999999999999999999999998733
No 144
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.8e-05 Score=71.36 Aligned_cols=45 Identities=33% Similarity=0.741 Sum_probs=39.2
Q ss_pred CcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 324 CCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 324 C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
|..|.++...+.++||.|.+ |..|...+ ..||+|+.++.+.+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~---------------~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESL---------------RICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccC---------------ccCCCCcChhhceeecc
Confidence 99999999999999999987 99998444 77999999998877654
No 145
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.2e-05 Score=70.37 Aligned_cols=46 Identities=28% Similarity=0.674 Sum_probs=37.3
Q ss_pred CccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 321 VELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 321 ~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
.-.|.|||+.+.. ...+||.|.|-..|...|.-. -...||+||.+|
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~----------y~~~CPvCrt~i 371 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG----------YSNKCPVCRTAI 371 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhh----------hcccCCccCCCC
Confidence 4579999987754 667899999999999999542 227799999986
No 146
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=9.4e-05 Score=70.96 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=37.7
Q ss_pred ccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 322 ELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 322 ~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
..|.||+|.+.. +..+||+|.|-..|...|-... ...||+|++.|-.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~----------r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT----------RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc----------CccCCCCCCcCCC
Confidence 689999998876 6679999999779999993332 3679999996543
No 147
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.50 E-value=3.5e-05 Score=71.87 Aligned_cols=46 Identities=35% Similarity=0.844 Sum_probs=39.9
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
...|.||++-+..++..||+|.||.-|+....... +.||.|+-++.
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-----------p~CP~C~~~~~ 68 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-----------PQCPTCCVTVT 68 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-----------CCCCceecccc
Confidence 45699999999999999999999999998774444 88999998763
No 148
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=7.9e-05 Score=69.90 Aligned_cols=54 Identities=24% Similarity=0.652 Sum_probs=44.3
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
.++..+|+||...+.+.++.||+|.-|..|+.+-. .+.+.|-+|+..|..++..
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHl-----------mN~k~CFfCktTv~~~~ld 472 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHL-----------MNCKRCFFCKTTVIDVILD 472 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHH-----------hcCCeeeEecceeeehhcc
Confidence 35667899999999999999999999999996552 3348899999998874333
No 149
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.45 E-value=8.3e-05 Score=69.55 Aligned_cols=59 Identities=27% Similarity=0.577 Sum_probs=46.3
Q ss_pred CCCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 316 SEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 316 ~~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
+...+.+.|.||-+..--...+||+|.+|.-|+.++-.-- ....||+||.+-+.++...
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY---------~~K~C~~CrTE~e~V~fT~ 114 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALY---------MQKGCPLCRTETEAVVFTA 114 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHH---------hccCCCccccccceEEEec
Confidence 3344667899999999999999999999999998872211 2267999999987776554
No 150
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.26 E-value=0.00014 Score=49.54 Aligned_cols=46 Identities=26% Similarity=0.610 Sum_probs=37.3
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
....|..|......-.++||||.+|..|..-. +-.-||+|-.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~-------------rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE-------------RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh-------------hccCCCCCCCcccC
Confidence 34679999999899999999999999998333 33679999998753
No 151
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00013 Score=67.32 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=43.3
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
...|.||+....-++-++|+|.||.-|........ ...|++||.+|..-+..+-
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd----------k~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND----------KKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcC----------CCCCceecCCCCcchhcch
Confidence 34699999999999999999999999996553322 3569999999988766653
No 152
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00024 Score=68.56 Aligned_cols=61 Identities=23% Similarity=0.530 Sum_probs=46.5
Q ss_pred CCCccCcccccCCCccE-----e---cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 319 SDVELCCICFENLCTIE-----I---KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~-----~---~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
+....|.||++..-... + .+|-|.+|..|+..|-+.... .....+.||+||.++..+..-.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s~~v~pS~ 227 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPSSFVNPSS 227 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCccccccccc
Confidence 55678999999988877 6 679999999999999433311 2233578999999998776553
No 153
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.11 E-value=0.00044 Score=51.57 Aligned_cols=51 Identities=22% Similarity=0.140 Sum_probs=38.7
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeee
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVA 381 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~ 381 (460)
...|.|+.+-..+++..||||.++..|...|... ....||+||.+++....
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~----------~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQ----------NGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT----------TSSB-TTT-SB-SGGGS
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc----------CCCCCCCCCCcCCcccc
Confidence 4579999999999999999999999999999544 34889999999876433
No 154
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00022 Score=69.59 Aligned_cols=44 Identities=32% Similarity=0.723 Sum_probs=38.1
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRC 374 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 374 (460)
+...|.||++.+..+..+||||.||..|...+.. ....||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----------~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----------GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-----------CCcCCcccCC
Confidence 4567999999999999999999999999988843 3378999994
No 155
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.05 E-value=0.00055 Score=51.58 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=26.8
Q ss_pred cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 334 IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 334 ~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
++.-.|+|.|-..|+.+|-. .......||+||++.
T Consensus 47 lv~g~C~H~FH~hCI~kWl~--------~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 47 LVWGKCSHNFHMHCILKWLS--------TQSSKGQCPMCRQPW 81 (85)
T ss_pred eeeccCccHHHHHHHHHHHc--------cccCCCCCCCcCCee
Confidence 45557999999999999933 223347899999975
No 156
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00016 Score=75.35 Aligned_cols=52 Identities=23% Similarity=0.592 Sum_probs=42.4
Q ss_pred CCCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 316 SEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 316 ~~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.+....-.|.+|.+++.+.+..-|||.||..|..... ..+.+.||.|-..-.
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~----------etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRY----------ETRQRKCPKCNAAFG 689 (698)
T ss_pred HHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHH----------HHhcCCCCCCCCCCC
Confidence 3445566899999999999999999999999997773 334488999988753
No 157
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00032 Score=73.48 Aligned_cols=48 Identities=33% Similarity=0.713 Sum_probs=41.2
Q ss_pred CCCccCcccccCCCc-----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 319 SDVELCCICFENLCT-----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~-----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.....|.||.+.... +..+||||.||..|...|.... ..||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-----------qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-----------QTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-----------CcCCcchhhhh
Confidence 345789999999888 7889999999999999997665 78999999443
No 158
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.86 E-value=0.0019 Score=37.37 Aligned_cols=27 Identities=56% Similarity=0.836 Sum_probs=17.9
Q ss_pred CChHHHHHHhcCCHHHHHHHHHcCCCC
Q 012618 198 GSTPLHFAARGGSLECIRELLAWGADR 224 (460)
Q Consensus 198 g~TpLh~A~~~g~~~~v~~Ll~~gad~ 224 (460)
|.||||+|+..++.++++.|+++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456677776667777777776666654
No 159
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.73 E-value=0.00059 Score=48.18 Aligned_cols=42 Identities=29% Similarity=0.699 Sum_probs=21.1
Q ss_pred ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
..|.+|.+-...++. ..|.|.||..|...- . ...||+|+.+-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~-----------~--~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDC-----------I--GSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGG-----------T--TTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHh-----------c--CCCCCCcCChH
Confidence 469999999999875 689999999999221 1 14599999884
No 160
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00093 Score=65.97 Aligned_cols=50 Identities=30% Similarity=0.759 Sum_probs=41.0
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
...-.|.||++....++..||||.+|..|..+... ....||.||.++...
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-----------~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-----------QETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-----------cCCCCcccccccccc
Confidence 34456999999999999999999999999887422 227799999998753
No 161
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.48 E-value=0.00097 Score=57.65 Aligned_cols=51 Identities=22% Similarity=0.485 Sum_probs=41.9
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
...|.||......+++..|||.||..|+.+-.. ..+.|-+|-....+.+.+
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-----------kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-----------KGDECGVCGKATYGRFWV 246 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-----------cCCcceecchhhccceeH
Confidence 357999999999999999999999999966533 338899999887666544
No 162
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.47 E-value=0.0045 Score=52.10 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=42.4
Q ss_pred ccCcccccCCCccEecCC-------CCccch------hhHHHHhhcCCCCccc--------------------CCCCCCC
Q 012618 322 ELCCICFENLCTIEIKPC-------GHQMCA------HCTLALCCHKKPDIIT--------------------AVPEVPA 368 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~C-------gH~~C~------~C~~~~~~~~~~~~~~--------------------~~~~~~~ 368 (460)
-.|.|||+.+-+.|++-| .-.+|. .|+.+.+.-....... .......
T Consensus 3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 82 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA 82 (162)
T ss_pred ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence 469999999999999844 445553 5777765432222111 1123468
Q ss_pred CcccccccceeeeEe
Q 012618 369 CPFCRCSIANLVAAR 383 (460)
Q Consensus 369 CP~Cr~~i~~~~~~~ 383 (460)
||+||..|.++.++.
T Consensus 83 CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 83 CPLCRGEVKGWTVVE 97 (162)
T ss_pred CccccCceeceEEch
Confidence 999999999999986
No 163
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.36 E-value=0.0052 Score=60.86 Aligned_cols=66 Identities=23% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHcCCCcccccC----CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618 22 GDLQMIEAMVEADPTVLGMTS----GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA 90 (460)
Q Consensus 22 g~~~~vk~Ll~~~~~~~~~~~----~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~ 90 (460)
.-.+.|++|.+++.+.+...+ ++.--|+||+|+..|.-++|.+||+. |+|+-.+|..|.||..++.
T Consensus 402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee---g~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE---GCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh---cCCchhcccCCCCcccccc
Confidence 345677778777766543322 22345888888888888888888888 8888888888888888776
No 164
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0015 Score=60.43 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=41.5
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
..|-||-..+.++++..|||.||..|+..-. .....|++|-+.+.+.+-+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~-----------qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPY-----------QKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccc-----------ccCCcceecccccccccch
Confidence 4599999999999999999999999995543 3337899999998776543
No 165
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=96.19 E-value=0.027 Score=48.96 Aligned_cols=138 Identities=17% Similarity=0.058 Sum_probs=87.2
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163 (460)
Q Consensus 84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t 163 (460)
-.|..|++.+...+++..-+...+- -...++.+..|++..+.++|+|+-+.-.. .+-.+
T Consensus 48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-----------------~~~~~ 106 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-----------------YNPED 106 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-----------------CCchh
Confidence 4566777777777777765543211 12456777778888888888888433221 22334
Q ss_pred HHHHHHHcCCHHHHH----HHHHcCCccccCCCCCCC--CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618 164 PLHLAARQGWSECVH----TLLDNGALACSSTGGNGY--PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237 (460)
Q Consensus 164 ~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~d~--~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~ 237 (460)
.+..|....+.++.. +++++... ....|. --..-|.+|+..|-+..+...|++|.+++. ++|..
T Consensus 107 iFdIA~~~kDlsLyslGY~l~~~~~~~----~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~ 176 (192)
T PF03158_consen 107 IFDIAFAKKDLSLYSLGYKLLFNRMMS----EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQ 176 (192)
T ss_pred hhhhhhhccchhHHHHHHHHHHhhccc----ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHH
Confidence 556666666665422 22232220 000000 001246789999999999999999988864 78999
Q ss_pred HHHhChHHHHHhhCC
Q 012618 238 ALKYKHQACAALLNP 252 (460)
Q Consensus 238 A~~~~~~~i~~~Ll~ 252 (460)
|+++++..++.+++.
T Consensus 177 Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 177 AVKYNHRKILDYFIR 191 (192)
T ss_pred HHHhhHHHHHHHhhc
Confidence 999999999988764
No 166
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.16 E-value=0.0087 Score=34.37 Aligned_cols=18 Identities=56% Similarity=0.879 Sum_probs=6.4
Q ss_pred HHHHHHHcCcHHHHHHHH
Q 012618 49 ALHLAAAYGQIEVLSMLL 66 (460)
Q Consensus 49 ~Lh~A~~~g~~~iv~~Ll 66 (460)
|||+|+..++.++++.|+
T Consensus 5 ~l~~~~~~~~~~~~~~ll 22 (30)
T smart00248 5 PLHLAAENGNLEVVKLLL 22 (30)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333333333333333333
No 167
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0033 Score=56.90 Aligned_cols=42 Identities=31% Similarity=0.720 Sum_probs=29.9
Q ss_pred ccCcccccCCCccE--ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 322 ELCCICFENLCTIE--IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 322 ~~C~iC~~~~~~~~--~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
--|-.|...+.... .+.|+|+||..|... .....||+||.+|
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~-------------~~~~~C~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKA-------------SSPDVCPLCKKSI 47 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhccc-------------CCcccccccccee
Confidence 34777776555433 368999999999822 2334899999994
No 168
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.96 E-value=0.056 Score=48.48 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCC-ccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 012618 174 SECVHTLLDNGA-LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222 (460)
Q Consensus 174 ~~~v~~Ll~~ga-~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 222 (460)
..+++++|++|. ++|.... +-..|.|-|.-|++.++.+++.+||++||
T Consensus 230 ~kvL~~Fi~~Glv~vN~~F~-~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 230 YKVLEYFINRGLVDVNKKFQ-KVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred HHHHHHHHhccccccchhhh-ccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 445555555553 2222111 12245556666666666666666666555
No 169
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.95 E-value=0.042 Score=49.28 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHcC-CCCCC---CCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 209 GSLECIRELLAWG-ADRVQ---PDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 209 g~~~~v~~Ll~~g-ad~~~---~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
.+..+++++|++| +++|. .-..|.|-|.-|+++++.+++.+|+++||
T Consensus 228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 3578899999998 67765 35679999999999999999999999998
No 170
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.82 E-value=0.0084 Score=62.33 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=39.0
Q ss_pred cCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeec
Q 012618 323 LCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARII 385 (460)
Q Consensus 323 ~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~ 385 (460)
.|.+|+....+ ..-.+|+|.||..|...||... ..||+||....++++..+-
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-----------qTCPiDR~EF~~v~V~eS~ 179 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-----------QTCPVDRGEFGEVKVLEST 179 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-----------ccCchhhhhhheeeeeccc
Confidence 45555443333 2224899999999999998776 7899999999988888763
No 171
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.0015 Score=61.86 Aligned_cols=53 Identities=28% Similarity=0.572 Sum_probs=41.6
Q ss_pred ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
..|.||++-...... ..|+|.||..|+..-. ......||.||+...+-.-++.
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~----------r~gn~ecptcRk~l~SkrsLr~ 97 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKAL----------RSGNNECPTCRKKLVSKRSLRI 97 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHH----------HhcCCCCchHHhhccccccCCC
Confidence 469999998776555 5799999999996652 2334789999999988777765
No 172
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.35 E-value=0.0093 Score=56.89 Aligned_cols=48 Identities=33% Similarity=0.780 Sum_probs=38.9
Q ss_pred CCCCCccCcccccCCCccEecCC--CCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 317 EASDVELCCICFENLCTIEIKPC--GHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~~~~~~C--gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
...+...|.||++...-+.+. | ||+.|..|...+ ...||+||.+|..+
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~~--------------~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTKV--------------SNKCPTCRLPIGNI 93 (299)
T ss_pred cchhhccCchhhccCccccee-cCCCcEehhhhhhhh--------------cccCCccccccccH
Confidence 344566799999999999887 7 899999998444 27899999999743
No 173
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.0062 Score=55.48 Aligned_cols=49 Identities=20% Similarity=0.600 Sum_probs=38.6
Q ss_pred CCccCcccccCCCccE----------ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 320 DVELCCICFENLCTIE----------IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~----------~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
+...|.||-.+.-..+ -+.|+|.|-.-|...||--.| .++||+|+..|+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK---------kqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK---------KQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC---------CCCCchHHHHhh
Confidence 3467999987665433 578999999999999986653 378999999875
No 174
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.0089 Score=59.01 Aligned_cols=50 Identities=28% Similarity=0.696 Sum_probs=36.9
Q ss_pred CCCCccCcccccCCC-----------------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 318 ASDVELCCICFENLC-----------------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~-----------------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.++...|.|||.... +-.+.||.|.+-..|.+.|...-| -.||+||+++-
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk----------l~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK----------LICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc----------ccCCccCCCCC
Confidence 445567999996432 234469999999999999955332 57999999874
No 175
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.068 Score=49.21 Aligned_cols=54 Identities=22% Similarity=0.472 Sum_probs=40.9
Q ss_pred CCCCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 318 ASDVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
.+...+|.+|.+.+..+.. .+|||.+|.-|+..-|-.+ ..-.||.|-.+...+-
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~---------asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD---------ASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch---------hhcccCccCCCCcchh
Confidence 3445679999999988777 5699999999996664333 2257999998876543
No 176
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=94.93 E-value=0.52 Score=41.18 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=94.5
Q ss_pred cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127 (460)
Q Consensus 48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g 127 (460)
-.|..|+..+.+.|++..-+. ..+- -...++.+-.||+..+.|+|+|+-.. . .. .+-.+.+..|....
T Consensus 48 CLl~HAVk~nmL~ILqkyke~---L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L-~i--~~~~~iFdIA~~~k 115 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKED---LENE---RYLNQELFELACEEQKYDIVKWIGQN---L-HI--YNPEDIFDIAFAKK 115 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHH---hhcc---hhHHHHHHHHHHHHccccHHHHHhhc---c-CC--CCchhhhhhhhhcc
Confidence 467889999999999888775 2111 13467888899999999999999332 2 22 23456778888888
Q ss_pred CHHHHH----HHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618 128 HSDCLQ----ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203 (460)
Q Consensus 128 ~~~iv~----~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh 203 (460)
+.++.. ++++..... .. .+ .+.--..-|..|+..|-...+.-.|++|.+++ .+.|.
T Consensus 116 DlsLyslGY~l~~~~~~~~---~~------~d-~~~ll~~hl~~a~~kgll~F~letlkygg~~~----------~~vls 175 (192)
T PF03158_consen 116 DLSLYSLGYKLLFNRMMSE---HN------ED-PTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD----------IIVLS 175 (192)
T ss_pred chhHHHHHHHHHHhhcccc---cc------cC-HHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc----------HHHHH
Confidence 876632 222221110 00 00 00000134778999999999999999998332 28999
Q ss_pred HHHhcCCHHHHHHHHH
Q 012618 204 FAARGGSLECIRELLA 219 (460)
Q Consensus 204 ~A~~~g~~~~v~~Ll~ 219 (460)
.|+..++..++.+++.
T Consensus 176 ~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 176 QAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHhhHHHHHHHhhc
Confidence 9999999999998874
No 177
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.72 E-value=0.014 Score=61.95 Aligned_cols=51 Identities=27% Similarity=0.628 Sum_probs=38.7
Q ss_pred CCCccCccccc-------CCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFE-------NLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~-------~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
+-.++|.||.. ......+--|.|.|-.+|.-+|- +......||+||++|+-
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf---------~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWF---------ASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHH---------HhcCCCCCCcccccccc
Confidence 44678999984 33456666799999999999993 33345789999998863
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.63 E-value=0.024 Score=55.62 Aligned_cols=47 Identities=23% Similarity=0.650 Sum_probs=34.6
Q ss_pred CCCCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 318 ASDVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
-.+...|.||+++.-. +...+|.|.|-..|...|- -..||+||---.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~-------------~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW-------------DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc-------------cCcChhhhhhcC
Confidence 3456789999988755 3557899999558998881 156888886544
No 179
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.81 E-value=0.056 Score=36.14 Aligned_cols=28 Identities=36% Similarity=0.760 Sum_probs=14.9
Q ss_pred CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 338 PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 338 ~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
+||.++|..|+...-. .....||-||.+
T Consensus 19 ~Cgf~IC~~C~~~i~~----------~~~g~CPgCr~~ 46 (48)
T PF14570_consen 19 ECGFQICRFCYHDILE----------NEGGRCPGCREP 46 (48)
T ss_dssp TTS----HHHHHHHTT----------SS-SB-TTT--B
T ss_pred cCCCcHHHHHHHHHHh----------ccCCCCCCCCCC
Confidence 5788999999988821 223789999986
No 180
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.70 E-value=0.023 Score=41.85 Aligned_cols=56 Identities=20% Similarity=0.497 Sum_probs=24.7
Q ss_pred ccCcccccCCC------ccEec--CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 322 ELCCICFENLC------TIEIK--PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 322 ~~C~iC~~~~~------~~~~~--~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
..|.||+...- +.+.. .|+..+-..|+..|-...........+....||+|+++|+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 45999997643 23333 6888888899988865432222122233357999999985
No 181
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.035 Score=53.92 Aligned_cols=51 Identities=27% Similarity=0.656 Sum_probs=35.9
Q ss_pred ccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 322 ELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 322 ~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..|.||++.... +.++||+|++|..|+...-..... ........||-|.-+
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~---eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQ---EGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhh---cceeeeecCCCCCCc
Confidence 459999987655 777999999999999877333211 122344678887654
No 182
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.44 E-value=0.053 Score=44.23 Aligned_cols=49 Identities=29% Similarity=0.596 Sum_probs=39.6
Q ss_pred CccCcccccCCCccEec----CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 321 VELCCICFENLCTIEIK----PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~----~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.-.|.||.+...+..|+ -||=.+|..|...+..+...- +.||+|+..-+
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~y--------pvCPvCkTSFK 132 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLY--------PVCPVCKTSFK 132 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccC--------CCCCccccccc
Confidence 34699999998888775 588888999999987776543 89999998754
No 183
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.23 E-value=0.039 Score=58.77 Aligned_cols=51 Identities=29% Similarity=0.716 Sum_probs=39.1
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
..|.+|++ ....+..+|||.+|..|.... .+.... ..||+||..+.....+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~--------i~~~~~-~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKS--------IQQSEN-APCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhc--------cccccC-CCCcHHHHHHHHHHHh
Confidence 67999999 777888899999999999666 222222 3799999998654443
No 184
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.03 E-value=0.11 Score=49.04 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=44.9
Q ss_pred CCccCcccccCC----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecCCccc
Q 012618 320 DVELCCICFENL----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATE 390 (460)
Q Consensus 320 ~~~~C~iC~~~~----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~~~~~ 390 (460)
....|.|..... ..+.+.||||+|+..++..+. ....||+|-.+.+..-+|.+.+..++
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k------------~~~~Cp~c~~~f~~~DiI~Lnp~~ee 174 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK------------KSKKCPVCGKPFTEEDIIPLNPPEEE 174 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc------------ccccccccCCccccCCEEEecCCccH
Confidence 345799988665 346667999999999998881 12569999999998888888665443
No 185
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.91 E-value=0.088 Score=35.69 Aligned_cols=42 Identities=19% Similarity=0.552 Sum_probs=31.1
Q ss_pred cCccccc--CCCccEecCCC-----CccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618 323 LCCICFE--NLCTIEIKPCG-----HQMCAHCTLALCCHKKPDIITAVPEVPACPFCR 373 (460)
Q Consensus 323 ~C~iC~~--~~~~~~~~~Cg-----H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr 373 (460)
.|.||++ ...+....||. |.+=..|..+|...+. ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~---------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG---------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence 4899997 55566678995 6778999999954442 25899995
No 186
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.89 E-value=0.054 Score=54.23 Aligned_cols=54 Identities=30% Similarity=0.632 Sum_probs=43.1
Q ss_pred CCCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 319 SDVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
.+...|.+|.....++.. ..|||.||..|...+-.. ...||.||.++...-.+.
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-----------~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-----------HQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc-----------CcCCcccccccchhhccC
Confidence 344679999999999999 499999999999777211 478999999987655554
No 187
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.87 E-value=0.063 Score=50.64 Aligned_cols=55 Identities=24% Similarity=0.576 Sum_probs=36.4
Q ss_pred CCccCcccccCC--CccEec--CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENL--CTIEIK--PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~--~~~~~~--~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
+...|..|++.. .+..|. |||-++|+-|+..+-.. -...||.||..-+.--+-..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~----------lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN----------LNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh----------ccCCChHhhhhccccceeEE
Confidence 445599999864 344554 56778899999776211 12679999998855444333
No 188
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.11 Score=47.00 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=43.9
Q ss_pred CCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
..-.|.||-+...+ .++.||||++|..|.+.+.... ..||+|-.+.+.--.|.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-----------~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-----------MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-----------ccccCCCCcCcccceEee
Confidence 45689999987776 4567999999999999995554 789999999877666665
No 189
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=92.59 E-value=0.097 Score=52.38 Aligned_cols=58 Identities=17% Similarity=0.405 Sum_probs=42.9
Q ss_pred CCCCCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 314 NTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 314 ~~~~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
...+......|.+|-+...+.+...|.|.||.-|....--. ........||.|-.+.+
T Consensus 529 ~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~------f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 529 LPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVES------FMENNNVTCPVCHIGLS 586 (791)
T ss_pred CCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHh------hhcccCCCCcccccccc
Confidence 34445556789999999999999999999999999655111 12233388999987754
No 190
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.071 Score=51.36 Aligned_cols=44 Identities=25% Similarity=0.648 Sum_probs=32.1
Q ss_pred ccCcccccCCCc---cEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618 322 ELCCICFENLCT---IEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR 373 (460)
Q Consensus 322 ~~C~iC~~~~~~---~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr 373 (460)
-+|.||-+-... ..... |||.|-..|...| ....|..+.||+||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qw--------fe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQW--------FEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHH--------HccCCccCCCCcee
Confidence 469999765544 33333 9999999999999 33444447899999
No 191
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.087 Score=50.87 Aligned_cols=45 Identities=33% Similarity=0.800 Sum_probs=34.6
Q ss_pred ccCcccccCCCc------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 322 ELCCICFENLCT------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 322 ~~C~iC~~~~~~------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
..|.||-+.+.. +..+.|||.+|..|+-.+.... ...||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~----------~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS----------RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc----------eeeccCCCCcc
Confidence 458888766655 4556799999999998884443 37799999996
No 192
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.12 Score=48.06 Aligned_cols=44 Identities=23% Similarity=0.640 Sum_probs=31.0
Q ss_pred cCcccccCC---CccEe--cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 323 LCCICFENL---CTIEI--KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 323 ~C~iC~~~~---~~~~~--~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
.|.+|.... .++++ -||||.+|..|...+ ...+.-.||-|-...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~i----------F~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRI----------FSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHH----------HhcCCCCCCcccchh
Confidence 366666433 23333 499999999999888 455567899997654
No 193
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.097 Score=48.88 Aligned_cols=45 Identities=22% Similarity=0.608 Sum_probs=31.5
Q ss_pred ccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 322 ELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 322 ~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
..|..|--.... -.+.||.|+||..|+... ..+.||.|-..|-++
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~-------------~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD-------------SDKICPLCDDRVQRI 136 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC-------------ccccCcCcccHHHHH
Confidence 467778554433 344799999999999443 236899998887543
No 194
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=90.30 E-value=0.48 Score=35.44 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=31.1
Q ss_pred cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012618 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104 (460)
Q Consensus 48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 104 (460)
.-|..|+..|+.|+++.+++. + .++ ...|..|+...+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~---~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKK---N-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHH---h-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 456777777777777777764 2 111 3467777777777777777775
No 195
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=90.25 E-value=0.57 Score=35.00 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=40.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhc
Q 012618 12 ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68 (460)
Q Consensus 12 ~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 68 (460)
..-|..|+..|+.|+++.+++.+ .+. ...|..|+..-+.+++++|+++
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~--------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KPD--------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-ccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence 34689999999999999999866 221 2579999999999999999997
No 196
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=89.73 E-value=0.2 Score=36.84 Aligned_cols=50 Identities=18% Similarity=0.498 Sum_probs=21.6
Q ss_pred CCccCcccccCCCc-------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 320 DVELCCICFENLCT-------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 320 ~~~~C~iC~~~~~~-------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
..+.|.||-+.... +++..|+-.+|..|+..- .......||-|+++-++.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE----------rkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE----------RKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH----------HHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH----------hhcCcccccccCCCcccc
Confidence 45789999876543 455678888899999877 334458899999765543
No 197
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=89.62 E-value=0.1 Score=50.74 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=0.0
Q ss_pred CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce---eeeEee
Q 012618 332 CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN---LVAARI 384 (460)
Q Consensus 332 ~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~---~~~~~~ 384 (460)
.+.+|.||||++=.+.+..|+....|.... .=...||||-.++.. ++++.|
T Consensus 358 pthaF~PCGHv~SekTa~yWs~i~lPhGt~--~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 358 PTHAFNPCGHVCSEKTAKYWSQIPLPHGTH--AFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CceeecccccccchhhhhhhhcCCCCCCcc--cccccCCcccCcccCCCCceEEEE
Confidence 446778999988888888997666554321 223689999999975 566555
No 198
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.40 E-value=0.15 Score=45.92 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=33.2
Q ss_pred CCccCcccccCC---CccEe--cC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCc--ccccc
Q 012618 320 DVELCCICFENL---CTIEI--KP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACP--FCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~---~~~~~--~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP--~Cr~~ 375 (460)
....|.+|.... .++++ -| |-|.+|.+|..++ ...++..|| -|-.-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRI----------Fs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRI----------FSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHH----------hcCCCCCCCCccHHHH
Confidence 445799998643 33444 36 9999999999998 445567899 67654
No 199
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.14 Score=37.39 Aligned_cols=31 Identities=32% Similarity=0.705 Sum_probs=23.4
Q ss_pred CCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 338 PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 338 ~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
-|.|.|-..|...| .....+...||+||+.-
T Consensus 50 ~C~h~fh~hCI~~w--------l~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 50 YCLHAFHAHCILKW--------LNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHH--------hcCccccccCCcchhee
Confidence 58888888888888 34445557899999863
No 200
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=88.21 E-value=0.66 Score=32.51 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcc
Q 012618 320 DVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPF 371 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~ 371 (460)
....|.|.+..+.+++. ..|||.|....+..+- .......||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i---------~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYI---------QRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC---------TTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHH---------HhcCCCCCCC
Confidence 34679999999999888 5899999999999994 2234478998
No 201
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=88.08 E-value=0.56 Score=51.93 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCCccCcccccCC-------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 319 SDVELCCICFENL-------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 319 ~~~~~C~iC~~~~-------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
...+.|.||-|.. ..+++..||=.+|..|++.- .......||-|+..-++..
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYE----------r~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYE----------RKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhh----------hhcCCccCCccCCchhhhc
Confidence 3556899999874 33777789989999999766 4556688999999987655
No 202
>PLN02436 cellulose synthase A
Probab=87.41 E-value=0.41 Score=52.77 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=40.6
Q ss_pred CCCccCcccccCC-------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 319 SDVELCCICFENL-------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 319 ~~~~~C~iC~~~~-------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
...+.|.||-|.. ..+++-.|+=.+|..|++.- .......||-|++.-++..
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeye----------r~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYE----------RREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhhh----------hhcCCccCcccCCchhhcc
Confidence 3456899999885 33677788888999999666 4556688999999987654
No 203
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=0.46 Score=46.37 Aligned_cols=47 Identities=30% Similarity=0.600 Sum_probs=36.5
Q ss_pred CccCcccccCCCc-----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 321 VELCCICFENLCT-----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 321 ~~~C~iC~~~~~~-----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
...|.||+|.... ++.+-|||.|=..|.++|.. ++. ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~~--------~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KKT--------KMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hhh--------hhhCcccCChh
Confidence 4679999987654 56678999999999999963 322 27899998764
No 204
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=86.18 E-value=0.76 Score=33.95 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=31.2
Q ss_pred ccCccccc-----CCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 322 ELCCICFE-----NLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 322 ~~C~iC~~-----~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
+.|.-|.. ..+.++.--|.|.|-..|..+|..+. ..||++|++-
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-----------~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-----------GVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-----------CCCCCCCcee
Confidence 34555554 23335555799999999999995443 7899999873
No 205
>PLN02189 cellulose synthase
Probab=85.82 E-value=0.63 Score=51.32 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=39.6
Q ss_pred CCCccCcccccCCC-------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 319 SDVELCCICFENLC-------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 319 ~~~~~C~iC~~~~~-------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
...+.|.||.|... .+++..|+=.+|..|++.- .......||-|++.-++..
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye----------r~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE----------RREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhh----------hhcCCccCcccCCchhhcc
Confidence 34568999998743 3566678888899999766 4555688999999987654
No 206
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=1 Score=42.74 Aligned_cols=52 Identities=17% Similarity=0.422 Sum_probs=35.8
Q ss_pred CCCCCCCCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 314 NTSEASDVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 314 ~~~~~~~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
......+...|.+|+....+..++. =|=+||..|.-..-... ..||+--.++
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~-----------~~CPVT~~p~ 345 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY-----------GHCPVTGYPA 345 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc-----------CCCCccCCcc
Confidence 3444556788999998777755543 48889999997774433 6688754443
No 207
>PLN02400 cellulose synthase
Probab=85.16 E-value=0.63 Score=51.53 Aligned_cols=52 Identities=17% Similarity=0.464 Sum_probs=40.4
Q ss_pred CCCccCcccccCCC-------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 319 SDVELCCICFENLC-------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 319 ~~~~~C~iC~~~~~-------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
...+.|.||-|..- .+++..|+=.+|..|++.- .......||-|+..-++.-
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYE----------RkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYE----------RKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhee----------cccCCccCcccCCcccccc
Confidence 34568999998743 3677788888999999655 5556689999999988664
No 208
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=84.86 E-value=0.47 Score=53.18 Aligned_cols=61 Identities=23% Similarity=0.520 Sum_probs=39.0
Q ss_pred CCCCCccCcccccCCCc---cEecCCCCccchhhHHHHhh--cCCCCcccCCCCCCCCcccccccceee
Q 012618 317 EASDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCC--HKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~--~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
.+.....|+||+...-. ...+.|+|.|-.+|..+..- ++.|.. .-+-..||+|..+|...+
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRI---tF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRI---TFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCee---EEeeeecccccchhhhHH
Confidence 34455789999975433 44578999997777665521 222221 123367999999996654
No 209
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=84.42 E-value=0.5 Score=46.30 Aligned_cols=32 Identities=25% Similarity=0.594 Sum_probs=28.3
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHH
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLAL 351 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~ 351 (460)
++..|.||..-+.++..+||+|-.|..|+...
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 34569999999999999999999999999654
No 210
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.77 E-value=0.4 Score=46.37 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=36.6
Q ss_pred ccCcccccCC----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 322 ELCCICFENL----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 322 ~~C~iC~~~~----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
..|..|-+.. .....+||.|.|-.+|+..+--.+ ....||-||+-+.++-
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n---------~~rsCP~CrklrSs~~ 419 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN---------GTRSCPNCRKLRSSMK 419 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC---------CCCCCccHHHHHhhcc
Confidence 4699998643 456778999999999998774333 2378999996665443
No 211
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=83.15 E-value=0.33 Score=46.14 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee-eEeecCC
Q 012618 320 DVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV-AARIINS 387 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~-~~~~~~~ 387 (460)
....|.+|..=..+... ..|-|.||..|+...-..+ ..||.|...|-... ..+++.+
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~-----------~~CP~C~i~ih~t~pl~ni~~D 72 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES-----------KYCPTCDIVIHKTHPLLNIRSD 72 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh-----------ccCCccceeccCccccccCCcc
Confidence 34679999887777555 5699999999998774333 78999999997775 3344443
No 212
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.55 E-value=0.75 Score=38.04 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=25.8
Q ss_pred CccCcccccCCCc---cEecCCCC------ccchhhHHHHh
Q 012618 321 VELCCICFENLCT---IEIKPCGH------QMCAHCTLALC 352 (460)
Q Consensus 321 ~~~C~iC~~~~~~---~~~~~CgH------~~C~~C~~~~~ 352 (460)
..+|.||++...+ ++..+||- +||..|..+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 3569999987665 77788986 66999999993
No 213
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=81.31 E-value=1.6 Score=48.32 Aligned_cols=51 Identities=20% Similarity=0.491 Sum_probs=40.0
Q ss_pred CCccCcccccCCC-------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 320 DVELCCICFENLC-------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 320 ~~~~C~iC~~~~~-------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
..+.|.||-|... .+++..|+-.+|..|++.- .......||-|+++-++..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye----------~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYE----------RSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhh----------hhcCCccCCccCCchhhhc
Confidence 5678999998743 3677788888999999665 4556689999999987654
No 214
>PHA03096 p28-like protein; Provisional
Probab=81.18 E-value=0.69 Score=43.96 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=32.6
Q ss_pred ccCcccccCCCc--------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 322 ELCCICFENLCT--------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 322 ~~C~iC~~~~~~--------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
..|.||++.... -....|-|.||..|...|-.... .....+.||.||..+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~-----~~e~~~~c~~~~~~~~ 237 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL-----YKETEPENRRLNTVIV 237 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh-----hcccCccccchhhHHH
Confidence 459999986543 23347999999999999944331 1223345555555543
No 215
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=80.65 E-value=0.74 Score=36.79 Aligned_cols=30 Identities=27% Similarity=0.666 Sum_probs=23.7
Q ss_pred CCCccCcccccCCCccE--ecCCCCccchhhH
Q 012618 319 SDVELCCICFENLCTIE--IKPCGHQMCAHCT 348 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~--~~~CgH~~C~~C~ 348 (460)
.+...|.+|.....+.+ +.||||.+...|.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCI 107 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccc
Confidence 34567999999887644 4799999988886
No 216
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=80.35 E-value=2.1 Score=40.41 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=29.1
Q ss_pred ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc---eeeeEee
Q 012618 333 TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA---NLVAARI 384 (460)
Q Consensus 333 ~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~---~~~~~~~ 384 (460)
+..|.||||++=.+=..+|-..-.| --...=...||||-..+. .++++-|
T Consensus 372 thaF~PCGHv~sekt~~YWs~iplP--hGT~~f~a~CPFC~~~L~ge~~~ikliF 424 (429)
T KOG3842|consen 372 THAFNPCGHVCSEKTVKYWSQIPLP--HGTHAFHAACPFCATQLAGEQGYIKLIF 424 (429)
T ss_pred ccccCCcccccchhhhhHhhcCcCC--CccccccccCcchhhhhccCCceEEEEE
Confidence 4567799997666666666222211 111223368999998874 3444444
No 217
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.63 E-value=1.9 Score=38.56 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=37.7
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
..+|.+=+...-.+. +-|-|.|-+.|...+- -.-|.+..+...+||-|.++|.-
T Consensus 53 C~LC~t~La~gdt~R-LvCyhlfHW~Clnera---A~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 53 CRLCNTPLASGDTTR-LVCYHLFHWKCLNERA---ANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CceeCCccccCccee-ehhhhhHHHHHhhHHH---hhCCCcCCCCcccCCCCCCccCC
Confidence 344555555544444 4599999999997772 23355677888999999999843
No 218
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.60 E-value=2.5 Score=41.45 Aligned_cols=56 Identities=20% Similarity=0.466 Sum_probs=31.4
Q ss_pred CCccCcccccCCCccEec-CC----------------CC-----ccchhhHHHHhhc--CCCCcccCCCCCCCCcccccc
Q 012618 320 DVELCCICFENLCTIEIK-PC----------------GH-----QMCAHCTLALCCH--KKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~-~C----------------gH-----~~C~~C~~~~~~~--~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
+.+.|--|+....+++.. -| .. +-|-.|.-+|=.. ....+.+=-.+.-.||.||+.
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 455677788777776653 23 22 2277777777221 111121112455789999986
No 219
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=79.44 E-value=0.93 Score=43.17 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=28.4
Q ss_pred CCccCcccccCCCccEecCCCCccchhhH---HHH--------hhcCCCCcccCCCCCCCCcccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCT---LAL--------CCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~---~~~--------~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..++|.||-|+...... |-.-|.+|- .+. |..+...-.++. ..+.||+||=.
T Consensus 14 l~ElCPVCGDkVSGYHY---GLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkT-qRKRCP~CRFQ 76 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGYHY---GLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKT-QRKRCPSCRFQ 76 (475)
T ss_pred cccccccccCcccccee---eeeehhhhhhHHHHHhhcCcceecccccccccchH-hhccCCchhHH
Confidence 45789999998876433 112355553 222 332222222222 33789999953
No 220
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=0.71 Score=47.62 Aligned_cols=33 Identities=33% Similarity=0.736 Sum_probs=25.8
Q ss_pred CCccCcccccCCCc----cEecCCCCccchhhHHHHh
Q 012618 320 DVELCCICFENLCT----IEIKPCGHQMCAHCTLALC 352 (460)
Q Consensus 320 ~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~ 352 (460)
+...|.||+..+.. ++++-|||..|..|...+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly 46 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY 46 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh
Confidence 34569999765544 6778899999999998884
No 221
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.41 E-value=1.2 Score=41.37 Aligned_cols=57 Identities=19% Similarity=0.452 Sum_probs=39.3
Q ss_pred CCccCcccccCCCccEecCC----CCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 320 DVELCCICFENLCTIEIKPC----GHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~C----gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
....|.+|-++..++.|.-| .|.||..|...-.........---+..-+||+=-+.|
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 34568889999999999989 7899999997764444333222235557788755443
No 222
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.21 E-value=0.22 Score=46.42 Aligned_cols=55 Identities=25% Similarity=0.575 Sum_probs=31.7
Q ss_pred cCcccccCCCc---cEecCCCCccchhhHHHH---hhcCCCCcc---------cCCCCCCCCcccccccc
Q 012618 323 LCCICFENLCT---IEIKPCGHQMCAHCTLAL---CCHKKPDII---------TAVPEVPACPFCRCSIA 377 (460)
Q Consensus 323 ~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~---~~~~~~~~~---------~~~~~~~~CP~Cr~~i~ 377 (460)
-|+|||=.+.+ +...+|-|.|-..|.-+. |.+....-. .+.+....||+||-+|.
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 46666654443 566899999955776544 222211100 11233356999999994
No 223
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.70 E-value=1.5 Score=42.87 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=32.2
Q ss_pred ccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 322 ELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 322 ~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..|+|-.++..+ +..+.|||+.|..=+.++-. .....-.||+|=..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~--------ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSK--------NGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhh--------CCCeeeeCCCCCcc
Confidence 469987665544 56678999999988888822 22224789999654
No 224
>PLN02195 cellulose synthase A
Probab=77.60 E-value=2 Score=47.35 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=38.4
Q ss_pred CCCccCcccccCC-------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 319 SDVELCCICFENL-------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 319 ~~~~~C~iC~~~~-------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
+..+.|.||-|.. ..+++..|+-.+|..|++.- ...+...||-|+..-.
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeye----------r~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYE----------IKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCCCccccchhhhh----------hhcCCccCCccCCccc
Confidence 4456899999843 34777889999999999766 4556688999999876
No 225
>PHA02862 5L protein; Provisional
Probab=76.92 E-value=2.2 Score=35.64 Aligned_cols=45 Identities=18% Similarity=0.433 Sum_probs=33.1
Q ss_pred ccCcccccCCCccEecCCCC-----ccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 322 ELCCICFENLCTIEIKPCGH-----QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH-----~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
+.|-||.+..... ..||+- .+-+.|..+|..++ +...||+|+.+-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S---------~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYS---------KKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcC---------CCcCccCCCCeE
Confidence 4699999886433 578865 33789999996443 337899999985
No 226
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=76.19 E-value=3.3 Score=35.30 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCccCcccccCCCccEecCCCC-----ccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGH-----QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH-----~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
....|-||.+.... ...||.- .+-.+|..+|...+ +...||+|+.+-
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s---------~~~~CeiC~~~Y 58 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTS---------KNKSCKICNGPY 58 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcC---------CCCcccccCCeE
Confidence 34579999988653 4467754 23689999996644 347899999874
No 227
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=74.81 E-value=21 Score=34.63 Aligned_cols=270 Identities=11% Similarity=0.060 Sum_probs=150.2
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCC
Q 012618 5 MSCRERSESALFVAVENGDLQMIEAMVEA-DPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQ 83 (460)
Q Consensus 5 ~~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~ 83 (460)
+..+..|--.|..+...++.+....+++. .+.+.....+..|.-.+...+..+..+-...+++........-..+..|.
T Consensus 15 l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~ 94 (322)
T cd07920 15 FAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGC 94 (322)
T ss_pred ccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhH
Confidence 44566677778888888888888888775 33333444456677788888888876655555544210111113456666
Q ss_pred cHHHHHHHcCCHHHHHHHHHc--CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618 84 TPLMVAAMNGKLSCVKKLIES--GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161 (460)
Q Consensus 84 tpL~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g 161 (460)
-.+..+...+..+-...+++. +.-..-..|..|...+..+......+..+.+++.-.... .-=..+..|
T Consensus 95 ~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~---------~~l~~~~~G 165 (322)
T cd07920 95 RVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNC---------VALSTHPYG 165 (322)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHH---------HHHHcCccc
Confidence 666666666665444444432 111223445678888888877777766666654422100 011245677
Q ss_pred CCHHHHHHHcCCHH----HHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc---CCCCCCCCCCCCCH
Q 012618 162 ATPLHLAARQGWSE----CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW---GADRVQPDAFGRIP 234 (460)
Q Consensus 162 ~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~tp 234 (460)
...+.........+ +++.|+.+- ..-..|..|+..+..+...+..+..+.+++. ..-.-..+..|...
T Consensus 166 ~~vvq~~l~~~~~~~~~~l~~~l~~~~-----~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~V 240 (322)
T cd07920 166 CRVIQRCLEHCSEEQREPLLEEILEHA-----LELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNV 240 (322)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHH-----HHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHH
Confidence 77777777765544 333333321 1223466788888888888776544444432 11112456778777
Q ss_pred HHHHHHhCh----HHHHHhhCCCCCC-CCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhh
Q 012618 235 YAIALKYKH----QACAALLNPSSAE-PLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAIL 294 (460)
Q Consensus 235 L~~A~~~~~----~~i~~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll 294 (460)
+..+..... ..+++-|+....+ +.. .....++.|.-.++.++........+.++
T Consensus 241 ve~~l~~~~~~~~~~ii~~l~~~~~~~~~l------~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~ 299 (322)
T cd07920 241 VEKCLKHASKEERELIIDEILASGNETSAL------DTLMKDQYGNYVIQTALDVAKEEQRELLV 299 (322)
T ss_pred HHHHHHHCCHHHHHHHHHHHhcCCCchhHH------HHHhCCCcccHHHHHHHHhCCHHHHHHHH
Confidence 777777654 3455555443310 000 11123556666666666665544433333
No 228
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=73.99 E-value=2.8 Score=27.76 Aligned_cols=41 Identities=22% Similarity=0.606 Sum_probs=23.5
Q ss_pred cCcccccCCCccEecCC-CCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 323 LCCICFENLCTIEIKPC-GHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 323 ~C~iC~~~~~~~~~~~C-gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
.|+-|+-.....+- | -|..|-.|.-.+-.. +..||+|..++
T Consensus 4 nCKsCWf~~k~Li~--C~dHYLCl~CLt~ml~~-----------s~~C~iC~~~L 45 (50)
T PF03854_consen 4 NCKSCWFANKGLIK--CSDHYLCLNCLTLMLSR-----------SDRCPICGKPL 45 (50)
T ss_dssp ---SS-S--SSEEE---SS-EEEHHHHHHT-SS-----------SSEETTTTEE-
T ss_pred cChhhhhcCCCeee--ecchhHHHHHHHHHhcc-----------ccCCCcccCcC
Confidence 47788776666543 4 588899999777333 38899999876
No 229
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.69 E-value=2.5 Score=44.74 Aligned_cols=52 Identities=27% Similarity=0.591 Sum_probs=38.3
Q ss_pred cCcccccCCCccEecCCCC-ccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 323 LCCICFENLCTIEIKPCGH-QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 323 ~C~iC~~~~~~~~~~~CgH-~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
-|.||-........-.||| .+|..|..++-.-. ...-....||+||..+..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~-----~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFEL-----NNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhc-----ccccccccCcccccceeee
Confidence 4999999999999999999 78999998882111 1112236689999976544
No 230
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=71.68 E-value=2 Score=40.12 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=30.9
Q ss_pred ccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618 322 ELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRC 374 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 374 (460)
..|..|-.-.++.+-. .|+|.||.+|+..-.- ..-..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~----------dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALL----------DSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhh----------hccccCCCccc
Confidence 4588887777776665 6899999999964311 12278999987
No 231
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.79 E-value=2.4 Score=33.03 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=26.2
Q ss_pred CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 332 CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 332 ~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
+.++---|.|.|-..|..+|.... ..||+|.++
T Consensus 74 C~VaWG~CNHaFH~hCisrWlktr-----------~vCPLdn~e 106 (114)
T KOG2930|consen 74 CTVAWGVCNHAFHFHCISRWLKTR-----------NVCPLDNKE 106 (114)
T ss_pred eEEEeeecchHHHHHHHHHHHhhc-----------CcCCCcCcc
Confidence 345556899999888999996555 789999875
No 232
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=68.60 E-value=4.5 Score=38.22 Aligned_cols=50 Identities=12% Similarity=-0.023 Sum_probs=39.4
Q ss_pred CCccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 320 DVELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
....|-+|-...-.....||+|-+ |..|+-. .-.+.||+|-+....++.+
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~-------------s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA-------------SASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhc-------------ccCCccccccccceeeeec
Confidence 345799999999999999999955 9999941 2238899999887766654
No 233
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=66.87 E-value=4.1 Score=39.07 Aligned_cols=44 Identities=32% Similarity=0.772 Sum_probs=32.7
Q ss_pred CccCcccccCC----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 321 VELCCICFENL----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 321 ~~~C~iC~~~~----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
...|.+|.+.. .....-|||+..|..|....|.++ ..||+||.+
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~-----------~~~~~~rk~ 296 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGD-----------GRCPGCRKP 296 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccC-----------CCCCccCCc
Confidence 36799998754 223445789999999997776665 789999943
No 234
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.50 E-value=3.1 Score=41.61 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=28.9
Q ss_pred CccCcccccCCCcc----EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCc
Q 012618 321 VELCCICFENLCTI----EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACP 370 (460)
Q Consensus 321 ~~~C~iC~~~~~~~----~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP 370 (460)
.+.|.||+...... ....|+|.||..|........ ......+.||
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~-----~~~~~~~~C~ 194 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK-----LLSGTVIRCP 194 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh-----hccCCCccCC
Confidence 45699999333321 235699999999998774333 2334556675
No 235
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=63.72 E-value=1.9 Score=45.46 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=37.1
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
..|.||+........+.|-|.||..|+... .........||+|+..++
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~--------f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIFLKFCLNKL--------FESKKGPKQCALCKSDIE 69 (684)
T ss_pred ccCCceeEEeeccchhhhhHHHHhhhhhce--------eeccCccccchhhhhhhh
Confidence 459999999999988999999999998555 122223578999996653
No 236
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=62.86 E-value=3.9 Score=43.93 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=39.8
Q ss_pred CccCcccccCCCccE----ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 321 VELCCICFENLCTIE----IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~----~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.-+|+||.+...... ...|.|+|=..|+..|... .....+..+.||.|+..-.
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs----~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS----SEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH----hhhccCccccCCcccchhc
Confidence 346999999876633 3468999999999999776 2334567799999995544
No 237
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=60.26 E-value=69 Score=30.89 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=117.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEAD-PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
+..|...+......+..+....+++.- ..+.....+..|.-.+..+...+..+....+++........-..|..|...+
T Consensus 54 ~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vv 133 (322)
T cd07920 54 DPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVI 133 (322)
T ss_pred CccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHH
Confidence 344555566666666666555444431 2333334455666677777777665544444443111122224567788888
Q ss_pred HHHHHcCCHHHHHHHHHcC--CccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618 87 MVAAMNGKLSCVKKLIESG--AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~ 164 (460)
..+......+..+.+++.= .-..-..+..|...+.........+..+.|++.-... .. -=..|..|...
T Consensus 134 q~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~-~~--------~L~~d~~Gn~v 204 (322)
T cd07920 134 QKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEH-AL--------ELVQDQFGNYV 204 (322)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHH-HH--------HHhcCCchhhH
Confidence 7777777666555554321 1111233456777777777665554444343321110 00 12357889999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCH----HHHHHHHHcCC-----CCCCCCCCCCCHH
Q 012618 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL----ECIRELLAWGA-----DRVQPDAFGRIPY 235 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~----~~v~~Ll~~ga-----d~~~~d~~G~tpL 235 (460)
+..+...+..+..+.+++.-.. +...-..+..|...+..+...+.. .+++.|+.... .--..|..|...+
T Consensus 205 vq~~l~~~~~~~~~~i~~~l~~-~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Vi 283 (322)
T cd07920 205 VQHVLELGDPDDTSRIIEKLLG-NIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVI 283 (322)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-HHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHH
Confidence 9999988876544444433210 001123456787888877777653 34444443321 1113455565555
Q ss_pred HHHHHhC
Q 012618 236 AIALKYK 242 (460)
Q Consensus 236 ~~A~~~~ 242 (460)
..+....
T Consensus 284 q~~l~~~ 290 (322)
T cd07920 284 QTALDVA 290 (322)
T ss_pred HHHHHhC
Confidence 5554433
No 238
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=57.34 E-value=2.4 Score=42.24 Aligned_cols=58 Identities=24% Similarity=0.587 Sum_probs=42.7
Q ss_pred CccCcccccCCCccEecCCCCc---cchhhH-----------HHHhhcCCCCcccCCCCCCCCccccccc---ceeeeEe
Q 012618 321 VELCCICFENLCTIEIKPCGHQ---MCAHCT-----------LALCCHKKPDIITAVPEVPACPFCRCSI---ANLVAAR 383 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~---~C~~C~-----------~~~~~~~~~~~~~~~~~~~~CP~Cr~~i---~~~~~~~ 383 (460)
..+|.||-|+.. |.|. -|..|- .+.|--+|..|.++..+ ..|.+||=.- .+||+-.
T Consensus 269 e~~CAVCgDnAa------CqHYGvRTCEGCKGFFKRTVQKnaKYvClanKnCPVDKRrR-nRCQyCRfQKCL~VGMVKEV 341 (605)
T KOG4217|consen 269 EGLCAVCGDNAA------CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRR-NRCQYCRFQKCLAVGMVKEV 341 (605)
T ss_pred cceeeecCChHH------hhhcCccccccchHHHHHHHhcCCeeEeecCCCCCcchhhh-hhchhhhHhHHHHhhhhhhh
Confidence 578999999863 7773 277774 45688899999888776 7899999543 5666555
Q ss_pred ec
Q 012618 384 II 385 (460)
Q Consensus 384 ~~ 385 (460)
++
T Consensus 342 VR 343 (605)
T KOG4217|consen 342 VR 343 (605)
T ss_pred ee
Confidence 53
No 239
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=55.57 E-value=4.3 Score=38.27 Aligned_cols=47 Identities=28% Similarity=0.651 Sum_probs=35.9
Q ss_pred CcccccC----CCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 324 CCICFEN----LCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 324 C~iC~~~----~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
|.||.+. ...+..++|||.+=.+|....+++. -.||+|.. +..+..+
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-----------y~CP~C~~-~~d~~~~ 211 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-----------YTCPICSK-PGDMSHY 211 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccC-----------CCCCcccc-hHHHHHH
Confidence 8888754 4457778999988889999987776 56999999 6554443
No 240
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=54.68 E-value=1.9 Score=35.32 Aligned_cols=45 Identities=18% Similarity=0.457 Sum_probs=30.2
Q ss_pred CccCcccccCC-----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 321 VELCCICFENL-----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 321 ~~~C~iC~~~~-----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
...|.+|...+ ....+..|+|.+|..|... ........|.+|+..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~----------~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY----------SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE----------TSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc----------CCCCCCEEChhhHHH
Confidence 34699998754 3366778999999999833 123445789999875
No 241
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.24 E-value=11 Score=34.43 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcC
Q 012618 317 EASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHK 355 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~ 355 (460)
....+.-|..|+...+++++.|=||+||..|++..--+.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 345678899999999999999999999999997774443
No 242
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=52.67 E-value=8.5 Score=26.10 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=18.7
Q ss_pred cCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 323 LCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 323 ~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
.|.+...+...++- ..|.|.-|..=...+ ..+ .......||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl-~~~------~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQCFDLESFL-ESN------QRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS--EEHHHHH-HHH------HHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccceECHHHHH-HHh------hccCCeECcCCcCc
Confidence 47777777766555 689998775432222 111 11122889999874
No 243
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=16 Score=37.49 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=41.7
Q ss_pred CCccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCC-CCCc--ccccccceeeeEee
Q 012618 320 DVELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEV-PACP--FCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~-~~CP--~Cr~~i~~~~~~~~ 384 (460)
....|.||.+.... +...+|||.||..|+...-..+... .+.. ..|| -|+..+....+..+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~----~~~~~i~cp~~~C~a~v~~~~i~~~ 133 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHE----GEEAKIKCPAHGCPALVGEDTVEKL 133 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeec----cccccccCCCCCccccCCCceeeee
Confidence 44569999998885 7778999999999998864333211 1221 3444 57887776666555
No 244
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.63 E-value=9.6 Score=35.01 Aligned_cols=65 Identities=9% Similarity=0.220 Sum_probs=44.7
Q ss_pred CCCCCCCccCcccc----cCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecCCccc
Q 012618 315 TSEASDVELCCICF----ENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATE 390 (460)
Q Consensus 315 ~~~~~~~~~C~iC~----~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~~~~~ 390 (460)
.+.......|.|=- ...+..+..+|||+|=.+=...+ ....|++|......--+|.+...+|+
T Consensus 105 ~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-------------kas~C~~C~a~y~~~dvIvlNg~~E~ 171 (293)
T KOG3113|consen 105 DDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-------------KASVCHVCGAAYQEDDVIVLNGTEED 171 (293)
T ss_pred cccccceeecccccceecceEEEEEEeccceeccHHHHHHh-------------hhccccccCCcccccCeEeeCCCHHH
Confidence 34444556788733 34455667899999976666555 24679999999988888887766555
Q ss_pred cC
Q 012618 391 LD 392 (460)
Q Consensus 391 ~~ 392 (460)
.+
T Consensus 172 ~d 173 (293)
T KOG3113|consen 172 VD 173 (293)
T ss_pred HH
Confidence 44
No 245
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=51.46 E-value=8.9 Score=24.88 Aligned_cols=17 Identities=18% Similarity=0.636 Sum_probs=12.5
Q ss_pred CCCCCCccccc-ccceee
Q 012618 364 PEVPACPFCRC-SIANLV 380 (460)
Q Consensus 364 ~~~~~CP~Cr~-~i~~~~ 380 (460)
.....||.|.+ .+.+++
T Consensus 24 ~~~~~CP~Cg~~~~~r~~ 41 (42)
T PF09723_consen 24 DDPVPCPECGSTEVRRVI 41 (42)
T ss_pred CCCCcCCCCCCCceEEec
Confidence 45588999999 666654
No 246
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=48.41 E-value=11 Score=40.30 Aligned_cols=59 Identities=19% Similarity=0.420 Sum_probs=36.2
Q ss_pred ccCcccccCCCc---------cEecCCCCccchhhHHHHhhc-----CCCCcccCCCCCCCCcccccccceee
Q 012618 322 ELCCICFENLCT---------IEIKPCGHQMCAHCTLALCCH-----KKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 322 ~~C~iC~~~~~~---------~~~~~CgH~~C~~C~~~~~~~-----~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
..|..|...+.. --+..||+.||..|....... .++.+....+..+.|-.|-...+.+.
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~EnLl 533 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYETVS 533 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHHhHH
Confidence 569999998853 336789999999998544321 11122222233468999985554433
No 247
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.33 E-value=12 Score=30.80 Aligned_cols=54 Identities=24% Similarity=0.547 Sum_probs=29.5
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccC-CCCCCCCcccccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITA-VPEVPACPFCRCSIA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~-~~~~~~CP~Cr~~i~ 377 (460)
+...|.||... .....|||. |.-|-.+.|.+......-+ ....+.|-.||....
T Consensus 64 ddatC~IC~KT---KFADG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 64 DDATCGICHKT---KFADGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred cCcchhhhhhc---ccccccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 45679999742 233579994 4444444443322211111 234478999987754
No 248
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.11 E-value=9 Score=31.03 Aligned_cols=28 Identities=29% Similarity=0.683 Sum_probs=20.4
Q ss_pred ccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 342 QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 342 ~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
-||..|.... ...||+|..+|.+-..+.
T Consensus 29 afcskcgeat--------------i~qcp~csasirgd~~ve 56 (160)
T COG4306 29 AFCSKCGEAT--------------ITQCPICSASIRGDYYVE 56 (160)
T ss_pred HHHhhhchHH--------------HhcCCccCCcccccceee
Confidence 3588887555 378999999997665553
No 249
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=46.59 E-value=4.7 Score=45.48 Aligned_cols=47 Identities=30% Similarity=0.682 Sum_probs=36.2
Q ss_pred CCCccCcccccCCCccE-ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 319 SDVELCCICFENLCTIE-IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~-~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
.....|.||.+-.++.. ..-|||.+|..|...|-.+. ..||+|.+.+
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-----------s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-----------SRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-----------ccCcchhhhh
Confidence 34458999999887433 35699999999999995555 7899998654
No 250
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=43.53 E-value=9.7 Score=36.30 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=35.3
Q ss_pred CCCCCCccCcccccC-CCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 316 SEASDVELCCICFEN-LCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 316 ~~~~~~~~C~iC~~~-~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...++...|++|... +.- --+..||+.||..|.... ..-+.........|+.|-.....
T Consensus 163 ~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~----~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 163 LPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNR----FLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred cCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCc----ccccccCCCCceecHHHHHHHhc
Confidence 334566789999873 322 234579999998776332 11122222333489999888765
No 251
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=42.63 E-value=6.9 Score=37.04 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCccCcccccCCCccEecCCCC-ccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCTIEIKPCGH-QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH-~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
....|.+|+.+..-....+||| +||-.|+-..|-. +.+.||+|..-..+...+.-
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~k----------ra~s~eie~ta~~ra~~i~d 190 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVK----------RARSCEIEQTAVTRAGQIHD 190 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhh----------hccccchhhhhhhhhhcccc
Confidence 4456999999999999999999 4599997444433 33679999998877665543
No 252
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=41.93 E-value=12 Score=24.93 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=23.0
Q ss_pred CcccccCCCc--cEecCCCC-----ccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 324 CCICFENLCT--IEIKPCGH-----QMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 324 C~iC~~~~~~--~~~~~CgH-----~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
|.||++.... ....||+- .+-..|+.+|-..+ ....|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~---------~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRES---------GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHH---------T-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhc---------CCCcCCCC
Confidence 6788876544 34578754 33678999995542 22569887
No 253
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.39 E-value=20 Score=37.86 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=49.1
Q ss_pred HHHhhhccccCCCCCCCCCCccCC-CCCCCCCCccCcccccCCCcc----EecCCCCccchhhHHHHhhcCCCCcccCCC
Q 012618 290 EKAILNETICSVPSTSPSDAEVDD-NTSEASDVELCCICFENLCTI----EIKPCGHQMCAHCTLALCCHKKPDIITAVP 364 (460)
Q Consensus 290 ~~~ll~~~~~~~~s~~~s~~~~~~-~~~~~~~~~~C~iC~~~~~~~----~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~ 364 (460)
...++......+|.....+...+. ......+.+.|..|-..+..+ -+.-||.+||..|....|..-..-. ..
T Consensus 133 t~~~lk~~g~~Fpe~~e~d~mf~~~~~pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi---~~ 209 (634)
T KOG1818|consen 133 TYQKLKGGGHVFPELDENDAMFDAETAPDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGI---EK 209 (634)
T ss_pred HHHHHhcCCccccccccchhhhcccCCcccccccccceeeeeeeeccccccccccchhhccCccccccCcccccc---cc
Confidence 344455555556655544433322 334445567899998766553 3457999999999976654433221 12
Q ss_pred CCCCCccccccc
Q 012618 365 EVPACPFCRCSI 376 (460)
Q Consensus 365 ~~~~CP~Cr~~i 376 (460)
..++|-.|-...
T Consensus 210 ~VRVCd~C~E~l 221 (634)
T KOG1818|consen 210 PVRVCDSCYELL 221 (634)
T ss_pred cceehhhhHHHh
Confidence 238899994333
No 254
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=41.33 E-value=26 Score=37.79 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=37.0
Q ss_pred CCCccCccccc--CCCccEecCCCC-----ccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFE--NLCTIEIKPCGH-----QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~--~~~~~~~~~CgH-----~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||-. .+-++.+.||.. .+-++|...|-.++ ....|-+|.-++.=
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s---------~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECS---------GTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcC---------CCcceeeecceeee
Confidence 34578999874 455688889976 33789999995544 23789999988743
No 255
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=40.76 E-value=12 Score=27.13 Aligned_cols=31 Identities=26% Similarity=0.719 Sum_probs=16.0
Q ss_pred CCCccCcccccCCCc----cEecCCCCccchhhHH
Q 012618 319 SDVELCCICFENLCT----IEIKPCGHQMCAHCTL 349 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~ 349 (460)
.+...|.+|...+.. .....||+.+|..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 345679999988844 3345799999999883
No 256
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=20 Score=31.04 Aligned_cols=59 Identities=19% Similarity=0.354 Sum_probs=34.9
Q ss_pred CCccCcccccC-----CCccEe--cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 320 DVELCCICFEN-----LCTIEI--KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 320 ~~~~C~iC~~~-----~~~~~~--~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
+...|.||..- ..+.++ ..||..|-.-|.-.|.+.-.........--..||+|..+|+-
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 34568888742 122222 468888877788777544332221122223469999999864
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=40.32 E-value=45 Score=34.12 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=9.3
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 012618 15 LFVAVENGDLQMIEAMVE 32 (460)
Q Consensus 15 L~~Aa~~g~~~~vk~Ll~ 32 (460)
+..|+.+++.+.|..+++
T Consensus 268 fk~av~~~d~~~v~~~i~ 285 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIA 285 (443)
T ss_dssp HHHHHHTT-HHH-----H
T ss_pred HHHHHHcCChhhhhhhhh
Confidence 567888888888655554
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.46 E-value=1.8e+02 Score=31.96 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=33.0
Q ss_pred ccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 322 ELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 322 ~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
..|..|--..-- +|..-|||.+-.+|.. .....||-|+....+.+.++
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e--------------~~~~~CP~C~~e~~~~m~l~ 889 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE--------------DKEDKCPKCLPELRGVMDLK 889 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc--------------cCcccCCccchhhhhhHHHH
Confidence 468888665443 3446699999999984 12267999999766655543
No 259
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=38.63 E-value=14 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.653 Sum_probs=8.5
Q ss_pred CCCCCCCCcccccccce
Q 012618 362 AVPEVPACPFCRCSIAN 378 (460)
Q Consensus 362 ~~~~~~~CP~Cr~~i~~ 378 (460)
....+..||+|...|.+
T Consensus 20 ~S~~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQ 36 (54)
T ss_dssp TTS--EE-TTT--EESS
T ss_pred ccCCCCCCCcchhhccc
Confidence 34556899999987754
No 260
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=38.28 E-value=9.5 Score=23.03 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=13.4
Q ss_pred CccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 341 HQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 341 H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
|.||..|.... ..........||-|...
T Consensus 3 ~rfC~~CG~~t-------~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPT-------KPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BE-------EE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccc-------cCCCCcCEeECCCCcCE
Confidence 67788887433 11223445788888764
No 261
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.07 E-value=13 Score=31.68 Aligned_cols=28 Identities=21% Similarity=0.640 Sum_probs=21.6
Q ss_pred CccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 341 HQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 341 H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
+.||.+|.... ...||-|..+|.+...+
T Consensus 28 ~~fC~kCG~~t--------------I~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 28 EKFCSKCGAKT--------------ITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHHHhhHHH--------------HHHCcCCCCCCCCceec
Confidence 35799999777 37899999999766444
No 263
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=37.07 E-value=17 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=16.6
Q ss_pred CCCcccccccceeeeEeecC
Q 012618 367 PACPFCRCSIANLVAARIIN 386 (460)
Q Consensus 367 ~~CP~Cr~~i~~~~~~~~~~ 386 (460)
..|++|+++|...+.+....
T Consensus 2 ~iCvvCK~Pi~~al~v~T~~ 21 (53)
T PHA02610 2 KICVVCKQPIEKALVVETEK 21 (53)
T ss_pred ceeeeeCCchhhceEEecCC
Confidence 46999999999998887643
No 264
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=36.45 E-value=16 Score=20.34 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=8.2
Q ss_pred CCCCCCccccccc
Q 012618 364 PEVPACPFCRCSI 376 (460)
Q Consensus 364 ~~~~~CP~Cr~~i 376 (460)
.....||.|-.+|
T Consensus 11 ~~~~fC~~CG~~l 23 (23)
T PF13240_consen 11 DDAKFCPNCGTPL 23 (23)
T ss_pred CcCcchhhhCCcC
Confidence 4456788776653
No 265
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.77 E-value=21 Score=33.92 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=29.9
Q ss_pred ccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 322 ELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 322 ~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..|.|-.+...+ ++.+.|||+.=..=+.++. ......-.||+|-..
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS--------~nG~~~FKCPYCP~~ 385 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLS--------QNGVLSFKCPYCPEM 385 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHh--------hcCcEEeeCCCCCcc
Confidence 368875544333 6778899998777776662 222234789999654
No 266
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=34.77 E-value=3.4 Score=42.70 Aligned_cols=47 Identities=21% Similarity=0.136 Sum_probs=24.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCH
Q 012618 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS 174 (460)
Q Consensus 116 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~ 174 (460)
..++++........+.+..++..... ...++..|.|+||.+...++.
T Consensus 136 ~~~~~~~~~s~~~~~~~~~~l~~~~~------------~~~~~~~g~t~L~~tl~~~~~ 182 (503)
T KOG0513|consen 136 LNLALRILVSGDKYSGAEVLLTKYEI------------ADAREVLGNTKLHLTLTKENL 182 (503)
T ss_pred cccceeeeecCccccceeeccccccc------------chhhhhcCCceeeeeccCCCc
Confidence 44555555555555555444443222 334445666777776666554
No 267
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.08 E-value=9.6 Score=36.58 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=23.5
Q ss_pred CccCcccccCCCccEecCC---C--CccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 321 VELCCICFENLCTIEIKPC---G--HQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~C---g--H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
...|.||-..+.-.++..= | +..|.-|...| .-....||+|-..-..-+.+
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W-----------~~~R~~Cp~Cg~~~~~~l~~ 227 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEW-----------RFVRIKCPYCGNTDHEKLEY 227 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EE-----------E--TTS-TTT---SS-EEE-
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCee-----------eecCCCCcCCCCCCCcceee
Confidence 3679999998877666543 3 45599999888 12236799998875444333
No 268
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=33.95 E-value=32 Score=21.92 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=24.7
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHH
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLAL 351 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~ 351 (460)
...|..+.+.........|+-.+|..|....
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCC
Confidence 4568888888788888999999999998543
No 269
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=33.77 E-value=14 Score=36.48 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecC
Q 012618 333 TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN 386 (460)
Q Consensus 333 ~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~ 386 (460)
-.+++.|||+.=. ..|=.. .+.......||+||..=. ++.+.+..
T Consensus 303 P~VYl~CGHVhG~---h~Wg~~-----~~~~~~~r~CPlCr~~g~-~V~L~mG~ 347 (416)
T PF04710_consen 303 PWVYLNCGHVHGY---HNWGQD-----SDRDPRSRTCPLCRQVGP-YVPLWMGC 347 (416)
T ss_dssp ------------------------------------------------------
T ss_pred ceeeccccceeee---cccccc-----cccccccccCCCccccCC-ceeEeecc
Confidence 3567789997532 222100 112223689999998643 36666543
No 270
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=33.41 E-value=19 Score=34.81 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCccCcccccCCCccEec---CCCC--ccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 320 DVELCCICFENLCTIEIK---PCGH--QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~---~CgH--~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
....|.||-..+...+.. .=|+ ..|.-|...| .-....||+|-..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW-----------~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEW-----------HVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcc-----------cccCccCCCCCCC
Confidence 356799999988654332 2233 4499999877 2234789999873
No 271
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=33.05 E-value=31 Score=24.25 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=13.2
Q ss_pred CCCCCCCcccccccceee
Q 012618 363 VPEVPACPFCRCSIANLV 380 (460)
Q Consensus 363 ~~~~~~CP~Cr~~i~~~~ 380 (460)
....+.||+|.++..+-.
T Consensus 36 ~~~~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 36 FEEEPVCPLCKSPMVSGT 53 (59)
T ss_pred cCCCccCCCcCCccccce
Confidence 345589999999876543
No 272
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.77 E-value=16 Score=25.05 Aligned_cols=11 Identities=27% Similarity=1.020 Sum_probs=5.8
Q ss_pred CCcccccccce
Q 012618 368 ACPFCRCSIAN 378 (460)
Q Consensus 368 ~CP~Cr~~i~~ 378 (460)
.||+|.++++.
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999998753
No 273
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=32.55 E-value=32 Score=30.59 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=29.9
Q ss_pred ChHHHHHHhcCCHHHH-HHHHHcCCC----CCCCCCCCCCHHHHHHHhCh
Q 012618 199 STPLHFAARGGSLECI-RELLAWGAD----RVQPDAFGRIPYAIALKYKH 243 (460)
Q Consensus 199 ~TpLh~A~~~g~~~~v-~~Ll~~gad----~~~~d~~G~tpL~~A~~~~~ 243 (460)
..|||-|+.-+..+++ -++++..+. .|..|.+|..+|.+|..+..
T Consensus 223 e~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~~~~ 272 (280)
T KOG4591|consen 223 ENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALCREL 272 (280)
T ss_pred cchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHHHHH
Confidence 3688888887777765 344454433 45667788888888876543
No 274
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.22 E-value=16 Score=35.30 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=33.5
Q ss_pred CccCcccccCCCccEecC----CCC--ccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 321 VELCCICFENLCTIEIKP----CGH--QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~----CgH--~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
...|.||-..+...+... =|+ ..|.-|...| .-....||+|-.. ..+-.+.+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW-----------~~~R~~C~~Cg~~-~~l~y~~~ 241 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEW-----------HYVRVKCSHCEES-KHLAYLSL 241 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcc-----------cccCccCCCCCCC-CceeeEee
Confidence 457999999886543322 343 4499999888 2234789999885 33333333
No 275
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=31.52 E-value=23 Score=33.63 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=21.8
Q ss_pred ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 333 TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 333 ~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
-.+.+.|||+-= ...| ..-.+..++...||+||..=.
T Consensus 316 P~vYl~CGHV~G---~H~W-----G~~e~~g~~~r~CPmC~~~gp 352 (429)
T KOG3842|consen 316 PWVYLNCGHVHG---YHNW-----GVRENTGQRERECPMCRVVGP 352 (429)
T ss_pred CeEEEecccccc---cccc-----ccccccCcccCcCCeeeeecc
Confidence 356678999652 1222 111234456689999997543
No 276
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=1e+02 Score=33.45 Aligned_cols=29 Identities=31% Similarity=0.726 Sum_probs=21.4
Q ss_pred ccCcccccCCC-------ccEecCCCCccchhhHHH
Q 012618 322 ELCCICFENLC-------TIEIKPCGHQMCAHCTLA 350 (460)
Q Consensus 322 ~~C~iC~~~~~-------~~~~~~CgH~~C~~C~~~ 350 (460)
+.|.-|++..- .++.+.|||.+-..|...
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~ 820 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMM 820 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhccccc
Confidence 37999987654 456677999998888743
No 277
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.40 E-value=28 Score=37.39 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=40.1
Q ss_pred CCCCCCCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 315 TSEASDVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 315 ~~~~~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
.........|.+|+....+ ....-|+|-+|..|+..|-... -..+....|+||..-|..+-.+
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL-----~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQL-----EESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHh-----hccccccccccHHHHhhhhhhh
Confidence 3344445667777776222 2223499999999999883322 2334456799999888766544
No 278
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=31.36 E-value=34 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=18.5
Q ss_pred HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 218 l~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
++.|+--|..|....|+=.+|.++++.+.-+.|++.|+
T Consensus 2 le~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv 39 (271)
T KOG1709|consen 2 LEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGV 39 (271)
T ss_pred cccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCC
Confidence 34444444444444555555555555554444444444
No 279
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=30.36 E-value=13 Score=25.00 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=11.3
Q ss_pred CCCCCCCCccccccc
Q 012618 362 AVPEVPACPFCRCSI 376 (460)
Q Consensus 362 ~~~~~~~CP~Cr~~i 376 (460)
.......||.|...|
T Consensus 20 ~~~~~irCp~Cg~rI 34 (49)
T COG1996 20 QETRGIRCPYCGSRI 34 (49)
T ss_pred hccCceeCCCCCcEE
Confidence 344558899999886
No 280
>cd07168 NR_DBD_DHR4_like DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Ecdysone-induced orphan receptor DHR4 is a member of the nuclear receptor family. DHR4 is expressed during the early Drosophila larval development and is induced by ecdysone. DHR4 coordinates growth and maturation in Drosophila by mediating endocrine response to the attainment of proper body size during larval development. Mutations in DHR4 result in shorter larval development which translates into smaller and lighter flies. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, DHR4
Probab=29.75 E-value=84 Score=24.24 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=17.1
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHH
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLAL 351 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~ 351 (460)
....|.||.+......+- =..|..|..-.
T Consensus 5 ~~~~C~VCg~~~~g~hyG---v~sC~aCk~FF 33 (90)
T cd07168 5 SPKLCSICEDKATGLHYG---IITCEGCKGFF 33 (90)
T ss_pred cCCCCcccCCcCcceEEC---ceehhhhhHhh
Confidence 445699998765544432 13377776443
No 281
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=28.65 E-value=26 Score=35.40 Aligned_cols=33 Identities=27% Similarity=0.658 Sum_probs=23.6
Q ss_pred CCCCccCcccccCCCc----cEecCCCCccchhhHHH
Q 012618 318 ASDVELCCICFENLCT----IEIKPCGHQMCAHCTLA 350 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~ 350 (460)
..+.+.|+.|...+-. ..+..||..||..|.+.
T Consensus 898 d~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~a 934 (990)
T KOG1819|consen 898 DEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCA 934 (990)
T ss_pred CCcchhhhhccCcHHHHHHhhhhcccCceeecccccC
Confidence 3455678888876543 44568999999999843
No 282
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.48 E-value=29 Score=19.97 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=8.2
Q ss_pred CCcccccccc
Q 012618 368 ACPFCRCSIA 377 (460)
Q Consensus 368 ~CP~Cr~~i~ 377 (460)
.||-|+..|.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 5999998884
No 283
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=28.23 E-value=1.5e+02 Score=30.40 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=65.5
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHH
Q 012618 12 ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAM 91 (460)
Q Consensus 12 ~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~ 91 (460)
++-+-+|.+-|+++.+..+.+.-.+.... ...=..|...|++++++..+.+ ..+.+ ..+.+...
T Consensus 322 ~~rFeLAl~lg~L~~A~~~a~~~~~~~~W------~~Lg~~AL~~g~~~lAe~c~~k---~~d~~-------~L~lLy~~ 385 (443)
T PF04053_consen 322 DHRFELALQLGNLDIALEIAKELDDPEKW------KQLGDEALRQGNIELAEECYQK---AKDFS-------GLLLLYSS 385 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHCCCCSTHHHH------HHHHHHHHHTTBHHHHHHHHHH---CT-HH-------HHHHHHHH
T ss_pred HHHhHHHHhcCCHHHHHHHHHhcCcHHHH------HHHHHHHHHcCCHHHHHHHHHh---hcCcc-------ccHHHHHH
Confidence 45677888888888887777654433211 1344567778888888888887 33332 45566677
Q ss_pred cCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCH-HHHHHHHHhcC
Q 012618 92 NGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS-DCLQALLTAAR 140 (460)
Q Consensus 92 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~ 140 (460)
.|+.+-++.|.+.-. ...+-..+++.+...|+. ++++.|.+.+.
T Consensus 386 ~g~~~~L~kl~~~a~-----~~~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 386 TGDREKLSKLAKIAE-----ERGDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp CT-HHHHHHHHHHHH-----HTT-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred hCCHHHHHHHHHHHH-----HccCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 888888887765421 111234567777777765 67777777653
No 284
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.56 E-value=40 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=19.5
Q ss_pred ccCcccccCCCc----cEecCCCCccchhhHHH
Q 012618 322 ELCCICFENLCT----IEIKPCGHQMCAHCTLA 350 (460)
Q Consensus 322 ~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~ 350 (460)
..|.+|...+.. .....||+.+|..|+..
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~ 35 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSN 35 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCC
Confidence 347777655444 33457999999999843
No 285
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.14 E-value=48 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=20.4
Q ss_pred CCccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618 340 GHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRC 374 (460)
Q Consensus 340 gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 374 (460)
.-.||..|+..-+..+.... .......||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev--~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEV--LEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHH--hcCCceECCCCCC
Confidence 55789999866644332111 1123488999998
No 286
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.13 E-value=4e+02 Score=31.09 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCcc
Q 012618 50 LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108 (460)
Q Consensus 50 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 108 (460)
|-+|...+..++.+-=+=.. +..- ...+=..++.-|.....++.|++|+++|.+.
T Consensus 397 L~LalaWnRvDIA~seIF~~--~~~W--~s~~Le~aM~dALv~DR~dFV~LLlEnGv~m 451 (1381)
T KOG3614|consen 397 LKLALAWNRVDIARSEIFLN--GAKW--KSPDLESAMDDALVLDRPDFVRLLLENGVSM 451 (1381)
T ss_pred HHHHHHhhhhhHHHHHHhcc--CccC--CchHHHHHHHHHHHhCcHHHHHHHHHcCcch
Confidence 45555555555554322210 2211 1122335667778889999999999999876
No 287
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.41 E-value=43 Score=38.37 Aligned_cols=57 Identities=19% Similarity=0.418 Sum_probs=37.4
Q ss_pred ccCcccccCCCccEecCCCCcc-----chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecC
Q 012618 322 ELCCICFENLCTIEIKPCGHQM-----CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN 386 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~-----C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~ 386 (460)
..|.-|-.......|..||... |..|-... + .+... ...||.|-.+.......++..
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev-----~--~des~-a~~CP~CGtplv~~~~~~i~~ 729 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEV-----P--PDESG-RVECPRCDVELTPYQRRTINV 729 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCcc-----C--CCccc-cccCCCCCCcccccceEEecH
Confidence 4688888766555666688653 88887432 0 11111 468999999998877776643
No 288
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.20 E-value=28 Score=27.97 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=17.6
Q ss_pred cchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 343 MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 343 ~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
.|..|..+.+.-++ .+..||.|-....--
T Consensus 11 ~Cp~CG~kFYDLnk--------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYDLNK--------DPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchhccCCC--------CCccCCCCCCccCcc
Confidence 36667766644332 347799998765433
No 289
>PF15616 TerY-C: TerY-C metal binding domain
Probab=26.18 E-value=49 Score=27.52 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=30.2
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.-|+-|-.....+++ .||+++|. ..+....||-|-+.+.
T Consensus 78 PgCP~CGn~~~fa~C-~CGkl~Ci----------------~g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCGKLFCI----------------DGEGEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCcChhcEEEe-cCCCEEEe----------------CCCCCEECCCCCCeee
Confidence 679999999888888 59999882 1233478999988753
No 290
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=26.16 E-value=31 Score=19.80 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=8.1
Q ss_pred CCCccccccc
Q 012618 367 PACPFCRCSI 376 (460)
Q Consensus 367 ~~CP~Cr~~i 376 (460)
..||+|.+.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3599998887
No 291
>PRK11032 hypothetical protein; Provisional
Probab=25.73 E-value=50 Score=28.54 Aligned_cols=30 Identities=23% Similarity=0.586 Sum_probs=20.8
Q ss_pred CCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 331 LCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 331 ~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
....++..|||.++ .+.+...+.||-|-..
T Consensus 122 ~G~LvC~~Cg~~~~---------------~~~p~~i~pCp~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHLA---------------FYTPEVLPLCPKCGHD 151 (160)
T ss_pred cceEEecCCCCEEE---------------ecCCCcCCCCCCCCCC
Confidence 35566777888665 2345566899999775
No 292
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.39 E-value=26 Score=36.64 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=8.9
Q ss_pred CCCCCCcccccc
Q 012618 364 PEVPACPFCRCS 375 (460)
Q Consensus 364 ~~~~~CP~Cr~~ 375 (460)
+-+..||-|.+.
T Consensus 251 ~~~~~Cp~C~s~ 262 (505)
T TIGR00595 251 PIPKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCCCC
Confidence 344789999875
No 293
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.38 E-value=41 Score=31.00 Aligned_cols=21 Identities=29% Similarity=1.028 Sum_probs=15.6
Q ss_pred chhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 344 CAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 344 C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
|..|...+- .+.+.||+|+..
T Consensus 197 C~sC~qqIH-----------RNAPiCPlCK~K 217 (230)
T PF10146_consen 197 CQSCHQQIH-----------RNAPICPLCKAK 217 (230)
T ss_pred hHhHHHHHh-----------cCCCCCcccccc
Confidence 999987772 234899999864
No 294
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.03 E-value=8 Score=28.19 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=21.8
Q ss_pred cCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 323 LCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 323 ~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
.|..|... +.... ||..|..|.... .....||-|.+++..+.
T Consensus 3 ~CP~C~~~---L~~~~-~~~~C~~C~~~~------------~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 3 TCPKCQQE---LEWQG-GHYHCEACQKDY------------KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp B-SSS-SB---EEEET-TEEEETTT--EE------------EEEEE-TTT-SB-EEEE
T ss_pred cCCCCCCc---cEEeC-CEEECccccccc------------eecccCCCcccHHHHHH
Confidence 47777655 22222 677788888543 22367999999987653
No 295
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=24.89 E-value=39 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=18.2
Q ss_pred CcccccC-CCccEecCCCCccchh----hHHHH
Q 012618 324 CCICFEN-LCTIEIKPCGHQMCAH----CTLAL 351 (460)
Q Consensus 324 C~iC~~~-~~~~~~~~CgH~~C~~----C~~~~ 351 (460)
|..|... ....+.+-||++.|.+ .+..-
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H 33 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKH 33 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHH
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHh
Confidence 5667665 5567778999999975 55444
No 296
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=24.85 E-value=58 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=14.4
Q ss_pred CCcccccccceeeeEeecCCcc
Q 012618 368 ACPFCRCSIANLVAARIINSAT 389 (460)
Q Consensus 368 ~CP~Cr~~i~~~~~~~~~~~~~ 389 (460)
.||.|...-..++.++.+.++|
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE 23 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADE 23 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSS
T ss_pred CCcCCCCCeEEEEEeeccCCCC
Confidence 5999999988888777765443
No 297
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.31 E-value=46 Score=30.81 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=36.3
Q ss_pred CCCCccCcccccCCCcc----EecCCCC-----ccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 318 ASDVELCCICFENLCTI----EIKPCGH-----QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~----~~~~CgH-----~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
...+..|-||+....+- -+.||.. -+-..|...|-..+.. ........||-|+.+-
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~---~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR---GNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc---CCCCceeechhhcchh
Confidence 34456799999766653 3357753 2367899999555432 1234456899999884
No 298
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.29 E-value=26 Score=35.95 Aligned_cols=42 Identities=29% Similarity=0.585 Sum_probs=24.0
Q ss_pred CCCCccchhhHHHHhhcC-----C-------CCccc---CCCCCCCCccccccccee
Q 012618 338 PCGHQMCAHCTLALCCHK-----K-------PDIIT---AVPEVPACPFCRCSIANL 379 (460)
Q Consensus 338 ~CgH~~C~~C~~~~~~~~-----~-------~~~~~---~~~~~~~CP~Cr~~i~~~ 379 (460)
.|||.||+.|...+=... + .+..+ ...+...||.|..+|...
T Consensus 183 ~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~ 239 (444)
T KOG1815|consen 183 GCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKD 239 (444)
T ss_pred CCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhcc
Confidence 599999999986651110 0 00000 123445699999888543
No 299
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=24.07 E-value=35 Score=23.15 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=13.7
Q ss_pred CCCCCCcccccccceeee
Q 012618 364 PEVPACPFCRCSIANLVA 381 (460)
Q Consensus 364 ~~~~~CP~Cr~~i~~~~~ 381 (460)
+....||+|..+-+.|..
T Consensus 32 p~~w~CP~C~a~K~~F~~ 49 (50)
T cd00730 32 PDDWVCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCCCCCcHHHcEe
Confidence 455799999988776654
No 300
>KOG4216 consensus Steroid hormone nuclear receptor [Transcription]
Probab=24.06 E-value=31 Score=33.95 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCccCcccccCCCccEe-----cCCCCcc--chhhH-HHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 320 DVELCCICFENLCTIEI-----KPCGHQM--CAHCT-LALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~-----~~CgH~~--C~~C~-~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
+.-.|+||-|....+-. ..|.-.| =.+|. -.-|.+.+..+.+..-+ ..|..||-.
T Consensus 45 EvIPCKiCGDKSSGiHYGVITCEGCKGFFRRSQ~s~a~YsCpRqknC~iDRtnR-NRCQ~CRLq 107 (479)
T KOG4216|consen 45 EIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNANYSCPRQKNCLIDRTNR-NRCQHCRLQ 107 (479)
T ss_pred EEEeeeeccCCCCcceeeeEeeccchHhhhhhhhccccccCCcccCCccccccc-chhhHHHHH
Confidence 44579999998876433 3444444 22222 23477777776665544 789999853
No 301
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=23.56 E-value=68 Score=20.51 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=16.8
Q ss_pred CCcccccccceeeeEeecCCcc
Q 012618 368 ACPFCRCSIANLVAARIINSAT 389 (460)
Q Consensus 368 ~CP~Cr~~i~~~~~~~~~~~~~ 389 (460)
.||-|...-..++.++.+.++|
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE 23 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADE 23 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCC
Confidence 5999998888888887765443
No 302
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=23.30 E-value=62 Score=27.53 Aligned_cols=29 Identities=31% Similarity=0.733 Sum_probs=19.0
Q ss_pred CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 332 CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 332 ~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
...++..|||.++ .+.....+.||-|...
T Consensus 111 G~l~C~~Cg~~~~---------------~~~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 111 GTLVCENCGHEVE---------------LTHPERLPPCPKCGHT 139 (146)
T ss_pred ceEecccCCCEEE---------------ecCCCcCCCCCCCCCC
Confidence 4566667888654 2233456889999875
No 303
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.10 E-value=49 Score=20.81 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=12.9
Q ss_pred CCCCCCcccccccceee
Q 012618 364 PEVPACPFCRCSIANLV 380 (460)
Q Consensus 364 ~~~~~CP~Cr~~i~~~~ 380 (460)
.....||.|...+.+++
T Consensus 24 ~~~~~CP~Cg~~~~r~~ 40 (41)
T smart00834 24 DPLATCPECGGDVRRLI 40 (41)
T ss_pred CCCCCCCCCCCcceecc
Confidence 34578999999877654
No 304
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.28 E-value=62 Score=19.60 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=12.4
Q ss_pred CCCCCcccccccceeee
Q 012618 365 EVPACPFCRCSIANLVA 381 (460)
Q Consensus 365 ~~~~CP~Cr~~i~~~~~ 381 (460)
....||+|..+-+.|..
T Consensus 16 ~~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 16 APWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCCcCcCCCCcHHHcEE
Confidence 44789999987666553
No 305
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=22.23 E-value=21 Score=27.53 Aligned_cols=10 Identities=30% Similarity=1.271 Sum_probs=7.4
Q ss_pred CCCccccccc
Q 012618 367 PACPFCRCSI 376 (460)
Q Consensus 367 ~~CP~Cr~~i 376 (460)
..||.|+++.
T Consensus 81 ~~Cp~C~spF 90 (105)
T COG4357 81 GSCPYCQSPF 90 (105)
T ss_pred CCCCCcCCCC
Confidence 4499998874
No 306
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=22.11 E-value=49 Score=22.77 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=16.0
Q ss_pred CCCcccccccceeeeEeecC
Q 012618 367 PACPFCRCSIANLVAARIIN 386 (460)
Q Consensus 367 ~~CP~Cr~~i~~~~~~~~~~ 386 (460)
..|.+|+++|....++....
T Consensus 2 ~~CvVCKqpi~~a~~v~T~~ 21 (54)
T PF10886_consen 2 EICVVCKQPIDDALVVETES 21 (54)
T ss_pred CeeeeeCCccCcceEEEcCC
Confidence 46999999999887777543
No 307
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=21.97 E-value=40 Score=26.10 Aligned_cols=35 Identities=23% Similarity=0.552 Sum_probs=26.5
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..|..|........ -|.+|..|+..+ ..|+-|..+
T Consensus 56 ~kC~~C~qktVk~A----Yh~iC~~Ca~~~---------------~vCaKC~k~ 90 (92)
T PF10217_consen 56 KKCNKCQQKTVKHA----YHVICDPCAKEL---------------KVCAKCGKP 90 (92)
T ss_pred ccccccccchHHHH----HHHHHHHHHHhh---------------ccCcccCCC
Confidence 45888877655444 368899999888 889999765
No 308
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=21.81 E-value=38 Score=33.12 Aligned_cols=55 Identities=20% Similarity=0.412 Sum_probs=34.4
Q ss_pred CCccCcccccCCCcc-----EecCCCCcc---chhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 320 DVELCCICFENLCTI-----EIKPCGHQM---CAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~-----~~~~CgH~~---C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..+.|.||-|+.... .+-.|.-.| -++=..+.|.-++..-.++..+ ..|-+||=.
T Consensus 18 ~~~~CaICGDkaTGKHYGA~SCdGCKGFFRRSVrk~~~YtCRF~k~C~VDKdkR-NaCRyCRfq 80 (432)
T KOG4215|consen 18 VAEFCAICGDKATGKHYGAISCDGCKGFFRRSVRKNHQYTCRFNKQCVVDKDKR-NACRYCRFQ 80 (432)
T ss_pred ccchhheeCCcccccccceeecCcchHHHHHHHHhcceeeeeccccccccchhh-hhhhHhhHH
Confidence 457899999987653 334454444 2222234466676666666655 789999855
No 309
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=21.74 E-value=71 Score=28.50 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHcCCHHHHH-HHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcC
Q 012618 113 SLQGRTCLHYAAYYGHSDCLQ-ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172 (460)
Q Consensus 113 ~~~g~t~L~~A~~~g~~~iv~-~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g 172 (460)
+.....|||-|+.-++.+++- |+++..+.. +..+|-.|.+|..+|.+|....
T Consensus 219 d~kTe~~LHk~iki~REDVl~LYfie~daki--------P~~LNd~D~nG~~ALdiAL~~~ 271 (280)
T KOG4591|consen 219 DGKTENPLHKAIKIEREDVLFLYFIEMDAKI--------PGILNDADHNGALALDIALCRE 271 (280)
T ss_pred cCCCcchhHHhhhccccceeeehhhhccccc--------cccccccCCCchHHHHHHHHHH
Confidence 345667999999999988865 455554432 2337888999999999987653
No 310
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=21.56 E-value=98 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=23.8
Q ss_pred cCcccccCCCccEecCCCCccchhhHHHHhhcC
Q 012618 323 LCCICFENLCTIEIKPCGHQMCAHCTLALCCHK 355 (460)
Q Consensus 323 ~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~ 355 (460)
.|.||-.....-... .|...|..|-..+-...
T Consensus 1 ~CiiC~~~~~~GI~I-~~~fIC~~CE~~iv~~~ 32 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKFICSDCEKEIVNTE 32 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeEehHHHHHHhccCC
Confidence 388898887775555 78888999998874333
No 311
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=21.21 E-value=89 Score=24.38 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=21.7
Q ss_pred CCCCCcccccccceeeeEeecCCccc
Q 012618 365 EVPACPFCRCSIANLVAARIINSATE 390 (460)
Q Consensus 365 ~~~~CP~Cr~~i~~~~~~~~~~~~~~ 390 (460)
....||.|-++-..++.++++.++|+
T Consensus 64 t~~~Cp~Cgh~rayF~qlQtRSADEP 89 (105)
T KOG2906|consen 64 TEATCPTCGHERAYFMQLQTRSADEP 89 (105)
T ss_pred ccCcCCCCCCCceEEEEeeeccCCCc
Confidence 34689999999999999999876554
No 312
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=21.19 E-value=20 Score=23.55 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=11.6
Q ss_pred CCCCCCCcccccccc
Q 012618 363 VPEVPACPFCRCSIA 377 (460)
Q Consensus 363 ~~~~~~CP~Cr~~i~ 377 (460)
......||.|...|-
T Consensus 16 ~~~~irC~~CG~rIl 30 (44)
T smart00659 16 SKDVVRCRECGYRIL 30 (44)
T ss_pred CCCceECCCCCceEE
Confidence 345588999999874
No 313
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=21.05 E-value=84 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.726 Sum_probs=14.7
Q ss_pred EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618 335 EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR 373 (460)
Q Consensus 335 ~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr 373 (460)
....|++.||..|=..+ -.....||-|-
T Consensus 23 ~C~~C~~~FC~dCD~fi-----------HE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFI-----------HETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTT-----------TTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhh-----------hccccCCcCCC
Confidence 34579999999996333 33447799885
No 314
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.68 E-value=68 Score=19.68 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=11.3
Q ss_pred CCCCcccccccceee
Q 012618 366 VPACPFCRCSIANLV 380 (460)
Q Consensus 366 ~~~CP~Cr~~i~~~~ 380 (460)
+..||+|..+-+.+.
T Consensus 18 p~~CP~Cg~~~~~F~ 32 (34)
T cd00729 18 PEKCPICGAPKEKFE 32 (34)
T ss_pred CCcCcCCCCchHHcE
Confidence 368999998866654
No 315
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=20.60 E-value=37 Score=28.25 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=13.1
Q ss_pred CCCCcccccccceeeeE
Q 012618 366 VPACPFCRCSIANLVAA 382 (460)
Q Consensus 366 ~~~CP~Cr~~i~~~~~~ 382 (460)
...||.||+.|--+.-.
T Consensus 9 ei~CPhCRQ~ipALtLT 25 (163)
T TIGR02652 9 EIRCPHCRQNIPALTLT 25 (163)
T ss_pred cCcCchhhcccchheec
Confidence 37899999999766543
No 316
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=83 Score=33.82 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=15.8
Q ss_pred chhhHHHHhhcCCCCcccCC--CCCCCCccccccc
Q 012618 344 CAHCTLALCCHKKPDIITAV--PEVPACPFCRCSI 376 (460)
Q Consensus 344 C~~C~~~~~~~~~~~~~~~~--~~~~~CP~Cr~~i 376 (460)
|..|.... .+|.++. ..+..||.|--.+
T Consensus 154 C~~C~~EY-----~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 154 CPFCDKEY-----KDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CHHHHHHh-----cCccccccccccccCcccCCCe
Confidence 77776555 4444443 3446677776543
No 317
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=32 Score=32.99 Aligned_cols=45 Identities=29% Similarity=0.603 Sum_probs=32.8
Q ss_pred CccCcccccCCCc------cEecC--------CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 321 VELCCICFENLCT------IEIKP--------CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 321 ~~~C~iC~~~~~~------~~~~~--------CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..+|.||...... +.++. |||..|..|........ ...||+||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~----------~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA----------GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh----------hhcCCcccce
Confidence 4568888766652 33445 99999999998884333 1789999976
No 318
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=20.27 E-value=71 Score=31.57 Aligned_cols=65 Identities=20% Similarity=0.457 Sum_probs=42.8
Q ss_pred CccCcccccCCCc-cE-ecCCCCccchhhHHHHhhcCCCCcccC-----------CCCC--CCCcccccccceeeeEeec
Q 012618 321 VELCCICFENLCT-IE-IKPCGHQMCAHCTLALCCHKKPDIITA-----------VPEV--PACPFCRCSIANLVAARII 385 (460)
Q Consensus 321 ~~~C~iC~~~~~~-~~-~~~CgH~~C~~C~~~~~~~~~~~~~~~-----------~~~~--~~CP~Cr~~i~~~~~~~~~ 385 (460)
...|.||+--... .. ...|-..+|..|....-+.+-..|... ...+ ..||+|..+-.++..++++
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~i~ 153 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIKIV 153 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeeccc
Confidence 3679999975554 22 245777889999977743332222211 1122 6899999999888888775
No 319
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=20.10 E-value=76 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=16.6
Q ss_pred CcccccCCCccEecCCCCccchh
Q 012618 324 CCICFENLCTIEIKPCGHQMCAH 346 (460)
Q Consensus 324 C~iC~~~~~~~~~~~CgH~~C~~ 346 (460)
|..|.......+.+-|+|..|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 77777666666777898888744
No 320
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.02 E-value=59 Score=22.17 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=8.9
Q ss_pred CCCCcccccccc
Q 012618 366 VPACPFCRCSIA 377 (460)
Q Consensus 366 ~~~CP~Cr~~i~ 377 (460)
...||+|...+.
T Consensus 31 ~v~CPiC~~~~~ 42 (54)
T PF05605_consen 31 NVVCPICSSRVT 42 (54)
T ss_pred CccCCCchhhhh
Confidence 478999987543
Done!